Query 016159
Match_columns 394
No_of_seqs 247 out of 2051
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0045 SucC Succinyl-CoA synt 100.0 5.8E-99 1E-103 737.1 37.0 347 28-386 1-352 (387)
2 PLN00124 succinyl-CoA ligase [ 100.0 7.3E-96 2E-100 740.6 39.8 367 19-386 19-388 (422)
3 PLN02235 ATP citrate (pro-S)-l 100.0 2.3E-85 4.9E-90 656.7 35.6 338 28-386 4-380 (423)
4 KOG1447 GTP-specific succinyl- 100.0 3.6E-86 7.9E-91 615.3 25.3 364 21-386 13-379 (412)
5 PRK14046 malate--CoA ligase su 100.0 1E-83 2.2E-88 650.3 38.9 347 28-384 1-351 (392)
6 KOG2799 Succinyl-CoA synthetas 100.0 5.5E-85 1.2E-89 626.8 16.2 366 19-386 14-383 (434)
7 TIGR01016 sucCoAbeta succinyl- 100.0 1.3E-77 2.7E-82 606.7 39.0 349 28-385 1-352 (386)
8 PRK00696 sucC succinyl-CoA syn 100.0 1.7E-71 3.8E-76 562.3 40.1 346 28-384 1-351 (388)
9 PF08442 ATP-grasp_2: ATP-gras 100.0 3.4E-51 7.3E-56 378.2 18.6 201 29-238 1-202 (202)
10 PF13549 ATP-grasp_5: ATP-gras 100.0 1.1E-36 2.3E-41 285.6 16.1 205 24-253 4-222 (222)
11 PF00549 Ligase_CoA: CoA-ligas 99.7 3E-16 6.4E-21 139.1 9.9 90 297-386 1-119 (153)
12 PF01071 GARS_A: Phosphoribosy 99.5 5.7E-12 1.2E-16 115.9 18.7 175 31-255 2-191 (194)
13 COG1042 Acyl-CoA synthetase (N 99.4 1.5E-13 3.3E-18 145.3 1.9 312 26-371 20-401 (598)
14 TIGR02717 AcCoA-syn-alpha acet 99.3 1.3E-11 2.9E-16 127.5 10.3 118 256-378 263-404 (447)
15 PF02786 CPSase_L_D2: Carbamoy 99.3 2.6E-10 5.6E-15 106.7 16.7 107 32-161 2-111 (211)
16 COG0151 PurD Phosphoribosylami 99.2 5.4E-11 1.2E-15 119.4 11.6 110 27-158 99-209 (428)
17 PRK08654 pyruvate carboxylase 99.2 1.9E-10 4.1E-15 120.6 12.8 175 27-240 111-295 (499)
18 PRK12815 carB carbamoyl phosph 99.2 3.2E-10 7E-15 128.5 14.9 167 27-238 124-304 (1068)
19 TIGR00877 purD phosphoribosyla 99.1 9.3E-10 2E-14 112.7 16.2 102 28-152 101-204 (423)
20 PLN02257 phosphoribosylamine-- 99.1 3.8E-09 8.2E-14 109.0 20.6 104 27-152 98-202 (434)
21 PRK01372 ddl D-alanine--D-alan 99.1 4E-09 8.6E-14 103.2 18.5 109 27-165 94-203 (304)
22 PRK12833 acetyl-CoA carboxylas 99.1 4.5E-09 9.8E-14 109.4 17.5 171 28-239 115-298 (467)
23 COG1042 Acyl-CoA synthetase (N 99.1 1.3E-10 2.8E-15 123.3 5.4 118 26-173 467-586 (598)
24 PRK07178 pyruvate carboxylase 99.1 1.6E-09 3.6E-14 112.8 13.6 173 27-239 110-294 (472)
25 PRK08591 acetyl-CoA carboxylas 99.1 1.6E-09 3.4E-14 112.0 13.3 171 28-238 112-294 (451)
26 TIGR00514 accC acetyl-CoA carb 99.0 1E-08 2.2E-13 106.1 19.0 112 27-161 111-225 (449)
27 COG0458 CarB Carbamoylphosphat 99.0 1.8E-09 3.8E-14 108.2 12.4 169 28-239 113-292 (400)
28 KOG1254 ATP-citrate lyase [Ene 99.0 4.3E-11 9.3E-16 120.7 1.0 286 70-376 80-438 (600)
29 PRK13789 phosphoribosylamine-- 99.0 2E-09 4.3E-14 110.8 12.8 104 27-152 104-208 (426)
30 TIGR01369 CPSaseII_lrg carbamo 99.0 2.9E-09 6.2E-14 120.7 14.3 107 28-161 124-231 (1050)
31 PLN02735 carbamoyl-phosphate s 99.0 5E-09 1.1E-13 118.9 16.1 167 28-238 141-322 (1102)
32 TIGR01161 purK phosphoribosyla 99.0 2.3E-08 4.9E-13 100.2 18.9 100 26-153 93-193 (352)
33 COG0439 AccC Biotin carboxylas 99.0 2.8E-09 6E-14 109.6 12.5 173 30-241 114-297 (449)
34 PRK08462 biotin carboxylase; V 99.0 5.7E-09 1.2E-13 107.8 14.8 173 27-239 113-297 (445)
35 PRK14569 D-alanyl-alanine synt 99.0 1.1E-08 2.5E-13 100.2 15.6 95 27-153 94-189 (296)
36 PRK05294 carB carbamoyl phosph 99.0 4.4E-09 9.5E-14 119.5 14.4 166 28-238 125-305 (1066)
37 PF02222 ATP-grasp: ATP-grasp 99.0 1.7E-08 3.7E-13 91.5 15.4 111 39-187 1-112 (172)
38 PRK00885 phosphoribosylamine-- 99.0 5.6E-09 1.2E-13 107.0 13.1 103 28-152 99-202 (420)
39 PRK06019 phosphoribosylaminoim 99.0 4.8E-08 1E-12 98.8 19.3 105 27-161 96-201 (372)
40 PRK14572 D-alanyl-alanine synt 99.0 2.2E-08 4.7E-13 100.4 16.3 96 27-150 126-228 (347)
41 PRK13790 phosphoribosylamine-- 98.9 7.8E-09 1.7E-13 104.9 12.7 100 27-152 63-163 (379)
42 PRK01966 ddl D-alanyl-alanine 98.9 1.8E-08 3.9E-13 100.4 14.9 95 28-150 120-219 (333)
43 PLN02735 carbamoyl-phosphate s 98.9 8.4E-09 1.8E-13 117.1 14.0 103 26-153 697-800 (1102)
44 PRK05586 biotin carboxylase; V 98.9 5.9E-08 1.3E-12 100.4 19.1 172 27-238 111-294 (447)
45 PLN02948 phosphoribosylaminoim 98.9 7E-08 1.5E-12 102.9 19.1 100 27-152 117-217 (577)
46 PRK08463 acetyl-CoA carboxylas 98.9 4.3E-08 9.2E-13 102.4 17.1 173 27-239 110-295 (478)
47 TIGR01142 purT phosphoribosylg 98.9 7.2E-08 1.6E-12 97.2 18.1 102 28-152 97-200 (380)
48 TIGR02712 urea_carbox urea car 98.9 3.2E-08 6.9E-13 113.1 17.0 112 27-161 110-223 (1201)
49 PRK06524 biotin carboxylase-li 98.9 8.5E-08 1.8E-12 99.4 17.4 97 27-152 138-239 (493)
50 PRK10446 ribosomal protein S6 98.9 2.2E-08 4.9E-13 98.2 12.3 99 27-152 95-197 (300)
51 PF07478 Dala_Dala_lig_C: D-al 98.9 7.5E-08 1.6E-12 89.6 15.2 87 38-152 1-92 (203)
52 PRK14573 bifunctional D-alanyl 98.8 1E-07 2.2E-12 105.6 18.1 98 28-152 565-670 (809)
53 TIGR01235 pyruv_carbox pyruvat 98.8 9.3E-08 2E-12 108.6 17.5 172 27-238 111-294 (1143)
54 TIGR01205 D_ala_D_alaTIGR D-al 98.8 2.7E-07 5.9E-12 90.6 17.9 98 27-152 101-205 (315)
55 COG4770 Acetyl/propionyl-CoA c 98.8 1.6E-07 3.5E-12 97.0 16.4 196 31-264 115-328 (645)
56 TIGR01369 CPSaseII_lrg carbamo 98.8 1.5E-07 3.2E-12 106.9 17.3 97 30-151 668-765 (1050)
57 PRK12999 pyruvate carboxylase; 98.8 1.5E-07 3.3E-12 107.1 17.3 173 27-239 115-299 (1146)
58 PF13535 ATP-grasp_4: ATP-gras 98.8 9.9E-08 2.1E-12 85.5 12.3 96 31-150 4-100 (184)
59 PRK12815 carB carbamoyl phosph 98.8 7.5E-08 1.6E-12 109.4 14.2 95 30-152 669-764 (1068)
60 PRK06395 phosphoribosylamine-- 98.8 1.9E-07 4.2E-12 96.4 15.8 99 27-153 101-205 (435)
61 PRK09288 purT phosphoribosylgl 98.8 8.1E-08 1.8E-12 97.3 12.8 103 27-152 109-213 (395)
62 PRK05294 carB carbamoyl phosph 98.8 8.4E-08 1.8E-12 109.1 14.2 99 29-152 667-766 (1066)
63 PRK06111 acetyl-CoA carboxylas 98.7 4.7E-07 1E-11 93.4 18.4 106 27-153 111-219 (450)
64 PRK14016 cyanophycin synthetas 98.7 6.2E-08 1.4E-12 105.9 12.2 95 28-150 211-307 (727)
65 TIGR02068 cya_phycin_syn cyano 98.7 7.8E-08 1.7E-12 107.1 12.1 95 28-150 210-306 (864)
66 COG0026 PurK Phosphoribosylami 98.7 6.3E-07 1.4E-11 89.2 16.5 121 30-187 98-219 (375)
67 KOG0237 Glycinamide ribonucleo 98.7 1.1E-07 2.3E-12 98.4 10.4 116 24-160 101-217 (788)
68 PRK14571 D-alanyl-alanine synt 98.7 7.7E-07 1.7E-11 87.2 16.0 91 28-151 92-183 (299)
69 PRK05784 phosphoribosylamine-- 98.6 2.2E-07 4.7E-12 97.2 12.4 104 27-152 105-219 (486)
70 TIGR01435 glu_cys_lig_rel glut 98.6 1.8E-07 3.9E-12 101.5 12.0 95 30-151 474-572 (737)
71 KOG0369 Pyruvate carboxylase [ 98.6 8.6E-07 1.9E-11 92.9 16.0 276 31-377 147-449 (1176)
72 PRK07206 hypothetical protein; 98.6 3.5E-07 7.5E-12 93.4 12.7 99 30-149 107-209 (416)
73 COG1038 PycA Pyruvate carboxyl 98.6 3E-07 6.5E-12 97.9 11.7 281 27-377 117-426 (1149)
74 PRK14570 D-alanyl-alanine synt 98.6 2.8E-07 6.2E-12 93.1 11.1 96 28-151 126-229 (364)
75 KOG0238 3-Methylcrotonyl-CoA c 98.6 9E-07 2E-11 90.4 14.1 196 31-264 111-324 (670)
76 PRK02471 bifunctional glutamat 98.6 3.2E-07 7E-12 100.4 11.9 92 30-149 487-583 (752)
77 PRK14568 vanB D-alanine--D-lac 98.6 2.5E-07 5.3E-12 92.6 10.1 95 28-152 129-224 (343)
78 PRK13278 purP 5-formaminoimida 98.5 4.4E-06 9.5E-11 84.2 15.7 101 28-161 120-221 (358)
79 PRK12767 carbamoyl phosphate s 98.5 1.4E-06 3E-11 85.9 11.4 101 28-161 108-211 (326)
80 PF08443 RimK: RimK-like ATP-g 98.4 5.8E-07 1.2E-11 82.5 8.0 94 32-152 4-101 (190)
81 TIGR03103 trio_acet_GNAT GNAT- 98.4 1.4E-06 3.1E-11 92.5 12.1 93 29-150 295-389 (547)
82 PRK02186 argininosuccinate lya 98.4 1.8E-06 3.9E-11 96.7 13.0 98 28-152 104-202 (887)
83 TIGR02144 LysX_arch Lysine bio 98.4 2.7E-06 5.8E-11 82.0 10.9 101 26-149 82-184 (280)
84 TIGR00768 rimK_fam alpha-L-glu 98.3 5.1E-06 1.1E-10 79.5 11.4 97 27-147 84-183 (277)
85 PF15632 ATPgrasp_Ter: ATP-gra 98.3 3.2E-06 7E-11 84.1 9.2 163 28-238 104-282 (329)
86 PRK06849 hypothetical protein; 98.3 3.1E-06 6.6E-11 86.0 9.3 93 25-148 110-204 (389)
87 COG0189 RimK Glutathione synth 98.2 1E-05 2.2E-10 80.4 11.3 105 21-151 109-216 (318)
88 COG0027 PurT Formate-dependent 98.1 1.7E-05 3.8E-10 77.2 10.6 86 42-150 125-211 (394)
89 PRK13277 5-formaminoimidazole- 98.1 3.5E-05 7.5E-10 77.3 13.0 101 32-161 127-228 (366)
90 COG1181 DdlA D-alanine-D-alani 97.8 0.00042 9.1E-09 68.9 13.0 97 28-152 100-201 (317)
91 KOG0368 Acetyl-CoA carboxylase 97.7 6.2E-05 1.3E-09 84.8 6.2 151 52-241 225-381 (2196)
92 PF02655 ATP-grasp_3: ATP-gras 97.2 0.0008 1.7E-08 60.1 6.3 82 31-153 3-85 (161)
93 KOG0370 Multifunctional pyrimi 97.1 0.00028 6.1E-09 76.9 3.4 133 39-208 506-649 (1435)
94 TIGR02291 rimK_rel_E_lig alpha 97.0 0.0048 1E-07 61.3 10.0 73 11-85 17-89 (317)
95 PLN02941 inositol-tetrakisphos 97.0 0.0038 8.1E-08 62.4 9.2 91 30-151 106-208 (328)
96 COG1759 5-formaminoimidazole-4 96.8 0.0057 1.2E-07 60.0 8.5 89 36-154 129-218 (361)
97 PRK12458 glutathione synthetas 95.8 0.039 8.5E-07 55.3 8.8 93 24-147 122-220 (338)
98 COG3919 Predicted ATP-grasp en 95.8 0.025 5.3E-07 55.3 7.0 96 38-161 121-223 (415)
99 PF14397 ATPgrasp_ST: Sugar-tr 95.1 0.06 1.3E-06 52.8 7.2 70 12-85 7-87 (285)
100 TIGR01380 glut_syn glutathione 94.2 0.27 6E-06 48.6 9.3 81 41-148 129-213 (312)
101 PRK05246 glutathione synthetas 94.1 0.26 5.5E-06 48.8 9.0 77 45-148 134-214 (316)
102 PF13607 Succ_CoA_lig: Succiny 94.0 0.28 6E-06 42.9 7.9 79 291-375 1-79 (138)
103 PF02955 GSH-S_ATP: Prokaryoti 92.2 0.47 1E-05 43.1 6.8 67 46-138 12-79 (173)
104 KOG0370 Multifunctional pyrimi 91.9 1.3 2.9E-05 49.5 10.8 87 36-147 1038-1125(1435)
105 PRK06091 membrane protein FdrA 91.0 1.5 3.2E-05 46.8 10.0 80 291-374 193-278 (555)
106 PTZ00187 succinyl-CoA syntheta 90.1 1.2 2.7E-05 44.3 8.0 66 290-355 168-234 (317)
107 TIGR01019 sucCoAalpha succinyl 89.8 1.4 3.1E-05 43.2 8.2 67 290-356 142-209 (286)
108 PLN02522 ATP citrate (pro-S)-l 89.8 1.3 2.7E-05 48.0 8.4 88 290-381 166-255 (608)
109 PLN00125 Succinyl-CoA ligase [ 88.8 1.4 3.1E-05 43.5 7.4 66 290-356 149-216 (300)
110 PRK05678 succinyl-CoA syntheta 88.6 1.9 4.1E-05 42.5 8.1 67 290-356 144-211 (291)
111 PF11379 DUF3182: Protein of u 86.7 2.6 5.5E-05 42.2 7.6 89 40-149 108-196 (355)
112 COG0616 SppA Periplasmic serin 85.9 3.2 6.8E-05 41.4 8.0 57 327-386 79-138 (317)
113 TIGR02717 AcCoA-syn-alpha acet 85.6 3.9 8.5E-05 42.6 8.9 73 290-364 149-221 (447)
114 PF10281 Ish1: Putative stress 85.5 2 4.4E-05 28.9 4.5 33 30-64 4-36 (38)
115 PRK10727 DNA-binding transcrip 85.4 3.6 7.8E-05 40.4 8.2 90 292-388 177-278 (343)
116 COG2232 Predicted ATP-dependen 83.4 2.7 5.9E-05 42.0 6.1 31 129-161 176-206 (389)
117 COG0399 WecE Predicted pyridox 83.1 4 8.6E-05 41.7 7.4 63 304-376 84-150 (374)
118 COG0074 SucD Succinyl-CoA synt 82.9 7.7 0.00017 38.0 8.8 82 287-370 141-224 (293)
119 PRK09526 lacI lac repressor; R 82.8 9.2 0.0002 37.3 9.8 89 292-389 182-282 (342)
120 PF14398 ATPgrasp_YheCD: YheC/ 82.7 47 0.001 32.0 18.3 188 29-249 16-229 (262)
121 cd06286 PBP1_CcpB_like Ligand- 80.8 7.9 0.00017 35.9 8.1 55 327-388 156-216 (260)
122 cd06270 PBP1_GalS_like Ligand 80.7 5.9 0.00013 37.0 7.3 73 308-387 139-217 (268)
123 cd07014 S49_SppA Signal peptid 80.7 6.2 0.00014 35.5 7.1 62 323-385 17-81 (177)
124 cd06297 PBP1_LacI_like_12 Liga 80.0 6.1 0.00013 37.2 7.2 75 308-389 142-222 (269)
125 cd01575 PBP1_GntR Ligand-bindi 80.0 7.3 0.00016 36.1 7.6 73 309-388 140-218 (268)
126 cd06288 PBP1_sucrose_transcrip 77.4 18 0.0004 33.5 9.5 88 292-386 117-216 (269)
127 cd06298 PBP1_CcpA_like Ligand- 77.2 16 0.00035 33.8 9.1 86 292-384 117-214 (268)
128 PRK05849 hypothetical protein; 76.5 1.4E+02 0.003 33.7 17.8 190 31-252 10-215 (783)
129 cd06279 PBP1_LacI_like_3 Ligan 76.1 14 0.00031 34.9 8.5 53 329-388 178-236 (283)
130 cd06294 PBP1_ycjW_transcriptio 75.3 12 0.00027 34.6 7.7 74 308-388 145-224 (270)
131 cd06291 PBP1_Qymf_like Ligand 75.2 21 0.00045 33.1 9.2 87 292-386 113-212 (265)
132 PRK10423 transcriptional repre 74.6 11 0.00024 36.4 7.4 90 292-388 175-276 (327)
133 cd06287 PBP1_LacI_like_8 Ligan 74.3 17 0.00036 34.5 8.5 64 307-378 140-204 (269)
134 PRK11041 DNA-binding transcrip 74.1 15 0.00033 35.0 8.2 89 292-387 153-253 (309)
135 cd06319 PBP1_ABC_sugar_binding 74.0 14 0.0003 34.5 7.8 87 292-386 126-222 (277)
136 TIGR01481 ccpA catabolite cont 73.4 13 0.00027 36.1 7.5 89 292-388 177-277 (329)
137 PRK14987 gluconate operon tran 73.3 13 0.00029 36.0 7.7 74 307-388 201-280 (331)
138 cd06274 PBP1_FruR Ligand bindi 72.9 22 0.00048 33.0 8.8 71 308-385 139-216 (264)
139 COG1609 PurR Transcriptional r 72.7 21 0.00045 35.5 9.0 87 293-387 177-277 (333)
140 cd06275 PBP1_PurR Ligand-bindi 72.7 17 0.00036 33.8 7.9 72 308-386 140-217 (269)
141 cd06289 PBP1_MalI_like Ligand- 72.3 10 0.00022 35.1 6.4 54 328-388 160-219 (268)
142 cd01574 PBP1_LacI Ligand-bindi 71.3 19 0.00041 33.3 8.0 52 328-386 157-213 (264)
143 cd06296 PBP1_CatR_like Ligand- 71.3 15 0.00033 34.1 7.3 73 308-387 140-218 (270)
144 cd06305 PBP1_methylthioribose_ 71.2 24 0.00051 32.8 8.6 86 292-386 121-220 (273)
145 PRK10401 DNA-binding transcrip 70.9 14 0.0003 36.2 7.2 90 292-388 177-278 (346)
146 TIGR00705 SppA_67K signal pept 70.4 11 0.00025 40.7 6.9 57 327-384 328-387 (584)
147 cd06320 PBP1_allose_binding Pe 69.6 13 0.00027 34.9 6.4 53 329-388 165-221 (275)
148 PF01041 DegT_DnrJ_EryC1: DegT 69.5 12 0.00025 37.6 6.4 63 304-376 75-141 (363)
149 cd06324 PBP1_ABC_sugar_binding 68.6 20 0.00043 34.6 7.7 70 308-386 165-241 (305)
150 cd00394 Clp_protease_like Case 68.5 19 0.00041 31.5 6.9 55 328-385 11-67 (161)
151 cd06321 PBP1_ABC_sugar_binding 68.5 21 0.00045 33.3 7.6 56 326-388 161-219 (271)
152 cd06284 PBP1_LacI_like_6 Ligan 68.3 18 0.0004 33.3 7.1 70 309-385 139-214 (267)
153 cd01541 PBP1_AraR Ligand-bindi 68.0 24 0.00051 33.0 7.9 74 308-388 143-224 (273)
154 PF00532 Peripla_BP_1: Peripla 67.6 19 0.00041 34.7 7.2 65 307-378 141-207 (279)
155 PRK11303 DNA-binding transcrip 67.3 18 0.00039 35.0 7.1 88 292-388 180-279 (328)
156 PRK10949 protease 4; Provision 67.0 15 0.00032 40.1 6.9 50 325-375 344-396 (618)
157 cd06272 PBP1_hexuronate_repres 66.3 16 0.00035 33.9 6.3 54 328-388 154-213 (261)
158 cd06283 PBP1_RegR_EndR_KdgR_li 66.2 24 0.00053 32.5 7.5 73 307-387 139-218 (267)
159 cd06285 PBP1_LacI_like_7 Ligan 65.6 28 0.00061 32.2 7.9 70 308-386 137-214 (265)
160 cd06281 PBP1_LacI_like_5 Ligan 65.1 25 0.00054 32.8 7.4 70 308-385 139-214 (269)
161 cd06316 PBP1_ABC_sugar_binding 64.8 43 0.00094 31.7 9.1 85 291-383 126-219 (294)
162 cd06308 PBP1_sensor_kinase_lik 64.4 25 0.00053 32.8 7.2 56 326-388 162-221 (270)
163 PF05770 Ins134_P3_kin: Inosit 64.3 6.2 0.00013 39.2 3.1 72 42-142 111-184 (307)
164 cd06271 PBP1_AglR_RafR_like Li 64.0 26 0.00057 32.3 7.3 72 308-387 143-221 (268)
165 cd01544 PBP1_GalR Ligand-bindi 63.7 20 0.00043 33.6 6.4 73 307-388 139-220 (270)
166 PRK15395 methyl-galactoside AB 62.8 19 0.00042 35.3 6.4 73 308-387 185-262 (330)
167 cd07013 S14_ClpP Caseinolytic 62.1 22 0.00048 31.6 6.1 49 327-378 11-61 (162)
168 cd07019 S49_SppA_1 Signal pept 61.3 31 0.00067 32.0 7.1 60 324-384 17-79 (211)
169 cd06273 PBP1_GntR_like_1 This 61.0 29 0.00062 32.2 7.0 73 308-387 140-218 (268)
170 cd06317 PBP1_ABC_sugar_binding 61.0 58 0.0013 30.1 9.1 86 292-385 126-223 (275)
171 cd01536 PBP1_ABC_sugar_binding 60.7 33 0.00072 31.4 7.3 89 292-388 122-220 (267)
172 cd07023 S49_Sppa_N_C Signal pe 60.5 34 0.00073 31.5 7.2 31 326-356 15-47 (208)
173 cd01543 PBP1_XylR Ligand-bindi 60.5 38 0.00082 31.5 7.7 52 328-386 153-210 (265)
174 cd06322 PBP1_ABC_sugar_binding 60.2 58 0.0013 30.1 8.9 86 292-387 122-216 (267)
175 PRK10014 DNA-binding transcrip 59.9 34 0.00074 33.2 7.5 91 292-389 183-294 (342)
176 PF13377 Peripla_BP_3: Peripla 59.5 52 0.0011 27.9 7.9 86 293-386 11-107 (160)
177 cd06292 PBP1_LacI_like_10 Liga 58.9 37 0.00079 31.6 7.3 42 328-377 165-206 (273)
178 PRK14483 DhaKLM operon coactiv 58.4 24 0.00052 35.4 6.1 60 331-390 233-299 (329)
179 cd06293 PBP1_LacI_like_11 Liga 58.3 48 0.001 30.7 8.0 71 308-385 139-215 (269)
180 cd06282 PBP1_GntR_like_2 Ligan 58.1 32 0.00069 31.7 6.7 72 308-388 140-217 (266)
181 PRK10653 D-ribose transporter 58.0 45 0.00097 31.8 7.9 73 307-388 170-245 (295)
182 COG0075 Serine-pyruvate aminot 57.8 56 0.0012 33.5 8.7 83 287-376 76-162 (383)
183 PRK10339 DNA-binding transcrip 57.8 31 0.00068 33.4 6.9 56 326-388 214-275 (327)
184 cd06303 PBP1_LuxPQ_Quorum_Sens 56.7 48 0.001 31.3 7.8 54 325-385 169-226 (280)
185 PF02750 Synapsin_C: Synapsin, 56.2 30 0.00066 32.2 5.9 54 69-145 50-103 (203)
186 cd06309 PBP1_YtfQ_like Peripla 56.0 74 0.0016 29.6 8.9 73 307-387 146-225 (273)
187 TIGR02417 fruct_sucro_rep D-fr 56.0 36 0.00077 32.9 6.9 87 292-388 179-278 (327)
188 cd06311 PBP1_ABC_sugar_binding 55.4 65 0.0014 30.0 8.4 86 291-385 127-221 (274)
189 cd06301 PBP1_rhizopine_binding 55.1 55 0.0012 30.4 7.8 69 308-385 146-220 (272)
190 PF13433 Peripla_BP_5: Peripla 54.9 27 0.00059 35.5 5.9 71 303-379 23-96 (363)
191 PRK10703 DNA-binding transcrip 54.4 52 0.0011 31.9 7.8 86 292-385 179-277 (341)
192 PRK14481 dihydroxyacetone kina 54.0 35 0.00076 34.3 6.4 59 331-389 233-298 (331)
193 PF01972 SDH_sah: Serine dehyd 53.9 26 0.00056 34.3 5.3 57 315-378 65-121 (285)
194 TIGR03822 AblA_like_2 lysine-2 53.7 34 0.00073 34.0 6.3 67 321-387 140-209 (321)
195 cd06299 PBP1_LacI_like_13 Liga 53.5 56 0.0012 30.1 7.6 71 307-385 138-213 (265)
196 PRK09492 treR trehalose repres 52.7 44 0.00096 32.0 6.9 84 293-387 177-269 (315)
197 cd06310 PBP1_ABC_sugar_binding 52.7 56 0.0012 30.3 7.4 52 329-387 166-221 (273)
198 PF02733 Dak1: Dak1 domain; I 52.3 27 0.00059 35.0 5.3 58 331-388 219-291 (325)
199 cd06323 PBP1_ribose_binding Pe 52.2 54 0.0012 30.2 7.2 56 325-387 160-218 (268)
200 cd06318 PBP1_ABC_sugar_binding 51.9 95 0.0021 28.9 8.9 89 292-387 124-228 (282)
201 cd06300 PBP1_ABC_sugar_binding 51.5 31 0.00068 32.1 5.5 54 326-387 165-221 (272)
202 cd06280 PBP1_LacI_like_4 Ligan 50.3 50 0.0011 30.6 6.7 54 328-388 154-213 (263)
203 cd07018 S49_SppA_67K_type Sign 50.2 47 0.001 31.0 6.4 33 324-356 25-59 (222)
204 KOG1255 Succinyl-CoA synthetas 49.8 48 0.001 32.0 6.2 68 287-357 172-244 (329)
205 TIGR00706 SppA_dom signal pept 49.3 47 0.001 30.6 6.2 45 328-375 13-59 (207)
206 TIGR02049 gshA_ferroox glutama 49.3 67 0.0015 32.8 7.5 101 28-144 192-317 (403)
207 PRK12419 riboflavin synthase s 48.8 1.2E+02 0.0026 27.2 8.4 81 303-384 28-115 (158)
208 cd06290 PBP1_LacI_like_9 Ligan 48.3 61 0.0013 29.9 7.0 53 329-388 159-217 (265)
209 KOG3432 Vacuolar H+-ATPase V1 47.6 66 0.0014 27.1 6.0 59 318-384 35-95 (121)
210 cd06302 PBP1_LsrB_Quorum_Sensi 47.4 54 0.0012 31.4 6.6 70 308-384 146-220 (298)
211 cd01545 PBP1_SalR Ligand-bindi 46.4 86 0.0019 28.8 7.7 71 308-385 141-217 (270)
212 TIGR02362 dhaK1b probable dihy 46.1 49 0.0011 33.2 6.1 59 331-389 230-295 (326)
213 COG0436 Aspartate/tyrosine/aro 45.4 72 0.0016 32.6 7.4 79 295-378 92-199 (393)
214 COG4015 Predicted dinucleotide 44.7 2.3E+02 0.0049 25.9 9.3 94 288-383 15-147 (217)
215 PF14403 CP_ATPgrasp_2: Circul 44.6 66 0.0014 33.7 7.0 50 70-145 339-391 (445)
216 cd07016 S14_ClpP_1 Caseinolyti 43.7 76 0.0017 27.7 6.4 48 327-378 14-61 (160)
217 TIGR02363 dhaK1 dihydroxyaceto 43.6 63 0.0014 32.5 6.4 59 331-389 234-299 (329)
218 cd06278 PBP1_LacI_like_2 Ligan 43.5 77 0.0017 29.0 6.8 54 327-387 155-215 (266)
219 cd01540 PBP1_arabinose_binding 43.5 81 0.0018 29.5 7.1 71 309-386 154-232 (289)
220 PRK00208 thiG thiazole synthas 43.1 34 0.00074 33.0 4.2 79 283-373 143-226 (250)
221 cd04728 ThiG Thiazole synthase 42.8 34 0.00073 33.0 4.2 79 283-373 143-226 (248)
222 cd06295 PBP1_CelR Ligand bindi 42.6 1.1E+02 0.0024 28.4 7.7 51 328-385 168-224 (275)
223 cd06267 PBP1_LacI_sugar_bindin 42.4 1.2E+02 0.0026 27.4 7.8 50 330-386 161-216 (264)
224 cd07022 S49_Sppa_36K_type Sign 41.9 85 0.0018 29.1 6.7 32 325-356 22-55 (214)
225 cd06306 PBP1_TorT-like TorT-li 41.3 84 0.0018 29.3 6.7 42 328-377 166-208 (268)
226 cd01538 PBP1_ABC_xylose_bindin 40.6 82 0.0018 29.8 6.6 52 327-385 170-226 (288)
227 cd01537 PBP1_Repressors_Sugar_ 39.2 2.6E+02 0.0056 25.0 9.6 86 291-385 118-216 (264)
228 cd06313 PBP1_ABC_sugar_binding 38.7 1.1E+02 0.0023 28.7 7.1 54 326-386 163-219 (272)
229 PRK14184 bifunctional 5,10-met 38.7 94 0.002 30.6 6.7 35 320-354 64-98 (286)
230 cd06312 PBP1_ABC_sugar_binding 38.5 56 0.0012 30.4 5.1 52 329-387 166-221 (271)
231 PTZ00375 dihydroxyacetone kina 38.3 68 0.0015 34.8 6.1 43 348-390 264-308 (584)
232 PRK14190 bifunctional 5,10-met 38.2 1E+02 0.0022 30.3 6.8 36 319-354 64-99 (284)
233 PRK08195 4-hyroxy-2-oxovalerat 38.0 2.3E+02 0.005 28.4 9.6 79 303-384 116-196 (337)
234 PF12327 FtsZ_C: FtsZ family, 37.9 64 0.0014 26.1 4.6 44 330-374 13-64 (95)
235 TIGR02637 RhaS rhamnose ABC tr 37.8 2.1E+02 0.0046 27.1 9.1 52 326-384 165-220 (302)
236 cd07021 Clp_protease_NfeD_like 37.6 87 0.0019 28.4 5.9 50 330-383 15-66 (178)
237 PRK14168 bifunctional 5,10-met 37.5 1E+02 0.0022 30.5 6.8 34 321-354 67-100 (297)
238 PF07805 HipA_N: HipA-like N-t 37.2 8.5 0.00018 30.0 -0.7 39 16-54 29-68 (81)
239 TIGR02405 trehalos_R_Ecol treh 37.0 1.4E+02 0.0031 28.6 7.7 86 293-389 174-268 (311)
240 cd01542 PBP1_TreR_like Ligand- 36.8 1.3E+02 0.0027 27.6 7.1 49 329-385 157-211 (259)
241 PRK14177 bifunctional 5,10-met 36.4 1E+02 0.0022 30.3 6.5 34 321-354 67-100 (284)
242 cd07020 Clp_protease_NfeD_1 No 36.3 1.1E+02 0.0024 27.7 6.4 50 330-383 15-66 (187)
243 PRK11468 dihydroxyacetone kina 36.0 1E+02 0.0022 31.3 6.6 42 348-389 279-322 (356)
244 COG1707 ACT domain-containing 35.9 2.5E+02 0.0055 25.6 8.3 89 293-384 85-178 (218)
245 KOG4342 Alpha-mannosidase [Car 35.3 67 0.0014 35.1 5.3 66 320-387 490-562 (1078)
246 COG1879 RbsB ABC-type sugar tr 35.0 1.6E+02 0.0034 28.5 7.7 87 292-385 159-255 (322)
247 PF14305 ATPgrasp_TupA: TupA-l 34.8 2.5E+02 0.0053 26.7 8.8 91 30-139 19-120 (239)
248 cd06356 PBP1_Amide_Urea_BP_lik 34.3 2.3E+02 0.0051 27.5 8.9 66 304-377 23-93 (334)
249 cd03418 GRX_GRXb_1_3_like Glut 33.5 80 0.0017 23.3 4.3 42 33-74 14-56 (75)
250 PRK11468 dihydroxyacetone kina 33.3 86 0.0019 31.8 5.5 72 291-378 43-127 (356)
251 cd01539 PBP1_GGBP Periplasmic 32.4 1.5E+02 0.0032 28.4 7.0 54 326-386 180-243 (303)
252 PRK14479 dihydroxyacetone kina 32.1 1E+02 0.0022 33.4 6.2 59 331-389 232-297 (568)
253 PRK14187 bifunctional 5,10-met 32.0 1.4E+02 0.003 29.6 6.7 36 319-354 64-99 (294)
254 PF02601 Exonuc_VII_L: Exonucl 31.8 3.5E+02 0.0077 26.4 9.7 90 290-382 13-114 (319)
255 COG0272 Lig NAD-dependent DNA 31.5 81 0.0017 34.7 5.3 49 30-78 236-292 (667)
256 cd06354 PBP1_BmpA_PnrA_like Pe 30.7 1.3E+02 0.0028 28.2 6.2 51 330-389 169-219 (265)
257 cd07015 Clp_protease_NfeD Nodu 30.6 99 0.0022 28.0 5.0 45 330-378 15-61 (172)
258 TIGR02181 GRX_bact Glutaredoxi 30.5 1.1E+02 0.0024 22.9 4.7 41 33-73 13-53 (79)
259 cd01391 Periplasmic_Binding_Pr 30.4 1.8E+02 0.0039 25.8 6.9 51 331-388 168-222 (269)
260 PRK14178 bifunctional 5,10-met 30.1 1.5E+02 0.0033 29.0 6.6 34 321-354 60-93 (279)
261 cd07017 S14_ClpP_2 Caseinolyti 29.6 1.9E+02 0.0042 25.7 6.8 56 320-378 10-70 (171)
262 TIGR00705 SppA_67K signal pept 29.3 1.3E+02 0.0028 32.6 6.5 54 327-382 75-132 (584)
263 PRK14182 bifunctional 5,10-met 29.0 1.8E+02 0.0039 28.6 6.8 35 320-354 63-97 (282)
264 TIGR00583 mre11 DNA repair pro 28.8 1.3E+02 0.0029 31.1 6.2 8 379-386 113-120 (405)
265 PRK10949 protease 4; Provision 28.6 1.1E+02 0.0025 33.3 6.0 53 328-382 95-151 (618)
266 PRK15408 autoinducer 2-binding 28.6 1E+02 0.0022 30.6 5.3 49 327-382 190-241 (336)
267 PRK14483 DhaKLM operon coactiv 28.2 1.1E+02 0.0023 30.9 5.2 64 291-366 42-118 (329)
268 TIGR02955 TMAO_TorT TMAO reduc 27.9 1.9E+02 0.0041 27.5 6.9 49 328-384 166-218 (295)
269 cd00114 LIGANc NAD+ dependent 27.8 1.3E+02 0.0029 29.8 5.8 36 30-65 227-263 (307)
270 PRK11706 TDP-4-oxo-6-deoxy-D-g 27.7 1.7E+02 0.0036 29.3 6.7 63 306-378 83-149 (375)
271 PF00682 HMGL-like: HMGL-like 27.3 2.4E+02 0.0052 26.1 7.3 49 307-356 113-162 (237)
272 PF00465 Fe-ADH: Iron-containi 27.1 2.1E+02 0.0045 28.7 7.2 78 292-373 22-103 (366)
273 cd06307 PBP1_uncharacterized_s 26.9 1.6E+02 0.0034 27.4 6.0 73 308-388 148-224 (275)
274 TIGR02362 dhaK1b probable dihy 26.9 1.1E+02 0.0024 30.7 5.1 72 291-378 40-124 (326)
275 PRK08636 aspartate aminotransf 26.6 2.1E+02 0.0046 28.8 7.3 85 293-378 97-211 (403)
276 PF00462 Glutaredoxin: Glutare 25.8 96 0.0021 22.1 3.4 41 34-74 14-54 (60)
277 TIGR00504 pyro_pdase pyrogluta 25.6 3.2E+02 0.0069 25.5 7.6 67 308-374 119-197 (212)
278 TIGR03278 methan_mark_10 putat 25.6 2.6E+02 0.0057 28.8 7.7 89 293-383 104-206 (404)
279 TIGR01279 DPOR_bchN light-inde 25.4 82 0.0018 32.3 4.0 29 323-351 62-90 (407)
280 cd03027 GRX_DEP Glutaredoxin ( 25.3 1.7E+02 0.0038 21.6 4.9 35 32-66 14-48 (73)
281 cd06344 PBP1_ABC_ligand_bindin 25.2 3.4E+02 0.0074 26.2 8.2 67 304-378 22-93 (332)
282 cd06304 PBP1_BmpA_like Peripla 25.1 1.5E+02 0.0032 27.5 5.5 70 308-386 142-212 (260)
283 PRK07550 hypothetical protein; 24.8 2.9E+02 0.0063 27.5 7.8 49 325-378 148-199 (386)
284 TIGR01101 V_ATP_synt_F vacuola 24.6 3.6E+02 0.0078 22.8 7.0 49 319-375 34-82 (115)
285 COG0420 SbcD DNA repair exonuc 24.5 2.1E+02 0.0046 28.9 6.8 58 330-387 22-86 (390)
286 PF00763 THF_DHG_CYH: Tetrahyd 24.3 1.2E+02 0.0026 25.4 4.2 62 293-354 31-96 (117)
287 PRK14512 ATP-dependent Clp pro 24.2 1.6E+02 0.0034 27.3 5.2 45 331-378 38-84 (197)
288 TIGR02363 dhaK1 dihydroxyaceto 24.2 1.4E+02 0.0031 30.0 5.2 72 291-378 44-128 (329)
289 PF13458 Peripla_BP_6: Peripla 23.9 2.5E+02 0.0053 26.9 6.9 69 305-379 26-97 (343)
290 TIGR02361 dak_ATP dihydroxyace 23.8 1.7E+02 0.0036 31.8 6.0 63 328-390 231-307 (574)
291 PF08886 GshA: Glutamate-cyste 23.8 57 0.0012 33.4 2.3 98 29-142 196-318 (404)
292 PF14721 AIF_C: Apoptosis-indu 23.8 46 0.00099 28.8 1.4 35 331-369 96-131 (133)
293 PRK00061 ribH 6,7-dimethyl-8-r 23.6 5.2E+02 0.011 22.9 8.8 81 303-384 30-117 (154)
294 PRK12553 ATP-dependent Clp pro 23.4 1.7E+02 0.0036 27.2 5.3 52 324-378 40-96 (207)
295 PF05368 NmrA: NmrA-like famil 23.2 5.7E+02 0.012 23.2 9.4 45 329-379 54-98 (233)
296 TIGR02634 xylF D-xylose ABC tr 23.1 1.4E+02 0.003 28.7 4.9 50 329-385 166-220 (302)
297 COG2376 DAK1 Dihydroxyacetone 23.1 2.3E+02 0.0049 28.5 6.4 58 332-389 232-294 (323)
298 PF01653 DNA_ligase_aden: NAD- 23.0 1.4E+02 0.0031 29.7 5.0 36 31-66 235-271 (315)
299 TIGR03407 urea_ABC_UrtA urea A 22.9 5E+02 0.011 25.5 9.0 66 304-375 24-92 (359)
300 PF00574 CLP_protease: Clp pro 22.8 2.6E+02 0.0057 24.8 6.4 55 321-378 18-77 (182)
301 cd06352 PBP1_NPR_GC_like Ligan 22.2 3.1E+02 0.0066 27.1 7.4 81 289-377 7-94 (389)
302 cd06277 PBP1_LacI_like_1 Ligan 21.7 2.8E+02 0.0061 25.4 6.6 37 345-388 177-218 (268)
303 cd06348 PBP1_ABC_ligand_bindin 21.5 3.2E+02 0.007 26.4 7.3 82 288-377 6-93 (344)
304 cd06268 PBP1_ABC_transporter_L 21.5 5.6E+02 0.012 23.3 8.6 84 293-385 137-225 (298)
305 PRK10936 TMAO reductase system 21.5 3E+02 0.0066 27.0 7.1 68 308-385 195-266 (343)
306 TIGR00237 xseA exodeoxyribonuc 21.2 7.2E+02 0.016 25.8 10.0 89 290-381 128-225 (432)
307 PRK14481 dihydroxyacetone kina 21.2 1.8E+02 0.0039 29.3 5.3 64 291-366 43-119 (331)
308 PRK13237 tyrosine phenol-lyase 20.8 2.8E+02 0.0061 29.2 6.9 50 325-378 158-214 (460)
309 cd06314 PBP1_tmGBP Periplasmic 20.8 3E+02 0.0066 25.4 6.7 53 326-385 159-215 (271)
310 PF04002 RadC: RadC-like JAB d 20.7 3.8E+02 0.0082 22.6 6.6 55 334-388 54-116 (123)
311 cd08184 Fe-ADH3 Iron-containin 20.6 2.6E+02 0.0056 28.1 6.4 62 307-371 41-104 (347)
312 PRK09701 D-allose transporter 20.4 3.7E+02 0.008 25.8 7.4 42 338-386 209-253 (311)
313 PF02733 Dak1: Dak1 domain; I 20.1 1E+02 0.0022 31.0 3.2 73 290-378 26-111 (325)
No 1
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.8e-99 Score=737.06 Aligned_cols=347 Identities=47% Similarity=0.753 Sum_probs=335.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
|+|||||+|++|++||||+|++.+++|+||+.++++++| ..|+|||+|+++|||||+ |||+++ |++|+++
T Consensus 1 M~lhEYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg--~~~~VvKaQV~aGGRGKa-------GGVk~~~s~~ea~~ 71 (387)
T COG0045 1 MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELG--GGPVVVKAQVHAGGRGKA-------GGVKLAKSPEEAKE 71 (387)
T ss_pred CcHHHHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhC--CCcEEEEeeeeecCcccc-------CceEEeCCHHHHHH
Confidence 899999999999999999999999999999999999995 269999999999999996 999999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecC
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~ 185 (394)
++++|+++. +|+++.|..++.+||||++++ .+|||+++..||+.++|++|+|.+||||||++++++||+|++.++|
T Consensus 72 ~a~~~lg~~---~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~id 148 (387)
T COG0045 72 AAEEILGKN---YQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVD 148 (387)
T ss_pred HHHHHhCcc---cccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeC
Confidence 999999986 699999999999999999995 5599999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCC-cEEEeeceeecCcchhccchhh
Q 016159 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGK-QLVAADAKLNFDDNAAFRQKEI 264 (394)
Q Consensus 186 p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G-~~~alDaki~ldd~a~fR~~~~ 264 (394)
|..|++++++|+++..+|+++..+.++++++.+||++|.++|++++|||||++|++| +++|+|||+.+||||.||||++
T Consensus 149 p~~g~~~~~aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~~ 228 (387)
T COG0045 149 PLTGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPDL 228 (387)
T ss_pred CccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccCcccccCcch
Confidence 999999999999999999999999999999999999999999999999999999954 8999999999999999999999
Q ss_pred hccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCC
Q 016159 265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDE 344 (394)
Q Consensus 265 ~~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~ 344 (394)
..+++.+++++.|..|++++|+|++|+||||||+|||||+|+|||+|+.+||+||||||+||+|+.+++++||+++++||
T Consensus 229 ~~~~d~~~ed~~e~~a~~~~l~yV~LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~~e~v~~a~~~il~d~ 308 (387)
T COG0045 229 AELRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGATAERVKEAFKLILSDP 308 (387)
T ss_pred hhhhcccccChhHHHhhhCCCceEEecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159 345 KVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY 386 (394)
Q Consensus 345 ~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~ 386 (394)
+||+|||||||||++||+||+||++|+++.+.++ +-+.-||-
T Consensus 309 ~vk~IfVNIfGGI~rcD~vA~GIi~Al~e~~~~vPlVVRL~GtN 352 (387)
T COG0045 309 NVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVRLEGTN 352 (387)
T ss_pred CccEEEEEEccCcCccHHHHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 9999999999999999999999999999998666 77887773
No 2
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=100.00 E-value=7.3e-96 Score=740.64 Aligned_cols=367 Identities=84% Similarity=1.258 Sum_probs=349.4
Q ss_pred hhHHhhhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159 19 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (394)
Q Consensus 19 ~~~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l 98 (394)
.+..+|.++|+|+|||+|+||++||||+|++.+++|++|+.++++++++..+|||+|+|+++|||||+||+++.+|||++
T Consensus 19 ~~~~~~~~~m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l 98 (422)
T PLN00124 19 KWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHI 98 (422)
T ss_pred hhhhhcccccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEE
Confidence 44445678899999999999999999999999999999999999999311389999999999999999998888999999
Q ss_pred C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCC
Q 016159 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPN 177 (394)
Q Consensus 99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd 177 (394)
+ + +|+++++++|+++.++++|+++.|..+++|+|+|++.+++|+|+|+++||..++|++++|.+||++||++++..||
T Consensus 99 ~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~pd 177 (422)
T PLN00124 99 VKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPE 177 (422)
T ss_pred CCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhCch
Confidence 9 7 9999999999999988999998899999999999998899999999999966679998888999999999999999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcch
Q 016159 178 MIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNA 257 (394)
Q Consensus 178 ~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a 257 (394)
++.+++++|..++++++++++++.|++++.+.+++++++.+||++|.++|++++|||||+++++|+++|+|||+.+||||
T Consensus 178 ~i~~~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~vt~~G~~valDAKi~~DdnA 257 (422)
T PLN00124 178 KIIKVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNA 257 (422)
T ss_pred heeEEecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceEEccCCCEEEEEEEECcCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHH
Q 016159 258 AFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAF 337 (394)
Q Consensus 258 ~fR~~~~~~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~ 337 (394)
.|||++++.+++++++++.|.+|++++++|++|+||||||+|||||+|+|||+|+.+||+||||+|+||+||.+++++|+
T Consensus 258 ~~R~~~~~~~~~~~~~~~~E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a~~~~v~~a~ 337 (422)
T PLN00124 258 AFRQKEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNASEQQVVEAF 337 (422)
T ss_pred hhcChhhhhccCcccCChhHHHHhhCCCceECCCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159 338 KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY 386 (394)
Q Consensus 338 ~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~ 386 (394)
+++++||+||+|||||||||++||.||+||++|++++++++ +.++.||-
T Consensus 338 ~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn 388 (422)
T PLN00124 338 KILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTN 388 (422)
T ss_pred HHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCC
Confidence 99999999999999999999999999999999999998776 88988873
No 3
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=2.3e-85 Score=656.72 Aligned_cols=338 Identities=23% Similarity=0.319 Sum_probs=310.6
Q ss_pred cCCCHHHHHHHHHHc-----CCCCCCceee-CCHHHHHHHHHH---hCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159 28 LNIHEYQGAELMAKY-----GINVPKGLAV-ASVDEVKKAIQD---AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (394)
Q Consensus 28 m~L~E~~aK~lL~~~-----GIpvp~~~~~-~s~eea~~~a~~---lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l 98 (394)
.+|||||||+||++| |||+|++.++ ++++|+.+++++ ++ ..++|||||+++|||||+ |||++
T Consensus 4 ~~l~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~--~~~~VVKaQvl~GgRGKa-------GGVk~ 74 (423)
T PLN02235 4 KKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLS--STKLVVKPDMLFGKRGKS-------GLVAL 74 (423)
T ss_pred ccccHHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhC--CCcEEEEcccccCCCccc-------CceEE
Confidence 579999999999999 9999999999 999999999988 75 235799999999999996 99999
Q ss_pred C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCC
Q 016159 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPN 177 (394)
Q Consensus 99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd 177 (394)
+ |++|+++++++|+++.++|+ ++.| ++++|||||++++.+|+|++++.||..+ .+++|++|||+||+ +||
T Consensus 75 ~~s~~Ea~~~a~~~Lg~~l~t~--g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~~--~ii~S~~GGvdIEe----~pe 145 (423)
T PLN02235 75 NLDLAQVATFVKERLGKEVEMG--GCKG-PITTFIVEPFVPHDQEFYLSIVSDRLGC--SISFSECGGIEIEE----NWD 145 (423)
T ss_pred eCCHHHHHHHHHHHhCCceEec--CCCc-cEeEEEEEecCCCcceEEEEEEEecCCC--EEEEECCCCCcccC----Chh
Confidence 9 99999999999999998764 6788 8999999999999999999999999985 49999999999996 699
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcch
Q 016159 178 MIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNA 257 (394)
Q Consensus 178 ~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a 257 (394)
++++++++|..|++++++++++..+++ ...+++.+++.+||++|.++|++++|||||++ .||+++|+|||+.+||||
T Consensus 146 ~i~k~~Id~~~gl~~~~~~~~~~~l~~--~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~-~dg~~~alDaK~~~DDnA 222 (423)
T PLN02235 146 KVKTIFLPTEAPLTSEICAPLIATLPL--EIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTL-VDGEPYPLDMRGELDDTA 222 (423)
T ss_pred HeEEEEcCCCCCCCHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHcCCeEEEecceEe-eCCCEEEEEeEEcccCCC
Confidence 999999999999999999999998875 66889999999999999999999999999999 899999999999999999
Q ss_pred hccchh-hhccCCC----CCCCHHhH------hhhcCCCeE--EccCCceeEEecChhHHHHHHHHHHHcC--CCcccee
Q 016159 258 AFRQKE-IFALRDP----TQEDPREV------AAAKADLNY--IGLDGEIGCMVNGAGLAMATMDIIKLHG--GTPANFL 322 (394)
Q Consensus 258 ~fR~~~-~~~~~~~----~~~~~~e~------~a~~~~l~y--~~l~G~Ig~~~nGaGl~m~t~D~i~~~g--g~~aNfl 322 (394)
.|||++ +..+.=+ .+.++.|. +|++++|+| ++|+||||||+|||||+|+|||+|+++| |+||||+
T Consensus 223 ~fR~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFl 302 (423)
T PLN02235 223 AFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA 302 (423)
T ss_pred cccCHhHhhhhcccccccCCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceee
Confidence 999998 5434100 23378888 777899999 9999999999999999999999999999 9999999
Q ss_pred ecCCCCCHHHHHHHHHHHh----cCCCccEEEEEccCCCCChHHHH---HHHHHHHHHcC-----Ccc--eEEeecce
Q 016159 323 DVGGNASEGQVVEAFKILT----SDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQVS-----ALD--CFGFHSNY 386 (394)
Q Consensus 323 D~gG~a~~~~~~~a~~~~l----~~~~v~~i~vni~ggi~~~d~vA---~gii~a~~~~~-----~~~--~~~~~~~~ 386 (394)
|+||+||.+++++|+++++ +||++|+|||||||||+|||+|| +||++|+++++ .++ +.+..||-
T Consensus 303 DvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN 380 (423)
T PLN02235 303 EYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPN 380 (423)
T ss_pred ecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCC
Confidence 9999999999999999998 89999999999999999999999 99999999985 333 88998873
No 4
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.6e-86 Score=615.32 Aligned_cols=364 Identities=51% Similarity=0.804 Sum_probs=354.4
Q ss_pred HHhhhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159 21 QQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (394)
Q Consensus 21 ~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~- 99 (394)
+..|+|+++|.|||+|++|.+||+.+.++.++.+..|+.++++.++ ....|+|+|+++|||||++|.+|..|||++.
T Consensus 13 ~k~~rR~LNLqEfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~--~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk 90 (412)
T KOG1447|consen 13 MKSQRRFLNLQEFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFN--AKEYVVKAQILAGGRGKGVFNNGLKGGVHITK 90 (412)
T ss_pred HHhhhhhccHHHhhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhcC--CcceEEeeeeeecCcccceecCCccceeEEec
Confidence 5568999999999999999999999999999999999999999996 3468999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeE
Q 016159 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMI 179 (394)
Q Consensus 100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i 179 (394)
++.++.+.+++|.+..+.|+||...|..+++|+|.|.+++.+|-|+.+..||+..|||++.|+.||||||.+++.+|++|
T Consensus 91 ~k~~vl~l~~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~I 170 (412)
T KOG1447|consen 91 DKNVVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELI 170 (412)
T ss_pred CHhHHHHHHHHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhc
Q 016159 180 VKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAF 259 (394)
Q Consensus 180 ~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~f 259 (394)
++.|+|...|+++.++.+|++.|+|.+....+.++-+.+||.+|..-|++.+|||||.-|++|+++|+|||+.|||||.|
T Consensus 171 fk~piDI~~gi~esq~l~~Ak~L~F~G~l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~NFDDnA~f 250 (412)
T KOG1447|consen 171 FKEPIDIFEGIKESQALRMAKNLGFVGPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEF 250 (412)
T ss_pred ccccchhccCCchHHHHHHHHhccccCcHHHHHHHHHHHHHHHHhhhcceEEEecccccCCCceEEEEeeeccCCchHhh
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHH
Q 016159 260 RQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI 339 (394)
Q Consensus 260 R~~~~~~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~ 339 (394)
||++++++.+.++.+|.|.+|.+++|+|+.++|||+|++|||||+|+|||+|..+||+||||||+||+...+++++|+++
T Consensus 251 RQKdIFamd~~eE~dPrEveAakynLnYigmDGNIaClVNGAGLAMATmDiIkLnGGePANFLDvGGgV~EdqV~~Af~i 330 (412)
T KOG1447|consen 251 RQKDIFAMDDKEENDPREVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLNGGEPANFLDVGGGVKEDQVYQAFKI 330 (412)
T ss_pred hhcceeecccccccCchhhhhhhcCcceeeccCceEEEEccchhhhheeeeEEecCCCCcceeeccCcccHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159 340 LTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY 386 (394)
Q Consensus 340 ~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~ 386 (394)
+++||+|++|||||||||.+|..||.||+.|.++++.++ +.+..||-
T Consensus 331 lTaDPkVk~iLvNiFGGIVNCAtIANGiv~A~~kl~LnVPlVVRLEGTN 379 (412)
T KOG1447|consen 331 LTADPKVKAILVNIFGGIVNCATIANGIVKACRKLELNVPLVVRLEGTN 379 (412)
T ss_pred hccCCceeEEEEehhcceehhHhHhhHHHHHHHhhcCCCcEEEEEcCCC
Confidence 999999999999999999999999999999999999888 88888874
No 5
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=100.00 E-value=1e-83 Score=650.35 Aligned_cols=347 Identities=45% Similarity=0.751 Sum_probs=331.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCC-cEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~-PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
|+|+|||+|+||++||||||++.+++|++|+.++++++| + |||||+|++.+||||+ |||+++ |+++++
T Consensus 1 m~l~E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg---~p~~VvK~qv~~g~Rgk~-------GGV~l~~~~~e~~ 70 (392)
T PRK14046 1 MDIHEYQAKELLASFGVAVPRGALAYSPEQAVYRARELG---GWHWVVKAQIHSGARGKA-------GGIKLCRTYNEVR 70 (392)
T ss_pred CCCcHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcC---CCcEEEEeeeccCCCCcC-------CeEEEECCHHHHH
Confidence 899999999999999999999999999999999999998 6 5699999999999985 999999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecC
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~ 185 (394)
+++++|+++.++++|+++.|..+++|+||+++++++|+|+|+++||.|+.|++++|.+||++||++++++||++++++++
T Consensus 71 ~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~ 150 (392)
T PRK14046 71 DAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVE 150 (392)
T ss_pred HHHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEEeCCCCCchHHHhhhChhheEEEEcC
Confidence 99999999988899999999999999999999999999999999999985556666799999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhh
Q 016159 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF 265 (394)
Q Consensus 186 p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~ 265 (394)
|..+++++++++++..+|+++...+++.+++.+||++|.++|++++|||||+++.+|+++|+|+|+.+||||.|||++++
T Consensus 151 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~~Ddna~~r~~~~~ 230 (392)
T PRK14046 151 PAVGLQQFQAREIAFGLGLDIKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIA 230 (392)
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeECccCCchhcChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCC
Q 016159 266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK 345 (394)
Q Consensus 266 ~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~ 345 (394)
.++++++.++.|.+|++++|+|++|+||||||+||||++|+|||+|..+|++|+||+|+||+++++++.++++++++||+
T Consensus 231 ~~~~~~~~~~~e~~a~~~~l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a~~e~~~~aL~~ll~Dp~ 310 (392)
T PRK14046 231 EMRDPSQEDPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGASPERVAKAFRLVLSDRN 310 (392)
T ss_pred hhcCcccCChhHHHHHHcCCceEccCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCCCHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEccCCCCChHHHHHHHHHHHHHcCCc--ceEEeec
Q 016159 346 VKAILVNIFGGIMKCDVIASGIVNAAKQVSAL--DCFGFHS 384 (394)
Q Consensus 346 v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~--~~~~~~~ 384 (394)
|++||||++||+++|+.+|++|+++.++.+.+ .+.++.|
T Consensus 311 VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G 351 (392)
T PRK14046 311 VKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAG 351 (392)
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCC
Confidence 99999999999999999999999999985333 2555555
No 6
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.5e-85 Score=626.76 Aligned_cols=366 Identities=58% Similarity=0.876 Sum_probs=355.8
Q ss_pred hhHHhhhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159 19 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (394)
Q Consensus 19 ~~~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l 98 (394)
+++.||.|++.+|||.+.+||.+||+.+|+++++.|||||.++++++| +.-+|+|+|+++|||||++|.||..|||++
T Consensus 14 q~~~~~~r~L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg--~kdlVikAQ~lAgGRgKGtF~SglkgGV~i 91 (434)
T KOG2799|consen 14 QSYFQAERSLGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLG--SKDLVIKAQVLAGGRGKGTFDSGLKGGVKI 91 (434)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhC--CcceEEEeeecccCcccCCcCcCcCCceEE
Confidence 677888899999999999999999999999999999999999999996 356999999999999999999999999999
Q ss_pred C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCC
Q 016159 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPN 177 (394)
Q Consensus 99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd 177 (394)
+ +|+|+++.+.+|+++.++|+||++.|..++.|+|.+......|+|++++.||.+.+|+++.|..||++||.+++++||
T Consensus 92 Vf~p~Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pd 171 (434)
T KOG2799|consen 92 VFSPQEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPD 171 (434)
T ss_pred EeChHHHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCcc
Confidence 9 999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCC-cEEEeeceeecCcc
Q 016159 178 MIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGK-QLVAADAKLNFDDN 256 (394)
Q Consensus 178 ~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G-~~~alDaki~ldd~ 256 (394)
.+.+.|++...|++++.|..+...||+++....++++.+.+||++|...|++.+|||||+.+.++ .++|.|+|+.+|||
T Consensus 172 ai~k~pi~~~~Gls~~~a~~v~~~lgfs~~~~~~a~~~~~kly~vf~~~dat~veinpl~e~t~d~~v~c~dak~~fd~n 251 (434)
T KOG2799|consen 172 AIIKKPIDNNTGLSPEIACLVADKLGFSPDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDN 251 (434)
T ss_pred chhcccccccCCCCHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHhhccceeEEecchhhcccCceeeechhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998877 69999999999999
Q ss_pred hhccchhhhccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHH
Q 016159 257 AAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEA 336 (394)
Q Consensus 257 a~fR~~~~~~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a 336 (394)
|.|||+.++.|+|+.++++.|..|.++++||+.++|+||||+||||++|+|||+|+.+||.||||+|+||+|+.|+++++
T Consensus 252 a~fRq~~iF~~rd~~QEd~re~~aak~~ln~igldG~igC~vngaglamaTmdiiklhgg~panfldVGg~Atve~v~ea 331 (434)
T KOG2799|consen 252 AAFRQKKIFLLRDLSQEDPREVTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVEQVREA 331 (434)
T ss_pred HHHHhhhhhhccchhhcCchhhhHHHhccceeccCCccceeeccchhhhhheeeeeecCCCCcceeeeCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159 337 FKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY 386 (394)
Q Consensus 337 ~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~ 386 (394)
|++|++||++.+|||||||||++||.+|.|++.+.+++.+++ |.+..||-
T Consensus 332 f~litsd~kv~ailvnifGgi~rCDvia~Giv~aar~l~~~ipiv~rlqgt~ 383 (434)
T KOG2799|consen 332 FSLITSDKKVMAILVNIFGGIMRCDVIAFGIVLAARELELNIPIVVRLQGTR 383 (434)
T ss_pred HHHHhcChhHHHHHHHHhcCeeeccceecchhhhhhhhhcCCCEEEEecCCc
Confidence 999999999999999999999999999999999999998777 99988874
No 7
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=100.00 E-value=1.3e-77 Score=606.69 Aligned_cols=349 Identities=47% Similarity=0.759 Sum_probs=330.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
|+|+||++|++|++||||||++.++++++|+.++++++| .+|+|||++++.||||++ |||+++ |++++.+
T Consensus 1 m~L~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig--~~PvVvK~~~~~ggkg~~-------GGV~~~~~~~e~~~ 71 (386)
T TIGR01016 1 MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLG--AGPVVVKAQVHAGGRGKA-------GGVKVAKSKEEARA 71 (386)
T ss_pred CCCcHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhC--CCcEEEEecccCCCCccC-------ceEEEeCCHHHHHH
Confidence 889999999999999999999999999999999999985 369999999888888874 999999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p 186 (394)
++++++++.+.++|++++|..+++++||||+++++|+|+|++.||...+|+|++|.+||++||++++.+|++++++.++|
T Consensus 72 a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p 151 (386)
T TIGR01016 72 AAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDP 151 (386)
T ss_pred HHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCC
Confidence 99999987777777766788889999999999999999999999984469999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhhc
Q 016159 187 FNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266 (394)
Q Consensus 187 ~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~~ 266 (394)
..++++++++.+...+++++.+.+++.+++.+||++|.++|++++|||||+++++|+++|+|||+.+||||.|||+++..
T Consensus 152 ~~~~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~a~~r~~~~~~ 231 (386)
T TIGR01016 152 LTGLLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDLEE 231 (386)
T ss_pred CcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccchhhhcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCc
Q 016159 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKV 346 (394)
Q Consensus 267 ~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v 346 (394)
+++.++.++.|.+|+++||+|++|+||||||+||||++|+|||++..+|++|+||+|+||++++++++++++++++||++
T Consensus 232 ~~~~~~~~~~e~~~~~~~l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a~~~~~~~al~~l~~dp~v 311 (386)
T TIGR01016 232 MRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGASAERVREALKLVLSDKSV 311 (386)
T ss_pred hhcCCcCChhhhHHHHcCCcEEccCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecc
Q 016159 347 KAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSN 385 (394)
Q Consensus 347 ~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~ 385 (394)
++||||++||+++|+.+|++|+++.++++.++ +.++-|+
T Consensus 312 d~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~~g~ 352 (386)
T TIGR01016 312 KVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLEGT 352 (386)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 99999999999999999999999999987433 5555553
No 8
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=100.00 E-value=1.7e-71 Score=562.28 Aligned_cols=346 Identities=49% Similarity=0.779 Sum_probs=323.5
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh-CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l-g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
|+|+||++|++|++||||+|++.++++++|+.++++++ | ||+|+|++.+.+||+|+ |||+++ |+++++
T Consensus 1 m~l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g---~PvVvK~~~~~ggk~~~-------GGV~l~~~~~e~~ 70 (388)
T PRK00696 1 MNLHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGG---GVWVVKAQVHAGGRGKA-------GGVKLAKSPEEAR 70 (388)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCC---CcEEEEEeeCCCCCccc-------ccEEEcCCHHHHH
Confidence 88999999999999999999999999999999999999 7 99999999888888874 999999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceee-eeccCCCcceeeccccCCCeEEEEec
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII-IGCSKGGTSIEDLAEKYPNMIVKVPI 184 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi-~~s~~GGv~iE~~~~~~pd~i~~~~v 184 (394)
+++++|+++.+.++++++.|..+.+++||||++++.|+|+|+++|+.|+ |+| ++|..||+++|.+++++|++++++.+
T Consensus 71 ~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fg-pvv~~~s~~GG~~vE~~~d~~~~~~~~~~l 149 (388)
T PRK00696 71 EFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATR-RVVFMASTEGGMDIEEVAEETPEKIHKVAI 149 (388)
T ss_pred HHHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCC-ceEEEEeCCCCcchhhhcccCcceeEEEEc
Confidence 9999999886656666667888899999999999999999999999997 666 57779999999999999999889999
Q ss_pred CCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhh
Q 016159 185 DVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEI 264 (394)
Q Consensus 185 ~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~ 264 (394)
+|..+++.++|++|++.+++++.+.+++++++.+||++|.+++++++|||||+++++|+++|+|||+.+||||.|||+++
T Consensus 150 ~p~~~~~~~~a~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ld~~a~~r~~~~ 229 (388)
T PRK00696 150 DPLTGLQPFQAREIAFKLGLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPDL 229 (388)
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEeecCCccccCHhH
Confidence 99988999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCC
Q 016159 265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDE 344 (394)
Q Consensus 265 ~~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~ 344 (394)
.++++.++.++.|.+++.++|+|++++||||||+||||++|+|+|++..+|++|+||+|++|+++++.++++++++++||
T Consensus 230 ~~~~~~~~~~~~e~~~~~~~~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~~~e~~~~aL~~l~~d~ 309 (388)
T PRK00696 230 AELRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGATAERVAEAFKIILSDP 309 (388)
T ss_pred HhhcCCCcCChhhhHHHhcCCcEEecCCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCCCHHHHHHHHHHHhcCC
Confidence 99988888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEccCCCCChHHHHHHHHHHHHHcCCc-c-eEEeec
Q 016159 345 KVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL-D-CFGFHS 384 (394)
Q Consensus 345 ~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~-~-~~~~~~ 384 (394)
++++||+|++|++++|+.+|++|+++.++.+.+ + +.++.|
T Consensus 310 ~vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~g 351 (388)
T PRK00696 310 NVKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLEG 351 (388)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 999999999999999999999999999984222 2 555555
No 9
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=100.00 E-value=3.4e-51 Score=378.25 Aligned_cols=201 Identities=46% Similarity=0.734 Sum_probs=180.8
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
+|||||||+||++||||+|++.+++|++|+.++++++| ..++|||||+++|||||+ |||+++ |++|++++
T Consensus 1 ~l~EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~--~~~~VvKaQvl~GgRGK~-------GgVk~~~s~~ea~~~ 71 (202)
T PF08442_consen 1 NLHEYQAKELLRKYGIPVPRGVVATSPEEAREAAKELG--GKPLVVKAQVLAGGRGKA-------GGVKIAKSPEEAKEA 71 (202)
T ss_dssp BE-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHT--TSSEEEEE-SSSSTTTTT-------TCEEEESSHHHHHHH
T ss_pred CchHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC--CCcEEEEEeEeecCcccC-------CceeecCCHHHHHHH
Confidence 58999999999999999999999999999999999997 247899999999999996 999999 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~ 187 (394)
+++|+++.+.|+||++.|..+++|||||++++.+|||++++.||+.++|++++|.+|||+||++++++||++.++++||.
T Consensus 72 a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~ 151 (202)
T PF08442_consen 72 AKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPT 151 (202)
T ss_dssp HHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTT
T ss_pred HHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceee
Q 016159 188 NGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAE 238 (394)
Q Consensus 188 ~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv 238 (394)
.|++++++++++..+|+++...+++++++.+||++|.++|++++|||||++
T Consensus 152 ~g~~~~~~~~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~~ 202 (202)
T PF08442_consen 152 EGLTPYQAREIAKKLGLPGKLAEQLADILKKLYRLFREYDATLLEINPLVE 202 (202)
T ss_dssp TB--HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999975
No 10
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=100.00 E-value=1.1e-36 Score=285.61 Aligned_cols=205 Identities=24% Similarity=0.283 Sum_probs=148.6
Q ss_pred hhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC--CH
Q 016159 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KK 101 (394)
Q Consensus 24 ~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~--s~ 101 (394)
+.++..|+|+++|++|+.||||+|++.+++|++|+.++++++| ||||+|..++. =.+| +++|||+++ |+
T Consensus 4 ~~g~~~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig---~PvvlKi~sp~-i~HK-----sd~GgV~L~l~~~ 74 (222)
T PF13549_consen 4 AEGRGWLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIG---FPVVLKIVSPD-IAHK-----SDVGGVRLNLNSP 74 (222)
T ss_dssp HTT--EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH----SSEEEEEE-TT----H-----HHHT-EEEEE-SH
T ss_pred cCCCCccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhC---CCEEEEEecCC-CCcC-----CCCCcEEECCCCH
Confidence 4567789999999999999999999999999999999999999 99999997642 1234 378999998 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeeeC-CCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEE
Q 016159 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS-LVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180 (394)
Q Consensus 102 ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~-~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~ 180 (394)
+++++++++|..+.. .. .++..+++|+||+|++ .+.|+.+|+.+|+.|| |+|+|| .||+.+|.++|. .
T Consensus 75 ~~v~~a~~~l~~~~~---~~-~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FG-Pvv~~G-~GG~~vE~~~D~----~- 143 (222)
T PF13549_consen 75 EEVREAFERLRERVA---AH-HPGARIDGVLVQEMAPSGGRELIVGVRRDPQFG-PVVMFG-LGGIFVELLKDV----A- 143 (222)
T ss_dssp HHHHHHHHHHHHHHH---HH--TT----EEEEEE------EEEEEEEEEETTTE-EEEEEE-E-STTHHHH-------E-
T ss_pred HHHHHHHHHHHHHHH---Hh-CCCCccceEEEEEcccCCcEEEEEEEEECCCCC-CEEEEc-CCCceeeeecce----E-
Confidence 999999999987642 11 1345678999999998 8999999999999995 999999 999999999854 3
Q ss_pred EEecCCCCCCCHHHHHHHHHhCC----------CCcccHHHHHHHHHHHHHHhhcC-CcceeeecceeeccCCcEEEeec
Q 016159 181 KVPIDVFNGITDEDAAKVVDGLA----------PKVADRNDAIEQVKKLYKLFCES-DCTLLEINPLAETSGKQLVAADA 249 (394)
Q Consensus 181 ~~~v~p~~gl~~~~a~~l~~~lg----------~~~~~~~~l~~~l~~L~~l~~e~-d~~~lEINPLvv~~~G~~~alDa 249 (394)
+.++| ++..+|++|++++. .++.|++++++++.+++++..++ ++.++||||++++++| ++|+||
T Consensus 144 -~~l~P---l~~~~a~~mi~~l~~~~lL~G~RG~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g-~~avDa 218 (222)
T PF13549_consen 144 -FRLPP---LSEADAREMIRELRAYPLLRGYRGRPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDG-AVAVDA 218 (222)
T ss_dssp -EEESS-----HHHHHHHHHTSTTHHHHH-------B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS--EEE--E
T ss_pred -EeeCC---CCHHHHHHHHHHHHhHHhhcccCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCc-eEEEEE
Confidence 55677 69999999999883 35679999999999999999987 7889999999999988 999999
Q ss_pred eeec
Q 016159 250 KLNF 253 (394)
Q Consensus 250 ki~l 253 (394)
+|.+
T Consensus 219 ~i~l 222 (222)
T PF13549_consen 219 RIRL 222 (222)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9875
No 11
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=99.66 E-value=3e-16 Score=139.09 Aligned_cols=90 Identities=41% Similarity=0.619 Sum_probs=84.2
Q ss_pred EecChhHHHHHHHHHHHc--------------CCCccceeecCCCCC----------HHHHHHHHHHHhcCCCccEEEEE
Q 016159 297 MVNGAGLAMATMDIIKLH--------------GGTPANFLDVGGNAS----------EGQVVEAFKILTSDEKVKAILVN 352 (394)
Q Consensus 297 ~~nGaGl~m~t~D~i~~~--------------gg~~aNflD~gG~a~----------~~~~~~a~~~~l~~~~v~~i~vn 352 (394)
|+|||||+|.|||+|..+ |+.++||+|+||++. ++...++++.+++||++++||||
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 689999999999999999 999999999999999 79999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHcC---Ccc--eEEeecce
Q 016159 353 IFGGIMKCDVIASGIVNAAKQVS---ALD--CFGFHSNY 386 (394)
Q Consensus 353 i~ggi~~~d~vA~gii~a~~~~~---~~~--~~~~~~~~ 386 (394)
+++|+.+|+++|.++++++++.. .++ +-++.||.
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~ 119 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTN 119 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTT
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeec
Confidence 99999999999999999999987 555 77788874
No 12
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.46 E-value=5.7e-12 Score=115.86 Aligned_cols=175 Identities=23% Similarity=0.235 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcE-EEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKEL-VVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~Pv-VvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
++..||++|.+||||++++..++++++|.++.++.+ .|+ |||++.+++| | ||.++ |.+|+.+++
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~---~p~~ViKadGla~G--K---------GV~i~~~~~eA~~~l 67 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQG---YPYVVIKADGLAAG--K---------GVVIADDREEALEAL 67 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSHHHHHHHHHHHS---SSEEEEEESSSCTT--T---------SEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcC---CCceEEccCCCCCC--C---------EEEEeCCHHHHHHHH
Confidence 356799999999999999999999999999999997 788 9999998864 5 69999 999999999
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec------------cCCCcceeeccccCC
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC------------SKGGTSIEDLAEKYP 176 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s------------~~GGv~iE~~~~~~p 176 (394)
++++.... .|..-++|+|||++. |.|+.+.+..|....-|+...- ..|||-
T Consensus 68 ~~~~~~~~-------fg~~~~~vvIEE~l~-G~E~S~~a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMG--------- 130 (194)
T PF01071_consen 68 REIFVDRK-------FGDAGSKVVIEEFLE-GEEVSLFALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMG--------- 130 (194)
T ss_dssp HHHHTSST-------TCCCGSSEEEEE----SEEEEEEEEEESSEEEEEEEBEEEEEEETTTEEEEESESE---------
T ss_pred HHhccccc-------cCCCCCcEEEEeccC-CeEEEEEEEEcCCeEEECcchhccccccCCCCCCCCCCcc---------
Confidence 99986432 344447999999998 9999999999987643433322 112221
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcc-eeeecceeeccCCcEEEeeceeecCc
Q 016159 177 NMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCT-LLEINPLAETSGKQLVAADAKLNFDD 255 (394)
Q Consensus 177 d~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~-~lEINPLvv~~~G~~~alDaki~ldd 255 (394)
.++|...++.+.-+++.+.+ +..++..|.+- ..+.. .|-++ +++|.+| ..++.-.+.|.|
T Consensus 131 ------a~sp~p~~~~~~~~~i~~~I---------~~pt~~~l~~e--g~~y~GvLy~g-lMlt~~G-p~vlEfN~RfGD 191 (194)
T PF01071_consen 131 ------AYSPVPFITDELLEEIIEEI---------LEPTLKGLKKE--GIPYRGVLYAG-LMLTEDG-PKVLEFNVRFGD 191 (194)
T ss_dssp ------EEESTTTS-HHHHHHHHHHT---------HHHHHHHHHHT--T---EEEEEEE-EEEETTE-EEEEEEESSGST
T ss_pred ------ceeecccCCHHHHHHHHHHH---------HHHHHHHHHhc--CCCcceeeeee-eEEeCCC-cEEEEEeCCCCC
Confidence 11232225555555544432 12233333331 11332 46666 7788777 888777666655
No 13
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.36 E-value=1.5e-13 Score=145.35 Aligned_cols=312 Identities=17% Similarity=0.106 Sum_probs=192.7
Q ss_pred hccCCCHHHHHHHHHHcC----CCCCCce------eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCccc
Q 016159 26 RRLNIHEYQGAELMAKYG----INVPKGL------AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGG 95 (394)
Q Consensus 26 ~~m~L~E~~aK~lL~~~G----Ipvp~~~------~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GG 95 (394)
.++..-+++.++.|.+|| +||++.. .|.+.......+.+++ +++|.|..++...+ + ..++|
T Consensus 20 ~~~~~vg~~i~~nL~~~g~g~i~PVnp~~~~v~G~~ay~s~~~lp~~~dla---v~~v~~~~~~~i~~-~-----~~~kG 90 (598)
T COG1042 20 ERPGKLGYEILRNLLEYGQGKIYPVNPKYDEVLGVKAYTSVADLPDAPDLA---VIVVPAKVVPEIVH-E-----LGEKG 90 (598)
T ss_pred CCcchhHHHHHHHHHhcCCCceEecCccccccccccccchHhhCCCCCCee---EEEechhhhHHHHH-H-----hhccC
Confidence 456678999999999999 9998887 5665555555555666 78888765442111 1 12345
Q ss_pred EEEC--CHHHHHHHHHHHhccc--ccccccCCCCcccceEEEEeeeCCCeeEEEE--EEEeccCCceeeeeccCCCccee
Q 016159 96 VHIV--KKEEVEDLAGKMLGQI--LVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA--IMLDRKTAGPIIIGCSKGGTSIE 169 (394)
Q Consensus 96 V~l~--s~ee~~~a~~~~l~~~--l~~~q~~~~g~~v~~vlVee~v~~~~E~ylg--i~~Dr~~~~Pvi~~s~~GGv~iE 169 (394)
|+.+ ....++++.++..... +.. ........++.++..+..+..+| .+.++.+. +. +. -|+..++
T Consensus 91 v~~~i~is~gf~e~~~~~~~~e~~~~~-----~a~~~~~rligPn~~G~~~~~~glna~f~p~~~-~~--~~-g~~afvs 161 (598)
T COG1042 91 VKGAIVISAGFREAGEEGMELEKELVE-----AARKYGMRIIGPNCLGLINPIIGLNATFDPVFG-LG--RG-GGGAFVS 161 (598)
T ss_pred CceEEEechhhhHHhhhHhHHHHHHHH-----HHHhcCceEeccccccccccccccccccCcccc-cc--cC-CCeEEEE
Confidence 6555 4455555555432211 100 01122578889998878888888 77776664 33 33 4556676
Q ss_pred eccccCCCeEEEEecCCCCCCCHHHHHHHHH----hCC------CCcccHHHHHHHHHHHHHHhhcC-Ccceeeecceee
Q 016159 170 DLAEKYPNMIVKVPIDVFNGITDEDAAKVVD----GLA------PKVADRNDAIEQVKKLYKLFCES-DCTLLEINPLAE 238 (394)
Q Consensus 170 ~~~~~~pd~i~~~~v~p~~gl~~~~a~~l~~----~lg------~~~~~~~~l~~~l~~L~~l~~e~-d~~~lEINPLvv 238 (394)
...+- . +.+.+. +... +|-. ++| ..+.....+.+...+...++.|. +....++||...
T Consensus 162 qsgav----~--~~il~~---~~~~--~~g~s~~vs~gn~ad~~~~d~~~~~~~D~~tk~i~Ly~E~~~~~r~fl~~a~~ 230 (598)
T COG1042 162 QSGAV----S--FAILDW---ANED--GMGFSIKVSLGNAADRDESDLLEYLADDPRTKAIGLYIEGVKDGRKFLNAARA 230 (598)
T ss_pred echHH----H--Hhccch---hhhc--CCceeEEEeecchhhcCchHhHHHHhhCccceEEEEEeccchhHHHHHHHHHH
Confidence 65431 1 112221 1111 1110 011 10111111122222222233332 222345666655
Q ss_pred ccCCc-EEEeeceeecCc------------------chhccchhhhccCCCCCC-CHHhHhhhcCCCeEEccCC-ceeEE
Q 016159 239 TSGKQ-LVAADAKLNFDD------------------NAAFRQKEIFALRDPTQE-DPREVAAAKADLNYIGLDG-EIGCM 297 (394)
Q Consensus 239 ~~~G~-~~alDaki~ldd------------------~a~fR~~~~~~~~~~~~~-~~~e~~a~~~~l~y~~l~G-~Ig~~ 297 (394)
...++ ++++|+...... +|+|||.++.+..+..+. +..+.++. +..+.| +++++
T Consensus 231 ~~~~kpii~lk~gr~~~~akAa~shTgslag~~~~y~Aa~~~agvir~~~~~elf~~~k~l~~-----~~~~~g~~~~iv 305 (598)
T COG1042 231 AERKKPIIALKAGRSEAGAKAAASHTGSLAGSDEAYDAAFKQAGVIRVESIEELFDAAKALSH-----QPPPAGDRVAII 305 (598)
T ss_pred HhcCCCEEEEeccCCHHHHHHHhcccccccccchhhHHHHHhhCceeccChHHHHHHHHHhcc-----CCCCCCcceeEE
Confidence 44322 777775544321 467788777665544443 33344443 556667 99999
Q ss_pred ecChhHHHHHHHHHHHcCCCc---------------------cceeecCCCCCHHHHHHHHHHHhcCCCccEEEE-EccC
Q 016159 298 VNGAGLAMATMDIIKLHGGTP---------------------ANFLDVGGNASEGQVVEAFKILTSDEKVKAILV-NIFG 355 (394)
Q Consensus 298 ~nGaGl~m~t~D~i~~~gg~~---------------------aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~v-ni~g 355 (394)
+||+|.+.++.|.+...|++. .|++|+.|+++.++|.++++.+++|++++++++ ++++
T Consensus 306 tn~Gg~gvla~D~l~~~g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~~~~~~llvi~~~~ 385 (598)
T COG1042 306 TNGGGPGVLAADALEERGLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVIVLPP 385 (598)
T ss_pred ecCCCccccchhHHHHcCCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhccCCceEEEEecCC
Confidence 999999999999999999873 399999999999999999999999999999777 8889
Q ss_pred CCCChHHHHHHHHHHH
Q 016159 356 GIMKCDVIASGIVNAA 371 (394)
Q Consensus 356 gi~~~d~vA~gii~a~ 371 (394)
..+.....|+.++.+.
T Consensus 386 ~~~~~~~~a~~~~~~~ 401 (598)
T COG1042 386 ASADPEETAEAIIRAT 401 (598)
T ss_pred CCCCchhhhHHHHHhh
Confidence 8888888999999973
No 14
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=99.28 E-value=1.3e-11 Score=127.52 Aligned_cols=118 Identities=23% Similarity=0.307 Sum_probs=98.5
Q ss_pred chhccchhhhccCCCCCC-CHHhHhhhcCCCeEEccCC-ceeEEecChhHHHHHHHHHHHcCCCcc--------------
Q 016159 256 NAAFRQKEIFALRDPTQE-DPREVAAAKADLNYIGLDG-EIGCMVNGAGLAMATMDIIKLHGGTPA-------------- 319 (394)
Q Consensus 256 ~a~fR~~~~~~~~~~~~~-~~~e~~a~~~~l~y~~l~G-~Ig~~~nGaGl~m~t~D~i~~~gg~~a-------------- 319 (394)
++.|||.++.+.++.+++ +..+.++. ...+.| +|++++|+||+++++.|.+..+|.+++
T Consensus 263 ~a~~~~~Gv~~~~~~~el~~~~~~l~~-----~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~l 337 (447)
T TIGR02717 263 DAAFKQAGVIRADSIEELFDLARLLSN-----QPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNIL 337 (447)
T ss_pred HHHHHHCCeEEeCCHHHHHHHHHHHhc-----CCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhC
Confidence 368999999888876665 44555554 233445 999999999999999999999999865
Q ss_pred -------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEc-cCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 320 -------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNI-FGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 320 -------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni-~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
||+|+++.++++.+.++++++++||+++++++++ +++.+.++.+|+.++++.++..-|+
T Consensus 338 p~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~~~KP 404 (447)
T TIGR02717 338 PPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKSNEKP 404 (447)
T ss_pred ccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999854 5778889999999999999863334
No 15
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.25 E-value=2.6e-10 Score=106.69 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCCCCCceee--CCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 32 EYQGAELMAKYGINVPKGLAV--ASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 32 E~~aK~lL~~~GIpvp~~~~~--~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
...+++++++.|+|+|++... .+.+|+.++|+++| |||++||.. ||.|+ |.+++ |.+++.+++
T Consensus 2 k~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iG---yPVliKas~--ggGG~---------gm~iv~~~~eL~~~~ 67 (211)
T PF02786_consen 2 KIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIG---YPVLIKASA--GGGGR---------GMRIVHNEEELEEAF 67 (211)
T ss_dssp HHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH----SSEEEEETT--SSTTT---------SEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcC---CceEEeecc--ccccc---------ccccccchhhhhhhh
Confidence 457899999999999999998 99999999999999 999999954 55465 68889 999999999
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
++....... ..| -..++||+++...+|+-+-+..|+.. -++.++
T Consensus 68 ~~~~~~s~~-----~fg--~~~v~iek~i~~~reiEvqvi~D~~g--n~~~~~ 111 (211)
T PF02786_consen 68 ERAQRESPA-----AFG--DGPVLIEKFIEGAREIEVQVIRDGKG--NVVHLG 111 (211)
T ss_dssp HHHHHHHHH-----HHS--TS-EEEEE--SSEEEEEEEEEEETTS--EEEEEE
T ss_pred hhccccCcc-----ccc--cceEEEeeehhhhhhhhhhhhhcccc--ceeeee
Confidence 887654310 012 25899999999889999999999875 344444
No 16
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.23 E-value=5.4e-11 Score=119.36 Aligned_cols=110 Identities=28% Similarity=0.312 Sum_probs=94.2
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
++.=++..+|++|++||||++.+..++++++|.+..++.| .|+||||+.+++| | ||+++ +.+|+.
T Consensus 99 ~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g---~piVVKadGLaaG--K---------GV~V~~~~eeA~ 164 (428)
T COG0151 99 QLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKG---APIVVKADGLAAG--K---------GVIVAMTLEEAE 164 (428)
T ss_pred HHHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHcC---CCEEEecccccCC--C---------CeEEcCCHHHHH
Confidence 4667888999999999999999999999999999999998 8999999999874 6 69999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceee
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII 158 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi 158 (394)
+++++|+.... .|.....|+|||+++ |.|+.+-...|...--|+.
T Consensus 165 ~a~~~~l~~~~-------fg~~g~~VVIEEfL~-GeE~S~~a~~DG~~v~p~p 209 (428)
T COG0151 165 AAVDEMLEGNA-------FGSAGARVVIEEFLD-GEEFSLQAFVDGKTVIPMP 209 (428)
T ss_pred HHHHHHHhhcc-------ccCCCCcEEEEeccc-ceEEEEEEEEcCCeEEECc
Confidence 99999986542 232335799999999 8999999999987643433
No 17
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.17 E-value=1.9e-10 Score=120.56 Aligned_cols=175 Identities=20% Similarity=0.292 Sum_probs=117.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
+..-+++.+|++|+++|||+|++.. +.+.+|+.++++++| ||+|+||.. ||-|+ |++++ |++|
T Consensus 111 ~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~ig---yPvvIKp~~--GgGG~---------Gv~iv~~~~e 176 (499)
T PRK08654 111 EAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIG---YPVIIKASA--GGGGI---------GMRVVYSEEE 176 (499)
T ss_pred HHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhC---CCEEEEeCC--CCCCC---------eEEEeCCHHH
Confidence 3446889999999999999999875 689999999999998 999999964 44455 79999 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~ 183 (394)
+.++++....... . ..+ -..++||++++..+|+.+.+..|... .++.++ ..... +++++ .++...
T Consensus 177 L~~a~~~~~~~a~----~-~f~--~~~v~vE~~I~~~r~ieVqvl~d~~G--~vv~l~-~recs---iqrr~-qk~ie~- 241 (499)
T PRK08654 177 LEDAIESTQSIAQ----S-AFG--DSTVFIEKYLEKPRHIEIQILADKHG--NVIHLG-DRECS---IQRRH-QKLIEE- 241 (499)
T ss_pred HHHHHHHHHHHHH----H-hCC--CCeEEEEeCCCCCcEEEEEEEEcCCC--CEEEEe-eeccc---cccCc-cceEEE-
Confidence 9999887643221 0 012 14799999998889999999999754 455443 21222 23344 234333
Q ss_pred cCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeecc
Q 016159 184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS 240 (394)
Q Consensus 184 v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~ 240 (394)
.|...++++ .|.++++.+|+.+.- . .+++ +.+.+..++||||.+..+
T Consensus 242 -~Pa~~l~~~~~~~l~~~A~~l~~algy~g~g--t-VEfl------~~~g~~yflEiNpRlqve 295 (499)
T PRK08654 242 -APSPIMTPELRERMGEAAVKAAKAINYENAG--T-VEFL------YSNGNFYFLEMNTRLQVE 295 (499)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHcCCCCce--E-EEEE------EECCcEEEEEEECCCCCC
Confidence 232225553 345566777765420 0 0111 124467899999998643
No 18
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.16 E-value=3.2e-10 Score=128.48 Aligned_cols=167 Identities=22% Similarity=0.255 Sum_probs=115.2
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
....+....|++|+++|||+|++..+++.+|+.++++++| ||+||||....| |+ |+.++ |++|+.
T Consensus 124 ~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~ig---yPvVVKP~~g~g--G~---------Gv~iv~~~eEL~ 189 (1068)
T PRK12815 124 QKGEDRERFRALMKELGEPVPESEIVTSVEEALAFAEKIG---FPIIVRPAYTLG--GT---------GGGIAENLEELE 189 (1068)
T ss_pred HHhcCHHHHHHHHHHcCcCCCCceeeCCHHHHHHHHHHcC---CCEEEEECcCCC--CC---------ceEEECCHHHHH
Confidence 3446777889999999999999999999999999999998 999999975333 44 46677 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeecc---ccCCCeEEEE
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLA---EKYPNMIVKV 182 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~---~~~pd~i~~~ 182 (394)
+++++.++.. ....++|||++++.+|+++.+.+|.... .+++.. +|.+. -.+.+.+
T Consensus 190 ~a~~~~~~~s-----------~~~~vLVEe~I~G~~E~sv~v~rD~~g~-~~~~~~------~e~~~p~gi~tG~s~--- 248 (1068)
T PRK12815 190 QLFKQGLQAS-----------PIHQCLLEESIAGWKEIEYEVMRDRNGN-CITVCN------MENIDPVGIHTGDSI--- 248 (1068)
T ss_pred HHHHHHHhcC-----------CCCeEEEEEccCCCeEEEEEEEEcCCCC-EEEEEe------ceecccccccCCceE---
Confidence 9998876532 1258999999997799999999998654 333332 22221 1112232
Q ss_pred ecCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc---CCcceeeecceee
Q 016159 183 PIDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE 238 (394)
Q Consensus 183 ~v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e---~d~~~lEINPLvv 238 (394)
.+.|...+++. .+.++++.||+.+... .+++.+ .+..++||||.+-
T Consensus 249 ~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~----------vef~l~~~~g~~~ViEINPR~~ 304 (1068)
T PRK12815 249 VVAPSQTLTDDEYQMLRSASLKIISALGVVGGCN----------IQFALDPKSKQYYLIEVNPRVS 304 (1068)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceE----------EEEEEECCCCcEEEEEEecCcc
Confidence 23454445554 4455667777643211 123333 2467899999864
No 19
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.15 E-value=9.3e-10 Score=112.72 Aligned_cols=102 Identities=26% Similarity=0.312 Sum_probs=84.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCc-EEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~P-vVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
..-+++..|++|+++|||+|++..+.+.+|+.++++++| +| +|+||+...| |+ ||.++ |.+++.
T Consensus 101 ~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~g---~P~~VvKp~~~~g--g~---------Gv~~v~~~~el~ 166 (423)
T TIGR00877 101 LEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEKG---APAIVVKADGLAA--GK---------GVIVAKTNEEAI 166 (423)
T ss_pred HHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcC---CCeEEEEECCCCC--CC---------CEEEECCHHHHH
Confidence 345888999999999999999999999999999999998 99 9999975443 33 69999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++++.... |.....++|||+++ +.|+++.+..|..
T Consensus 167 ~~~~~~~~~~~--------g~~~~~~lvEe~i~-G~E~sv~~~~dg~ 204 (423)
T TIGR00877 167 KAVEEILEQKF--------GDAGERVVIEEFLD-GEEVSLLAFVDGK 204 (423)
T ss_pred HHHHHHHHHhc--------CCCCCeEEEEECcc-CceEEEEEEEcCC
Confidence 99998865421 22225799999998 6899999998854
No 20
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.14 E-value=3.8e-09 Score=108.97 Aligned_cols=104 Identities=28% Similarity=0.233 Sum_probs=85.4
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
++.-++..+|++|+++|||+|++..+++.+++.+++++++ +|+||||.... .|| ||.++ |.+|+.
T Consensus 98 ~l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~g---~PvVVKp~~~~--~Gk---------GV~iv~~~~el~ 163 (434)
T PLN02257 98 ALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQG---APIVVKADGLA--AGK---------GVVVAMTLEEAY 163 (434)
T ss_pred HHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC---CCEEEEcCCCC--CCC---------CEEEECCHHHHH
Confidence 4556899999999999999999999999999999999998 99999998543 355 69999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++++.... .|.....++|||+++ +.|+.+.+..|..
T Consensus 164 ~a~~~~~~~~~-------fg~~~~~vlIEefi~-G~E~Sv~~~~dG~ 202 (434)
T PLN02257 164 EAVDSMLVKGA-------FGSAGSEVVVEEFLD-GEEASFFALVDGE 202 (434)
T ss_pred HHHHHHHhhhh-------ccCCCCeEEEEECCC-CCEEEEEEEECCC
Confidence 99998864321 222235799999998 5699998888854
No 21
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.12 E-value=4e-09 Score=103.17 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=85.6
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
....+++..|++|+++|||+|++..+.+.+++..++++++ +|+|+||....+ |+ ||..+ |.+++.
T Consensus 94 ~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~~---~P~ivKP~~g~~--s~---------Gv~~v~~~~el~ 159 (304)
T PRK01372 94 ALAMDKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLG---LPLVVKPAREGS--SV---------GVSKVKEEDELQ 159 (304)
T ss_pred HHHhCHHHHHHHHHHCCCCCCCEEEEeCcchHHHHHhhcC---CCEEEeeCCCCC--CC---------CEEEeCCHHHHH
Confidence 3446889999999999999999999999999888999998 999999976332 33 68888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCC
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGG 165 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GG 165 (394)
++++++... + ..++||||++ ++|+.+.+..|... |++-....++
T Consensus 160 ~~~~~~~~~----------~---~~~lvEe~i~-G~E~~v~vi~~~~~--~~~~~~~~~~ 203 (304)
T PRK01372 160 AALELAFKY----------D---DEVLVEKYIK-GRELTVAVLGGKAL--PVIEIVPAGE 203 (304)
T ss_pred HHHHHHHhc----------C---CcEEEEcccC-CEEEEEEEECCCcc--ceEEEEecCC
Confidence 888776421 1 4799999998 89999999877544 4443332343
No 22
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.07 E-value=4.5e-09 Score=109.37 Aligned_cols=171 Identities=15% Similarity=0.169 Sum_probs=112.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
+.-+++.+|++|+++|||+|++. .+.+.+|+.++++++| ||+|+||.. ||-|+ ||+++ |++|+
T Consensus 115 ~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~ig---yPvvvKp~~--gggg~---------Gv~~v~~~~eL 180 (467)
T PRK12833 115 TMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIG---YPLMIKAAA--GGGGR---------GIRVAHDAAQL 180 (467)
T ss_pred HhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhC---CCEEEEECC--CCCCC---------eEEEECCHHHH
Confidence 44589999999999999999985 8899999999999998 999999965 33355 79999 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEec
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v 184 (394)
.++++....... . ..+ -..++||+|++.++|+.+.+..|.. + .+.++-.. ..+.+++ +++...
T Consensus 181 ~~a~~~~~~~~~---~--~~~--~~~vlvEefi~~~~ei~v~v~~dg~-~-~~~~~~~~-----~~~~r~~-~ki~e~-- 243 (467)
T PRK12833 181 AAELPLAQREAQ---A--AFG--DGGVYLERFIARARHIEVQILGDGE-R-VVHLFERE-----CSLQRRR-QKILEE-- 243 (467)
T ss_pred HHHHHHHHHHHH---H--hcC--CCcEEEEecCCCCEEEEEEEEeCCC-c-EEEEEEee-----cccccCC-ccEEEE--
Confidence 998877543211 0 012 1469999999888999999998875 2 34333211 1122222 344443
Q ss_pred CCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc---CCcceeeecceeec
Q 016159 185 DVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAET 239 (394)
Q Consensus 185 ~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e---~d~~~lEINPLvv~ 239 (394)
.|...++++ .+.++++.+|+.+.-. .+++.+ .+..++||||....
T Consensus 244 ~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~----------vEf~~~~~~g~~~~iEvNpR~~~ 298 (467)
T PRK12833 244 APSPSLTPAQRDALCASAVRLARQVGYRGAGT----------LEYLFDDARGEFYFIEMNTRIQV 298 (467)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCcCcce----------EEEEEecCCCCEEEEEEECCCCc
Confidence 222235543 3445566666653100 011212 34789999998753
No 23
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.06 E-value=1.3e-10 Score=123.28 Aligned_cols=118 Identities=23% Similarity=0.314 Sum_probs=102.3
Q ss_pred hccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeec-CCCCCCcccCCCcccEEEC-CHHH
Q 016159 26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILA-GGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 26 ~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~-ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
+...+.|+++++++.+|||++|++ ++.+++|+.++++.++ |..++. .| | +++|||.++ +..+
T Consensus 467 ~~~~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~~--------Kl~s~~i~h--k-----sev~gv~l~~~~~~ 530 (598)
T COG1042 467 GGTTLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESIG--------KLRSPDIDH--K-----SEVGGVMLNRTADA 530 (598)
T ss_pred CccccCchhhhhHHHHhcCccccc-ccCCHHHHHHHHHHhh--------hccCCccch--h-----hhccceeecCcHHH
Confidence 345689999999999999999999 9999999999999983 554332 22 3 378999999 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccc
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAE 173 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~ 173 (394)
++++++.++.+ . ..+.+++||+|.. .|+++++..|+.|+ |++++| .||+.+|.+.+
T Consensus 531 v~~a~~~~~~~---------p-a~i~g~lvq~m~~--~E~~vgv~~dp~fg-p~i~~G-~Gg~~ve~l~d 586 (598)
T COG1042 531 VEKAADDILAR---------P-ARIAGVLVQTMAK--LELIVGVKNDPTFG-PLILFG-EGGIEVEVLKD 586 (598)
T ss_pred HHHHHHhHhcc---------c-chhhhhhhHhhhh--ccceeeccCCCcch-hHHHhc-CCceEEEeecc
Confidence 99999999865 2 4678999999998 99999999999996 999999 99999999985
No 24
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.06 E-value=1.6e-09 Score=112.79 Aligned_cols=173 Identities=17% Similarity=0.247 Sum_probs=115.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
+..-+++.+|++|.++|||+|++.. +.+.+|+.++++++| ||+||||.. ||-|+ ||.++ |++|
T Consensus 110 ~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~ig---yPvvvKp~~--ggGg~---------Gv~~v~~~~e 175 (472)
T PRK07178 110 RRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIG---YPVMLKATS--GGGGR---------GIRRCNSREE 175 (472)
T ss_pred HHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcC---CcEEEEeCC--CCCCC---------CceEeCCHHH
Confidence 3446789999999999999998864 789999999999998 999999965 33344 68899 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~ 183 (394)
+.++++....... + ..+ ...++||++++.++|+.+.+..|.... .+.++. ....+ .+++ .++...
T Consensus 176 L~~a~~~~~~~~~---~--~~~--~~~v~iE~~i~~~~eiev~v~~d~~G~-~v~~~e--r~~s~---~~~~-~~~~e~- 240 (472)
T PRK07178 176 LEQNFPRVISEAT---K--AFG--SAEVFLEKCIVNPKHIEVQILADSHGN-VVHLFE--RDCSI---QRRN-QKLIEI- 240 (472)
T ss_pred HHHHHHHHHHHHH---H--hcC--CCCEEEEEcCCCCeEEEEEEEEECCCC-EEEEEc--cccce---EecC-cceEEE-
Confidence 9998887643321 0 012 136999999988899999999986543 443332 11222 2223 223222
Q ss_pred cCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhh--cCCcceeeecceeec
Q 016159 184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFC--ESDCTLLEINPLAET 239 (394)
Q Consensus 184 v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~--e~d~~~lEINPLvv~ 239 (394)
.|...++++ .+.++++.+|+.+.- . .+++. +.+..++||||.+..
T Consensus 241 -~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~--~--------vEf~~d~~g~~y~iEiNpRl~~ 294 (472)
T PRK07178 241 -APSPQLTPEQRAYIGDLAVRAAKAVGYENAG--T--------VEFLLDADGEVYFMEMNTRVQV 294 (472)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHcCCCcee--E--------EEEEEeCCCCEEEEEEeCCcCC
Confidence 232235553 456677777765410 0 12333 335789999999754
No 25
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.06 E-value=1.6e-09 Score=111.97 Aligned_cols=171 Identities=18% Similarity=0.210 Sum_probs=111.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~--~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
..-+++..|++|+++|||+|++ ..+++.+|+.++++++| ||+||||... +.|+ ||.++ |.+|+
T Consensus 112 ~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g---~PvvvKP~~g--~gs~---------Gv~iv~~~~el 177 (451)
T PRK08591 112 LMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIG---YPVIIKATAG--GGGR---------GMRVVRTEAEL 177 (451)
T ss_pred HhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcC---CCEEEEECCC--CCCc---------eEEEECCHHHH
Confidence 3457899999999999999987 47789999999999998 9999999653 3344 79999 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEec
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v 184 (394)
.+++++....... ..+ -..++||||++.++|+.+.+..|... .++.++ ..+. .....+ .++...
T Consensus 178 ~~~~~~~~~~~~~-----~~~--~~~vlvEe~i~g~~e~~v~v~~d~~g--~~~~~~---~~~~-~~~~~~-~~~~~~-- 241 (451)
T PRK08591 178 EKAFSMARAEAKA-----AFG--NPGVYMEKYLENPRHIEIQVLADGHG--NAIHLG---ERDC-SLQRRH-QKVLEE-- 241 (451)
T ss_pred HHHHHHHHHHHHH-----hcC--CCCEEEEeCCCCCcEEEEEEEEcCCC--CEEEEe---cccc-cceecc-eeEEEE--
Confidence 9999886532210 011 14699999998778999999998754 454443 1111 111111 122222
Q ss_pred CCCCCCCH-------HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceee
Q 016159 185 DVFNGITD-------EDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAE 238 (394)
Q Consensus 185 ~p~~gl~~-------~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv 238 (394)
.|...++. ..+.++++.+|+.+... .+++.+ .+..++||||..-
T Consensus 242 ~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~----------vEf~~~~~g~~~viEINpR~~ 294 (451)
T PRK08591 242 APSPAITEELRRKIGEAAVKAAKAIGYRGAGT----------IEFLYEKNGEFYFIEMNTRIQ 294 (451)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEcCCCCEEEEEEECCCC
Confidence 23223454 34455667777653100 122333 3477999999874
No 26
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.05 E-value=1e-08 Score=106.10 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=86.8
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
++.-+++..|++|+++|||+|++. ++.+.+|+.++++++| ||+||||....| |+ ||+++ |++|
T Consensus 111 ~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig---~PvvvKP~~g~g--s~---------Gv~~v~~~~e 176 (449)
T TIGR00514 111 RLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIG---YPVIIKATAGGG--GR---------GMRVVREPDE 176 (449)
T ss_pred HHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhC---CCEEEEeCCCCC--CC---------ccEEECCHHH
Confidence 445688999999999999999874 6789999999999998 999999975433 44 68899 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
+.++++....... .+ .+ ...++||||++.++|+.+.+..|... .++.++
T Consensus 177 l~~~~~~~~~~~~--~~---~~--~~~vlvEe~i~g~~e~~v~v~~d~~g--~~~~~~ 225 (449)
T TIGR00514 177 LVKSISMTRAEAK--AA---FG--NDGVYIEKYIENPRHVEIQVLADKYG--NAIYLG 225 (449)
T ss_pred HHHHHHHHHHHHH--Hh---CC--CCCEEEEECCCCCeEEEEEEEEcCCC--CEEEEe
Confidence 9999887654221 00 11 24799999998789999999998643 344443
No 27
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.04 E-value=1.8e-09 Score=108.22 Aligned_cols=169 Identities=21% Similarity=0.235 Sum_probs=114.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
..-+..-.|+.|++.|+|+| +.++.+.+++.+.++.+| +|++|||-.-.||. |..++ |.+|+.+
T Consensus 113 iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig---~PvIVrP~~~lGG~-----------G~~i~~n~eel~~ 177 (400)
T COG0458 113 IAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIG---YPVIVKPSFGLGGS-----------GGGIAYNEEELEE 177 (400)
T ss_pred hhhhHHHHHHHHHHcCCCCC-ccccccHHHHhhhHhhcC---CCEEEecCcCCCCC-----------ceeEEeCHHHHHH
Confidence 33556678999999999999 779999999999999999 99999997644443 34466 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p 186 (394)
.....+... +++.+|+||++.+++|+...+.+|.... +++.++ .+-.+---+. +-|++ .+.|
T Consensus 178 ~~~~~l~~s-----------~~~~vl~eesi~G~ke~e~ev~rd~~~n-~ivvc~-men~dp~gvh--tgdsi---~vap 239 (400)
T COG0458 178 IIEEGLRAS-----------PVEEVLIEESIIGWKEFEYEVVRDGKDN-CIVVCN-MENLDPMGVH--TGDSI---TVAP 239 (400)
T ss_pred HHHhccccC-----------ccccceeeeeecCceEEEEEEEEeCCCC-EEEEEe-CCcccccccc--cccee---eecc
Confidence 888876543 4579999999999999999999999875 555554 4433221111 11333 3445
Q ss_pred CCCCCH--HHH-----HHHHHhCCCCcccHHHHHHHHHHHHHHhhcC---Ccceeeecceeec
Q 016159 187 FNGITD--EDA-----AKVVDGLAPKVADRNDAIEQVKKLYKLFCES---DCTLLEINPLAET 239 (394)
Q Consensus 187 ~~gl~~--~~a-----~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~---d~~~lEINPLvv~ 239 (394)
...+++ ++. -+.++.+|..+...- |+..+. +...+|+||.+-.
T Consensus 240 aqtl~d~eyq~~r~~~~~iir~igi~G~~ni----------Q~av~~~~~~~~viEvNpRvSr 292 (400)
T COG0458 240 AQTLTDKEYQMLRDAAIKVIREIGIEGGCNI----------QFAVDPGGGELYVIEINPRVSR 292 (400)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcccCCCce----------eEEEcCCCceEEEEEecCCcCc
Confidence 444444 222 234556665432222 222333 4578999999764
No 28
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=99.04 E-value=4.3e-11 Score=120.66 Aligned_cols=286 Identities=19% Similarity=0.119 Sum_probs=194.4
Q ss_pred CcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC------Cee
Q 016159 70 KELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL------VNE 142 (394)
Q Consensus 70 ~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~------~~E 142 (394)
...|.|++.+.+.|+|. |-|.+. +..+..++.+.+.+.... -.+..| +..-..||+++.+ -.|
T Consensus 80 ~rsv~k~~m~~~k~~ki-------~lvAiiAegvpe~~~~kl~~~a~~k--~~~iiG-PaTvggVePg~fkignt~g~~d 149 (600)
T KOG1254|consen 80 TRSVAKPDMLALKRGKI-------GLVAIIAEGVPEADTRKLRAGAEVK--GVGIIG-PATVGGVEPGVFKIGNTGGMMD 149 (600)
T ss_pred hhhhhcchHHHhhcCcc-------eEEEEEecCCcHHHHHHHHhccccc--cceEEe-eeeeccccCCccccCCCCcchh
Confidence 46789999888889984 778888 666666666666554320 011223 2356788999865 579
Q ss_pred EEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCCCCC----CHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 016159 143 MYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI----TDEDAAKVVDGLAPKVADRNDAIEQVKK 218 (394)
Q Consensus 143 ~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~~gl----~~~~a~~l~~~lg~~~~~~~~l~~~l~~ 218 (394)
.|+.+..+|.. .++.||..|||++|+... +.++.-. |.+++ +.+-..-++.+ ++....+.+.++++.
T Consensus 150 nil~~klyR~G--sv~~vS~sGGmsnE~nn~----isrtt~g-~~egiaiggd~~pgSTl~dh--i~r~q~~~~vk~Iv~ 220 (600)
T KOG1254|consen 150 NILNSKLYRPG--SVIYVSRSGGMSNELNNI----ISRTTDG-PYEGIAIGGDRYPGSTLIDH--IPREQHDPLVKFIVV 220 (600)
T ss_pred hhhhhcccCCc--cEEEEecCCCcchhhhhh----hhheecc-ceeeeeccCCCccCchHhhh--hhhhhccChhheEEe
Confidence 99999999975 799999999999998653 2233211 11110 11222223332 223345678999999
Q ss_pred HHHHhhcCCcceeeec-------ceeeccCCc---EEEeeceeecCcchhccchhhhc-----cCCC-----CC------
Q 016159 219 LYKLFCESDCTLLEIN-------PLAETSGKQ---LVAADAKLNFDDNAAFRQKEIFA-----LRDP-----TQ------ 272 (394)
Q Consensus 219 L~~l~~e~d~~~lEIN-------PLvv~~~G~---~~alDaki~ldd~a~fR~~~~~~-----~~~~-----~~------ 272 (394)
|+.++-+.+.+.+|+| |+++-.-|. .+-+|.....|+.+.|..-+-+. +++. ++
T Consensus 221 Lgevgg~~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~ 300 (600)
T KOG1254|consen 221 LGEVGGDEEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGA 300 (600)
T ss_pred ehhhcccceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhh
Confidence 9999999999999999 998854442 56788899999887665533221 1100 00
Q ss_pred ---------------CCH--------HhHhhhcCCCeEEccCCceeEEecCh-hHHHHHHHHHHHcCC--CccceeecCC
Q 016159 273 ---------------EDP--------REVAAAKADLNYIGLDGEIGCMVNGA-GLAMATMDIIKLHGG--TPANFLDVGG 326 (394)
Q Consensus 273 ---------------~~~--------~e~~a~~~~l~y~~l~G~Ig~~~nGa-Gl~m~t~D~i~~~gg--~~aNflD~gG 326 (394)
... -|..+....+..++.+|+||+++.|+ |..+.+.|+....|- +.+|+-.++|
T Consensus 301 ~i~~~~e~lv~~Grvvp~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sl 380 (600)
T KOG1254|consen 301 DIQETYEFLVPFGRVVPKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSL 380 (600)
T ss_pred hhccchhcccccceecCcccCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEcc
Confidence 000 01122233566788999999999999 999999999988775 6899999999
Q ss_pred CCCHHHHHH----HHHHHh---cCCCccEEEEEccCCCCChHHHH---HHHHHHHHHcCC
Q 016159 327 NASEGQVVE----AFKILT---SDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQVSA 376 (394)
Q Consensus 327 ~a~~~~~~~----a~~~~l---~~~~v~~i~vni~ggi~~~d~vA---~gii~a~~~~~~ 376 (394)
-+...++.+ -+++++ .|-+.++.+ +.|||+++...| .+|+.++.+.+-
T Consensus 381 lw~~~~lp~Ya~kfie~~~m~~aDhgp~Vsg--a~ntI~~~ra~kdl~sslv~gLltigd 438 (600)
T KOG1254|consen 381 LWFQRRLPQYARKFIEICTMLTADHGPAVSG--AGNTIANFRAGKDLFSSLVRGLLTIGD 438 (600)
T ss_pred ccccccchHHHHHHHHHHhhccCCCCceeEe--ccCceEEeccHHHHHHHHHHHHhhhhh
Confidence 999777654 466766 244555555 678999877665 889999887654
No 29
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.03 E-value=2e-09 Score=110.83 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=85.9
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
++.-++..+|++|+++|||+|++..+++.+|+.+++++++ +|+||||....+ || ||.++ |.+|+.
T Consensus 104 ~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~---~PvVVKp~~~~~--gk---------GV~vv~~~eel~ 169 (426)
T PRK13789 104 QVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEM---LPIVIKADGLAA--GK---------GVTVATEKKMAK 169 (426)
T ss_pred HHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------cEEEECCHHHHH
Confidence 3446899999999999999999999999999999999998 999999986544 45 69999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++++.... .|..-..++|||+++ +.|+.+.+..|..
T Consensus 170 ~a~~~~~~~~~-------~g~~~~~vlIEEfl~-G~E~Sv~~~~dg~ 208 (426)
T PRK13789 170 RALKEIFKDKK-------FGQSGNQVVIEEFME-GQEASIFAISDGD 208 (426)
T ss_pred HHHHHHHhhcc-------ccCCCCeEEEEECcC-CeEEEEEEEECCC
Confidence 99999874321 232224799999998 6899999988754
No 30
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.01 E-value=2.9e-09 Score=120.68 Aligned_cols=107 Identities=22% Similarity=0.271 Sum_probs=86.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
..-+.+..|++|+++|||+|++..+++.+|+.++++++| ||+||||.. |+.|+ |+.++ |++|+.+
T Consensus 124 ~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig---yPvIVKP~~--g~gg~---------Gv~iv~~~eeL~~ 189 (1050)
T TIGR01369 124 KAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKEIG---YPVIVRPAF--TLGGT---------GGGIAYNREELKE 189 (1050)
T ss_pred HhCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHhC---CCeEEECCC--CCCCC---------CeEEECCHHHHHH
Confidence 345778889999999999999999999999999999998 999999974 33344 57788 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
++++.+... ....++|||++++.+|+.+.+.+|... .++.++
T Consensus 190 ~~~~~~~~s-----------~~~~vlVEe~I~G~~Eiev~v~rd~~g--~~~~~~ 231 (1050)
T TIGR01369 190 IAERALSAS-----------PINQVLVEKSLAGWKEIEYEVMRDSND--NCITVC 231 (1050)
T ss_pred HHHHHHhcC-----------CCCcEEEEEcccCceEEEEEEEEeCCC--CEEEEe
Confidence 988876432 125799999999779999999999754 344443
No 31
>PLN02735 carbamoyl-phosphate synthase
Probab=99.01 E-value=5e-09 Score=118.86 Aligned_cols=167 Identities=21% Similarity=0.291 Sum_probs=112.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
...+....|++|+++|||+|++..+++.+|+.++++++| .||+||||....||+ |+.++ |.+|+.+
T Consensus 141 ~~~DK~~~k~~l~~~GIpvp~~~~v~s~eea~~~~~~iG--~yPvVVKP~~~~GG~-----------Gv~iv~n~eEL~~ 207 (1102)
T PLN02735 141 KAEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDIG--EFPLIIRPAFTLGGT-----------GGGIAYNKEEFET 207 (1102)
T ss_pred HhcCHHHHHHHHHHCCCCCCCeeEeCCHHHHHHHHHHhC--CCCEEEEeCCCCCCC-----------ceEEECCHHHHHH
Confidence 346778899999999999999999999999999999884 379999997644443 46688 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccc---cCCCeEEEEe
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAE---KYPNMIVKVP 183 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~---~~pd~i~~~~ 183 (394)
++++.+... ....++|||++.+.+|+.+.+.+|.... ++.++. +|.+.. ..-+.+.
T Consensus 208 a~~~a~~~s-----------~~~~VLVEe~I~G~kE~ev~Vl~D~~g~--~i~v~~-----ie~~dp~gvh~G~s~~--- 266 (1102)
T PLN02735 208 ICKAGLAAS-----------ITSQVLVEKSLLGWKEYELEVMRDLADN--VVIICS-----IENIDPMGVHTGDSIT--- 266 (1102)
T ss_pred HHHHHHhcC-----------CCCeEEEEEecCCCeEEEEEEEEcCCCC--EEEEee-----EEEEcCCccccCCEEE---
Confidence 998865322 1258999999996699999999996543 333331 333210 1113322
Q ss_pred cCCCCCCCHH-------HHHHHHHhCCCC-cccHHHHHHHHHHHHHHhhc---CCcceeeecceee
Q 016159 184 IDVFNGITDE-------DAAKVVDGLAPK-VADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE 238 (394)
Q Consensus 184 v~p~~gl~~~-------~a~~l~~~lg~~-~~~~~~l~~~l~~L~~l~~e---~d~~~lEINPLvv 238 (394)
+.|...+++. .+.++++.||+. +... .+++.+ .+..++||||.+-
T Consensus 267 vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~n----------Vqf~l~~~~g~~~ViEVNPR~s 322 (1102)
T PLN02735 267 VAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSN----------VQFAVNPVDGEVMIIEMNPRVS 322 (1102)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceE----------EEEEEECCCCcEEEEEecCCCC
Confidence 2343335542 344556777763 3100 123332 3577999999875
No 32
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.01 E-value=2.3e-08 Score=100.19 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=81.9
Q ss_pred hccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 26 ~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
-+..-+++..|++|+++|||+|++..+.+.+++.++++++| +|+|+||... |..|+ ||.++ |++|+
T Consensus 93 ~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~~-g~~g~---------Gv~~v~~~~el 159 (352)
T TIGR01161 93 LAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELG---FPVVLKARTG-GYDGR---------GQYRIRNEADL 159 (352)
T ss_pred HHHhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHcC---CCEEEEeCCC-CCCCC---------CEEEECCHHHH
Confidence 34556888999999999999999999999999999999998 9999999642 11244 68888 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
.++++++. . ..++||||++.+.|+.+.+.++...
T Consensus 160 ~~a~~~~~------------~---~~~lvEe~I~~~~E~sv~~~~~~~G 193 (352)
T TIGR01161 160 PQAAKELG------------D---RECIVEEFVPFERELSVIVARSADG 193 (352)
T ss_pred HHHHHhcC------------C---CcEEEEecCCCCeEEEEEEEEcCCC
Confidence 98887742 1 2699999999889998888776543
No 33
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.00 E-value=2.8e-09 Score=109.61 Aligned_cols=173 Identities=21% Similarity=0.263 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
=++..+|+++++.|+|++++.- +.+.+|+.++++++| |||+|||.. ||-|+ |++++ +.+++.+
T Consensus 114 gdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iG---yPVivKa~~--GgGg~---------G~r~v~~~~el~~ 179 (449)
T COG0439 114 GDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIG---YPVIVKAAA--GGGGR---------GMRVVRNEEELEA 179 (449)
T ss_pred hhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcC---CCEEEEECC--CCCcc---------cEEEECCHHHHHH
Confidence 4688999999999999999873 466799999999998 999999965 44344 79999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p 186 (394)
++..+.+... ...|. ..+++|+++...+-+.+.+.-|... -+|-.+ +=.+. +++++...+...|. |
T Consensus 180 a~~~~~~ea~-----~~fg~--~~v~iEk~i~~~rhievqv~gD~~g--~~i~l~-eRdcs---iqrr~qkvieeaps-p 245 (449)
T COG0439 180 AFEAARGEAE-----AAFGN--PRVYLEKFIEGPRHIEVQVLGDGHG--NVIHLG-ERDCS---IQRRHQKVIEEAPS-P 245 (449)
T ss_pred HHHHHHHHHH-----HhcCC--CcEEeeeeccCCceEEEEEEEcCcc--cEEEEE-eccCC---CcCCccceeeecCC-C
Confidence 9999876542 01232 3599999998777888999999875 344444 22233 35555333333332 2
Q ss_pred CCCCCHHHHHHH--------HHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC
Q 016159 187 FNGITDEDAAKV--------VDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG 241 (394)
Q Consensus 187 ~~gl~~~~a~~l--------~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~ 241 (394)
.+++ +.+.. ++.+|+.+ +.++.-|+.. +.+..++|+||.+....
T Consensus 246 --~~~~-e~r~~i~~~a~~a~~~~gY~g------agtvEfl~~~--~~~~yfiEmN~Rlqveh 297 (449)
T COG0439 246 --LLTE-ELREKIGEAAVRAAKLIGYRG------AGTVEFLYDS--NGEFYFIEMNTRLQVEH 297 (449)
T ss_pred --CCCH-HHHHHHHHHHHHHHHhcCCCC------CceEEEEEeC--CCCEEEEEEecccccCc
Confidence 2443 33332 33334432 1112222222 35788999999988654
No 34
>PRK08462 biotin carboxylase; Validated
Probab=99.00 E-value=5.7e-09 Score=107.77 Aligned_cols=173 Identities=19% Similarity=0.274 Sum_probs=110.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
+..-+++..|++|+++|||+|++. .+.+.+++.++++++| ||+||||....| |+ ||.++ |++|
T Consensus 113 ~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g---~PvvvKP~~g~g--s~---------Gv~~v~~~~e 178 (445)
T PRK08462 113 ALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIG---YPVILKAAAGGG--GR---------GMRVVEDESD 178 (445)
T ss_pred HHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcC---CCEEEEeCCCCC--CC---------CeEEECCHHH
Confidence 344688999999999999999865 6789999999999998 999999965333 44 69899 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~ 183 (394)
+.+++........ .+ .+. ..++|||+++.++|+.+.+..|... -++.++ .....+ ...++..+ ..
T Consensus 179 L~~~~~~~~~~~~--~~---~~~--~~vlvEe~i~g~~e~~v~v~~~~~g--~~~~~g-~~~~~~---~~~~~~~~-~~- 243 (445)
T PRK08462 179 LENLYLAAESEAL--SA---FGD--GTMYMEKFINNPRHIEVQILGDKHG--NVIHVG-ERDCSL---QRRHQKLI-EE- 243 (445)
T ss_pred HHHHHHHHHHHHH--hc---cCC--CcEEEeccCCCCeEEEEEEEECCCC--CEEEEE-eccccc---eecccceE-EE-
Confidence 9988866433211 00 111 3699999998788998999888643 344443 211222 11121121 11
Q ss_pred cCCCCCCCH-------HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceeec
Q 016159 184 IDVFNGITD-------EDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAET 239 (394)
Q Consensus 184 v~p~~gl~~-------~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv~ 239 (394)
.|...+++ ..+.++++.+|+.+... .+++.+ .+..++||||....
T Consensus 244 -~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~----------ve~~~~~~g~~~viEiNpR~~~ 297 (445)
T PRK08462 244 -SPAVVLDEKTRERLHETAIKAAKAIGYEGAGT----------FEFLLDSNLDFYFMEMNTRLQV 297 (445)
T ss_pred -cCCCCCCHHHHHHHHHHHHHHHHHcCCCCcce----------EEEEEeCCCCEEEEEEECCcCc
Confidence 23222343 23445566677643100 133333 25779999998753
No 35
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.99 E-value=1.1e-08 Score=100.18 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=74.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
.+..+++.+|++|+++|||+|++..+.+.. ...+.++ ||+||||.. +|.++ ||.++ |++|+.
T Consensus 94 ~l~~DK~~~k~~l~~~gIptp~~~~~~~~~---~~~~~~~---~P~vVKP~~--ggss~---------Gv~~v~~~~eL~ 156 (296)
T PRK14569 94 VITMDKMISKEILMHHRMPTPMAKFLTDKL---VAEDEIS---FPVAVKPSS--GGSSI---------ATFKVKSIQELK 156 (296)
T ss_pred HHHHCHHHHHHHHHHCCCCCCCeEEEchhh---hhHhhcC---CCEEEEeCC--CCCCc---------CeEEcCCHHHHH
Confidence 355789999999999999999998876422 2346677 999999954 55555 69899 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
++.++... ...++||||++ ++|+.+++..|...
T Consensus 157 ~a~~~~~~--------------~~~~lvEefI~-G~E~tv~vl~~~~~ 189 (296)
T PRK14569 157 HAYEEASK--------------YGEVMIEQWVT-GKEITVAIVNDEVY 189 (296)
T ss_pred HHHHHHHh--------------cCCEEEEcccc-cEEEEEEEECCcCc
Confidence 88877531 13689999998 79999999876543
No 36
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.99 E-value=4.4e-09 Score=119.46 Aligned_cols=166 Identities=20% Similarity=0.292 Sum_probs=112.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
...+.+..|++|+++|||+|++..+++.+|+.++++++| ||+||||.. |..|+ |+.++ |++|+.+
T Consensus 125 ~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig---~PvVVKP~~--g~gg~---------Gv~iv~~~eeL~~ 190 (1066)
T PRK05294 125 KAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAEEIG---YPVIIRPSF--TLGGT---------GGGIAYNEEELEE 190 (1066)
T ss_pred HhcCHHHHHHHHHHCCcCCCCeeeeCCHHHHHHHHHHcC---CCeEEEcCC--CCCCC---------CeEEECCHHHHHH
Confidence 445778889999999999999999999999999999998 999999974 33344 57788 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEE---Ee
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK---VP 183 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~---~~ 183 (394)
++++.+... ....++|||++++.+|+.+.+.+|.... ++.+.. +|... |..++. ..
T Consensus 191 a~~~~~~~s-----------~~~~vlvEe~I~G~~Eisv~v~rd~~g~--~~~~~~-----~e~~d---p~gih~g~~~~ 249 (1066)
T PRK05294 191 IVERGLDLS-----------PVTEVLIEESLLGWKEYEYEVMRDKNDN--CIIVCS-----IENID---PMGVHTGDSIT 249 (1066)
T ss_pred HHHHHHhhC-----------CCCeEEEEEcccCceEEEEEEEEcCCCC--EEEEee-----eeecc---ccceecCCeEE
Confidence 988765321 1247999999997799999999987643 443331 22221 111110 12
Q ss_pred cCCCCCCCH-------HHHHHHHHhCCCC-cccHHHHHHHHHHHHHHhhc---CCcceeeecceee
Q 016159 184 IDVFNGITD-------EDAAKVVDGLAPK-VADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE 238 (394)
Q Consensus 184 v~p~~gl~~-------~~a~~l~~~lg~~-~~~~~~l~~~l~~L~~l~~e---~d~~~lEINPLvv 238 (394)
+.|...+++ +.|.++++.||+. +... .+++.+ .+..++||||.+-
T Consensus 250 ~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~----------vef~~~~~~g~~~viEiNPR~~ 305 (1066)
T PRK05294 250 VAPAQTLTDKEYQMLRDASIAIIREIGVETGGCN----------VQFALNPKDGRYIVIEMNPRVS 305 (1066)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceE----------EEEEEECCCCcEEEEEeecCCC
Confidence 234333454 3445667777776 4210 123333 2467899999864
No 37
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.98 E-value=1.7e-08 Score=91.51 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=81.4
Q ss_pred HHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhccccc
Q 016159 39 MAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILV 117 (394)
Q Consensus 39 L~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~ 117 (394)
|++.|||+|++..+.+.+|+..++.++| +|+|+|+.. .|+.|| |..+. |.+++.++++.+- .
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~a~~~iG---~P~vlK~~~-~GYDGk---------Gq~~i~~~~dl~~a~~~~~-~--- 63 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEEAAESIG---FPAVLKTRR-GGYDGK---------GQFVIRSEEDLEKAWQELG-G--- 63 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHHHHHHHT---SSEEEEESS-SSCTTT---------TEEEESSGGGHHHHHHHTT-T---
T ss_pred CcccCCCCCCeEEECCHHHHHHHHHHcC---CCEEEEccC-cCcCCC---------ccEEECCHHHHHHHHHhcC-C---
Confidence 6789999999999999999999999999 999999753 367777 56666 9999999888871 1
Q ss_pred ccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159 118 TKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (394)
Q Consensus 118 ~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~ 187 (394)
..+++|++++..+|+.+-+.+|... -+..+-. +|.+.+ +.+....+.|.
T Consensus 64 -----------~~~ilE~~v~f~~EiSvivaR~~~G--~~~~yp~-----~en~~~---~~il~~s~~Pa 112 (172)
T PF02222_consen 64 -----------GPCILEEFVPFDREISVIVARDQDG--EIRFYPP-----VENVHR---DGILHESIAPA 112 (172)
T ss_dssp -----------SCEEEEE---ESEEEEEEEEEETTS--EEEEEEE-----EEEEEE---TTEEEEEEESC
T ss_pred -----------CcEEEEeccCCcEEEEEEEEEcCCC--CEEEEcC-----ceEEEE---CCEEEEEECCC
Confidence 3789999999999999999888764 4666652 455443 45566656664
No 38
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.97 E-value=5.6e-09 Score=107.04 Aligned_cols=103 Identities=25% Similarity=0.287 Sum_probs=84.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
..-+++..|++|+++|||+|++..+.+.+++.+++++++ +|+|+||....| |+ ||.++ |.+|+.+
T Consensus 99 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~---~P~VvKP~~~~g--s~---------Gv~~v~~~~el~~ 164 (420)
T PRK00885 99 LEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEKG---APIVVKADGLAA--GK---------GVVVAMTLEEAKA 164 (420)
T ss_pred HHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC---CCEEEEeCCCCC--CC---------cEEEeCCHHHHHH
Confidence 446788999999999999999999999999999999998 999999975443 33 69999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++++++.... .+..-..++||||++ +.|+.+.+..|..
T Consensus 165 ~~~~~~~~~~-------~~~~~~~vlvEe~i~-G~E~sv~~~~~g~ 202 (420)
T PRK00885 165 AVDDMLAGNK-------FGDAGARVVIEEFLD-GEEASFFAFVDGE 202 (420)
T ss_pred HHHHHhhccc-------ccCCCCeEEEEEccC-CcEEEEEEEECCC
Confidence 9999865321 122225799999998 6999999998754
No 39
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.96 E-value=4.8e-08 Score=98.76 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=84.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
+..-+++..|++|+++|||+|++..+.+.+++.++++++| +|+|+||... |..|| |+.++ |.+|+.
T Consensus 96 ~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~g---~P~vlKp~~~-g~~g~---------Gv~~v~~~~el~ 162 (372)
T PRK06019 96 AIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLG---LPAVLKTRRG-GYDGK---------GQWVIRSAEDLE 162 (372)
T ss_pred HHhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcC---CcEEEEeCCC-CcCCC---------CeEEECCHHHHH
Confidence 4556788899999999999999999999999999999998 9999999632 22345 68888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
++++.+. . ..++||||++.+.|+.+.+.+|... -++.+.
T Consensus 163 ~a~~~~~------------~---~~~ivEe~I~~~~E~sv~~~~~~~G--~~~~~p 201 (372)
T PRK06019 163 AAWALLG------------S---VPCILEEFVPFEREVSVIVARGRDG--EVVFYP 201 (372)
T ss_pred HHHHhcC------------C---CCEEEEecCCCCeEEEEEEEECCCC--CEEEeC
Confidence 8887751 1 3689999999889999988887653 344443
No 40
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.95 E-value=2.2e-08 Score=100.42 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=76.4
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeC------CHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVA------SVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~------s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~- 99 (394)
.+..+++.+|++|+++|||+|++..+. +.+++.+..+.++ +|+||||.. +|.++ ||.++
T Consensus 126 ~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l~---~PvvVKP~~--ggsS~---------GV~~v~ 191 (347)
T PRK14572 126 ALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSPRKTLLKLESLG---FPQFLKPVE--GGSSV---------STYKIT 191 (347)
T ss_pred HHHhCHHHHHHHHHHcCCCCCCEEEEEccccccChHHHHHHHHhcC---CCEEEecCC--CCCCC---------CEEEEC
Confidence 455789999999999999999998874 3445555566787 999999954 44444 69889
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (394)
Q Consensus 100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D 150 (394)
|.+|+.++++.++.. + ..++||||++ ++|+.+++..+
T Consensus 192 ~~~el~~a~~~~~~~----------~---~~vlVEefI~-G~E~sv~vi~~ 228 (347)
T PRK14572 192 NAEQLMTLLALIFES----------D---SKVMSQSFLS-GTEVSCGVLER 228 (347)
T ss_pred CHHHHHHHHHHHHhc----------C---CCEEEEcCcc-cEEEEEEEEeC
Confidence 999999998887532 1 3689999998 79999999865
No 41
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.94 E-value=7.8e-09 Score=104.86 Aligned_cols=100 Identities=21% Similarity=0.228 Sum_probs=84.4
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
++.-++..+|++|+++|||+|++..+++.+++.++++++| +|+|+||....+ || ||.++ |.+|+.
T Consensus 63 ~l~~dK~~~k~~l~~~gIptp~~~~~~~~~ea~~~~~~~g---~PvVvKp~~~~~--gk---------GV~iv~~~~el~ 128 (379)
T PRK13790 63 QIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCE---LPVVVKKDGLAA--GK---------GVIIADTIEAAR 128 (379)
T ss_pred HHhCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHH
Confidence 4567899999999999999999999999999999999998 999999976443 45 69999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++++++++.. .. ..++|||+++ +.|+.+.+..|..
T Consensus 129 ~a~~~~~~~~--------~~---~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 129 SAIEIMYGDE--------EE---GTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred HHHHHHHhcC--------CC---CeEEEEEccc-CceEEEEEEeeCC
Confidence 9999876432 11 3799999998 6899999988854
No 42
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=98.94 E-value=1.8e-08 Score=100.41 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=77.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHH----HHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~ee----a~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e 102 (394)
...+++.+|++|+++|||+|++..+.+.++ ...+.+.++ +|+||||.. +|.+. ||.++ +.+
T Consensus 120 l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~~~---~P~vVKP~~--~gsS~---------Gv~~v~~~~ 185 (333)
T PRK01966 120 LSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKLG---LPVFVKPAN--LGSSV---------GISKVKNEE 185 (333)
T ss_pred HHhCHHHHHHHHHHcCCCCCCEEEEeccccchhhHHHHHHhcC---CCEEEEeCC--CCCcc---------CEEEECCHH
Confidence 457899999999999999999999876654 245566787 999999954 44344 79899 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (394)
Q Consensus 103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D 150 (394)
++.+++++.+.. + ..++||++++ |+|+.+++..|
T Consensus 186 el~~a~~~~~~~----------~---~~vlvEefI~-G~E~~v~vl~~ 219 (333)
T PRK01966 186 ELAAALDLAFEY----------D---RKVLVEQGIK-GREIECAVLGN 219 (333)
T ss_pred HHHHHHHHHHhc----------C---CcEEEEcCcC-CEEEEEEEECC
Confidence 999999887532 1 4799999998 79999999986
No 43
>PLN02735 carbamoyl-phosphate synthase
Probab=98.93 E-value=8.4e-09 Score=117.06 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=86.0
Q ss_pred hccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 26 ~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
-.+.-+....|++|.++|||+|++..+++.+|+.++++++| ||++|||.. ++-|+ |+.++ |.+|+
T Consensus 697 i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~eea~~~a~~iG---yPvvVKP~~--g~gG~---------G~~iV~~~eeL 762 (1102)
T PLN02735 697 IDAAEDRERFNAILNELKIEQPKGGIARSEADALAIAKRIG---YPVVVRPSY--VLGGR---------AMEIVYSDDKL 762 (1102)
T ss_pred HHHhcCHHHHHHHHHHcCCCCCCeeEeCCHHHHHHHHHhcC---CCeEEEeCC--CCCCC---------cEEEECCHHHH
Confidence 34557888999999999999999999999999999999998 999999965 33344 68899 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
.+++++..... .+ ..++||++++.++|+.+.+..|...
T Consensus 763 ~~al~~a~~~~--------~~---~~vlVEefI~~g~Ei~V~vl~D~~G 800 (1102)
T PLN02735 763 KTYLETAVEVD--------PE---RPVLVDKYLSDATEIDVDALADSEG 800 (1102)
T ss_pred HHHHHHHHHhc--------CC---CCEEEEEecCCcEEEEEEEEECCCC
Confidence 99988875421 11 3699999998789999999998653
No 44
>PRK05586 biotin carboxylase; Validated
Probab=98.93 E-value=5.9e-08 Score=100.40 Aligned_cols=172 Identities=19% Similarity=0.246 Sum_probs=113.0
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~--~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
...-+++..|++|+++|||+|++ ..+.+.+|+.++++++| ||+||||.. |+.|+ ||.++ |++|
T Consensus 111 ~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~ig---yPvvvKP~~--gggg~---------Gv~~v~~~~e 176 (447)
T PRK05586 111 ELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIG---YPVMVKASA--GGGGR---------GIRIVRSEEE 176 (447)
T ss_pred HhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcC---CCEEEEECC--CCCCC---------eeEEECCHHH
Confidence 34467899999999999999998 46789999999999998 999999954 43344 68899 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~ 183 (394)
+.+++++....... ..+. ..++|||+++..+|+.+.+..|... .++.++ .-... ...++ .++...
T Consensus 177 l~~a~~~~~~~~~~-----~~~~--~~vivEe~i~g~~ei~v~v~~d~~G--~~~~~~-~~~~~---~~~~~-~~~~~~- 241 (447)
T PRK05586 177 LIKAFNTAKSEAKA-----AFGD--DSMYIEKFIENPKHIEFQILGDNYG--NVVHLG-ERDCS---LQRRN-QKVLEE- 241 (447)
T ss_pred HHHHHHHHHHHHHH-----hcCC--CeEEEEecCCCCeEEEEEEEECCCC--CEEEEe-ceecc---eEecc-cceEEE-
Confidence 99988876543210 0121 3699999999778998999988653 455543 21111 12112 223333
Q ss_pred cCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceee
Q 016159 184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAE 238 (394)
Q Consensus 184 v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv 238 (394)
.|...++++ .+.++++.||+.+.-. .+++.+ .+..++||||..-
T Consensus 242 -~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~----------vEf~~~~~g~~~~iEvNpR~~ 294 (447)
T PRK05586 242 -APSPVMTEELRKKMGEIAVKAAKAVNYKNAGT----------IEFLLDKDGNFYFMEMNTRIQ 294 (447)
T ss_pred -cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeE----------EEEEEcCCCCEEEEEEECCCC
Confidence 232225553 3456667777654210 122332 3467999999974
No 45
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.91 E-value=7e-08 Score=102.91 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=82.6
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
.+.-+++..|++|+++|||+|++..+.+.+++.++++++| ||+|+||... |..|+ |+.++ |.+|+.
T Consensus 117 ~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig---~P~VvKP~~g-gs~g~---------Gv~~v~~~~eL~ 183 (577)
T PLN02948 117 RIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFG---YPLMLKSRRL-AYDGR---------GNAVAKTEEDLS 183 (577)
T ss_pred HHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcC---CcEEEEeCCC-CCCCC---------CeEEECCHHHHH
Confidence 4456899999999999999999999999999999999998 9999999642 11345 58788 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++++.+... . ..++||+|++..+|+.+.+.+|..
T Consensus 184 ~a~~~~~~~----------~---~~vlvEefI~~~~EisV~v~r~~~ 217 (577)
T PLN02948 184 SAVAALGGF----------E---RGLYAEKWAPFVKELAVMVARSRD 217 (577)
T ss_pred HHHHHhhCC----------C---CcEEEEecCCCCeEEEEEEEECCC
Confidence 988886421 1 368999999988999999998754
No 46
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.91 E-value=4.3e-08 Score=102.42 Aligned_cols=173 Identities=20% Similarity=0.273 Sum_probs=111.7
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceee---CCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAV---ASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~---~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e 102 (394)
+..-+++..|++|.++|||+|++... .+.+++.++++++| ||+|+||.. |+-|+ ||+++ |++
T Consensus 110 ~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~ig---yPvvvKP~~--ggGg~---------Gv~iv~~~~ 175 (478)
T PRK08463 110 RKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIG---YPVILKASG--GGGGR---------GIRVVHKEE 175 (478)
T ss_pred HhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhC---CCEEEEeCC--CCCCC---------ceEEeCCHH
Confidence 34467889999999999999886543 57899999999998 999999964 33345 69999 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEE
Q 016159 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKV 182 (394)
Q Consensus 103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~ 182 (394)
|+.++++....... .. .+. ..++||+|++.++|+.+.+..|... .++.++ .-...+ .++++. +..+
T Consensus 176 eL~~a~~~~~~~a~--~~---~~~--~~vlvEefI~~~~~iev~v~~d~~g--~v~~~~-er~~s~---~~~~~~-~ie~ 241 (478)
T PRK08463 176 DLENAFESCKREAL--AY---FNN--DEVFMEKYVVNPRHIEFQILGDNYG--NIIHLC-ERDCSI---QRRHQK-VIEI 241 (478)
T ss_pred HHHHHHHHHHHHHH--Hh---cCC--CcEEEEecCCCCeEEEEEEEEcCCC--CEEEEe-ccCCcc---ccccCc-eEEE
Confidence 99998876532111 00 111 4799999998788888888888643 455444 222222 233332 3222
Q ss_pred ecCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhh--cCCcceeeecceeec
Q 016159 183 PIDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFC--ESDCTLLEINPLAET 239 (394)
Q Consensus 183 ~v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~--e~d~~~lEINPLvv~ 239 (394)
.|...+++. .+.++++.+|+.+.- . .+++. +.+..++||||.+..
T Consensus 242 --~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~--~--------vEf~~~~~~~~y~iEiN~R~~~ 295 (478)
T PRK08463 242 --APCPSISDNLRKTMGVTAVAAAKAVGYTNAG--T--------IEFLLDDYNRFYFMEMNTRIQV 295 (478)
T ss_pred --CCCCCCCHHHHHHHHHHHHHHHHHcCCCCce--e--------EEEEEcCCCCEEEEEEECCcCC
Confidence 333235553 334566677765410 0 12333 235789999999754
No 47
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.90 E-value=7.2e-08 Score=97.23 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=80.2
Q ss_pred cCCCHHHHHHHH-HHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 28 LNIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL-~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
+..+++..|+++ +++|||+|++..+++.+++.++++++| ||+|+||.. |+.|+ ||.++ |.+++.
T Consensus 97 ~~~dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~VvKP~~--g~~s~---------gv~~v~~~~el~ 162 (380)
T TIGR01142 97 LTMNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKIG---YPCVVKPVM--SSSGK---------GQSVVRGPEDIE 162 (380)
T ss_pred HhhCHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcC---CCEEEEECC--CcCCC---------CeEEECCHHHHH
Confidence 445778888875 899999999999999999999999998 999999964 33344 69999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++++.+..... . .-..++||||++.+.|+.+.+.++..
T Consensus 163 ~~~~~~~~~~~--------~-~~~~~ivEe~i~~~~E~sv~~~~~~~ 200 (380)
T TIGR01142 163 KAWEYAQEGAR--------G-GAGRVIVEEFIDFDYEITLLTVRHVD 200 (380)
T ss_pred HHHHHHHhhcc--------C-CCCCEEEEEecCCCEEEEEEEEEcCC
Confidence 99988753211 0 11479999999977898887776543
No 48
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.90 E-value=3.2e-08 Score=113.13 Aligned_cols=112 Identities=18% Similarity=0.115 Sum_probs=86.8
Q ss_pred ccCCCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
+..-+++.+|++|+++|||+|+ +.++++.+|+.++++++| ||+||||... +-|+ ||.++ |.+|+
T Consensus 110 ~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~~a~~ig---yPvVVKP~~g--gGG~---------GV~iv~~~eEL 175 (1201)
T TIGR02712 110 RKFGLKHTARELAEAAGVPLLPGTGLLSSLDEALEAAKEIG---YPVMLKSTAG--GGGI---------GMQKCDSAAEL 175 (1201)
T ss_pred HHhcCHHHHHHHHHHCCCCCCCceeecCCHHHHHHHHHhcC---CeEEEEECCC--CCCC---------CEEEECCHHHH
Confidence 3446889999999999999876 557899999999999998 9999999753 3345 69999 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
.+++++...... . ..+ -.+++||||++.++|+.+.+..|... -++.++
T Consensus 176 ~~a~~~~~~~~~--~---~f~--~~~vlVEefI~g~~eveV~v~~Dg~g--~vv~lg 223 (1201)
T TIGR02712 176 AEAFETVKRLGE--S---FFG--DAGVFLERFVENARHVEVQIFGDGKG--KVVALG 223 (1201)
T ss_pred HHHHHHHHHHHH--H---hcC--CCcEEEEecCCCCEEEEEEEEECCCC--eEEEee
Confidence 998888743221 0 012 14699999998889999999998764 455553
No 49
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.87 E-value=8.5e-08 Score=99.45 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=79.6
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHH--hCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~--lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ 101 (394)
.+..++..+|++++++|||+|++.. +.+.+++..+++. +| +|+||||. .|+.|+ |+.++ +.
T Consensus 138 ai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel~~~~~~~~IG---yPvVVKP~--~GGSS~---------GV~~Vkn~ 203 (493)
T PRK06524 138 HRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDELSALAHGAGLG---DDLVVQTP--YGDSGS---------TTFFVRGQ 203 (493)
T ss_pred HHhCCHHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHhccCC---CcEEEEEC--CCCCCc---------CEEEeCCH
Confidence 3457899999999999999999988 4677777777765 88 99999997 366676 79899 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 102 ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+|+.++++++.+. ..++||++++ +.|+.|.+.+|..
T Consensus 204 eELe~a~~~~~~~--------------~~viVEe~I~-GrEitVev~vd~d 239 (493)
T PRK06524 204 RDWDKYAGGIVGQ--------------PEIKVMKRIR-NVEVCIEACVTRH 239 (493)
T ss_pred HHHHHHHHHhcCC--------------CCEEEEeccC-cEEEEEEEEEeCC
Confidence 9999988776421 4689999997 8999998888864
No 50
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.86 E-value=2.2e-08 Score=98.15 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=78.2
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh-CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l-g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
++..+++.++++|+++|||+|++.++.+++++.++++++ + +|+|+||.. |+.|+ ||.+. +.+++
T Consensus 95 ~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~---~P~VvKP~~--g~~g~---------GV~~v~~~~~~ 160 (300)
T PRK10446 95 ARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGG---APLVVKLVE--GTQGI---------GVVLAETRQAA 160 (300)
T ss_pred HhhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHhCC---CCEEEEECC--CCCcc---------cEEEEcCHHHH
Confidence 455688999999999999999999999999998888887 4 899999964 44454 68888 88887
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeC--CCeeEEEEEEEecc
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS--LVNEMYFAIMLDRK 152 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~--~~~E~ylgi~~Dr~ 152 (394)
..+.+..... + ..++||||++ .+.|+.+.+..++.
T Consensus 161 ~~~~~~~~~~----------~---~~~lvQe~I~~~~g~d~rv~vig~~~ 197 (300)
T PRK10446 161 ESVIDAFRGL----------N---AHILVQEYIKEAQGCDIRCLVVGDEV 197 (300)
T ss_pred HHHHHHHHhc----------C---CCEEEEeeeccCCCceEEEEEECCEE
Confidence 7766654211 1 3699999996 47999999875543
No 51
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.86 E-value=7.5e-08 Score=89.58 Aligned_cols=87 Identities=24% Similarity=0.320 Sum_probs=66.1
Q ss_pred HHHHcCCCCCCceeeCCHHHH----HHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHh
Q 016159 38 LMAKYGINVPKGLAVASVDEV----KKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML 112 (394)
Q Consensus 38 lL~~~GIpvp~~~~~~s~eea----~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l 112 (394)
||+++|||||++.++...+.. .+....++ +|++|||.. +|.+. ||..+ |.+++.++.++.+
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~---~P~~VKP~~--~GsS~---------Gi~~v~~~~el~~ai~~~~ 66 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLG---FPLFVKPAS--EGSSI---------GISKVHNEEELEEAIEKAF 66 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHS---SSEEEEESS--TSTTT---------TEEEESSHHHHHHHHHHHT
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcC---CCEEEEECC--CCccE---------EEEEcCCHHHHHHHHHHHh
Confidence 689999999999999765543 35577888 999999963 55555 69889 9999999998875
Q ss_pred cccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 113 ~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
.. + ..+|||||++ |+|+.+++..+..
T Consensus 67 ~~----------~---~~vlVEefI~-G~E~tv~vl~~~~ 92 (203)
T PF07478_consen 67 KY----------D---DDVLVEEFIS-GREFTVGVLGNGE 92 (203)
T ss_dssp TT----------H---SEEEEEE--S-SEEEEEEEEESSS
T ss_pred hh----------c---ceEEEEeeec-ccceEEEEEecCC
Confidence 32 1 5899999996 9999999998544
No 52
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.84 E-value=1e-07 Score=105.58 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=78.6
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCC------HH-HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVAS------VD-EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s------~e-ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~- 99 (394)
+..+++.+|++|+++|||+|++..++. .+ +..++.+++| +|+||||.. +|.++ ||.++
T Consensus 565 l~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg---~P~iVKP~~--~GsS~---------Gv~~v~ 630 (809)
T PRK14573 565 IAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFS---FPMFVKTAH--LGSSI---------GVFEVH 630 (809)
T ss_pred HHcCHHHHHHHHHHCCCCCCCEEEEechhcccChHHHHHHHHHhcC---CCEEEeeCC--CCCCC---------CEEEEC
Confidence 457899999999999999999988763 22 2345667888 999999964 44444 79999
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+.+|+.+++++.+.. . ..++|||++..++|+.+++..|..
T Consensus 631 ~~~el~~a~~~a~~~----------~---~~vlVEe~i~~grEi~v~vl~~~~ 670 (809)
T PRK14573 631 NVEELRDKISEAFLY----------D---TDVFVEESRLGSREIEVSCLGDGS 670 (809)
T ss_pred CHHHHHHHHHHHHhc----------C---CcEEEEeccCCCEEEEEEEEeCCC
Confidence 999999999887532 1 469999999878999999998854
No 53
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.83 E-value=9.3e-08 Score=108.56 Aligned_cols=172 Identities=17% Similarity=0.235 Sum_probs=112.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
++.-+++.+|++++++|||+|++. .+.+.+|+.++++++| ||++|||.. ||-|+ |++++ +++|
T Consensus 111 ~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iG---yPvIVKP~~--GGGGr---------G~riV~~~eE 176 (1143)
T TIGR01235 111 DQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIG---YPVIIKASW--GGGGR---------GMRVVRSEAD 176 (1143)
T ss_pred HHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcC---CCEEEEECC--CCCCC---------ccEEeCCHHH
Confidence 344688999999999999999975 5689999999999998 999999954 44344 68899 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~ 183 (394)
+.+++++....... ..|. ..++||++++..+|+.+.+..|... .++.+. .-... +.+++ .++...
T Consensus 177 L~~a~~~a~~ea~~-----~fg~--~~vlIEefI~g~reIeVqVlgD~~G--~vv~l~-eRdcs---vqrr~-qk~ie~- 241 (1143)
T TIGR01235 177 VADAFQRAKSEAKA-----AFGN--DEVYVEKLIERPRHIEVQLLGDKHG--NVVHLF-ERDCS---VQRRH-QKVVEV- 241 (1143)
T ss_pred HHHHHHHHHHHHHH-----hcCC--CcEEEEEcCCCCeEEEEEEEEeCCC--CEEEEE-ecccc---ccccC-ceEEEE-
Confidence 99998876533210 1121 4799999998889999999999753 344332 11122 23333 233222
Q ss_pred cCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceee
Q 016159 184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAE 238 (394)
Q Consensus 184 v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv 238 (394)
.|...+++. .|.++++.+|+.+.-- .+++.+ ....++||||...
T Consensus 242 -aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gt----------VEFlvd~dg~~yfIEVNPRiq 294 (1143)
T TIGR01235 242 -APAPYLSREVRDEIAEYAVKLAKAVNYINAGT----------VEFLVDNDGKFYFIEVNPRIQ 294 (1143)
T ss_pred -eCCCCCCHHHHHHHHHHHHHHHHHcCCcceEE----------EEEEEeCCCcEEEEEeecCCC
Confidence 333234543 3344555666543100 012222 2477999999885
No 54
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.80 E-value=2.7e-07 Score=90.55 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=75.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeC-CHHHHH-----HHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVA-SVDEVK-----KAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~-s~eea~-----~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~- 99 (394)
.+..+++..|++|+++|||+|++.+++ +.++.. .+...++ +|+|+||.. ++.|+ ||.++
T Consensus 101 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~---~P~vvKP~~--~~~s~---------Gv~~v~ 166 (315)
T TIGR01205 101 ALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPLG---FPVIVKPAR--EGSSV---------GVSKVK 166 (315)
T ss_pred HHHHCHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHHHHhcC---CCEEEEeCC--CCCcc---------CEEEEC
Confidence 344689999999999999999999887 544322 3345677 999999964 33344 68888
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
|.+++.++++..+.. + ..++|||+++ ++|+.+++..+..
T Consensus 167 ~~~el~~~~~~~~~~----------~---~~~lvEe~i~-G~e~~v~vi~~~~ 205 (315)
T TIGR01205 167 SEEELQAALDEAFEY----------D---EEVLVEQFIK-GRELEVSILGNEE 205 (315)
T ss_pred CHHHHHHHHHHHHhc----------C---CcEEEEcCCC-CEEEEEEEECCCC
Confidence 999999988876532 1 3699999998 8999999988543
No 55
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.80 E-value=1.6e-07 Score=97.05 Aligned_cols=196 Identities=16% Similarity=0.257 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 31 HEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
.+..||.++.+.|+|+.|++. +.+.+++...|+++| |||.+|+. +||-|| |.+++ +++|+.++
T Consensus 115 dK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiG---yPVlIKAs--aGGGGK---------GMRvv~~~~e~~e~ 180 (645)
T COG4770 115 DKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIG---YPVLIKAS--AGGGGK---------GMRVVETPEEFAEA 180 (645)
T ss_pred cHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcC---CcEEEEec--cCCCCC---------ceEeecCHHHHHHH
Confidence 567899999999999988865 678999999999999 99999995 577687 79999 99999988
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~ 187 (394)
++.-.... +...|. ..++||+|+...+.+-+.+.-|... -++..+ +=.+++ +++| +|+.....+|
T Consensus 181 l~sarrEA-----~asFGd--drv~iEkyl~~PRHIEiQV~aD~HG--Nvv~Lg-ERdCSl---QRRh-QKVIEEAPaP- 245 (645)
T COG4770 181 LESARREA-----KASFGD--DRVFIEKYLDKPRHIEIQVFADQHG--NVVHLG-ERDCSL---QRRH-QKVIEEAPAP- 245 (645)
T ss_pred HHHHHHHH-----HhhcCC--ceEehhhhcCCCceEEEEEEecCCC--CEEEee-ccccch---hhhc-chhhhcCCCC-
Confidence 87764332 123453 5899999998889999999999865 466666 555665 6666 6776665555
Q ss_pred CCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC---CcEEEee-----ceee
Q 016159 188 NGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG---KQLVAAD-----AKLN 252 (394)
Q Consensus 188 ~gl~~~~-------a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~---G~~~alD-----aki~ 252 (394)
++++++ |.++++..|+.+. -+++.|.. .+..+..+|.|-.+.-++ ..++-+| -|+.
T Consensus 246 -~l~~~~R~amg~aAv~~a~avgY~gA------GTVEFivd--~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA 316 (645)
T COG4770 246 -FLTEETREAMGEAAVAAAKAVGYVGA------GTVEFIVD--ADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVA 316 (645)
T ss_pred -CCCHHHHHHHHHHHHHHHHhcCCCcC------ceEEEEEc--CCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHh
Confidence 477753 3444555565431 01110000 123477899998776543 1255566 3344
Q ss_pred cCcchhccchhh
Q 016159 253 FDDNAAFRQKEI 264 (394)
Q Consensus 253 ldd~a~fR~~~~ 264 (394)
-.+.-.|.|.++
T Consensus 317 ~GekL~~~Q~di 328 (645)
T COG4770 317 SGEKLPFTQDDI 328 (645)
T ss_pred cCCcCCcccccc
Confidence 444456666665
No 56
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.78 E-value=1.5e-07 Score=106.91 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
-+.+..+++|+++|||+|++..+++.+|+.++++++| ||+||||....|| + ||.++ |++|+.+++
T Consensus 668 ~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~ig---yPvIVKP~~~~Gg--~---------gv~iv~~~eeL~~~l 733 (1050)
T TIGR01369 668 EDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIG---YPVLVRPSYVLGG--R---------AMEIVYNEEELRRYL 733 (1050)
T ss_pred CCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhcC---CCEEEEECCCCCC--C---------CeEEECCHHHHHHHH
Confidence 4567789999999999999999999999999999998 9999999654343 3 68889 999999999
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
++..... .+ ..++||||++.+.|+.+.+..|.
T Consensus 734 ~~a~~~s--------~~---~~vlVeefI~~G~E~~Vd~l~d~ 765 (1050)
T TIGR01369 734 EEAVEVS--------PE---HPVLIDKYLEDAVEVDVDAVSDG 765 (1050)
T ss_pred HHHHHhC--------CC---CCEEEeecCCCCeEEEEEEEEeC
Confidence 9875432 11 46999999988999999999885
No 57
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.78 E-value=1.5e-07 Score=107.15 Aligned_cols=173 Identities=20% Similarity=0.304 Sum_probs=114.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
++.-+++.+|+++.++|||+|++. .+.+.+|+.++++++| ||+|+||.. |+-|+ ||+++ |++|
T Consensus 115 ~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iG---yPvVVKP~~--GgGGr---------Gv~vV~~~eE 180 (1146)
T PRK12999 115 RLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIG---YPIMLKASA--GGGGR---------GMRIVRSEEE 180 (1146)
T ss_pred HHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhC---CCEEEEECC--CCCCC---------CeEEeCCHHH
Confidence 344678999999999999998876 4899999999999998 999999964 33344 69999 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~ 183 (394)
+.+++++...... . ..|. ..++||+|++..+|+.+.+..|... -++.+. .....+ .+++ .++..
T Consensus 181 L~~a~~~a~~ea~---~--~fg~--~~vlVEefI~g~~~ieVqvl~D~~G--~vv~l~-erdcsv---qrr~-qk~ie-- 244 (1146)
T PRK12999 181 LEEAFERAKREAK---A--AFGN--DEVYLEKYVENPRHIEVQILGDKHG--NVVHLY-ERDCSV---QRRH-QKVVE-- 244 (1146)
T ss_pred HHHHHHHHHHHHH---h--hcCC--CcEEEecCCCCCeEEEEEEEEECCC--CEEEEE-ccccce---eecC-ccEEE--
Confidence 9999887653321 0 0121 4799999998778888999988654 344443 222222 3333 23322
Q ss_pred cCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceeec
Q 016159 184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAET 239 (394)
Q Consensus 184 v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv~ 239 (394)
..|...+++. .+.++++.+|+.+.-- .+++.+ .+..++||||.+..
T Consensus 245 ~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gt----------VEflvd~dg~~yfIEINpRlqv 299 (1146)
T PRK12999 245 IAPAPGLSEELRERICEAAVKLARAVGYVNAGT----------VEFLVDADGNFYFIEVNPRIQV 299 (1146)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEECCCCEEEEEEECCCCC
Confidence 2443345543 3455566666653100 112222 25789999998753
No 58
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.76 E-value=9.9e-08 Score=85.45 Aligned_cols=96 Identities=28% Similarity=0.274 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHH
Q 016159 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~ 109 (394)
+++..+++++++|||+|++..+.+.+++.+.+..++ +|+||||....+ |+ ||.+. |++++.++++
T Consensus 4 dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~~---~p~vvKp~~g~g--s~---------gv~~~~~~~~l~~~~~ 69 (184)
T PF13535_consen 4 DKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDLG---FPFVVKPVDGSG--SR---------GVFIVHSPEELEAALA 69 (184)
T ss_dssp CHHHHHHHHHHHTS----EEEECSHHHHHHHHHHSS---SSEEEEESS-ST--TT---------T-EEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcC---CCEEEEcCcccc--CC---------CEEEeCCHHHHHHHHH
Confidence 577889999999999999999999999999999998 999999976443 23 68888 9999999988
Q ss_pred HHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159 110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (394)
Q Consensus 110 ~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D 150 (394)
++....- .....++|||+++ +.|+.+-+..+
T Consensus 70 ~~~~~~~---------~~~~~~ivqe~i~-g~e~~~~~~~~ 100 (184)
T PF13535_consen 70 EIREDSP---------LGNGPVIVQEYIP-GDEYSVDGVVD 100 (184)
T ss_dssp HHHHHHS----------HSSSEEEEE----SEEEEEEEEEE
T ss_pred HHHHhcc---------cCCccEEEEEeee-eeeEEEEEEEE
Confidence 8854420 1125899999999 79999988887
No 59
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.76 E-value=7.5e-08 Score=109.43 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
-+.+.-+++|.++|||+|++..+++.+|+.++++++| ||+|+||....| |+ |+.++ |.+|+++++
T Consensus 669 ~DK~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~~ig---yPvVVKP~~~~G--g~---------gv~iv~~~eeL~~~l 734 (1068)
T PRK12815 669 EDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIG---YPVLIRPSYVIG--GQ---------GMAVVYDEPALEAYL 734 (1068)
T ss_pred cCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHHHHH
Confidence 4667789999999999999999999999999999998 999999965433 33 68899 999999988
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++... .. ..++||||++ +.|+.+.+..|..
T Consensus 735 ~~~~s----------~~---~~vlIeefI~-G~E~~Vd~i~dg~ 764 (1068)
T PRK12815 735 AENAS----------QL---YPILIDQFID-GKEYEVDAISDGE 764 (1068)
T ss_pred HHhhc----------CC---CCEEEEEeec-CceEEEEEEEcCC
Confidence 87611 11 4799999996 7899999998864
No 60
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.76 E-value=1.9e-07 Score=96.42 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=73.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-C----
Q 016159 27 RLNIHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K---- 100 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s---- 100 (394)
++.-+++.+|++|.++|||+|+ +..+.+.+|+..++.+++ +|+||||...+|| | ||.++ +
T Consensus 101 ~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~~---~PvVVKP~~~sgg--k---------GV~v~~~~~~~ 166 (435)
T PRK06395 101 MIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSM---KDVAVKPIGLTGG--K---------GVKVTGEQLNS 166 (435)
T ss_pred HHhhCHHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhhC---CCEEEEeCCCCCC--C---------CeEEecCchhh
Confidence 3556788899999999999974 457777888888888887 9999999877764 4 58776 3
Q ss_pred HHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 101 ~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
.+++.+++.++... + ..++||||+. |.|+.+-+..|...
T Consensus 167 ~~ea~~~~~~~~~~----------~---~~viIEEfl~-G~E~Svd~~~dg~~ 205 (435)
T PRK06395 167 VDEAIRYAIEILDR----------D---GVVLIEKKMT-GEEFSLQAFSDGKH 205 (435)
T ss_pred HHHHHHHHHHHhCC----------C---CcEEEEeecC-CceEEEEEEEcCCe
Confidence 23444444443211 1 4699999998 78999999988654
No 61
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.75 E-value=8.1e-08 Score=97.34 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=82.5
Q ss_pred ccCCCHHHHHHHHH-HcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 27 RLNIHEYQGAELMA-KYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 27 ~m~L~E~~aK~lL~-~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
++.-+++..|++|. ++|||+|++..+++.+++.++++++| ||+|+||.... .|+ ||.++ |.+|+
T Consensus 109 ~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g---~P~VvKP~~g~--~s~---------Gv~~v~~~~el 174 (395)
T PRK09288 109 RLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIG---YPCVVKPVMSS--SGK---------GQSVVRSPEDI 174 (395)
T ss_pred HHHhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcC---CCEEEEeCCCc--CCC---------CeEEECCHHHH
Confidence 34456778889884 79999999999999999999999998 99999997432 244 68899 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
.++++.+..... + .-..++||||++.+.|+.+.+..|..
T Consensus 175 ~~~~~~~~~~~~--------~-~~~~~lvEefi~~~~E~sv~~~~~~~ 213 (395)
T PRK09288 175 EKAWEYAQEGGR--------G-GAGRVIVEEFIDFDYEITLLTVRAVD 213 (395)
T ss_pred HHHHHHHHhhcc--------c-cCCCEEEEEecCCCEEEEEEEEEcCC
Confidence 999998754321 0 01479999999988999998888765
No 62
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.75 E-value=8.4e-08 Score=109.11 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
.-+.+..+++|+++|||+|++..+.+.+|+.++++++| ||+||||....| |+ ||.++ |.+|+.++
T Consensus 667 ~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~ig---yPvvVKP~~~~G--g~---------Gv~iv~~~eeL~~~ 732 (1066)
T PRK05294 667 AEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIG---YPVLVRPSYVLG--GR---------AMEIVYDEEELERY 732 (1066)
T ss_pred hCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhcC---CCeEEEeCCCCC--CC---------cEEEECCHHHHHHH
Confidence 34677789999999999999999999999999999998 999999965433 33 68899 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++..... .+ ..++||||+++..|+.+.+..|..
T Consensus 733 ~~~a~~~s--------~~---~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 733 MREAVKVS--------PD---HPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred HHHHHhhC--------CC---CcEEEEecCCCCEEEEEEEEecCC
Confidence 88875432 11 469999999865699999988754
No 63
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.75 E-value=4.7e-07 Score=93.45 Aligned_cols=106 Identities=13% Similarity=0.182 Sum_probs=82.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~--~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
+..-+++..|++|+++|||+|++ ..+.+.+|+.++++++| ||+||||....| |+ ||.++ |.+|
T Consensus 111 ~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~---~P~VvKP~~g~g--s~---------Gv~iv~~~~e 176 (450)
T PRK06111 111 AKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIG---YPVMLKASAGGG--GI---------GMQLVETEQE 176 (450)
T ss_pred HHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhC---CCEEEEeCCCCC--Cc---------eEEEECCHHH
Confidence 45568999999999999999986 55689999999999998 999999975433 44 69999 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
+.++++....... . ..+ -..++|||++++.+|+.+.+..|...
T Consensus 177 l~~a~~~~~~~~~---~--~~~--~~~~lvEe~i~g~~e~~v~v~~~~~g 219 (450)
T PRK06111 177 LTKAFESNKKRAA---N--FFG--NGEMYIEKYIEDPRHIEIQLLADTHG 219 (450)
T ss_pred HHHHHHHHHHHHH---H--hcC--CCcEEEEcccCCCcEEEEEEEEcCCC
Confidence 9999887643210 0 011 13699999999778888989888653
No 64
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.74 E-value=6.2e-08 Score=105.94 Aligned_cols=95 Identities=22% Similarity=0.301 Sum_probs=79.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE-C-CHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l-~-s~ee~~ 105 (394)
..-++..+|++|+++|||+|++..+.+++++.++++++| ||+|+||.. |+.|+ ||.+ . |++++.
T Consensus 211 i~~DK~~tk~lL~~~GIPvP~~~~v~s~~~a~~~a~~iG---~PvVVKP~~--G~~G~---------GV~~~v~~~~el~ 276 (727)
T PRK14016 211 IACDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIG---YPVVVKPLD--GNHGR---------GVTVNITTREEIE 276 (727)
T ss_pred HhCCHHHHHHHHHHCCcCCCCeeEeCCHHHHHHHHHHcC---CCEEEEECC--CCCCC---------ceEEecCCHHHHH
Confidence 346788999999999999999999999999999999998 999999964 44454 7988 6 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D 150 (394)
++++.+... + ..++||||++ +.|+.+.+..+
T Consensus 277 ~a~~~a~~~----------~---~~viVEe~I~-G~d~Rv~Vvgg 307 (727)
T PRK14016 277 AAYAVASKE----------S---SDVIVERYIP-GKDHRLLVVGG 307 (727)
T ss_pred HHHHHHHHh----------C---CeEEEEEecC-CceEEEEEECC
Confidence 998876432 1 4799999998 78988876543
No 65
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.71 E-value=7.8e-08 Score=107.06 Aligned_cols=95 Identities=22% Similarity=0.324 Sum_probs=79.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE-C-CHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l-~-s~ee~~ 105 (394)
..-+++.+|++|+++|||+|++..+.+++++.++++++| +|+|+||.. |+.|+ ||.+ . |++++.
T Consensus 210 ia~DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~ig---~PvVVKP~~--g~~G~---------GV~l~v~s~~el~ 275 (864)
T TIGR02068 210 IACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLG---YPVVIKPYD--GNHGR---------GVTINILTRDEIE 275 (864)
T ss_pred HHcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcC---CCEEEEECC--CCCcc---------CEEEEeCCHHHHH
Confidence 346788999999999999999999999999999999998 999999975 33344 6888 5 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D 150 (394)
++++.+... + ..++||+|++ +.|+.+.+..+
T Consensus 276 ~a~~~a~~~----------~---~~vlVEefI~-G~e~rvlVv~~ 306 (864)
T TIGR02068 276 SAYEAAVEE----------S---SGVIVERFIT-GRDHRLLVVGG 306 (864)
T ss_pred HHHHHHHhh----------C---CcEEEEEecc-CCEEEEEEECC
Confidence 998887432 1 4799999998 79998877543
No 66
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.69 E-value=6.3e-07 Score=89.17 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
-+.+.=|++|++.|||||++.++.+.+|+..+++++| +|.|+|..- .|+.|| |..+. +++++.+.+
T Consensus 98 qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g---~p~VlKtr~-gGYDGk---------GQ~~i~~~~~~~~~~ 164 (375)
T COG0026 98 QDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLG---FPAVLKTRR-GGYDGK---------GQWRIRSDADLELRA 164 (375)
T ss_pred hhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC---CceEEEecc-ccccCC---------CeEEeeCcccchhhH
Confidence 3455569999999999999999999999999999998 999999964 377888 45555 777766654
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~ 187 (394)
...... ...++|+|++..+|+.+=+.+++. |-+..+=. +|.+.+ +-|.+..+.|.
T Consensus 165 ~~~~~~--------------~~~vlE~fV~F~~EiSvi~aR~~~--G~~~~yP~-----~eN~h~---~gIl~~siaPa 219 (375)
T COG0026 165 AGLAEG--------------GVPVLEEFVPFEREISVIVARSND--GEVAFYPV-----AENVHR---NGILRTSIAPA 219 (375)
T ss_pred hhhhcc--------------CceeEEeecccceEEEEEEEEcCC--CCEEEecc-----cceeee---cCEEEEEEecC
Confidence 443211 122899999999997776666654 35666642 566654 55777777774
No 67
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=98.67 E-value=1.1e-07 Score=98.39 Aligned_cols=116 Identities=27% Similarity=0.289 Sum_probs=95.3
Q ss_pred hhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (394)
Q Consensus 24 ~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e 102 (394)
|.-++.-++..+|++|.+||||+.++..++++++|....+..+ ..++|+|++.++.| | ||.+. |.+
T Consensus 101 ~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~--~~~~ViKAdGLAAG--K---------GViv~~~~~ 167 (788)
T KOG0237|consen 101 QAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSAT--DKALVIKADGLAAG--K---------GVIVAKSKE 167 (788)
T ss_pred HHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhCC--CcceEEeecccccC--C---------ceEeeccHH
Confidence 4446778889999999999999999999999999999999874 35799999998864 5 69999 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeee
Q 016159 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (394)
Q Consensus 103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~ 160 (394)
|+-+++++|+.... .|..-..|.|||+++ +.|+.+-...|...-.|+...
T Consensus 168 EA~eAv~sIl~~~~-------fg~AG~tvViEE~LE-GeEvS~laftDG~s~~~mp~a 217 (788)
T KOG0237|consen 168 EAFEAVDSILVKKV-------FGSAGKTVVIEELLE-GEEVSFLAFTDGYSVRPLPPA 217 (788)
T ss_pred HHHHHHHHHHhhhh-------hccccceEehhhhcC-cceEEEEEEecCcccccCCcc
Confidence 99999999987653 343347899999999 889888888886655565543
No 68
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.66 E-value=7.7e-07 Score=87.17 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=71.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
...+++.+|++|+ .|||+|++..+.+.+ .++.++ +|+|+||.. ++-++ ||.++ |.+++.+
T Consensus 92 i~~DK~~~k~~l~-~~ip~p~~~~~~~~~----~~~~l~---~P~vvKP~~--g~~s~---------Gv~~v~~~~el~~ 152 (299)
T PRK14571 92 ICFDKLLTYRFLK-GTVEIPDFVEIKEFM----KTSPLG---YPCVVKPRR--EGSSI---------GVFICESDEEFQH 152 (299)
T ss_pred HHcCHHHHHHHHh-cCCCCCCEEEEechh----hhhhcC---CCEEEecCC--CCCcC---------CEEEECCHHHHHH
Confidence 4467888999998 589999999886532 235677 999999964 33344 68899 9999998
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
++++.+... ..++||||++ ++|+.+++..+.
T Consensus 153 ~~~~~~~~~-------------~~vlVEeyI~-G~E~sv~vl~~~ 183 (299)
T PRK14571 153 ALKEDLPRY-------------GSVIVQEYIP-GREMTVSILETE 183 (299)
T ss_pred HHHHHHhhC-------------CcEEEEcccc-ceEEEEEEEcCC
Confidence 887765321 3699999998 899999999874
No 69
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.65 E-value=2.2e-07 Score=97.20 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=77.9
Q ss_pred ccCCCHHHHHHHHHHcCCCCC-CceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH-
Q 016159 27 RLNIHEYQGAELMAKYGINVP-KGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE- 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp-~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee- 103 (394)
+..-++..+|++|+++|||+| ++..+++.+|+.++++.+ +|+||||...+++ | ||.++ |+++
T Consensus 105 ~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~~----~PvVVKP~~~agg--k---------GV~iv~~~~e~ 169 (486)
T PRK05784 105 RIEKSKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEYG----GSVAIKPARQAGG--K---------GVKVIADLQAY 169 (486)
T ss_pred HHhcCHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhhc----CCEEEeeCCCCCC--C---------CEEEECChhHh
Confidence 455788899999999999997 788889999999888665 6999999876653 4 69999 8762
Q ss_pred ----HH----HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 104 ----VE----DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 104 ----~~----~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+. +++++++.... ..|..-..|+||||+. |.|+.+.+..|..
T Consensus 170 ~~~~~~ea~~~a~~~~~~~~~------~~g~~~~~VlIEEfL~-G~E~SV~al~dG~ 219 (486)
T PRK05784 170 LSQEKREALTKSVNDIKEGSA------YYKDVEPKILVEEKVD-GVEYTLQVLTDGE 219 (486)
T ss_pred cchhHHHHHHHHHHHHHHhHh------hccCCCCeEEEEEccC-CeEEEEEEEECCC
Confidence 22 44455543210 1232235899999999 7899999998754
No 70
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=98.65 E-value=1.8e-07 Score=101.49 Aligned_cols=95 Identities=24% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC----CHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEVE 105 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~----s~ee~~ 105 (394)
-++..+|++|+++|||||++.++++.+++.++...++ .+|+||||.. ++.|+ ||.+. +.+++.
T Consensus 474 ~DK~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~~--g~PVVVKP~~--g~~G~---------GVsi~~~~~~~eel~ 540 (737)
T TIGR01435 474 ENKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFE--NKAIVVKPKS--TNYGL---------GITIFKNGFTLEDFQ 540 (737)
T ss_pred cCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhc--CCCEEEeeCC--CCCcC---------CeEEecCcCCHHHHH
Confidence 4788999999999999999999999988888877772 2899999965 44555 67775 478888
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
++++..+.. + +.|+|||+++ |.|+.+.|..+.
T Consensus 541 ~Al~~A~~~----------~---~~VLVEefI~-G~EyRv~VIg~k 572 (737)
T TIGR01435 541 EALNIAFSE----------D---SSVIIEEFLP-GTEYRFFVLNDK 572 (737)
T ss_pred HHHHHHHhc----------C---CeEEEEeccc-CCEEEEEEECCe
Confidence 887765421 1 4799999998 899999888653
No 71
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.64 E-value=8.6e-07 Score=92.88 Aligned_cols=276 Identities=19% Similarity=0.306 Sum_probs=171.0
Q ss_pred CHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 31 HEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
.+-.|+.+--++|+|+.++.- +++.+||.+.+++.| +|+++|+.. ||-|. |.+++ +.|+++++
T Consensus 147 DKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG---~PvI~KAAy--GGGGR---------GmRvVr~~e~vee~ 212 (1176)
T KOG0369|consen 147 DKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYG---LPVIIKAAY--GGGGR---------GMRVVRSGEDVEEA 212 (1176)
T ss_pred hHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcC---CcEEEeecc--cCCCc---------ceEEeechhhHHHH
Confidence 455788888999999987754 689999999999999 999999975 44343 68889 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~ 187 (394)
+++.....+. ..|. -.++||+|++..+.+.+.+.-|.... .+.++ +-.+.| +++| +++.. +.|.
T Consensus 213 f~Ra~SEA~a-----aFGn--G~~FvEkF~ekPrHIEvQllgD~~GN-vvHLy--ERDCSv---QRRH-QKVVE--iAPA 276 (1176)
T KOG0369|consen 213 FQRAYSEALA-----AFGN--GTLFVEKFLEKPRHIEVQLLGDKHGN-VVHLY--ERDCSV---QRRH-QKVVE--IAPA 276 (1176)
T ss_pred HHHHHHHHHH-----hcCC--ceeeHHhhhcCcceeEEEEecccCCC-EEEEe--ecccch---hhhh-cceeE--eccc
Confidence 8887544431 2342 36889999988888889999997654 55565 445665 5555 55544 4555
Q ss_pred CCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC---CcEEEee---ceeecC
Q 016159 188 NGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG---KQLVAAD---AKLNFD 254 (394)
Q Consensus 188 ~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~---G~~~alD---aki~ld 254 (394)
..++++ +|.++++..|+..+- +.+.|.+ ....-..+||||.+..++ ..+.-+| |-+.+.
T Consensus 277 ~~Lp~~vR~~~~~davklAk~vgY~NAG------TvEFLvD--~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vA 348 (1176)
T KOG0369|consen 277 KTLPPEVRDAILTDAVKLAKHVGYENAG------TVEFLVD--QKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVA 348 (1176)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCcccCC------ceEEEEc--cCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhh
Confidence 556653 455666777765420 1111000 122456899999987543 2355555 334443
Q ss_pred cch-----hccchhhhc------cCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceee
Q 016159 255 DNA-----AFRQKEIFA------LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLD 323 (394)
Q Consensus 255 d~a-----~fR~~~~~~------~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD 323 (394)
..+ .++|..+.. .| .+.+||.. .+.+-.|+|-+.-.|.|.++ ++ |
T Consensus 349 eG~tLp~lgl~QdkI~trG~aIQCR-vTTEDPa~--------~FqPdtGriEVfRSgeGmGi-----------RL----D 404 (1176)
T KOG0369|consen 349 EGASLPDLGLTQDKITTRGFAIQCR-VTTEDPAK--------GFQPDTGRIEVFRSGEGMGI-----------RL----D 404 (1176)
T ss_pred cCCCcccccccccceeecceEEEEE-EeccCccc--------cCCCCCceEEEEEeCCCceE-----------ee----c
Confidence 221 234433310 01 11122211 24555688988888888543 11 1
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc
Q 016159 324 VGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL 377 (394)
Q Consensus 324 ~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~ 377 (394)
|++|. .--.=.|.-+.++|-....-.+-...|+.|++|+.|..+.
T Consensus 405 -~asaf--------aGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiR 449 (1176)
T KOG0369|consen 405 -GASAF--------AGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIR 449 (1176)
T ss_pred -Ccccc--------ccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhhc
Confidence 11111 1011248888888844444455677889999999996544
No 72
>PRK07206 hypothetical protein; Provisional
Probab=98.62 E-value=3.5e-07 Score=93.44 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCC---cEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK---ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~---PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
-+++..+++|.++|||+|++..+.+.+|+.++++++| + |+||||....| ++ ||.++ |.+|++
T Consensus 107 ~dK~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~~g---~~~~P~VvKP~~g~g--s~---------gv~~v~~~~el~ 172 (416)
T PRK07206 107 RNKAEMINALAEAGLPAARQINTADWEEAEAWLRENG---LIDRPVVIKPLESAG--SD---------GVFICPAKGDWK 172 (416)
T ss_pred hCHHHHHHHHHHcCCCcccEEecCCHHHHHHHHHhcC---CCCCCEEEeCCCCCC--CC---------CEEEeCCHHHHH
Confidence 5788899999999999999999999999999999987 6 99999965333 23 69999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEE
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIML 149 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~ 149 (394)
++++++++..- + .+.....++||||++ |.|+.+.+..
T Consensus 173 ~~~~~~~~~~~---~---~~~~~~~~lvEe~i~-G~E~sv~~~~ 209 (416)
T PRK07206 173 HAFNAILGKAN---K---LGLVNETVLVQEYLI-GTEYVVNFVS 209 (416)
T ss_pred HHHHHHHhccc---c---CCCCCCeEEEEEccc-cEEEEEEEEE
Confidence 99999865321 1 122225899999998 7899888775
No 73
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.60 E-value=3e-07 Score=97.94 Aligned_cols=281 Identities=16% Similarity=0.222 Sum_probs=170.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
+|.=++-.|+.+-.+.|+||-++. .+.+.||+.+.+++.| ||+.+|+.. ||-|+ |.+++ ++++
T Consensus 117 d~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~g---yPvmiKA~~--GGGGR---------GMR~vr~~~~ 182 (1149)
T COG1038 117 DMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYG---YPVMIKAAA--GGGGR---------GMRVVRSEAD 182 (1149)
T ss_pred HHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcC---CcEEEEEcc--CCCcc---------ceeeecCHHH
Confidence 343467789999999999986654 4678999999999999 999999964 44454 69999 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP 183 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~ 183 (394)
+.+++++.-.... ...|. ..|+||+++...+.+.+.+.-|.... -|.+|- =.++| +++| +++..
T Consensus 183 l~~~~~~AksEAk-----aAFG~--~eVyvEk~ve~pkHIEVQiLgD~~Gn-vvHLfE--RDCSv---QRRh-QKVVE-- 246 (1149)
T COG1038 183 LAEAFERAKSEAK-----AAFGN--DEVYVEKLVENPKHIEVQILGDTHGN-VVHLFE--RDCSV---QRRH-QKVVE-- 246 (1149)
T ss_pred HHHHHHHHHHHHH-----HhcCC--CcEEhhhhhcCcceeEEEEeecCCCC-EEEEee--cccch---hhcc-ceeEE--
Confidence 9998888643321 12453 58999999988889999999998764 777774 45665 5666 56644
Q ss_pred cCCCCCCCHHHH-------HHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC---CcEEEee---ce
Q 016159 184 IDVFNGITDEDA-------AKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG---KQLVAAD---AK 250 (394)
Q Consensus 184 v~p~~gl~~~~a-------~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~---G~~~alD---ak 250 (394)
+.|...+++++- .+++++.++.++ -+++.|-. .+.....+|+||.+.-++ ..++-+| +-
T Consensus 247 ~APa~~L~~~~R~~ic~~Avkla~~~~Y~~A------GTvEFLvd--~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQ 318 (1149)
T COG1038 247 VAPAPYLSPELRDEICDDAVKLARNIGYINA------GTVEFLVD--EDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQ 318 (1149)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccc------ceEEEEEc--CCCcEEEEEecCceeeEEeeeeeeechhHHHHH
Confidence 466666887543 344555565431 11111100 122567899999988554 2355556 33
Q ss_pred eecCcc--------hhccchhhhccC-----CCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCC
Q 016159 251 LNFDDN--------AAFRQKEIFALR-----DPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGT 317 (394)
Q Consensus 251 i~ldd~--------a~fR~~~~~~~~-----~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~ 317 (394)
+.+-+- ...+|+++.-.. ..+-+||.. ++.+--|+|-..=.++|.++
T Consensus 319 i~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n--------~F~PDtGrI~aYRs~gGfGV------------ 378 (1149)
T COG1038 319 IHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPEN--------GFIPDTGRITAYRSAGGFGV------------ 378 (1149)
T ss_pred HHHhccCccCCcccCCCccccccccceEEEEEeeccCccc--------CCCCCCceEEEEecCCCceE------------
Confidence 333332 233344331100 011122222 25566688877767776543
Q ss_pred ccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc
Q 016159 318 PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL 377 (394)
Q Consensus 318 ~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~ 377 (394)
=||.|-+-....+ .|--+.+||-...--..+.+..+-++++++|..+.
T Consensus 379 ---RLD~Gn~~~GavI---------tpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrIr 426 (1149)
T COG1038 379 ---RLDGGNAYAGAVI---------TPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRIR 426 (1149)
T ss_pred ---EecCCccccccee---------ccccccceeeEeecCCCHHHHHHHHHHHHHHheec
Confidence 1332222111111 24556666633332244556666778888885443
No 74
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.59 E-value=2.8e-07 Score=93.06 Aligned_cols=96 Identities=14% Similarity=0.249 Sum_probs=75.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeC------CHHHHHHH-HHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVA------SVDEVKKA-IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~------s~eea~~~-a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~- 99 (394)
...+++.+|++|+++|||||++..++ +.+++.+. .+.+| +|++|||.. +|.+. ||.++
T Consensus 126 l~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~lg---~PviVKP~~--~GsS~---------Gv~~v~ 191 (364)
T PRK14570 126 ISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKEVLG---YPVIVKPAV--LGSSI---------GINVAY 191 (364)
T ss_pred HHHCHHHHHHHHHHcCCCCCCEEEEeccccccchHHHHHHHHHhcC---CCEEEEeCC--CCCCC---------cEEEeC
Confidence 45679999999999999999987664 34555443 45687 999999954 44344 68899
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
|.+|+.+++++.+.. + ..++|||+++ ++|+.+++..|.
T Consensus 192 ~~~el~~al~~a~~~----------~---~~vlVEefI~-GrEi~v~Vlg~~ 229 (364)
T PRK14570 192 NENQIEKCIEEAFKY----------D---LTVVIEKFIE-AREIECSVIGNE 229 (364)
T ss_pred CHHHHHHHHHHHHhC----------C---CCEEEECCcC-CEEEEEEEECCC
Confidence 999999999887632 1 4699999998 899999998664
No 75
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.58 E-value=9e-07 Score=90.40 Aligned_cols=196 Identities=16% Similarity=0.228 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 31 HEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~~--~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
.+..+|+++++.|+|+-++ -...|.|++.+.|+++| |||.+|+. +||-|| |.+++ +++|.++.
T Consensus 111 ~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIg---yPvMiKa~--~GGGGk---------GMria~~~~ef~~~ 176 (670)
T KOG0238|consen 111 DKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIG---YPVMIKAT--AGGGGK---------GMRIAWSEEEFEEG 176 (670)
T ss_pred chHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcC---CcEEEEec--cCCCCc---------ceEeecChHHHHHH
Confidence 4678999999999998777 45688999999999999 99999995 466677 79999 99998887
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~ 187 (394)
++......- ...|. +++|+|+|++..+.+.+.+.-|... -.+-++ +=.+.| ++++ +++.....+|
T Consensus 177 ~~~ak~Ea~-----~sFGd--d~~llEkfi~npRHiEvQv~gD~hG--nav~l~-ERdCSv---QRRn-QKiiEEaPap- 241 (670)
T KOG0238|consen 177 LESAKQEAA-----KSFGD--DGMLLEKFIDNPRHIEVQVFGDKHG--NAVHLG-ERDCSV---QRRN-QKIIEEAPAP- 241 (670)
T ss_pred HHHHHHHHH-----hhcCc--chhhHHHhccCCceEEEEEEecCCC--cEEEec-ccccch---hhhh-hhhhhcCCCC-
Confidence 766532211 12342 6899999999889999999999753 567666 666765 5565 6666664444
Q ss_pred CCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC---CcEEEee-----ceee
Q 016159 188 NGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG---KQLVAAD-----AKLN 252 (394)
Q Consensus 188 ~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~---G~~~alD-----aki~ 252 (394)
.++.+ .|.++++.+|+.++ -+++.+.+ ....+..+|.|-.+.-++ ..++.+| -|+.
T Consensus 242 -~l~~e~R~~lgeaAv~aa~avgY~~a------GTVEFi~D--~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA 312 (670)
T KOG0238|consen 242 -NLPEETRRALGEAAVRAAKAVGYVGA------GTVEFIVD--SKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVA 312 (670)
T ss_pred -CCCHHHHHHHHHHHHHHHHhhCCccc------ceEEEEEc--CCCcEEEEEeeceeeecccchhhccchHHHHHHHHHh
Confidence 35543 22333344443221 01111111 122567889998776543 1255566 3344
Q ss_pred cCcchhccchhh
Q 016159 253 FDDNAAFRQKEI 264 (394)
Q Consensus 253 ldd~a~fR~~~~ 264 (394)
-.+.-.+.|.++
T Consensus 313 ~ge~lp~~q~ei 324 (670)
T KOG0238|consen 313 AGEPLPLKQEEI 324 (670)
T ss_pred cCCCCCCCccee
Confidence 444445566554
No 76
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.58 E-value=3.2e-07 Score=100.45 Aligned_cols=92 Identities=24% Similarity=0.267 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh-CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC----CHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEV 104 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l-g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~----s~ee~ 104 (394)
-+++.+|++|+++|||||++.++.+.+++.++++++ | +|+||||.. |+.|+ ||.+. +.+++
T Consensus 487 ~DK~~tk~lL~~~GIpvP~~~~~~~~e~a~~~~~~~~g---~PvVVKP~~--g~~G~---------GV~~~~~~~~~eel 552 (752)
T PRK02471 487 ENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFAD---KAIVVKPKS--TNFGL---------GISIFKEPASLEDY 552 (752)
T ss_pred hCHHHHHHHHHHCCcCCCCEEEEcCHHHHHHHHHHhcC---CCEEEEECC--CCCcC---------CeEEecCcCCHHHH
Confidence 488999999999999999999999999998888775 5 899999975 44455 57653 78888
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEE
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIML 149 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~ 149 (394)
.++++..+.. + ..++||||++ |+|+.+.+..
T Consensus 553 ~~A~~~a~~~----------~---~~vlVEEfI~-G~E~Rv~Vig 583 (752)
T PRK02471 553 EKALEIAFRE----------D---SSVLVEEFIV-GTEYRFFVLD 583 (752)
T ss_pred HHHHHHHHhc----------C---CcEEEEeccc-CCEEEEEEEC
Confidence 8888776422 1 4799999997 8999988763
No 77
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=98.58 E-value=2.5e-07 Score=92.62 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=75.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
...++..+|++|+++|||+|++..+++.++.. .+.++ +|+||||.. +|.++ ||.++ |.+|+.+
T Consensus 129 i~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~--~~~l~---~P~iVKP~~--~gsS~---------Gv~~v~~~~eL~~ 192 (343)
T PRK14568 129 LCMDKSLAYIVAKNAGIATPAFWTVTADERPD--AATLT---YPVFVKPAR--SGSSF---------GVSKVNSADELDY 192 (343)
T ss_pred HHhCHHHHHHHHHHcCcCcCCEEEEECCchhh--hhhcC---CCEEEEeCC--CCCCC---------CEEEeCCHHHHHH
Confidence 44678899999999999999999988765432 34677 999999964 34344 79999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++++.... + ..++|||+++ ++|+.+++..|+.
T Consensus 193 a~~~a~~~----------~---~~vlVEe~I~-G~E~sv~vl~~~~ 224 (343)
T PRK14568 193 AIESARQY----------D---SKVLIEEAVV-GSEVGCAVLGNGA 224 (343)
T ss_pred HHHHHHhc----------C---CcEEEECCcC-CEEEEEEEEcCCC
Confidence 98876422 1 4799999998 7999999987643
No 78
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.47 E-value=4.4e-06 Score=84.15 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=74.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
..-+...-|++|+++|||+|+. +.++++ ++ +|+||||.... .|| ||.++ |.+|+.+
T Consensus 120 ~e~dK~~~k~~L~~aGIp~p~~--~~~~~~-------i~---~PvIVKp~~g~--ggk---------Gv~i~~s~~El~~ 176 (358)
T PRK13278 120 WEADRDKERKLLEEAGIRIPRK--YESPED-------ID---RPVIVKLPGAK--GGR---------GYFIAKSPEEFKE 176 (358)
T ss_pred HhcCHHHHHHHHHHcCCCCCCE--eCCHHH-------cC---CCEEEEeCCCC--CCC---------CeEEeCCHHHHHH
Confidence 4455777899999999999985 566654 45 89999995433 344 69999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
++++++++.. .+. .+.++||||+. |.|+++-+...+-.+ -+-++|
T Consensus 177 ~~~~l~~~~~-------~~~-~~~~iIEEfI~-G~e~sv~~f~s~~~~-~~e~l~ 221 (358)
T PRK13278 177 KIDKLIERGL-------ITE-VEEAIIQEYVV-GVPYYFHYFYSPIKN-RLELLG 221 (358)
T ss_pred HHHHHHhccc-------cCC-CCeEEEEecCC-CcEEEEEEEEeccCC-eEEEEe
Confidence 9999875432 122 36899999998 889999988764322 344444
No 79
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.45 E-value=1.4e-06 Score=85.94 Aligned_cols=101 Identities=25% Similarity=0.275 Sum_probs=78.5
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHH--HHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKK--AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~--~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
..-+++..+++|.++|||+|++..+++.+++.+ ..++++ +|+|+||.. |..|+ ||.++ |.+++
T Consensus 108 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~---~P~viKP~~--g~~s~---------gv~~v~~~~el 173 (326)
T PRK12767 108 ICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQ---FPLFVKPRD--GSASI---------GVFKVNDKEEL 173 (326)
T ss_pred HHhcHHHHHHHHHHcCCCCCCEEcccCHHHHHhhhhcccCC---CCEEEEeCC--CCCcc---------CeEEeCCHHHH
Confidence 335778899999999999999999999999887 456677 999999954 32233 68888 99998
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
.+++++. ..++|||+++ +.|+.+.+..|... .++..+.
T Consensus 174 ~~~~~~~-----------------~~~lvqeyi~-G~e~~v~~~~~~~G-~~~~~~~ 211 (326)
T PRK12767 174 EFLLEYV-----------------PNLIIQEFIE-GQEYTVDVLCDLNG-EVISIVP 211 (326)
T ss_pred HHHHHhC-----------------CCeEEEeccC-CceEEEEEEEcCCC-CEEEEEE
Confidence 8776542 2789999996 89999999988543 3554443
No 80
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.45 E-value=5.8e-07 Score=82.49 Aligned_cols=94 Identities=22% Similarity=0.304 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh-CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHH
Q 016159 32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (394)
Q Consensus 32 E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l-g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~ 109 (394)
+.-...+|+++|||+|++.++.+++++.++.+++ + +|+|+||.. |++|+ ||.+. +++++.+..+
T Consensus 4 K~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~~~---~p~ViKp~~--g~~G~---------gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 4 KLLTLQLLAKAGIPVPETRVTNSPEEAKEFIEELGG---FPVVIKPLR--GSSGR---------GVFLINSPDELESLLD 69 (190)
T ss_dssp HHHHHHHHHHTT-----EEEESSHHHHHHHHHHH-----SSEEEE-SB------------------EEEESHCHHHHHHH
T ss_pred HHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcC---CCEEEeeCC--CCCCC---------EEEEecCHHHHHHHHH
Confidence 4567889999999999999999999999999999 6 899999954 55565 68888 9999887765
Q ss_pred HHhcccccccccCCCCcccceEEEEeeeCCC--eeEEEEEEEecc
Q 016159 110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLV--NEMYFAIMLDRK 152 (394)
Q Consensus 110 ~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~--~E~ylgi~~Dr~ 152 (394)
..... . ..+++|||++.. +++.+-+.-+.-
T Consensus 70 ~~~~~----------~---~~~~~Q~fI~~~~g~d~Rv~Vig~~v 101 (190)
T PF08443_consen 70 AFKRL----------E---NPILVQEFIPKDGGRDLRVYVIGGKV 101 (190)
T ss_dssp ---------------T---TT-EEEE----SS---EEEEEETTEE
T ss_pred HHHhc----------c---CcceEeccccCCCCcEEEEEEECCEE
Confidence 53211 1 367999999754 477776655443
No 81
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.44 E-value=1.4e-06 Score=92.47 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE-C-CHHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVED 106 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l-~-s~ee~~~ 106 (394)
.-++..+|++|++.|||||++..+.+++++.++++++| |+||||.. |+.|+ ||.+ . |++++.+
T Consensus 295 ~~DK~~tk~lL~~aGIpVP~~~~~~~~~~~~~~~~~~G----~vVVKP~~--G~~G~---------Gv~v~v~~~~eL~~ 359 (547)
T TIGR03103 295 CDDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEHG----AVVVKPVR--GEQGK---------GISVDVRTPDDLEA 359 (547)
T ss_pred hcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhC----CEEEEECC--CCCCc---------CeEEecCCHHHHHH
Confidence 35789999999999999999999999999999999995 69999954 55555 6887 5 9999998
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D 150 (394)
+++..... + ..++||++++ +.|+.+.|..+
T Consensus 360 a~~~a~~~----------~---~~vlvEe~i~-G~d~Rv~Vigg 389 (547)
T TIGR03103 360 AIAKARQF----------C---DRVLLERYVP-GEDLRLVVIDF 389 (547)
T ss_pred HHHHHHhc----------C---CcEEEEEecc-CCeEEEEEECC
Confidence 88876422 1 4799999997 78888876544
No 82
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.43 E-value=1.8e-06 Score=96.66 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=81.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
..-+++..|++|+++|||+|++..+++.+|+.+++++++ ||+||||....| |+ ||.++ |.+|+.+
T Consensus 104 ~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~~---~PvVVKP~~g~g--S~---------GV~~v~~~~el~~ 169 (887)
T PRK02186 104 TCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLT---YPVVVKPRMGSG--SV---------GVRLCASVAEAAA 169 (887)
T ss_pred HhcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhCC---CCEEEEeCCCCC--CC---------CeEEECCHHHHHH
Confidence 346788899999999999999999999999999998998 999999965333 33 69999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++.... -..++||||++ |.|+.+.+..+..
T Consensus 170 a~~~~~~~~------------~~~~lvEEfI~-G~E~sVe~i~~~g 202 (887)
T PRK02186 170 HCAALRRAG------------TRAALVQAYVE-GDEYSVETLTVAR 202 (887)
T ss_pred HHHHHHhcC------------CCcEEEeeccc-CCcEEEEEEEECC
Confidence 988875321 14799999998 6899998887753
No 83
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.37 E-value=2.7e-06 Score=82.04 Aligned_cols=101 Identities=17% Similarity=0.085 Sum_probs=74.5
Q ss_pred hccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 26 ~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
-+...++...+++|+++|||+|++..+.+++++.++...++ +|+|+||..-.+ |+ ||.+. +.+++
T Consensus 82 ~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~---~P~vvKP~~g~~--g~---------gv~~v~~~~~l 147 (280)
T TIGR02144 82 IEACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALG---YPVVLKPVIGSW--GR---------LVALIRDKDEL 147 (280)
T ss_pred HHHHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHcC---CCEEEEECcCCC--cC---------CEEEECCHHHH
Confidence 34557788899999999999999999999999998888888 999999965322 33 58888 98888
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEE
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIML 149 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~ 149 (394)
.++.+...... +..-..+++|||++. +.|+.+.+..
T Consensus 148 ~~~~~~~~~~~---------~~~~~~~ivQefI~~~~~d~~v~vig 184 (280)
T TIGR02144 148 ESLLEHKEVLG---------GSQHKLFYIQEYINKPGRDIRVFVIG 184 (280)
T ss_pred HHHHHHHHhhc---------CCcCCeEEEEcccCCCCCceEEEEEC
Confidence 87654321100 001146899999974 6787776653
No 84
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.31 E-value=5.1e-06 Score=79.54 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=72.6
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
+...+++..+++|+++|||+|++..+.+++++.+..++++ +|+|+||..-. .|+ ||.+. +.+++.
T Consensus 84 ~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~~---~p~vvKP~~g~--~g~---------gv~~i~~~~~l~ 149 (277)
T TIGR00768 84 LNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIG---FPVVLKPVFGS--WGR---------LVSLARDKQAAE 149 (277)
T ss_pred HHHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhcC---CCEEEEECcCC--CCC---------ceEEEcCHHHHH
Confidence 3457788889999999999999999999999999999997 89999997533 243 68888 999888
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCC--eeEEEEE
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLV--NEMYFAI 147 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~--~E~ylgi 147 (394)
+.++.+.... ..-..++|||+++.. .|+.+-+
T Consensus 150 ~~~~~~~~~~----------~~~~~~lvQe~I~~~~~~~~rv~v 183 (277)
T TIGR00768 150 TLLEHFEQLN----------GPQNLFYVQEYIKKPGGRDIRVFV 183 (277)
T ss_pred HHHHHHHHhc----------ccCCcEEEEeeecCCCCceEEEEE
Confidence 7766542111 011479999999853 3544443
No 85
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.27 E-value=3.2e-06 Score=84.08 Aligned_cols=163 Identities=23% Similarity=0.211 Sum_probs=102.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC--CHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~--s~ee~~ 105 (394)
+.-+++...+.+++.|||+|++..++|.+|.+++.++++....|+.|||..-.||+| +++. +.+++.
T Consensus 104 ~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~G-----------Fr~l~~~~~~l~ 172 (329)
T PF15632_consen 104 LADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVGIGGRG-----------FRVLDESRDELD 172 (329)
T ss_pred HHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccCCCcce-----------EEEEccCcchHH
Confidence 335677888899999999999999999999999999987233569999987666543 4444 444433
Q ss_pred HHHH------------HHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceee-eecc-CCCcceeec
Q 016159 106 DLAG------------KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII-IGCS-KGGTSIEDL 171 (394)
Q Consensus 106 ~a~~------------~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi-~~s~-~GGv~iE~~ 171 (394)
...+ ++++. ...+...+|.||++ |.|+.|-+..+. | -++ .+.+ ..|. .
T Consensus 173 ~l~~~~~~~i~~~~~~~~l~~----------~~~~~~llvMeyL~-G~EySVD~l~~~--G-~viaaV~R~K~G~-~--- 234 (329)
T PF15632_consen 173 ALFEPDSRRISLDELLAALQR----------SEEFPPLLVMEYLP-GPEYSVDCLADE--G-RVIAAVPRRKLGR-R--- 234 (329)
T ss_pred HhcCCCcceeCHHHHHHHHhc----------cCCCCCcEEecCCC-CCeEEEEEEecC--C-EEEEEEEEEecCc-e---
Confidence 3222 11211 12347899999999 899999999987 3 343 3331 1221 1
Q ss_pred cccCCCeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceee
Q 016159 172 AEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAE 238 (394)
Q Consensus 172 ~~~~pd~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv 238 (394)
..+--++ --.+.|+++++.+|+.+.-.-|+. .-.+....+|||||..-
T Consensus 235 --------q~l~~~~---~l~e~a~~l~~~~~l~g~~NiQ~r--------~d~~g~p~LLEINpR~s 282 (329)
T PF15632_consen 235 --------QVLENDE---ELIELARRLAEAFGLDGLFNIQFR--------YDEDGNPKLLEINPRPS 282 (329)
T ss_pred --------eEEEECH---HHHHHHHHHHHHhCCCceEEEEEE--------EcCCCCEEEEEeCCCCc
Confidence 1111111 012567788888887542111111 00123467999999865
No 86
>PRK06849 hypothetical protein; Provisional
Probab=98.27 E-value=3.1e-06 Score=85.96 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=65.2
Q ss_pred hhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh-CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159 25 LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (394)
Q Consensus 25 ~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l-g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e 102 (394)
.-.+..+++..++++++.|||+|++..+.+++++.+++.+. + +|+|+||....+ | .||.+. +.+
T Consensus 110 ~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~~~~~~~---~P~vlKP~~~~~--~---------~~v~~~~~~~ 175 (389)
T PRK06849 110 LLLLLHNKWEFAEQARSLGLSVPKTYLITDPEAIRNFMFKTPH---TPYVLKPIYSRF--V---------RRVDLLPKEA 175 (389)
T ss_pred HHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHhhcCCC---CcEEEEeCcccC--C---------CeEEEecCHH
Confidence 33455788999999999999999999999999998887775 5 899999965322 1 367777 733
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEE
Q 016159 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIM 148 (394)
Q Consensus 103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~ 148 (394)
++. .+ .. . .-..++|||+++ |.|+.+-..
T Consensus 176 ~l~----~~---~~--------~-~~~~~ivQe~I~-G~e~~~~~~ 204 (389)
T PRK06849 176 ALK----EL---PI--------S-KDNPWVMQEFIQ-GKEYCSYSI 204 (389)
T ss_pred Hhc----cc---cc--------C-CCCCeEEEEEec-CCeEEEEEE
Confidence 221 11 00 0 113689999999 567644433
No 87
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1e-05 Score=80.40 Aligned_cols=105 Identities=21% Similarity=0.213 Sum_probs=76.1
Q ss_pred HHhhhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHH-HhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC
Q 016159 21 QQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQ-DAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV 99 (394)
Q Consensus 21 ~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~-~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~ 99 (394)
|..|.-+..-.+..+-++|.+.|+|+|++.++.+++++....+ .+| +|+|+||-. |..|+ ||.++
T Consensus 109 N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g---~pvVlKp~~--Gs~G~---------gV~~v 174 (318)
T COG0189 109 NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLG---FPVVLKPLD--GSGGR---------GVFLV 174 (318)
T ss_pred CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhcC---CCEEEeeCC--CCCcc---------ceEEe
Confidence 3344445556778889999999999999999999866655554 556 899999954 43444 68888
Q ss_pred -CHH-HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 100 -KKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 100 -s~e-e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
|.+ ++.+..+.+.+.. .+.+++|||++.....+..+....
T Consensus 175 ~~~d~~l~~~~e~~~~~~------------~~~~ivQeyi~~~~~~~rrivv~~ 216 (318)
T COG0189 175 EDADPELLSLLETLTQEG------------RKLIIVQEYIPKAKRDDRRVLVGG 216 (318)
T ss_pred cCCChhHHHHHHHHhccc------------cceEehhhhcCcccCCcEEEEEeC
Confidence 887 7777766664321 136899999987776666666553
No 88
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.13 E-value=1.7e-05 Score=77.16 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=67.6
Q ss_pred cCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccc
Q 016159 42 YGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQ 120 (394)
Q Consensus 42 ~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q 120 (394)
.|+|+.++..+.|.+|..++++++| ||+|+||.....|+| =.++ ++|++.++|+.......
T Consensus 125 LglpTs~Y~fa~s~~e~~~a~~~iG---fPcvvKPvMSSSGkG-----------qsvv~~~e~ve~AW~~A~~g~R---- 186 (394)
T COG0027 125 LGLPTSKYRFADSLEELRAAVEKIG---FPCVVKPVMSSSGKG-----------QSVVRSPEDVEKAWEYAQQGGR---- 186 (394)
T ss_pred hCCCCccccccccHHHHHHHHHHcC---CCeecccccccCCCC-----------ceeecCHHHHHHHHHHHHhcCC----
Confidence 5999999999999999999999999 999999977654433 2345 99999999998753321
Q ss_pred cCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159 121 TGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (394)
Q Consensus 121 ~~~~g~~v~~vlVee~v~~~~E~ylgi~~D 150 (394)
|. -..|+||++++...|+.+-..+.
T Consensus 187 ----~~-~~RVIVE~fv~fd~EiTlLtvr~ 211 (394)
T COG0027 187 ----GG-SGRVIVEEFVKFDFEITLLTVRA 211 (394)
T ss_pred ----CC-CCcEEEEEEecceEEEEEEEEEE
Confidence 21 25899999999888876655443
No 89
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.13 E-value=3.5e-05 Score=77.28 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHH
Q 016159 32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGK 110 (394)
Q Consensus 32 E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~ 110 (394)
++...++|.++||++|+... +++ ++. +||+|||....|.=|+ |+.++ |++|+...+++
T Consensus 127 Kk~~yk~L~~aGI~~Pk~~~--~p~-------eId---~PVIVKp~~asG~~sr---------G~f~a~s~eEl~~~a~~ 185 (366)
T PRK13277 127 EKNYYWLLEKAGIPYPKLFK--DPE-------EID---RPVIVKLPEAKRRLER---------GFFTASSYEDFYEKSEE 185 (366)
T ss_pred HHHHHHHHHHcCCCCceeec--Ccc-------ccC---ccEEEEECCCCCcccc---------CeEeeCCHHHHHHHHHh
Confidence 34444599999999998765 443 455 8999999754431123 68888 99999988888
Q ss_pred HhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 111 MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 111 ~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
+.....++. ...+..+||||+. |.|+++-+..|+-.+ -+.++|
T Consensus 186 l~~~g~I~~------~~~~~~iIQEyI~-G~ey~~d~F~s~l~g-~ve~l~ 228 (366)
T PRK13277 186 LIKAGVIDR------EDLKNARIEEYVI-GAHFNFNYFYSPIRD-RLELLG 228 (366)
T ss_pred hhhcCcccc------cccccceeEeccC-CCEEEEEEEEeccCC-cEEEEE
Confidence 754332221 1236789999998 899999999997544 355554
No 90
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.00042 Score=68.86 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=72.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCC----HHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVAS----VDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s----~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e 102 (394)
.......+|.+++..|+|++++...+. .....+....++ +|++|||.-. |..- |+..+ +.+
T Consensus 100 ~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~---~p~~Vkp~~~--gSSv---------g~~~v~~~~ 165 (317)
T COG1181 100 GAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLG---FPLFVKPARE--GSSV---------GRSPVNVEG 165 (317)
T ss_pred hcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhcccC---CCEEEEcCCc--ccee---------eEEEeeecc
Confidence 345678899999999999999988764 233445555666 9999999642 2222 56667 788
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+.+++.+..+... +.+++|+++. ++|+.+++..+..
T Consensus 166 d~~~~~e~a~~~d-------------~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 166 DLQSALELAFKYD-------------RDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred chHHHHHHHHHhC-------------CceeeccCCC-cceEEEEecCCcc
Confidence 8888666665432 5899999999 9999999998855
No 91
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.67 E-value=6.2e-05 Score=84.78 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=98.8
Q ss_pred eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccce
Q 016159 52 VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSK 130 (394)
Q Consensus 52 ~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~ 130 (394)
+++++|..++|+.+| ||+.+|+. -||-|| |++-+ +.|+.+..+++..+.. +| +.
T Consensus 225 v~~~eegLeaae~IG---fPvMIKAS--EGGGGK---------GIRkv~n~ddF~~lf~qv~~Ev--------PG---SP 279 (2196)
T KOG0368|consen 225 VRNVEEGLEAAEKIG---FPVMIKAS--EGGGGK---------GIRKVENEDDFKALFKQVQNEV--------PG---SP 279 (2196)
T ss_pred cCCHHHHHHHHHhcC---CceEEEec--cCCCCc---------ceeeccchHHHHHHHHHHHhhC--------CC---Cc
Confidence 578999999999999 99999994 366688 79999 9999999999986543 45 67
Q ss_pred EEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEE-ecCCCCCCC----HHHHHHHHHhCCCC
Q 016159 131 VYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKV-PIDVFNGIT----DEDAAKVVDGLAPK 205 (394)
Q Consensus 131 vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~-~v~p~~gl~----~~~a~~l~~~lg~~ 205 (394)
++|.+-.+..+.+.+.+..|.-. -+|... .=.+.| +++| ++|... |+.....-+ +..|.++++..|+-
T Consensus 280 IFlMK~a~~ARHlEVQlLaDqYG--n~IsLf-gRDCSi---QRRh-QKIIEEAPatIap~etf~~Me~~AvrLak~VGYv 352 (2196)
T KOG0368|consen 280 IFLMKLADQARHLEVQLLADQYG--NVISLF-GRDCSI---QRRH-QKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYV 352 (2196)
T ss_pred eeeeecccCcceeeeehhhhhcC--CEeEee-cccchH---HHHH-HHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcce
Confidence 89999999899999999999754 455443 224554 5555 555543 322210000 02334444444542
Q ss_pred cccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC
Q 016159 206 VADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG 241 (394)
Q Consensus 206 ~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~ 241 (394)
. +.+++-||.. .+.....||+||...-++
T Consensus 353 S------AGTVEYLYsp-~d~~fyFLELNPRLQVEH 381 (2196)
T KOG0368|consen 353 S------AGTVEYLYSP-DDGEYYFLELNPRLQVEH 381 (2196)
T ss_pred e------cceEEEEEec-CCCcEEEEecCccccccC
Confidence 2 1222222322 134567899999988654
No 92
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=97.19 E-value=0.0008 Score=60.09 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHH
Q 016159 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~ 109 (394)
+++...++|++.|||+|.......++. .. +|+|+||..-.|| . |+.+. +.+++.....
T Consensus 3 dK~~~~~~L~~~gi~~P~~~~~~~~~~-------~~---~~~viKp~~G~Gg--~---------~i~~~~~~~~~~~~~~ 61 (161)
T PF02655_consen 3 DKLKTYKFLKELGIPVPTTLRDSEPEP-------ID---GPWVIKPRDGAGG--E---------GIRIVDSEDELEEFLN 61 (161)
T ss_dssp SHHHHHHHHTTT-S--------EESS---------S---SSEEEEESS------------------B--SS--TTE----
T ss_pred CHHHHHHHHHccCCCCCCccccccccc-------cC---CcEEEEeCCCCCC--C---------CeEEECCchhhccccc
Confidence 567889999999999993222221111 12 7999999643332 2 45555 5544332111
Q ss_pred HHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 110 ~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
...++||+++ |.++.+.+..+...
T Consensus 62 -------------------~~~i~Qe~i~-G~~~Sv~~l~~~~~ 85 (161)
T PF02655_consen 62 -------------------KLRIVQEFIE-GEPYSVSFLASGGG 85 (161)
T ss_dssp ----------------------EEEE----SEEEEEEEEE-SSS
T ss_pred -------------------cceEEeeeeC-CEEeEEEEEEeCCc
Confidence 1128999998 89999999888654
No 93
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=97.15 E-value=0.00028 Score=76.92 Aligned_cols=133 Identities=21% Similarity=0.312 Sum_probs=98.5
Q ss_pred HHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhccccc
Q 016159 39 MAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILV 117 (394)
Q Consensus 39 L~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~ 117 (394)
|.+.+.++.++..+.+.|||.++++++| |||++.+...-||-|. | ++ +.+|+.+.+..-+..+
T Consensus 506 m~ei~e~ia~s~a~~sie~al~aae~l~---ypvivRaayalgglgS---------g--fa~n~eeL~~l~~~a~a~s-- 569 (1435)
T KOG0370|consen 506 LNEINEKIAPSEAVSTIEEALEAAERLG---YPVIVRAAYALGGLGS---------G--FANNEEELQDLAAQALALS-- 569 (1435)
T ss_pred HHhhcccccchhhHhHHHHHHHHHHhcC---cHHHHHHHHHhcCccc---------c--ccccHHHHHHHHhhccccC--
Confidence 3456899999999999999999999998 9999998766676553 2 56 8999988877766543
Q ss_pred ccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEE---EecCCCCCCCHHH
Q 016159 118 TKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK---VPIDVFNGITDED 194 (394)
Q Consensus 118 ~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~---~~v~p~~gl~~~~ 194 (394)
.++|||+.+.+++|...-+.+|... -+|.++. .|.++ |--+++ +-+.|...+++++
T Consensus 570 -----------~QilvekSlkGwkevEyevvrDa~~--nciTvcn-----men~D---plgihtGdSiVvapsqtlsd~e 628 (1435)
T KOG0370|consen 570 -----------PQILVEKSLKGWKEVEYEVVRDAYD--NCITVCN-----MENFD---PLGIHTGDSIVVAPSQTLSDEE 628 (1435)
T ss_pred -----------ceeeehhhhccccceEEEEEecccc--chhhhcC-----CcccC---cceeeccceEEEeeccccChHH
Confidence 5899999999999999999999876 4777774 34443 333333 3467887787743
Q ss_pred H-------HHHHHhCCCCccc
Q 016159 195 A-------AKVVDGLAPKVAD 208 (394)
Q Consensus 195 a-------~~l~~~lg~~~~~ 208 (394)
- .+++++||..++.
T Consensus 629 y~mlrttaikVirhlgvvGEc 649 (1435)
T KOG0370|consen 629 YQMLRTTAIKVIRHLGVVGEC 649 (1435)
T ss_pred HHHHHhcchhheeccCCcccc
Confidence 2 3446777766543
No 94
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=96.97 E-value=0.0048 Score=61.26 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=51.7
Q ss_pred hcccccchhhHHhhhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCC
Q 016159 11 SRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL 85 (394)
Q Consensus 11 ~~~~~~~~~~~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK 85 (394)
.|++.++-++|+.....+.=+++.+..+|+++|||+|+...+.+.+.+.+...++-.+..|||+||.. |..|+
T Consensus 17 ~~~~~~~~~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~--Gs~Gr 89 (317)
T TIGR02291 17 KRNADYILRYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQ--GSGGK 89 (317)
T ss_pred cchHHHHHhcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECC--CCCcc
Confidence 35566667776666656666788999999999999999998888775555555441011379999965 54555
No 95
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=96.96 E-value=0.0038 Score=62.36 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHcC-------CCCCCceeeCCHHHHH---HHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC
Q 016159 30 IHEYQGAELMAKYG-------INVPKGLAVASVDEVK---KAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV 99 (394)
Q Consensus 30 L~E~~aK~lL~~~G-------Ipvp~~~~~~s~eea~---~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~ 99 (394)
.+....-.+|++.| ||+|+..++.+.+.+. ....+++ +|+|+||..-+ |..++ .++.+.
T Consensus 106 ~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~---~P~V~KPl~g~-Gss~g-------h~m~lv 174 (328)
T PLN02941 106 HNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLK---FPLVAKPLVAD-GSAKS-------HKMSLA 174 (328)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCC---CCEEEeecccC-CCccc-------cceEEe
Confidence 55667778899999 9999999999987755 3334566 99999997643 23332 478888
Q ss_pred -CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEEec
Q 016159 100 -KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDR 151 (394)
Q Consensus 100 -s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~Dr 151 (394)
+++++.. + + ..+++|||+.+ ++-+-+=+.-|+
T Consensus 175 ~~~~~L~~---------l--------~---~p~~lQEfVnh~g~d~RVfVvGd~ 208 (328)
T PLN02941 175 YDQEGLSK---------L--------E---PPLVLQEFVNHGGVLFKVYVVGDY 208 (328)
T ss_pred cCHHHHHh---------c--------C---CcEEEEEecCCCCEEEEEEEECCE
Confidence 8877664 1 1 14899999976 444444444443
No 96
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0057 Score=60.02 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=67.4
Q ss_pred HHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcc
Q 016159 36 AELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQ 114 (394)
Q Consensus 36 K~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~ 114 (394)
..||.+.||+.|+ ...+|||. . .||+||.+...| |+ |..++ |++|..+.+++++..
T Consensus 129 ~~lLekAgi~~P~--~~~~PeeI-------d---r~VIVK~pgAkg--gR---------GyFiA~s~eef~ek~e~l~~~ 185 (361)
T COG1759 129 YKLLEKAGLRIPK--KYKSPEEI-------D---RPVIVKLPGAKG--GR---------GYFIASSPEEFYEKAERLLKR 185 (361)
T ss_pred HHHHHHcCCCCCc--ccCChHHc-------C---CceEEecCCccC--Cc---------eEEEEcCHHHHHHHHHHHHHc
Confidence 5799999999997 56788874 3 699999976545 33 57788 999999999999876
Q ss_pred cccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCC
Q 016159 115 ILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTA 154 (394)
Q Consensus 115 ~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~ 154 (394)
-.++. +-.+...||||+- |.-+|+-....+-.+
T Consensus 186 gvi~~------edlkna~IeEYv~-G~~f~~~yFyS~i~~ 218 (361)
T COG1759 186 GVITE------EDLKNARIEEYVV-GAPFYFHYFYSPIKD 218 (361)
T ss_pred CCcch------hhhhhceeeEEee-ccceeeeeeeccccC
Confidence 55432 2346889999986 667777766655543
No 97
>PRK12458 glutathione synthetase; Provisional
Probab=95.84 E-value=0.039 Score=55.33 Aligned_cols=93 Identities=13% Similarity=0.163 Sum_probs=57.5
Q ss_pred hhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCC-cEEEEEeeecCCCCCCcccCCCcccEEEC-CH
Q 016159 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (394)
Q Consensus 24 ~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~-PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ 101 (394)
+.-+..-++.....+++ +++|+..+..+++++.+..++++ + |+|+||..-.||+ ||.+. +.
T Consensus 122 ~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~~~~~~~~~~~~---~~pvVvKPl~G~gG~-----------gV~~v~~~ 184 (338)
T PRK12458 122 DGLRIANNKLYFQSFPE---EVRPTTHISRNKEYIREFLEESP---GDKMILKPLQGSGGQ-----------GVFLIEKS 184 (338)
T ss_pred HHHHhccCHHHHHhhcc---CCCCCEEEeCCHHHHHHHHHHcC---CCeEEEEECCCCCcc-----------CeEEEecC
Confidence 33344455555555444 68999999999999999988885 4 5999996544433 46555 33
Q ss_pred H--HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC--CeeEEEEE
Q 016159 102 E--EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAI 147 (394)
Q Consensus 102 e--e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~--~~E~ylgi 147 (394)
+ .+.+..+.+.. . ..+++|||++. +.|+.+-+
T Consensus 185 ~~~~~~~ile~~~~-----------~---~~~ivQeyI~~~~~gDiRv~v 220 (338)
T PRK12458 185 AQSNLNQILEFYSG-----------D---GYVIAQEYLPGAEEGDVRILL 220 (338)
T ss_pred ChhhHHHHHHHHhh-----------C---CCEEEEEcccCCCCCCEEEEE
Confidence 3 23333332211 1 36899999973 34554443
No 98
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=95.83 E-value=0.025 Score=55.27 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=61.9
Q ss_pred HHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeee----cCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHh
Q 016159 38 LMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQIL----AGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML 112 (394)
Q Consensus 38 lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~----~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l 112 (394)
...++|+|+|+.+.++|..++ .+.++- +|+++||..- .-+|.| +... |.||.+.++...-
T Consensus 121 ra~elgl~~P~Ty~v~S~~d~--~~~el~---FPvILKP~mgg~~~~~araK----------a~~a~d~ee~k~a~~~a~ 185 (415)
T COG3919 121 RAEELGLPYPKTYLVNSEIDT--LVDELT---FPVILKPGMGGSVHFEARAK----------AFTAADNEEMKLALHRAY 185 (415)
T ss_pred HHHHhCCCCcceEEecchhhh--hhhhee---eeEEecCCCCCcceeehhhh----------eeeccCHHHHHHHHHHHH
Confidence 345689999999999975554 445664 8999999541 112222 3344 8888887766653
Q ss_pred cccccccccCCCCcccceEEEEeeeCCCee--EEEEEEEeccCCceeeeec
Q 016159 113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNE--MYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 113 ~~~l~~~q~~~~g~~v~~vlVee~v~~~~E--~ylgi~~Dr~~~~Pvi~~s 161 (394)
+.- | .+.++||||+++|.| +......|. +.||.+|.
T Consensus 186 eei---------g--pDnvvvQe~IPGGgE~qfsyaAlw~~--g~pvaeft 223 (415)
T COG3919 186 EEI---------G--PDNVVVQEFIPGGGENQFSYAALWDK--GHPVAEFT 223 (415)
T ss_pred Hhc---------C--CCceEEEEecCCCCcccchHHHHHhC--CCchhhhh
Confidence 321 2 268999999998766 334444454 34776664
No 99
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=95.13 E-value=0.06 Score=52.76 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=48.9
Q ss_pred cccccchhhHHhhhhccCCCHHHHHHHHHHcCCCCCCcee-----------eCCHHHHHHHHHHhCCCCCcEEEEEeeec
Q 016159 12 RSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLA-----------VASVDEVKKAIQDAFPDHKELVVKSQILA 80 (394)
Q Consensus 12 ~~~~~~~~~~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~-----------~~s~eea~~~a~~lg~~~~PvVvK~q~~~ 80 (394)
++...+.++|+.....+.=++...++++.++|||+|+... ..+.++..+..+... ..++|+||..
T Consensus 7 ~~~~~~~~~N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~viKP~~-- 82 (285)
T PF14397_consen 7 RNFDYIKRYNPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHA--PDRFVIKPAN-- 82 (285)
T ss_pred HHHHHHHhcCchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhcc--CCcEEEEeCC--
Confidence 4455667776665556666799999999999999999321 235667777776651 1589999965
Q ss_pred CCCCC
Q 016159 81 GGRGL 85 (394)
Q Consensus 81 ggRgK 85 (394)
|..|+
T Consensus 83 G~~G~ 87 (285)
T PF14397_consen 83 GSGGK 87 (285)
T ss_pred CCCcc
Confidence 33355
No 100
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=94.15 E-value=0.27 Score=48.61 Aligned_cols=81 Identities=15% Similarity=0.248 Sum_probs=50.8
Q ss_pred HcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC--CHHHHHHHHHHHhcccccc
Q 016159 41 KYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQILVT 118 (394)
Q Consensus 41 ~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~--s~ee~~~a~~~~l~~~l~~ 118 (394)
.+..++|+..+..+++++.+..++.| |+|+||..-.+ |+ ||... +..++....+ .+..
T Consensus 129 ~~~~~vP~T~v~~~~~~~~~~~~~~g----~vVvKPl~G~~--G~---------gv~~v~~~~~~~~~~~~-~~~~---- 188 (312)
T TIGR01380 129 QFPKVIPPTLVTRDKAEIRAFLAEHG----DIVLKPLDGMG--GE---------GIFRLDPGDPNFNSILE-TMTQ---- 188 (312)
T ss_pred hCcCCCCCEEEeCCHHHHHHHHHHcC----CEEEEECCCCC--Cc---------eEEEEcCCCccHHHHHH-HHHh----
Confidence 34458999999899999999999884 89999976433 43 45433 3323322222 2111
Q ss_pred cccCCCCcccceEEEEeeeCC--CeeEEEEEE
Q 016159 119 KQTGPQGKIVSKVYLCEKLSL--VNEMYFAIM 148 (394)
Q Consensus 119 ~q~~~~g~~v~~vlVee~v~~--~~E~ylgi~ 148 (394)
.+. ..+++|||++. +.++.+-+.
T Consensus 189 -----~~~--~~~~vQ~yI~~~~~~D~Rv~vv 213 (312)
T TIGR01380 189 -----RGR--EPVMAQRYLPEIKEGDKRILLI 213 (312)
T ss_pred -----ccC--CcEEEEeccccccCCCEEEEEE
Confidence 011 47999999973 457666554
No 101
>PRK05246 glutathione synthetase; Provisional
Probab=94.12 E-value=0.26 Score=48.83 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC--CHHHHHHHHHHHhcccccccccC
Q 016159 45 NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQILVTKQTG 122 (394)
Q Consensus 45 pvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~--s~ee~~~a~~~~l~~~l~~~q~~ 122 (394)
++|+..+..+++++.+..++.+ |+|+||..-.+ |+ ||... +..++....+.+ ...
T Consensus 134 ~vP~T~~~~~~~~~~~~~~~~~----~vVlKP~~G~~--G~---------gV~~i~~~~~~~~~~~~~l-~~~------- 190 (316)
T PRK05246 134 LMPPTLVTRDKAEIRAFRAEHG----DIILKPLDGMG--GA---------GIFRVKADDPNLGSILETL-TEH------- 190 (316)
T ss_pred cCCCEEEeCCHHHHHHHHHHCC----CEEEEECCCCC--cc---------ceEEEeCCCccHHHHHHHH-HHc-------
Confidence 7999999999999999998884 89999976443 43 35444 333333222222 110
Q ss_pred CCCcccceEEEEeeeCC--CeeEEEEEE
Q 016159 123 PQGKIVSKVYLCEKLSL--VNEMYFAIM 148 (394)
Q Consensus 123 ~~g~~v~~vlVee~v~~--~~E~ylgi~ 148 (394)
+ -..+++|++++. +.++.+-+.
T Consensus 191 --~--~~~~lvQ~~I~~~~~~D~Rv~vv 214 (316)
T PRK05246 191 --G--REPVMAQRYLPEIKEGDKRILLV 214 (316)
T ss_pred --c--CCeEEEEeccccCCCCCEEEEEE
Confidence 1 147999999964 456665554
No 102
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=93.99 E-value=0.28 Score=42.95 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=56.0
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHH
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNA 370 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a 370 (394)
+|+|++++.-|+++...+|.+...|--..-++-+|..++. .+.+.++.+..||++++|++.+= ++.+. +...++
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv-~~~d~l~~~~~D~~t~~I~ly~E-~~~d~----~~f~~~ 74 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADV-DFADLLEYLAEDPDTRVIVLYLE-GIGDG----RRFLEA 74 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS--HHHHHHHHCT-SS--EEEEEES---S-H----HHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccC-CHHHHHHHHhcCCCCCEEEEEcc-CCCCH----HHHHHH
Confidence 4899999999999999999999999888889999998874 67889999999999999998775 34554 455556
Q ss_pred HHHcC
Q 016159 371 AKQVS 375 (394)
Q Consensus 371 ~~~~~ 375 (394)
.++..
T Consensus 75 ~~~a~ 79 (138)
T PF13607_consen 75 ARRAA 79 (138)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 56553
No 103
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=92.16 E-value=0.47 Score=43.13 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=37.9
Q ss_pred CCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCC
Q 016159 46 VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQ 124 (394)
Q Consensus 46 vp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~ 124 (394)
+|+..+.++.+++.+..++.+ . +|+||....||+|- .++. +.....+..+.+...
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~~---~-~VlKPl~g~gG~gV----------~~i~~~~~n~~~i~e~~~~~---------- 67 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEHG---D-IVLKPLDGMGGRGV----------FRISRDDPNLNSILETLTKN---------- 67 (173)
T ss_dssp S--EEEES-HHHHHHHHHHHS---S-EEEEESS--TTTT-----------EEE-TT-TTHHHHHHHHTTT----------
T ss_pred CcCEEEECCHHHHHHHHHHCC---C-EEEEECCCCCCcCE----------EEEcCCCCCHHHHHHHHHhc----------
Confidence 588999999999999999996 4 99999776665542 3333 433344433333222
Q ss_pred CcccceEEEEeeeC
Q 016159 125 GKIVSKVYLCEKLS 138 (394)
Q Consensus 125 g~~v~~vlVee~v~ 138 (394)
+ -..+++|+|++
T Consensus 68 ~--~~~~mvQ~flp 79 (173)
T PF02955_consen 68 G--ERPVMVQPFLP 79 (173)
T ss_dssp T--TS-EEEEE--G
T ss_pred C--CccEEEEeccc
Confidence 1 15799999997
No 104
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=91.90 E-value=1.3 Score=49.48 Aligned_cols=87 Identities=13% Similarity=0.230 Sum_probs=66.4
Q ss_pred HHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcc
Q 016159 36 AELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQ 114 (394)
Q Consensus 36 K~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~ 114 (394)
-++|.+.||..|+|.-.++.+||...|++.| ||+.+.|...-. |- ...++ +.++++...++.-.-
T Consensus 1038 S~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~Vg---YP~lvRPSYVLS--Ga---------AMnv~~~~~dl~~~L~~A~~v 1103 (1435)
T KOG0370|consen 1038 SRMLDSIGVDQPAWKELTSLEEAKKFAEKVG---YPVLVRPSYVLS--GA---------AMNVVYSESDLKSYLEQASAV 1103 (1435)
T ss_pred HHHHHHcCCCchhhhhhccHHHHHHHHHhcC---CceEecccceec--ch---------hhhhhhcHHHHHHHHHHHhhc
Confidence 4688899999999999999999999999999 999999954321 22 24456 888888776665321
Q ss_pred cccccccCCCCcccceEEEEeeeCCCeeEEEEE
Q 016159 115 ILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147 (394)
Q Consensus 115 ~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi 147 (394)
. +. +.|.+.+|+...+|+-+-.
T Consensus 1104 s--------~d---hPVVisKfie~AkEidvDA 1125 (1435)
T KOG0370|consen 1104 S--------PD---HPVVISKFIEGAKEIDVDA 1125 (1435)
T ss_pred C--------CC---CCEEhHHhhcccceechhh
Confidence 1 11 5789999999889976643
No 105
>PRK06091 membrane protein FdrA; Validated
Probab=91.00 E-value=1.5 Score=46.77 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=67.3
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCccceeecCCC-----CCHHHHHHHHHHHhcCCCccEEEEEc-cCCCCChHHHH
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN-----ASEGQVVEAFKILTSDEKVKAILVNI-FGGIMKCDVIA 364 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~-----a~~~~~~~a~~~~l~~~~v~~i~vni-~ggi~~~d~vA 364 (394)
+|+||+++--|+++...++++...|.-...++-+||. +..-.+..+++.+..||++++|.+.+ + +...+.
T Consensus 193 ~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kp----paE~v~ 268 (555)
T PRK06091 193 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKP----PAEAVR 268 (555)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEec----CchHHH
Confidence 7999999999999999999999999999999999988 32345788999999999999999755 2 235666
Q ss_pred HHHHHHHHHc
Q 016159 365 SGIVNAAKQV 374 (394)
Q Consensus 365 ~gii~a~~~~ 374 (394)
+.++++++..
T Consensus 269 ~~fl~aar~~ 278 (555)
T PRK06091 269 LKIINAMKAT 278 (555)
T ss_pred HHHHHHHhhC
Confidence 7888888876
No 106
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=90.10 E-value=1.2 Score=44.32 Aligned_cols=66 Identities=15% Similarity=0.280 Sum_probs=58.6
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCC-CHHHHHHHHHHHhcCCCccEEEEEccC
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNA-SEGQVVEAFKILTSDEKVKAILVNIFG 355 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a-~~~~~~~a~~~~l~~~~v~~i~vni~g 355 (394)
.+|+||+++--|+++...++.+...|.--.-++-+||++ ..-.+.+.++.+.+||+.++|++..=+
T Consensus 168 ~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~ 234 (317)
T PTZ00187 168 KKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEI 234 (317)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEec
Confidence 479999999999999999999999998889999999998 335688899999999999999974443
No 107
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=89.82 E-value=1.4 Score=43.21 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=58.8
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCC
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGG 356 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~gg 356 (394)
.+|+|++++-.|+++...+|+....|--..-++-+|+.+. .-.+.+.++.+.+||++++|++.+=++
T Consensus 142 ~~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~ 209 (286)
T TIGR01019 142 KPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIG 209 (286)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecC
Confidence 3799999999999999999999999988889999999964 246778899999999999999866543
No 108
>PLN02522 ATP citrate (pro-S)-lyase
Probab=89.80 E-value=1.3 Score=47.97 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=67.8
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii 368 (394)
.+|+||+++-.|+++...+|.+...|---.-++-+||++. ...+.+.++.+.+||++++|++..==|+.+-... +
T Consensus 166 ~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f----~ 241 (608)
T PLN02522 166 RPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSL----V 241 (608)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHH----H
Confidence 4799999999999999999999999988888999999986 3567889999999999999997544133444444 4
Q ss_pred HHHHHcCC-cceEE
Q 016159 369 NAAKQVSA-LDCFG 381 (394)
Q Consensus 369 ~a~~~~~~-~~~~~ 381 (394)
+++++... |++..
T Consensus 242 ea~~~a~~~KPVVa 255 (608)
T PLN02522 242 EALKQGKVSKPVVA 255 (608)
T ss_pred HHHHHhcCCCCEEE
Confidence 45555433 33443
No 109
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=88.84 E-value=1.4 Score=43.52 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=58.8
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCC--CCHHHHHHHHHHHhcCCCccEEEEEccCC
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN--ASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~--a~~~~~~~a~~~~l~~~~v~~i~vni~gg 356 (394)
.+|+|++++--|++++..+|+....|--..-++-+|+. ++ -.+...++.+.+||++++|++.+=+|
T Consensus 149 ~~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~ad-v~~~d~L~yl~~Dp~T~~I~ly~E~~ 216 (300)
T PLN00125 149 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNG-TNFVDCLEKFVKDPQTEGIILIGEIG 216 (300)
T ss_pred CCCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCC-CCHHHHHHHHhhCCCCcEEEEEeccC
Confidence 37999999999999999999999999889999999999 77 35677899999999999999877654
No 110
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=88.58 E-value=1.9 Score=42.46 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=58.4
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCH-HHHHHHHHHHhcCCCccEEEEEccCC
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE-GQVVEAFKILTSDEKVKAILVNIFGG 356 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~-~~~~~a~~~~l~~~~v~~i~vni~gg 356 (394)
.+|+|++++-.|+++...+|+....|--..-++-+|+.++. -.....++.+..||++++|++.+=+.
T Consensus 144 ~~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~ 211 (291)
T PRK05678 144 KKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIG 211 (291)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecC
Confidence 37999999999999999999999999888999999998542 45667899999999999999877643
No 111
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=86.69 E-value=2.6 Score=42.19 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=63.3
Q ss_pred HHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEECCHHHHHHHHHHHhccccccc
Q 016159 40 AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTK 119 (394)
Q Consensus 40 ~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~s~ee~~~a~~~~l~~~l~~~ 119 (394)
.+-.=-|.++..+.|.++|..+++.+= ...||=+|+-...||||. ..+.|.+++..+...+-...+
T Consensus 108 ~~~~~~vL~G~tvFs~~DA~~A~~~LL-~~G~VRlKp~~a~gG~GQ----------~vv~~~~~Ld~~L~~~~~~~l--- 173 (355)
T PF11379_consen 108 ERVRDAVLPGYTVFSREDARRAARRLL-RDGPVRLKPVHATGGRGQ----------QVVADADELDAALAALDDAEL--- 173 (355)
T ss_pred HHHhhhccCCccccCHHHHHHHHHHHh-ccCCeeeccCcccCCCCc----------eEecCHHHHHHHHHcCCHHHH---
Confidence 333334678888999999999999873 447999999877787764 433388999888887754443
Q ss_pred ccCCCCcccceEEEEeeeCCCeeEEEEEEE
Q 016159 120 QTGPQGKIVSKVYLCEKLSLVNEMYFAIML 149 (394)
Q Consensus 120 q~~~~g~~v~~vlVee~v~~~~E~ylgi~~ 149 (394)
.-.++.+|+-+..-.-+.||-.+
T Consensus 174 -------~~~GlVLE~~L~~~~T~SVGqv~ 196 (355)
T PF11379_consen 174 -------ARHGLVLEEDLEEVVTYSVGQVR 196 (355)
T ss_pred -------HhCCEEEecccCCCceeeEEEEE
Confidence 12578888888655666666543
No 112
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=85.95 E-value=3.2 Score=41.35 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCc-ceEEeecce
Q 016159 327 NASEGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSAL-DCFGFHSNY 386 (394)
Q Consensus 327 ~a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~-~~~~~~~~~ 386 (394)
..+.+.+.+.++.+..||++|+|++ |.|||.+-..+ -|.++++++.-+ ++..+=++|
T Consensus 79 ~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~---~i~~~l~~l~~~~PV~v~v~~~ 138 (317)
T COG0616 79 FIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASE---LIARALKRLRAKKPVVVSVGGY 138 (317)
T ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHH---HHHHHHHHHhhcCCEEEEECCe
Confidence 6678899999999999999999777 99999876443 333333333322 444444444
No 113
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=85.55 E-value=3.9 Score=42.62 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=62.3
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHH
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|+|++++-.|+++...+|.....|--..-++-+|+.++ -.+...++.+..||++++|++.+= ++.+.....
T Consensus 149 ~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d-~~~~d~l~~l~~D~~t~~I~ly~E-~~~~~~~f~ 221 (447)
T TIGR02717 149 KKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKAD-IDESDLLEYLADDPDTKVILLYLE-GIKDGRKFL 221 (447)
T ss_pred CCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhh-CCHHHHHHHHhhCCCCCEEEEEec-CCCCHHHHH
Confidence 3699999999999999999999999999999999999987 467789999999999999998765 355554433
No 114
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=85.54 E-value=2 Score=28.86 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD 64 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~ 64 (394)
-++.+-++.|.++||++|+.. .+.|++.+.+++
T Consensus 4 Ws~~~L~~wL~~~gi~~~~~~--~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVPKSA--KTRDELLKLAKK 36 (38)
T ss_pred CCHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHH
Confidence 456788999999999999987 788999888775
No 115
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=85.39 E-value=3.6 Score=40.39 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=58.8
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++....+.. -...+++..+|..+...+-.-++.+.+.-+++++-+++ .+..++|| ...|.+|
T Consensus 177 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nD~~A 249 (343)
T PRK10727 177 TRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVA-------CYNDSMA 249 (343)
T ss_pred ccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEE-------EcCcHHH
Confidence 4788875332211 22457777777654322222355565665666665554 56788988 4568999
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
-|++++++++++++ +.+|-++.+|
T Consensus 250 ~g~~~al~~~G~~vP~disVigfD~~~~~ 278 (343)
T PRK10727 250 AGAMGVLNDNGIDVPGEISLIGFDDVLVS 278 (343)
T ss_pred HHHHHHHHHcCCCCCcceeEEeecCcHHH
Confidence 99999999999864 7888877654
No 116
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=83.43 E-value=2.7 Score=41.96 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=23.6
Q ss_pred ceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 129 SKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 129 ~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
.+++.|||++ |+-+.+++..+.+.- -++.+.
T Consensus 176 ~~~i~Qefi~-G~p~Svs~is~g~~a-~~la~N 206 (389)
T COG2232 176 PGFIFQEFIE-GRPVSVSFISNGSDA-LTLAVN 206 (389)
T ss_pred cceehhhhcC-CceeEEEEEecCcce-EEEEEe
Confidence 5899999998 888899998887653 444444
No 117
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.11 E-value=4 Score=41.66 Aligned_cols=63 Identities=29% Similarity=0.456 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCccceeecC---CCCCHHHHHHHHHHHhcCCCccEEEE-EccCCCCChHHHHHHHHHHHHHcCC
Q 016159 304 AMATMDIIKLHGGTPANFLDVG---GNASEGQVVEAFKILTSDEKVKAILV-NIFGGIMKCDVIASGIVNAAKQVSA 376 (394)
Q Consensus 304 ~m~t~D~i~~~gg~~aNflD~g---G~a~~~~~~~a~~~~l~~~~v~~i~v-ni~ggi~~~d~vA~gii~a~~~~~~ 376 (394)
=++|.-.+...|.+|- |+|+= .+-+++.+.+++. |+.|+|+. |++|-. ||+ +.|.+..+++++
T Consensus 84 fvATan~i~~~Ga~PV-FvDid~~T~nid~~~ie~aIt-----~~tKAIipVhl~G~~--~dm--~~i~~la~~~~l 150 (374)
T COG0399 84 FVATANAVLLVGAKPV-FVDIDPDTLNIDPDLIEAAIT-----PRTKAIIPVHLAGQP--CDM--DAIMALAKRHGL 150 (374)
T ss_pred hHHHHHHHHHcCCeEE-EEecCCcccCCCHHHHHHHcc-----cCCeEEEEehhccCC--CCH--HHHHHHHHHcCC
Confidence 3578888888898885 88876 6678888888764 44889776 999854 555 556666666554
No 118
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=82.88 E-value=7.7 Score=37.97 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=61.2
Q ss_pred EEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEE-EccCCCCChHHHH
Q 016159 287 YIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILV-NIFGGIMKCDVIA 364 (394)
Q Consensus 287 y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~v-ni~ggi~~~d~vA 364 (394)
++..+|+||+++--+.|+==..-.+...|.=-.--+-+||++- ...+..+|+++..||+.++|++ -=.|| +.++.|
T Consensus 141 ~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG--~aEe~A 218 (293)
T COG0074 141 NIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGG--PAEEEA 218 (293)
T ss_pred hhccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCC--cHHHHH
Confidence 4556899999999999988888888888876666778888875 4567789999999999999774 22333 245555
Q ss_pred HHHHHH
Q 016159 365 SGIVNA 370 (394)
Q Consensus 365 ~gii~a 370 (394)
.-.|+.
T Consensus 219 A~~i~~ 224 (293)
T COG0074 219 AEYIKA 224 (293)
T ss_pred HHHHHH
Confidence 444444
No 119
>PRK09526 lacI lac repressor; Reviewed
Probab=82.78 E-value=9.2 Score=37.27 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=57.0
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++.+-.+.. ....+.+..+|.++... ..++-+.+.-+++++-++ ..+.+++|| +..|.+|
T Consensus 182 ~~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A 252 (342)
T PRK09526 182 QRIALLAGPESSVSARLRLAGWLEYLTDYQLQPIAV--REGDWSAMSGYQQTLQMLREGPVPSAIL-------VANDQMA 252 (342)
T ss_pred CeEEEEeCCCccccHHHHHHHHHHHHHHcCCCcceE--EeCCCchHHHHHHHHHHhcCCCCCcEEE-------EcCcHHH
Confidence 4888886433221 23456777777654322 224444444444444444 457789999 4568899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceEEE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYFCL 389 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~~~ 389 (394)
.|++++++++++++ +.+|-++.+|.
T Consensus 253 ~g~~~al~~~g~~vP~disvig~d~~~~~~ 282 (342)
T PRK09526 253 LGVLRALHESGLRVPGQISVIGYDDTEDSS 282 (342)
T ss_pred HHHHHHHHHcCCCCCCceEEEeeCCCchhc
Confidence 99999999999864 78887776554
No 120
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=82.73 E-value=47 Score=31.97 Aligned_cols=188 Identities=14% Similarity=0.214 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHcC-CC--CCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCccc-CCCcccEEE------
Q 016159 29 NIHEYQGAELMAKYG-IN--VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK-SGLKGGVHI------ 98 (394)
Q Consensus 29 ~L~E~~aK~lL~~~G-Ip--vp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~-~~~~GGV~l------ 98 (394)
.+++++.-++|..+. +. .|+..+.++++++.+...+. .-|.|||.. |.+|+++.. .-..++..+
T Consensus 16 ~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y----~~vylKP~~--Gs~G~gI~ri~~~~~~~~~~~~~~~ 89 (262)
T PF14398_consen 16 FFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKY----KSVYLKPDN--GSKGKGIIRIEKKGGGYRIQYRNKK 89 (262)
T ss_pred CCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHC----CEEEEEeCC--CCCCccEEEEEEeCCEEEEEEccCC
Confidence 366777778888764 33 68998999999999998887 378999976 555666531 000012222
Q ss_pred ------C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC------CeeEEEEEEEeccCCceeeeeccCCC
Q 016159 99 ------V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL------VNEMYFAIMLDRKTAGPIIIGCSKGG 165 (394)
Q Consensus 99 ------~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~------~~E~ylgi~~Dr~~~~Pvi~~s~~GG 165 (394)
. +.+++.....+.++. +.++||+.++. ...+.+-+..|... ..-+.|
T Consensus 90 ~~~~~~~~~~~~l~~~l~~~~~~--------------~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G--~W~vtg---- 149 (262)
T PF14398_consen 90 KNVRRTFSSLEELEQFLKELLGK--------------RRYIIQQGIPLATYDGRPFDFRVLVQKNGSG--KWQVTG---- 149 (262)
T ss_pred ceeEEEeCCHHHHHHHHHHhcCC--------------CcEEEeCCccccccCCCeEEEEEEEEECCCC--CEEEEE----
Confidence 2 567777666665433 35666666532 23455555554432 222222
Q ss_pred cceeeccccCCCeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcC-C--cceeeecceeeccCC
Q 016159 166 TSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES-D--CTLLEINPLAETSGK 242 (394)
Q Consensus 166 v~iE~~~~~~pd~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~-d--~~~lEINPLvv~~~G 242 (394)
+-+-. + .|+.+.+ +...|=+.....+++....-.....+.+.++...+.+...+. + +-++=|+ +.++.+|
T Consensus 150 ~~~Rv-a--~~~~ivT---N~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiD-l~iD~~g 222 (262)
T PF14398_consen 150 IVARV-A--KPGSIVT---NLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGID-LGIDKNG 222 (262)
T ss_pred EEEEE-c--CCCCcee---ccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEE-EEEcCCC
Confidence 00000 0 0111111 111111111111222211111233455556666666655443 3 3466666 7888899
Q ss_pred cEEEeec
Q 016159 243 QLVAADA 249 (394)
Q Consensus 243 ~~~alDa 249 (394)
+++.+.+
T Consensus 223 ~iWliEv 229 (262)
T PF14398_consen 223 KIWLIEV 229 (262)
T ss_pred CEEEEEE
Confidence 9888876
No 121
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=80.76 E-value=7.9 Score=35.88 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 327 NASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 327 ~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
..+.+...++++-++. .|+.++|+ ...|.+|.++++++++.+.++ +.+|.++.++
T Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~~~~~~l~~~g~~ip~di~v~g~d~~~~~ 216 (260)
T cd06286 156 CFTIEDGERIGHQLLKMKDRPDAIF-------TGSDEVAAGIITEAKKQGIRVPEDLAIIGFDNQPIS 216 (260)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCEEE-------EcchHHHHHHHHHHHHcCCCCCcceEEEeecCcccc
Confidence 3344555566666665 47888888 445678999999999999753 8888887654
No 122
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=80.74 E-value=5.9 Score=36.99 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=46.3
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
.+.+..+|.+.-...-+.++.+.+..+++++-++ ++|.+++|| +..|.+|.|+++++++.+.++ +++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~ip~di~v~g 211 (268)
T cd06270 139 RDALAEAGIALDESLIIEGDFTEEGGYAAMQELLARGAPFTAVF-------CANDEMAAGAISALREHGISVPQDVSIIG 211 (268)
T ss_pred HHHHHHcCCCCCcceEEECCCCHHHHHHHHHHHHhCCCCCCEEE-------EcCcHHHHHHHHHHHHcCCCCCCceeEEE
Confidence 3455555544322222344555566666665555 567899999 445789999999999998753 677
Q ss_pred eecceE
Q 016159 382 FHSNYF 387 (394)
Q Consensus 382 ~~~~~~ 387 (394)
|-++.+
T Consensus 212 ~d~~~~ 217 (268)
T cd06270 212 FDDVLL 217 (268)
T ss_pred ecCchH
Confidence 665543
No 123
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=80.71 E-value=6.2 Score=35.46 Aligned_cols=62 Identities=29% Similarity=0.292 Sum_probs=40.3
Q ss_pred ecCCCCCHHHHHHHHHHHhcCCCccEEEE--EccCCCCC-hHHHHHHHHHHHHHcCCcceEEeecc
Q 016159 323 DVGGNASEGQVVEAFKILTSDEKVKAILV--NIFGGIMK-CDVIASGIVNAAKQVSALDCFGFHSN 385 (394)
Q Consensus 323 D~gG~a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~-~d~vA~gii~a~~~~~~~~~~~~~~~ 385 (394)
|..|..+.+.+.++++-+.+||++++|++ |.+||-.. ..++. .+++.+++.+-.+.--+||.
T Consensus 17 ~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~-~~i~~~~~~~kpVia~v~G~ 81 (177)
T cd07014 17 DTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIR-AELAAARAAGKPVVASGGGN 81 (177)
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHH-HHHHHHHhCCCCEEEEECCc
Confidence 66778889999999999999999999998 54555322 22222 23445554433334445654
No 124
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=80.00 E-value=6.1 Score=37.16 Aligned_cols=75 Identities=20% Similarity=0.122 Sum_probs=48.3
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
.+++..+|.+.-...-..++.+.+..++++.-+++ .+.+++|+ ...|.+|-|+++++++.++++ ..+
T Consensus 142 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~vP~di~vvg 214 (269)
T cd06297 142 QQALKDAGRPFSPDLLAITDHSEEGGRLAMRHLLEKASPPLAVF-------ASADQQALGALQEAVELGLTVGEDVRVVG 214 (269)
T ss_pred HHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHcCCCCCcEEE-------EcCcHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 34555555432211112244445555566665554 56788998 556889999999999998753 888
Q ss_pred eecceEEE
Q 016159 382 FHSNYFCL 389 (394)
Q Consensus 382 ~~~~~~~~ 389 (394)
|-++..+.
T Consensus 215 ~d~~~~~~ 222 (269)
T cd06297 215 FDDHPFAR 222 (269)
T ss_pred ECCchhhc
Confidence 88876553
No 125
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=79.97 E-value=7.3 Score=36.06 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=47.3
Q ss_pred HHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEe
Q 016159 309 DIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGF 382 (394)
Q Consensus 309 D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~ 382 (394)
+.+..+|..+-.+....+..+.+..+++++-++ +.|++++||. ..|.+|.++++++++.+.++ ..+|
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~~~~~~l~~~g~~~p~di~vig~ 212 (268)
T cd01575 140 AALRAAGLDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVFC-------SNDDLALGALFECQRRGISVPEDIAIAGF 212 (268)
T ss_pred HHHHHcCCCCCceeEeccCCCHHHHHHHHHHHHhCCCCCCEEEE-------CCcHHHHHHHHHHHHhCCCCCcceEEEec
Confidence 345555543333333334455566666665555 5688999993 44678999999999998653 7787
Q ss_pred ecceEE
Q 016159 383 HSNYFC 388 (394)
Q Consensus 383 ~~~~~~ 388 (394)
-++.++
T Consensus 213 d~~~~~ 218 (268)
T cd01575 213 GDLEIA 218 (268)
T ss_pred CCchhh
Confidence 777654
No 126
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=77.40 E-value=18 Score=33.45 Aligned_cols=88 Identities=20% Similarity=0.126 Sum_probs=53.8
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++.+..+.. -...+.+..+|.+..-..-..+..+.+..++++ +++.+.|++++|| ...|.+|
T Consensus 117 ~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a 189 (269)
T cd06288 117 RRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIF-------CGNDRMA 189 (269)
T ss_pred ceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEE-------EeCcHHH
Confidence 4788886554422 123556666665432222222333444444444 4455667899998 4567889
Q ss_pred HHHHHHHHHcCCcc-----eEEeecce
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
.++++++++.++++ .+++-++-
T Consensus 190 ~~~~~~l~~~g~~vp~di~v~g~d~~~ 216 (269)
T cd06288 190 MGAYQALLERGLRIPQDVSVVGFDNQE 216 (269)
T ss_pred HHHHHHHHHcCCCCcccceEEeeCCch
Confidence 99999999999763 77777663
No 127
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=77.23 E-value=16 Score=33.82 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=51.4
Q ss_pred CceeEEecChh-HH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAG-LA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaG-l~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++...-+ .. -...+.+..+|.+..-..-+.++-+.+..+++++-+++.+.+++|+ +..|..|
T Consensus 117 ~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~-------~~~d~~a 189 (268)
T cd06298 117 KKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEELLEDGKPTAAF-------VTDDELA 189 (268)
T ss_pred ceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEE-------EcCcHHH
Confidence 57888763322 11 2235677777654322111123344555666666555532289999 3467789
Q ss_pred HHHHHHHHHcCCcc-----eEEeec
Q 016159 365 SGIVNAAKQVSALD-----CFGFHS 384 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~ 384 (394)
.++++++++.++++ +++|-+
T Consensus 190 ~~~~~~l~~~g~~vp~di~vvg~d~ 214 (268)
T cd06298 190 IGILNAAQDAGLKVPEDFEIIGFNN 214 (268)
T ss_pred HHHHHHHHHcCCCCccceEEEeecc
Confidence 99999999998763 666654
No 128
>PRK05849 hypothetical protein; Provisional
Probab=76.54 E-value=1.4e+02 Score=33.69 Aligned_cols=190 Identities=14% Similarity=0.093 Sum_probs=94.9
Q ss_pred CHHHHHHHHHH--cCCCCCCceeeCC---HHHHHHHHHHhC--CCCCcEEEEEeeecCCCCCCcccCCCccc--EEEC--
Q 016159 31 HEYQGAELMAK--YGINVPKGLAVAS---VDEVKKAIQDAF--PDHKELVVKSQILAGGRGLGTFKSGLKGG--VHIV-- 99 (394)
Q Consensus 31 ~E~~aK~lL~~--~GIpvp~~~~~~s---~eea~~~a~~lg--~~~~PvVvK~q~~~ggRgK~~~~~~~~GG--V~l~-- 99 (394)
++.+.-.-|+. .|.++|+..+++- .++...+.+.+. .+..||+|....... .+.. .+.+|- -.++
T Consensus 10 ~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~E-D~~~---~S~AGq~~S~lnV~ 85 (783)
T PRK05849 10 TKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSE-DSSS---SSNAGAFLSILNVN 85 (783)
T ss_pred hHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCccc-CCCc---CccccCceeEecCC
Confidence 34455556677 7899999988754 222222333322 023589998743211 1110 112332 2233
Q ss_pred --CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeee--ecc-CCCcceeecccc
Q 016159 100 --KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIII--GCS-KGGTSIEDLAEK 174 (394)
Q Consensus 100 --s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~--~s~-~GGv~iE~~~~~ 174 (394)
+.+++.+++++.+...- + ..-..|+||+|+....=-=|..++|+..+.|-.+ +.. ..|-+|-. ...
T Consensus 86 ~~~~~~L~~AI~~V~aS~~-~-------~~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVs-G~~ 156 (783)
T PRK05849 86 ADSKDQLLKAIEKVIASYG-T-------SKDDEILVQPMLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTS-GSG 156 (783)
T ss_pred CCcHHHHHHHHHHHHHhhC-C-------CCCCeEEEEeCccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceec-ccC
Confidence 23488888888876531 0 1115799999996212223778888887644333 321 11222211 111
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceee
Q 016159 175 YPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLN 252 (394)
Q Consensus 175 ~pd~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ 252 (394)
+|+..... .. .+ --+.+....+|+++..+|-+.|- .+..-+| ..++++|+++.|-+|-.
T Consensus 157 t~~~~~~~-~~-----------~~---~~l~p~~~~~L~~la~~LE~~fg-~dpqDIE---faid~~g~L~lLQ~RPi 215 (783)
T PRK05849 157 GSATTVYH-YR-----------DA---LVFKPPRLKKLIELIRELEALFG-CDFLDIE---FAIDEKEELYILQVRPI 215 (783)
T ss_pred CCCceeee-cc-----------cc---ccCCHHHHHHHHHHHHHHHHHcC-CCCeeeE---EEEccCCEEEEEEccCC
Confidence 22221100 00 00 01335556667777777666652 1222333 45566778888887744
No 129
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.06 E-value=14 Score=34.91 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHH-hcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 329 SEGQVVEAFKIL-TSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 329 ~~~~~~~a~~~~-l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
+.+..++.++-+ .++|.+++|+ +..|.+|.++++++++.++++ .++|-++.+|
T Consensus 178 ~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~gv~~al~~~g~~ip~di~vig~d~~~~~ 236 (283)
T cd06279 178 DRASGEEAARELLDASPRPTAIL-------CMSDVLALGALQVARELGLRVPEDLSVVGFDGIPEA 236 (283)
T ss_pred chHHHHHHHHHHHcCCCCCcEEE-------ECCcHHHHHHHHHHHHcCCCCCCceEEeeeCCCcce
Confidence 345555555444 4567889988 556789999999999998753 8899888887
No 130
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.34 E-value=12 Score=34.65 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=46.2
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
.|.+..+|-...+..-..++.+.+..++++. ++.+.|++++|| +..|.+|.++++++++.+.++ +++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~iP~dv~vig 217 (270)
T cd06294 145 KQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAIV-------ATDDLLALGVLKVLNELGLKVPEDLSIIG 217 (270)
T ss_pred HHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCEEE-------ECChHHHHHHHHHHHHcCCCCCcceEEEe
Confidence 3555555533222222233444445555554 444567899998 334678999999999999852 788
Q ss_pred eecceEE
Q 016159 382 FHSNYFC 388 (394)
Q Consensus 382 ~~~~~~~ 388 (394)
+.++.++
T Consensus 218 ~d~~~~~ 224 (270)
T cd06294 218 FNNSILS 224 (270)
T ss_pred eCChhhh
Confidence 8877654
No 131
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=75.20 E-value=21 Score=33.11 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=53.3
Q ss_pred CceeEEecChh--H-----HHHHHHHHHHcCCCccceeecCCCCCHHH-HHHHHHHHhcCCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAG--L-----AMATMDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaG--l-----~m~t~D~i~~~gg~~aNflD~gG~a~~~~-~~~a~~~~l~~~~v~~i~vni~ggi~~~d~v 363 (394)
++|+++.+... . .-...+.+..+|-+.. ..+..++.+.+. +..+-+++.+.|.+++|+ ...|..
T Consensus 113 ~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~ 184 (265)
T cd06291 113 KHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVR-IIEIQENFDDAEKKEEIKELLEEYPDIDGIF-------ASNDLT 184 (265)
T ss_pred cEEEEEccCcccccchHHHHHHHHHHHHHcCCCCC-hheeeccccchHHHHHHHHHHhCCCCCCEEE-------ECChHH
Confidence 36776654333 1 1234677777765432 344444433333 334445566678889988 345778
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecce
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
|.++++++++.+.++ +++|-++.
T Consensus 185 a~~~~~al~~~g~~vp~di~v~g~d~~~ 212 (265)
T cd06291 185 AILVLKEAQQRGIRVPEDLQIIGYDGTK 212 (265)
T ss_pred HHHHHHHHHHcCCCCCcceEEeccCChH
Confidence 999999999998762 67776554
No 132
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=74.59 E-value=11 Score=36.39 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=56.3
Q ss_pred CceeEEecChhH------HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGL------AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl------~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++...... --...+++..+|......+.+.++-+.+..+++++-++ ..+.+++|| ...|.+|
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A 247 (327)
T PRK10423 175 TRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMQQLLALPLRPQAVF-------TGNDAMA 247 (327)
T ss_pred CeEEEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHhcCCCCCCEEE-------EcCcHHH
Confidence 377776433221 11235677777765433233344445455555555555 456788988 3457899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
.|++++++++++++ +++|-++.+|
T Consensus 248 ~g~~~~l~~~g~~vP~dvsvigfd~~~~~ 276 (327)
T PRK10423 248 VGVYQALYQAGLSVPQDIAVIGYDDIELA 276 (327)
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCChhHH
Confidence 99999999999864 7888776554
No 133
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.33 E-value=17 Score=34.49 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=44.0
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
..+++..+|..+- ...+.+..+.+.-+++++-+++ .|..++|| +..|.+|.|+++++++.++++
T Consensus 140 f~~a~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A~gvl~al~~~gl~v 204 (269)
T cd06287 140 YRAFAAEHGMPPV-VLRVDEAGGEEAGYAACAQLLAQHPDLDALC-------VPVDAFAVGAVRAATELGRAV 204 (269)
T ss_pred HHHHHHHcCCCcc-eeEecCCCChHHHHHHHHHHHhCCCCCCEEE-------EcCcHHHHHHHHHHHHcCCCC
Confidence 4566666766543 3444455555555566665554 46788999 447899999999999999875
No 134
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=74.06 E-value=15 Score=35.04 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=54.7
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++..-.... ....+.+..+|.+.-....+.++-+.+..++.++-+++ .+..++|| +.+|.+|
T Consensus 153 ~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a 225 (309)
T PRK11041 153 KRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTAVF-------CHSDVMA 225 (309)
T ss_pred ceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCEEE-------EcCcHHH
Confidence 5888886332221 12245666665432221222344555666666655554 45688988 5578899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
.|+++++++.++++ +++|-++..
T Consensus 226 ~gv~~al~~~g~~ip~di~vvg~D~~~~ 253 (309)
T PRK11041 226 LGALSQAKRMGLRVPQDLSIIGFDDIDL 253 (309)
T ss_pred HHHHHHHHHcCCCCCcceEEEEeCCchh
Confidence 99999999999752 677766543
No 135
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.04 E-value=14 Score=34.46 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=55.1
Q ss_pred CceeEEecChhH------HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGL------AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl------~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++....+. .....|.+..+|-... .+...++.+.+..+++++ ++.+.|+.++|| +..|.+|
T Consensus 126 ~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a 197 (277)
T cd06319 126 GKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLA-GIRQQKDFSYQETFDYTNDLLTANPDIRAIW-------LQGSDRY 197 (277)
T ss_pred CcEEEEeccCCCccHHHHHHHHHHHHHhcCCceE-eeccCCCCCHHHHHHHHHHHHHhCCCCCEEE-------ECCCccc
Confidence 577777532211 2334677777764422 333445666666555554 444678889988 3456778
Q ss_pred HHHHHHHHHcCCcc---eEEeecce
Q 016159 365 SGIVNAAKQVSALD---CFGFHSNY 386 (394)
Q Consensus 365 ~gii~a~~~~~~~~---~~~~~~~~ 386 (394)
.|+++++++.+++. +++|-++.
T Consensus 198 ~g~~~al~~~g~~~di~vvg~d~~~ 222 (277)
T cd06319 198 QGALDAIATAGKTGKVLLICFDAEP 222 (277)
T ss_pred hHHHHHHHHcCCCCCEEEEEcCCCH
Confidence 99999999999863 66776654
No 136
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=73.37 E-value=13 Score=36.10 Aligned_cols=89 Identities=18% Similarity=0.108 Sum_probs=55.8
Q ss_pred CceeEEecChhH-------HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGL-------AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl-------~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|++++..... -....+.+..+|..+-...-..++-+.+.-+++++-+++. +.++|| ...|.+|
T Consensus 177 ~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~p~ai~-------~~~d~~A 248 (329)
T TIGR01481 177 KSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGS-LPTAVF-------VASDEMA 248 (329)
T ss_pred CeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCC-CCCEEE-------EcCcHHH
Confidence 378877522111 1224567777776543211123444555566666666653 457888 3468899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
.|+++++++.++++ +.+|-++.+|
T Consensus 249 ~g~~~al~~~g~~vP~dvsvvgfd~~~~~ 277 (329)
T TIGR01481 249 AGILNAAMDAGIKVPEDLEVITSNNTRLT 277 (329)
T ss_pred HHHHHHHHHcCCCCCCceEEEeeCCchHH
Confidence 99999999999864 7888877654
No 137
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=73.35 E-value=13 Score=36.04 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=48.8
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eE
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CF 380 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~ 380 (394)
..+++..+|..+...+ +.+..+.+.-+++++-++ +.|++++|| ...|.+|-|+++++++.++++ +.
T Consensus 201 f~~al~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nD~~A~g~~~al~~~g~~vP~disvi 272 (331)
T PRK14987 201 YEQAMLDAGLVPYSVM-VEQSSSYSSGIELIRQARREYPQLDGVF-------CTNDDLAVGAAFECQRLGLKVPDDMAIA 272 (331)
T ss_pred HHHHHHHcCCCcccee-ecCCCChhhHHHHHHHHHhcCCCCCEEE-------ECCcHHHHHHHHHHHHcCCCCCCccEEE
Confidence 4577777775432222 223334444455555554 457789999 456889999999999999874 78
Q ss_pred EeecceEE
Q 016159 381 GFHSNYFC 388 (394)
Q Consensus 381 ~~~~~~~~ 388 (394)
+|-++.+|
T Consensus 273 gfD~~~~~ 280 (331)
T PRK14987 273 GFHGHDIG 280 (331)
T ss_pred eeCCchhh
Confidence 88776544
No 138
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=72.86 E-value=22 Score=32.98 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=43.8
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcC-CCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSD-EKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CF 380 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~-~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~ 380 (394)
.+.+..+|.......-..++.+.+.-+++++ ++.+. |..++|+ ...|.+|.|+++++++.++++ ++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-------~~~d~~A~g~~~al~~~g~~ip~dv~v~ 211 (264)
T cd06274 139 RQALADAGLPVQPDWIYAEGYSPESGYQLMAELLARLGRLPRALF-------TTSYTLLEGVLRFLRERPGLAPSDLRIA 211 (264)
T ss_pred HHHHHHcCCCCCcceeecCCCChHHHHHHHHHHHccCCCCCcEEE-------EcChHHHHHHHHHHHHcCCCCCcceEEE
Confidence 4556666543222212223344454444444 44454 7789998 446889999999999999862 67
Q ss_pred Eeecc
Q 016159 381 GFHSN 385 (394)
Q Consensus 381 ~~~~~ 385 (394)
+|-.+
T Consensus 212 g~d~~ 216 (264)
T cd06274 212 TFDDH 216 (264)
T ss_pred EeCCH
Confidence 77654
No 139
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=72.72 E-value=21 Score=35.50 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=59.8
Q ss_pred ceeEEecCh-hHH-----HHHHHHHHHcCCCc-cceeecCCCCCHHHHHHHHHHHhc-CCC-ccEEEEEccCCCCChHHH
Q 016159 293 EIGCMVNGA-GLA-----MATMDIIKLHGGTP-ANFLDVGGNASEGQVVEAFKILTS-DEK-VKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 293 ~Ig~~~nGa-Gl~-----m~t~D~i~~~gg~~-aNflD~gG~a~~~~~~~a~~~~l~-~~~-v~~i~vni~ggi~~~d~v 363 (394)
+|++++.+. ..+ -...+++..+|..+ -.++-.|.. +.+..+++++-++. .+. .++|| ...|.+
T Consensus 177 ~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~-~~~~g~~~~~~ll~~~~~~ptAif-------~~nD~~ 248 (333)
T COG1609 177 RIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDF-SEESGYEAAERLLARGEPRPTAIF-------CANDLM 248 (333)
T ss_pred eEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCC-ChHHHHHHHHHHHhcCCCCCcEEE-------EcCcHH
Confidence 788887763 222 34568888888886 555554444 65666665555554 444 89999 556899
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecceE
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
|-|+++++++.++++ +.+|-...+
T Consensus 249 Alg~l~~~~~~g~~vP~disviGfDd~~~ 277 (333)
T COG1609 249 ALGALRALRELGLRVPEDLSVIGFDDIEL 277 (333)
T ss_pred HHHHHHHHHHcCCCCCCeeEEEEecChhh
Confidence 999999999999875 666665443
No 140
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=72.72 E-value=17 Score=33.79 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=45.4
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
.+.+..+|-+.-......++.+.+..+++++-+++ .|.+++|+ ...|.+|.|+++++++.+.++ +++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~vp~di~vvg 212 (269)
T cd06275 140 RRAMAEAGLPVNPGWIVEGDFECEGGYEAMQRLLAQPKRPTAVF-------CGNDLMAMGALCAAQEAGLRVPQDLSIIG 212 (269)
T ss_pred HHHHHHcCCCCCHHHhccCCCChHHHHHHHHHHHcCCCCCcEEE-------ECChHHHHHHHHHHHHcCCCCCcceEEEE
Confidence 34455554333222223344455555666655554 56789998 356889999999999998752 778
Q ss_pred eecce
Q 016159 382 FHSNY 386 (394)
Q Consensus 382 ~~~~~ 386 (394)
|-++.
T Consensus 213 ~d~~~ 217 (269)
T cd06275 213 YDDIE 217 (269)
T ss_pred eCChh
Confidence 76653
No 141
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.26 E-value=10 Score=35.06 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 328 ASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 328 a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
.+.+..+++++-++ +.|++++|| ...|..|.|+++++++.+.++ ++++-++-.|
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~i~-------~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~~~~ 219 (268)
T cd06289 160 PSRQGGAEAVAQLLDLPPRPTAIV-------CFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDVAEA 219 (268)
T ss_pred cchhhHHHHHHHHHcCCCCCCEEE-------EcCcHHHHHHHHHHHHcCCCCCcceEEEeecCchHH
Confidence 34455555555555 458899988 445778999999999998752 7777666443
No 142
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=71.31 E-value=19 Score=33.27 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecce
Q 016159 328 ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 328 a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
.+.+..++.++-++..+.+++|| +..|.+|.|+++++++.+.++ .++|-++-
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~ai~-------~~~d~~a~g~~~~~~~~g~~ip~~i~ii~~d~~~ 213 (264)
T cd01574 157 WSAESGYRAGRELLREGDPTAVF-------AANDQMALGVLRALHELGLRVPDDVSVVGFDDIP 213 (264)
T ss_pred CCHHHHHHHHHHHHhCCCCcEEE-------EcCcHHHHHHHHHHHHcCCCCccceEEecccCch
Confidence 34455555555555544488988 456788999999999998652 77776653
No 143
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.28 E-value=15 Score=34.08 Aligned_cols=73 Identities=22% Similarity=0.132 Sum_probs=45.2
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHHH-HhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKI-LTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~-~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
.+.+..+|.+.-...-..++.+.+..++.++- +.+.|.+++|+ ...|..|.++++++++++.++ +++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~~~~~~l~~~g~~~p~~i~v~~ 212 (270)
T cd06296 140 RAALAEAGIPVDPALVREGDFSTESGFRAAAELLALPERPTAIF-------AGNDLMALGVYEAARERGLRIPEDLSVVG 212 (270)
T ss_pred HHHHHHcCCCCChHHheeCCCCHHHHHHHHHHHHhCCCCCcEEE-------EcCcHHHHHHHHHHHHhCCCCCCceEEEE
Confidence 34555555433221122344555555554444 44557888888 445778999999999999752 778
Q ss_pred eecceE
Q 016159 382 FHSNYF 387 (394)
Q Consensus 382 ~~~~~~ 387 (394)
|-++..
T Consensus 213 ~d~~~~ 218 (270)
T cd06296 213 FDDLPE 218 (270)
T ss_pred ECChhh
Confidence 877653
No 144
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=71.23 E-value=24 Score=32.82 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=50.3
Q ss_pred CceeEEecChhHHH------HHHHHHHHcCC-Cc-cceeecCCCCCHHHHHHHH-HHHhcCCCc--cEEEEEccCCCCCh
Q 016159 292 GEIGCMVNGAGLAM------ATMDIIKLHGG-TP-ANFLDVGGNASEGQVVEAF-KILTSDEKV--KAILVNIFGGIMKC 360 (394)
Q Consensus 292 G~Ig~~~nGaGl~m------~t~D~i~~~gg-~~-aNflD~gG~a~~~~~~~a~-~~~l~~~~v--~~i~vni~ggi~~~ 360 (394)
++|+++... +... ...+.+..+++ +. ..+.+..+ -+.+..++++ +++.++|.+ ++|+. ..
T Consensus 121 ~~i~~i~~~-~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ai~~-------~~ 191 (273)
T cd06305 121 GNVGYVNVA-GFPPLDRRYDVWQAVLKAYPGIKEVAELGDVSN-NTAQDAAAQVEAVLKKYPKGGIDAIWA-------AW 191 (273)
T ss_pred CCEEEEEcc-CCchHHHHHHHHHHHHHHCCCcEEecccccccc-cchhHHHHHHHHHHHHCCCcccCeEEE-------cC
Confidence 588887643 3221 23445555552 21 12222222 2334444444 555577888 88883 35
Q ss_pred HHHHHHHHHHHHHcCCc--c-eEEeecce
Q 016159 361 DVIASGIVNAAKQVSAL--D-CFGFHSNY 386 (394)
Q Consensus 361 d~vA~gii~a~~~~~~~--~-~~~~~~~~ 386 (394)
|.+|.|+++++++++.+ + ..+|.++.
T Consensus 192 d~~a~g~~~~l~~~g~~~di~iig~d~~~ 220 (273)
T cd06305 192 DEFAKGAKQALDEAGRTDEIKIYGVDISP 220 (273)
T ss_pred hhhhHHHHHHHHHcCCCCCceEEEecCCH
Confidence 77899999999999987 3 77777654
No 145
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=70.88 E-value=14 Score=36.24 Aligned_cols=90 Identities=20% Similarity=0.205 Sum_probs=56.6
Q ss_pred CceeEEecChhH------HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGL------AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl------~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|+++...... --...+++..+|.......-..++.+.+.-+++++-++ +.+.+++|| ...|.+|
T Consensus 177 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nd~~A 249 (346)
T PRK10401 177 QRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTGTPDMQGGEAAMVELLGRNLQLTAVF-------AYNDNMA 249 (346)
T ss_pred CeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecCCCChHHHHHHHHHHHcCCCCCcEEE-------ECCcHHH
Confidence 477777533221 12245777777765432222335555566555555555 456788988 3458899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
-|++++++++++++ +.+|-++-++
T Consensus 250 ~g~~~al~~~G~~vP~disvigfD~~~~~ 278 (346)
T PRK10401 250 AGALTALKDNGIAIPLHLSIIGFDDIPIA 278 (346)
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCCchHH
Confidence 99999999999865 7777665443
No 146
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=70.37 E-value=11 Score=40.67 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEE--EccCCCCCh-HHHHHHHHHHHHHcCCcceEEeec
Q 016159 327 NASEGQVVEAFKILTSDEKVKAILV--NIFGGIMKC-DVIASGIVNAAKQVSALDCFGFHS 384 (394)
Q Consensus 327 ~a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~-d~vA~gii~a~~~~~~~~~~~~~~ 384 (394)
....+.+.+.++....||+||+|++ |.+||-.-| +.+.+ -++.+++.+-.++=++.|
T Consensus 328 ~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~-~i~~~~~~gKPVva~~~g 387 (584)
T TIGR00705 328 NTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRR-ELARAQARGKPVIVSMGA 387 (584)
T ss_pred ccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHH-HHHHHHhCCCcEEEEECC
Confidence 3456788899999999999999888 789996554 44444 334445544222334444
No 147
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=69.57 E-value=13 Score=34.88 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=37.7
Q ss_pred CHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCC--cc-eEEeecceEE
Q 016159 329 SEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSA--LD-CFGFHSNYFC 388 (394)
Q Consensus 329 ~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~--~~-~~~~~~~~~~ 388 (394)
+.+..+..+ +++.+.|++++|+ +..|.+|.++++++++.+. +. +.+|-++..+
T Consensus 165 ~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~~~~~al~~~g~~~di~vig~d~~~~~ 221 (275)
T cd06320 165 DREKAYDVATTILQRNPDLKAIY-------CNNDTMALGVVEAVKNAGKQGKVLVVGTDGIPEA 221 (275)
T ss_pred cHHHHHHHHHHHHHhCCCccEEE-------ECCchhHHHHHHHHHhcCCCCCeEEEecCCCHHH
Confidence 344444444 4444567888888 5568899999999999987 34 7888887544
No 148
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=69.51 E-value=12 Score=37.61 Aligned_cols=63 Identities=32% Similarity=0.411 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCccceeecC---CCCCHHHHHHHHHHHhcCCCccEEEE-EccCCCCChHHHHHHHHHHHHHcCC
Q 016159 304 AMATMDIIKLHGGTPANFLDVG---GNASEGQVVEAFKILTSDEKVKAILV-NIFGGIMKCDVIASGIVNAAKQVSA 376 (394)
Q Consensus 304 ~m~t~D~i~~~gg~~aNflD~g---G~a~~~~~~~a~~~~l~~~~v~~i~v-ni~ggi~~~d~vA~gii~a~~~~~~ 376 (394)
-.+|..++...|.+|- |+|+- ++.+++.+.++++ ++.|+|++ |++|-..+.+ .|.+.++++++
T Consensus 75 ~~~~~~ai~~~G~~pv-~~Di~~~~~~id~~~~~~~i~-----~~t~ai~~~h~~G~~~d~~----~i~~~~~~~~i 141 (363)
T PF01041_consen 75 FPATASAILWAGAEPV-FVDIDPETLNIDPEALEKAIT-----PKTKAILVVHLFGNPADMD----AIRAIARKHGI 141 (363)
T ss_dssp -THHHHHHHHTT-EEE-EE-BETTTSSB-HHHHHHHHH-----TTEEEEEEE-GGGB---HH----HHHHHHHHTT-
T ss_pred chHHHHHHHHhccEEE-EEeccCCcCCcCHHHHHHHhc-----cCccEEEEecCCCCcccHH----HHHHHHHHcCC
Confidence 4567788888887774 66665 6777888777643 55688777 9988766544 45555555543
No 149
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.64 E-value=20 Score=34.57 Aligned_cols=70 Identities=20% Similarity=0.120 Sum_probs=44.1
Q ss_pred HHHHHHcCCC-ccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eE
Q 016159 308 MDIIKLHGGT-PANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CF 380 (394)
Q Consensus 308 ~D~i~~~gg~-~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~ 380 (394)
.+.+..+|+- ..... . ++.+.+..+++++-++ ++|++++|| ..-|.+|.|+++++++.++++ +.
T Consensus 165 ~~~~~~~g~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A~g~~~al~~~g~~vp~di~vi 235 (305)
T cd06324 165 RRALAEHPDVRLRQVV-Y-AGWSEDEAYEQAENLLKRYPDVRLIW-------AANDQMAFGALRAAKEAGRKPGRDVLFG 235 (305)
T ss_pred HHHHHHCCCceEeeee-c-CCCCHHHHHHHHHHHHHHCCCccEEE-------ECCchHHHHHHHHHHHcCCCcCCCEEEE
Confidence 4555555521 11222 2 3445555555555444 568899988 334789999999999999763 77
Q ss_pred Eeecce
Q 016159 381 GFHSNY 386 (394)
Q Consensus 381 ~~~~~~ 386 (394)
+|-++.
T Consensus 236 g~D~~~ 241 (305)
T cd06324 236 GVNWSP 241 (305)
T ss_pred ecCCCH
Confidence 777663
No 150
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=68.53 E-value=19 Score=31.50 Aligned_cols=55 Identities=24% Similarity=0.258 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCcceEEeecc
Q 016159 328 ASEGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSN 385 (394)
Q Consensus 328 a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~~~~~~~~~ 385 (394)
.+.+.+.++++-+..|+++++|++ |.+||-.. -+..|.+++++.+.+++--++|.
T Consensus 11 ~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~---~~~~i~~~l~~~~kpvva~~~g~ 67 (161)
T cd00394 11 VSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVD---AGMNIVDALQASRKPVIAYVGGQ 67 (161)
T ss_pred chHHHHHHHHHHHHhCCCCceEEEEEECCCcCHH---HHHHHHHHHHHhCCCEEEEECCh
Confidence 456777888999999999999887 77777322 23667788888774444444443
No 151
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.48 E-value=21 Score=33.30 Aligned_cols=56 Identities=23% Similarity=0.153 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecceEE
Q 016159 326 GNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNYFC 388 (394)
Q Consensus 326 G~a~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~~~ 388 (394)
++.+.+.-++++ +++.+.|.+++|+ ...|.+|.++++++++.+++. +.+|.++..+
T Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~di~v~g~d~~~~~ 219 (271)
T cd06321 161 GKGSRDGGLRVMQGLLTRFPKLDGVF-------AINDPTAIGADLAAKQAGRNDIKITSVDGAPDA 219 (271)
T ss_pred CCCChhhHHHHHHHHHHhCCCCCEEE-------ECCchhHHHHHHHHHHcCCCCcEEEEecCCHHH
Confidence 344444434444 4455678899998 356889999999999999865 7787766443
No 152
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=68.27 E-value=18 Score=33.33 Aligned_cols=70 Identities=21% Similarity=0.172 Sum_probs=43.7
Q ss_pred HHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEe
Q 016159 309 DIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGF 382 (394)
Q Consensus 309 D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~ 382 (394)
+.+..+|.+.....-..++.+.+.-++.++-++ +.|.+++||. ..|..|.|+++++++.+.++ .++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~~~~a~g~~~al~~~g~~~p~~v~v~g~ 211 (267)
T cd06284 139 QALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRPTAIFC-------FSDEMAIGAISALKELGLRVPEDISVVGF 211 (267)
T ss_pred HHHHHcCCCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcEEEE-------cCcHHHHHHHHHHHHcCCCCccceeEEEe
Confidence 455556644444333334445555555555444 5678899883 34567899999999998753 6666
Q ss_pred ecc
Q 016159 383 HSN 385 (394)
Q Consensus 383 ~~~ 385 (394)
-+.
T Consensus 212 d~~ 214 (267)
T cd06284 212 DDI 214 (267)
T ss_pred CCH
Confidence 544
No 153
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=68.02 E-value=24 Score=32.95 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=45.8
Q ss_pred HHHHHHcCCCccc--eeecCCCCCHHHHHHHHHH-HhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----e
Q 016159 308 MDIIKLHGGTPAN--FLDVGGNASEGQVVEAFKI-LTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----C 379 (394)
Q Consensus 308 ~D~i~~~gg~~aN--flD~gG~a~~~~~~~a~~~-~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~ 379 (394)
.+.++.+|..... ......+.+.+..++.++- +.+.|.+++|| ...|.+|.|+++++++.++++ +
T Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~av~-------~~~d~~a~g~~~al~~~g~~~p~dv~v 215 (273)
T cd01541 143 IKAYREHGIPFNPSNVITYTTEEKEEKLFEKIKEILKRPERPTAIV-------CYNDEIALRVIDLLKELGLKIPEDISV 215 (273)
T ss_pred HHHHHHcCCCCChHHEEeccccchhhHHHHHHHHHHcCCCCCCEEE-------EcCcHHHHHHHHHHHHcCCCCCCcEEE
Confidence 4555555543221 2222223333444444444 44568899998 456789999999999998763 7
Q ss_pred EEeecceEE
Q 016159 380 FGFHSNYFC 388 (394)
Q Consensus 380 ~~~~~~~~~ 388 (394)
++|-++..+
T Consensus 216 vg~d~~~~~ 224 (273)
T cd01541 216 VGFDDSYLS 224 (273)
T ss_pred EEcCCcchh
Confidence 888777554
No 154
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=67.56 E-value=19 Score=34.70 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcC-Ccc
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVS-ALD 378 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~-~~~ 378 (394)
..|++..+|...-...=.-|+-+.+.-+++++ ++.+.|.+++|| +..|.+|.|+++++++.+ .+.
T Consensus 141 y~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~-------~~nd~~A~ga~~~l~~~gr~~i 207 (279)
T PF00532_consen 141 YRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIF-------CANDMMAIGAIRALRERGRLKI 207 (279)
T ss_dssp HHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEE-------ESSHHHHHHHHHHHHHTT-TCT
T ss_pred HHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEE-------EeCHHHHHHHHHHHHHcCCccc
Confidence 57889998873332233345667666666655 455567889999 667899999999999998 554
No 155
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=67.34 E-value=18 Score=34.96 Aligned_cols=88 Identities=10% Similarity=0.040 Sum_probs=55.9
Q ss_pred CceeEEecChhH------HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGL------AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl------~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|+++..-... .-...+++..+|..+ .++ ..++.+.+.-+++++-+++ .+..++|| ...|.+|
T Consensus 180 r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A 250 (328)
T PRK11303 180 ESILLLGALPELSVSFEREQGFRQALKDDPREV-HYL-YANSFEREAGAQLFEKWLETHPMPDALF-------TTSYTLL 250 (328)
T ss_pred CeEEEEeCccccccHHHHHHHHHHHHHHcCCCc-eEE-EeCCCChHHHHHHHHHHHcCCCCCCEEE-------EcCcHHH
Confidence 478887532221 123567888887643 222 2344454555556655554 57789999 3468899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
.|+++++++.++++ +.+|-++.++
T Consensus 251 ~g~~~al~~~g~~vP~disv~gfd~~~~~ 279 (328)
T PRK11303 251 QGVLDVLLERPGELPSDLAIATFGDNELL 279 (328)
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCChHHH
Confidence 99999999998764 6677655443
No 156
>PRK10949 protease 4; Provisional
Probab=66.97 E-value=15 Score=40.07 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCccEEEE--EccCCCCC-hHHHHHHHHHHHHHcC
Q 016159 325 GGNASEGQVVEAFKILTSDEKVKAILV--NIFGGIMK-CDVIASGIVNAAKQVS 375 (394)
Q Consensus 325 gG~a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~-~d~vA~gii~a~~~~~ 375 (394)
.|..+.+.+.+.++-...||+||+|++ |.+||-.- ++++.+.|.+ +|+.+
T Consensus 344 ~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~-~r~~g 396 (618)
T PRK10949 344 PGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAA-ARAAG 396 (618)
T ss_pred CCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHH-HHhcC
Confidence 356677899999999999999999888 88888654 4555555544 45444
No 157
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=66.35 E-value=16 Score=33.87 Aligned_cols=54 Identities=19% Similarity=0.056 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 328 ASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 328 a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
.+.+..+++++-++ +.|++++|| +..|.+|.++++++++.++++ +++|-++..+
T Consensus 154 ~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~~~~~~l~~~g~~vp~dv~vvg~d~~~~~ 213 (261)
T cd06272 154 LSAEGGDNAAKKLLKESDLPTAII-------CGSYDIALGVLSALNKQGISIPEDIEIISYDNIPQM 213 (261)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEE-------ECCcHHHHHHHHHHHHhCCCCCCceEEEeeCChhHH
Confidence 34455566666555 456789998 456788999999999999753 7777766544
No 158
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=66.23 E-value=24 Score=32.49 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHHHHcCCCc-cceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----e
Q 016159 307 TMDIIKLHGGTP-ANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----C 379 (394)
Q Consensus 307 t~D~i~~~gg~~-aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~ 379 (394)
..|.+..+|..+ ...+...+ .+.+..+++++-++ +.|.+++|+ ...|.+|.|+++++++++.++ +
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~vp~di~v 210 (267)
T cd06283 139 FKEALAEHGIGVNEELIEIDD-EDADELDERLRQLLNKPKKKTAIF-------AANGLILLEVLKALKELGIRIPEDVGL 210 (267)
T ss_pred HHHHHHHcCCCCCcceeEecc-cchHHHHHHHHHHHcCCCCCCEEE-------EcCcHHHHHHHHHHHHcCCCCccceEE
Confidence 356666666432 22333332 33455555555554 557789998 446789999999999998753 6
Q ss_pred EEeecceE
Q 016159 380 FGFHSNYF 387 (394)
Q Consensus 380 ~~~~~~~~ 387 (394)
.+|-++-+
T Consensus 211 ~g~d~~~~ 218 (267)
T cd06283 211 IGFDDTEW 218 (267)
T ss_pred EEeCCccH
Confidence 67665543
No 159
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.63 E-value=28 Score=32.25 Aligned_cols=70 Identities=19% Similarity=0.097 Sum_probs=44.4
Q ss_pred HHHHHHcCCCcc--ceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----e
Q 016159 308 MDIIKLHGGTPA--NFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----C 379 (394)
Q Consensus 308 ~D~i~~~gg~~a--NflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~ 379 (394)
++.+..+|.+.. ..++ ++.+.+..+++++-++ ..|.+++|| ..-|.+|.|++++++++++++ +
T Consensus 137 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~~p~di~i 207 (265)
T cd06285 137 RAALAEAGIEVPPERIVY--SGFDIEGGEAAAEKLLRSDSPPTAIF-------AVNDFAAIGVMGAARDRGLRVPDDVAL 207 (265)
T ss_pred HHHHHHcCCCCChhhEEe--CCCCHHHHHHHHHHHHcCCCCCCEEE-------EcCcHHHHHHHHHHHHcCCCCCcceEE
Confidence 455666654422 2222 4445555555555544 567788988 334678999999999999864 6
Q ss_pred EEeecce
Q 016159 380 FGFHSNY 386 (394)
Q Consensus 380 ~~~~~~~ 386 (394)
.+|-++.
T Consensus 208 ig~d~~~ 214 (265)
T cd06285 208 VGYNDIP 214 (265)
T ss_pred EeecCcH
Confidence 6666553
No 160
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.07 E-value=25 Score=32.76 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=42.8
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
.+.+..+|.+..+..-...+. .+..+++++-++ +.+.+++|| ...|.+|.|+++++++.++++ +++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~ip~dv~iig 210 (269)
T cd06281 139 KAAFAAAGLPPDPALVRLSTP-AASGFDATRALLALPDRPTAII-------AGGTQVLVGVLRALREAGLRIPRDLSVIS 210 (269)
T ss_pred HHHHHHcCCCCCHHHeecCcH-HHHHHHHHHHHHcCCCCCcEEE-------EcCcHHHHHHHHHHHHcCCCCCcceeEEE
Confidence 355555654432222222222 344455555444 567789988 346789999999999999763 677
Q ss_pred eecc
Q 016159 382 FHSN 385 (394)
Q Consensus 382 ~~~~ 385 (394)
|-++
T Consensus 211 ~d~~ 214 (269)
T cd06281 211 IGDS 214 (269)
T ss_pred ecCc
Confidence 7654
No 161
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.77 E-value=43 Score=31.75 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=49.1
Q ss_pred CCceeEEecChh--H----HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHH-hcCCCccEEEEEccCCCCChHHH
Q 016159 291 DGEIGCMVNGAG--L----AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL-TSDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 291 ~G~Ig~~~nGaG--l----~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~-l~~~~v~~i~vni~ggi~~~d~v 363 (394)
.++|+++..-.+ . .....+.+..++. ..+.+...+..+.+.-+++++-+ .+.|++++||. ..|.+
T Consensus 126 ~~~i~~l~~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~ 197 (294)
T cd06316 126 KGKVGLIYHGADYFVTNQRDQGFKETIKKNYP-DITIVAEKGIDGPSKAEDIANAMLTQNPDLKGIYA-------VWDVP 197 (294)
T ss_pred CceEEEEeCCCCcccHHHHHHHHHHHHHHhCC-CcEEEeecCCcchhHHHHHHHHHHHhCCCeeEEEe-------CCCch
Confidence 368888853211 1 1334556655542 22444443333234444455544 45688899882 34667
Q ss_pred HHHHHHHHHHcCCc-c-eEEee
Q 016159 364 ASGIVNAAKQVSAL-D-CFGFH 383 (394)
Q Consensus 364 A~gii~a~~~~~~~-~-~~~~~ 383 (394)
|.++++++++++.+ + +.+|-
T Consensus 198 a~g~~~~l~~~g~~di~vvg~d 219 (294)
T cd06316 198 AEGVIAALRAAGRDDIKVTTVD 219 (294)
T ss_pred hHHHHHHHHHcCCCCceEEEeC
Confidence 99999999999983 3 55654
No 162
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=64.38 E-value=25 Score=32.84 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc---eEEeecceEE
Q 016159 326 GNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---CFGFHSNYFC 388 (394)
Q Consensus 326 G~a~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---~~~~~~~~~~ 388 (394)
++-+.+..++.+ +++.++|++++|+ ...|.+|.|+++++++++++. +.+|-++..+
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~aI~-------~~~d~~a~g~~~al~~~g~~~dv~vvg~d~~~~~ 221 (270)
T cd06308 162 GDWLKEKAEEKMEELLQANPDIDLVY-------AHNDPMALGAYLAAKRAGREKEIKFIGIDGLPGP 221 (270)
T ss_pred CCccHHHHHHHHHHHHHhCCCCcEEE-------eCCcHHHHHHHHHHHHcCCCCCcEEEEecCCcch
Confidence 444545544444 4455678899988 456889999999999998753 7777776554
No 163
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=64.28 E-value=6.2 Score=39.21 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=39.3
Q ss_pred cCCCCCCceeeC-CHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhccccccc
Q 016159 42 YGINVPKGLAVA-SVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTK 119 (394)
Q Consensus 42 ~GIpvp~~~~~~-s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~ 119 (394)
..|.+|+..++. +.++..+..++-| -.+|+|+||.+.+| ..++ .-..+. +++.+.+ +
T Consensus 111 ~~i~~P~~v~i~~~~~~~~~~l~~ag-L~fPlI~KPlvA~G-sa~S-------H~Maivf~~~gL~~---------L--- 169 (307)
T PF05770_consen 111 GRIRVPKFVVINSDAESLPELLKEAG-LKFPLICKPLVACG-SADS-------HKMAIVFNEEGLKD---------L--- 169 (307)
T ss_dssp TTEE-S-EEEESSSHCCHHHHHHCTT-S-SSEEEEESB-SS-TSCC-------CEEEEE-SGGGGTT-------------
T ss_pred CcccCCceEEEcCCHHHHHHHHHHCC-CcccEEeeehhhcC-Cccc-------eEEEEEECHHHHhh---------c---
Confidence 478899998887 4444444443334 34999999998765 3333 456677 7766542 1
Q ss_pred ccCCCCcccceEEEEeeeCCCee
Q 016159 120 QTGPQGKIVSKVYLCEKLSLVNE 142 (394)
Q Consensus 120 q~~~~g~~v~~vlVee~v~~~~E 142 (394)
. ..+++|||+.++-=
T Consensus 170 -------~-~P~VlQeFVNHggv 184 (307)
T PF05770_consen 170 -------K-PPCVLQEFVNHGGV 184 (307)
T ss_dssp ---------SSEEEEE----TTE
T ss_pred -------C-CCEEEEEeecCCCE
Confidence 0 25789999987543
No 164
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=63.99 E-value=26 Score=32.27 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=46.1
Q ss_pred HHHHHHcCCCccc-eeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eE
Q 016159 308 MDIIKLHGGTPAN-FLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CF 380 (394)
Q Consensus 308 ~D~i~~~gg~~aN-flD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~ 380 (394)
.+.+..+|..... .... ++.+.+..+++++-++. .+..++||. .-|.+|.++++++++.++++ ++
T Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~al~~~g~~vp~~i~ii 214 (268)
T cd06271 143 RRALAEAGLPLDPALIVS-GDMTEEGGYAAAAELLALPDRPTAIVC-------SSELMALGVLAALAEAGLRPGRDVSVV 214 (268)
T ss_pred HHHHHHhCCCCCCceEEe-CCCChHHHHHHHHHHHhCCCCCCEEEE-------cCcHHHHHHHHHHHHhCCCCCcceeEE
Confidence 3555666654322 2222 44455666666665554 466888883 33678999999999998763 77
Q ss_pred EeecceE
Q 016159 381 GFHSNYF 387 (394)
Q Consensus 381 ~~~~~~~ 387 (394)
++-++..
T Consensus 215 g~d~~~~ 221 (268)
T cd06271 215 GFDDSPP 221 (268)
T ss_pred EecCchH
Confidence 7777643
No 165
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=63.73 E-value=20 Score=33.61 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=47.4
Q ss_pred HHHHHHHcCCC-ccceeecCCCCCHHHHHHHHHHHhc-C--CCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc----
Q 016159 307 TMDIIKLHGGT-PANFLDVGGNASEGQVVEAFKILTS-D--EKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---- 378 (394)
Q Consensus 307 t~D~i~~~gg~-~aNflD~gG~a~~~~~~~a~~~~l~-~--~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---- 378 (394)
..+.+..+|.. +....+ ++-+.++.+++++-+++ . +.+++|| ...|.+|.++++++++.+.++
T Consensus 139 f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~vp~di 209 (270)
T cd01544 139 FREYMKEKGLYDPELIYI--GDFTVESGYQLMKEALKSLGDNLPTAFF-------IASDPMAIGALRALQEAGIKVPEDV 209 (270)
T ss_pred HHHHHHHcCCCChheEee--CCCCHHHHHHHHHHHHhccCCCCCCEEE-------EcCcHHHHHHHHHHHHcCCCCCCce
Confidence 34566666631 112222 34455666666665554 3 4588888 346889999999999999863
Q ss_pred -eEEeecceEE
Q 016159 379 -CFGFHSNYFC 388 (394)
Q Consensus 379 -~~~~~~~~~~ 388 (394)
+++|-++.++
T Consensus 210 ~v~g~d~~~~~ 220 (270)
T cd01544 210 SVISFNDIEVA 220 (270)
T ss_pred EEEEECChhHH
Confidence 8888776654
No 166
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=62.81 E-value=19 Score=35.33 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=46.6
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcC---CCccEEEEEccCCCCChHHHHHHHHHHHHHcCC-cc-eEEe
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSD---EKVKAILVNIFGGIMKCDVIASGIVNAAKQVSA-LD-CFGF 382 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~---~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~-~~-~~~~ 382 (394)
.|.+..+|-++....-..|.-+.+.-+++++-+++. |++++|+ +..|.+|.|+++++++++. ++ +.+|
T Consensus 185 ~~al~~~g~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ai~-------~~~d~~A~gvl~al~~~Gl~~vpVvg~ 257 (330)
T PRK15395 185 IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI-------ANNDAMAMGAVEALKAHNKSSIPVFGV 257 (330)
T ss_pred HHHHHhcCCCeeeeecccCCcCHHHHHHHHHHHHhhCcCCCeeEEE-------ECCchHHHHHHHHHHhcCCCCCeEEee
Confidence 466666665432222113444555555666555543 5788888 4567899999999999998 66 7777
Q ss_pred ecceE
Q 016159 383 HSNYF 387 (394)
Q Consensus 383 ~~~~~ 387 (394)
-++..
T Consensus 258 D~~~~ 262 (330)
T PRK15395 258 DALPE 262 (330)
T ss_pred CCCHH
Confidence 65543
No 167
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=62.09 E-value=22 Score=31.63 Aligned_cols=49 Identities=22% Similarity=0.193 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 327 NASEGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 327 ~a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
+.+.+.+...+..+.++++++.|.+ |.+||-. .-+..|.++++.++.++
T Consensus 11 ~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v---~~~~~i~~~i~~~~~~v 61 (162)
T cd07013 11 DISANQFAAQLLFLGAVNPEKDIYLYINSPGGDV---FAGMAIYDTIKFIKADV 61 (162)
T ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcH---HHHHHHHHHHHhcCCCc
Confidence 3456777778888888887777555 9999964 33578899999887766
No 168
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=61.34 E-value=31 Score=32.01 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=37.7
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEEEcc--CCCCC-hHHHHHHHHHHHHHcCCcceEEeec
Q 016159 324 VGGNASEGQVVEAFKILTSDEKVKAILVNIF--GGIMK-CDVIASGIVNAAKQVSALDCFGFHS 384 (394)
Q Consensus 324 ~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~--ggi~~-~d~vA~gii~a~~~~~~~~~~~~~~ 384 (394)
..|..+.+.+.++++-+.+||++++|++.++ ||-.. .+++.+ .++++++.+-.++=.+||
T Consensus 17 ~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~-~l~~~~~~~kpVia~v~g 79 (211)
T cd07019 17 TQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRA-ELAAARAAGKPVVVSAGG 79 (211)
T ss_pred CCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHH-HHHHHHhCCCCEEEEECC
Confidence 3466678999999999999999999998544 43222 334433 345566553333333343
No 169
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=61.03 E-value=29 Score=32.16 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=43.7
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
.+.+..++...-+..-+.++-+.+...+.++-++ +.+..++|+ ..+|.+|.++++++++.+.++ +++
T Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~~~~a~~~~~~l~~~g~~~p~~i~vig 212 (268)
T cd06273 140 RAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVI-------CGNDVLALGALYEARRLGLSVPEDLSIVG 212 (268)
T ss_pred HHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEE-------EcChHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 3555555543222111123344444444444444 467889988 346788999999999998753 677
Q ss_pred eecceE
Q 016159 382 FHSNYF 387 (394)
Q Consensus 382 ~~~~~~ 387 (394)
|-++.+
T Consensus 213 ~d~~~~ 218 (268)
T cd06273 213 FDDIDG 218 (268)
T ss_pred cCChhH
Confidence 666544
No 170
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.98 E-value=58 Score=30.13 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=49.6
Q ss_pred CceeEEecC--hhHH----HHHHHHHHHcCCCccceeec-CCCCCHHHHHHHHH-HHhcC-CCccEEEEEccCCCCChHH
Q 016159 292 GEIGCMVNG--AGLA----MATMDIIKLHGGTPANFLDV-GGNASEGQVVEAFK-ILTSD-EKVKAILVNIFGGIMKCDV 362 (394)
Q Consensus 292 G~Ig~~~nG--aGl~----m~t~D~i~~~gg~~aNflD~-gG~a~~~~~~~a~~-~~l~~-~~v~~i~vni~ggi~~~d~ 362 (394)
++|+++..- -+.. ....+.+..+|. .-+..+. -+.-+.+..+..++ ++.++ |++++||+ ..|.
T Consensus 126 ~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-------~~d~ 197 (275)
T cd06317 126 GQIVVIAGQPGNGTAIERQKGFEDELAEVCP-GVEVLDTQPADWDREKAQVAMEALITKFGDDIDGVYA-------GDDN 197 (275)
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHhhCC-CCEEEeccCCCCCHHHHHHHHHHHHHhCCCCccEEEE-------CCCc
Confidence 578877531 1222 223466666552 1222322 23334444444444 44455 78999993 3467
Q ss_pred HHHHHHHHHHHcCCc--c-eEEeecc
Q 016159 363 IASGIVNAAKQVSAL--D-CFGFHSN 385 (394)
Q Consensus 363 vA~gii~a~~~~~~~--~-~~~~~~~ 385 (394)
+|.++++++++.+++ + +++|-++
T Consensus 198 ~a~g~~~~l~~~g~~~dv~v~g~d~~ 223 (275)
T cd06317 198 MARGALNAAKEAGLAGGIVIVGANNF 223 (275)
T ss_pred HHHHHHHHHHhcCCcCCcEEEEeCCC
Confidence 899999999999984 3 6676544
No 171
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=60.70 E-value=33 Score=31.37 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=52.5
Q ss_pred CceeEEecCh------hHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGA------GLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGa------Gl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|+++.... ...-...+.+..+|+.+-..... ++.+.+...+++.-++ +.|.+++|+++ .|..|
T Consensus 122 ~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~d~~a 193 (267)
T cd01536 122 GKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVAVQD-GNWDREKALQAMEDLLQANPDIDAIFAA-------NDSMA 193 (267)
T ss_pred ceEEEEEcccccchHHHHHHHHHHHHHhCCCcEEEEEec-CCCcHHHHHHHHHHHHHhCCCccEEEEe-------cCCch
Confidence 4777774221 12223456777775322223333 3344555555555444 56788888852 34567
Q ss_pred HHHHHHHHHcCC--cc-eEEeecceEE
Q 016159 365 SGIVNAAKQVSA--LD-CFGFHSNYFC 388 (394)
Q Consensus 365 ~gii~a~~~~~~--~~-~~~~~~~~~~ 388 (394)
.++++++++.+. +. +.++.++.++
T Consensus 194 ~~~~~~l~~~g~~~~i~ivg~d~~~~~ 220 (267)
T cd01536 194 LGAVAALKAAGRKGDVKIVGVDGSPEA 220 (267)
T ss_pred HHHHHHHHhcCCCCCceEEecCCChhH
Confidence 899999999987 34 7777776544
No 172
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=60.55 E-value=34 Score=31.51 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCccEEEE--EccCC
Q 016159 326 GNASEGQVVEAFKILTSDEKVKAILV--NIFGG 356 (394)
Q Consensus 326 G~a~~~~~~~a~~~~l~~~~v~~i~v--ni~gg 356 (394)
|..+...+.++++-+.+||++++|++ |.+||
T Consensus 15 ~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg 47 (208)
T cd07023 15 GGIGADSLIEQLRKAREDDSVKAVVLRINSPGG 47 (208)
T ss_pred CCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCC
Confidence 46778889999999999999999888 55565
No 173
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.52 E-value=38 Score=31.51 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecce
Q 016159 328 ASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 328 a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
.+.+..+++++-++ +.+..++|| ..+|.+|.|+++++++.+.++ .++|-++.
T Consensus 153 ~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~vp~di~vigfd~~~ 210 (265)
T cd01543 153 QSWEEEQEELAQWLQSLPKPVGIF-------ACTDARARQLLEACRRAGIAVPEEVAVLGVDNDE 210 (265)
T ss_pred ccHHHHHHHHHHHHhcCCCCcEEE-------ecChHHHHHHHHHHHHhCCCCCCceEEEeeCCch
Confidence 34444444444444 557788988 457899999999999998753 78887764
No 174
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.17 E-value=58 Score=30.08 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=50.0
Q ss_pred CceeEEecChhHH-----HHHHHHHHHc-CCCccceeecCCCCCHHHHHHH-HHHHhcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA-----MATMDIIKLH-GGTPANFLDVGGNASEGQVVEA-FKILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~-----m~t~D~i~~~-gg~~aNflD~gG~a~~~~~~~a-~~~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++++-.... -...+.+..+ |.+. ..+-...+.+...+. .+++.+.|++++|+ ...|.+|
T Consensus 122 ~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a 191 (267)
T cd06322 122 GQVAIIDYPTVQSVVDRVRGFKEALADYPNIKI---VAVQPGITRAEALTAAQNILQANPDLDGIF-------AFGDDAA 191 (267)
T ss_pred ceEEEEecCCCccHHHHHHHHHHHHHhCCCcEE---EEecCCCChHHHHHHHHHHHHhCCCCCEEE-------EcCCcHH
Confidence 4788876321111 1223556655 4433 122222233444444 44555678899998 3456789
Q ss_pred HHHHHHHHHcCCcc--eEEeecceE
Q 016159 365 SGIVNAAKQVSALD--CFGFHSNYF 387 (394)
Q Consensus 365 ~gii~a~~~~~~~~--~~~~~~~~~ 387 (394)
.++++++++++.+. +.+|-++..
T Consensus 192 ~~~~~al~~~g~~di~vvg~d~~~~ 216 (267)
T cd06322 192 LGAVSAIKAAGRDNVKVIGFDGMPE 216 (267)
T ss_pred HHHHHHHHHCCCCCeEEEEecCCHH
Confidence 99999999999833 677766543
No 175
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=59.86 E-value=34 Score=33.24 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=55.9
Q ss_pred CceeEEecChhH------HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGL------AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl------~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++.+-... .....+++..+|-.+-....+.+..+.+..+++++-++ +.|.+++|| ...|.+|
T Consensus 183 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nd~~A 255 (342)
T PRK10014 183 QRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTSSQKQAAEAITALLRHNPTISAVV-------CYNETIA 255 (342)
T ss_pred CEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCCCChHHHHHHHHHHHcCCCCCCEEE-------ECCcHHH
Confidence 478877432111 12346777777754322222223344555555655444 567889988 4568899
Q ss_pred HHHHHHHHHcCCc-------------c-eEEeecceEEE
Q 016159 365 SGIVNAAKQVSAL-------------D-CFGFHSNYFCL 389 (394)
Q Consensus 365 ~gii~a~~~~~~~-------------~-~~~~~~~~~~~ 389 (394)
.|+++++++.+++ + +++|-++.+|.
T Consensus 256 ~g~~~~l~~~g~~vp~~~~~~~~p~di~vigfd~~~~~~ 294 (342)
T PRK10014 256 MGAWFGLLRAGRQSGESGVDRYFEQQVALAAFTDVPEAE 294 (342)
T ss_pred HHHHHHHHHcCCCCCCccccccccCceEEEEecCchHHh
Confidence 9999999998763 4 77887765543
No 176
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=59.51 E-value=52 Score=27.88 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=54.7
Q ss_pred ceeEEecChhHHHH------HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHH
Q 016159 293 EIGCMVNGAGLAMA------TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (394)
Q Consensus 293 ~Ig~~~nGaGl~m~------t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~g 366 (394)
+|+++..-.+..-. ..+++..+|-. ....+.....+.+.........++....++|| ...|.+|.+
T Consensus 11 ~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii-------~~~~~~a~~ 82 (160)
T PF13377_consen 11 RIAFIGGPPNSSVSRERLEGFREALKEHGIE-FEELIFFSDDDSEDAREAQLLWLRRLRPDAII-------CSNDRLALG 82 (160)
T ss_dssp SEEEEESSTTSHHHHHHHHHHHHHHHHTTSE-EEGEEEEESSSHHHHHHHHHHHHHTCSSSEEE-------ESSHHHHHH
T ss_pred eEEEEecCCCChhHHHHHHHHHHHHHHCCCC-CCeeEeecCCcchhHHHHHHHHHhcCCCcEEE-------EcCHHHHHH
Confidence 78888722221111 23456555544 55566666666666665555544444667888 456789999
Q ss_pred HHHHHHHcCCcc-----eEEeecce
Q 016159 367 IVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 367 ii~a~~~~~~~~-----~~~~~~~~ 386 (394)
+.+++++.++++ +.+|-++.
T Consensus 83 ~~~~l~~~g~~vP~di~vv~~~~~~ 107 (160)
T PF13377_consen 83 VLRALRELGIRVPQDISVVSFDDSP 107 (160)
T ss_dssp HHHHHHHTTSCTTTTSEEEEESSSG
T ss_pred HHHHHHHcCCcccccccEEEecCcH
Confidence 999999999865 77776643
No 177
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.85 E-value=37 Score=31.58 Aligned_cols=42 Identities=24% Similarity=0.144 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc
Q 016159 328 ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL 377 (394)
Q Consensus 328 a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~ 377 (394)
-+.+..+++++-+++.+ .++|| ...|.+|.|+++++++.+.+
T Consensus 165 ~~~~~~~~~~~~~l~~~-~~ai~-------~~~d~~a~g~~~~l~~~g~~ 206 (273)
T cd06292 165 FSVEGGQAAAVELLGSG-PTAIV-------AASDLMALGAIRAARRRGLR 206 (273)
T ss_pred CCHHHHHHHHHHHhcCC-CCEEE-------EcCcHHHHHHHHHHHHcCCC
Confidence 34455556666566544 77888 33578999999999999875
No 178
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=58.40 E-value=24 Score=35.38 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCC----Ccc-EEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEEEE
Q 016159 331 GQVVEAFKILTSDE----KVK-AILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFCLF 390 (394)
Q Consensus 331 ~~~~~a~~~~l~~~----~v~-~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~~~ 390 (394)
+-+.+.++.|+.|- +-+ +++||-.||.+.-+. +++.+.+.+++.++++...+-|||++.+
T Consensus 233 ~l~~~l~~~ll~~~~~~~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~gi~v~r~~vG~~~TSl 299 (329)
T PRK14483 233 ILAIELVNKLKSKYRWQKGDNFILLINGLGATTLMEQYIFANDIRRLLELEGLQITFVKVGTLLTSL 299 (329)
T ss_pred HHHHHHHHHHHhhcCcCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEeEeecccCcc
Confidence 44556677776632 222 477799999877654 5699999999999999999999998653
No 179
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.28 E-value=48 Score=30.74 Aligned_cols=71 Identities=15% Similarity=0.063 Sum_probs=44.5
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
.|.+..+|...-....+-++-+.+..++.++-++ +.|..++|+ ...|.+|.|+++++++++.++ +++
T Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~vp~di~i~g 211 (269)
T cd06293 139 REALAEAHIPEVPEYVCFGDYTREFGRAAAAQLLARGDPPTAIF-------AASDEIAIGLLEVLRERGLSIPGDMSLVG 211 (269)
T ss_pred HHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCCEEE-------EcCcHHHHHHHHHHHHcCCCCccceEEEe
Confidence 4566666543221112234445555555555444 557789998 345889999999999999763 666
Q ss_pred eecc
Q 016159 382 FHSN 385 (394)
Q Consensus 382 ~~~~ 385 (394)
|-++
T Consensus 212 ~d~~ 215 (269)
T cd06293 212 FDDV 215 (269)
T ss_pred ecCc
Confidence 6544
No 180
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=58.07 E-value=32 Score=31.69 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=43.0
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHH-HHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVE-AFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~-a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
.+.+..+|.......+ ...+.+..++ +.+++.+.|.+++|+. .-|.+|.++++++++.++++ +.+
T Consensus 140 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~al~~~g~~~p~di~v~g 210 (266)
T cd06282 140 RAAMRAAGLAPLPPVE--IPFNTAALPSALLALLTAHPAPTAIFC-------SNDLLALAVIRALRRLGLRVPDDLSVVG 210 (266)
T ss_pred HHHHHHcCCCCCcccc--CCCcHHHHHHHHHHHhcCCCCCCEEEE-------CCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 3455555554332222 2222333333 4445556678899883 23678999999999998753 677
Q ss_pred eecceEE
Q 016159 382 FHSNYFC 388 (394)
Q Consensus 382 ~~~~~~~ 388 (394)
+.++..+
T Consensus 211 ~d~~~~~ 217 (266)
T cd06282 211 FDGIAIG 217 (266)
T ss_pred ecchHHH
Confidence 7765443
No 181
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=57.98 E-value=45 Score=31.77 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=46.6
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCC-cc-eEEee
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSA-LD-CFGFH 383 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~-~~-~~~~~ 383 (394)
..+.+..+|.+... ..-++.+.+..+.++ +++.++|.+++|+ ...|.+|.++++++++.+. +. +++|.
T Consensus 170 f~~al~~~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A~g~l~al~~~G~~dv~vig~d 240 (295)
T PRK10653 170 FKQAVAAHKFNVLA--SQPADFDRTKGLNVMQNLLTAHPDVQAVF-------AQNDEMALGALRALQTAGKSDVMVVGFD 240 (295)
T ss_pred HHHHHhhCCCEEEE--ecCCCCCHHHHHHHHHHHHHhCCCcCEEE-------ECCChhHHHHHHHHHHcCCCceEEEEeC
Confidence 34666666543311 111233433344444 4445578888888 4568899999999999998 44 88999
Q ss_pred cceEE
Q 016159 384 SNYFC 388 (394)
Q Consensus 384 ~~~~~ 388 (394)
++..|
T Consensus 241 ~~~~~ 245 (295)
T PRK10653 241 GTPDG 245 (295)
T ss_pred CCHHH
Confidence 87643
No 182
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=57.85 E-value=56 Score=33.55 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=61.5
Q ss_pred EEccCCceeEEecChhHHHHHHHHHHHcCCCccce-eecCCCCCHHHHHHHHHHHhcCCCccEEEE---EccCCCCChHH
Q 016159 287 YIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANF-LDVGGNASEGQVVEAFKILTSDEKVKAILV---NIFGGIMKCDV 362 (394)
Q Consensus 287 y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNf-lD~gG~a~~~~~~~a~~~~l~~~~v~~i~v---ni~ggi~~~d~ 362 (394)
.++..+++-++.||. .+=--.|++..+|.+.-.. .+-|-..+++.+.++++ ++|.++.+++ -...|+.+..
T Consensus 76 l~~pgdkVLv~~nG~-FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~---~~~~~~~V~~vH~ETSTGvlnpl- 150 (383)
T COG0075 76 LVEPGDKVLVVVNGK-FGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD---KDPDIKAVAVVHNETSTGVLNPL- 150 (383)
T ss_pred ccCCCCeEEEEeCCh-HHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh---cCCCccEEEEEeccCcccccCcH-
Confidence 577778999999998 6666779999888754322 23456778999999888 8999999887 3456776632
Q ss_pred HHHHHHHHHHHcCC
Q 016159 363 IASGIVNAAKQVSA 376 (394)
Q Consensus 363 vA~gii~a~~~~~~ 376 (394)
+.|.+++|+++.
T Consensus 151 --~~I~~~~k~~g~ 162 (383)
T COG0075 151 --KEIAKAAKEHGA 162 (383)
T ss_pred --HHHHHHHHHcCC
Confidence 567778888753
No 183
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=57.76 E-value=31 Score=33.41 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 326 GNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 326 G~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
|+-+.+..++.++-+++ .+..++|| ...|.+|.|++++++++++++ +.+|-++.++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~D~~A~g~~~al~~~g~~vP~di~vigfD~~~~~ 275 (327)
T PRK10339 214 GGFSSSSGYELAKQMLAREDYPKALF-------VASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTA 275 (327)
T ss_pred cCcChhHHHHHHHHHHhCCCCCCEEE-------ECCcHHHHHHHHHHHHcCCCCCCceEEEeeCChhHH
Confidence 33344445555555554 45678888 456899999999999999864 7888776544
No 184
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=56.69 E-value=48 Score=31.26 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc---eEEeecc
Q 016159 325 GGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---CFGFHSN 385 (394)
Q Consensus 325 gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---~~~~~~~ 385 (394)
.++.+.+.-+++++-++ +.|++++|+ ..-|.+|-|++++++++++.. +.+|.++
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nd~~A~g~l~al~~~G~~~dv~vvg~d~~ 226 (280)
T cd06303 169 YTDATRQKAYQATSDILSNNPDVDFIY-------ACSTDIALGASDALKELGREDDILINGWGGG 226 (280)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCcEEE-------ECCcHHHHHHHHHHHHcCCCCCcEEEecCCC
Confidence 34455555555555444 567899998 345788999999999999752 7777764
No 185
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=56.23 E-value=30 Score=32.16 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=28.5
Q ss_pred CCcEEEEEeeecCCCCCCcccCCCcccEEECCHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEE
Q 016159 69 HKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYF 145 (394)
Q Consensus 69 ~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~yl 145 (394)
.+|+|+|.-..++|-|| |++.|.++..+.+.=+. .. . .-+.+|+|++...++.+
T Consensus 50 ~fPvVvKvG~~h~G~GK----------vkv~n~~~~qDi~sll~-~~---------~---~Y~T~EPfId~kyDirv 103 (203)
T PF02750_consen 50 RFPVVVKVGHAHAGMGK----------VKVDNQQDFQDIASLLA-IT---------K---DYATTEPFIDAKYDIRV 103 (203)
T ss_dssp SSSEEEEESS-STTTTE----------EEE-SHHHHHHHHHHHH-HH---------T---S-EEEEE---EEEEEEE
T ss_pred CCCEEEEEccccCceeE----------EEEccHHHHHHHHHHHH-hc---------C---ceEEeeccccceeEEEE
Confidence 38999998544444444 76656666655444332 11 0 36788999875556554
No 186
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=56.01 E-value=74 Score=29.59 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=44.5
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCC-CccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----e
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDE-KVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----C 379 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~-~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~ 379 (394)
..+.+..+++-.-.. ...++-+.+..+++++-++ +.| .+++|+ +.-|.+|.|+++++++.+.++ +
T Consensus 146 f~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~aI~-------~~~d~~a~g~~~a~~~~g~~ip~di~i 217 (273)
T cd06309 146 FAEVIKKYPNMKIVA-SQTGDFTRAKGKEVMEALLKAHGDDIDAVY-------AHNDEMALGAIQAIKAAGKKPGKDIKI 217 (273)
T ss_pred HHHHHHHCCCCEEee-ccCCcccHHHHHHHHHHHHHhCCCCccEEE-------ECCcHHHHHHHHHHHHcCCCCCCCeEE
Confidence 355666554211111 1234445555555555444 556 788888 445778999999999999872 6
Q ss_pred EEeecceE
Q 016159 380 FGFHSNYF 387 (394)
Q Consensus 380 ~~~~~~~~ 387 (394)
.+|-+...
T Consensus 218 ig~d~~~~ 225 (273)
T cd06309 218 VSIDGTKD 225 (273)
T ss_pred EecCCCHH
Confidence 67765543
No 187
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=55.98 E-value=36 Score=32.92 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=54.4
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CC-CccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DE-KVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~-~v~~i~vni~ggi~~~d~v 363 (394)
.+|+++++-.... -...+++..+|..+ .... .++-+.+.-+++++-+++ .+ ..++|| ...|.+
T Consensus 179 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~-~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~Ai~-------~~~D~~ 249 (327)
T TIGR02417 179 DEFWYLGAQPELSVSRDRLAGFRQALKQATLEV-EWVY-GGNYSRESGYQMFAKLCARLGRLPQALF-------TTSYTL 249 (327)
T ss_pred CeEEEEeCcccchhHHHHHHHHHHHHHHcCCCh-HhEE-eCCCChHHHHHHHHHHHhcCCCCCcEEE-------EcCcHH
Confidence 4888885332211 22456777776543 2222 344455556666655554 45 578988 456889
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
|.|+++++++++ ++ +.+|-++.+|
T Consensus 250 A~g~~~al~~~g-~vP~dvsvigfd~~~~~ 278 (327)
T TIGR02417 250 LEGVLDYMLERP-LLDSQLHLATFGDNYLL 278 (327)
T ss_pred HHHHHHHHHHcC-CCCCcceEEEECCchHH
Confidence 999999999998 54 6777665543
No 188
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.38 E-value=65 Score=29.98 Aligned_cols=86 Identities=20% Similarity=0.118 Sum_probs=49.1
Q ss_pred CCceeEEecChhH-----HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHH
Q 016159 291 DGEIGCMVNGAGL-----AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 291 ~G~Ig~~~nGaGl-----~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
.++|+++..-... .....+.+..+|.+.-.. ..++.+.+..++.++ ++.+.|++++|+. .-|..|
T Consensus 127 ~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 197 (274)
T cd06311 127 NGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKILDR--QYANWNRDDAFSVMQDLLTKFPKIDAVWA-------HDDDMA 197 (274)
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEEec--cCCCCcHHHHHHHHHHHHHhCCCcCEEEE-------CCCcHH
Confidence 3677777432221 122344555555332111 223445555555554 4445788999983 336689
Q ss_pred HHHHHHHHHcCCcc---eEEeecc
Q 016159 365 SGIVNAAKQVSALD---CFGFHSN 385 (394)
Q Consensus 365 ~gii~a~~~~~~~~---~~~~~~~ 385 (394)
.|+++++++.+.+. +.++-|+
T Consensus 198 ~g~~~al~~~g~~~~~~ivg~d~~ 221 (274)
T cd06311 198 VGVLAAIKQAGRTDIKFVVGGAGS 221 (274)
T ss_pred HHHHHHHHHcCCCCCceEEEeCCC
Confidence 99999999998753 5554443
No 189
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=55.14 E-value=55 Score=30.35 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=43.2
Q ss_pred HHHHHHcCCCccceee-cCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc----eEE
Q 016159 308 MDIIKLHGGTPANFLD-VGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD-~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~----~~~ 381 (394)
.+.+..+| .. ...+ ..++.+.+..+++++-++ +.+.+++|+ +..|.+|.+++++++++++++ +.+
T Consensus 146 ~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~~~~~~l~~~g~~~~di~ivg 216 (272)
T cd06301 146 EEVLAKYP-DI-KVVEEQTANWSRAEAMDLMENWLSSGGKIDAVV-------ANNDEMALGAIMALKAAGKSDKDVPVAG 216 (272)
T ss_pred HHHHHHCC-Cc-EEEecCCCCccHHHHHHHHHHHHHhCCCCCEEE-------ECCCchHHHHHHHHHHcCCCCCCcEEEe
Confidence 45555555 11 2222 234455565555555544 567889988 455789999999999998753 566
Q ss_pred eecc
Q 016159 382 FHSN 385 (394)
Q Consensus 382 ~~~~ 385 (394)
|-++
T Consensus 217 ~d~~ 220 (272)
T cd06301 217 IDGT 220 (272)
T ss_pred eCCC
Confidence 6544
No 190
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=54.87 E-value=27 Score=35.51 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCC---CccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcce
Q 016159 303 LAMATMDIIKLHGG---TPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDC 379 (394)
Q Consensus 303 l~m~t~D~i~~~gg---~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~~ 379 (394)
.+++++|-|+..|| ++-.++-.=+..+++.+.+..+-|+.+.+|++|| |+.|+..- +.++-.+++++.-.|
T Consensus 23 ~~~lAI~eINa~GGvlG~~le~v~~Dp~Sd~~~ya~~A~~Li~~d~V~~if----Gc~TSasR--KaVlPvvE~~~~LL~ 96 (363)
T PF13433_consen 23 GALLAIEEINAAGGVLGRQLEPVIYDPASDPSTYAEKAEKLIREDGVRAIF----GCYTSASR--KAVLPVVERHNALLF 96 (363)
T ss_dssp HHHHHHHHHHCTTTBTTB--EEEEE--TT-HHHHHHHHHHHHHHS---EEE----E--SHHHH--HHHHHHHHHCT-EEE
T ss_pred HHHHHHHHHHhcCCcCCeEEEEEEECCCCCHHHHHHHHHHHHHhCCccEEE----ecchhhhH--HHHHHHHHhcCceEE
Confidence 36788999999998 7788888888899999998777777777888766 88887655 778888877654333
No 191
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=54.35 E-value=52 Score=31.95 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=51.5
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCc-cceeecCCCCCHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTP-ANFLDVGGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~-aNflD~gG~a~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~v 363 (394)
++|+++...-+.. -...+.+..+|-+. ..+.- .++.+.+..++.+ +++.++|++++|| ...|.+
T Consensus 179 ~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nd~~ 250 (341)
T PRK10703 179 RDIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIV-QGDFEPESGYEAMQQILSQKHRPTAVF-------CGGDIM 250 (341)
T ss_pred CcEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeE-eCCCCHHHHHHHHHHHHhCCCCCCEEE-------ECCcHH
Confidence 5777775322211 12345666666432 12222 3444555555555 4455678899999 345788
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecc
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSN 385 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~ 385 (394)
|.|+++++++.+.++ +.+|-+.
T Consensus 251 a~g~~~al~~~g~~ip~dv~vvgfD~~ 277 (341)
T PRK10703 251 AMGAICAADEMGLRVPQDISVIGYDNV 277 (341)
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECCC
Confidence 999999999999763 6666554
No 192
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=54.02 E-value=35 Score=34.27 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcC----CCcc-EEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEEE
Q 016159 331 GQVVEAFKILTSD----EKVK-AILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFCL 389 (394)
Q Consensus 331 ~~~~~a~~~~l~~----~~v~-~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~~ 389 (394)
+-+.+-++.|+++ ++-+ ++|||-.||.+.-+. +++.+.+.+++.++++...+-|+|+..
T Consensus 233 ~l~~~m~~~ll~~~~~~~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~gi~i~r~~vG~~~TS 298 (331)
T PRK14481 233 EIAEELLEKILEDLKLVAGDEVLVLVNGMGATPLMELYIVYNDVAELLEERGVTVARSLVGNYMTS 298 (331)
T ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEEeeccccc
Confidence 3455566666652 2223 477799999887654 679999999999999999999999864
No 193
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=53.92 E-value=26 Score=34.30 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=42.6
Q ss_pred CCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 315 GGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 315 gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
|-...+|+|+ .+.+.+.++++..-.+..++ +++|.+||.+ +.|..|+++++++..+.
T Consensus 65 giPi~~~I~i---~dse~v~raI~~~~~~~~Id-Lii~TpGG~v---~AA~~I~~~l~~~~~~v 121 (285)
T PF01972_consen 65 GIPIYRYIDI---DDSEFVLRAIREAPKDKPID-LIIHTPGGLV---DAAEQIARALREHPAKV 121 (285)
T ss_pred ccccceeEcH---hhHHHHHHHHHhcCCCCceE-EEEECCCCcH---HHHHHHHHHHHhCCCCE
Confidence 3334567776 45678888888887776653 5569999987 55789999999988776
No 194
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=53.67 E-value=34 Score=34.04 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=38.1
Q ss_pred eeecCCCCCH---HHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcceEEeecceE
Q 016159 321 FLDVGGNASE---GQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNYF 387 (394)
Q Consensus 321 flD~gG~a~~---~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~~~~~~~~~~ 387 (394)
.+=.||+|.. +++.+.++-+.+-+.++.|=++.-.-+++...+-+.+++.+++.+...++++|+++.
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~ 209 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHA 209 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCCh
Confidence 4445566653 456666666666666654444332223344444456666777776555777777653
No 195
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=53.49 E-value=56 Score=30.10 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=41.7
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
..|.+..+|-......-.-++.+.+..++.++-+++.. +++|| ...|..|.|+++++++.++++ +++
T Consensus 138 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~av~-------~~~d~~a~gv~~al~~~g~~vp~dv~v~g 209 (265)
T cd06299 138 FRQACASLGLEVNEDLVVLGGYSQESGYAGATKLLDQG-ATAII-------AGDSMMTIGAIRAIHDAGLVIGEDISLIG 209 (265)
T ss_pred HHHHHHHCCCCCChHhEEecCcchHHHHHHHHHHHcCC-CCEEE-------EcCcHHHHHHHHHHHHhCCCCCcceeEEE
Confidence 34555555532211111223344455555565555543 77888 445678999999999998753 677
Q ss_pred eecc
Q 016159 382 FHSN 385 (394)
Q Consensus 382 ~~~~ 385 (394)
|-++
T Consensus 210 ~d~~ 213 (265)
T cd06299 210 FDDL 213 (265)
T ss_pred eCCH
Confidence 6554
No 196
>PRK09492 treR trehalose repressor; Provisional
Probab=52.72 E-value=44 Score=32.01 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=53.6
Q ss_pred ceeEEecCh-hHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHH
Q 016159 293 EIGCMVNGA-GLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (394)
Q Consensus 293 ~Ig~~~nGa-Gl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~ 365 (394)
+|+++..+. ... -...+++..+|..+- . .-+.-+.+.-+++++-+++ ++.++|| ...|.+|.
T Consensus 177 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~--~~~~~~~~~~~~~~~~~l~-~~~~ai~-------~~~D~~A~ 245 (315)
T PRK09492 177 HISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPV-A--ALGGLSMQSGYELVAKVLT-PETTALV-------CATDTLAL 245 (315)
T ss_pred eEEEEcCCcccchhHHHHHHHHHHHHHHcCCCce-e--ecCCCCchHHHHHHHHHhh-cCCCEEE-------EcCcHHHH
Confidence 788884321 111 134577777776542 1 2344455555566665555 5678888 44589999
Q ss_pred HHHHHHHHcCCcc--eEEeecceE
Q 016159 366 GIVNAAKQVSALD--CFGFHSNYF 387 (394)
Q Consensus 366 gii~a~~~~~~~~--~~~~~~~~~ 387 (394)
|+++++++.+++. +.+|-++.+
T Consensus 246 g~~~al~~~g~~disvig~d~~~~ 269 (315)
T PRK09492 246 GASKYLQEQGRDDIQVAGVGNTPL 269 (315)
T ss_pred HHHHHHHHcCCCceEEEeeCchhH
Confidence 9999999999865 667766544
No 197
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.67 E-value=56 Score=30.34 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=36.5
Q ss_pred CHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc--c-eEEeecceE
Q 016159 329 SEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL--D-CFGFHSNYF 387 (394)
Q Consensus 329 ~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~--~-~~~~~~~~~ 387 (394)
+.+..++++ +++.+.+++++|+ ...|.+|.|+++++++++++ + +++|-++..
T Consensus 166 ~~~~~~~~~~~~l~~~~~~~~i~-------~~~d~~a~g~~~~l~~~g~~~di~vig~d~~~~ 221 (273)
T cd06310 166 DYAKALDITEDLLTANPDLKGIF-------GANEGSAVGAARAVRQAGKAGKVKVVGFDASPE 221 (273)
T ss_pred CHHHHHHHHHHHHHhCCCceEEE-------ecCchhHHHHHHHHHhcCCCCCeEEEEeCCChH
Confidence 334444455 4444567888888 45678999999999999984 3 777776643
No 198
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=52.29 E-value=27 Score=34.98 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcC-----------CCcc-EEEEEccCCCCChHH--HHHHHHHHH-HHcCCcceEEeecceEE
Q 016159 331 GQVVEAFKILTSD-----------EKVK-AILVNIFGGIMKCDV--IASGIVNAA-KQVSALDCFGFHSNYFC 388 (394)
Q Consensus 331 ~~~~~a~~~~l~~-----------~~v~-~i~vni~ggi~~~d~--vA~gii~a~-~~~~~~~~~~~~~~~~~ 388 (394)
+-+.+-++.|+.+ ++-+ +++||-+||.+.-+. +++-+.+.+ ++.++++...+-|+|+.
T Consensus 219 elv~~ml~~ll~~~~~~r~~~~~~~gd~v~llVNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~T 291 (325)
T PF02733_consen 219 ELVDEMLDKLLDDLDPDRAFLPLKEGDEVALLVNNLGGTSQLELYIIAREVLEQLEEEKGIKVVRVYVGNFMT 291 (325)
T ss_dssp HHHHHHHHHHHHCCHCCEEEHTG-TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHH-HHTTEEEEEEEEE-SS-
T ss_pred HHHHHHHHHHhccCcccccccccCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCceEEEeEEEcccC
Confidence 4455566666554 2222 477799999777554 679999999 99999999999999874
No 199
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=52.18 E-value=54 Score=30.15 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCC-cc-eEEeecceE
Q 016159 325 GGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSA-LD-CFGFHSNYF 387 (394)
Q Consensus 325 gG~a~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~-~~-~~~~~~~~~ 387 (394)
.+..+.+..++++ +++.+.|..++|+ +..|.+|.+++++++++++ ++ +.++-++..
T Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~~~~~~l~~~g~~di~iig~d~~~~ 218 (268)
T cd06323 160 PADFDRAKGLNVMENILQAHPDIKGVF-------AQNDEMALGAIEALKAAGKDDVKVVGFDGTPD 218 (268)
T ss_pred cCCCCHHHHHHHHHHHHHHCCCcCEEE-------EcCCchHHHHHHHHHHcCCCCcEEEEeCCCHH
Confidence 3445545544444 5555667888887 5667899999999999998 44 777766543
No 200
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.94 E-value=95 Score=28.91 Aligned_cols=89 Identities=11% Similarity=0.020 Sum_probs=52.2
Q ss_pred CceeEEecChhH------HHHHHHHHHHcCCCc-----cceeec-CCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCC
Q 016159 292 GEIGCMVNGAGL------AMATMDIIKLHGGTP-----ANFLDV-GGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIM 358 (394)
Q Consensus 292 G~Ig~~~nGaGl------~m~t~D~i~~~gg~~-----aNflD~-gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~ 358 (394)
++|+++....+. .....+.+..+|... .+.+.. -++.+.+..++.++-++ +.|++++|+ .
T Consensus 124 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~ 196 (282)
T cd06318 124 MKIILLSGDAGNLVGQARRDGFLLGVSEAQLRKYGKTNFTIVAQGYGDWTREGGLKAMEDLLVAHPDINVVY-------S 196 (282)
T ss_pred ceEEEEECCCCCchHhHHHHhHHHHHhhCcccccccCCeEEEecCCCCCCHHHHHHHHHHHHHhCCCcCEEE-------E
Confidence 367666532221 122456666665321 123321 23445455555555444 567889998 3
Q ss_pred ChHHHHHHHHHHHHHcCCcc---eEEeecceE
Q 016159 359 KCDVIASGIVNAAKQVSALD---CFGFHSNYF 387 (394)
Q Consensus 359 ~~d~vA~gii~a~~~~~~~~---~~~~~~~~~ 387 (394)
.-|.+|.|+++++++.+... +.+|.++..
T Consensus 197 ~~d~~a~g~~~al~~~g~~~dv~vvg~d~~~~ 228 (282)
T cd06318 197 ENDDMALGAMRVLAEAGKTDDVKVAAADGQKE 228 (282)
T ss_pred CCcchHHHHHHHHHHcCCCCCeEEEecCCCHH
Confidence 44678999999999998743 788877643
No 201
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=51.54 E-value=31 Score=32.10 Aligned_cols=54 Identities=26% Similarity=0.236 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecceE
Q 016159 326 GNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNYF 387 (394)
Q Consensus 326 G~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~~ 387 (394)
++.+.+..+++++ ++.++|++++|+. ..|. |.|+++++++.+.++ +.+|-++.+
T Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~i~~-------~~d~-A~g~~~al~~~g~~~p~v~g~d~~~~ 221 (272)
T cd06300 165 GDWDQAVAQKAVADFLASNPDVDGIWT-------QGGD-AVGAVQAFEQAGRDIPPVTGEDENGF 221 (272)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcCEEEe-------cCCC-cHHHHHHHHHcCCCCcEEEeeCCcHH
Confidence 4445555555544 4456788999883 2455 899999999999875 666655543
No 202
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.31 E-value=50 Score=30.58 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 328 ASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 328 a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
.+.+..+++++-+++ .+.+++|| ...|.+|.|+++++++.+.++ +.+|-++.+|
T Consensus 154 ~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~~~~ 213 (263)
T cd06280 154 PTAEAAEAALAAWLAAPERPEALV-------ASNGLLLLGALRAVRAAGLRIPQDLALAGFDNDPWT 213 (263)
T ss_pred cCHHHHHHHHHHHhcCCCCCcEEE-------ECCcHHHHHHHHHHHHcCCCCCCcEEEEEeCChhHH
Confidence 345665666655554 46788998 456789999999999999764 7777666544
No 203
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=50.19 E-value=47 Score=31.02 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=27.3
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEE--EccCC
Q 016159 324 VGGNASEGQVVEAFKILTSDEKVKAILV--NIFGG 356 (394)
Q Consensus 324 ~gG~a~~~~~~~a~~~~l~~~~v~~i~v--ni~gg 356 (394)
-++..+.+.+.++++-+.+||+|++|++ |.+||
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg 59 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG 59 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC
Confidence 3456778889999999999999999999 56665
No 204
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=49.82 E-value=48 Score=31.98 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=44.2
Q ss_pred EEccCCceeEEecChhHHHHHHHHHHH---cCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEE-EccCCC
Q 016159 287 YIGLDGEIGCMVNGAGLAMATMDIIKL---HGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILV-NIFGGI 357 (394)
Q Consensus 287 y~~l~G~Ig~~~nGaGl~m~t~D~i~~---~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~v-ni~ggi 357 (394)
++..+|.||+++--+= +|..++.. -|.--.-.+-+||+|- ...+-.++++.|+||+.++|++ -=.||-
T Consensus 172 ~Ihk~G~IGIVSRSGT---LTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~ 244 (329)
T KOG1255|consen 172 HIHKRGKIGIVSRSGT---LTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGS 244 (329)
T ss_pred ccccCCeeEEEecCCc---eeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCCh
Confidence 4556788888877554 35555543 2322334566777775 4557779999999999999664 334543
No 205
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=49.27 E-value=47 Score=30.64 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcC
Q 016159 328 ASEGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVS 375 (394)
Q Consensus 328 a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~ 375 (394)
.+.+.+.++++-+.+||++++|++ |.+||-.. -++.|.+++++++
T Consensus 13 ~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~---~~~~l~~~i~~~~ 59 (207)
T TIGR00706 13 VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVV---ASEEIYEKLKKLK 59 (207)
T ss_pred cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHH---HHHHHHHHHHHhc
Confidence 456888999999999999999988 65665332 1255666777765
No 206
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=49.26 E-value=67 Score=32.80 Aligned_cols=101 Identities=24% Similarity=0.278 Sum_probs=59.9
Q ss_pred cCCCHHHHHHHHHHcCCCC----CCceee---------------CCHHHHHHHH----HHhCCCCCc-EEEEEeeecCCC
Q 016159 28 LNIHEYQGAELMAKYGINV----PKGLAV---------------ASVDEVKKAI----QDAFPDHKE-LVVKSQILAGGR 83 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpv----p~~~~~---------------~s~eea~~~a----~~lg~~~~P-vVvK~q~~~ggR 83 (394)
...++.-||++-+..||.- |-+..| +..|...... ++.|-...| |+||++. |.=
T Consensus 192 F~~Y~~va~eF~~~~~IDPWlInp~f~~c~~vdF~~~~G~e~lA~~Vd~~L~kir~KY~eYgI~e~PfViVKADa--GTY 269 (403)
T TIGR02049 192 FEAYQEVASEFAKLIGIDPWLINPYFEKCDGIDFDDREGEDALATAVDQVLSKTQKKYEEYGIHTQPYVIVKADA--GTY 269 (403)
T ss_pred hHHHHHHHHHHHHHhCCCcccccHhhhccCCcCCCccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCC--CCC
Confidence 4467778899999888862 222222 2233322222 233422346 6789985 322
Q ss_pred CCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEE
Q 016159 84 GLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144 (394)
Q Consensus 84 gK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~y 144 (394)
|- ||..+ |.+|+...-++-..+-. ....|..|+.|+|||-+. ..|.+
T Consensus 270 GM---------GImtv~~~~ev~~LNrK~RnKM~----~~Keg~~V~~VIiQEGV~-T~E~~ 317 (403)
T TIGR02049 270 GM---------GIMTATSGEEVLGLNRKERNKMA----KVKEGLEVSEVIIQEGVY-TFEMF 317 (403)
T ss_pred Cc---------eEEEecCHHHHHHhhhhhhhhcc----cccCCCccceEEEecCcc-eeeee
Confidence 32 78888 99999876555433221 123688999999999886 44543
No 207
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=48.83 E-value=1.2e+02 Score=27.23 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEE---EccCCCCChHHHHHHHHHHHHHcC----
Q 016159 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILV---NIFGGIMKCDVIASGIVNAAKQVS---- 375 (394)
Q Consensus 303 l~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~v---ni~ggi~~~d~vA~gii~a~~~~~---- 375 (394)
|---+.|.+..+|.+..|. |+--=|-.-.+--+.+.+.+..+.++|+. -|=|+...+|.|++.+.+.+.+..
T Consensus 28 Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V~~~v~~gl~~vsl~~~ 106 (158)
T PRK12419 28 ARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFVAQAVIDGLMRVQLDTE 106 (158)
T ss_pred HHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHHHHHHHHHHHHHHhccC
Confidence 4444678999999876765 55555555666667777777778999887 555666667777766666666654
Q ss_pred CcceEEeec
Q 016159 376 ALDCFGFHS 384 (394)
Q Consensus 376 ~~~~~~~~~ 384 (394)
+.+.|++=.
T Consensus 107 ~PV~fGVLT 115 (158)
T PRK12419 107 VPVFSVVLT 115 (158)
T ss_pred CCEEEEecC
Confidence 444777643
No 208
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.32 E-value=61 Score=29.89 Aligned_cols=53 Identities=23% Similarity=0.140 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 329 SEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 329 ~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
+.+..+++++-++ +.|.+++|+. .-|.+|.+++++++++++++ +++|-+..+|
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~aii~-------~~~~~a~~~~~~l~~~g~~ip~di~vi~~d~~~~~ 217 (265)
T cd06290 159 EEESGLEAVEELLQRGPDFTAIFA-------ANDQTAYGARLALYRRGLRVPEDVSLIGFDDLPLS 217 (265)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEE-------cCcHHHHHHHHHHHHcCCCCCcceEEeeecCchHH
Confidence 3444445555555 4677899883 35678999999999998753 6776654433
No 209
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=47.62 E-value=66 Score=27.12 Aligned_cols=59 Identities=27% Similarity=0.387 Sum_probs=45.2
Q ss_pred ccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeec
Q 016159 318 PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHS 384 (394)
Q Consensus 318 ~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~ 384 (394)
--||+-+--+.|.+++.+||+-.++-+.+-.||||.| +|+-|-..+..+.-.+ ++-|.|
T Consensus 35 ~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLInq~--------~Ae~iR~~vD~h~~~vPAvLeIpS 95 (121)
T KOG3432|consen 35 EPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILINQF--------IAEMIRDRVDAHTQAVPAVLEIPS 95 (121)
T ss_pred CCCEEEEeccCCHHHHHHHHHhhccccCeEEEEEhHH--------HHHHHHHHHHhccccCCeeEEecC
Confidence 4599999999999999999999999888888888754 6677766666654333 555543
No 210
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=47.37 E-value=54 Score=31.37 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=42.7
Q ss_pred HHHHHHcCCCccceeec-CCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc--c-eEEe
Q 016159 308 MDIIKLHGGTPANFLDV-GGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL--D-CFGF 382 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~-gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~--~-~~~~ 382 (394)
.+.+..+|..+.+..++ -++-+.+..+++++ ++.++|++++||. ..|.+|.++++++++.+.+ . +.+|
T Consensus 146 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~D~~A~g~~~al~~~g~~~dv~vvG~ 218 (298)
T cd06302 146 KAYQKEKYYPMLELVDRQYGDDDADKSYQTAQELLKAYPDLKGIIG-------PTSVGIPGAARAVEEAGLKGKVAVTGL 218 (298)
T ss_pred HHHHhhcCCCCeEEeCcccCCCCHHHHHHHHHHHHHhCCCceEEEE-------CCCcchhHHHHHHHhcCCCCCEEEEEe
Confidence 45555565222333222 34445555555554 4456788899883 3467899999999999874 2 5565
Q ss_pred ec
Q 016159 383 HS 384 (394)
Q Consensus 383 ~~ 384 (394)
-+
T Consensus 219 D~ 220 (298)
T cd06302 219 GL 220 (298)
T ss_pred CC
Confidence 44
No 211
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=46.45 E-value=86 Score=28.85 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=41.0
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
.+.+..+|.+.....-.-++.+.+...++++-++ +.+..++|+. ..|.+|.++++++++.+.++ +++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~-------~~d~~a~~~~~~~~~~g~~~p~~i~vig 213 (270)
T cd01545 141 RDALAEAGLPLDPELVAQGDFTFESGLEAAEALLALPDRPTAIFA-------SNDDMAAGVLAVAHRRGLRVPDDLSVVG 213 (270)
T ss_pred HHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHhCCCCCCEEEE-------cCcHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 3445555544322111223334344344444444 4577888882 35688999999999998753 566
Q ss_pred eecc
Q 016159 382 FHSN 385 (394)
Q Consensus 382 ~~~~ 385 (394)
|-++
T Consensus 214 ~d~~ 217 (270)
T cd01545 214 FDDT 217 (270)
T ss_pred ECCh
Confidence 6554
No 212
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=46.09 E-value=49 Score=33.17 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcC----CCcc-EEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEEE
Q 016159 331 GQVVEAFKILTSD----EKVK-AILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFCL 389 (394)
Q Consensus 331 ~~~~~a~~~~l~~----~~v~-~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~~ 389 (394)
+-+.+.++.|++| ++-+ +++||-.||.+.-+. +++.+.+.+++.++++...+-|||+..
T Consensus 230 elv~~l~~~ll~~~~~~~gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~gi~v~r~~vG~~~TS 295 (326)
T TIGR02362 230 HLAVELVNKLKLKFRWQADDHYAVLVNNLGGTTPMEQMVFNNDVHELLALEALHLPFIKVGTFLTS 295 (326)
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEeEeecccCc
Confidence 4455667777663 2223 467799999777554 569999999999999999999999864
No 213
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=45.42 E-value=72 Score=32.60 Aligned_cols=79 Identities=20% Similarity=0.147 Sum_probs=52.0
Q ss_pred eEEecChhHHHH-HHHHHHHcCCC-----cc---------------ceee-----cCCCCCHHHHHHHHHHHhcCCCccE
Q 016159 295 GCMVNGAGLAMA-TMDIIKLHGGT-----PA---------------NFLD-----VGGNASEGQVVEAFKILTSDEKVKA 348 (394)
Q Consensus 295 g~~~nGaGl~m~-t~D~i~~~gg~-----~a---------------NflD-----~gG~a~~~~~~~a~~~~l~~~~v~~ 348 (394)
=++++|+--++. ++.++..-|-+ |. .+++ -+-.++.+.+.++++ +++|+
T Consensus 92 iivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~-----~ktk~ 166 (393)
T COG0436 92 IIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT-----PKTKA 166 (393)
T ss_pred EEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC-----ccceE
Confidence 355666665554 77777766643 21 2333 366777777776543 37899
Q ss_pred EEEEc---cCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 349 ILVNI---FGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 349 i~vni---~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
|+||. |.|.+=..+--+.|++..+++++-+
T Consensus 167 i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~i 199 (393)
T COG0436 167 IILNSPNNPTGAVYSKEELKAIVELAREHDIII 199 (393)
T ss_pred EEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEE
Confidence 99955 4676667777788999999977544
No 214
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=44.72 E-value=2.3e+02 Score=25.91 Aligned_cols=94 Identities=23% Similarity=0.291 Sum_probs=62.3
Q ss_pred EccCCceeEEecChhHHHHHHHHHHHcCCCcc---------------ceeecCCCCCHHHHHHHHHH-------------
Q 016159 288 IGLDGEIGCMVNGAGLAMATMDIIKLHGGTPA---------------NFLDVGGNASEGQVVEAFKI------------- 339 (394)
Q Consensus 288 ~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~a---------------NflD~gG~a~~~~~~~a~~~------------- 339 (394)
..++|.+-++..|-=--=.++|++.-|-|-|- -+.-.|+.+...++.-+-++
T Consensus 15 k~PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~Ga~~GEyKv~Fi~rl~~~~f~r~V~a~p 94 (217)
T COG4015 15 KKPRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRLGAKVGEYKVDFIKRLGRVHFGRRVEAFP 94 (217)
T ss_pred cCCCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHhCCCcchhHHHHHHHhCcCCCCceeeccc
Confidence 56789998888876334467899987766442 34446666666665544333
Q ss_pred --HhcC----CCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEee
Q 016159 340 --LTSD----EKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFH 383 (394)
Q Consensus 340 --~l~~----~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~ 383 (394)
+.+| =.-+++.|-|-||-|-+. ..+|++..++.+++- +|+|-
T Consensus 95 E~it~dNlhll~gDVvvi~IAGGdT~Pv--Taaii~ya~~rG~~TisT~GVFGig 147 (217)
T COG4015 95 ENITKDNLHLLKGDVVVICIAGGDTIPV--TAAIINYAKERGIKTISTNGVFGIG 147 (217)
T ss_pred ccccccchhhhcCCEEEEEecCCCcchh--HHHHHHHHHHcCceEeecCceeecc
Confidence 1221 012678888999877654 378999999998766 88874
No 215
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=44.58 E-value=66 Score=33.68 Aligned_cols=50 Identities=28% Similarity=0.159 Sum_probs=34.6
Q ss_pred CcEEEEEeeecCCCCCCcccCCCcccEEEC---CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEE
Q 016159 70 KELVVKSQILAGGRGLGTFKSGLKGGVHIV---KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYF 145 (394)
Q Consensus 70 ~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~---s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~yl 145 (394)
-.+|+||.-.-|| + ||.++ ++++=+++.++.++ ++.++||++.+.+|-+.
T Consensus 339 ~~lVLKP~D~Ygg--~---------GV~~G~e~~~eeW~~~l~~a~~---------------~~yilQe~v~~~~~~~~ 391 (445)
T PF14403_consen 339 DRLVLKPNDEYGG--K---------GVYIGWETSPEEWEAALEEAAR---------------EPYILQEYVRPPREPMP 391 (445)
T ss_pred hcEEeccccccCC--C---------CeEECCcCCHHHHHHHHHHHhc---------------CCcEEEEEecCCccccc
Confidence 4699999765553 3 68888 88876666666532 36888998876555444
No 216
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=43.73 E-value=76 Score=27.72 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 327 ~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
..+.+.+.+.++-+.+++.+ .+.||.+||-..+ +..|.+.++..+..+
T Consensus 14 ~~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~---~~~i~~~i~~~~~pv 61 (160)
T cd07016 14 GVTAKEFKDALDALGDDSDI-TVRINSPGGDVFA---GLAIYNALKRHKGKV 61 (160)
T ss_pred ccCHHHHHHHHHhccCCCCE-EEEEECCCCCHHH---HHHHHHHHHhcCCCE
Confidence 36788899998888777332 4777999997543 578888888876544
No 217
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=43.64 E-value=63 Score=32.48 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcC----CCcc-EEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEEE
Q 016159 331 GQVVEAFKILTSD----EKVK-AILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFCL 389 (394)
Q Consensus 331 ~~~~~a~~~~l~~----~~v~-~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~~ 389 (394)
+-+.+-++.|+.| ++-+ +++||-.||.+.-+. +++.+.+.+++.++++...+-|+|++.
T Consensus 234 ~l~~~l~~~l~~~~~~~~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~gi~v~r~~vG~~~TS 299 (329)
T TIGR02363 234 EIADELLDKLLDDLGLQSGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQRGVNVARTLVGNYMTS 299 (329)
T ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeccccc
Confidence 3455566666652 2222 477799999887655 569999999999999999999999864
No 218
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.55 E-value=77 Score=29.03 Aligned_cols=54 Identities=28% Similarity=0.297 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHH-hcCCCccEEEEEccCCCCChHHHHHHHHHHHHHc-CCc----c-eEEeecceE
Q 016159 327 NASEGQVVEAFKIL-TSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV-SAL----D-CFGFHSNYF 387 (394)
Q Consensus 327 ~a~~~~~~~a~~~~-l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~-~~~----~-~~~~~~~~~ 387 (394)
+.+.+..+++++-+ .+.|.+++|+. ..|..|.++++++++. +.+ . +++|.++..
T Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~i~~-------~~~~~a~~~~~~l~~~~~~~~p~di~i~~~d~~~~ 215 (266)
T cd06278 155 DYSYEGGYEAARRLLASRPRPDAIFC-------ANDLLAIGVMDAARQEGGLRVPEDVSVIGFDDIPM 215 (266)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEE-------cCcHHHHHHHHHHHHhcCCCCccceEEEEeCChhH
Confidence 33445555555544 45688999983 3567899999999986 443 2 788877653
No 219
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=43.51 E-value=81 Score=29.55 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=40.9
Q ss_pred HHHHHcCCCccceeecC-CCCCHHHHHHH-HHHHhcCCCcc--EEEEEccCCCCChHHHHHHHHHHHHHcCCcc----eE
Q 016159 309 DIIKLHGGTPANFLDVG-GNASEGQVVEA-FKILTSDEKVK--AILVNIFGGIMKCDVIASGIVNAAKQVSALD----CF 380 (394)
Q Consensus 309 D~i~~~gg~~aNflD~g-G~a~~~~~~~a-~~~~l~~~~v~--~i~vni~ggi~~~d~vA~gii~a~~~~~~~~----~~ 380 (394)
+.+..+|....+.++.- ++.+.+.-+++ -+++.+.|.++ +|+ ...|.+|.|+++++++.++++ +.
T Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-------~~~d~~a~g~~~al~~~g~~~~di~vi 226 (289)
T cd01540 154 EALKAPGFPEANIFQAPQKTTDTEGAFDAAASTLTKNPNVKNWIIY-------GLNDETVLGAVRATEQSGIAAADVIGV 226 (289)
T ss_pred HHHhcCCCCcceEecccccCcchhhHHHHHHHHHHhCCCcCeeEEE-------eCCcHHHHHHHHHHHHcCCCCcceEEE
Confidence 44444443323344432 22333444444 44555678788 454 345778999999999998754 56
Q ss_pred Eeecce
Q 016159 381 GFHSNY 386 (394)
Q Consensus 381 ~~~~~~ 386 (394)
+|-++.
T Consensus 227 g~d~~~ 232 (289)
T cd01540 227 GINGSD 232 (289)
T ss_pred ecCCch
Confidence 766653
No 220
>PRK00208 thiG thiazole synthase; Reviewed
Probab=43.06 E-value=34 Score=32.96 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=51.2
Q ss_pred CCCeEEccCC-ceeEEecChhHHHHHHHHHHHcCCCccceeecCCC-CCHHHHHHHHHHHhcCCCccEEEEEccCCCCC-
Q 016159 283 ADLNYIGLDG-EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN-ASEGQVVEAFKILTSDEKVKAILVNIFGGIMK- 359 (394)
Q Consensus 283 ~~l~y~~l~G-~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~-a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~- 359 (394)
.|-.++.+-| -|| .|- ++.+.|.|...-..+..++=.+|+ -+++.+++|++ -+.++++||. +|++
T Consensus 143 ~G~~~vmPlg~pIG---sg~--gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame-----lGAdgVlV~S--AItka 210 (250)
T PRK00208 143 AGCAAVMPLGAPIG---SGL--GLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAME-----LGADAVLLNT--AIAVA 210 (250)
T ss_pred cCCCEeCCCCcCCC---CCC--CCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-----cCCCEEEECh--HhhCC
Confidence 4555664433 444 233 344455555443334445555555 46999999998 3688999764 8888
Q ss_pred --hHHHHHHHHHHHHH
Q 016159 360 --CDVIASGIVNAAKQ 373 (394)
Q Consensus 360 --~d~vA~gii~a~~~ 373 (394)
...+|+.+.+|++.
T Consensus 211 ~dP~~ma~af~~Av~a 226 (250)
T PRK00208 211 GDPVAMARAFKLAVEA 226 (250)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 88899999999874
No 221
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=42.84 E-value=34 Score=32.95 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=52.1
Q ss_pred CCCeEEccCC-ceeEEecChhHHHHHHHHHHHcCCCccceeecCCC-CCHHHHHHHHHHHhcCCCccEEEEEccCCCCC-
Q 016159 283 ADLNYIGLDG-EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN-ASEGQVVEAFKILTSDEKVKAILVNIFGGIMK- 359 (394)
Q Consensus 283 ~~l~y~~l~G-~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~-a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~- 359 (394)
.|-.++.+-| -|| .|.++.+.|.|...-..+-.++=.+|+ -+++.+++|++ =+.++++||. +|++
T Consensus 143 ~G~~~vmPlg~pIG-----sg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame-----lGAdgVlV~S--AIt~a 210 (248)
T cd04728 143 AGCAAVMPLGSPIG-----SGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-----LGADAVLLNT--AIAKA 210 (248)
T ss_pred cCCCEeCCCCcCCC-----CCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH-----cCCCEEEECh--HhcCC
Confidence 4555664433 444 233444466665443334456666555 46899999998 4688999764 8888
Q ss_pred --hHHHHHHHHHHHHH
Q 016159 360 --CDVIASGIVNAAKQ 373 (394)
Q Consensus 360 --~d~vA~gii~a~~~ 373 (394)
...+|+.+..|++.
T Consensus 211 ~dP~~ma~af~~Av~a 226 (248)
T cd04728 211 KDPVAMARAFKLAVEA 226 (248)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 88899999998864
No 222
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=42.65 E-value=1.1e+02 Score=28.42 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred CCHHHHHHH-HHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecc
Q 016159 328 ASEGQVVEA-FKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSN 385 (394)
Q Consensus 328 a~~~~~~~a-~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~ 385 (394)
.+.+..+.. -+++.+.|.+++||. ..|.+|.|+++++++.+.++ .++|-++
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~ai~~-------~~~~~a~g~~~~l~~~g~~ip~~i~ii~~d~~ 224 (275)
T cd06295 168 FTEESGRAAMRALLERGPDFDAVFA-------ASDLMALGALRALREAGRRVPEDVAVVGFDDI 224 (275)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEE-------CCcHHHHHHHHHHHHhCCCCccceEEEeeCCc
Confidence 333444444 445556788999983 24678999999999998752 5666544
No 223
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=42.38 E-value=1.2e+02 Score=27.44 Aligned_cols=50 Identities=30% Similarity=0.391 Sum_probs=34.1
Q ss_pred HHHHHH-HHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc---c--eEEeecce
Q 016159 330 EGQVVE-AFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL---D--CFGFHSNY 386 (394)
Q Consensus 330 ~~~~~~-a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~---~--~~~~~~~~ 386 (394)
.+..+. +.+++.++|++++|+. ..|..|.++++++++.+.+ . ++++-++.
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~i~~-------~~~~~a~~~~~al~~~g~~~~~~i~i~~~d~~~ 216 (264)
T cd06267 161 EESGYEAARELLASGERPTAIFA-------ANDLMAIGALRALRELGLRVPEDVSVVGFDDIP 216 (264)
T ss_pred hhhHHHHHHHHHhcCCCCcEEEE-------cCcHHHHHHHHHHHHhCCCCCCceEEEeeCCCc
Confidence 344444 4566778888999883 2345778999999998875 2 67765544
No 224
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=41.91 E-value=85 Score=29.05 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCccEEEE--EccCC
Q 016159 325 GGNASEGQVVEAFKILTSDEKVKAILV--NIFGG 356 (394)
Q Consensus 325 gG~a~~~~~~~a~~~~l~~~~v~~i~v--ni~gg 356 (394)
.+....+.+.++++-+..||++++|++ |.+||
T Consensus 22 ~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg 55 (214)
T cd07022 22 SGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGG 55 (214)
T ss_pred CCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCC
Confidence 445677899999999999999999998 55655
No 225
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=41.26 E-value=84 Score=29.35 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHH-HhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc
Q 016159 328 ASEGQVVEAFKI-LTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL 377 (394)
Q Consensus 328 a~~~~~~~a~~~-~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~ 377 (394)
.+.+..+++++- +.+.|++++|+ .. |.+|.++++++++.++.
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~i~-------~~-d~~a~~~~~~l~~~g~p 208 (268)
T cd06306 166 TGKEVQRKLVEEALEAHPDIDYIV-------GS-AVAAEAAVGILRQRGLT 208 (268)
T ss_pred ccHHHHHHHHHHHHHhCCCcCEEe-------ec-chhhhHHHHHHHhcCCC
Confidence 344555555554 44667889887 22 78899999999999863
No 226
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=40.59 E-value=82 Score=29.82 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=35.5
Q ss_pred CCCHHHHHHHH-HHHhcCC-CccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc---eEEeecc
Q 016159 327 NASEGQVVEAF-KILTSDE-KVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---CFGFHSN 385 (394)
Q Consensus 327 ~a~~~~~~~a~-~~~l~~~-~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---~~~~~~~ 385 (394)
+-+.+.-++++ +++.++| +.++|+ +..|.+|.++++++++.+.+. +.+|-++
T Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~I~-------~~~d~~a~g~~~al~~~g~~~dv~vvg~d~~ 226 (288)
T cd01538 170 DWDPETAQKRMENALTANYNKVDGVL-------AANDGTAGGAIAALKAAGLAGKPPVTGQDAE 226 (288)
T ss_pred CCCHHHHHHHHHHHHHhCCCCccEEE-------eCCcHHHHHHHHHHHHcCCCCCceEEecCCC
Confidence 33444444444 4455567 788888 446889999999999998864 5555554
No 227
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=39.21 E-value=2.6e+02 Score=25.04 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=49.4
Q ss_pred CCceeEEecChh------HHHHHHHHHHHcC-CCccceeecCCCCCHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHH
Q 016159 291 DGEIGCMVNGAG------LAMATMDIIKLHG-GTPANFLDVGGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDV 362 (394)
Q Consensus 291 ~G~Ig~~~nGaG------l~m~t~D~i~~~g-g~~aNflD~gG~a~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~ 362 (394)
..+|+++.+... ..-...+.+..+| .+.. +.. -++.+.+...+.+ +++.+.|+++++|+ ..|.
T Consensus 118 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~-------~~~~ 188 (264)
T cd01537 118 HRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIV-LVQ-EGDWDAEKGYQAAEELLTAHPDPTAIFA-------ANDD 188 (264)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChh-hhc-cCCCCHHHHHHHHHHHHhcCCCCCEEEE-------cCcH
Confidence 358888765432 1223345565565 2222 222 2334555555544 45555677899883 2345
Q ss_pred HHHHHHHHHHHcCCc----c-eEEeecc
Q 016159 363 IASGIVNAAKQVSAL----D-CFGFHSN 385 (394)
Q Consensus 363 vA~gii~a~~~~~~~----~-~~~~~~~ 385 (394)
.|.++++++++.+.+ + .+++.++
T Consensus 189 ~a~~~~~~~~~~g~~i~~~i~i~~~d~~ 216 (264)
T cd01537 189 MALGALRALREAGLRVPDDISVIGFDGT 216 (264)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEeecCc
Confidence 788899999999885 2 5666554
No 228
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.72 E-value=1.1e+02 Score=28.70 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159 326 GNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY 386 (394)
Q Consensus 326 G~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~ 386 (394)
++.+.+..+++++-+++ .|.+++|| ...|.+|.|+++++++.+.+. +.+|-++.
T Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nd~~a~g~~~al~~~g~~di~vvgfd~~~ 219 (272)
T cd06313 163 ANWDVSKAARIWETWLTKYPQLDGAF-------CHNDSMALAAYQIMKAAGRTKIVIGGVDGDP 219 (272)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCEEE-------ECCCcHHHHHHHHHHHcCCCceEEEeecCCH
Confidence 44555666666666654 57889988 445779999999999998732 66666554
No 229
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.65 E-value=94 Score=30.60 Aligned_cols=35 Identities=9% Similarity=0.250 Sum_probs=30.1
Q ss_pred ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (394)
Q Consensus 320 NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ 354 (394)
--..+..+.+.+.+.+.++-+.+||+|.+|+|-.|
T Consensus 64 ~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlP 98 (286)
T PRK14184 64 EAFRLPADTTQEELEDLIAELNARPDIDGILLQLP 98 (286)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecC
Confidence 34677888999999999999999999999999665
No 230
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.52 E-value=56 Score=30.43 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHH-hcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc---eEEeecceE
Q 016159 329 SEGQVVEAFKIL-TSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---CFGFHSNYF 387 (394)
Q Consensus 329 ~~~~~~~a~~~~-l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---~~~~~~~~~ 387 (394)
+.+..+++++-+ .+.|++++|+ +.+|.+|.|+++++++++++. .++|-++-.
T Consensus 166 ~~~~~~~~~~~~l~~~~~~~aI~-------~~~d~~a~g~~~al~~~g~~~di~vvg~d~~~~ 221 (271)
T cd06312 166 DPTEVASRIAAYLRANPDVDAVL-------TLGAPSAAPAAKALKQAGLKGKVKLGGFDLSPA 221 (271)
T ss_pred CHHHHHHHHHHHHHhCCCccEEE-------EeCCccchHHHHHHHhcCCCCCeEEEEecCCHH
Confidence 345555555544 4568889998 445778999999999998742 667766543
No 231
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=38.28 E-value=68 Score=34.77 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=36.2
Q ss_pred EEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEEEE
Q 016159 348 AILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFCLF 390 (394)
Q Consensus 348 ~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~~~ 390 (394)
++|||-.||.+.-.. +++.+.+.+++.++++...+-|||++.+
T Consensus 264 ~vlvN~LG~t~~~El~i~~~~v~~~l~~~gi~v~~~~vG~~~TSl 308 (584)
T PTZ00375 264 ALLVNNLGSTTDLEMSILAHHALRQLAQAGLTVVGVHSGRLMTSL 308 (584)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEEeeecccccc
Confidence 477799999777554 5799999999999999999999998643
No 232
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.22 E-value=1e+02 Score=30.34 Aligned_cols=36 Identities=17% Similarity=0.396 Sum_probs=29.6
Q ss_pred cceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (394)
Q Consensus 319 aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ 354 (394)
..-.++..+.+.+.+.+.++-+..|++|.+|+|-.|
T Consensus 64 ~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 99 (284)
T PRK14190 64 SELYEFPADITEEELLALIDRLNADPRINGILVQLP 99 (284)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 345667888888889999999999999999998655
No 233
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=38.03 E-value=2.3e+02 Score=28.38 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEE-EccCCCCChHHHHHHHHHHHHH-cCCcceE
Q 016159 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILV-NIFGGIMKCDVIASGIVNAAKQ-VSALDCF 380 (394)
Q Consensus 303 l~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~v-ni~ggi~~~d~vA~gii~a~~~-~~~~~~~ 380 (394)
.+.-..+.++..|.+..-++-..+..+++.+.+..+.+.+- +++.|-+ ..+|..+ ++++++ +++++++ ++.+.-+
T Consensus 116 ~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~-Ga~~i~i~DT~G~~~-P~~v~~-~v~~l~~~l~~~i~i 192 (337)
T PRK08195 116 VSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESY-GAQCVYVVDSAGALL-PEDVRD-RVRALRAALKPDTQV 192 (337)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhC-CCCEEEeCCCCCCCC-HHHHHH-HHHHHHHhcCCCCeE
Confidence 45666677777777655444455667777777777766653 3455444 6666544 344443 4555554 3333445
Q ss_pred Eeec
Q 016159 381 GFHS 384 (394)
Q Consensus 381 ~~~~ 384 (394)
+||+
T Consensus 193 g~H~ 196 (337)
T PRK08195 193 GFHG 196 (337)
T ss_pred EEEe
Confidence 5554
No 234
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=37.86 E-value=64 Score=26.13 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCC-------CccEEEEEccCCCCC-hHHHHHHHHHHHHHc
Q 016159 330 EGQVVEAFKILTSDE-------KVKAILVNIFGGIMK-CDVIASGIVNAAKQV 374 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~-------~v~~i~vni~ggi~~-~d~vA~gii~a~~~~ 374 (394)
..+..+|++-.++.| +.++++||+.||-.- -.++ +.+++.+++.
T Consensus 13 ~~r~~~Av~~Al~spLl~~~i~~A~~vLvni~~~~d~~l~ev-~~~~~~i~~~ 64 (95)
T PF12327_consen 13 ENRAEEAVEQALNSPLLDVDIKGAKGVLVNITGGPDLSLSEV-NEAMEIIREK 64 (95)
T ss_dssp TTHHHHHHHHHHTSTTSTS-GGG-SEEEEEEEE-TTS-HHHH-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCccccCChHHhceEEEEEEcCCCCCHHHH-HHHHHHHHHH
Confidence 456666666666554 667899999998533 3444 4456666664
No 235
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=37.82 E-value=2.1e+02 Score=27.08 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc---eEEeec
Q 016159 326 GNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---CFGFHS 384 (394)
Q Consensus 326 G~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---~~~~~~ 384 (394)
++.+.+..+++++ ++.++|++++|+. ..|..|.++++++++.+.+. +.+|-+
T Consensus 165 ~~~~~~~~~~~~~~~L~~~~~~~ai~~-------~~d~~a~ga~~al~~~g~~~~i~vvg~d~ 220 (302)
T TIGR02637 165 GDDDAQKSYQEAQGLLKSYPNLKGIIA-------PTTVGIKAAAQAVSDAKLIGKVKLTGLGL 220 (302)
T ss_pred CCchHHHHHHHHHHHHHhCCCccEEEe-------CCCchHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 4445566565554 4456789999994 23678899999999987642 555543
No 236
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=37.64 E-value=87 Score=28.41 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCcceEEee
Q 016159 330 EGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSALDCFGFH 383 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~~~~~~~ 383 (394)
.+.+.++++-..+++ ++.|++ |.+||...+ ++.|.+++++.+..+.-.+.
T Consensus 15 ~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~---~~~I~~~l~~~~~pvva~V~ 66 (178)
T cd07021 15 AAFVERALKEAKEEG-ADAVVLDIDTPGGRVDS---ALEIVDLILNSPIPTIAYVN 66 (178)
T ss_pred HHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHH---HHHHHHHHHhCCCCEEEEEC
Confidence 445677888887776 677555 999998643 46778888887765543333
No 237
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.47 E-value=1e+02 Score=30.50 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=28.4
Q ss_pred eeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (394)
Q Consensus 321 flD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ 354 (394)
-.++..+.+.+.+.+.++-+.+||+|.+|+|-.|
T Consensus 67 ~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlP 100 (297)
T PRK14168 67 QDNQSVDITEEELLALIDKYNNDDSIHGILVQLP 100 (297)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 4456788899999999999999999999998655
No 238
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=37.23 E-value=8.5 Score=29.97 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=23.1
Q ss_pred cchhhHHhh-hhccCCCHHHHHHHHHHcCCCCCCceeeCC
Q 016159 16 VAGQWQQQQ-LRRLNIHEYQGAELMAKYGINVPKGLAVAS 54 (394)
Q Consensus 16 ~~~~~~~~~-~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s 54 (394)
.|.|+.... ...+...||-+..+.++.||++|+..++..
T Consensus 29 ~IvK~~~~~~~~~~~~nE~~~~~lA~~~Gi~v~~~~l~~~ 68 (81)
T PF07805_consen 29 HIVKFPSSRDDPDLVENEYACMRLARAAGIPVPETRLIRF 68 (81)
T ss_dssp EEEE-S-CEEETTHHHHHHHHHHHHHHTT-----EEEEEE
T ss_pred EEEeCCCcccccchHHHHHHHHHHHHHcCCCcCceEEEEE
Confidence 355553333 334567899999999999999999988654
No 239
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=36.98 E-value=1.4e+02 Score=28.60 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=55.1
Q ss_pred ceeEEecC-hhH------HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHH
Q 016159 293 EIGCMVNG-AGL------AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (394)
Q Consensus 293 ~Ig~~~nG-aGl------~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~ 365 (394)
+|+++... ... -....+++..+|-.+ .. ..+.-+.+..+++++-++. ++..+|| ..-|.+|.
T Consensus 174 ~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi~~--~~-~~~~~~~~~~~~~~~~~l~-~~~tAi~-------~~~D~~A~ 242 (311)
T TIGR02405 174 HISFLGVDPSDKTTGLMRHNAYLAYCESANLEP--IY-QTGQLSHESGYVLTDKVLK-PETTALV-------CATDTLAL 242 (311)
T ss_pred cEEEEccCcccchhHHHHHHHHHHHHHHcCCCc--ee-eeCCCCHHHHHHHHHHHHh-cCCCEEE-------ECCcHHHH
Confidence 68877422 111 123567777777653 12 2344455666666766665 4567888 44588999
Q ss_pred HHHHHHHHcCCcc--eEEeecceEEE
Q 016159 366 GIVNAAKQVSALD--CFGFHSNYFCL 389 (394)
Q Consensus 366 gii~a~~~~~~~~--~~~~~~~~~~~ 389 (394)
++++++++.+++. +.+|-++-++.
T Consensus 243 g~~~~l~~~g~~dvsvvgfd~~~~~~ 268 (311)
T TIGR02405 243 GAAKYLQELDRSDVQVSSVGNTPLLS 268 (311)
T ss_pred HHHHHHHHcCCCCeEEEeeCCchhhc
Confidence 9999999999765 67776665443
No 240
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=36.83 E-value=1.3e+02 Score=27.57 Aligned_cols=49 Identities=24% Similarity=0.209 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecc
Q 016159 329 SEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSN 385 (394)
Q Consensus 329 ~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~ 385 (394)
+.++-+++++-++ +.| +++|+ ...|..|.++++++++.+.++ .++|-++
T Consensus 157 ~~~~~~~~~~~~l~~~~-~~~i~-------~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~ 211 (259)
T cd01542 157 SYESAYEAAQELLEPQP-PDAIV-------CATDTIALGAMKYLQELGRRIPEDISVAGFGGY 211 (259)
T ss_pred chhhHHHHHHHHhcCCC-CCEEE-------EcCcHHHHHHHHHHHHcCCCCCCceEEEecCCc
Confidence 3445555554444 456 88888 334678999999999998763 7777655
No 241
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.40 E-value=1e+02 Score=30.32 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=28.6
Q ss_pred eeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (394)
Q Consensus 321 flD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ 354 (394)
-..+..+.+.+.+.+.++-+..|++|++|+|-.|
T Consensus 67 ~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlP 100 (284)
T PRK14177 67 MIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHP 100 (284)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 3455778889999999999999999999999655
No 242
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=36.27 E-value=1.1e+02 Score=27.71 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCcceEEee
Q 016159 330 EGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSALDCFGFH 383 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~~~~~~~ 383 (394)
.+.+.++++-+.+++ ++.|++ |.+||-... +..|.+++...+..+.=.++
T Consensus 15 ~~~l~~~l~~a~~~~-~~~vvl~InSpGG~v~~---~~~i~~~l~~~~kPvia~v~ 66 (187)
T cd07020 15 ADYLERAIDQAEEGG-ADALIIELDTPGGLLDS---TREIVQAILASPVPVVVYVY 66 (187)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEEECCCCCHHH---HHHHHHHHHhCCCCEEEEEe
Confidence 456777777776654 776544 899985432 24566666665544433343
No 243
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=36.04 E-value=1e+02 Score=31.32 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=35.5
Q ss_pred EEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEEE
Q 016159 348 AILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFCL 389 (394)
Q Consensus 348 ~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~~ 389 (394)
+++||-.||.+.-+. +++.+.+.+++.++++...+-|||+..
T Consensus 279 ~vLVNgLG~t~~~El~i~~~~v~~~L~~~gi~v~r~~vG~~~TS 322 (356)
T PRK11468 279 IALVNNLGATPLSELYGVYNRLATRCEQAGLTIERNLIGAYCTS 322 (356)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEeeeeccccc
Confidence 467799999777554 568999999999999999999999864
No 244
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=35.93 E-value=2.5e+02 Score=25.60 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=59.3
Q ss_pred ceeEEecChhHHHHHHHHHHHcC---CC-ccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159 293 EIGCMVNGAGLAMATMDIIKLHG---GT-PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (394)
Q Consensus 293 ~Ig~~~nGaGl~m~t~D~i~~~g---g~-~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii 368 (394)
++=+|..||=.+=.++-+|..+- -+ ---.+|+---...|.+++|++.+.+-|++-.+++ -|+++ ...+++++-
T Consensus 85 RvIiiGGGAqVsqVA~GAIsEADRHNiRGERISvDTiPlVGEE~laEAVkAV~rLpRv~iLVL--AGslM-GGkIteaVk 161 (218)
T COG1707 85 RVIIIGGGAQVSQVARGAISEADRHNIRGERISVDTIPLVGEEELAEAVKAVARLPRVGILVL--AGSLM-GGKITEAVK 161 (218)
T ss_pred EEEEECCchhHHHHHHhhcchhhhcccccceeeeecccccChHHHHHHHHHHhccccceeEEE--ecccc-cchHHHHHH
Confidence 77788777777777777775432 11 1245676666778999999999999999977664 23322 225677776
Q ss_pred HHHHHcCCcc-eEEeec
Q 016159 369 NAAKQVSALD-CFGFHS 384 (394)
Q Consensus 369 ~a~~~~~~~~-~~~~~~ 384 (394)
+.-+++++.+ -+...|
T Consensus 162 ~lr~~hgI~VISL~M~G 178 (218)
T COG1707 162 ELREEHGIPVISLNMFG 178 (218)
T ss_pred HHHHhcCCeEEEeccCC
Confidence 6677778877 443333
No 245
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=35.26 E-value=67 Score=35.14 Aligned_cols=66 Identities=23% Similarity=0.373 Sum_probs=42.7
Q ss_pred ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHH---cCCcc---eEEee-cceE
Q 016159 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQ---VSALD---CFGFH-SNYF 387 (394)
Q Consensus 320 NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~---~~~~~---~~~~~-~~~~ 387 (394)
.|-|-||+||+|-+.+ ++-|.+-.+.++++=|+--||| .|+.=.+|.+--.+ +..=. +|-|| |||-
T Consensus 490 G~GDGGGGPT~eML~k-lrR~r~~~Nt~G~lP~vqlg~t-vdeffd~ilkrtnqg~~LptW~GELyfEfHrGTYT 562 (1078)
T KOG4342|consen 490 GFGDGGGGPTQEMLDK-LRRIRSLSNTDGVLPRVQLGIT-VDEFFDAILKRTNQGHDLPTWVGELYFEFHRGTYT 562 (1078)
T ss_pred EecCCCCCCcHHHHHH-HHHhhcccccCCcccceeecCC-HHHHHHHHHhhhccCCcccccchheEEEEecCcee
Confidence 7899999999765554 6666555666676656666766 56666666544333 11111 88887 7885
No 246
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=34.95 E-value=1.6e+02 Score=28.52 Aligned_cols=87 Identities=20% Similarity=0.245 Sum_probs=54.2
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHH-HHHHHhcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVE-AFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~-a~~~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
|++.++..-.|.. .-..+.+..+++..---....++-+.++.++ .-.+|.++|++++|+ ..-|.+|
T Consensus 159 g~v~~~~g~~~~~~~~~R~~G~~~~l~~~~~~~~v~~~~~~~~~~~~a~~~~~~~L~~~pdi~~i~-------~~~d~~a 231 (322)
T COG1879 159 GKVVVLVGSPGNSSAEERVKGFRDALKEHPPDIEVVDVQTGDWDRDKALEVMEDLLAANPDIDGIY-------AANDGMA 231 (322)
T ss_pred CeEEEEecCCCCchHHHHHhhHHHHHHhCCCcEEEeeccCCcccHHHHHHHHHHHHHhCCCceEEE-------ECCchhH
Confidence 6666665444332 2235666656554223333556666666665 456777899999999 3345778
Q ss_pred HHHHHHHHHcCCc--c-eEEeecc
Q 016159 365 SGIVNAAKQVSAL--D-CFGFHSN 385 (394)
Q Consensus 365 ~gii~a~~~~~~~--~-~~~~~~~ 385 (394)
-|.++|+++.+.. + ++++.++
T Consensus 232 ~ga~~A~~~~g~~~~v~v~g~D~~ 255 (322)
T COG1879 232 LGAIQALKAAGRKGDVVVVGFDGT 255 (322)
T ss_pred HHHHHHHHHcCCCCceEEEEecCC
Confidence 8999999987765 4 5555554
No 247
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=34.76 E-value=2.5e+02 Score=26.69 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHcC---CCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC------C
Q 016159 30 IHEYQGAELMAKYG---INVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV------K 100 (394)
Q Consensus 30 L~E~~aK~lL~~~G---Ipvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~------s 100 (394)
-.+|.+++.+++.+ .-+|--.+.+++++..- ..+. .++|+|+.--. |++.++ +
T Consensus 19 ~DK~~VR~yv~~~~g~~~l~pll~v~~~~~~i~~--~~Lp---~~fViK~nhgs-------------g~~~i~~dk~~~d 80 (239)
T PF14305_consen 19 ADKYAVREYVEEKIGEEYLPPLLGVYDNPDDIDF--DSLP---DKFVIKPNHGS-------------GSNIIVRDKSKLD 80 (239)
T ss_pred chHHHHHHHHHHhCCCceECceeecCCChhhhhh--hcCC---CCEEEEEecCC-------------CcEEEEeCCcccC
Confidence 56889999999986 33444455667766532 2343 57999996311 233333 4
Q ss_pred HHHHHHHHHHHhccccc--ccccCCCCcccceEEEEeeeCC
Q 016159 101 KEEVEDLAGKMLGQILV--TKQTGPQGKIVSKVYLCEKLSL 139 (394)
Q Consensus 101 ~ee~~~a~~~~l~~~l~--~~q~~~~g~~v~~vlVee~v~~ 139 (394)
.++++..+.+++..... .....-.. .-..++||+++..
T Consensus 81 ~~~~~~~~~~wl~~~~~~~~~E~~Y~~-i~prIivE~~l~~ 120 (239)
T PF14305_consen 81 IEEAKKKLNRWLKKDYYYQSREWHYKN-IKPRIIVEELLED 120 (239)
T ss_pred HHHHHHHHHHHhhhccccccccccCcC-CCceEEEEecccc
Confidence 55555555555543211 11111112 2268999999853
No 248
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=34.29 E-value=2.3e+02 Score=27.49 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCC---Cccce--eecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc
Q 016159 304 AMATMDIIKLHGG---TPANF--LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL 377 (394)
Q Consensus 304 ~m~t~D~i~~~gg---~~aNf--lD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~ 377 (394)
..++.|.|+..|| ++-.+ .|.++ ++++...+.+-+..+.+|.+|+ |+..+. ++.++...+++.++-
T Consensus 23 ~~la~~~iNa~gGi~Gr~v~lv~~D~~~--~p~~a~~~~~~Li~~~~V~aii----G~~~s~--~~~a~~~~~~~~~vp 93 (334)
T cd06356 23 TQLAVDEINASGGILGREVELVDYDTQS--DNERYQQYAQRLALQDKVDVVW----GGISSA--SREAIRPIMDRTKQL 93 (334)
T ss_pred HHHHHHHHHhcCCCCCceEEEEEECCCC--CHHHHHHHHHHHHHhCCCCEEE----eCcchH--HHHHHHHHHHhcCce
Confidence 4567889988776 45544 45555 4566666666666667888887 554433 456666667766543
No 249
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=33.49 E-value=80 Score=23.30 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCC-CCcEEE
Q 016159 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPD-HKELVV 74 (394)
Q Consensus 33 ~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~-~~PvVv 74 (394)
..+|++|+++||+...-.+-.+++...+..+..|.. +.|+|+
T Consensus 14 ~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 14 VRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred HHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 478999999999886655555555545444444411 356554
No 250
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=33.32 E-value=86 Score=31.85 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=52.7
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCcc-------------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCC
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPA-------------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~a-------------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi 357 (394)
.+.+++++.||. |.+|+ -.-|+=-.|++++++.|.+.+-+.++|=-|+-|--|=.
T Consensus 43 ~~kValIsGGGS------------GHEPah~GyVG~GmLdAAv~G~VFaSPs~~qI~~ai~av~~~~GvLlivkNYtGDv 110 (356)
T PRK11468 43 AGKVALLSGGGS------------GHEPMHCGFVGQGMLDGACPGEIFTSPTPDQMFECAMQVDGGEGVLLIIKNYTGDV 110 (356)
T ss_pred CCcEEEEecCCc------------cccccccceecCCcccceeeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHhh
Confidence 478999987774 66765 55667788999999999999988765433333888889
Q ss_pred CChHHHHHHHHHHHHHcCCcc
Q 016159 358 MKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 358 ~~~d~vA~gii~a~~~~~~~~ 378 (394)
.++++.|+- ++..++++
T Consensus 111 lNF~mAaE~----a~~eGi~v 127 (356)
T PRK11468 111 LNFETATEL----LHDSGVKV 127 (356)
T ss_pred ccHHHHHHH----HHhCCCcE
Confidence 999876653 23446655
No 251
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.41 E-value=1.5e+02 Score=28.43 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHh-cCC-CccEEEEEccCCCCChHHHHHHHHHHHHHcCCc-------c-eEEeecce
Q 016159 326 GNASEGQVVEAFKILT-SDE-KVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL-------D-CFGFHSNY 386 (394)
Q Consensus 326 G~a~~~~~~~a~~~~l-~~~-~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~-------~-~~~~~~~~ 386 (394)
++.+.+..+++++-++ +.| .+++|+ ...|.+|.++++++++.+.+ . +.+|-++-
T Consensus 180 ~~~~~~~~~~~~~~~L~~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~~p~~~~di~iig~d~~~ 243 (303)
T cd01539 180 ANWDRAQAKDKMDALLLKYGDKIEAVI-------ANNDAMALGAIEALQKYGYNKGDKSKNIPVVGVDALP 243 (303)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCccEEE-------ECCchHHHHHHHHHHHcCCCcCCCCCceEEEccCCCH
Confidence 3445555555555444 545 589988 45577889999999998753 2 67776653
No 252
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=32.10 E-value=1e+02 Score=33.38 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcC----CCcc-EEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEEE
Q 016159 331 GQVVEAFKILTSD----EKVK-AILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFCL 389 (394)
Q Consensus 331 ~~~~~a~~~~l~~----~~v~-~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~~ 389 (394)
+-+.+.++.|+.+ ++-+ +++||-.||.+..+. +++.+.+.+++.++++...+-|||+..
T Consensus 232 ~~~~~~~~~l~~~~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~i~v~~~~vG~~~Ts 297 (568)
T PRK14479 232 ELADRLVDRILADLPLGAGERVAVLVNGLGATPYEELFVVYGAVARLLAARGITVVRPEVGEFVTS 297 (568)
T ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEeeeeccccc
Confidence 4455566666653 2223 477799999776544 679999999999999999999999764
No 253
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.04 E-value=1.4e+02 Score=29.57 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=29.1
Q ss_pred cceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (394)
Q Consensus 319 aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ 354 (394)
..-.++..+.+.+.+.+.++-+.+||+|.+|+|-.|
T Consensus 64 ~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlP 99 (294)
T PRK14187 64 SETILLPSTISESSLIEKINELNNDDSVHGILVQLP 99 (294)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 345667788888888888999999999999998655
No 254
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=31.81 E-value=3.5e+02 Score=26.44 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=61.3
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCC--Cccceee----cCCCCCHHHHHHHHHHHhcCC---CccEEEEEccCCCCCh
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGG--TPANFLD----VGGNASEGQVVEAFKILTSDE---KVKAILVNIFGGIMKC 360 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg--~~aNflD----~gG~a~~~~~~~a~~~~l~~~---~v~~i~vni~ggi~~~ 360 (394)
..-+||+++.-.|.++ -|.+....- ...++.- +=|.-.++.+.+|++.+-+.+ .+++|+| +=||...-
T Consensus 13 ~p~~I~vITs~~gAa~--~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii-~RGGGs~e 89 (319)
T PF02601_consen 13 FPKRIAVITSPTGAAI--QDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIII-IRGGGSIE 89 (319)
T ss_pred CCCEEEEEeCCchHHH--HHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEE-ecCCCChH
Confidence 4569999999888776 576665432 3344443 346667899999999998876 7888775 34555555
Q ss_pred HHHH---HHHHHHHHHcCCcceEEe
Q 016159 361 DVIA---SGIVNAAKQVSALDCFGF 382 (394)
Q Consensus 361 d~vA---~gii~a~~~~~~~~~~~~ 382 (394)
|..+ +.+++|+-+.++.++=+|
T Consensus 90 DL~~FN~e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 90 DLWAFNDEEVARAIAASPIPVISAI 114 (319)
T ss_pred HhcccChHHHHHHHHhCCCCEEEec
Confidence 5544 788888888776654433
No 255
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=31.51 E-value=81 Score=34.65 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHhC--CCCCc-----EEEEEee
Q 016159 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDAF--PDHKE-----LVVKSQI 78 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~lg--~~~~P-----vVvK~q~ 78 (394)
-+.++.-+.|++.|+||.+ ..+|.+.+|+.+..+.+. +...| +|+|.+.
T Consensus 236 ~t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~~~~R~~L~y~IDGvViKvn~ 292 (667)
T COG0272 236 DTQSERLAFLKAWGFPVNPYTRLCKNADEVLAFYEEWEKKRASLPYDIDGVVIKVND 292 (667)
T ss_pred cCHHHHHHHHHHcCCCCCcHhhhcCCHHHHHHHHHHHHhhcccCCCccceEEEEecc
Confidence 4578999999999999766 678999999988887764 12223 7888743
No 256
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=30.69 E-value=1.3e+02 Score=28.21 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcceEEeecceEEE
Q 016159 330 EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNYFCL 389 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~~~~~~~~~~~~ 389 (394)
.+..+++++-+++.. .++|+ +.-|.+|-|+++++++.++. +.+|-++..|.
T Consensus 169 ~~~~~~~~~~ll~~~-pdaI~-------~~nd~~A~gv~~al~~~gis-IvGfD~~~~~~ 219 (265)
T cd06354 169 PAKGKEIAQAMYDQG-ADVIF-------AAAGGTGNGVFQAAKEAGVY-AIGVDSDQYYL 219 (265)
T ss_pred HHHHHHHHHHHHHCC-CcEEE-------ECCCCCchHHHHHHHhcCCe-EEEecCccccc
Confidence 455556666666532 57888 33567889999999999922 56776666554
No 257
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=30.56 E-value=99 Score=28.00 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 330 EGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
.+.+.++++....+ +++.|++ |.|||-..+ +..|.++++..+..+
T Consensus 15 ~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~---~~~I~~~i~~~~~pv 61 (172)
T cd07015 15 YDQFDRYITIAEQD-NAEAIIIELDTPGGRADA---AGNIVQRIQQSKIPV 61 (172)
T ss_pred HHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHH---HHHHHHHHHhcCcCE
Confidence 34556677776654 5676555 999997754 367888888766655
No 258
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=30.47 E-value=1.1e+02 Score=22.93 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEE
Q 016159 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELV 73 (394)
Q Consensus 33 ~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvV 73 (394)
..+|++|+++||+....-+-.+++...+..+..|..+.|+|
T Consensus 13 ~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 13 TRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQI 53 (79)
T ss_pred HHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence 47899999999987665555555544444433331224554
No 259
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=30.43 E-value=1.8e+02 Score=25.77 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc--c--eEEeecceEE
Q 016159 331 GQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL--D--CFGFHSNYFC 388 (394)
Q Consensus 331 ~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~--~--~~~~~~~~~~ 388 (394)
+.+..+.+.+.+.|++++|++ .++..|.++++++++.+.. . ++++-+...+
T Consensus 168 ~~~~~~~~~l~~~~~~~~i~~-------~~~~~a~~~~~~~~~~g~~~~~~~ii~~~~~~~~ 222 (269)
T cd01391 168 KGFQALLQLLKAAPKPDAIFA-------CNDEMAAGALKAAREAGLTPGDISIIGFDGSPAA 222 (269)
T ss_pred ccHHHHHHHHhcCCCCCEEEE-------cCchHHHHHHHHHHHcCCCCCCCEEEeccccccc
Confidence 456667777777778999883 2346789999999999884 2 7777665544
No 260
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.08 E-value=1.5e+02 Score=29.03 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=27.2
Q ss_pred eeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (394)
Q Consensus 321 flD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ 354 (394)
-..+..+.+.+.+.+.++-+..|++|.+|+|-.|
T Consensus 60 ~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 93 (279)
T PRK14178 60 GIELPGDATTRTVLERIRRLNEDPDINGILVQLP 93 (279)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 3556777788888888888889999999988555
No 261
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=29.62 E-value=1.9e+02 Score=25.68 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=35.1
Q ss_pred ceeecCCCCCHHHHHH---HHHHHhcCCCccE--EEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 320 NFLDVGGNASEGQVVE---AFKILTSDEKVKA--ILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 320 NflD~gG~a~~~~~~~---a~~~~l~~~~v~~--i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
+-+-++|..+++.... .+..+..++..+. +.||.+||-. .-+..|.++++.++.++
T Consensus 10 r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v---~~~~~i~~~l~~~~~~v 70 (171)
T cd07017 10 RIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSV---TAGLAIYDTMQYIKPPV 70 (171)
T ss_pred cEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCH---HHHHHHHHHHHhcCCCE
Confidence 3455667666655544 3444445544444 5559999943 33578999999887665
No 262
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=29.34 E-value=1.3e+02 Score=32.64 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEEEc--cCC--CCChHHHHHHHHHHHHHcCCcceEEe
Q 016159 327 NASEGQVVEAFKILTSDEKVKAILVNI--FGG--IMKCDVIASGIVNAAKQVSALDCFGF 382 (394)
Q Consensus 327 ~a~~~~~~~a~~~~l~~~~v~~i~vni--~gg--i~~~d~vA~gii~a~~~~~~~~~~~~ 382 (394)
..+-..+.++++-...||+|++|++.+ ++| .+..+++++.|.+. |+.+ |+++.+
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~f-k~sg-KpVvA~ 132 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEF-KDSG-KPVYAY 132 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHH-HhcC-CeEEEE
Confidence 346678889999999999999999954 433 34456666665444 3322 345554
No 263
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.02 E-value=1.8e+02 Score=28.61 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=28.0
Q ss_pred ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (394)
Q Consensus 320 NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ 354 (394)
--..+..+.+.+.+.+.++-+..||+|.+|+|-.|
T Consensus 63 ~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlP 97 (282)
T PRK14182 63 VEHHLPATTTQAELLALIARLNADPAVHGILVQLP 97 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 34556777888888888888899999999998655
No 264
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=28.77 E-value=1.3e+02 Score=31.06 Aligned_cols=8 Identities=38% Similarity=0.683 Sum_probs=7.5
Q ss_pred eEEeecce
Q 016159 379 CFGFHSNY 386 (394)
Q Consensus 379 ~~~~~~~~ 386 (394)
+|.||||+
T Consensus 113 Vf~I~GNH 120 (405)
T TIGR00583 113 VFSIHGNH 120 (405)
T ss_pred EEEEcCCC
Confidence 99999996
No 265
>PRK10949 protease 4; Provisional
Probab=28.64 E-value=1.1e+02 Score=33.33 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEE--EccCC--CCChHHHHHHHHHHHHHcCCcceEEe
Q 016159 328 ASEGQVVEAFKILTSDEKVKAILV--NIFGG--IMKCDVIASGIVNAAKQVSALDCFGF 382 (394)
Q Consensus 328 a~~~~~~~a~~~~l~~~~v~~i~v--ni~gg--i~~~d~vA~gii~a~~~~~~~~~~~~ 382 (394)
.+-..+.++++-...||+|++|++ |.+|| .+.++++.++|-+. |+.+ |+++.+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~f-k~sG-KpVvA~ 151 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREF-RDSG-KPVYAV 151 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHH-HHhC-CeEEEE
Confidence 344678889999999999999999 66655 34567777776544 4433 345554
No 266
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=28.57 E-value=1e+02 Score=30.58 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCCHHHHH-HHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEe
Q 016159 327 NASEGQVV-EAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGF 382 (394)
Q Consensus 327 ~a~~~~~~-~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~ 382 (394)
+-+.++-+ .+-++|.++|++++||.+ .+..+.|.++|+++.+... +++|
T Consensus 190 ~~d~~~a~~~~~~lL~~~pdi~aI~~~-------~~~~~~Ga~~Al~~~g~~~v~VvG~ 241 (336)
T PRK15408 190 YNDATKSLQTAEGILKAYPDLDAIIAP-------DANALPAAAQAAENLKRDKVAIVGF 241 (336)
T ss_pred CCcHHHHHHHHHHHHHHCCCCcEEEEC-------CCccHHHHHHHHHhCCCCCEEEEEe
Confidence 34445544 455677778999999932 2334578999999987643 5554
No 267
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=28.24 E-value=1.1e+02 Score=30.87 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=48.5
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCcc-------------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCC
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPA-------------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~a-------------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi 357 (394)
++++++++.||. |.+|+ -.-|+=-.|+++++.+|.+.+.+.++|=-|+-|--|=+
T Consensus 42 ~~kV~lIsGGGS------------GHEPah~GyVG~GmLdAav~G~VFaSPs~~qI~~ai~av~~~~GvL~ivkNYtGDv 109 (329)
T PRK14483 42 DQLVPIISGGGS------------GHEPAHIGYVGKGMLTAAVNGSIFTPPTAEQILAATRLVPKGKGVFFIIKNFEADV 109 (329)
T ss_pred CCcEEEEecCCc------------cccccccccccCCccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHHh
Confidence 478999987774 77775 55567778999999999999988766533333888888
Q ss_pred CChHHHHHH
Q 016159 358 MKCDVIASG 366 (394)
Q Consensus 358 ~~~d~vA~g 366 (394)
.+++..|+-
T Consensus 110 lnF~mA~E~ 118 (329)
T PRK14483 110 AEFSAAIQI 118 (329)
T ss_pred hhHHHHHHH
Confidence 888876653
No 268
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=27.88 E-value=1.9e+02 Score=27.48 Aligned_cols=49 Identities=8% Similarity=0.098 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc---eEEeec
Q 016159 328 ASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---CFGFHS 384 (394)
Q Consensus 328 a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---~~~~~~ 384 (394)
-+.+.-+++++-++ ++|.+++|+ + .|.+|.++++++++.++.. +.++..
T Consensus 166 ~~~~~~~~~~~~~L~~~~~~d~i~----~----~d~~a~g~l~al~~~g~~~dv~vvg~~~ 218 (295)
T TIGR02955 166 NDKELQRNLLQDLLKKHPDIDYLV----G----SAVAAEAAISELRSLHMTQQIKLVSTYL 218 (295)
T ss_pred CcHHHHHHHHHHHHHhCCCcCEEE----e----ccHHHHHHHHHHHhhCccCCeEEEEecC
Confidence 34455455555444 567777653 1 2678999999999886543 555443
No 269
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=27.79 E-value=1.3e+02 Score=29.78 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHh
Q 016159 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDA 65 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~l 65 (394)
.+.++..+.|+..|+++++ ...+.+.+|+.+..+.+
T Consensus 227 ~t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~ 263 (307)
T cd00114 227 KTQSEALAFLKEWGFPVSPETRLCKNIEEVLAFYDEI 263 (307)
T ss_pred CCHHHHHHHHHHCCCCCCCCeEEeCCHHHHHHHHHHH
Confidence 3678889999999999984 66688899998887766
No 270
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=27.67 E-value=1.7e+02 Score=29.35 Aligned_cols=63 Identities=25% Similarity=0.370 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCccceeecC---CCCCHHHHHHHHHHHhcCCCccEEEE-EccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 306 ATMDIIKLHGGTPANFLDVG---GNASEGQVVEAFKILTSDEKVKAILV-NIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 306 ~t~D~i~~~gg~~aNflD~g---G~a~~~~~~~a~~~~l~~~~v~~i~v-ni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
++.+.+...|.+|- |+|+- ...+.+.+.+++ +++.++|++ |..|.. +|. +.|++.++++++.+
T Consensus 83 ~~~~~~~~~G~~~v-~~d~d~~~~~~d~~~le~~i-----~~~tk~i~~~~~~G~~--~~~--~~i~~la~~~~i~v 149 (375)
T PRK11706 83 STANAFVLRGAKIV-FVDIRPDTMNIDETLIEAAI-----TPKTRAIVPVHYAGVA--CEM--DTIMALAKKHNLFV 149 (375)
T ss_pred HHHHHHHHcCCEEE-EEecCCCcCCcCHHHHHHhc-----CCCCeEEEEeCCCCCc--cCH--HHHHHHHHHcCCEE
Confidence 34566777888765 77764 346777777654 246788776 544433 443 56777777766544
No 271
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.33 E-value=2.4e+02 Score=26.14 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEE-EccCC
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILV-NIFGG 356 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~v-ni~gg 356 (394)
....++..|.+..--+...+..+++.+.+..+.+..- +++.|-+ ...|.
T Consensus 113 ~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~i~l~Dt~G~ 162 (237)
T PF00682_consen 113 AVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEA-GADIIYLADTVGI 162 (237)
T ss_dssp HHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHH-T-SEEEEEETTS-
T ss_pred HHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHc-CCeEEEeeCccCC
Confidence 3444444444443333333444555555555555432 3344333 44443
No 272
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=27.06 E-value=2.1e+02 Score=28.67 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=54.3
Q ss_pred CceeEEecChhHHHHHHHHH----HHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHH
Q 016159 292 GEIGCMVNGAGLAMATMDII----KLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGI 367 (394)
Q Consensus 292 G~Ig~~~nGaGl~m~t~D~i----~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gi 367 (394)
|++.+++.++-...-.+|.+ ...|-+..-|-+++++++.+.+.++.+.+.+. +.+.|+ -+||- ++-++|+++
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~II--aiGGG-S~~D~aK~v 97 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKF-GADCII--AIGGG-SVMDAAKAV 97 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHT-TSSEEE--EEESH-HHHHHHHHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhc-CCCEEE--EcCCC-CcCcHHHHH
Confidence 68888887733222134444 34566777888899999999999999988874 677666 45663 466688888
Q ss_pred HHHHHH
Q 016159 368 VNAAKQ 373 (394)
Q Consensus 368 i~a~~~ 373 (394)
.-.+.+
T Consensus 98 a~~~~~ 103 (366)
T PF00465_consen 98 ALLLAN 103 (366)
T ss_dssp HHHHTS
T ss_pred HhhccC
Confidence 777763
No 273
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=26.93 E-value=1.6e+02 Score=27.39 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=41.9
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc---eEEee
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---CFGFH 383 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---~~~~~ 383 (394)
.+++..++..........++.+.+..++.+ +++.++|++++|+.+ + |.+ .|+++++++.+.+. +.+|-
T Consensus 148 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~--~-----d~~-~g~~~al~~~g~~~di~Ivg~d 219 (275)
T cd06307 148 RSVLREEFPGLRVLETLEGLDDPARAYEATRKLLARHPDLVGIYNA--G-----GGN-RGVIRALREAGRAGKVVFVGHE 219 (275)
T ss_pred HHHHHhhCCCcEEEeeccCCCChHHHHHHHHHHHHhCCCceEEEEC--C-----CCh-HHHHHHHHHcCCCCCcEEEEec
Confidence 455555554322111223444555544444 444457888999842 1 233 49999999998753 77776
Q ss_pred cceEE
Q 016159 384 SNYFC 388 (394)
Q Consensus 384 ~~~~~ 388 (394)
++-++
T Consensus 220 ~~~~~ 224 (275)
T cd06307 220 LTPET 224 (275)
T ss_pred CChHH
Confidence 65443
No 274
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=26.85 E-value=1.1e+02 Score=30.68 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=51.9
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCcc-------------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCC
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPA-------------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~a-------------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi 357 (394)
++.+++++.||. |.+|+ -.-|+=-.|+++++..|.+.+.++++|=-|+-|--|=.
T Consensus 40 ~~kValIsGGGS------------GHEPah~GfVG~GmLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~ivkNYtGD~ 107 (326)
T TIGR02362 40 DQQIPIISGGGS------------GHEPAHWGYVGEGMLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVIIKNFEADL 107 (326)
T ss_pred CCcEEEEecCCc------------cccccccccccCCccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEeccCHHHH
Confidence 478999987774 77775 55567778999999999999988766433333888888
Q ss_pred CChHHHHHHHHHHHHHcCCcc
Q 016159 358 MKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 358 ~~~d~vA~gii~a~~~~~~~~ 378 (394)
.++++.|+- .+..++++
T Consensus 108 lNF~mA~E~----a~~eGi~v 124 (326)
T TIGR02362 108 SEFSQAIQQ----ARQEGRQI 124 (326)
T ss_pred hhHHHHHHH----HHHcCCcE
Confidence 888876653 23345555
No 275
>PRK08636 aspartate aminotransferase; Provisional
Probab=26.62 E-value=2.1e+02 Score=28.83 Aligned_cols=85 Identities=20% Similarity=0.108 Sum_probs=54.7
Q ss_pred ceeEEecChhHHH-HHHHHHHHcCCC-----cc-----------------ceee--cCCCCCHHHHHHHHHHHhc--CCC
Q 016159 293 EIGCMVNGAGLAM-ATMDIIKLHGGT-----PA-----------------NFLD--VGGNASEGQVVEAFKILTS--DEK 345 (394)
Q Consensus 293 ~Ig~~~nGaGl~m-~t~D~i~~~gg~-----~a-----------------NflD--~gG~a~~~~~~~a~~~~l~--~~~ 345 (394)
+| +++||+--++ +++.++..-|.. |. -++| -+.+.+.+.+...++-.++ .++
T Consensus 97 ~I-~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 175 (403)
T PRK08636 97 EV-VATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPK 175 (403)
T ss_pred eE-EECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCC
Confidence 45 6888877665 455666655542 21 1222 2346777766666655554 367
Q ss_pred ccEEEEE---ccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 346 VKAILVN---IFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 346 v~~i~vn---i~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
++.+++| -|.|.+-..+--+.|++..+++++-.
T Consensus 176 ~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~I 211 (403)
T PRK08636 176 PKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYI 211 (403)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEE
Confidence 8888884 56777777777788999999877644
No 276
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=25.76 E-value=96 Score=22.06 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEE
Q 016159 34 QGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVV 74 (394)
Q Consensus 34 ~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVv 74 (394)
.+|++|+++|++.-..-+-.+++...+..+..|..+.|.|.
T Consensus 14 ~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~ 54 (60)
T PF00462_consen 14 KAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVF 54 (60)
T ss_dssp HHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE
T ss_pred HHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEE
Confidence 68999999999854333444443333333333533467664
No 277
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=25.59 E-value=3.2e+02 Score=25.54 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=41.2
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEcc----------C-CCCChHHHHHHHHHHHHHc
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIF----------G-GIMKCDVIASGIVNAAKQV 374 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~----------g-gi~~~d~vA~gii~a~~~~ 374 (394)
++.+...|-...---|-|.---..-||.++....+ .+.++++|||+| + .-++.+.+++++..+++..
T Consensus 119 ~~~l~~~gip~~~S~dAG~ylCN~i~Y~sL~~~~~~~~~~~agFIHVP~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~ 197 (212)
T TIGR00504 119 VLAMKKAGIPADVSYTAGTFVCNHLMYGLLHHLAQKGLPVRAGFIHVPYLPSQVALKHGVPSMSLDTAVAGVTIAIETA 197 (212)
T ss_pred HHHHHHcCCCeeEeCCCCceeeHHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 44455555332223344444447889999987755 456889999999 1 2244666777766666553
No 278
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=25.55 E-value=2.6e+02 Score=28.85 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=60.4
Q ss_pred ceeEE-ecChhH-HHHHHHHHHHcCCCccce----------eecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCCh
Q 016159 293 EIGCM-VNGAGL-AMATMDIIKLHGGTPANF----------LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKC 360 (394)
Q Consensus 293 ~Ig~~-~nGaGl-~m~t~D~i~~~gg~~aNf----------lD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~ 360 (394)
.+++. +||.|+ .=-.++.|..+|-.+-|+ -.+-|.+.++++.+.++.+.+...+.+-.+-+ -|++..
T Consensus 104 ~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~~~v~~~ivlI-PGiND~ 182 (404)
T TIGR03278 104 PIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCESCEVHAASVII-PGVNDG 182 (404)
T ss_pred CEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhcCCEEEEEEEe-CCccCc
Confidence 46775 999987 335578888887765433 23445555577777788876643333323333 567777
Q ss_pred HHHHHHHHHHHHHcCCcc--eEEee
Q 016159 361 DVIASGIVNAAKQVSALD--CFGFH 383 (394)
Q Consensus 361 d~vA~gii~a~~~~~~~~--~~~~~ 383 (394)
++.. .+++.+++++.+. ++.||
T Consensus 183 eel~-~ti~~L~~lg~~~V~L~~y~ 206 (404)
T TIGR03278 183 DVLW-KTCADLESWGAKALILMRFA 206 (404)
T ss_pred HHHH-HHHHHHHHCCCCEEEEEecc
Confidence 7774 8999999999877 88898
No 279
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=25.37 E-value=82 Score=32.34 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=17.6
Q ss_pred ecCCCCCHHHHHHHHHHHhcCCCccEEEE
Q 016159 323 DVGGNASEGQVVEAFKILTSDEKVKAILV 351 (394)
Q Consensus 323 D~gG~a~~~~~~~a~~~~l~~~~v~~i~v 351 (394)
|+-|+...+++++|++-+.+.-+.++|+|
T Consensus 62 Div~G~~~~~L~~aI~~i~~~~~P~~I~V 90 (407)
T TIGR01279 62 DLSSAAPAEELDRVVEQIKRDRNPSVIFL 90 (407)
T ss_pred hhhcccchHHHHHHHHHHHhhcCCCEEEE
Confidence 44455544677777776666555666665
No 280
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=25.31 E-value=1.7e+02 Score=21.60 Aligned_cols=35 Identities=3% Similarity=-0.218 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhC
Q 016159 32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAF 66 (394)
Q Consensus 32 E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg 66 (394)
=..++++|.+.||+....-+-.+++...+..+..|
T Consensus 14 C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g 48 (73)
T cd03027 14 CTAVRLFLREKGLPYVEINIDIFPERKAELEERTG 48 (73)
T ss_pred HHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 34689999999999765555444443333333333
No 281
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.21 E-value=3.4e+02 Score=26.18 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCC---ccc--eeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 304 AMATMDIIKLHGGT---PAN--FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 304 ~m~t~D~i~~~gg~---~aN--flD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
+.+++|.|+..||- +-. ..|.++ ++++..++.+-+.++++|.+|+ |+.++. ++.++...+++.++-.
T Consensus 22 ~~lA~~~iNa~ggi~G~~ielv~~D~~~--~p~~a~~~a~~li~~~~v~aii----G~~~s~--~~~a~~~~~~~~~ip~ 93 (332)
T cd06344 22 VAQAQTEINLQGGINGKLLKVVIANDGN--DPEIAKKVADELVKDPEILGVV----GHYSSD--ATLAALDIYQKAKLVL 93 (332)
T ss_pred HHHHHHHHHhcCCCCCCeEEEEEECCCC--ChHHHHHHHHHHhcccCceEEE----cCCCcH--HHHHHHHHHhhcCceE
Confidence 45688999988864 333 345555 4566667777777778887776 665443 3445666676655433
No 282
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=25.11 E-value=1.5e+02 Score=27.53 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=39.9
Q ss_pred HHHHHHcCCCccceeecCCCC-CHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcceEEeecce
Q 016159 308 MDIIKLHGGTPANFLDVGGNA-SEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNY 386 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a-~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~~~~~~~~~ 386 (394)
.|.+..+|.......-.-+.. +.+.-+++++-++++. .++|+ ...|.+|.|++++++++++ .+.+|-++-
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ai~-------~~~d~~A~gv~~al~~~gv-~vigfD~~~ 212 (260)
T cd06304 142 AAGAKSVNPDITVLVIYTGSFFDPAKGKEAALALIDQG-ADVIF-------AAAGGTGPGVIQAAKEAGV-YAIGVDSDQ 212 (260)
T ss_pred HHHHHHhCCCcEEEEEEecCccCcHHHHHHHHHHHhCC-CCEEE-------EcCCCCchHHHHHHHHcCC-EEEeecCch
Confidence 455555554332211112222 2344555566555532 37776 4457788999999999992 267776653
No 283
>PRK07550 hypothetical protein; Provisional
Probab=24.84 E-value=2.9e+02 Score=27.53 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCccEEEEE---ccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 325 GGNASEGQVVEAFKILTSDEKVKAILVN---IFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 325 gG~a~~~~~~~a~~~~l~~~~v~~i~vn---i~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
|...+.+.+.++++ +++++++++ -+.|.+-..+--+.|++.++++++-+
T Consensus 148 ~~~~~~~~l~~~~~-----~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~i 199 (386)
T PRK07550 148 GLLPDPAAAEALIT-----PRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIAL 199 (386)
T ss_pred CCCCCHHHHHHHhc-----ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEE
Confidence 44567777776663 367787763 45565555556688888888877544
No 284
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=24.62 E-value=3.6e+02 Score=22.82 Aligned_cols=49 Identities=27% Similarity=0.399 Sum_probs=39.7
Q ss_pred cceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcC
Q 016159 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVS 375 (394)
Q Consensus 319 aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~ 375 (394)
-||+=+....+.+.+.++|+-++.++++-.|+|+ +.+|+-|-..+.++.
T Consensus 34 ~nf~~v~~~t~~eei~~~~~~~l~~~digIIlIt--------e~~a~~i~~~I~~~~ 82 (115)
T TIGR01101 34 PNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILIN--------QHIAEMIRHAVDAHT 82 (115)
T ss_pred cceeeecCCCCHHHHHHHHHHHhhcCCeEEEEEc--------HHHHHHhHHHHHhcC
Confidence 5899888889999999999999999998888863 456777767777665
No 285
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=24.51 E-value=2.1e+02 Score=28.88 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhc---CCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCC-cc-eEEeecceE
Q 016159 330 EGQVVEAFKILTS---DEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSA-LD-CFGFHSNYF 387 (394)
Q Consensus 330 ~~~~~~a~~~~l~---~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~-~~-~~~~~~~~~ 387 (394)
.+..+++|.-++. +.+|+.|+| -+|=.-.+.-..-.-..++++.+.. .. +|.||||+=
T Consensus 22 ~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD 86 (390)
T COG0420 22 LEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHD 86 (390)
T ss_pred hHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCC
Confidence 4455555554433 478899998 6664444444444556677777653 33 999999973
No 286
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=24.35 E-value=1.2e+02 Score=25.41 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=38.8
Q ss_pred ceeEEecC-hhHHHHHHHHHHHcC---CCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159 293 EIGCMVNG-AGLAMATMDIIKLHG---GTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (394)
Q Consensus 293 ~Ig~~~nG-aGl~m~t~D~i~~~g---g~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ 354 (394)
.++++.-| --.+.+|........ |=..--..+..+.+.+.+.+.++-+..||+|.||+|-.|
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq~P 96 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILVQLP 96 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEESS
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEcCC
Confidence 44444444 334555655544322 223345577889999999999999999999999999644
No 287
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=24.22 E-value=1.6e+02 Score=27.25 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCcc--EEEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 331 GQVVEAFKILTSDEKVK--AILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 331 ~~~~~a~~~~l~~~~v~--~i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
..+...+..+-...+.+ .+.||.+||-. .-+.+|.++++.++.++
T Consensus 38 ~~i~~~L~~l~~~~~~~~I~l~INSpGG~v---~ag~aI~d~i~~~~~~V 84 (197)
T PRK14512 38 ELFQEKILLLEALDSKKPIFVYIDSEGGDI---DAGFAIFNMIRFVKPKV 84 (197)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCCH---HHHHHHHHHHHhCCCCE
Confidence 44444554444412223 35569999964 33578888988887766
No 288
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=24.17 E-value=1.4e+02 Score=29.97 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=52.0
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCcc-------------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCC
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPA-------------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~a-------------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi 357 (394)
++.+++++.||. |.+|| -.-|+=-.|+++++..|.+.+.++++|=-|+=|--|=+
T Consensus 44 ~~kV~lIsGGGS------------GHEPah~GfVG~GmLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~iv~NYtGD~ 111 (329)
T TIGR02363 44 NGKVALVSGGGS------------GHEPAHAGFVGYGMLDAAVPGEVFTSPTPDQILEAIKAVDQGAGVLLIVKNYTGDV 111 (329)
T ss_pred CCCEEEEecCCc------------cccccccccccCCccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHh
Confidence 478999988774 77775 45567778999999999999988765432222888888
Q ss_pred CChHHHHHHHHHHHHHcCCcc
Q 016159 358 MKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 358 ~~~d~vA~gii~a~~~~~~~~ 378 (394)
.+++..|+- .+..++++
T Consensus 112 lnF~mA~E~----a~~eGi~v 128 (329)
T TIGR02363 112 MNFEMAAEL----AEDEGIKV 128 (329)
T ss_pred ccHHHHHHH----HHHcCCcE
Confidence 888876653 23446555
No 289
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=23.90 E-value=2.5e+02 Score=26.92 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=48.3
Q ss_pred HHHHHHHHHcC---CCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcce
Q 016159 305 MATMDIIKLHG---GTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDC 379 (394)
Q Consensus 305 m~t~D~i~~~g---g~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~~ 379 (394)
.+..|.++..| |++-.++.+-...++++..++++-+.++++|.+|+ |+. +...+..+.+.+.+.++-.+
T Consensus 26 ~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~l~~~~~v~~vv----g~~--~s~~~~~~~~~~~~~~ip~i 97 (343)
T PF13458_consen 26 ELAVDEINAAGGINGRKIELVVYDDGGDPAQAVQAARKLIDDDGVDAVV----GPL--SSAQAEAVAPIAEEAGIPYI 97 (343)
T ss_dssp HHHHHHHHHTTEETTEEEEEEEEE-TT-HHHHHHHHHHHHHTSTESEEE----ESS--SHHHHHHHHHHHHHHT-EEE
T ss_pred HHHHHHHHHhCCcCCccceeeeccCCCChHHHHHHHHHhhhhcCcEEEE----ecC--CcHHHHHHHHHHHhcCcEEE
Confidence 45668888875 67776666666667888889999998888999888 333 34556788888888765443
No 290
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=23.81 E-value=1.7e+02 Score=31.81 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhcC----------CCccE-EEEEccCCCCChHH--HHHHHHHHHHHcC-CcceEEeecceEEEE
Q 016159 328 ASEGQVVEAFKILTSD----------EKVKA-ILVNIFGGIMKCDV--IASGIVNAAKQVS-ALDCFGFHSNYFCLF 390 (394)
Q Consensus 328 a~~~~~~~a~~~~l~~----------~~v~~-i~vni~ggi~~~d~--vA~gii~a~~~~~-~~~~~~~~~~~~~~~ 390 (394)
+..+-+.+-++.|+.+ ++-+. ++||-+||.+.-+. +++.+.+.+++.+ +++.+.+-|||+..+
T Consensus 231 a~~~l~~~l~~~l~~~~d~r~~~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~~i~v~~~~~G~~~Tsl 307 (574)
T TIGR02361 231 SSDLVVQLMLKKLLDETDKRSYVKFNEGDEVVLLVNNLGGVSNLELGIIADEVVEQLALHYNIIPVRIYSGTFMTSL 307 (574)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeeecccccC
No 291
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=23.78 E-value=57 Score=33.41 Aligned_cols=98 Identities=24% Similarity=0.252 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHcCCC----CCCceeeCC---------------HHHHHHHH----HHhCCCCCc-EEEEEeeecCCCC
Q 016159 29 NIHEYQGAELMAKYGIN----VPKGLAVAS---------------VDEVKKAI----QDAFPDHKE-LVVKSQILAGGRG 84 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIp----vp~~~~~~s---------------~eea~~~a----~~lg~~~~P-vVvK~q~~~ggRg 84 (394)
..++.-+|++-+-.||. .|-+..|.. .|+..+.. ++.|-...| |+||++. |.=|
T Consensus 196 ~~Y~~va~eFa~~~~IDPWlInp~f~~c~~vdF~~~~G~~~La~~Vd~lL~kir~KY~eygI~e~PfV~VKAD~--GTYG 273 (404)
T PF08886_consen 196 KAYDEVAKEFAKLIGIDPWLINPYFEQCGGVDFQEREGEECLASAVDQLLAKIRKKYKEYGIKEKPFVFVKADA--GTYG 273 (404)
T ss_dssp HHHHHHHHHHHHHHT--GGGG---EEEEE---TTSSTTHHHHHHHHHHHHHHHHHHHHHHT--S---EEEEEE---GGG-
T ss_pred HHHHHHHHHHHHhcCCCccccccchhccCCccCCccccHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCC--CCCC
Confidence 36677889999888986 244444322 22222222 233412245 7799985 3223
Q ss_pred CCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCee
Q 016159 85 LGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE 142 (394)
Q Consensus 85 K~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E 142 (394)
- ||..+ |.+|+...-++-..+-. ....|..++.|+|||-+. ..|
T Consensus 274 M---------GImtV~~~~ev~~LNrK~RnKM~----~~Keg~~v~~VIIQEGV~-T~E 318 (404)
T PF08886_consen 274 M---------GIMTVKSGDEVLGLNRKQRNKMS----VIKEGLEVSEVIIQEGVY-TFE 318 (404)
T ss_dssp E---------EEEEESSGGGGSS--HHHHHHHH-----SSSSS---EEEEEE------E
T ss_pred c---------eEEEecCHHHHHHHhHHHhhhhh----hhcCCCccceeEEecCcc-hhh
Confidence 2 68888 99998544333322111 123688999999999886 344
No 292
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=23.77 E-value=46 Score=28.83 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCccEEEE-EccCCCCChHHHHHHHHH
Q 016159 331 GQVVEAFKILTSDEKVKAILV-NIFGGIMKCDVIASGIVN 369 (394)
Q Consensus 331 ~~~~~a~~~~l~~~~v~~i~v-ni~ggi~~~d~vA~gii~ 369 (394)
+.+.+.+=.-|+|.+|-+|++ |+|+.| .+|+.||.
T Consensus 96 e~~~kGVVfYLrd~~VvGillWNvf~~~----~~AR~ii~ 131 (133)
T PF14721_consen 96 EDYGKGVVFYLRDDRVVGILLWNVFNRM----PIARKIIA 131 (133)
T ss_dssp GG-SEEEEEEEETTEEEEEEEES--S-H----HHHHHHHH
T ss_pred cccCceEEEEEcCCeEEEEEEeeccCcc----HHHHHHhh
Confidence 444455445578899988766 999976 57777764
No 293
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=23.59 E-value=5.2e+02 Score=22.93 Aligned_cols=81 Identities=25% Similarity=0.240 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEE---EccCCCCChHHHHHHHHHHHHHcCC---
Q 016159 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILV---NIFGGIMKCDVIASGIVNAAKQVSA--- 376 (394)
Q Consensus 303 l~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~v---ni~ggi~~~d~vA~gii~a~~~~~~--- 376 (394)
+--.+.+.+..+|....|.--+ -=|..-.+--+.+.+++..+.++++. -|=|+...++.|+..+.+.+.+..+
T Consensus 30 l~~ga~~~l~~~gv~~~~i~v~-~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H~e~V~~~v~~gl~~v~l~~~ 108 (154)
T PRK00061 30 LLEGALDALKRHGVSEENIDVV-RVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPHFDYVANEVAKGLADVSLETG 108 (154)
T ss_pred HHHHHHHHHHHcCCCccceEEE-ECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCchHHHHHHHHHHHHHHHHhccC
Confidence 4455678888888666655433 24555666667777777777999876 4447766677777777777666544
Q ss_pred -cceEEeec
Q 016159 377 -LDCFGFHS 384 (394)
Q Consensus 377 -~~~~~~~~ 384 (394)
.+.|++=.
T Consensus 109 ~PV~~GVLt 117 (154)
T PRK00061 109 VPVGFGVLT 117 (154)
T ss_pred CCEEEEecC
Confidence 33777643
No 294
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=23.37 E-value=1.7e+02 Score=27.22 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=29.9
Q ss_pred cCCCCCHHH---HHHHHHHHhcCCCccE--EEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 324 VGGNASEGQ---VVEAFKILTSDEKVKA--ILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 324 ~gG~a~~~~---~~~a~~~~l~~~~v~~--i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
++|..+++. +...+..+-..+..+. +.||.+||-. .-+.+|.++++.++.++
T Consensus 40 l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v---~~g~~I~d~i~~~~~~v 96 (207)
T PRK12553 40 LGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSV---TAGDAIYDTIQFIRPDV 96 (207)
T ss_pred EcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcH---HHHHHHHHHHHhcCCCc
Confidence 344444433 3344444444332333 5559999864 34578888888887665
No 295
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=23.23 E-value=5.7e+02 Score=23.20 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcce
Q 016159 329 SEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDC 379 (394)
Q Consensus 329 ~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~~ 379 (394)
+.+.+.+||+ +++++|++++.-...--.....+++|.++.+++.|
T Consensus 54 ~~~~l~~al~------g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 54 DPESLVAALK------GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp -HHHHHHHHT------TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred CHHHHHHHHc------CCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence 5566666664 68888876654434555677999999999998884
No 296
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=23.08 E-value=1.4e+02 Score=28.70 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHh-cC-CCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc--c-eEEeecc
Q 016159 329 SEGQVVEAFKILT-SD-EKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL--D-CFGFHSN 385 (394)
Q Consensus 329 ~~~~~~~a~~~~l-~~-~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~--~-~~~~~~~ 385 (394)
+.+..+++++-++ +. |.+++|+. .-|.+|.|+++++++.+.. + +.+|-++
T Consensus 166 ~~~~~~~~~~~ll~~~~~~~~aI~~-------~~D~~A~g~~~al~~~g~~~di~Vvg~d~~ 220 (302)
T TIGR02634 166 LPENALRIMENALTANDNKVDAVVA-------SNDATAGGAIQALTAQGLAGKVPISGQDAD 220 (302)
T ss_pred CHHHHHHHHHHHHHhCCCCccEEEE-------CCCchHHHHHHHHHHCCCCCCeEEEcCCCC
Confidence 4455566666555 33 67999993 4577899999999999864 2 6666654
No 297
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=23.07 E-value=2.3e+02 Score=28.49 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcC---CCccEEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEEE
Q 016159 332 QVVEAFKILTSD---EKVKAILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFCL 389 (394)
Q Consensus 332 ~~~~a~~~~l~~---~~v~~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~~ 389 (394)
-+.+.++.++.+ +.--++|||-.||....+. +++-+.+.+++.++++.+.+-|||+-.
T Consensus 232 ~~~el~~~l~~~~~~~~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~~i~i~~~~~G~~~Ts 294 (323)
T COG2376 232 LAKELVDKLLAEKLEQDEVAVLVNGLGATPLMELYILYNRVARLLAAKGITIERTLVGNYMTS 294 (323)
T ss_pred HHHHHHHHHhcccCCCCcEEEEecCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEeeecceecc
Confidence 344566666665 2112578899999766544 568899999999999999999999853
No 298
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This entry represents the N-terminal adenylation domain of NAD-dependent DNA ligases. These are proteins of about 75 to 85 Kd whose sequence is well conserved [, ]. They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd. Despite a complete lack of detectable sequence similarity, the fold of the central core of this adenyaltion domain shares homology with the equivalent region of ATP-dependent DNA ligases [, ].; GO: 0003911 DNA ligase (NAD+) activity; PDB: 1ZAU_A 3SGI_A 1B04_A 3JSL_A 3JSN_A 1DGS_A 1V9P_A 3PN1_A 3BAC_A 3UQ8_A ....
Probab=22.96 E-value=1.4e+02 Score=29.70 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHcCCCCCCc-eeeCCHHHHHHHHHHhC
Q 016159 31 HEYQGAELMAKYGINVPKG-LAVASVDEVKKAIQDAF 66 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~~-~~~~s~eea~~~a~~lg 66 (394)
+.++..+.|++.|++|++. ..+.+.+|+.+..+.+.
T Consensus 235 t~~e~l~~L~~~GF~v~~~~~~~~~~~~v~~~~~~~~ 271 (315)
T PF01653_consen 235 TQSERLQFLKEWGFPVNPYIRFCKSIEEVEEYIEEWE 271 (315)
T ss_dssp BHHHHHHHHHHTT--B-TTEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcceEecCCHHHHHHHHHHHH
Confidence 5688999999999999764 77899999988887653
No 299
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=22.92 E-value=5e+02 Score=25.54 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCC---CccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcC
Q 016159 304 AMATMDIIKLHGG---TPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVS 375 (394)
Q Consensus 304 ~m~t~D~i~~~gg---~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~ 375 (394)
+.++.|.|+..|| ++-...-.--..++++-..+.+-+..+.+|.+|+ |++.+. ++.+++..+.+.+
T Consensus 24 ~~lav~~iN~~GGi~G~~i~l~~~Dd~~~p~~a~~~a~~Lv~~~~V~~ii----G~~~S~--~~~a~~~~~~~~~ 92 (359)
T TIGR03407 24 ELMAIEEINASGGVLGKKIEPVVEDGASDWPTFAEKARKLITQDKVAAVF----GCWTSA--SRKAVLPVFEENN 92 (359)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEE----cCCcHH--HHHHHHHHHhccC
Confidence 4568899998885 5544443333346666667777777777888877 655443 4456666666654
No 300
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=22.79 E-value=2.6e+02 Score=24.83 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=35.5
Q ss_pred eeecCCCCCHHHHHHHHHHH----hcCCCcc-EEEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 321 FLDVGGNASEGQVVEAFKIL----TSDEKVK-AILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 321 flD~gG~a~~~~~~~a~~~~----l~~~~v~-~i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
.+-++|..+.+.......-+ ..++.-. .|+||.+||-. .-+-.|.++++..+.++
T Consensus 18 ~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v---~~g~~i~~~i~~~~~~v 77 (182)
T PF00574_consen 18 IIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDV---DAGLAIYDAIRSSKAPV 77 (182)
T ss_dssp EEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCH---HHHHHHHHHHHHSSSEE
T ss_pred EEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCcc---HHHHHHHHHHHhcCCCe
Confidence 44556777776666554433 2333322 36669999975 34578999999987776
No 301
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=22.19 E-value=3.1e+02 Score=27.12 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=45.0
Q ss_pred ccCCceeEEecChhHHH-HHHHHHHHcCC----Cccc--eeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChH
Q 016159 289 GLDGEIGCMVNGAGLAM-ATMDIIKLHGG----TPAN--FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCD 361 (394)
Q Consensus 289 ~l~G~Ig~~~nGaGl~m-~t~D~i~~~gg----~~aN--flD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d 361 (394)
.+.|...........++ +++|.|+..|| .+-. +.|..++ +++..++..-++.+++|.+|+ |+. |.
T Consensus 7 ~~sG~~~~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~~--~~~a~~~a~~l~~~~~v~aii----G~~--~s 78 (389)
T cd06352 7 PWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTECS--ESVALLAAVDLYWEHNVDAFI----GPG--CP 78 (389)
T ss_pred CCCCCCCchhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCCc--hhhhHHHHHHHHhhcCCcEEE----CCC--Ch
Confidence 34554444444433433 67899998873 3333 3455554 344444444444557888877 554 44
Q ss_pred HHHHHHHHHHHHcCCc
Q 016159 362 VIASGIVNAAKQVSAL 377 (394)
Q Consensus 362 ~vA~gii~a~~~~~~~ 377 (394)
.++..+...+.+.++-
T Consensus 79 ~~~~a~~~~~~~~~ip 94 (389)
T cd06352 79 YACAPVARLAAHWNIP 94 (389)
T ss_pred hHHHHHHHHHhcCCCC
Confidence 4556666666666543
No 302
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.66 E-value=2.8e+02 Score=25.44 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=27.6
Q ss_pred CccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 345 KVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 345 ~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
+.++|| ..-|.+|.|+++++++++.++ +++|-++..+
T Consensus 177 ~~~ai~-------~~~d~~a~g~~~a~~~~g~~~p~di~vig~d~~~~~ 218 (268)
T cd06277 177 LPTAFF-------CSNDGVAFLLIKVLKEMGIRVPEDVSVIGFDDIEYA 218 (268)
T ss_pred CCCEEE-------ECCcHHHHHHHHHHHHcCCCCCCcceEEeecCchHH
Confidence 356777 345678999999999998753 8888776543
No 303
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.53 E-value=3.2e+02 Score=26.39 Aligned_cols=82 Identities=23% Similarity=0.315 Sum_probs=47.8
Q ss_pred EccCCceeEEecCh-hHHHHHHHHHHHcCC---Cccc--eeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChH
Q 016159 288 IGLDGEIGCMVNGA-GLAMATMDIIKLHGG---TPAN--FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCD 361 (394)
Q Consensus 288 ~~l~G~Ig~~~nGa-Gl~m~t~D~i~~~gg---~~aN--flD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d 361 (394)
.++.|..+...... -.+.+++|.++..|| ++-. ..|..+ ++++..++.+-+..+++|.+|+ |+. +.
T Consensus 6 ~plsG~~a~~g~~~~~g~~~a~~~iNa~ggi~G~~v~lv~~D~~~--~p~~a~~~~~~li~~~~v~~ii----G~~--~s 77 (344)
T cd06348 6 LALTGNAALYGQEQLAGLKLAEDRFNQAGGVNGRPIKLVIEDSGG--DEAEAINAFQTLINKDRVLAII----GPT--LS 77 (344)
T ss_pred EeccCchhhcCHhHHHHHHHHHHHHhhcCCcCCcEEEEEEecCCC--ChHHHHHHHHHHhhhcCceEEE----CCC--Cc
Confidence 34556554443322 235678899998885 4433 345554 4566666777777777787776 544 33
Q ss_pred HHHHHHHHHHHHcCCc
Q 016159 362 VIASGIVNAAKQVSAL 377 (394)
Q Consensus 362 ~vA~gii~a~~~~~~~ 377 (394)
.++.++...+++.++-
T Consensus 78 ~~~~a~~~~~~~~~ip 93 (344)
T cd06348 78 QQAFAADPIAERAGVP 93 (344)
T ss_pred HHHHhhhHHHHhCCCC
Confidence 4455555666665543
No 304
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=21.52 E-value=5.6e+02 Score=23.26 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=47.0
Q ss_pred ceeEEec----ChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159 293 EIGCMVN----GAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (394)
Q Consensus 293 ~Ig~~~n----GaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii 368 (394)
+|+++.. |....-...+.+..+|.+......+..+. +.+...+.-+++. +.++|++...+ ..+.+++
T Consensus 137 ~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~~-~~~~vi~~~~~------~~~~~~~ 207 (298)
T cd06268 137 KVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGA--TDFSPLIAKLKAA-GPDAVFLAGYG------GDAALFL 207 (298)
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCC--ccHHHHHHHHHhc-CCCEEEEcccc------chHHHHH
Confidence 6666643 23334445567777787654443333222 3344455444443 45566643332 3457788
Q ss_pred HHHHHcCCcc-eEEeecc
Q 016159 369 NAAKQVSALD-CFGFHSN 385 (394)
Q Consensus 369 ~a~~~~~~~~-~~~~~~~ 385 (394)
+++++.+.+. ++++.++
T Consensus 208 ~~~~~~g~~~~~~~~~~~ 225 (298)
T cd06268 208 KQAREAGLKVPIVGGDGA 225 (298)
T ss_pred HHHHHcCCCCcEEecCcc
Confidence 9999988766 6665554
No 305
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=21.46 E-value=3e+02 Score=26.97 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=39.5
Q ss_pred HHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc---eEEee
Q 016159 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---CFGFH 383 (394)
Q Consensus 308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---~~~~~ 383 (394)
.+.+.++|.+.... .-++-+.+..++.++ ++.+.|++++|+. +|..|.++++++++.++.. +.+|.
T Consensus 195 ~~~l~~~~i~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~--------~d~~A~ga~~al~~~g~~~di~Vvg~~ 264 (343)
T PRK10936 195 RAAIAGSDVRIVDI--AYGDNDKELQRNLLQELLERHPDIDYIAG--------SAVAAEAAIGELRGRNLTDKIKLVSFY 264 (343)
T ss_pred HHHHhcCCCEEEEe--ecCCCcHHHHHHHHHHHHHhCCCccEEEe--------CCHHHHHHHHHHHhcCCCCCeEEEEeC
Confidence 44555555444332 223334444444444 4445677888751 2578999999999988643 66664
Q ss_pred cc
Q 016159 384 SN 385 (394)
Q Consensus 384 ~~ 385 (394)
++
T Consensus 265 ~~ 266 (343)
T PRK10936 265 LS 266 (343)
T ss_pred CC
Confidence 43
No 306
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=21.24 E-value=7.2e+02 Score=25.76 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=61.3
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCC-c-cceee----cCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHH
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGT-P-ANFLD----VGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~-~-aNflD----~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~v 363 (394)
++-+||+++.-.|.+. -|.+....-+ | +++.- +=|.-.+..+.+|++.+...+.+++|+|-= ||-..-|..
T Consensus 128 ~p~~i~vits~~~aa~--~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~R-GGGs~eDL~ 204 (432)
T TIGR00237 128 FPKRVGVITSQTGAAL--ADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGR-GGGSLEDLW 204 (432)
T ss_pred CCCEEEEEeCCccHHH--HHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEec-CCCCHHHhh
Confidence 4569999999888765 4777665432 4 34443 346777889999999988777788877643 554555555
Q ss_pred H---HHHHHHHHHcCCcceEE
Q 016159 364 A---SGIVNAAKQVSALDCFG 381 (394)
Q Consensus 364 A---~gii~a~~~~~~~~~~~ 381 (394)
+ +.+++|+-..++.++=+
T Consensus 205 ~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 205 SFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred hcCcHHHHHHHHcCCCCEEEe
Confidence 4 78888887766655433
No 307
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=21.21 E-value=1.8e+02 Score=29.27 Aligned_cols=64 Identities=25% Similarity=0.335 Sum_probs=48.0
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCcc-------------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCC
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPA-------------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~a-------------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi 357 (394)
++.+++++.||. |.+|| -.-|+=-.|+++++..|++.+.+.++|=.|+=|--|=.
T Consensus 43 ~~kV~lIsGGGS------------GHEPah~GfVG~GmLdaav~G~VFaSPs~~~Il~ai~av~~~~GvL~iv~NYtGD~ 110 (331)
T PRK14481 43 PGKVALVSGGGS------------GHEPAHAGFVGEGMLDAAVCGAVFTSPTPDQILEAIKAVDTGAGVLLIVKNYSGDV 110 (331)
T ss_pred CCcEEEEecCCc------------cccccccccccCCccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHh
Confidence 478999988775 77776 45567778999999999999987765433333888888
Q ss_pred CChHHHHHH
Q 016159 358 MKCDVIASG 366 (394)
Q Consensus 358 ~~~d~vA~g 366 (394)
.+++..|+-
T Consensus 111 lnF~lA~E~ 119 (331)
T PRK14481 111 MNFEMAAEL 119 (331)
T ss_pred ccHHHHHHH
Confidence 888876653
No 308
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=20.84 E-value=2.8e+02 Score=29.22 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHhcC-CC---ccEEEE-EccCCCCC--hHHHHHHHHHHHHHcCCcc
Q 016159 325 GGNASEGQVVEAFKILTSD-EK---VKAILV-NIFGGIMK--CDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 325 gG~a~~~~~~~a~~~~l~~-~~---v~~i~v-ni~ggi~~--~d~vA~gii~a~~~~~~~~ 378 (394)
.|+.+.+++.++++- .. ++ +++++. |.+||..- ++. +.|.+..+++++++
T Consensus 158 tgnlD~d~Le~~I~~--~~~~~~~lV~a~itvn~~GGqpvs~~~m--~~I~elA~~~Gl~V 214 (460)
T PRK13237 158 KGNVDLDKLQALIDE--VGAENIAYICLAVTVNLAGGQPVSMANM--RAVRELCDKHGIKV 214 (460)
T ss_pred CCCcCHHHHHHHhcc--ccCCccCceEEEEecccCCCeeCCHHhH--HHHHHHHHHcCCEE
Confidence 788999999988762 11 22 344443 88887442 233 66778888888887
No 309
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=20.77 E-value=3e+02 Score=25.37 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc---eEEeecc
Q 016159 326 GNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---CFGFHSN 385 (394)
Q Consensus 326 G~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---~~~~~~~ 385 (394)
++.+.+.-+++++-++ +.|.+++|+. ..|..|.++++++++.+++. +.+|-++
T Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~i~~-------~~d~~a~~~~~al~~~g~~~di~vig~d~~ 215 (271)
T cd06314 159 DEEDFAKAKSNAEDALNAHPDLKCMFG-------LYAYNGPAIAEAVKAAGKLGKVKIVGFDED 215 (271)
T ss_pred CccCHHHHHHHHHHHHHhCCCccEEEe-------cCCccHHHHHHHHHHcCCCCceEEEEeCCC
Confidence 4444455555555555 4577888872 23456678899999988742 5666554
No 310
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=20.67 E-value=3.8e+02 Score=22.55 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCccEEEE-EccCCCCChHH----HHHHHHHHHHHcCCcc--eEEe-ecceEE
Q 016159 334 VEAFKILTSDEKVKAILV-NIFGGIMKCDV----IASGIVNAAKQVSALD--CFGF-HSNYFC 388 (394)
Q Consensus 334 ~~a~~~~l~~~~v~~i~v-ni~ggi~~~d~----vA~gii~a~~~~~~~~--~~~~-~~~~~~ 388 (394)
++.++..+..--...|++ |-|+|.+.+.. +.+.+.++++.++++. .+=+ .+.||.
T Consensus 54 R~I~~~al~~~A~~vIl~HNHPsG~~~PS~~D~~~T~~L~~~~~~l~I~llDHiIv~~~~~~S 116 (123)
T PF04002_consen 54 REIFRRALRLNASSVILAHNHPSGDPEPSDADIALTRRLKKAARLLGIELLDHIIVGDGGYFS 116 (123)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-TTS--S--HHHHHHHHHHHHHHHHHT-EEEEEEEEESSEEEE
T ss_pred HHHHHHHHhhCCceEEEEEEcCCCCCCCCHhHHHHHHHHHHHHHHcCCeeeeEEEEeCCcEEE
Confidence 334555555444455666 99999887522 4589999999999888 4433 566654
No 311
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=20.63 E-value=2.6e+02 Score=28.14 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCC--CccEEEEEccCCCCChHHHHHHHHHHH
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDE--KVKAILVNIFGGIMKCDVIASGIVNAA 371 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~--~v~~i~vni~ggi~~~d~vA~gii~a~ 371 (394)
..|.|...|....-|-++.++|+.+.+.++.+...+.. +.+.|+ -.||- ++-++|++|.-.+
T Consensus 41 v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~II--aiGGG-S~iD~AKaia~~~ 104 (347)
T cd08184 41 LISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIV--GIGGG-STLDVAKAVSNML 104 (347)
T ss_pred HHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEE--EeCCc-HHHHHHHHHHHHH
Confidence 45667777878888989999999999999999988642 777766 45554 4556788775443
No 312
>PRK09701 D-allose transporter subunit; Provisional
Probab=20.45 E-value=3.7e+02 Score=25.83 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=29.8
Q ss_pred HHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc---eEEeecce
Q 016159 338 KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---CFGFHSNY 386 (394)
Q Consensus 338 ~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---~~~~~~~~ 386 (394)
+++.+.|.+++|+ ...|..|.|+++++++.+.+. +.+|-++.
T Consensus 209 ~ll~~~~~~~~I~-------~~~d~~A~g~~~al~~~G~~~dv~vvg~d~~~ 253 (311)
T PRK09701 209 NVLQRNPNIKAIY-------CANDTMAMGVAQAVANAGKTGKVLVVGTDGIP 253 (311)
T ss_pred HHHHhCCCCCEEE-------ECCcchHHHHHHHHHHcCCCCCEEEEEeCCCH
Confidence 3444556788888 445678999999999988742 66665543
No 313
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=20.06 E-value=1e+02 Score=31.02 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=45.0
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCcc-------------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCC
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPA-------------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~a-------------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~gg 356 (394)
.++++++++.||. |.+|+ -.-|+=-.|+++++.+|++.+.++++|=-|+-|--|=
T Consensus 26 ~~~kV~lIsGGGS------------GHEP~~~GfVG~GmLdAav~G~VFaSPs~~qI~~ai~~~~~~~Gvl~iv~NYtGD 93 (325)
T PF02733_consen 26 PKDKVALISGGGS------------GHEPAHAGFVGKGMLDAAVCGDVFASPSADQILAAIKAVDSGKGVLLIVKNYTGD 93 (325)
T ss_dssp -TTS-EEEEEEEE------------SSTTTTGGGBSCTSBSEEEEEEETS---HHHHHHHHHHH-SSS-EEEEEESSHHH
T ss_pred CCCCEEEEecCCC------------CcccchhhhccCCccceEeeCCCcCCCCHHHHHHHHHhccCCCCEEEEEecchHH
Confidence 4689999988775 77876 4556778999999999999997776653233277677
Q ss_pred CCChHHHHHHHHHHHHHcCCcc
Q 016159 357 IMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 357 i~~~d~vA~gii~a~~~~~~~~ 378 (394)
..++++.|+- .++.++++
T Consensus 94 ~lNF~~A~E~----a~~~Gi~v 111 (325)
T PF02733_consen 94 VLNFGMAAEK----ARAEGIKV 111 (325)
T ss_dssp HHHHHHHHHH----HHHTT--E
T ss_pred HhhHHHHHHH----HHhCCCCE
Confidence 7777766553 23336655
Done!