Query 016159
Match_columns 394
No_of_seqs 247 out of 2051
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:53:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fp4_B Succinyl-COA ligase [GD 100.0 1E-89 3.5E-94 693.9 39.4 356 28-386 1-360 (395)
2 2nu8_B SCS-beta, succinyl-COA 100.0 6.3E-87 2.1E-91 672.7 38.9 349 28-386 1-353 (388)
3 3ufx_B Succinyl-COA synthetase 100.0 1E-83 3.6E-88 650.7 33.4 340 28-385 1-343 (397)
4 3mwd_A ATP-citrate synthase; A 100.0 5.1E-80 1.7E-84 626.2 25.4 338 28-386 4-383 (425)
5 3pff_A ATP-citrate synthase; p 100.0 7.5E-77 2.6E-81 641.1 23.8 337 28-385 4-382 (829)
6 1wr2_A Hypothetical protein PH 100.0 8.3E-36 2.8E-40 281.0 20.6 209 24-257 14-238 (238)
7 2csu_A 457AA long hypothetical 99.7 8.8E-17 3E-21 164.9 11.6 202 155-375 150-401 (457)
8 3lp8_A Phosphoribosylamine-gly 99.3 6.3E-11 2.2E-15 120.7 16.4 104 27-152 119-223 (442)
9 3aw8_A PURK, phosphoribosylami 99.2 3.5E-11 1.2E-15 119.0 12.3 104 27-161 92-197 (369)
10 4eg0_A D-alanine--D-alanine li 99.2 1.1E-10 3.9E-15 113.1 14.5 105 28-161 104-213 (317)
11 3e5n_A D-alanine-D-alanine lig 99.2 1.5E-10 5.2E-15 116.0 15.7 103 28-160 156-263 (386)
12 3jrx_A Acetyl-COA carboxylase 99.2 2.3E-10 7.7E-15 120.6 17.4 105 30-161 179-313 (587)
13 3k5i_A Phosphoribosyl-aminoimi 99.2 8.5E-11 2.9E-15 118.3 13.1 97 27-152 119-219 (403)
14 3glk_A Acetyl-COA carboxylase 99.2 2.1E-10 7.1E-15 119.9 16.0 107 28-161 161-297 (540)
15 2cqy_A Propionyl-COA carboxyla 99.2 2.8E-12 9.4E-17 104.4 0.3 97 30-147 7-106 (108)
16 1vkz_A Phosphoribosylamine--gl 99.2 3.4E-10 1.2E-14 114.0 15.6 104 27-152 102-206 (412)
17 3ouz_A Biotin carboxylase; str 99.2 4.1E-10 1.4E-14 114.3 16.2 169 30-238 118-298 (446)
18 4e4t_A Phosphoribosylaminoimid 99.1 1.4E-10 4.7E-15 117.5 11.6 104 27-161 129-237 (419)
19 1a9x_A Carbamoyl phosphate syn 99.1 1.3E-10 4.4E-15 130.4 12.5 99 30-153 127-226 (1073)
20 3i12_A D-alanine-D-alanine lig 99.1 3.9E-10 1.3E-14 111.9 14.3 97 28-152 137-238 (364)
21 3tqt_A D-alanine--D-alanine li 99.1 7.2E-10 2.5E-14 110.6 13.9 96 28-151 137-238 (372)
22 3mjf_A Phosphoribosylamine--gl 99.1 4.3E-10 1.5E-14 114.2 11.9 103 28-152 104-207 (431)
23 1w96_A ACC, acetyl-coenzyme A 99.1 2.2E-09 7.7E-14 112.2 17.4 101 27-152 169-296 (554)
24 4fu0_A D-alanine--D-alanine li 99.1 1.3E-09 4.4E-14 107.8 14.5 96 29-152 137-236 (357)
25 3q2o_A Phosphoribosylaminoimid 99.1 6.1E-09 2.1E-13 103.8 19.2 99 27-153 108-207 (389)
26 2dzd_A Pyruvate carboxylase; b 99.0 2.8E-09 9.7E-14 108.5 16.2 106 27-153 116-224 (461)
27 3k3p_A D-alanine--D-alanine li 99.0 1.8E-09 6.2E-14 108.2 14.3 95 29-151 159-259 (383)
28 2dwc_A PH0318, 433AA long hypo 99.0 4.6E-09 1.6E-13 106.0 15.7 101 28-151 117-219 (433)
29 3n6r_A Propionyl-COA carboxyla 99.0 7E-10 2.4E-14 118.9 8.6 171 28-238 112-294 (681)
30 3eth_A Phosphoribosylaminoimid 99.0 3.8E-09 1.3E-13 104.8 12.6 94 28-153 76-172 (355)
31 2xcl_A Phosphoribosylamine--gl 98.9 5.3E-09 1.8E-13 105.1 13.0 102 29-152 100-202 (422)
32 3u9t_A MCC alpha, methylcroton 98.9 7.7E-10 2.6E-14 118.5 6.6 169 30-238 140-320 (675)
33 2yw2_A Phosphoribosylamine--gl 98.9 7.5E-09 2.6E-13 104.0 13.4 100 30-151 101-201 (424)
34 2yrx_A Phosphoribosylglycinami 98.9 6.3E-09 2.1E-13 105.8 12.9 102 29-152 121-223 (451)
35 1a9x_A Carbamoyl phosphate syn 98.9 1.1E-08 3.7E-13 114.9 15.4 98 30-152 673-771 (1073)
36 2qf7_A Pyruvate carboxylase pr 98.9 8.2E-10 2.8E-14 124.6 6.3 169 30-238 133-314 (1165)
37 3ln6_A Glutathione biosynthesi 98.9 1.7E-09 5.9E-14 116.9 7.9 114 31-173 484-606 (750)
38 3se7_A VANA; alpha-beta struct 98.9 1E-08 3.5E-13 100.7 12.5 94 28-151 129-223 (346)
39 2qk4_A Trifunctional purine bi 98.9 1.1E-08 3.7E-13 103.9 12.7 101 30-152 127-229 (452)
40 1ulz_A Pyruvate carboxylase N- 98.9 1.5E-08 5E-13 102.8 13.3 108 30-160 113-223 (451)
41 2ip4_A PURD, phosphoribosylami 98.9 1.1E-08 3.7E-13 102.8 11.9 99 28-152 98-197 (417)
42 3vmm_A Alanine-anticapsin liga 98.9 4.9E-08 1.7E-12 100.3 16.8 102 25-142 133-235 (474)
43 1ehi_A LMDDL2, D-alanine:D-lac 98.8 1.2E-08 4.1E-13 101.6 11.3 97 29-152 133-234 (377)
44 2vpq_A Acetyl-COA carboxylase; 98.8 1.9E-08 6.4E-13 102.0 12.8 110 29-161 112-224 (451)
45 3va7_A KLLA0E08119P; carboxyla 98.8 4.7E-09 1.6E-13 118.7 8.9 109 30-161 143-253 (1236)
46 2z04_A Phosphoribosylaminoimid 98.8 4.6E-09 1.6E-13 103.5 7.5 97 27-152 88-186 (365)
47 1kjq_A GART 2, phosphoribosylg 98.8 1.2E-08 4.1E-13 101.2 10.5 102 28-152 109-212 (391)
48 3hbl_A Pyruvate carboxylase; T 98.8 6.4E-10 2.2E-14 125.2 1.4 169 30-238 117-296 (1150)
49 3orq_A N5-carboxyaminoimidazol 98.8 1E-08 3.5E-13 102.0 9.9 102 28-160 107-210 (377)
50 2w70_A Biotin carboxylase; lig 98.8 1.8E-08 6.3E-13 102.0 11.8 104 29-153 113-220 (449)
51 3r5x_A D-alanine--D-alanine li 98.8 9.6E-09 3.3E-13 98.5 7.9 95 28-150 94-190 (307)
52 4dim_A Phosphoribosylglycinami 98.8 1.9E-08 6.6E-13 100.2 10.3 97 28-150 106-203 (403)
53 2i87_A D-alanine-D-alanine lig 98.7 3.7E-08 1.3E-12 97.3 11.4 95 30-152 128-230 (364)
54 3vot_A L-amino acid ligase, BL 98.7 7.1E-08 2.4E-12 97.0 12.2 102 30-151 111-214 (425)
55 3lwb_A D-alanine--D-alanine li 98.7 2.5E-08 8.6E-13 99.3 7.9 96 29-152 149-247 (373)
56 1iow_A DD-ligase, DDLB, D-ALA\ 98.7 7E-08 2.4E-12 91.9 9.9 93 29-150 94-195 (306)
57 3ln7_A Glutathione biosynthesi 98.6 5.6E-08 1.9E-12 105.1 8.8 95 31-153 489-589 (757)
58 1uc8_A LYSX, lysine biosynthes 98.6 3E-08 1E-12 93.0 5.8 98 28-150 85-186 (280)
59 1e4e_A Vancomycin/teicoplanin 98.6 5.6E-08 1.9E-12 95.2 6.7 93 30-152 131-224 (343)
60 2fb9_A D-alanine:D-alanine lig 98.5 8.9E-08 3E-12 93.1 6.3 94 29-152 116-210 (322)
61 2pvp_A D-alanine-D-alanine lig 98.5 1.5E-07 5.1E-12 93.5 7.4 88 29-144 147-237 (367)
62 3dmy_A Protein FDRA; predicted 98.5 8.9E-08 3E-12 98.4 5.4 126 234-374 199-361 (480)
63 2pn1_A Carbamoylphosphate synt 98.5 3.9E-07 1.3E-11 88.1 9.7 96 29-159 112-211 (331)
64 3ax6_A Phosphoribosylaminoimid 98.4 2.1E-07 7.2E-12 92.1 7.1 91 27-152 96-187 (380)
65 2r7k_A 5-formaminoimidazole-4- 98.2 3E-06 1E-10 84.1 8.8 86 28-144 121-208 (361)
66 2r85_A PURP protein PF1517; AT 98.1 1.4E-05 4.7E-10 76.9 9.9 91 29-151 98-189 (334)
67 4ffl_A PYLC; amino acid, biosy 98.0 8.3E-06 2.9E-10 80.0 7.0 78 28-153 100-178 (363)
68 1z2n_X Inositol 1,3,4-trisphos 97.9 1.7E-05 5.7E-10 76.3 7.6 94 28-150 95-190 (324)
69 1i7n_A Synapsin II; synapse, p 97.4 0.00022 7.5E-09 69.2 6.4 89 33-151 119-211 (309)
70 2p0a_A Synapsin-3, synapsin II 97.1 0.00039 1.3E-08 68.4 5.5 94 28-151 127-228 (344)
71 1gsa_A Glutathione synthetase; 97.1 0.00047 1.6E-08 65.2 5.5 88 30-148 123-214 (316)
72 2q7d_A Inositol-tetrakisphosph 97.0 0.00045 1.5E-08 68.0 4.6 90 30-151 115-217 (346)
73 1pk8_A RAT synapsin I; ATP bin 96.9 0.00087 3E-08 67.5 5.9 89 33-151 231-323 (422)
74 3df7_A Putative ATP-grAsp supe 96.9 0.00099 3.4E-08 64.0 5.6 72 27-151 106-178 (305)
75 2pbz_A Hypothetical protein; N 96.8 0.00014 4.7E-09 71.0 -0.9 81 33-153 100-181 (320)
76 3dmy_A Protein FDRA; predicted 92.9 0.5 1.7E-05 48.3 10.6 81 291-374 112-197 (480)
77 3mwd_B ATP-citrate synthase; A 92.6 0.36 1.2E-05 47.1 8.7 84 289-378 166-252 (334)
78 3dbi_A Sugar-binding transcrip 90.4 1.1 3.7E-05 42.3 9.5 89 292-387 182-282 (338)
79 2fp4_A Succinyl-COA ligase [GD 90.2 0.81 2.8E-05 43.8 8.3 83 290-373 151-234 (305)
80 1oi7_A Succinyl-COA synthetase 90.1 0.56 1.9E-05 44.5 7.1 80 290-370 143-223 (288)
81 2yv2_A Succinyl-COA synthetase 89.6 0.74 2.5E-05 43.9 7.5 79 290-369 150-229 (297)
82 2yv1_A Succinyl-COA ligase [AD 89.0 0.7 2.4E-05 44.0 6.8 66 290-355 149-215 (294)
83 2nu8_A Succinyl-COA ligase [AD 88.9 1.4 4.9E-05 41.6 8.9 80 290-370 143-223 (288)
84 3qk7_A Transcriptional regulat 87.8 1.4 4.8E-05 40.6 7.9 90 292-388 127-228 (294)
85 3d8u_A PURR transcriptional re 87.4 4.4 0.00015 36.4 10.9 88 292-386 121-220 (275)
86 1qpz_A PURA, protein (purine n 87.3 2.5 8.7E-05 39.8 9.6 89 292-387 178-278 (340)
87 3brq_A HTH-type transcriptiona 87.0 2.3 7.9E-05 38.6 8.9 89 292-387 140-240 (296)
88 2fep_A Catabolite control prot 86.8 3.4 0.00012 37.8 10.0 89 292-387 134-235 (289)
89 3bbl_A Regulatory protein of L 86.7 2.9 9.8E-05 38.2 9.4 89 292-388 126-229 (287)
90 1dbq_A Purine repressor; trans 86.6 2.9 9.8E-05 38.0 9.2 89 292-387 127-227 (289)
91 3k4h_A Putative transcriptiona 85.4 5.3 0.00018 36.2 10.4 88 292-386 132-231 (292)
92 2rgy_A Transcriptional regulat 85.2 3.4 0.00012 37.7 9.1 88 292-387 129-229 (290)
93 2csu_A 457AA long hypothetical 84.1 1.7 5.7E-05 44.0 6.8 62 292-354 150-211 (457)
94 2hsg_A Glucose-resistance amyl 83.8 4.2 0.00014 38.0 9.2 89 292-387 178-279 (332)
95 3kke_A LACI family transcripti 82.9 2.6 8.9E-05 38.9 7.2 73 307-386 153-236 (303)
96 3kjx_A Transcriptional regulat 82.7 3.1 0.00011 39.2 7.8 88 293-387 187-287 (344)
97 3clk_A Transcription regulator 82.6 3.3 0.00011 37.8 7.8 74 307-387 147-225 (290)
98 3gv0_A Transcriptional regulat 81.6 2.9 9.9E-05 38.2 6.9 74 307-387 149-228 (288)
99 3h75_A Periplasmic sugar-bindi 81.3 5.7 0.00019 37.4 9.1 87 292-386 146-244 (350)
100 3k9c_A Transcriptional regulat 80.9 3.8 0.00013 37.5 7.5 73 307-387 147-225 (289)
101 3pff_A ATP-citrate synthase; p 80.9 3 0.0001 45.4 7.5 64 290-353 653-717 (829)
102 1jye_A Lactose operon represso 80.3 6.1 0.00021 37.3 9.0 88 292-388 180-279 (349)
103 2iks_A DNA-binding transcripti 80.3 3.5 0.00012 37.6 7.1 87 292-387 139-237 (293)
104 3g85_A Transcriptional regulat 80.1 3.8 0.00013 37.2 7.2 84 293-383 129-224 (289)
105 3c3k_A Alanine racemase; struc 79.9 5.1 0.00017 36.4 8.0 86 292-387 125-224 (285)
106 2o20_A Catabolite control prot 78.5 4.6 0.00016 37.8 7.3 88 292-387 181-279 (332)
107 3gyb_A Transcriptional regulat 78.4 6 0.00021 35.6 7.9 72 307-386 138-215 (280)
108 2lqo_A Putative glutaredoxin R 78.0 7.5 0.00026 30.1 7.2 68 31-115 16-86 (92)
109 3cs3_A Sugar-binding transcrip 78.0 4.8 0.00016 36.4 7.1 85 292-386 119-216 (277)
110 2dri_A D-ribose-binding protei 77.9 11 0.00038 33.8 9.6 88 292-388 124-220 (271)
111 3l6u_A ABC-type sugar transpor 77.8 8.4 0.00029 34.8 8.8 86 292-386 136-231 (293)
112 3h5t_A Transcriptional regulat 77.8 7.3 0.00025 36.9 8.7 75 306-387 227-308 (366)
113 2h0a_A TTHA0807, transcription 76.5 4.9 0.00017 36.1 6.7 73 307-387 141-220 (276)
114 3e3m_A Transcriptional regulat 76.1 4.1 0.00014 38.6 6.3 87 293-386 189-289 (355)
115 3t7a_A Inositol pyrophosphate 76.0 0.38 1.3E-05 46.4 -1.1 46 30-78 96-154 (330)
116 3egc_A Putative ribose operon 75.9 3.6 0.00012 37.5 5.6 74 307-387 147-226 (291)
117 2qu7_A Putative transcriptiona 75.5 9.8 0.00033 34.4 8.5 88 292-387 123-227 (288)
118 3jvd_A Transcriptional regulat 75.5 6 0.0002 37.2 7.3 85 292-388 175-272 (333)
119 3h5o_A Transcriptional regulat 75.1 5.6 0.00019 37.3 6.9 89 292-387 179-279 (339)
120 2ioy_A Periplasmic sugar-bindi 73.9 11 0.00037 34.2 8.4 87 292-387 124-220 (283)
121 8abp_A L-arabinose-binding pro 73.7 13 0.00045 33.7 9.0 73 307-386 155-235 (306)
122 3rot_A ABC sugar transporter, 72.5 9.7 0.00033 34.7 7.8 85 291-385 130-227 (297)
123 1gud_A ALBP, D-allose-binding 72.3 14 0.00047 33.6 8.7 87 292-387 134-231 (288)
124 3bil_A Probable LACI-family tr 72.2 15 0.00052 34.6 9.2 86 292-388 185-282 (348)
125 3l49_A ABC sugar (ribose) tran 72.1 13 0.00043 33.5 8.4 87 292-385 126-226 (291)
126 2fvy_A D-galactose-binding per 71.6 10 0.00035 34.4 7.7 74 307-387 162-240 (309)
127 2vk2_A YTFQ, ABC transporter p 70.8 12 0.00042 34.2 8.1 86 292-386 129-230 (306)
128 3huu_A Transcription regulator 68.1 6.6 0.00022 36.1 5.5 84 292-386 145-241 (305)
129 3hs3_A Ribose operon repressor 67.8 6.1 0.00021 35.8 5.2 70 307-387 144-218 (277)
130 3brs_A Periplasmic binding pro 67.0 19 0.00065 32.3 8.4 87 292-387 132-228 (289)
131 3rst_A Signal peptide peptidas 66.7 14 0.00048 33.7 7.3 59 327-386 28-90 (240)
132 1jx6_A LUXP protein; protein-l 66.5 22 0.00074 33.0 8.9 85 292-385 176-269 (342)
133 3g1w_A Sugar ABC transporter; 66.4 18 0.00062 32.8 8.2 72 307-385 148-223 (305)
134 3miz_A Putative transcriptiona 66.1 7.2 0.00025 35.6 5.4 87 293-386 133-236 (301)
135 1byk_A Protein (trehalose oper 63.2 16 0.00055 32.2 7.0 70 307-387 138-209 (255)
136 3hcw_A Maltose operon transcri 62.9 6.6 0.00023 35.9 4.4 70 307-386 153-231 (295)
137 3ksm_A ABC-type sugar transpor 62.3 17 0.00058 32.3 7.0 54 326-386 167-224 (276)
138 2rjo_A Twin-arginine transloca 59.1 18 0.00062 33.5 6.8 87 292-387 137-235 (332)
139 3jy6_A Transcriptional regulat 59.0 9.6 0.00033 34.3 4.7 51 330-387 166-221 (276)
140 3ctp_A Periplasmic binding pro 55.6 3.4 0.00012 38.7 1.0 88 292-387 173-271 (330)
141 3o74_A Fructose transport syst 55.2 11 0.00037 33.6 4.3 55 326-387 159-219 (272)
142 2h3h_A Sugar ABC transporter, 54.0 31 0.0011 31.5 7.5 86 292-386 124-219 (313)
143 3m9w_A D-xylose-binding peripl 53.1 26 0.00088 32.0 6.7 87 292-385 124-224 (313)
144 3tb6_A Arabinose metabolism tr 51.7 21 0.00072 32.0 5.7 87 293-386 139-240 (298)
145 2x7x_A Sensor protein; transfe 50.7 38 0.0013 31.2 7.5 87 292-387 129-226 (325)
146 3e61_A Putative transcriptiona 49.3 6.8 0.00023 35.2 2.0 48 329-386 164-216 (277)
147 2cby_A ATP-dependent CLP prote 47.2 26 0.0009 31.1 5.5 53 323-378 31-88 (208)
148 3n6x_A Putative glutathionylsp 46.5 35 0.0012 34.5 6.9 66 46-139 343-411 (474)
149 2hqb_A Transcriptional activat 46.1 89 0.003 28.5 9.3 84 291-384 126-212 (296)
150 1yg6_A ATP-dependent CLP prote 45.6 29 0.001 30.3 5.5 46 330-378 40-87 (193)
151 2fn9_A Ribose ABC transporter, 44.9 39 0.0013 30.2 6.5 54 326-386 171-227 (290)
152 1tjy_A Sugar transport protein 44.9 44 0.0015 30.7 7.0 52 326-385 169-224 (316)
153 3qi7_A Putative transcriptiona 42.9 44 0.0015 32.7 6.7 77 293-378 158-251 (371)
154 3uug_A Multiple sugar-binding 42.1 30 0.001 31.6 5.3 45 326-377 181-229 (330)
155 1b04_A Protein (DNA ligase); D 41.7 37 0.0013 32.5 5.9 36 30-65 232-268 (318)
156 3uq8_A DNA ligase; adenylated 41.3 35 0.0012 32.7 5.6 36 30-65 236-272 (322)
157 3d02_A Putative LACI-type tran 40.5 38 0.0013 30.4 5.7 54 325-385 168-225 (303)
158 3gbv_A Putative LACI-family tr 40.2 29 0.001 31.1 4.8 71 307-386 161-235 (304)
159 1wv2_A Thiazole moeity, thiazo 39.4 13 0.00043 34.9 2.1 68 299-373 167-238 (265)
160 4fe7_A Xylose operon regulator 39.1 40 0.0014 32.4 5.9 88 293-387 141-243 (412)
161 1zau_A DNA ligase; AMP; HET: D 38.5 39 0.0013 32.5 5.4 37 30-66 247-284 (328)
162 3bf0_A Protease 4; bacterial, 36.5 34 0.0012 35.5 5.1 60 326-385 320-381 (593)
163 1ta8_A DNA ligase, NAD-depende 36.1 38 0.0013 32.7 4.9 36 30-65 238-274 (332)
164 4fn4_A Short chain dehydrogena 36.1 1.3E+02 0.0044 27.4 8.5 85 286-378 1-87 (254)
165 2f6i_A ATP-dependent CLP prote 35.2 66 0.0022 28.7 6.2 45 330-378 53-99 (215)
166 3p2l_A ATP-dependent CLP prote 34.8 61 0.0021 28.7 5.8 46 330-378 44-91 (201)
167 2iu4_A DHA-DHAQ, dihydroxyacet 32.4 77 0.0026 30.6 6.4 57 332-388 231-296 (336)
168 3o1i_D Periplasmic protein TOR 32.3 33 0.0011 30.9 3.7 50 326-383 175-227 (304)
169 1y7o_A ATP-dependent CLP prote 31.8 66 0.0022 28.7 5.6 46 330-378 59-106 (218)
170 2c2x_A Methylenetetrahydrofola 31.1 1.1E+02 0.0039 28.6 7.2 35 320-354 65-99 (281)
171 3jsl_A DNA ligase; NAD+-depend 31.0 48 0.0017 31.7 4.7 35 31-65 231-266 (318)
172 3qwd_A ATP-dependent CLP prote 30.9 69 0.0024 28.4 5.5 46 330-378 41-88 (203)
173 3ct4_A PTS-dependent dihydroxy 29.7 82 0.0028 30.3 6.1 58 331-388 235-299 (332)
174 2hz5_A Dynein light chain 2A, 29.7 44 0.0015 26.7 3.6 61 329-389 10-88 (106)
175 2fqx_A Membrane lipoprotein TM 29.0 81 0.0028 29.2 6.0 86 293-386 131-226 (318)
176 1oi2_A Hypothetical protein YC 28.7 93 0.0032 30.3 6.3 41 348-388 289-331 (366)
177 1tg6_A Putative ATP-dependent 26.5 95 0.0032 29.0 5.8 46 330-378 96-143 (277)
178 1oi2_A Hypothetical protein YC 26.5 45 0.0015 32.5 3.6 72 291-378 53-137 (366)
179 3ct4_A PTS-dependent dihydroxy 26.2 47 0.0016 32.0 3.7 72 291-378 45-129 (332)
180 3k1t_A Glutamate--cysteine lig 26.2 50 0.0017 32.7 3.9 99 29-143 213-336 (432)
181 4fs3_A Enoyl-[acyl-carrier-pro 25.6 1.4E+02 0.0047 26.7 6.7 30 289-318 3-35 (256)
182 2iu4_A DHA-DHAQ, dihydroxyacet 25.3 44 0.0015 32.2 3.3 63 291-365 41-116 (336)
183 1b0a_A Protein (fold bifunctio 25.2 1.8E+02 0.0062 27.3 7.5 56 320-377 66-156 (288)
184 1rw1_A Conserved hypothetical 24.5 52 0.0018 25.9 3.2 13 95-107 99-112 (114)
185 3oa2_A WBPB; oxidoreductase, s 23.9 3.3E+02 0.011 25.1 9.3 63 293-355 5-83 (318)
186 3t1i_A Double-strand break rep 23.3 1E+02 0.0035 30.6 5.7 44 329-373 56-101 (431)
187 1aba_A Glutaredoxin; electron 22.9 1.1E+02 0.0036 22.3 4.5 34 33-66 18-56 (87)
188 3lft_A Uncharacterized protein 22.8 1.5E+02 0.0053 26.5 6.5 82 292-386 134-223 (295)
189 1t1v_A SH3BGRL3, SH3 domain-bi 21.9 1.4E+02 0.0046 22.1 5.0 41 33-73 22-64 (93)
190 3o9z_A Lipopolysaccaride biosy 21.8 4.5E+02 0.016 24.1 9.8 63 293-355 5-82 (312)
191 1dgs_A DNA ligase; AMP complex 21.4 88 0.003 33.0 4.9 49 30-78 235-291 (667)
192 2kok_A Arsenate reductase; bru 21.3 65 0.0022 25.6 3.2 15 30-44 42-56 (120)
193 2owo_A DNA ligase; protein-DNA 20.5 86 0.003 33.1 4.7 49 30-78 237-293 (671)
194 3lkb_A Probable branched-chain 20.5 2.5E+02 0.0085 26.0 7.7 65 305-378 32-101 (392)
195 1y81_A Conserved hypothetical 20.4 68 0.0023 26.3 3.2 54 331-392 80-137 (138)
196 2kkp_A Phage integrase; SAM-li 20.2 1.5E+02 0.005 22.1 5.0 46 190-237 53-101 (117)
197 3tig_A TTL protein; ATP-grAsp, 20.1 83 0.0028 30.8 4.2 29 70-109 148-177 (380)
No 1
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=1e-89 Score=693.86 Aligned_cols=356 Identities=49% Similarity=0.792 Sum_probs=342.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCC-cEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~-PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
|+|+||++|++|++||||+|++.+++|++|+.++++++| + |+|||||+++|||||++|+++.+|||+++ |++|++
T Consensus 1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~lg---~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~ 77 (395)
T 2fp4_B 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLN---AKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVG 77 (395)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHT---CSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHH
T ss_pred CCCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHcC---CCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHH
Confidence 889999999999999999999999999999999999998 8 89999999999999999988666999999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecC
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~ 185 (394)
+++++++++.++++|+++.|.++++|+||||+++++|+|+++.+||.+++|++++|.+||++||+++.++||+++++|++
T Consensus 78 ~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~id 157 (395)
T 2fp4_B 78 QLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQID 157 (395)
T ss_dssp HHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECC
T ss_pred HHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecC
Confidence 99999999988888988889888999999999999999999999999988999999999999999998999999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhh
Q 016159 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF 265 (394)
Q Consensus 186 p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~ 265 (394)
|..++++++|++|++.+|+++.+.+++++++.+||++|.++|++++|||||+++++|+++|+|||+.+||||.|||++++
T Consensus 158 p~~~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~~~ 237 (395)
T 2fp4_B 158 IIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF 237 (395)
T ss_dssp TTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHH
T ss_pred CCCCCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCC
Q 016159 266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK 345 (394)
Q Consensus 266 ~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~ 345 (394)
+|++.+++++.|.+|++++|+|++++||||||+||||++|+|||+|+.+||+||||+|+||+|+.++++++++++++||+
T Consensus 238 ~~~d~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~Gg~paNflDvgG~a~~e~~~~al~~il~d~~ 317 (395)
T 2fp4_B 238 AMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPK 317 (395)
T ss_dssp TTCCCTTSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSCCHHHHHHHHHHHHHCTT
T ss_pred hhcCCCccChhhhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHcCCCcCCcEEECCCCCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159 346 VKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY 386 (394)
Q Consensus 346 v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~ 386 (394)
||+|||||||||++||+||+||++|+++++.++ +.+.-||.
T Consensus 318 v~~ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~n 360 (395)
T 2fp4_B 318 VEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTN 360 (395)
T ss_dssp CCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETT
T ss_pred CCEEEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCCC
Confidence 999999999999999999999999999976554 77777764
No 2
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=6.3e-87 Score=672.65 Aligned_cols=349 Identities=44% Similarity=0.707 Sum_probs=336.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCc-EEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~P-vVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
|+|+||++|++|++||||+|++.+++|++|+.++++++| +| +||||+.+.|||||+ |||+++ |++|++
T Consensus 1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG---~P~vVvK~~~~~ggrg~~-------gGV~l~~s~eel~ 70 (388)
T 2nu8_B 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIG---AGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIR 70 (388)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC---SSCEEEEECCSSSCTTTT-------TCEEEECSHHHHH
T ss_pred CCCCHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHhC---CCeEEEEEecCCCCCCcc-------CCEEEECCHHHHH
Confidence 899999999999999999999999999999999999998 99 999999988999985 999999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecC
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~ 185 (394)
+++++++++.++|+|+++.|..+++++||||+++++|+|+++.+|+.+++|++++|.+||++||.+++++||++.+++++
T Consensus 71 ~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~ 150 (388)
T 2nu8_B 71 AFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALD 150 (388)
T ss_dssp HHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECB
T ss_pred HHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecC
Confidence 99999999887888988888888999999999989999999999999977999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhh
Q 016159 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF 265 (394)
Q Consensus 186 p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~ 265 (394)
|..+++++++++|++.+|+++.+++++++++.+||++|.++|++++|||||+++++|+++|+|||+.+||||.|||+++.
T Consensus 151 P~~gl~~~~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~~~ 230 (388)
T 2nu8_B 151 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLR 230 (388)
T ss_dssp TTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCC
Q 016159 266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK 345 (394)
Q Consensus 266 ~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~ 345 (394)
++++++++++.|.+|++++|+|++++||||||+||||++|+|||+|+.+||+||||+|+||+|+.++++++++++++||+
T Consensus 231 ~~~~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~Gg~~aNflD~gG~a~~~~~~~~~~~il~d~~ 310 (388)
T 2nu8_B 231 EMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDK 310 (388)
T ss_dssp HHCCGGGSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCCCHHHHHHHHHHHHTSTT
T ss_pred hhcCccccChhHHHHHHhcCCccCCCCEEEEEeCCCchhhhhhHHHHHcCCCcCceeEecCCCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159 346 VKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY 386 (394)
Q Consensus 346 v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~ 386 (394)
||+|||||||||++||.||+||++|+++++.++ +.++.||.
T Consensus 311 v~~ilvni~ggi~~~~~vA~gii~a~~~~~~~~pivvrl~G~n 353 (388)
T 2nu8_B 311 VKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNN 353 (388)
T ss_dssp CCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTT
T ss_pred CCEEEEEecCCcCCchHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 999999999999999999999999999965554 77999974
No 3
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=1e-83 Score=650.71 Aligned_cols=340 Identities=36% Similarity=0.606 Sum_probs=325.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
|+|+||++|++|++||||||++.+++|++|+.++++++| +|||||+|++.+||||+ |||+++ |++|+++
T Consensus 1 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG---~PvVvKa~~~~ggkg~~-------GGV~l~~s~ee~~~ 70 (397)
T 3ufx_B 1 MNLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFG---KRVVIKAQVHVGGRGKA-------GGVKLADTPQEAYE 70 (397)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHT---SCEEEEECCSSSCTTTT-------TCEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcC---CCEEEEEccccCCCCcc-------ceEEEeCCHHHHHH
Confidence 899999999999999999999999999999999999998 99999999988999885 999999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p 186 (394)
++++++++.+ .|..+++++||||+++++|+|+++.+||.|++|+|++|.+||++||++++++||++++++++|
T Consensus 71 a~~~~~~~~~-------~g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~ 143 (397)
T 3ufx_B 71 KAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDP 143 (397)
T ss_dssp HHHHHTTCEE-------TTEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBT
T ss_pred HHHHhhhhhc-------cCCccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCC
Confidence 9999998753 466778999999999999999999999999889999998999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhhc
Q 016159 187 FNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266 (394)
Q Consensus 187 ~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~~ 266 (394)
..++++++|++|++++|+++. ++++++++.+||++|.++|++++|||||+++++|+++|+|||+.+||||.|||+++..
T Consensus 144 ~~~l~~~~a~~~~~~lG~~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~~~~ 222 (397)
T 3ufx_B 144 HKGFRPFEAREMVKRAGLEGN-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAE 222 (397)
T ss_dssp TTBCCHHHHHHHHHHHTCCSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHHHHT
T ss_pred CCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchhhhh
Confidence 999999999999999999988 9999999999999999999999999999999998899999999999999999999999
Q ss_pred cCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCc
Q 016159 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKV 346 (394)
Q Consensus 267 ~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v 346 (394)
+++++++++.|.+|++++|+|++++||||||+||||++|+|||+|..+||+||||+|+||+|+++++++|++++++||+|
T Consensus 223 ~~~~~~~~~~e~~a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~G~~~aN~lD~gG~a~~e~~~~al~~~l~d~~v 302 (397)
T 3ufx_B 223 LREVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAKADVVYNALKVVLKDPDV 302 (397)
T ss_dssp THHHHCSSHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSCCCHHHHHHHHHHHHTCTTC
T ss_pred hcCcccCCHhHHHHHHcCCCcccCCCcEEEEecCccHHHHHHHHHHHcCCCcCCcEecCCCCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecc
Q 016159 347 KAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSN 385 (394)
Q Consensus 347 ~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~ 385 (394)
|+|||||||||++||+||++|++|+++.+.++ +.++-||
T Consensus 303 ~~ilv~i~ggi~~~~~vA~~i~~a~~~~~~~kPvvv~~~G~ 343 (397)
T 3ufx_B 303 KGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGT 343 (397)
T ss_dssp CEEEEEEEEEEEESHHHHHHHHHHHTTTCCCSCEEEEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhhCCCCcEEEEccCC
Confidence 99999999999999999999999999985444 7677775
No 4
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=5.1e-80 Score=626.22 Aligned_cols=338 Identities=23% Similarity=0.268 Sum_probs=296.0
Q ss_pred cCCCHHHHHHHHHHcCC---C---CCCceeeCCH---HHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159 28 LNIHEYQGAELMAKYGI---N---VPKGLAVASV---DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GI---p---vp~~~~~~s~---eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l 98 (394)
..|+|||+|+||++||+ | .+++.+++++ +||.++++++| ++|||||+|+++|||||+ |||++
T Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg--~~pvVvKaqv~~ggRgk~-------GGV~l 74 (425)
T 3mwd_A 4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLL--SQNLVVKPDQLIKRRGKL-------GLVGV 74 (425)
T ss_dssp EEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGG--TSCEEEEECSSCSCTTTT-------TCCEE
T ss_pred hhHhHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhC--CCCEEEEeccccCCCCcC-------CeEEE
Confidence 45899999999999999 4 2347777655 89999999995 379999999999999995 99999
Q ss_pred C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC--CeeEEEEEEEeccCCceeeeeccCCCcceeeccccC
Q 016159 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY 175 (394)
Q Consensus 99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~--~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~ 175 (394)
+ |++|+++++++|+++.+ +++.++..+++|+||+|+++ ++|+|+|+++||. +|+|++|.+||++||++++++
T Consensus 75 ~~s~eev~~aa~~ml~~~~---~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~--gpvI~~s~~GGv~IE~vad~~ 149 (425)
T 3mwd_A 75 NLTLDGVKSWLKPRLGQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAKA 149 (425)
T ss_dssp EECHHHHHHHHTTTTTCEE---EETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCSHHHHS
T ss_pred ECCHHHHHHHHHHHHhhhh---hccCCCceEEEEEEEecccCCCCceEEEEEEecCC--CCEEEEECCCCccHhHhhccc
Confidence 9 99999999999998875 23234556789999999975 5999999999999 599999999999999998765
Q ss_pred CCeEEEEecCCCCCCCHHHHH-HHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecC
Q 016159 176 PNMIVKVPIDVFNGITDEDAA-KVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFD 254 (394)
Q Consensus 176 pd~i~~~~v~p~~gl~~~~a~-~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ld 254 (394)
.+++++|..+++.++++ +++. |+++.+++++++++.+||++|.++|++++|||||+++++| ++|+|||+.+|
T Consensus 150 ----~~~~i~~~~~l~~~~~~~~ll~--g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~g-v~AlDAki~lD 222 (425)
T 3mwd_A 150 ----QKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVD 222 (425)
T ss_dssp ----EEEEEETTCCCCHHHHHHTTTT--TSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEEEEE
T ss_pred ----ceEecCCccccCHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCc-eEEEeceeecc
Confidence 46778887788888774 3433 5788899999999999999999999999999999999987 99999999999
Q ss_pred cchhccchhhhc-cCCC----CCCCHHhHhhh--------cCCCeEEccCCceeEEecChhHHHHHHHHHHHcCC--Ccc
Q 016159 255 DNAAFRQKEIFA-LRDP----TQEDPREVAAA--------KADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGG--TPA 319 (394)
Q Consensus 255 d~a~fR~~~~~~-~~~~----~~~~~~e~~a~--------~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg--~~a 319 (394)
|||.|||++.+. ++++ .++++.|.++. +++|+|++|+||||||+|||||+|+|||+|+++|| +||
T Consensus 223 DnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~Gg~~~pA 302 (425)
T 3mwd_A 223 ATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELA 302 (425)
T ss_dssp GGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCGGGBC
T ss_pred cchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHcCCCcCCc
Confidence 999999987654 3444 45688876553 57899999999999999999999999999999999 799
Q ss_pred ceeecCCCCCHHHHHHH----HHHHhcCCCccEEEEEccCCCCChHHHH---HHHHHHHHHc-----CCcc--eEEeecc
Q 016159 320 NFLDVGGNASEGQVVEA----FKILTSDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQV-----SALD--CFGFHSN 385 (394)
Q Consensus 320 NflD~gG~a~~~~~~~a----~~~~l~~~~v~~i~vni~ggi~~~d~vA---~gii~a~~~~-----~~~~--~~~~~~~ 385 (394)
||||+||+|+.++++++ |+++++||+||+|||||||||++||+|| +|||+|++++ +.++ +.+..||
T Consensus 303 NflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gt 382 (425)
T 3mwd_A 303 NYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGP 382 (425)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBST
T ss_pred ceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcC
Confidence 99999999999999985 9999999999999999999999999999 9999999986 3444 8888887
Q ss_pred e
Q 016159 386 Y 386 (394)
Q Consensus 386 ~ 386 (394)
-
T Consensus 383 n 383 (425)
T 3mwd_A 383 N 383 (425)
T ss_dssp T
T ss_pred C
Confidence 3
No 5
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.5e-77 Score=641.11 Aligned_cols=337 Identities=23% Similarity=0.265 Sum_probs=298.5
Q ss_pred cCCCHHHHHHHHHHcCCC------CCCceeeCCH---HHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159 28 LNIHEYQGAELMAKYGIN------VPKGLAVASV---DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIp------vp~~~~~~s~---eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l 98 (394)
..|+|||+|+||++|++| .+++.+++++ +||.++++++| .+|||||+|+++|||||+ |||++
T Consensus 4 k~i~Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg--~~pvVvKaQv~~GgRGKa-------GGVkL 74 (829)
T 3pff_A 4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLL--SQNLVVKPDQLIKRRGKL-------GLVGV 74 (829)
T ss_dssp EEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHH--HSCEEEEECSSCSCTTTT-------TCCEE
T ss_pred hhHhHHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhC--CCCEEEEecccccCCCcC-------CeEEE
Confidence 458999999999999999 5678788765 88888888884 379999999999999996 99999
Q ss_pred C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC--CeeEEEEEEEeccCCceeeeeccCCCcceeeccccC
Q 016159 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY 175 (394)
Q Consensus 99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~--~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~ 175 (394)
+ |++|+++++++|+++.+. ++.++..+++|+||+|+++ ++|+|+|+++||. +|+|++|.+|||+||+++++.
T Consensus 75 ~~s~eEa~~aa~~iLg~~~~---~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~--gpvIm~s~eGGvdIE~vad~~ 149 (829)
T 3pff_A 75 NLTLDGVKSWLKPRLGQEAT---VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAKA 149 (829)
T ss_dssp EECHHHHHHHHTTTTTCEEE---ETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCCHHHHS
T ss_pred ECCHHHHHHHHHHHHHHHHh---hcCCCceEEEEEEEecccCCCccEEEEEEEecCC--CCEEEEECCCCcchhhhhhhc
Confidence 9 999999999999998752 2234556899999999975 5999999999999 599999999999999998653
Q ss_pred CCeEEEEecCCCCCCCHHHH-HHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecC
Q 016159 176 PNMIVKVPIDVFNGITDEDA-AKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFD 254 (394)
Q Consensus 176 pd~i~~~~v~p~~gl~~~~a-~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ld 254 (394)
++++++|..+++.+++ ++++. |+++.++++++++|.+||++|.++|++++|||||+++++| ++|+|||+.+|
T Consensus 150 ----~~~~I~p~~gl~~~~a~~~ll~--g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dg-v~ALDAKi~lD 222 (829)
T 3pff_A 150 ----QKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVD 222 (829)
T ss_dssp ----EEEEEETTCCCCHHHHHHTTTT--TSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCCEEEEE
T ss_pred ----eEEecCCccccCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCc-eEEEeceeeec
Confidence 6788999999999998 44443 5788999999999999999999999999999999999988 99999999999
Q ss_pred cchhccchhhhcc-CCC----CCCCHHhHhhh--------cCCCeEEccCCceeEEecChhHHHHHHHHHHHcCC--Ccc
Q 016159 255 DNAAFRQKEIFAL-RDP----TQEDPREVAAA--------KADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGG--TPA 319 (394)
Q Consensus 255 d~a~fR~~~~~~~-~~~----~~~~~~e~~a~--------~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg--~~a 319 (394)
|||.|||++.+.. +++ .++++.|.++. +++|+|++|+||||||+|||||+|+|||+|+++|| +||
T Consensus 223 DnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~Gg~~~pA 302 (829)
T 3pff_A 223 ATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELA 302 (829)
T ss_dssp GGGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCTTTBC
T ss_pred cchhhhCchhhhhhhccccccccCChhhhhhhhhhhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHHcCCCCCCc
Confidence 9999999876543 443 46688876543 47899999999999999999999999999999999 799
Q ss_pred ceeecCCCCCHHHHHHH----HHHHhcCCCccEEEEEccCCCCChHHHH---HHHHHHHHHc-----CCcc--eEEeecc
Q 016159 320 NFLDVGGNASEGQVVEA----FKILTSDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQV-----SALD--CFGFHSN 385 (394)
Q Consensus 320 NflD~gG~a~~~~~~~a----~~~~l~~~~v~~i~vni~ggi~~~d~vA---~gii~a~~~~-----~~~~--~~~~~~~ 385 (394)
||||+||+|+.++++++ |+++++||+||+|||||||||+|||+|| +|||+|++++ ++++ +.+..||
T Consensus 303 NFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~Gt 382 (829)
T 3pff_A 303 NYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGP 382 (829)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBST
T ss_pred eeEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCC
Confidence 99999999999999987 9999999999999999999999999999 9999999996 3444 7788887
No 6
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.3e-36 Score=280.98 Aligned_cols=209 Identities=18% Similarity=0.233 Sum_probs=180.8
Q ss_pred hhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeee-cCCCCCCcccCCCcccEEE-C-C
Q 016159 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQIL-AGGRGLGTFKSGLKGGVHI-V-K 100 (394)
Q Consensus 24 ~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~-~ggRgK~~~~~~~~GGV~l-~-s 100 (394)
+.+++.++|+++|++|++||||+|++.++++++|+.++++++| ||+||||+.. .+|||++ |||.+ . |
T Consensus 14 ~~~~~~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~lg---~PvvvKp~~~~~~~r~~~-------gGv~~~v~~ 83 (238)
T 1wr2_A 14 KQGRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIG---YPVVLKLMSPQILHKSDA-------KVVMLNIKN 83 (238)
T ss_dssp HTTCCEECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHHC---SSEEEEEECTTCCCHHHH-------TCEEEEECS
T ss_pred hcCcCCCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHhC---CCEEEEEccCCCCcCCcc-------CCEEEeCCC
Confidence 3467899999999999999999999999999999999999998 9999999987 6777764 89999 5 9
Q ss_pred HHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEE
Q 016159 101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180 (394)
Q Consensus 101 ~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~ 180 (394)
++|+.++++++++....+ ..+..+.+++||||+++++|+++++..|+.+ +|++++| .||+++|.+.+ .
T Consensus 84 ~~el~~a~~~~~~~~~~~----~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~-g~v~~~~-~Gg~~iE~~~d----~-- 151 (238)
T 1wr2_A 84 EEELKKKWEEIHENAKKY----RPDAEILGVLVAPMLKPGREVIIGVTEDPQF-GHAIMFG-LGGIFVEILKD----V-- 151 (238)
T ss_dssp HHHHHHHHHHHHHHHHHH----CTTCCCCEEEEEECCCCCEEEEEEEEEETTT-EEEEEEE-ECSTTHHHHCC----C--
T ss_pred HHHHHHHHHHHHHhhhhh----CCCCccceEEEEECCCCCeEEEEEEEeCCCC-CcEEEEe-cCCceeeeecc----e--
Confidence 999999999998764321 2344567999999999899999999999986 5999999 89999998754 2
Q ss_pred EEecCCCCCCCHHHHHHHHHhC-------CCCc---ccHHHHHHHHHHHHHHhhcCC--cceeeecceeeccCC-cEEEe
Q 016159 181 KVPIDVFNGITDEDAAKVVDGL-------APKV---ADRNDAIEQVKKLYKLFCESD--CTLLEINPLAETSGK-QLVAA 247 (394)
Q Consensus 181 ~~~v~p~~gl~~~~a~~l~~~l-------g~~~---~~~~~l~~~l~~L~~l~~e~d--~~~lEINPLvv~~~G-~~~al 247 (394)
.+.++| ++++++++|.+.+ |+++ .|++++++++.+||++|.+.+ +.++|||||+++++| +++|+
T Consensus 152 ~~~~~P---l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~al 228 (238)
T 1wr2_A 152 TFRLVP---ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIV 228 (238)
T ss_dssp EEEESS---CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEEC
T ss_pred eeecCC---CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEE
Confidence 244567 7999999998887 6654 799999999999999999986 899999999999986 69999
Q ss_pred eceeecCcch
Q 016159 248 DAKLNFDDNA 257 (394)
Q Consensus 248 Daki~ldd~a 257 (394)
||++.+|||.
T Consensus 229 Da~~~~~~~~ 238 (238)
T 1wr2_A 229 DSRIILKPKD 238 (238)
T ss_dssp CEEEEECCC-
T ss_pred EEEEEeCCCC
Confidence 9999999973
No 7
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.68 E-value=8.8e-17 Score=164.93 Aligned_cols=202 Identities=17% Similarity=0.193 Sum_probs=137.0
Q ss_pred ceeeeeccCCCcceeeccc--cCCCe-EEEEecCCCCCCCHHHHHHHHHhCC--------CCc-ccHHHHHHHHHHHHHH
Q 016159 155 GPIIIGCSKGGTSIEDLAE--KYPNM-IVKVPIDVFNGITDEDAAKVVDGLA--------PKV-ADRNDAIEQVKKLYKL 222 (394)
Q Consensus 155 ~Pvi~~s~~GGv~iE~~~~--~~pd~-i~~~~v~p~~gl~~~~a~~l~~~lg--------~~~-~~~~~l~~~l~~L~~l 222 (394)
|++=++|..|.+-.|.+.. +.--- ..-+.+--..+++..+..+.+..=. +.. .+-..+.+.+.++.
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~d~l~~~~~D~~t~~I~l~~E~i~~~~~f~~~a~~~~-- 227 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVT-- 227 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEEESCCSCHHHHHHHHHHHH--
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCCCHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHHHHHhc--
Confidence 5899999778776665421 11000 0112232223456655555543210 111 23455555555542
Q ss_pred hhcCCcceeeecceeeccCCcEEEeece--------eecCc---chhccchhhhccCCCCCCCHHhHhhhcCCCeEEcc-
Q 016159 223 FCESDCTLLEINPLAETSGKQLVAADAK--------LNFDD---NAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGL- 290 (394)
Q Consensus 223 ~~e~d~~~lEINPLvv~~~G~~~alDak--------i~ldd---~a~fR~~~~~~~~~~~~~~~~e~~a~~~~l~y~~l- 290 (394)
. -.|+++..-|+--. -.+ +.=++ ++.|||+++.++++ +.|..+....+.| ++
T Consensus 228 -~--------~KPVv~~k~G~~~~-g~~aa~~Htgalag~~~~~~AafRqaGv~~v~~-----~~El~~~~~~l~~-~~~ 291 (457)
T 2csu_A 228 -K--------KKPIIALKAGKSES-GARAASSHTGSLAGSWKIYEAAFKQSGVLVANT-----IDEMLSMARAFSQ-PLP 291 (457)
T ss_dssp -H--------HSCEEEEECC-------------------CHHHHHHHHHHTTCEEESS-----HHHHHHHHTTTTS-CCC
T ss_pred -C--------CCCEEEEEcCCCcc-ccchhhcccCccCCcHHHHHHHHHhCCCeEECC-----HHHHHHHHHHhcC-CCC
Confidence 2 24888766553211 111 11122 57899999877664 4666666667778 66
Q ss_pred -CCceeEEecChhHHHHHHHHHHHcCCC---------------------ccceeecCCCCCHHHHHHHHHHHhcCCCccE
Q 016159 291 -DGEIGCMVNGAGLAMATMDIIKLHGGT---------------------PANFLDVGGNASEGQVVEAFKILTSDEKVKA 348 (394)
Q Consensus 291 -~G~Ig~~~nGaGl~m~t~D~i~~~gg~---------------------~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~ 348 (394)
.++|+||+||||++|+++|++..+|++ ++||+|++|+++++++.++++++++||++++
T Consensus 292 ~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~dp~vd~ 371 (457)
T 2csu_A 292 RGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDM 371 (457)
T ss_dssp SSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhcCCCCCE
Confidence 579999999999999999999999998 7899999999999999999999999999999
Q ss_pred EEEEc----cCCCCChHHHHHHHHHHHHHcC
Q 016159 349 ILVNI----FGGIMKCDVIASGIVNAAKQVS 375 (394)
Q Consensus 349 i~vni----~ggi~~~d~vA~gii~a~~~~~ 375 (394)
||||+ +||++ |+.+|+++++++++..
T Consensus 372 vlv~~~~~~~Gg~~-~~~~a~~i~~al~~~~ 401 (457)
T 2csu_A 372 LIAICVVPTFAGMT-LTEHAEGIIRAVKEVN 401 (457)
T ss_dssp EEEEEECCCSTTCC-SSHHHHHHHHHHHHHC
T ss_pred EEEEccccccccCC-chhHHHHHHHHHHHhc
Confidence 99988 66676 9999999999999954
No 8
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.27 E-value=6.3e-11 Score=120.72 Aligned_cols=104 Identities=28% Similarity=0.259 Sum_probs=87.0
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
+..-+++.+|++|+++|||+|++..+++.+|+.+++++++ +|+||||....+ || ||.++ |++|+.
T Consensus 119 ~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~~~g---~PvVvKp~~~~g--g~---------GV~iv~~~eel~ 184 (442)
T 3lp8_A 119 RLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHK---LPLVVKADGLAQ--GK---------GTVICHTHEEAY 184 (442)
T ss_dssp HHHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHSC---SSEEEEESSCCT--TT---------SEEEESSHHHHH
T ss_pred HHhhCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHcC---CcEEEeECCCCC--CC---------eEEEeCCHHHHH
Confidence 3446889999999999999999999999999999999998 999999986544 34 68888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++++.... .|..-..++||||++ +.|+.+.+..|..
T Consensus 185 ~a~~~~~~~~~-------~g~~~~~vlvEe~i~-G~E~sv~~~~dg~ 223 (442)
T 3lp8_A 185 NAVDAMLVHHK-------FGEAGCAIIIEEFLE-GKEISFFTLVDGS 223 (442)
T ss_dssp HHHHHHHTSCT-------TGGGGSSEEEEECCC-SEEEEEEEEEESS
T ss_pred HHHHHHHhhcc-------cCCCCCeEEEEEeec-CcEEEEEEEECCC
Confidence 99999874321 222235799999999 8999999998865
No 9
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.24 E-value=3.5e-11 Score=118.99 Aligned_cols=104 Identities=12% Similarity=0.124 Sum_probs=84.0
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeec-CCCCCCcccCCCcccEEEC-CHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILA-GGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~-ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
+..-+++.+|++|+++|||+|++..+++++|+.++++++| +|+|+||.... + |+ ||.++ |++|+
T Consensus 92 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~~~~~--g~---------Gv~~v~~~~el 157 (369)
T 3aw8_A 92 EVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRVG---LPALLKTRRGGYD--GK---------GQALVRTEEEA 157 (369)
T ss_dssp HHHTCHHHHHHHHHHHTCCCCCEEEESSHHHHHHHHTTTC---SSEEEEECCC-----------------EEEECSHHHH
T ss_pred HHhcCHHHHHHHHHHCCCCCCCceeeCCHHHHHHHHHHcC---CCEEEEEcCCCCC--cc---------eEEEECCHHHH
Confidence 3457899999999999999999999999999999999998 99999997643 3 44 69899 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
.++++++. -..++||||++.+.|+.+.+..|+.. .++.++
T Consensus 158 ~~~~~~~~---------------~~~~lvEe~i~~g~e~sv~~~~d~~G--~~~~~~ 197 (369)
T 3aw8_A 158 LEALKALG---------------GRGLILEGFVPFDREVSLLAVRGRTG--EVAFYP 197 (369)
T ss_dssp HHHHTTTC---------------SSSEEEEECCCCSEEEEEEEEECTTS--CEEECC
T ss_pred HHHHHhcC---------------CCcEEEEEcCCCCEEEEEEEEECCCC--CEEEEC
Confidence 88876641 14799999999889999999999753 444444
No 10
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.22 E-value=1.1e-10 Score=113.12 Aligned_cols=105 Identities=15% Similarity=0.094 Sum_probs=82.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHH----HHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAI----QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a----~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e 102 (394)
...+++..|++|+++|||+|++.++.+.+++.+++ +++| +|+||||.... .|+ ||.++ |++
T Consensus 104 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g---~PvvvKP~~~~--~s~---------Gv~~v~~~~ 169 (317)
T 4eg0_A 104 LGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVAKLG---LPLFVKPASEG--SSV---------AVLKVKTAD 169 (317)
T ss_dssp HHHCHHHHHHHHHHTTCCCCCEEEEETTSCHHHHHHHHHHHHC---SCEEEEECC----------------CCEEECSGG
T ss_pred HHhCHHHHHHHHHHCCcCCCCEEEEECchhHHHHHHHHHHhcC---CCEEEEeCCCC--CCC---------CEEEECCHH
Confidence 34689999999999999999999999988887777 7888 99999997533 233 57788 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
++.+++++.... -..++||||++.++|+.+++..|+.. |++...
T Consensus 170 el~~a~~~~~~~-------------~~~~lvEe~i~~G~E~~v~vl~~~~~--~~~~i~ 213 (317)
T 4eg0_A 170 ALPAALSEAATH-------------DKIVIVEKSIEGGGEYTACIAGDLDL--PLIKIV 213 (317)
T ss_dssp GHHHHHHHHTTT-------------CSEEEEEECCCSSEEEEEEEETTCCC--CCEEEE
T ss_pred HHHHHHHHHHhC-------------CCeEEEEcCCCCCcEEEEEEECCccc--ceEEEe
Confidence 999998876422 15899999998789999999988644 555554
No 11
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.22 E-value=1.5e-10 Score=115.98 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=84.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHH----HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVD----EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~e----ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e 102 (394)
...+++.+|++|+++|||+|++.++.+.+ ++.++++++| +|+||||... +.++ ||.++ |++
T Consensus 156 ~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg---~PvvVKP~~g--gss~---------Gv~~v~~~~ 221 (386)
T 3e5n_A 156 VAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLG---LPLFVKPANQ--GSSV---------GVSQVRTAD 221 (386)
T ss_dssp HHHBHHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHHHHHHHC---SSEEEEESBS--CSST---------TCEEECSGG
T ss_pred HHhCHHHHHHHHHHCCCCCCCEEEEeCcccchhhHHHHHHhcC---CCEEEEECCC--CcCC---------CEEEECCHH
Confidence 33578999999999999999999999888 7888889998 9999999753 3344 68888 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeee
Q 016159 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (394)
Q Consensus 103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~ 160 (394)
|+.+++++++.. + ..++|||+++ ++|+.+++..|+. .+++..
T Consensus 222 el~~a~~~a~~~----------~---~~vlVEe~I~-G~E~~v~vl~~~~--~~~~~~ 263 (386)
T 3e5n_A 222 AFAAALALALAY----------D---HKVLVEAAVA-GREIECAVLGNAV--PHASVC 263 (386)
T ss_dssp GHHHHHHHHTTT----------C---SEEEEEECCC-SEEEEEEEECSSS--CEEEEE
T ss_pred HHHHHHHHHHhC----------C---CcEEEEcCCC-CeEEEEEEEeCCC--ceEEEe
Confidence 999998887532 1 4799999999 6999999998865 245443
No 12
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.21 E-value=2.3e-10 Score=120.59 Aligned_cols=105 Identities=18% Similarity=0.186 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHcCCCCCCcee-----------------------------eCCHHHHHHHHHHhCCCCCcEEEEEeeec
Q 016159 30 IHEYQGAELMAKYGINVPKGLA-----------------------------VASVDEVKKAIQDAFPDHKELVVKSQILA 80 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~-----------------------------~~s~eea~~~a~~lg~~~~PvVvK~q~~~ 80 (394)
-++..+|++|+++|||+|++.. +.+.+|+.++++++| ||+||||..
T Consensus 179 ~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iG---yPvVVKp~~-- 253 (587)
T 3jrx_A 179 GDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIG---FPLMIKASE-- 253 (587)
T ss_dssp CSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHC---SSEEEEETT--
T ss_pred CCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcC---CeEEEEeCC--
Confidence 5889999999999999999987 889999999999998 999999965
Q ss_pred CCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeee
Q 016159 81 GGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIII 159 (394)
Q Consensus 81 ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~ 159 (394)
|+-|| ||+++ |++|+.++++++.... .+ ..++||+|++..+|+.+.+..|... .++.
T Consensus 254 GgGGk---------Gv~iV~s~eEL~~a~~~a~~~~--------~~---~~vlVEeyI~g~rei~V~vl~D~~G--~vv~ 311 (587)
T 3jrx_A 254 GGGGK---------GIRKAESAEDFPILFRQVQSEI--------PG---SPIFLMKLAQHARHLEVQILADQYG--NAVS 311 (587)
T ss_dssp CCSSS---------SEEEECSTTTHHHHHHHHHHHS--------TT---CCEEEEECCCSCEEEEEEEEECSSS--CEEE
T ss_pred CCCCC---------CeEEeCCHHHHHHHHHHHHhhc--------cC---CCEEEEEecCCCcEEEEEEEEcCCC--CEEE
Confidence 33355 69999 9999999998876432 11 4799999999779999999999753 5555
Q ss_pred ec
Q 016159 160 GC 161 (394)
Q Consensus 160 ~s 161 (394)
++
T Consensus 312 l~ 313 (587)
T 3jrx_A 312 LF 313 (587)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 13
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.20 E-value=8.5e-11 Score=118.30 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=82.8
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeC--CHHHHHHHHHHhCCCCCcEEEEEeeecCC-CCCCcccCCCcccEEEC-CHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVA--SVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKE 102 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~--s~eea~~~a~~lg~~~~PvVvK~q~~~gg-RgK~~~~~~~~GGV~l~-s~e 102 (394)
+...+++..|++|+++|||+|++..+. +.+++.++++++| +|+||||.. ++ .|| ||.++ |++
T Consensus 119 ~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g---~P~VvKp~~--gg~~g~---------Gv~~v~~~~ 184 (403)
T 3k5i_A 119 RTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLG---YPLMLKSKT--MAYDGR---------GNFRVNSQD 184 (403)
T ss_dssp HHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHHC---SSEEEEESS--SCCTTT---------TEEEECSTT
T ss_pred HHhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHHhC---CCEEEEeCC--CCcCCC---------CEEEECCHH
Confidence 445789999999999999999999999 9999999999998 999999964 32 355 68888 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
|+.++++.+. + ..++||||++.+.|+.+.+.+|+.
T Consensus 185 el~~a~~~~~------------~---~~~lvEe~i~~~~E~sv~v~~~~~ 219 (403)
T 3k5i_A 185 DIPEALEALK------------D---RPLYAEKWAYFKMELAVIVVKTKD 219 (403)
T ss_dssp SHHHHHHHTT------------T---SCEEEEECCCEEEEEEEEEEECSS
T ss_pred HHHHHHHhcC------------C---CcEEEecCCCCCeEEEEEEEEcCC
Confidence 9998887641 1 479999999978999999999864
No 14
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.19 E-value=2.1e-10 Score=119.91 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=84.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCcee-----------------------------eCCHHHHHHHHHHhCCCCCcEEEEEee
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLA-----------------------------VASVDEVKKAIQDAFPDHKELVVKSQI 78 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~-----------------------------~~s~eea~~~a~~lg~~~~PvVvK~q~ 78 (394)
..-++..+|++|+++|||+|++.. +.+.+|+.++++++| ||+||||..
T Consensus 161 ~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~ig---yPvVVKp~~ 237 (540)
T 3glk_A 161 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIG---FPLMIKASE 237 (540)
T ss_dssp ---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHC---SSEEEEETT
T ss_pred HhCCHHHHHHHHHHcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcC---CcEEEEECC
Confidence 345899999999999999999987 889999999999998 999999965
Q ss_pred ecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCcee
Q 016159 79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPI 157 (394)
Q Consensus 79 ~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pv 157 (394)
|+-|+ ||+++ |++|+.++++++.... .+ ..++||||++..+|+.+.+..|+. + .+
T Consensus 238 --ggGG~---------Gv~iv~~~~eL~~a~~~~~~~~--------~~---~~vlVEe~I~g~rei~V~vl~d~~-G-~v 293 (540)
T 3glk_A 238 --GGGGK---------GIRKAESAEDFPILFRQVQSEI--------PG---SPIFLMKLAQHARHLEVQILADQY-G-NA 293 (540)
T ss_dssp --CC-------------EEEECSTTTHHHHHHHHHHHS--------TT---CCEEEEECCSSEEEEEEEEEECTT-S-CE
T ss_pred --CCCCC---------CEEEECCHHHHHHHHHHHHhhc--------cC---CCEEEEEecCCCcEEEEEEEEcCC-C-CE
Confidence 33344 69999 9999999998876432 11 479999999966999999999975 3 56
Q ss_pred eeec
Q 016159 158 IIGC 161 (394)
Q Consensus 158 i~~s 161 (394)
+.++
T Consensus 294 v~l~ 297 (540)
T 3glk_A 294 VSLF 297 (540)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 15
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.8e-12 Score=104.38 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
.+++.+|++|+++|||+|++. .+.+++++.++++++| +|+|+||.. ++.|+ ||.++ |++++.+
T Consensus 7 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~---~P~vvKp~~--~~~~~---------gv~~v~~~~el~~ 72 (108)
T 2cqy_A 7 GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIG---YPVMIKASA--GGGGK---------GMRIAWDDEETRD 72 (108)
T ss_dssp CCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHC---SSEEEEETT--SCCTT---------TCEEESSHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcC---CCEEEEECC--CCCCc---------cEEEeCCHHHHHH
Confidence 456677889999999999998 8899999999999998 999999975 33344 68888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEE
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi 147 (394)
++++++..... + .+ -..++||||+++..|+.+++
T Consensus 73 ~~~~~~~~~~~--~---~~--~~~~lvee~i~g~~E~~v~v 106 (108)
T 2cqy_A 73 GFRLSSQEAAS--S---FG--DDRLLIEKFIDNPRHISGPS 106 (108)
T ss_dssp HHHHHHHHHHH--H---TS--SCCEEEEECCSSSSCCCSCC
T ss_pred HHHHHHHHHHh--h---cC--CCcEEEeeccCCCcEEEEEe
Confidence 99988643210 0 11 15799999999667887654
No 16
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.17 E-value=3.4e-10 Score=113.96 Aligned_cols=104 Identities=27% Similarity=0.322 Sum_probs=85.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
+..-+++.+|++|+++|||+|++..+++.+|+.++++++| +|+||||....+ |+ ||.++ |++|+.
T Consensus 102 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~e~~~~~~~~g---~PvvvKp~~~~g--g~---------Gv~~v~~~~el~ 167 (412)
T 1vkz_A 102 RLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFS---PPYVIKADGLAR--GK---------GVLILDSKEETI 167 (412)
T ss_dssp HHHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTSC---SSEEEEESSCCS--SC---------CEEEESSHHHHH
T ss_pred HHhcCHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHH
Confidence 3446889999999999999999999999999999999998 999999976443 44 69999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++++.... ..|.. ..++||||++ +.|+.+.+..|.+
T Consensus 168 ~a~~~~~~~~~------~~g~~-~~vlvEe~i~-G~E~sv~~~~dg~ 206 (412)
T 1vkz_A 168 EKGSKLIIGEL------IKGVK-GPVVIDEFLA-GNELSAMAVVNGR 206 (412)
T ss_dssp HHHHHHHHTSS------STTCC-SCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHHHHhhcc------ccCCC-CeEEEEECCc-CcEEEEEEEECCC
Confidence 99998864310 01211 3799999999 8999999998754
No 17
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.17 E-value=4.1e-10 Score=114.32 Aligned_cols=169 Identities=15% Similarity=0.251 Sum_probs=113.4
Q ss_pred CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
-+++..|++|+++|||+|++. .+.+++|+.++++++| ||+||||.. |+.|+ ||.++ |++++.+
T Consensus 118 ~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g---~PvvvKp~~--g~gg~---------Gv~~v~~~~el~~ 183 (446)
T 3ouz_A 118 SDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIG---YPVILKAAA--GGGGR---------GMRVVENEKDLEK 183 (446)
T ss_dssp HSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHC---SSEEEEETT--CCTTC---------SEEEECSGGGHHH
T ss_pred CCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhC---CCEEEEECC--CCCCC---------CEEEECCHHHHHH
Confidence 578899999999999999997 8899999999999998 999999974 33344 69999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p 186 (394)
+++++....... .+ -..++||||+++.+|+.+.+..|... .++.++ .....+ .+.+ .++.. ..|
T Consensus 184 ~~~~~~~~~~~~-----~~--~~~~lvEe~i~g~~e~~v~v~~d~~g--~~~~~~-~~~~~~---~~~~-~~~~~--~~p 247 (446)
T 3ouz_A 184 AYWSAESEAMTA-----FG--DGTMYMEKYIQNPRHIEVQVIGDSFG--NVIHVG-ERDCSM---QRRH-QKLIE--ESP 247 (446)
T ss_dssp HHHHHHHHHHHH-----HS--CCCEEEEECCSSCEEEEEEEEECTTS--CEEEEE-EEEEEE---EETT-EEEEE--EES
T ss_pred HHHHHHHHHHHh-----cC--CCCEEEEeCCCCCcEEEEEEEEcCCC--CEEEEe-eceeee---eecC-ceEEE--ECC
Confidence 998876442100 01 14799999999779999999999753 555554 212222 2222 22222 233
Q ss_pred CCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcC--Ccceeeecceee
Q 016159 187 FNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEINPLAE 238 (394)
Q Consensus 187 ~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~--d~~~lEINPLvv 238 (394)
...++.. .+.++++.+|+.+..- .+++.+. +..++||||..-
T Consensus 248 ~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~----------ve~~~~~~g~~~~iEiNpR~~ 298 (446)
T 3ouz_A 248 AILLDEKTRTRLHETAIKAAKAIGYEGAGT----------FEFLVDKNLDFYFIEMNTRLQ 298 (446)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTTCCEEEE----------EEEEECTTCCEEEEEEESSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCceE----------EEEEEeCCCCEEEEEeECCCC
Confidence 3235553 3344555666653100 1122232 477899999864
No 18
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.15 E-value=1.4e-10 Score=117.50 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=84.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHH----hCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD----AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~----lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ 101 (394)
+..-+++..|++|+++|||+|++..+.+.+|+.+++++ + +|+||||.. .|+.|| ||.++ |+
T Consensus 129 ~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~~~~~~~~~~~----~P~VvKp~~-~g~~G~---------Gv~~v~~~ 194 (419)
T 4e4t_A 129 AVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAV----LPGILKTAR-LGYDGK---------GQVRVSTA 194 (419)
T ss_dssp HHHTCHHHHHHHHHHTTCCBCCEEEECSHHHHHTSCHHHHHTT----CSEEEEESS-SCCTTT---------TEEEECSH
T ss_pred HHhcCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhhcccc----CCEEEEecC-CCCCCC---------ceEEECCH
Confidence 34468899999999999999999999999999888777 6 699999951 344455 68899 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 102 ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
+|+.++++.+ + + ..++||||++.++|+.+.+.+|... -++.+.
T Consensus 195 ~el~~a~~~~-~-----------~---~~~lvEe~i~~~~Eisv~v~~~~~G--~~~~~~ 237 (419)
T 4e4t_A 195 REARDAHAAL-G-----------G---VPCVLEKRLPLKYEVSALIARGADG--RSAAFP 237 (419)
T ss_dssp HHHHHHHHHT-T-----------T---CCEEEEECCCEEEEEEEEEEECTTS--CEEECC
T ss_pred HHHHHHHHhc-C-----------C---CcEEEeecCCCCeEEEEEEEEcCCC--CEEEEe
Confidence 9999988764 1 1 4799999999889999999998763 344444
No 19
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.15 E-value=1.3e-10 Score=130.43 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
-+++..|++|+++|||+|++..+.+.+|+.++++++| ||+||||....| |+ ||.++ |++|+.+++
T Consensus 127 ~DK~~~k~~l~~~Gipvp~~~~v~~~~ea~~~~~~ig---~PvVvKp~~~~G--g~---------Gv~iv~~~eel~~~~ 192 (1073)
T 1a9x_A 127 EDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVG---FPCIIRPSFTMG--GS---------GGGIAYNREEFEEIC 192 (1073)
T ss_dssp HSHHHHHHHHHHTTCCCCSEEEESSHHHHHHHHHHHC---SSEEEEETTCCT--TT---------TCEEESSHHHHHHHH
T ss_pred hCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHcC---CCEEEEECCCCC--CC---------ceEEeCCHHHHHHHH
Confidence 5888999999999999999999999999999999998 999999976444 33 57788 999999999
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
++.+... ....++|||++++.+|+.+.+.+|+..
T Consensus 193 ~~~~~~~-----------~~~~vlvEe~I~G~~E~~v~v~~d~~g 226 (1073)
T 1a9x_A 193 ARGLDLS-----------PTKELLIDESLIGWKEYEMEVVRDKND 226 (1073)
T ss_dssp HHHHHHC-----------TTSCEEEEECCTTSEEEEEEEEECTTC
T ss_pred HHHHhhC-----------CCCcEEEEEccCCCeEEEEEEEEeCCC
Confidence 8876432 124899999999778999999999754
No 20
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.14 E-value=3.9e-10 Score=111.92 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=82.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHH----HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVD----EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~e----ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e 102 (394)
...+++.+|++|+++|||+|++..+++.+ ++.++++++| +|+||||.. ++.|+ ||.++ |++
T Consensus 137 ~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~lg---~PvvVKP~~--ggss~---------Gv~~v~~~~ 202 (364)
T 3i12_A 137 ACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLG---LPLFVKPAN--QGSSV---------GVSKVANEA 202 (364)
T ss_dssp HHHCHHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHHHHHHHC---SSEEEEETT--CCTTT---------TCEEESSHH
T ss_pred HHHCHHHHHHHHHHCCCCCCCEEEEEccccchhhHHHHHHhcC---CCEEEEECC--CCCCc---------CeEEeCCHH
Confidence 34689999999999999999999999887 8888889998 999999974 44444 68888 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
|+.+++++++... ..++||||++ ++|+.+++..|+.
T Consensus 203 el~~a~~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~~~~ 238 (364)
T 3i12_A 203 QYQQAVALAFEFD-------------HKVVVEQGIK-GREIECAVLGNDN 238 (364)
T ss_dssp HHHHHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHHHHHhcC-------------CcEEEEcCcC-CeEEEEEEEeCCC
Confidence 9999988875421 4899999999 5999999998864
No 21
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.10 E-value=7.2e-10 Score=110.61 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=76.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHH----HHHHHHHhCCCCCc-EEEEEeeecCCCCCCcccCCCcccEEEC-CH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~ee----a~~~a~~lg~~~~P-vVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ 101 (394)
...+++.+|++|+++|||+|++..+.+.++ +.++++++| +| +||||.. ++.|+ ||.++ |+
T Consensus 137 ~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg---~P~vvVKP~~--ggss~---------Gv~~v~~~ 202 (372)
T 3tqt_A 137 VCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWG---TSELFVKAVS--LGSSV---------ATLPVKTE 202 (372)
T ss_dssp HHHSHHHHHHHHHHTTCCBCCCEEECTTSCCTTHHHHHHHHC------CEEEEESS--CCSGG---------GEEEECSH
T ss_pred HHhCHHHHHHHHHHCCcCCCCEEEEechhhhhhHHHHHHHhcC---CCeEEEEECC--CCCCC---------CEEEECCH
Confidence 345788999999999999999999987764 456778888 99 9999964 44444 79899 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 102 ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
+|+.+++++.+.. + ..++|||+++ ++|+.+++..|+
T Consensus 203 ~eL~~a~~~a~~~----------~---~~vlVEe~I~-G~E~~v~vl~~~ 238 (372)
T 3tqt_A 203 TEFTKAVKEVFRY----------D---DRLMVEPRIR-GREIECAVLGNG 238 (372)
T ss_dssp HHHHHHHHHHTTT----------C---SCEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHHHHHHhc----------C---CCEEEECCCC-CEEEEEEEEeCC
Confidence 9999998876432 1 4799999999 899999999886
No 22
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.09 E-value=4.3e-10 Score=114.19 Aligned_cols=103 Identities=22% Similarity=0.273 Sum_probs=86.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
...+++.+|++|+++|||+|++..+++.+++.++++++| +|+||||....+ || ||.++ |++|+.+
T Consensus 104 ~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea~~~~~~~g---~PvVvKp~~~~g--g~---------GV~iv~~~~el~~ 169 (431)
T 3mjf_A 104 LEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKG---APIVIKADGLAA--GK---------GVIVAMTQEEAET 169 (431)
T ss_dssp HHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHHHC---SSEEEEESSSCT--TC---------SEEEECSHHHHHH
T ss_pred HhhCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHHcC---CeEEEEECCCCC--CC---------cEEEeCCHHHHHH
Confidence 446889999999999999999999999999999999998 999999986544 44 68889 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++++++..... |..-..++||||++ +.|+.+.+..|..
T Consensus 170 a~~~~~~~~~~-------g~~~~~vlvEe~i~-G~E~sv~~~~dg~ 207 (431)
T 3mjf_A 170 AVNDMLAGNAF-------GDAGHRIVVEEFLD-GEEASFIVMVDGE 207 (431)
T ss_dssp HHHHHHTTHHH-------HCCCCCEEEEECCC-SEEEEEEEEEESS
T ss_pred HHHHHHhhccc-------cCCCCeEEEEEeeC-CcEEEEEEEEcCC
Confidence 99998743211 11125899999999 7999999998864
No 23
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.08 E-value=2.2e-09 Score=112.22 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=84.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceee--------------------------CCHHHHHHHHHHhCCCCCcEEEEEeeec
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAV--------------------------ASVDEVKKAIQDAFPDHKELVVKSQILA 80 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~--------------------------~s~eea~~~a~~lg~~~~PvVvK~q~~~ 80 (394)
+..-+++.+|++|+++|||+|++..+ .+++|+.++++++| +|+||||....
T Consensus 169 ~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g---~PvVvKp~~g~ 245 (554)
T 1w96_A 169 RSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIG---FPVMIKASEGG 245 (554)
T ss_dssp HHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHC---SSEEEEETTCC
T ss_pred HHHhCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcC---CCEEEEECCCC
Confidence 34568899999999999999998764 78999999999998 99999997644
Q ss_pred CCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 81 GGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 81 ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
| |+ ||.++ |++|+.++++++.... .+ ..++||||++.++|+.+.+..|..
T Consensus 246 g--g~---------Gv~~v~~~~el~~a~~~~~~~~--------~~---~~vlvEe~i~g~~e~sv~vl~d~~ 296 (554)
T 1w96_A 246 G--GK---------GIRQVEREEDFIALYHQAANEI--------PG---SPIFIMKLAGRARHLEVQLLADQY 296 (554)
T ss_dssp T--TT---------TEEEECSHHHHHHHHHHHHHHS--------TT---CCEEEEECCCSCEEEEEEEEECTT
T ss_pred C--Cc---------eEEEECCHHHHHHHHHHHHhhc--------cC---CCEEEEEecCCCcEEEEEEEEcCC
Confidence 3 44 68889 9999999998876432 12 479999999977999999999874
No 24
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.07 E-value=1.3e-09 Score=107.78 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHH---HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVD---EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~e---ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
..+++.+|++|+++|||+|++..+.+.+ ++.++++++| ||+||||.. ++.|+ ||.++ |++++
T Consensus 137 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~lg---~PvvVKP~~--gg~s~---------Gv~~v~~~~el 202 (357)
T 4fu0_A 137 CMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLT---YPLFIKPVR--AGSSF---------GITKVIEKQEL 202 (357)
T ss_dssp HHCHHHHHHHHHHTTCBCCCEEEEEGGGHHHHHHHHHHHCC---SSEEEEETT--CSSST---------TCEEESSHHHH
T ss_pred HhCHHHHHHHHHHCCCCCCCEEeecCCChHHHHHHHHHhcC---CCEEEEECC--CCCCC---------ceEEeccHHhH
Confidence 3678999999999999999999886543 3456677898 999999954 44454 68888 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
.++++..... + ..++||++++ ++|+.+++..|..
T Consensus 203 ~~~~~~a~~~----------~---~~vlvE~~i~-G~e~~v~vl~~~~ 236 (357)
T 4fu0_A 203 DAAIELAFEH----------D---TEVIVEETIN-GFEVGCAVLGIDE 236 (357)
T ss_dssp HHHHHHHTTT----------C---SEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHHhcc----------C---CeEEEEEecC-CEEEEEEEEecCC
Confidence 9988876432 2 5799999997 8999999988754
No 25
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.07 E-value=6.1e-09 Score=103.79 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=83.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
....+++..|++|+++|||+|++..+.+.+|+.++++++| ||+||||... ++.|+ ||.++ |++++.
T Consensus 108 ~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~~-~~~g~---------Gv~~v~~~~el~ 174 (389)
T 3q2o_A 108 SKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAELS---YPSVLKTTTG-GYDGK---------GQVVLRSEADVD 174 (389)
T ss_dssp HHTTSHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC---SSEEEEESSC-CSSSC---------CEEEESSGGGHH
T ss_pred HHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcC---CCEEEEeCCC-CCCCC---------CeEEECCHHHHH
Confidence 4457899999999999999999999999999999999998 9999999642 12245 68888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
++++.+.. ..++||||++.+.|+.+.+..|...
T Consensus 175 ~~~~~~~~---------------~~~lvEe~i~g~~E~~v~~~~~~~G 207 (389)
T 3q2o_A 175 EARKLANA---------------AECILEKWVPFEKEVSVIVIRSVSG 207 (389)
T ss_dssp HHHHHHHH---------------SCEEEEECCCCSEEEEEEEEECTTC
T ss_pred HHHHhcCC---------------CCEEEEecccCceEEEEEEEEcCCC
Confidence 88876521 4799999999779999999998653
No 26
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.05 E-value=2.8e-09 Score=108.48 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=85.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
+..-+++.+|++|+++|||+|++. .+++.+|+.++++++| +|+||||....| |+ ||.++ |++|
T Consensus 116 ~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g---~PvvvKp~~g~g--g~---------Gv~~v~~~~e 181 (461)
T 2dzd_A 116 DMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHG---YPIIIKAALGGG--GR---------GMRIVRSKSE 181 (461)
T ss_dssp HHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHC---SCEEEEESTTCS--SS---------SEEEECCGGG
T ss_pred HHhhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhcC---CcEEEEeCCCCC--CC---------CEEEeCCHHH
Confidence 345688999999999999999997 7899999999999998 999999976433 44 68889 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
+.+++++++..... ..|. ..++||||+++.+|+.+.+..|...
T Consensus 182 l~~~~~~~~~~~~~-----~~~~--~~~lvEe~i~g~~e~~v~v~~~~~G 224 (461)
T 2dzd_A 182 VKEAFERAKSEAKA-----AFGS--DEVYVEKLIENPKHIEVQILGDYEG 224 (461)
T ss_dssp HHHHHHHHHHHHHH-----HTSC--CCEEEEECCCSCEEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHh-----hcCC--CcEEEEECCCCCeEEEEEEEEcCCC
Confidence 99998887643210 0121 4799999999778999999998653
No 27
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.04 E-value=1.8e-09 Score=108.16 Aligned_cols=95 Identities=12% Similarity=0.159 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHcC-CCCCCceeeCCH----HHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159 29 NIHEYQGAELMAKYG-INVPKGLAVASV----DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (394)
Q Consensus 29 ~L~E~~aK~lL~~~G-Ipvp~~~~~~s~----eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e 102 (394)
..+++.+|++|+++| ||+|++..+.+. +++.++++++| +|+||||.. ++.++ ||.++ |++
T Consensus 159 ~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~~~~~~~~~~~~lg---~PvvVKP~~--ggss~---------GV~~v~~~~ 224 (383)
T 3k3p_A 159 AMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLI---YPVFVKPAN--MGSSV---------GISKAENRT 224 (383)
T ss_dssp HHCHHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHHHHHHCC---SSEEEEECC-----------------CEEESSHH
T ss_pred HhCHHHHHHHHHhCCCcCCCCEEEEeCccchhHHHHHHHHhcC---CCEEEEeCC--CCCCC---------CEEEECCHH
Confidence 357899999999999 999999999876 57778888998 999999975 33344 68888 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
|+.+++++.+... ..++||||++ ++|+.+++..|.
T Consensus 225 el~~al~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~d~ 259 (383)
T 3k3p_A 225 DLKQAIALALKYD-------------SRVLIEQGVD-AREIEVGILGNT 259 (383)
T ss_dssp HHHHHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHHHHHhCC-------------CeEEEEcCCC-CeEEEEEEEeCC
Confidence 9999988875321 4899999998 899999999874
No 28
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.01 E-value=4.6e-09 Score=105.97 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=76.7
Q ss_pred cCCCHHHHHHHH-HHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 28 LNIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL-~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
..-+++..|++| +++|||+|++..+++.+++.++++++| +|+|+||... +.|+ ||.++ |++|+.
T Consensus 117 ~~~dK~~~k~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~g--~gg~---------Gv~~v~~~~el~ 182 (433)
T 2dwc_A 117 IAMHRERLRETLVKEAKVPTSRYMYATTLDELYEACEKIG---YPCHTKAIMS--SSGK---------GSYFVKGPEDIP 182 (433)
T ss_dssp HHHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHHHHHHHC---SSEEEEECCC-----------------EEECSGGGHH
T ss_pred HhhCHHHHHHHHHHhcCCCCCCeeEeCCHHHHHHHHHhcC---CCEEEEECCC--cCCC---------CeEEECCHHHHH
Confidence 345788899999 899999999999999999999999998 9999999753 3344 68888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
+++++++.... + .-..++||||++.+.|+.+.+..|.
T Consensus 183 ~~~~~~~~~~~--------~-~~~~~lvEe~i~~g~E~sv~~~~~~ 219 (433)
T 2dwc_A 183 KAWEEAKTKAR--------G-SAEKIIVEEHIDFDVEVTELAVRHF 219 (433)
T ss_dssp HHHHC------------------CCEEEEECCCCSEEEEECCEEEE
T ss_pred HHHHHHHhhcc--------c-CCCCEEEEccCCCCeeEEEEEEecc
Confidence 98887754321 1 1147999999988899999988875
No 29
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.97 E-value=7e-10 Score=118.92 Aligned_cols=171 Identities=12% Similarity=0.152 Sum_probs=65.5
Q ss_pred cCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
..-+++.+|++|+++|||+|++. .+.+++++.++++++| ||+|+||... +-|| ||+++ |++|+
T Consensus 112 ~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~ig---yPvVvKp~~g--gggk---------Gv~iv~~~~el 177 (681)
T 3n6r_A 112 AMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIG---YPVMIKASAG--GGGK---------GMRIAWNDQEA 177 (681)
T ss_dssp HTTSHHHHHHHHHTTTCCCCCC----------------------------------------------------------
T ss_pred HhCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhcC---CcEEEEECCC--CCCC---------CEEEECCHHHH
Confidence 44689999999999999999985 7889999999999998 9999999753 3344 68899 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEec
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v 184 (394)
.++++++..... ...| -..++||||++..+|+.+.+..|... .++.++ ...+. +.+.+ .++...
T Consensus 178 ~~a~~~~~~ea~-----~~fg--~~~vlvEe~I~g~rei~V~v~~d~~G--~vv~l~-~rd~s---~qr~~-~k~~e~-- 241 (681)
T 3n6r_A 178 REGFQSSKNEAA-----NSFG--DDRIFIEKFVTQPRHIEIQVLCDSHG--NGIYLG-ERECS---IQRRN-QKVVEE-- 241 (681)
T ss_dssp --------------------------------CCSCEEEEEEEECCSSS--CCEEEE-EEECC---CEETT-EECEEE--
T ss_pred HHHHHHHHHHHH-----HhCC--CCcEEEEeccCCCcEEEEEEEEeCCC--CEEEEe-eeecc---eeccC-ccEEEe--
Confidence 999888754321 0112 15799999999779999999999753 556554 21122 22233 233333
Q ss_pred CCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceee
Q 016159 185 DVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAE 238 (394)
Q Consensus 185 ~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv 238 (394)
.|...++++ .+.++++.+|+.+.-- .+++.+ .+..++|+||..-
T Consensus 242 ~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~----------vEf~~d~dg~~~~lEiNpR~~ 294 (681)
T 3n6r_A 242 APSPFLDEATRRAMGEQAVALAKAVGYASAGT----------VEFIVDGQKNFYFLEMNTRLQ 294 (681)
T ss_dssp ESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEE----------EEEEECTTSCCCCCEEECSCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEeCCCCEEEEecccccC
Confidence 333335553 3455566677653210 012222 2478999999973
No 30
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=98.96 E-value=3.8e-09 Score=104.82 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=77.6
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-C--HHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K--KEEV 104 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s--~ee~ 104 (394)
..-++...|++|+++|||+|++..+++.+|+.++++++| ||+||||... |..|| |+.++ | ++|+
T Consensus 76 ~~~DK~~~k~~l~~~GIptp~~~~v~~~~e~~~~~~~~G---~P~VvKp~~~-G~~Gk---------Gv~~v~~~~~~el 142 (355)
T 3eth_A 76 IIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLG---ELAIVKRRTG-GYDGR---------GQWRLRANETEQL 142 (355)
T ss_dssp HHHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHC---SEEEEEESSS-CCTTT---------TEEEEETTCGGGS
T ss_pred HhcCHHHHHHHHHHCccCCCCEEEECCHHHHHHHHHHcC---CCEEEEecCC-CCCCC---------eEEEEcCCCHHHH
Confidence 345788899999999999999999999999999999998 9999999642 23455 68888 8 8887
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
.+++ + + .++||+|++.++|+.+.+.+|...
T Consensus 143 ~~a~-------~--------~----~vivEe~I~~~~Eisv~v~~~~~G 172 (355)
T 3eth_A 143 PAEC-------Y--------G----ECIVEQGINFSGEVSLVGARGFDG 172 (355)
T ss_dssp CGGG-------T--------T----TEEEEECCCCSEEEEEEEEECTTS
T ss_pred HHHh-------h--------C----CEEEEEccCCCcEEEEEEEEcCCC
Confidence 6521 1 2 599999999889999999988753
No 31
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.94 E-value=5.3e-09 Score=105.07 Aligned_cols=102 Identities=25% Similarity=0.275 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
.-+++..|++|+++|||+|++..+++.+|+.+++++++ +|+|+||....+ |+ ||.++ |++|+.++
T Consensus 100 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~---~P~vvKp~~~~~--g~---------Gv~~v~~~~el~~~ 165 (422)
T 2xcl_A 100 EGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKG---APIVIKADGLAA--GK---------GVTVAMTEEEAIAC 165 (422)
T ss_dssp HHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHC---SSEEEEESSCGG--GT---------CEEEESSHHHHHHH
T ss_pred hcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------cEEEECCHHHHHHH
Confidence 34888999999999999999999999999999999998 999999975433 44 69899 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++.... .|..-..++||||++ +.|+.+.+..|..
T Consensus 166 ~~~~~~~~~-------~g~~~~~~lvEe~i~-g~E~sv~~~~dG~ 202 (422)
T 2xcl_A 166 LHDFLEDEK-------FGDASASVVIEEYLS-GEEFSLMAFVKGE 202 (422)
T ss_dssp HHHHHTSCT-------TGGGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHHhhhh-------ccCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 998865321 122225799999999 8999999988743
No 32
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.92 E-value=7.7e-10 Score=118.47 Aligned_cols=169 Identities=13% Similarity=0.196 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
-+++.+|++|+++|||+|++.. +.+++++.++++++| ||+||||... +-|| ||+++ |++|+.+
T Consensus 140 ~DK~~~k~~l~~~GVpvpp~~~~~~~s~~e~~~~a~~ig---yPvvvKp~~G--~Gg~---------Gv~iv~~~~el~~ 205 (675)
T 3u9t_A 140 GSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIG---YPVLLKAAAG--GGGK---------GMKVVEREAELAE 205 (675)
T ss_dssp TSHHHHHHHHHHTTCCBCCCCCSCCCCTTHHHHHHHHSC---SSBCCBCCC-----------------CCCBCCTTTHHH
T ss_pred chHHHHHHHHHHcCcCcCCccccCCCCHHHHHHHHHhCC---CcEEEEECCC--CCCc---------cEEEECCHHHHHH
Confidence 5789999999999999999876 789999999999998 9999999753 3344 68889 9999998
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p 186 (394)
+++.+..... ...| -..++||||++..+|+.+.+..|... .++.++ .-... +.+.+ .++.... |
T Consensus 206 a~~~~~~ea~-----~~fg--~~~vlvEeyI~g~reiev~v~~d~~G--~vv~l~-~rd~s---~qr~~-qk~ie~~--P 269 (675)
T 3u9t_A 206 ALSSAQREAK-----AAFG--DARMLVEKYLLKPRHVEIQVFADRHG--HCLYLN-ERDCS---IQRRH-QKVVEEA--P 269 (675)
T ss_dssp HHSCCCC---------------CCCBCCBCCSSCBCEEEEEEECSSS--CEEEEE-EEECC---CBSSS-SBCEEEE--S
T ss_pred HHHHHHHHHH-----HhcC--CCcEEEEeecCCCcEEEEEEEEcCCC--CEEEEe-ccccc---eeecc-ceEEEEC--C
Confidence 8876643321 0112 14799999999779999999999753 455553 11122 23333 3333332 3
Q ss_pred CCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceee
Q 016159 187 FNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAE 238 (394)
Q Consensus 187 ~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv 238 (394)
...+++. .+.++++.+|+.+.-- .+++.+ .++.++|+||..-
T Consensus 270 a~~l~~~~~~~l~~~a~~~~~alg~~G~~~----------vEf~~~~dG~~~~iEiNpR~~ 320 (675)
T 3u9t_A 270 APGLGAELRRAMGEAAVRAAQAIGYVGAGT----------VEFLLDERGQFFFMEMNTRLQ 320 (675)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTTCCSEEE----------EECCBCTTSCBCBCEEESSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCccceE----------EEEEEcCCCCEEEEecccccc
Confidence 2235553 3345556666643100 011222 2478999999974
No 33
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.92 E-value=7.5e-09 Score=104.03 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
-+++..|++|+++|||+|++..+++.+++.++++++| +|+|+||....+ |+ ||.++ |++|+.+++
T Consensus 101 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~---~PvvvKp~~g~g--g~---------Gv~~v~~~~el~~~~ 166 (424)
T 2yw2_A 101 GSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKVG---APIVVKADGLAA--GK---------GAVVCETVEKAIETL 166 (424)
T ss_dssp HCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHC---SSEEEEESSCCT--TC---------SEEEESSHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcC---CcEEEEeCCCCC--CC---------CEEEECCHHHHHHHH
Confidence 4888999999999999999999999999999999998 999999975433 44 68899 999999999
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
++++.... .|..-..++||||++ +.|+.+.+..|.
T Consensus 167 ~~~~~~~~-------~g~~~~~~lvEe~i~-g~E~sv~~~~~G 201 (424)
T 2yw2_A 167 DRFLNKKI-------FGKSSERVVIEEFLE-GEEASYIVMING 201 (424)
T ss_dssp HHHHTSCT-------TGGGGSSEEEEECCC-SEEEEEEEEEET
T ss_pred HHHHhhhh-------ccCCCCeEEEEECCC-CcEEEEEEEEcC
Confidence 98865321 222225799999999 899999988864
No 34
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.92 E-value=6.3e-09 Score=105.80 Aligned_cols=102 Identities=29% Similarity=0.294 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
..+++..|++|+++|||+|++..+++++|+.+++++++ +|+||||....+ |+ ||.++ |++|+.++
T Consensus 121 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~---~PvVvKp~~~~g--g~---------Gv~~v~~~~el~~~ 186 (451)
T 2yrx_A 121 EGSKAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQKG---APIVIKADGLAA--GK---------GVTVAQTVEEALAA 186 (451)
T ss_dssp HHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHC---SSEEEEECC------C---------CEEEESSHHHHHHH
T ss_pred hhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcC---CcEEEEeCCCCC--CC---------cEEEECCHHHHHHH
Confidence 34788999999999999999999999999999999998 999999976443 44 68899 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++.... .|.....++||||++ +.|+.+.+..|.+
T Consensus 187 ~~~~~~~~~-------~g~~~~~~lvEe~i~-G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 187 AKAALVDGQ-------FGTAGSQVVIEEYLE-GEEFSFMAFVNGE 223 (451)
T ss_dssp HHHHHHHSC-------CBTTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHHhccc-------cCCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 988865321 122225899999999 8999999988743
No 35
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.91 E-value=1.1e-08 Score=114.88 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
-+++..+++|+++|||+|++..+++.+|+.++++++| ||+||||....| |+ ||.++ |++++.+++
T Consensus 673 ~DK~~~~~ll~~~GIp~P~~~~~~s~eea~~~~~~ig---~PvvVKP~~~~g--G~---------Gv~iv~~~~el~~~~ 738 (1073)
T 1a9x_A 673 EDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIG---YPLVVRASYVLG--GR---------AMEIVYDEADLRRYF 738 (1073)
T ss_dssp HSHHHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHHC---SSEEEEC------------------CEEEECSHHHHHHHH
T ss_pred hCHHHHHHHHHHcCcCCCCceEECCHHHHHHHHHHcC---CCEEEEECCCCC--CC---------CeEEECCHHHHHHHH
Confidence 5678889999999999999999999999999999998 999999976544 33 68899 999999998
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++++... .-..++||+|+++.+|+.+.+..|+.
T Consensus 739 ~~a~~~~-----------~~~~vlvEefI~g~~E~~V~~l~d~~ 771 (1073)
T 1a9x_A 739 QTAVSVS-----------NDAPVLLDHFLDDAVEVDVDAICDGE 771 (1073)
T ss_dssp HHCC-------------------EEEBCCTTCEEEEEEEEECSS
T ss_pred HHHHhhC-----------CCCcEEEEEccCCCcEEEEEEEEECC
Confidence 8764321 11479999999966699999999874
No 36
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.91 E-value=8.2e-10 Score=124.58 Aligned_cols=169 Identities=13% Similarity=0.153 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
-+++.+|++|+++|||+|++. .+.+++|+.++++++| ||+||||....| |+ ||+++ |++|+.+
T Consensus 133 ~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~ig---yPvVVKp~~g~G--G~---------Gv~iv~s~eEL~~ 198 (1165)
T 2qf7_A 133 GNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIG---YPVMLKASWGGG--GR---------GMRVIRSEADLAK 198 (1165)
T ss_dssp HSHHHHHHHHHHTTCCBC--------------------------------------------------------------
T ss_pred CCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHHH
Confidence 578899999999999999998 7889999999999998 999999976443 44 68899 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p 186 (394)
+++++..... ...| -..++||||++.++|+.+.+..|+.. .++.+... ...+.+.+ .+. ....|
T Consensus 199 a~~~~~~~a~-----~~fg--~~~vlVEefI~gg~EisV~vl~D~~G--~vv~l~~r----~~s~~r~~-~~~--~e~~P 262 (1165)
T 2qf7_A 199 EVTEAKREAM-----AAFG--KDEVYLEKLVERARHVESQILGDTHG--NVVHLFER----DCSVQRRN-QKV--VERAP 262 (1165)
T ss_dssp ----------------------------CCCSSEEEEEEEEEECTTS--CEEEEEEE----EEEEEETT-EEE--EEEES
T ss_pred HHHHHHHHHH-----hhcC--CCcEEEEEeccCCcEEEEEEEEcCCC--cEEEEEee----cccceecc-cce--EEecc
Confidence 8888754321 0012 15799999999889999999999764 34433211 11222222 122 22334
Q ss_pred CCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc---CCcceeeecceee
Q 016159 187 FNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE 238 (394)
Q Consensus 187 ~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e---~d~~~lEINPLvv 238 (394)
...++++ .++++++.+|+.+..- .+++.+ .+..++||||..-
T Consensus 263 a~~l~~~~~~~i~~~a~~i~~alg~~G~~~----------vEf~vd~~dg~~~~iEiNpR~~ 314 (1165)
T 2qf7_A 263 APYLSEAQRQELAAYSLKIAGATNYIGAGT----------VEYLMDADTGKFYFIEVNPRIQ 314 (1165)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCCEEEE----------EEEEEETTTTEEEEEEEECSCC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCccee----------EEEEEECCCCCEEEEEEEcCCC
Confidence 3335653 4455666777654210 122333 2478999999865
No 37
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.89 E-value=1.7e-09 Score=116.85 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHH-HHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC----CHHHHH
Q 016159 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAI-QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEVE 105 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a-~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~----s~ee~~ 105 (394)
++..+|++|+++|||+|++.++.+++++.+++ +.+| +|+||||.. |+.|+ ||.++ |.+++.
T Consensus 484 DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~g---~PvVVKP~~--G~~G~---------GV~iv~~~~s~eel~ 549 (750)
T 3ln6_A 484 NKVVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQD---KPIVVKPKS--TNFGL---------GISIFKTSANLASYE 549 (750)
T ss_dssp TSHHHHHHHHHTTCCCCCCCCEETTTTHHHHHHHSSS---SCEEEEETT--CCSSS---------SCEEESSCCCHHHHH
T ss_pred CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcC---CcEEEEeCC--CCCCC---------CEEEEeCCCCHHHHH
Confidence 78899999999999999999999999998877 6677 999999954 55566 57763 799999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCC----ceeeeeccCCCcceeeccc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTA----GPIIIGCSKGGTSIEDLAE 173 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~----~Pvi~~s~~GGv~iE~~~~ 173 (394)
++++.++.. + ..++||||++ |.|+.+.+..|+... -|..+.| .|+..|+++-+
T Consensus 550 ~a~~~~~~~----------~---~~vlVEefI~-G~E~~v~Vvgg~vvaa~~r~p~~v~G-dG~~tI~eLI~ 606 (750)
T 3ln6_A 550 KAIDIAFTE----------D---SAILVEEYIE-GTEYRFFVLEGDCIAVLLRVAANVVG-DGIHTISQLVK 606 (750)
T ss_dssp HHHHHHHHH----------C---SEEEEEECCC-SEEEEEEEETTEEEEEEEEECCEEEC-CTTCCHHHHHH
T ss_pred HHHHHHHhh----------C---CcEEEEeccC-CCEEEEEEECCEEEEEEEEecceEec-CCccCHHHHHH
Confidence 999887632 1 5899999999 899999998776542 1223344 78888887654
No 38
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.88 E-value=1e-08 Score=100.74 Aligned_cols=94 Identities=21% Similarity=0.205 Sum_probs=76.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
...+++..|++|+++|||+|++.++++.+ ...++++| +|+||||... +.++ ||.++ |++++.+
T Consensus 129 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~--~~~~~~lg---~PvvvKP~~~--~~s~---------Gv~~v~~~~el~~ 192 (346)
T 3se7_A 129 LCMDKSLTYLVARSAGIATPNFWTVTADE--KIPTDQLT---YPVFVKPARS--GSSF---------GVSKVAREEDLQG 192 (346)
T ss_dssp HHHSHHHHHHHHHHTTCBCCCEEEEETTS--CCCTTTCC---SSEEEEESSC--CTTT---------TCEEECSHHHHHH
T ss_pred HHhCHHHHHHHHHHcCcCcCCEEEEcCcH--HHHHHhcC---CCEEEEeCCC--CCCc---------CEEEECCHHHHHH
Confidence 34688999999999999999999998765 33455677 9999999753 3344 68888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
++++++.. + ..++||||++ ++|+.+++..|.
T Consensus 193 a~~~~~~~----------~---~~vlvEe~I~-G~E~~v~vl~~~ 223 (346)
T 3se7_A 193 AVEAAREY----------D---SKVLIEEAVI-GTEIGCAVMGNG 223 (346)
T ss_dssp HHHHHTTT----------C---SEEEEEECCC-SEEEEEEEEEET
T ss_pred HHHHHHhC----------C---CcEEEEeCcC-CEEEEEEEEecC
Confidence 98887532 1 5899999999 899999999885
No 39
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.87 E-value=1.1e-08 Score=103.95 Aligned_cols=101 Identities=26% Similarity=0.219 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCc-EEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~P-vVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
-+++..|++|+++|||+|++..+++.+++.++++++| +| +||||....+ |+ ||.++ |++|+.++
T Consensus 127 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvvKp~~~~g--g~---------Gv~~v~~~~el~~~ 192 (452)
T 2qk4_A 127 SSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSAD---FPALVVKASGLAA--GK---------GVIVAKSKEEACKA 192 (452)
T ss_dssp HBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHHCS---SCEEEEEESBC-----C---------CEEECSSHHHHHHH
T ss_pred cCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhCC---CCeEEEEeCCCCC--CC---------CEEEeCCHHHHHHH
Confidence 5788999999999999999999999999999999998 99 9999976433 44 69999 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++.... .|..-..++||||++ +.|+.+.+..|.+
T Consensus 193 ~~~~~~~~~-------~g~~~~~~lvEe~i~-G~E~sv~~~~dG~ 229 (452)
T 2qk4_A 193 VQEIMQEKA-------FGAAGETIVIEELLD-GEEVSCLCFTDGK 229 (452)
T ss_dssp HHHHTTC--------------CCEEEEECCC-SEEEEEEEEECSS
T ss_pred HHHHHhhhh-------ccCCCCeEEEEECCC-CCeEEEEEEECCC
Confidence 998865321 122225799999999 8999998887643
No 40
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.87 E-value=1.5e-08 Score=102.83 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
-+++..|++|+++|||+|++. .+++++++.++++++| +|+||||....+ |+ ||.++ |++|+.+
T Consensus 113 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g---~PvvvKp~~g~g--g~---------Gv~~v~~~~el~~ 178 (451)
T 1ulz_A 113 GDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIG---YPVLLKATAGGG--GR---------GIRICRNEEELVK 178 (451)
T ss_dssp HSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHC---SSEEEEECSSSS--CC---------SCEEESSHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcC---CCEEEEECCCCC--Cc---------cEEEeCCHHHHHH
Confidence 578899999999999999998 7899999999999998 999999976443 44 68888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeee
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~ 160 (394)
++++++.... . ..|. ..++|||++++++|+.+.+..|... .++.+
T Consensus 179 ~~~~~~~~~~---~--~~~~--~~~lvEe~i~g~~e~~v~v~~~~~G--~~~~~ 223 (451)
T 1ulz_A 179 NYEQASREAE---K--AFGR--GDLLLEKFIENPKHIEYQVLGDKHG--NVIHL 223 (451)
T ss_dssp HHHHHHHHHH---H--TTSC--CCEEEEECCCSCEEEEEEEEECTTS--CEEEE
T ss_pred HHHHHHHHHH---H--hcCC--CeEEEEEcccCCeEEEEEEEEcCCC--CEEEE
Confidence 9988764311 0 0121 4799999999778999999998743 34443
No 41
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.86 E-value=1.1e-08 Score=102.77 Aligned_cols=99 Identities=21% Similarity=0.256 Sum_probs=82.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
..-+++..|++|+++|||+|++..+++.+|+.+++++++ +|+|+||....+ |+ ||.++ |++|+.+
T Consensus 98 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~---~P~vvKp~~~~g--g~---------Gv~~v~~~~el~~ 163 (417)
T 2ip4_A 98 IEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEVG---VPVVVKDSGLAA--GK---------GVTVAFDLHQAKQ 163 (417)
T ss_dssp HHHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHHC---SSEEEECTTSCS--ST---------TCEEESCHHHHHH
T ss_pred HHcCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHcC---CCEEEEECCCCC--CC---------CEEEeCCHHHHHH
Confidence 335888999999999999999999999999999999998 999999965333 44 68888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++++++... .+ ..++||||++ +.|+.+.+..|.+
T Consensus 164 ~~~~~~~~~--------~~---~~~lvEe~i~-g~E~sv~~~~~G~ 197 (417)
T 2ip4_A 164 AVANILNRA--------EG---GEVVVEEYLE-GEEATVLALTDGE 197 (417)
T ss_dssp HHHHHTTSS--------SC---CCEEEEECCC-SCEEEEEEEESSS
T ss_pred HHHHHHhhc--------cC---CeEEEEECcc-CcEEEEEEEEeCC
Confidence 998886321 22 5799999999 8899998887643
No 42
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.85 E-value=4.9e-08 Score=100.33 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=76.2
Q ss_pred hhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 25 LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 25 ~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
.-++..+++.+|++|+++|||+|++..+++.+|+.++++++| +|+||||....| |+ ||.++ |++|
T Consensus 133 ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~lg---~PvVVKP~~g~g--g~---------Gv~iv~~~ee 198 (474)
T 3vmm_A 133 AAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIG---TPLILKPTYLAS--SI---------GVTLITDTET 198 (474)
T ss_dssp HHHHTTCHHHHHHHHHHTTSCCCCEEEECSHHHHHHHHHHSC---SSEEEEESSCCT--TT---------TCEEECCTTS
T ss_pred HHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcC---CCEEEEECCCCc--Cc---------eEEEECCHHH
Confidence 334567899999999999999999999999999999999998 999999975333 44 57788 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCee
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE 142 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E 142 (394)
+.++++++.............. .-..++||||++ +.|
T Consensus 199 l~~a~~~~~~~~~~~~~~~a~~-~~~~vlVEe~I~-G~e 235 (474)
T 3vmm_A 199 AEDEFNRVNDYLKSINVPKAVT-FEAPFIAEEFLQ-GEY 235 (474)
T ss_dssp HHHHHHHHHHHHTTSCCCTTCC-CSCSEEEEECCC-BCH
T ss_pred HHHHHHHHHHHHhhcccccccc-CCCeEEEEeCCC-Cce
Confidence 9999888754321000000000 116899999998 444
No 43
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.84 E-value=1.2e-08 Score=101.60 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHH----HHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~ee----a~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee 103 (394)
..+++..|++|+++|||+|++.++.+.++ +.++++++| +|+||||... +.|+ ||.++ |+++
T Consensus 133 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g---~PvvVKP~~~--~~s~---------Gv~~v~~~~e 198 (377)
T 1ehi_A 133 SFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG---NIVFVKAANQ--GSSV---------GISRVTNAEE 198 (377)
T ss_dssp HHSHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHC---SCEEEEESSC--CTTT---------TEEEECSHHH
T ss_pred HcCHHHHHHHHHHcCCCCCCEEEEeccccchHHHHHHHHhcC---CCEEEEeCCC--CCCc---------CEEEeCCHHH
Confidence 35788999999999999999999988765 667778898 9999999753 3344 68889 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+.+++++.+.. + ..++|||++++.+|+.+++..|+.
T Consensus 199 l~~a~~~~~~~----------~---~~vlvEe~I~G~~E~~v~vl~~~~ 234 (377)
T 1ehi_A 199 YTEALSDSFQY----------D---YKVLIEEAVNGARELEVGVIGNDQ 234 (377)
T ss_dssp HHHHHHHHTTT----------C---SCEEEEECCCCSCEEEEEEEESSS
T ss_pred HHHHHHHHHhc----------C---CcEEEEcCCCCCceEEEEEEcCCC
Confidence 99998886432 1 479999999843999999998753
No 44
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.83 E-value=1.9e-08 Score=102.04 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
.-+++..|++|+++|||+|++. .+++++++.++++++| +|+||||....+ |+ ||.++ |++|+.
T Consensus 112 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g---~PvvvKp~~g~g--g~---------Gv~~v~~~~el~ 177 (451)
T 2vpq_A 112 MGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIG---YPVIIKATAGGG--GK---------GIRVARDEKELE 177 (451)
T ss_dssp HHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHC---SSEEEEETTCCT--TC---------SEEEESSHHHHH
T ss_pred hcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhcC---CcEEEEECCCCC--CC---------CEEEeCCHHHHH
Confidence 3578899999999999999987 8899999999999998 999999975433 44 68889 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
+++++++..... . .+ -..++||||+++.+|+.+.+..|... .++.++
T Consensus 178 ~~~~~~~~~~~~--~---~~--~~~~lvEe~i~g~~e~~v~v~~~~~G--~~~~~~ 224 (451)
T 2vpq_A 178 TGFRMTEQEAQT--A---FG--NGGLYMEKFIENFRHIEIQIVGDSYG--NVIHLG 224 (451)
T ss_dssp HHHHHHHHHHHH--H---HS--CCCEEEEECCCSEEEEEEEEEECTTS--CEEEEE
T ss_pred HHHHHHHHHHHh--h---cC--CCcEEEEEecCCCeEEEEEEEEcCCC--CEEEEe
Confidence 999887643110 0 01 14799999999668999999998753 344443
No 45
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.83 E-value=4.7e-09 Score=118.73 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHcCCCCCCc-eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKG-LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~-~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
-+++.+|++|+++|||+|++ .++.+.+|+.++++++| ||+||||....| || ||+++ |++|+.++
T Consensus 143 ~DK~~ak~ll~~aGIPvpp~~~~v~s~eea~~~a~~iG---yPvVVKP~~GgG--Gk---------GV~iv~s~eEL~~a 208 (1236)
T 3va7_A 143 GLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVAKKLE---YPVMVKSTAGGG--GI---------GLQKVDSEDDIERV 208 (1236)
T ss_dssp HSTTHHHHHHHHTTCCCCC-------------------------------------------------------------
T ss_pred cCHHHHHHHHHHcCCCCCCeeEecCCHHHHHHHHHHcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHHHH
Confidence 35778999999999999885 67899999999999998 999999975433 44 68889 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s 161 (394)
++++...... ..+ -..++||||++..+|+.+.+..|... .++.++
T Consensus 209 ~~~~~~~a~~-----~~~--~~~vlVEeyI~G~rEisV~vl~Dg~g--~vv~l~ 253 (1236)
T 3va7_A 209 FETVQHQGKS-----YFG--DAGVFMERFVNNARHVEIQMMGDGFG--KAIAIG 253 (1236)
T ss_dssp -------------------------------CCEEEEEEEEEESSS--CEEEEE
T ss_pred HHHHHHHHHh-----ccC--CCcEEEeeccCCCeEEEEEEEecCCc--eEEEEe
Confidence 8887643210 011 14799999999779999999999764 455554
No 46
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.82 E-value=4.6e-09 Score=103.46 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=50.4
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeec-CCCCCCcccCCCcccEEEC-CHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILA-GGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~-ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
+..-+++..|++|+++|||+|++..++ .+++.++++++| +|+|+||.... + |+ ||.++ |.+|+
T Consensus 88 ~~~~dK~~~~~~l~~~gip~p~~~~~~-~~~~~~~~~~~~---~P~vvKp~~~~~~--g~---------Gv~~v~~~~el 152 (365)
T 2z04_A 88 YVKKSRIREKLFLKKHGFPVPEFLVIK-RDEIIDALKSFK---LPVVIKAEKLGYD--GK---------GQYRIKKLEDA 152 (365)
T ss_dssp HHHTCHHHHHHHHHTTTCCCCCEEEC------------------CEEEECC-----------------------------
T ss_pred HHhhCHHHHHHHHHHcCCCCCCEEEEc-HHHHHHHHHhcC---CCEEEEEcCCCcC--CC---------CeEEECCHHHH
Confidence 345789999999999999999999999 999998888888 99999997643 3 44 68888 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
.++++++++. ..++||||++.+.|+.+.+..|+.
T Consensus 153 ~~~~~~~~~~--------------~~~lvEe~i~~g~e~sv~~~~d~~ 186 (365)
T 2z04_A 153 NQVVKNHDKE--------------ESFIIEEFVKFEAEISCIGVRDRE 186 (365)
T ss_dssp --------------------------CEEEECCCCSEEEEEEEEECTT
T ss_pred HHHHHHhccC--------------CCEEEEccCCCCEEEEEEEEECCC
Confidence 8888776421 479999999888999999999875
No 47
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.82 E-value=1.2e-08 Score=101.17 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=82.4
Q ss_pred cCCCHHHHHHHH-HHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 28 LNIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL-~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
..-+++..|++| +++|||+|++..+++++++.++++++| +|+|+||... +.|+ ||.++ |++|+.
T Consensus 109 ~~~dK~~~~~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~g--~gg~---------Gv~~v~~~~el~ 174 (391)
T 1kjq_A 109 LTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIG---YPCIVKPVMS--SSGK---------GQTFIRSAEQLA 174 (391)
T ss_dssp HHHSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHC---SSEEEEESCC-----C---------CCEEECSGGGHH
T ss_pred HhhCHHHHHHHHHHhCCCCCCCeeeeCCHHHHHHHHHhcC---CCEEEEeCCC--CCCC---------CeEEECCHHHHH
Confidence 345788899999 899999999999999999999999998 9999999753 3344 68888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++++.... + .-..++||||++.+.|+.+.+..|..
T Consensus 175 ~~~~~~~~~~~--------~-~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 175 QAWKYAQQGGR--------A-GAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp HHHHHHHHHSG--------G-GCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred HHHHHHHhhcc--------c-CCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 99988764321 1 11479999999988999999888854
No 48
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.82 E-value=6.4e-10 Score=125.25 Aligned_cols=169 Identities=18% Similarity=0.235 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
-+++.+|++|+++|||+|++. .+.+.+++.++++++| ||+||||....| |+ ||+++ |++|+.+
T Consensus 117 ~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~iG---yPvVVKP~~GgG--g~---------Gv~vv~s~eeL~~ 182 (1150)
T 3hbl_A 117 GDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAG---FPLMIKATSGGG--GK---------GMRIVREESELED 182 (1150)
T ss_dssp HSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTC---SSEEEECCC------------------CEECCSSSCTH
T ss_pred CCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHHH
Confidence 578999999999999999998 7899999999999998 999999975333 44 68888 9999998
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p 186 (394)
+++++..... ...| -..++||||++..+|+.+.+..|... .++.+. ..... +.+.+ .++. ...|
T Consensus 183 a~~~a~~~a~-----~~fg--~~~vlVEeyI~G~reieV~vl~d~~G--~vv~l~-er~~s---~qr~~-~k~~--e~~P 246 (1150)
T 3hbl_A 183 AFHRAKSEAE-----KSFG--NSEVYIERYIDNPKHIEVQVIGDEHG--NIVHLF-ERDCS---VQRRH-QKVV--EVAP 246 (1150)
T ss_dssp HHHSSSSSCC-------------CBEEECCCSSCEEEEEEEEECSSS--CEEEEE-EEEEE---EESSS-CEEE--EESS
T ss_pred HHHHHHHHHH-----hhcC--CCcEEEEEccCCCcEEEEEEEEeCCC--CEEEEE-eeccc---eeccC-ceeE--EecC
Confidence 8887654321 0011 25799999999779999999999753 455443 11122 22233 2332 2344
Q ss_pred CCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc-CCcceeeecceee
Q 016159 187 FNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE-SDCTLLEINPLAE 238 (394)
Q Consensus 187 ~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e-~d~~~lEINPLvv 238 (394)
...+++. .+.++++.+|+.+.-. .+++.+ .+..++||||..-
T Consensus 247 a~~l~~~~~~~l~~~a~~~~~alG~~G~~~----------vEflvd~d~~y~iEINpR~~ 296 (1150)
T 3hbl_A 247 SVGLSPTLRQRICDAAIQLMENIKYVNAGT----------VEFLVSGDEFFFIEVNPRVQ 296 (1150)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTTCCEEEE----------EEEEEETTEEEEEEEECSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEECCeEEEEEEeCCCC
Confidence 4345653 3344556666654110 011222 2567899999875
No 49
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.81 E-value=1e-08 Score=102.00 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=84.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCC-CCCCcccCCCcccEEEC-CHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~gg-RgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
..-+++..|++|+++|||+|++..+.+.+++.++++++| +|+||||.. ++ .|+ ||.++ |++++.
T Consensus 107 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~--gg~~g~---------Gv~~v~~~~el~ 172 (377)
T 3orq_A 107 LLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLG---YPFIVKTRF--GGYDGK---------GQVLINNEKDLQ 172 (377)
T ss_dssp HHHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHHTC---SSEEEEESS--SCCTTT---------TEEEECSTTSHH
T ss_pred HhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcC---CCEEEEeCC--CCCCCC---------CeEEECCHHHHH
Confidence 345788999999999999999999999999999999998 999999964 33 355 68888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeee
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~ 160 (394)
++++.+.. ..++||||++...|+.+.+.+|... .+..+
T Consensus 173 ~a~~~~~~---------------~~~ivEe~i~g~~E~sv~~~~~~~g--~~~~~ 210 (377)
T 3orq_A 173 EGFKLIET---------------SECVAEKYLNIKKEVSLTVTRGNNN--QITFF 210 (377)
T ss_dssp HHHHHHTT---------------SCEEEEECCCEEEEEEEEEEECGGG--CEEEC
T ss_pred HHHHhcCC---------------CcEEEEccCCCCEEEEEEEEEeCCC--CEEEE
Confidence 98887631 4799999999669999999988653 34444
No 50
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.81 E-value=1.8e-08 Score=102.03 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCce--eeCCHHHH-HHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEV-KKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea-~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~ 104 (394)
.-+++.+|++|+++|||+|++. .+++++|+ .++++++| +|+||||....| |+ ||.++ |++|+
T Consensus 113 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~g---~PvvvKp~~g~g--g~---------Gv~~v~~~~el 178 (449)
T 2w70_A 113 MGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG---YPVIIKASGGGG--GR---------GMRVVRGDAEL 178 (449)
T ss_dssp HHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHC---SSEEEEETTCCT--TT---------TCEEECSHHHH
T ss_pred hcCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHhC---CcEEEEECCCCC--CC---------CEEEeCCHHHH
Confidence 3578899999999999999997 88999999 99999998 999999976443 44 68888 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
.+++++++..... . .| -..++||||+++++|+.+.+..|...
T Consensus 179 ~~~~~~~~~~~~~--~---~~--~~~~lvEe~i~g~~e~~v~~~~~~~G 220 (449)
T 2w70_A 179 AQSISMTRAEAKA--A---FS--NDMVYMEKYLENPRHVEIQVLADGQG 220 (449)
T ss_dssp HHHHHHHHHHHHH--H---HS--CCCEEEEECCSSCEEEEEEEEECTTS
T ss_pred HHHHHHHHHHHHh--h---cC--CCcEEEEeccCCCeEEEEEEEEcCCC
Confidence 9998887643110 0 01 14799999999779999999998643
No 51
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.78 E-value=9.6e-09 Score=98.52 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=76.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHH-HHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKK-AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~-~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
...+++.+|++|+++|||+|++.++.+.+++.. ++++++ +|+|+||....+ |+ ||.++ |++++.
T Consensus 94 ~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~---~P~vvKP~~~~~--s~---------Gv~~v~~~~el~ 159 (307)
T 3r5x_A 94 ICMDKNISKKILRYEGIETPDWIELTKMEDLNFDELDKLG---FPLVVKPNSGGS--SV---------GVKIVYDKDELI 159 (307)
T ss_dssp HHHCHHHHHHHHHHTTCCCCCEEEEESSSCCCHHHHHHHC---SSEEEEECC------C---------CCEEECSHHHHH
T ss_pred HHcCHHHHHHHHHHCCCCCCCEEEEeChhhhhHHHHHhcC---CCEEEEeCCCCC--CC---------CEEEeCCHHHHH
Confidence 446889999999999999999999988777654 777888 999999975433 33 68888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D 150 (394)
+++++++... ..++||||++ +.|+.+.+..+
T Consensus 160 ~~~~~~~~~~-------------~~~lvee~i~-G~e~~v~v~~g 190 (307)
T 3r5x_A 160 SMLETVFEWD-------------SEVVIEKYIK-GEEITCSIFDG 190 (307)
T ss_dssp HHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEETT
T ss_pred HHHHHHHhcC-------------CCEEEECCcC-CEEEEEEEECC
Confidence 9998875421 4899999999 79999999644
No 52
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.77 E-value=1.9e-08 Score=100.16 Aligned_cols=97 Identities=22% Similarity=0.265 Sum_probs=79.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
..-+++..|++|+++|||+|++..+.+.+|+.++++++| +|+|+||....| |+ ||.++ |++|+.+
T Consensus 106 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~g~g--g~---------Gv~~v~~~~el~~ 171 (403)
T 4dim_A 106 MCGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENLK---LPVIVKATDLQG--SK---------GIYIAKKEEEAID 171 (403)
T ss_dssp HHHCHHHHHHHHHHHTCCCCCEECCCSHHHHHHHHHTSC---SSEEEECSCC----------------CEEESSHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHhcCC---CCEEEEECCCCC--CC---------CEEEECCHHHHHH
Confidence 345788999999999999999999999999999999998 999999975433 34 68888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D 150 (394)
+++++.... .+ ..++||||++ +.|+.+.+..+
T Consensus 172 ~~~~~~~~~--------~~---~~~lvEe~i~-g~e~sv~~~~~ 203 (403)
T 4dim_A 172 GFNETMNLT--------KR---DYCIVEEFIE-GYEFGAQAFVY 203 (403)
T ss_dssp HHHHHHHHC--------SS---SCCEEEECCC-SEEEEEEEEEE
T ss_pred HHHHHHhcC--------cC---CcEEEEEccC-CcEEEEEEEEE
Confidence 999886542 11 4799999998 68999988864
No 53
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.75 E-value=3.7e-08 Score=97.28 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHH-------HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVD-------EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~e-------ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ 101 (394)
.+++..|++|+++|||+|++..+++.+ ++.++++++| +|+||||... +.|+ ||.++ |+
T Consensus 128 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~~~~g---~PvvvKP~~g--~~s~---------Gv~~v~~~ 193 (364)
T 2i87_A 128 MDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLN---YPVFVKPANL--GSSV---------GISKCNNE 193 (364)
T ss_dssp HSHHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC---SSEEEEESSC--SSCT---------TCEEESSH
T ss_pred cCHHHHHHHHHHCCCCCCCEEEEechhhcccchhHHHHHHHhcC---CCEEEEeCCC--CCCC---------CEEEECCH
Confidence 578889999999999999999998776 4667777888 9999999653 3344 68888 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 102 ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++.+++++.+.. + ..++|||+++ ++|+.+.+..|+.
T Consensus 194 ~el~~a~~~~~~~----------~---~~~lvEe~I~-G~E~~v~vl~~~~ 230 (364)
T 2i87_A 194 AELKEGIKEAFQF----------D---RKLVIEQGVN-AREIEVAVLGNDY 230 (364)
T ss_dssp HHHHHHHHHHHTT----------C---SEEEEEECCC-CEEEEEEEEESSS
T ss_pred HHHHHHHHHHHhc----------C---CeEEEEeCcc-CeEEEEEEEcCCC
Confidence 9999988876532 1 4899999999 7999999998763
No 54
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.71 E-value=7.1e-08 Score=97.01 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
-+++..|++|+++|||+|++..+++.+|+.+ .++| ||+||||... +-|+ ||.++ |++|+.+++
T Consensus 111 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~--~~~g---~P~vvKp~~g--~gs~---------Gv~~v~~~~el~~a~ 174 (425)
T 3vot_A 111 RNKNKTRSILQQNGLNTPVFHEFHTLADLEN--RKLS---YPLVVKPVNG--FSSQ---------GVVRVDDRKELEEAV 174 (425)
T ss_dssp HCHHHHHHHHHHTTCCCCCEEEESSGGGGTT--CCCC---SSEEEEESCC----------------CEEECSHHHHHHHH
T ss_pred hCHHHHHHHHHHCCCCCCceeccCcHHHHHH--hhcC---CcEEEEECCC--CCCC---------CceEechHHHHHHHH
Confidence 5788999999999999999999999888753 4677 9999999653 3344 68899 999999999
Q ss_pred HHHhccccc-ccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 109 GKMLGQILV-TKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 109 ~~~l~~~l~-~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
+++...... ... .+..-..++||||++ +.|+.+.+..+.
T Consensus 175 ~~~~~~~~~~~~~---~~~~~~~~lvEe~i~-G~e~sv~~~~~~ 214 (425)
T 3vot_A 175 RKVEAVNQRDLNR---FVHGKTGIVAEQFID-GPEFAIETLSIQ 214 (425)
T ss_dssp HHHHHHTTSSHHH---HHTTCCCEEEEECCC-SCEEEEEEEEET
T ss_pred HHHHhhhhhhhhh---hccCCCcEEEEEEec-CcEEEEEEEEeC
Confidence 887532210 000 001125799999998 789998877663
No 55
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.68 E-value=2.5e-08 Score=99.32 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHH--HHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDE--VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~ee--a~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
..+++..|++|+++|||+|++..+.+.++ +...++++| +|+||||.. ++.++ ||.++ |++|+.
T Consensus 149 ~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~lg---~PvvVKP~~--ggss~---------GV~~v~~~~eL~ 214 (373)
T 3lwb_A 149 GMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLG---LPVFVKPAR--GGSSI---------GVSRVSSWDQLP 214 (373)
T ss_dssp HHBHHHHHHHHHHTTCCBCCEEEECTTCCCCCHHHHHHHC---SCEEEEESB--CSTTT---------TCEEECSGGGHH
T ss_pred HcCHHHHHHHHHHcCcCCCCEEEEECcccchhHHHHHhcC---CCEEEEeCC--CCCCC---------CEEEeCCHHHHH
Confidence 35788999999999999999999988765 234477888 999999965 33344 68888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++++.+... ..++|||+++ ++|+.+++..|+.
T Consensus 215 ~a~~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~~~~ 247 (373)
T 3lwb_A 215 AAVARARRHD-------------PKVIVEAAIS-GRELECGVLEMPD 247 (373)
T ss_dssp HHHHHHHTTC-------------SSEEEEECCE-EEEEEEEEEECTT
T ss_pred HHHHHHHhcC-------------CCEEEeCCCC-CeEEEEEEEECCC
Confidence 9988875321 4799999999 8999999998864
No 56
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.66 E-value=7e-08 Score=91.94 Aligned_cols=93 Identities=19% Similarity=0.218 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHH--------HHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKK--------AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~--------~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~- 99 (394)
..+++..|++|+++|||+|++..+++. ++.+ ++++++ +|+|+||.... .|+ ||.++
T Consensus 94 ~~dK~~~~~~l~~~gi~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~---~p~vvKP~~g~--~~~---------gv~~v~ 158 (306)
T 1iow_A 94 SMDKLRSKLLWQGAGLPVAPWVALTRA-EFEKGLSDKQLAEISALG---LPVIVKPSREG--SSV---------GMSKVV 158 (306)
T ss_dssp HHCHHHHHHHHHHTTCCBCCEEEEEHH-HHHHCCCTHHHHHHHTTC---SSEEEEETTCC--TTT---------TCEEES
T ss_pred HcCHHHHHHHHHHCCCCCCCeEEEchh-hhhccchhhhhhHHhccC---CCEEEEeCCCC--CCC---------CEEEeC
Confidence 357889999999999999999999888 7766 677787 89999996533 343 68888
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (394)
Q Consensus 100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D 150 (394)
|++++.++++++... + ..++|||+++ +.|+.+.+..+
T Consensus 159 ~~~el~~~~~~~~~~----------~---~~~lvee~i~-g~e~~v~~~~g 195 (306)
T 1iow_A 159 AENALQDALRLAFQH----------D---EEVLIEKWLS-GPEFTVAILGE 195 (306)
T ss_dssp SGGGHHHHHHHHTTT----------C---SEEEEEECCC-CCEEEEEEETT
T ss_pred CHHHHHHHHHHHHhh----------C---CCEEEEeCcC-CEEEEEEEECC
Confidence 999999988876421 1 5899999999 89999998833
No 57
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.62 E-value=5.6e-08 Score=105.08 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHH-HHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-----CHHHH
Q 016159 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAI-QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-----KKEEV 104 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a-~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-----s~ee~ 104 (394)
++..+|++|+++|||+|++.++.+.+++.+++ +++| +|+||||... +.|+ ||.++ |.+++
T Consensus 489 DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~g---~PvVVKP~~g--~~G~---------GV~iv~~~v~~~eel 554 (757)
T 3ln7_A 489 NKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFEN---RAVVIKPKST--NYGL---------GITIFQQGVQNREDF 554 (757)
T ss_dssp HSHHHHHHHHHHTCCCCCEEEESCHHHHHHGGGGSSS---SCEEEEESSC--STTT---------TCEECSSCCCCHHHH
T ss_pred CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcC---CCEEEEeCCC--CCCC---------CeEEecCCCCCHHHH
Confidence 56688999999999999999999999997776 6787 9999999763 3355 46553 88999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
.++++.++.. + ..++||||++ ++|+.+.+..|+..
T Consensus 555 ~~al~~a~~~----------~---~~vlVEefI~-G~Ei~v~Vlggkvv 589 (757)
T 3ln7_A 555 AKALEIAFRE----------D---KEVMVEDYLV-GTEYRFFVLGDETL 589 (757)
T ss_dssp HHHHHHHHHH----------C---SSEEEEECCC-SEEEEEEEETTEEE
T ss_pred HHHHHHHHhc----------C---CcEEEEEcCC-CcEEEEEEECCEEE
Confidence 9888776532 1 4799999998 79999998866443
No 58
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.61 E-value=3e-08 Score=93.03 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=71.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
...+++..+++|+++|||+|++..+.+.+++.+++++++ +|+|+||....+ |+ ||.++ +.+++.+
T Consensus 85 ~~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~~~---~p~vvKp~~g~~--~~---------gv~~v~~~~el~~ 150 (280)
T 1uc8_A 85 ACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFG---YPVVLKPVIGSW--GR---------LLAXXXXXXXXXX 150 (280)
T ss_dssp HHHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC---SSEEEECSBCCB--CS---------HHHHHHHHHC---
T ss_pred HhCCHHHHHHHHHHcCcCCCCeEeeCCHHHHHHHHHHhC---CCEEEEECCCCC--cc---------cceecccccccch
Confidence 345788999999999999999999999999999999998 899999975332 33 67778 8888888
Q ss_pred HHHHH--hcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEEe
Q 016159 107 LAGKM--LGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLD 150 (394)
Q Consensus 107 a~~~~--l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~D 150 (394)
+++++ ++.. .-..++|||+++. +.|+.+.+..+
T Consensus 151 ~~~~~~~~~~~-----------~~~~~lvqe~i~~~~~e~~v~v~~~ 186 (280)
T 1uc8_A 151 XXXXKEVLGGF-----------QHQLFYIQEYVEKPGRDIRVFVVGE 186 (280)
T ss_dssp ---------CT-----------TTTCEEEEECCCCSSCCEEEEEETT
T ss_pred hhhhHhhhccc-----------CCCcEEEEeccCCCCceEEEEEECC
Confidence 77665 2110 1157999999986 78888887643
No 59
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.58 E-value=5.6e-08 Score=95.18 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
.+++..|++|+++|||+|++..+++.+++.. ++++ +|+||||... +.|+ ||.++ |++++.+++
T Consensus 131 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~--~~~~---~PvvvKP~~~--~~s~---------Gv~~v~~~~el~~a~ 194 (343)
T 1e4e_A 131 MDKSLTYIVAKNAGIATPAFWVINKDDRPVA--ATFT---YPVFVKPARS--GSSF---------GVKKVNSADELDYAI 194 (343)
T ss_dssp HSHHHHHHHHHHTTCBCCCEEEECTTCCCCG--GGSC---SCEEEEESSC--CTTT---------TCEEECSGGGHHHHH
T ss_pred hCHHHHHHHHHHCCCCcCCEEEEechhhhhh--hccC---CCEEEEeCCC--CCCC---------CEEEeCCHHHHHHHH
Confidence 5788999999999999999999988776532 5677 9999999753 3343 68888 999999988
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++.+.. + ..++|||+++ ++|+.+.+..|+.
T Consensus 195 ~~~~~~----------~---~~~lvEe~I~-G~E~~v~vl~~~~ 224 (343)
T 1e4e_A 195 ESARQY----------D---SKILIEQAVS-GCEVGCAVLGNSA 224 (343)
T ss_dssp HHHTTT----------C---SSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHhc----------C---CcEEEEeCcC-CeEEEEEEEeCCC
Confidence 876432 1 4799999998 8999999998864
No 60
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.51 E-value=8.9e-08 Score=93.14 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
..+++..|++|+++|||+|++..+.+.++. +. ++| +|+||||.. ++.|+ ||.++ |++++.++
T Consensus 116 ~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~--~~-~~g---~PvvvKP~~--g~~s~---------Gv~~v~~~~el~~a 178 (322)
T 2fb9_A 116 CMDKDLSKRVLAQAGVPVVPWVAVRKGEPP--VV-PFD---PPFFVKPAN--TGSSV---------GISRVERFQDLEAA 178 (322)
T ss_dssp HHCHHHHHHHHHHTTCCCCCEEEEETTSCC--CC-CSC---SCEEEEETT--CCTTT---------TCEEESSHHHHHHH
T ss_pred HcCHHHHHHHHHHCCCCCCCEEEEECchhh--hh-ccC---CCEEEEeCC--CCCCC---------CEEEECCHHHHHHH
Confidence 357889999999999999999999877642 22 566 899999965 33344 68888 99999998
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
+++.+.. + ..++|||++++.+|+.+++..|+.
T Consensus 179 ~~~~~~~----------~---~~vlvEe~I~G~~E~~v~vl~~~~ 210 (322)
T 2fb9_A 179 LALAFRY----------D---EKAVVEKALSPVRELEVGVLGNVF 210 (322)
T ss_dssp HHHHTTT----------C---SEEEEEECCSSCEEEEEEEESSSS
T ss_pred HHHHHhc----------C---CeEEEEeCCCCCeeEEEEEEeCCC
Confidence 8886532 1 489999999843999999998763
No 61
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.49 E-value=1.5e-07 Score=93.53 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHH--HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVD--EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~e--ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
..+++..|++|+++|||+|++..+.+.+ ++.+ ++++| +|+||||.. ++.|+ ||.++ |++|+.
T Consensus 147 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~-~~~lg---~PvvVKP~~--g~ss~---------Gv~~v~~~~el~ 211 (367)
T 2pvp_A 147 SYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALD-LMNFN---FPFIVKPSN--AGSSL---------GVNVVKEEKELI 211 (367)
T ss_dssp HHSHHHHHHHHHHHTCBCCCCEEECTTTGGGHHH-HCCSC---SCEEEEESS--CCTTT---------TCEEESSTTSHH
T ss_pred HcCHHHHHHHHHHCCcCCCCEEEEeCCchHHHHH-HhccC---CCEEEEECC--CCCCC---------CEEEECCHHHHH
Confidence 3578899999999999999999998877 6666 67787 999999965 33344 67888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEE
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~y 144 (394)
+++++.+.. + ..++|||++++.+|+.
T Consensus 212 ~a~~~~~~~----------~---~~vlVEe~I~G~~E~s 237 (367)
T 2pvp_A 212 YALDSAFEY----------S---KEVLIEPFIQGVKEYN 237 (367)
T ss_dssp HHHHHHTTT----------C---SCEEEEECCTTCEEEE
T ss_pred HHHHHHHhc----------C---CcEEEEeCCCCCceee
Confidence 988876531 1 4799999998439944
No 62
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=98.48 E-value=8.9e-08 Score=98.35 Aligned_cols=126 Identities=11% Similarity=0.036 Sum_probs=92.7
Q ss_pred cceeeccCCcEEEeeceeecCcchhccchhhhccCCCCCC-CHHhHhhhcCCC--eEEccCC-ceeEEecChhHHHHHHH
Q 016159 234 NPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQE-DPREVAAAKADL--NYIGLDG-EIGCMVNGAGLAMATMD 309 (394)
Q Consensus 234 NPLvv~~~G~~~alDaki~ldd~a~fR~~~~~~~~~~~~~-~~~e~~a~~~~l--~y~~l~G-~Ig~~~nGaGl~m~t~D 309 (394)
.|+++..-|+- .+.|||.++.+.++.+++ +..+.++..... ....+.| +|++++||||++.+++|
T Consensus 199 KPVV~~k~Grs-----------~~g~r~~Gvirv~~~~el~~~a~~l~~~~~~~~~qp~~~G~rvaivtn~Gg~gvlaaD 267 (480)
T 3dmy_A 199 KPTVALFLGYT-----------PAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAG 267 (480)
T ss_dssp SCEEEEETTCC-----------CSSSEETTEEEESSHHHHHHHHHHHHHHHHHHHHHCCCSCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEEeCCC-----------CcccccCCEEEECCHHHHHHHHHHHhcCccccccCCCCCCCeEEEEECCHHHHHHHHH
Confidence 47877666531 112899999888876665 555555541000 0012455 89999999999999999
Q ss_pred HHHHcCCCc-----------------------------cceeecCCCCCHHHHHHHHHHHhcCCCccEEEE-Ec--cCCC
Q 016159 310 IIKLHGGTP-----------------------------ANFLDVGGNASEGQVVEAFKILTSDEKVKAILV-NI--FGGI 357 (394)
Q Consensus 310 ~i~~~gg~~-----------------------------aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~v-ni--~ggi 357 (394)
++.. |+.. .|++|+. +++++.++++.++.||++++|++ .+ +++.
T Consensus 268 ~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~l~D~~vd~vlv~~v~~~~~~ 343 (480)
T 3dmy_A 268 LLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADLGAKPQVRVLLLDVVIGFGAT 343 (480)
T ss_dssp HHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHGGGCTTEEEEEEEEECSTTSC
T ss_pred HHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHHhcCCCCCEEEEEeecCCCCC
Confidence 9988 5532 2566665 78999999999999999999887 33 7888
Q ss_pred CCh-HHHHHHHHHHHHHc
Q 016159 358 MKC-DVIASGIVNAAKQV 374 (394)
Q Consensus 358 ~~~-d~vA~gii~a~~~~ 374 (394)
+++ +.+|+.|+++.++.
T Consensus 344 ~d~~~~~a~ai~~~~~~~ 361 (480)
T 3dmy_A 344 ADPAASLVSAWQKACAAR 361 (480)
T ss_dssp SCHHHHHHHHHHHHHHTS
T ss_pred CChHHHHHHHHHHHHHhc
Confidence 886 99999999998875
No 63
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=98.48 E-value=3.9e-07 Score=88.06 Aligned_cols=96 Identities=22% Similarity=0.221 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHH--HHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAI--QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a--~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
..+++..|++|+++|||+|++.. +.+++.++. ++++ +|+|+||....+ |+ ||.++ |++++.
T Consensus 112 ~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~---~P~vvKp~~g~g--~~---------gv~~v~~~~el~ 175 (331)
T 2pn1_A 112 CFDKYTMYEYCLRQGIAHARTYA--TMASFEEALAAGEVQ---LPVFVKPRNGSA--SI---------EVRRVETVEEVE 175 (331)
T ss_dssp HHBHHHHHHHHHHHTCCCCCEES--SHHHHHHHHHTTSSC---SCEEEEESBC---------------------------
T ss_pred hhCHHHHHHHHHHcCCCCCcEEe--cHHHhhhhhhcccCC---CCEEEEeCCCCC--CC---------CeEEeCCHHHHH
Confidence 35788999999999999999865 567776665 3676 899999975433 33 68888 888887
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe-ccCCceeee
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD-RKTAGPIII 159 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D-r~~~~Pvi~ 159 (394)
++++. ...++||||++ +.|+.+.+..| .. |.++.+
T Consensus 176 ~~~~~-----------------~~~~lvee~i~-G~e~~v~~~~d~~~-G~~~~~ 211 (331)
T 2pn1_A 176 QLFSK-----------------NTDLIVQELLV-GQELGVDAYVDLIS-GKVTSI 211 (331)
T ss_dssp ------------------------CEEEEECCC-SEEEEEEEEECTTT-CCEEEE
T ss_pred HHHHh-----------------CCCeEEEecCC-CcEEEEEEEEecCC-CeEEEE
Confidence 65432 13799999999 69999999998 44 334433
No 64
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.45 E-value=2.1e-07 Score=92.08 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=70.2
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
+..-+++..|++|+++|||+|++..+++.++ +++++| +|+|+||.... ..|+ ||.++ |++++.
T Consensus 96 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~---~~~~~~---~P~vvKp~~~~-y~g~---------Gv~~v~~~~el~ 159 (380)
T 3ax6_A 96 EIIQDKFVQKEFLKKNGIPVPEYKLVKDLES---DVREFG---FPVVQKARKGG-YDGR---------GVFIIKNEKDLE 159 (380)
T ss_dssp HHHHSHHHHHHHHHHTTCCCCCEEECSSHHH---HHHTTC---SSEEEEESCCC---------------EEEECSGGGGG
T ss_pred HHhcCHHHHHHHHHHcCCCCCCeEEeCCHHH---HHHhcC---CCEEEEecCCC-CCCC---------CeEEECCHHHHH
Confidence 3446788999999999999999999999887 566787 99999997533 0344 68888 887754
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~ 152 (394)
++++ ..++|||+++.+.|+.+.+..|..
T Consensus 160 ~~~~-------------------~~~lvEe~i~~g~e~sv~~~~~~~ 187 (380)
T 3ax6_A 160 NAIK-------------------GETYLEEFVEIEKELAVMVARNEK 187 (380)
T ss_dssp GCCC-------------------SSEEEEECCCEEEEEEEEEEECSS
T ss_pred HHhc-------------------CCEEEEeccCCCeeEEEEEEECCC
Confidence 3211 479999999878999999998865
No 65
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.20 E-value=3e-06 Score=84.09 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=63.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
..-+....|++|+++|||+|++ +++++|+ + +|+||||....+ || ||.++ |++|+.+
T Consensus 121 ~e~~k~~~k~~l~~~GIptp~~--~~~~~e~-------~---~PvVVK~~~~a~--Gk---------Gv~v~~s~ee~~~ 177 (361)
T 2r7k_A 121 WESERSLEGKLLREAGLRVPKK--YESPEDI-------D---GTVIVKFPGARG--GR---------GYFIASSTEEFYK 177 (361)
T ss_dssp TTTCHHHHHHHHHHTTCCCCCE--ESSGGGC-------C---SCEEEECSCCCC--------------EEEESSHHHHHH
T ss_pred HhhhHHHHHHHHHHcCcCCCCE--eCCHHHc-------C---CCEEEeeCCCCC--CC---------CEEEECCHHHHHH
Confidence 3455667889999999999975 6777664 4 899999987654 55 69999 9999999
Q ss_pred HHHHHhcccccccccCCCCcc-cceEEEEeeeCCCeeEE
Q 016159 107 LAGKMLGQILVTKQTGPQGKI-VSKVYLCEKLSLVNEMY 144 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~-v~~vlVee~v~~~~E~y 144 (394)
++++++.... .|.. ...++||||++ +.|+.
T Consensus 178 a~~~~~~~~~-------~~~~~~~~viIEEfl~-G~e~s 208 (361)
T 2r7k_A 178 KAEDLKKRGI-------LTDEDIANAHIEEYVV-GTNFC 208 (361)
T ss_dssp HHHHHHHTTS-------CCHHHHHHCEEEECCC-SEEEE
T ss_pred HHHHHHhccc-------cccCCCCeEEEEeccc-eEEee
Confidence 9999875421 1211 14699999998 78875
No 66
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.05 E-value=1.4e-05 Score=76.88 Aligned_cols=91 Identities=21% Similarity=0.238 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
..+++..|++|+++|||+|++ +.++++ ++ +|+||||....+ |+ ||.++ |++++.++
T Consensus 98 ~~dK~~~~~~l~~~gip~p~~--~~~~~~-------l~---~P~vvKP~~g~~--s~---------Gv~~v~~~~el~~~ 154 (334)
T 2r85_A 98 ESDRNLERKWLKKAGIRVPEV--YEDPDD-------IE---KPVIVKPHGAKG--GK---------GYFLAKDPEDFWRK 154 (334)
T ss_dssp HHSHHHHHHHHHHTTCCCCCB--CSCGGG-------CC---SCEEEEECC------T---------TCEEESSHHHHHHH
T ss_pred HHhHHHHHHHHHHcCCCCCCc--cCChHH-------cC---CCEEEEeCCCCC--CC---------CEEEECCHHHHHHH
Confidence 356788899999999999998 566553 55 899999975333 44 68888 99999998
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
++++..... .+ ....++||||++ +.|+.+.+..+.
T Consensus 155 ~~~~~~~~~-------~~-~~~~~lvee~i~-G~e~~~~~~~~~ 189 (334)
T 2r85_A 155 AEKFLGIKR-------KE-DLKNIQIQEYVL-GVPVYPHYFYSK 189 (334)
T ss_dssp HHHHHCCCS-------GG-GCCSEEEEECCC-CEEEEEEEEEET
T ss_pred HHHHHhhcc-------cC-CCCcEEEEeccC-CceeEEEEeecC
Confidence 888764310 00 114799999998 788876655553
No 67
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.98 E-value=8.3e-06 Score=79.99 Aligned_cols=78 Identities=12% Similarity=0.232 Sum_probs=55.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
..-+++..|++|+++|||+|++.. +| ||+|+||... +-|+ ||+++ |.+++..
T Consensus 100 ~~~dK~~~k~~l~~~gip~~~~~~-------------ig---~P~vvKp~~g--~g~~---------gv~~v~~~~~~~~ 152 (363)
T 4ffl_A 100 ISRDKKKSKDYFKSIGVPTPQDRP-------------SK---PPYFVKPPCE--SSSV---------GARIIYDDKDLEG 152 (363)
T ss_dssp HHTSHHHHHHHHHHTTCCCCCBSC-------------SS---SCEEEECSSC--CTTT---------TCEEEC------C
T ss_pred HhhCHHHHHHHHHhcCCCCCCcee-------------cC---CCEEEEECCC--CCCc---------CeEEeccHHHhhh
Confidence 345889999999999999998753 56 9999999643 2233 67787 7766421
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
....+++|||++ +.|+.+.+..|...
T Consensus 153 --------------------~~~~~~~ee~i~-g~e~sv~~~~d~~~ 178 (363)
T 4ffl_A 153 --------------------LEPDTLVEEYVE-GEVVSLEVVGDGSH 178 (363)
T ss_dssp --------------------CCTTCEEEECCC-SEEEEEEEEEESSC
T ss_pred --------------------hccchhhhhhcc-CcEEEEEEEEECCe
Confidence 014678999998 88999999998653
No 68
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=97.91 E-value=1.7e-05 Score=76.33 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=68.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (394)
Q Consensus 28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~ 106 (394)
...+++..+++|+++|||+|++.++.+.+++.+++++.+ ..+|+|+||..-.|+.+ .-||.++ +.+++.+
T Consensus 95 ~~~dK~~~~~~l~~~gi~~P~~~~~~~~~~~~~~~~~~~-~~~P~vvKP~~g~g~~~--------s~gv~~v~~~~~l~~ 165 (324)
T 1z2n_X 95 MMSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQ-LILPFIVKPENAQGTFN--------AHQMKIVLEQEGIDD 165 (324)
T ss_dssp HHTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTTC-SCSSEEEEESBCSSSSG--------GGEEEEECSGGGGTT
T ss_pred HHhCHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHHcC-CCCCEEEeeCCCCCCcc--------ceeeEEEeCHHHHhh
Confidence 446788899999999999999999999999988887743 12899999976333211 1368888 7665321
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEEe
Q 016159 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLD 150 (394)
Q Consensus 107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~D 150 (394)
. . ..++||||++. +.|+.+.+..+
T Consensus 166 --------~---------~---~~~lvqe~i~~~g~~~~v~v~g~ 190 (324)
T 1z2n_X 166 --------I---------H---FPCLCQHYINHNNKIVKVFCIGN 190 (324)
T ss_dssp --------C---------C---SSEEEEECCCCTTCEEEEEEETT
T ss_pred --------c---------C---CCEEEEEccCCCCcEEEEEEECC
Confidence 0 1 47999999975 67888877543
No 69
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=97.36 E-value=0.00022 Score=69.25 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCC---CCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 33 YQGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 33 ~~aK~lL~~~GI---pvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
.....+|++.|+ |.|+.....+..+ +.+.+| +|+|+|+-. |+.|+ ||.++ |++++++..
T Consensus 119 ~~~~~~l~~~gi~~~P~~~~~~~~~~~~---~~~~~g---~PvVvK~~~--Gs~G~---------GV~lv~~~~~~~~~~ 181 (309)
T 1i7n_A 119 AQMVAIFKTLGGEKFPLIEQTYYPNHRE---MLTLPT---FPVVVKIGH--AHSGM---------GKVKVENHYDFQDIA 181 (309)
T ss_dssp HHHHHHHHHHCTTTSCBCCCEEESSGGG---GSSCCC---SSEEEEESS--CSTTT---------TEEEECSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCEEeeCChhh---hhhccC---CCEEEEeCC--CCcee---------CeEEECCHHHHHHHH
Confidence 455677888998 8656555555443 344566 899999953 55565 68888 999988777
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
+.+.... ..+++|||++.++.+.+.+.-++
T Consensus 182 ~~~~~~~-------------~~~~vQefI~~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 182 SVVALTQ-------------TYATAEPFIDAKYDIRVQKIGNN 211 (309)
T ss_dssp HHHHHHT-------------CCEEEEECCCEEEEEEEEEETTE
T ss_pred HHHhccC-------------CeEEEEeecCCCceEEEEEECCE
Confidence 6543211 46889999997888888887554
No 70
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=97.13 E-value=0.00039 Score=68.41 Aligned_cols=94 Identities=10% Similarity=0.023 Sum_probs=64.7
Q ss_pred cCCCH----HHHHHHHHHcCC---CCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159 28 LNIHE----YQGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (394)
Q Consensus 28 m~L~E----~~aK~lL~~~GI---pvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~- 99 (394)
..-++ .....+|++.|+ |.|+.....+..+ +.+.+| +|+|+|+-. |+.|+ ||.++
T Consensus 127 ~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~~~~---~~~~~g---~PvVvK~~~--Gs~G~---------GV~lve 189 (344)
T 2p0a_A 127 NFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKP---MVTAPH---FPVVVKLGH--AHAGM---------GKIKVE 189 (344)
T ss_dssp HTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESSSTT---CCCCSS---SSEEEEESS--CCTTT---------TEEEEC
T ss_pred hhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCchhh---hhhccC---CCEEEEeCC--CCcee---------CeEEEC
Confidence 33566 556778888898 8655554554433 344566 899999954 55565 68888
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
|.+++++..+.+... + ..+++|||++.++.+.+.+.-++
T Consensus 190 ~~~~~~~~~~~~~~~----------~---~~~~vQefI~~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 190 NQLDFQDITSVVAMA----------K---TYATTEAFIDSKYDIRIQKIGSN 228 (344)
T ss_dssp SHHHHHHHHHHHHHH----------T---CCEEEEECCCEEEEEEEEEETTE
T ss_pred CHHHHHHHHHHHhcc----------C---CeEEEEeccCCCccEEEEEECCE
Confidence 999988777654321 1 36889999997888888887554
No 71
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=97.09 E-value=0.00047 Score=65.20 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC--CHHHHHHH
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDL 107 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~--s~ee~~~a 107 (394)
.+++..+++|+ |+|++.++.+++++.++++++| |+|+||.. |+.|+ ||.+. +.+++.++
T Consensus 123 ~dK~~~~~~l~----~~P~t~~~~~~~~~~~~~~~~~----p~vvKP~~--g~~g~---------Gv~~v~~~~~~l~~~ 183 (316)
T 1gsa_A 123 NEKLFTAWFSD----LTPETLVTRNKAQLKAFWEKHS----DIILKPLD--GMGGA---------SIFRVKEGDPNLGVI 183 (316)
T ss_dssp CTTGGGGGGTT----TSCCEEEESCHHHHHHHHHHHS----SEEEECSS--CCTTT---------TCEEECTTCTTHHHH
T ss_pred hhHHHHHhhhh----cCCCeEEeCCHHHHHHHHHHcC----CEEEEECC--CCCcc---------cEEEecCChHHHHHH
Confidence 45555666666 9999999999999999888884 99999965 33344 45554 67777776
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeeeCC--CeeEEEEEE
Q 016159 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIM 148 (394)
Q Consensus 108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~--~~E~ylgi~ 148 (394)
++.+... + -..++|||+++. +.|+.+.+.
T Consensus 184 ~~~~~~~----------~--~~~~lvqe~i~~~~~~~~~v~~~ 214 (316)
T 1gsa_A 184 AETLTEH----------G--TRYCMAQNYLPAIKDGDKRVLVV 214 (316)
T ss_dssp HHHHTTT----------T--TSCEEEEECCGGGGGCEEEEEEE
T ss_pred HHHHHhc----------C--CceEEEecccCCCCCCCEEEEEE
Confidence 6654211 1 147999999986 577766654
No 72
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=97.01 E-value=0.00045 Score=68.00 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHc-------CCCCCCceeeCC--HHHHHHHHH--HhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159 30 IHEYQGAELMAKY-------GINVPKGLAVAS--VDEVKKAIQ--DAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (394)
Q Consensus 30 L~E~~aK~lL~~~-------GIpvp~~~~~~s--~eea~~~a~--~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l 98 (394)
.+....-++|++. |||+|++.++.+ ++++.+..+ .+| +|+|+||..-.|..+ -||.+
T Consensus 115 ~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg---~P~VvKP~~g~Gs~s---------~~v~~ 182 (346)
T 2q7d_A 115 LDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLT---FPFICKTRVAHGTNS---------HEMAI 182 (346)
T ss_dssp TBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCC---SSEEEECSBCSSTTC---------CEEEE
T ss_pred hhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCC---CCEEEEecCCCccee---------eeeEE
Confidence 4677777788886 999999999976 356666654 355 899999965333322 36888
Q ss_pred C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEEec
Q 016159 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDR 151 (394)
Q Consensus 99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~Dr 151 (394)
+ +.+++.. + + ..++||||+++ +.|+-+.+.-|+
T Consensus 183 v~~~~~l~~---------~--------~---~~~lvQefI~~~G~dirv~VvG~~ 217 (346)
T 2q7d_A 183 VFNQEGLNA---------I--------Q---PPCVVQNFINHNAVLYKVFVVGES 217 (346)
T ss_dssp ECSGGGTTC----------------------CCEEEEECCCCTTEEEEEEEETTE
T ss_pred ecCHHHHHh---------c--------C---CCEEEEEeeCCCCeEEEEEEECCE
Confidence 8 8766542 1 1 36999999974 789999887654
No 73
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=96.92 E-value=0.00087 Score=67.49 Aligned_cols=89 Identities=15% Similarity=0.083 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCC---CCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159 33 YQGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (394)
Q Consensus 33 ~~aK~lL~~~GI---pvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~ 108 (394)
...-.+|++.|+ |.++.....+..+ +.+.+| +|+|+|+-. |+.|+ ||.++ |.+++++..
T Consensus 231 ~~~l~ll~~~gi~~iP~t~~t~~~~~~~---~i~~~g---~PvVvKp~~--GS~G~---------GV~lve~~~~l~~ii 293 (422)
T 1pk8_A 231 AQMVRLHKKLGTEEFPLIDQTFYPNHKE---MLSSTT---YPVVVKMGH--AHSGM---------GKVKVDNQHDFQDIA 293 (422)
T ss_dssp HHHHHHHHHHCTTTSCBCCCEEESSGGG---CCCCSS---SSEEEEESS--CCTTT---------TEEEECSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCceEecCchhh---hhhccC---CCEEEEeCC--CCcee---------CeEEeCCHHHHHHHH
Confidence 345667888888 8555544444333 334566 899999953 55565 68888 999988877
Q ss_pred HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
+.+.... .-+++|||++.++.+.+.+.-++
T Consensus 294 ~~~~~~~-------------~~~~vQEfI~~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 294 SVVALTK-------------TYATAEPFIDAKYDVRVQKIGQN 323 (422)
T ss_dssp HHHHHHT-------------SCEEEEECCCEEEEEEEEEETTE
T ss_pred HHHhccC-------------ceEEEEeecCCCceEEEEEECCE
Confidence 6543221 46899999997888888887554
No 74
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=96.87 E-value=0.00099 Score=64.04 Aligned_cols=72 Identities=8% Similarity=0.135 Sum_probs=53.6
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (394)
Q Consensus 27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~ 105 (394)
+..-+++..|++|++ |||+|++.+ .+++ +|+|+||.. |+.|+ ||.++ +
T Consensus 106 ~~~~dK~~~~~~l~~-Gip~p~~~~-----------~~~~---~P~vvKP~~--g~gs~---------Gv~~v~~----- 154 (305)
T 3df7_A 106 AVTSDKWELYKKLRG-EVQVPQTSL-----------RPLD---CKFIIKPRT--ACAGE---------GIGFSDE----- 154 (305)
T ss_dssp HHHTSHHHHHHHHTT-TSCCCCEES-----------SCCS---SSEEEEESS--CC-------------CBCCSS-----
T ss_pred HHhcCHHHHHHHHHh-CCCCCCEec-----------ccCC---CCEEEEeCC--CCCCC---------CEEEEec-----
Confidence 344688999999999 999999986 2466 899999965 33333 56666 5
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (394)
Q Consensus 106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr 151 (394)
. . ..++||||++ +.|+.+.+..+.
T Consensus 155 ---------~---------~---~~~lvEe~I~-G~e~sv~v~~g~ 178 (305)
T 3df7_A 155 ---------V---------P---DGHIAQEFIE-GINLSVSLAVGE 178 (305)
T ss_dssp ---------C---------C---TTEEEEECCC-SEEEEEEEEESS
T ss_pred ---------C---------C---CCEEEEeccC-CcEEEEEEEeCC
Confidence 1 1 4799999999 899999998753
No 75
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=96.81 E-value=0.00014 Score=70.96 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHH
Q 016159 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKM 111 (394)
Q Consensus 33 ~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~ 111 (394)
..-|++|+++|||+|++.- ++|+ +++ +|+||||.... .|| |+.++ | +|+.++++.+
T Consensus 100 ~~~~~~l~~~Gip~P~~~~---~ee~-----~i~---~PviVKp~~g~--ggk---------G~~~v~~-eel~~~~~~~ 156 (320)
T 2pbz_A 100 ELQDKALEGAGIPRVEVVE---PEDA-----KPD---ELYFVRIEGPR--GGS---------GHFIVEG-SELEERLSTL 156 (320)
T ss_dssp HHHHHHHHHHTCCBCCBCC---SCCC-----CSS---CCEEEECC-----------------------C-EECSCCCC--
T ss_pred HHHHHHHHHCCcCCCCeeC---HhHc-----CcC---CcEEEEECCCC--CCC---------CEEEECh-HHHHHHHHhc
Confidence 4446899999999999872 4443 467 99999996533 355 67788 8 7765432221
Q ss_pred hcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159 112 LGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (394)
Q Consensus 112 l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~ 153 (394)
+ ..++||||++ +.|++..+..+...
T Consensus 157 -------------~---~~~IiEEfI~-g~~~~~~~f~~~~~ 181 (320)
T 2pbz_A 157 -------------E---EPYRVERFIP-GVYLYVHFFYSPIL 181 (320)
T ss_dssp ------------------CCEEEECCC-SCEEEEEEEEETTT
T ss_pred -------------C---CCEEEEeeec-eEecceeEEecccc
Confidence 1 3689999998 67776445555443
No 76
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=92.89 E-value=0.5 Score=48.28 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=69.5
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCC-----CHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHH
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNA-----SEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a-----~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~ 365 (394)
+|+||+++--|+++...+|.+...|.-...|+-+|+.+ ..-.+...++.+..||++++|++.+=+ ..+.+++
T Consensus 112 ~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~---~~e~~~~ 188 (480)
T 3dmy_A 112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKP---PAEAVRL 188 (480)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESC---CCHHHHH
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEec---CCcHHHH
Confidence 69999999999999999999999999899999999994 557788899999999999999976654 2456777
Q ss_pred HHHHHHHHc
Q 016159 366 GIVNAAKQV 374 (394)
Q Consensus 366 gii~a~~~~ 374 (394)
.++++.++.
T Consensus 189 ~f~~~ar~~ 197 (480)
T 3dmy_A 189 KIVNAMKAT 197 (480)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 788887753
No 77
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=92.65 E-value=0.36 Score=47.06 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=67.4
Q ss_pred ccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCC--CCHHHHHHHHHHHhcCCCccEEEEE-ccCCCCChHHHHH
Q 016159 289 GLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN--ASEGQVVEAFKILTSDEKVKAILVN-IFGGIMKCDVIAS 365 (394)
Q Consensus 289 ~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~--a~~~~~~~a~~~~l~~~~v~~i~vn-i~ggi~~~d~vA~ 365 (394)
..+|+||+++--|+++...+|.+...|.-..-|+-+||+ ++ -.+...++.+..||++++|++. =.+|+.. +
T Consensus 166 ~~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d-~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e-----~ 239 (334)
T 3mwd_B 166 YRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPG-STFMDHVLRYQDTPGVKMIVVLGEIGGTEE-----Y 239 (334)
T ss_dssp TSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCS-SCHHHHHHHHHTCTTCCEEEEEEESSSSHH-----H
T ss_pred CCCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCC-CCHHHHHHHHhcCCCCCEEEEEEecCChHH-----H
Confidence 356999999999999999999999999888899999999 55 5577899999999999999975 1355532 4
Q ss_pred HHHHHHHHcCCcc
Q 016159 366 GIVNAAKQVSALD 378 (394)
Q Consensus 366 gii~a~~~~~~~~ 378 (394)
..++++++...++
T Consensus 240 ~~~~~~r~~~~~K 252 (334)
T 3mwd_B 240 KICRGIKEGRLTK 252 (334)
T ss_dssp HHHHHHHTTSCCS
T ss_pred HHHHHHHhhcCCC
Confidence 5667777744333
No 78
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=90.45 E-value=1.1 Score=42.28 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=62.9
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++..-.+.. -...+.+..+|.++-.-.-..++.+.+.-+++++-++ +.|++++|| ...|.+|
T Consensus 182 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nd~~A 254 (338)
T 3dbi_A 182 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-------ASNDDMA 254 (338)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEE-------ESSHHHH
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-------ECChHHH
Confidence 4888886543322 2356778888765543333456677777777776665 578999999 4558999
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
-|+++++++.++++ +.+|-++.+
T Consensus 255 ~g~~~al~~~G~~vP~di~vvg~D~~~~ 282 (338)
T 3dbi_A 255 IGAMKALHERGVAVPEQVSVIGFDDIAI 282 (338)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEESCCTT
T ss_pred HHHHHHHHHcCCCCCCCeEEEEECChHH
Confidence 99999999999874 777766544
No 79
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=90.20 E-value=0.81 Score=43.83 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=67.2
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii 368 (394)
.+|+||+++--|+++...+|.+...|.-..-|+-+||++. .-.+...++.+..||++++|++.+=++ -+..+-++..+
T Consensus 151 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~-g~~e~~~~~f~ 229 (305)
T 2fp4_A 151 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIG-GNAEENAAEFL 229 (305)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESS-SSHHHHHHHHH
T ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecC-CchhhHHHHHH
Confidence 4699999999999999999999999988999999999984 467888999999999999999755433 23334456666
Q ss_pred HHHHH
Q 016159 369 NAAKQ 373 (394)
Q Consensus 369 ~a~~~ 373 (394)
++.++
T Consensus 230 ~~~~~ 234 (305)
T 2fp4_A 230 KQHNS 234 (305)
T ss_dssp HHHSC
T ss_pred HHHHH
Confidence 66554
No 80
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=90.13 E-value=0.56 Score=44.53 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=65.0
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii 368 (394)
.+|+||+++--|+++...+|.+...|.-..-|+-+|+++. .-.+...++.+..||++++|++.+=++ .+....+...+
T Consensus 143 ~~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~-~~~~~~~~~~~ 221 (288)
T 1oi7_A 143 KRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIG-GSDEEEAAAWV 221 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSS-SSHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHH
Confidence 4599999999999999999999999988999999999995 356788999999999999999765443 33444444444
Q ss_pred HH
Q 016159 369 NA 370 (394)
Q Consensus 369 ~a 370 (394)
++
T Consensus 222 ~~ 223 (288)
T 1oi7_A 222 KD 223 (288)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 81
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=89.59 E-value=0.74 Score=43.87 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=64.2
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii 368 (394)
.+|+||+++--|+++...+|.+...|.-..-|+-+|+++. .-.+...++.+..||++++|++.+=+ +.+....+...+
T Consensus 150 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~-~~~~~~~~~~~~ 228 (297)
T 2yv2_A 150 KEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEI-GGDMEERAAEMI 228 (297)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECS-SSSHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEee-CCCHHHHHHHHH
Confidence 4699999999999999999999999988899999999995 25678899999999999999986553 234444444444
Q ss_pred H
Q 016159 369 N 369 (394)
Q Consensus 369 ~ 369 (394)
+
T Consensus 229 ~ 229 (297)
T 2yv2_A 229 K 229 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 82
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=89.02 E-value=0.7 Score=44.00 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=58.6
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccC
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFG 355 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~g 355 (394)
.+|+||+++--|+++...+|.+...|.-..-|+-+|+++. .-.+...++.+..||++++|++.+=+
T Consensus 149 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~ 215 (294)
T 2yv1_A 149 KEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEI 215 (294)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEES
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence 4599999999999999999999999988999999999995 25677899999999999999975544
No 83
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=88.94 E-value=1.4 Score=41.62 Aligned_cols=80 Identities=14% Similarity=0.234 Sum_probs=64.9
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii 368 (394)
.+|+||+++--|+++...+|.+...|.-..-++-+||++. .-.+...++.+..||++++|++.+=++ -+....++..+
T Consensus 143 ~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~-~~~~~~~~~~~ 221 (288)
T 2nu8_A 143 KPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIG-GSAEEEAAAYI 221 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESS-SSHHHHHHHHH
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHH
Confidence 4699999999999999999999999988889999999985 356778999999999999999755433 34445555556
Q ss_pred HH
Q 016159 369 NA 370 (394)
Q Consensus 369 ~a 370 (394)
++
T Consensus 222 ~~ 223 (288)
T 2nu8_A 222 KE 223 (288)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 84
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=87.80 E-value=1.4 Score=40.60 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=60.4
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|+++..-.+.. -...+++..+|..+..-.-.-++.+.+.-+++++-++ +.|++++|| ...|.+|
T Consensus 127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nd~~A 199 (294)
T 3qk7_A 127 QRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAII-------TDCNMLG 199 (294)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEE-------ESSHHHH
T ss_pred ceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEE-------ECCHHHH
Confidence 3888886544322 2245677777765432222335566777666666555 468999999 4568999
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
-|+++++++.++++ +.+|-++.++
T Consensus 200 ~g~~~al~~~G~~vP~di~vig~D~~~~~ 228 (294)
T 3qk7_A 200 DGVASALDKAGLLGGEGISLIAYDGLPDD 228 (294)
T ss_dssp HHHHHHHHHTTCSSTTSCEEEEETCSCTT
T ss_pred HHHHHHHHHcCCCCCCceEEEeecCccHH
Confidence 99999999999874 7777766543
No 85
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=87.38 E-value=4.4 Score=36.39 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=58.4
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|+++..-.+.. -...+.+..+|.++....-.-++.+.+..+++++-+++ .|++++|| ...|.+|
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a 193 (275)
T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALV-------CSHEEIA 193 (275)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEE-------ESSHHHH
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEE-------EcCcHHH
Confidence 4888886543322 12457777787654332223455677777776665554 57899998 3468899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecce
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
.|+++++++.+.++ +.+|-++.
T Consensus 194 ~g~~~al~~~g~~vP~di~vvg~d~~~ 220 (275)
T 3d8u_A 194 IGALFECHRRVLKVPTDIAIICLEGSS 220 (275)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEESSCCH
T ss_pred HHHHHHHHHcCCCCCCceEEEecCCch
Confidence 99999999998763 67776553
No 86
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=87.33 E-value=2.5 Score=39.76 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=59.4
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|+++..-.+.. -...+++..+|.....-.-.-|+-+.+.-+++++-+++ .|++++|| ...|.+|
T Consensus 178 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nd~~A 250 (340)
T 1qpz_A 178 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF-------CGGDIMA 250 (340)
T ss_dssp CCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE-------ESSHHHH
T ss_pred CEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEE-------ECCHHHH
Confidence 4888885433321 23567788777653322223355577777777666555 57899999 3458899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
-|+++++++.++++ +.+|-++.+
T Consensus 251 ~g~~~al~~~G~~vP~disvig~D~~~~ 278 (340)
T 1qpz_A 251 MGALCAADEMGLRVPQDVSLIGYDNVRN 278 (340)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECCTT
T ss_pred HHHHHHHHHcCCCCCCCeEEEeECCchH
Confidence 99999999999864 777776544
No 87
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=86.98 E-value=2.3 Score=38.61 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=57.8
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++..-.+.. -...+.+..+|.+.....-+-++.+.+..+++++-+++ .|++++|| ...|.+|
T Consensus 140 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a 212 (296)
T 3brq_A 140 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-------ASNDDMA 212 (296)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEE-------ESSHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEE-------ECChHHH
Confidence 5888886543321 12457777777654322122355677777777666654 58899999 3358899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
.|+++++++.++++ +.+|-++.+
T Consensus 213 ~g~~~al~~~g~~vP~di~vvg~d~~~~ 240 (296)
T 3brq_A 213 IGAMKALHERGVAVPEQVSVIGFDDIAI 240 (296)
T ss_dssp HHHHHHHHHHTCCTTTTCEEEEESCCTT
T ss_pred HHHHHHHHHcCCCCCCceEEEeecCchh
Confidence 99999999998763 778777654
No 88
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=86.82 E-value=3.4 Score=37.78 Aligned_cols=89 Identities=21% Similarity=0.192 Sum_probs=59.9
Q ss_pred CceeEEecCh-hHHH------HHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGA-GLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGa-Gl~m------~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~v 363 (394)
++|+++..-. +... ...+.+..+|.+...-.-+-++.+.+..+++++-+++ .|++++|| ...|.+
T Consensus 134 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~ 206 (289)
T 2fep_A 134 TDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-------SATDEM 206 (289)
T ss_dssp SSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-------ESSHHH
T ss_pred CeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEE-------ECCHHH
Confidence 5899887543 3221 3567788887654321112345567777777766655 57899999 346889
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecceE
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
|.|+++++++.++++ +.+|-++..
T Consensus 207 A~g~~~al~~~G~~vP~di~vvg~D~~~~ 235 (289)
T 2fep_A 207 ALGIIHAAQDQGLSIPEDLDIIGFDNTRL 235 (289)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEEECCGG
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEECChHH
Confidence 999999999998763 777776654
No 89
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=86.73 E-value=2.9 Score=38.21 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=59.6
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCcc-ceeecCCCCCHHHHHHHHHHHhc--CC-CccEEEEEccCCCCChH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPA-NFLDVGGNASEGQVVEAFKILTS--DE-KVKAILVNIFGGIMKCD 361 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~a-NflD~gG~a~~~~~~~a~~~~l~--~~-~v~~i~vni~ggi~~~d 361 (394)
++|+++..-.+.. -...+.+..+|.+.. .++- -++.+.+..+++++-+++ .| ++++|| ...|
T Consensus 126 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-------~~~d 197 (287)
T 3bbl_A 126 RRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYIL-RGEGTFEVGRAMTLHLLDLSPERRPTAIM-------TLND 197 (287)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEE-ECCSSHHHHHHHHHHHHTSCTTTSCSEEE-------ESSH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEE-eCCCCHHHHHHHHHHHHhhCCCCCCcEEE-------ECCc
Confidence 5888886543321 124577777776543 2222 345567777777666655 57 899999 3458
Q ss_pred HHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 362 VIASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 362 ~vA~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
.+|.|+++++++.++++ +.+|-++.++
T Consensus 198 ~~a~g~~~al~~~G~~vP~di~vig~d~~~~~ 229 (287)
T 3bbl_A 198 TMAIGAMAAARERGLTIGTDLAIIGFDDAPMV 229 (287)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEESCCTTG
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEECCchHh
Confidence 89999999999999863 7788776543
No 90
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=86.59 E-value=2.9 Score=37.98 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=57.0
Q ss_pred CceeEEecChhH------HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGL------AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl------~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++..-.+. --...+.+..+|.+...-.-.-++-+.+..+++++-+++ .|++++|| ...|.+|
T Consensus 127 ~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a 199 (289)
T 1dbq_A 127 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF-------CGGDIMA 199 (289)
T ss_dssp CSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE-------ESCHHHH
T ss_pred CeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEE-------ECCcHHH
Confidence 477777543221 123567787787654322222345566666666665554 58899998 3358899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
.|+++++++.++++ +.+|-++.+
T Consensus 200 ~g~~~al~~~G~~vP~di~vvg~d~~~~ 227 (289)
T 1dbq_A 200 MGALCAADEMGLRVPQDVSLIGYDNVRN 227 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECCTT
T ss_pred HHHHHHHHHcCCCCCCceEEEeeCCchH
Confidence 99999999998763 777776654
No 91
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=85.35 E-value=5.3 Score=36.17 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=59.0
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|+++....+.. -...+.+..+|.....-.-.-++.+.+..+++++-++ +.|++++|| ...|.+|
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a 204 (292)
T 3k4h_A 132 KQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-------ATDDLIG 204 (292)
T ss_dssp CCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-------ESSHHHH
T ss_pred ceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-------EcChHHH
Confidence 3888887554432 2345778777765432222235566777676666555 468999999 4468899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecce
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
.|+++++++.++++ +.+|-++.
T Consensus 205 ~g~~~al~~~g~~vP~di~vig~d~~~ 231 (292)
T 3k4h_A 205 LGVLSALSKKGFVVPKDVSIVSFNNAL 231 (292)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred HHHHHHHHHhCCCCCCeEEEEEecCcc
Confidence 99999999999863 67776553
No 92
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=85.17 E-value=3.4 Score=37.74 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=58.0
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCcc-ceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPA-NFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~a-NflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~v 363 (394)
++|+++..-.+.. -...+.+..+|.+.. .++- -++.+.+..+++++-++ +.|++++|| ...|.+
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~ 200 (290)
T 2rgy_A 129 RKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLI-ESDFSPEGGYAATCQLLESKAPFTGLF-------CANDTM 200 (290)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEE-ECCSSHHHHHHHHHHHHHHTCCCSEEE-------ESSHHH
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEE-ecCCChhHHHHHHHHHHhCCCCCcEEE-------ECCcHH
Confidence 4898886543321 124567777775432 2222 24556666666665444 568899999 346889
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecceE
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
|.|+++++++.++++ +.+|-++.+
T Consensus 201 A~g~~~al~~~G~~vP~di~vvg~D~~~~ 229 (290)
T 2rgy_A 201 AVSALARFQQLGISVPGDVSVIGYDDDYS 229 (290)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEEECCTT
T ss_pred HHHHHHHHHHcCCCCCCceEEEEeCCchH
Confidence 999999999999763 777776544
No 93
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=84.06 E-value=1.7 Score=43.97 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=56.9
Q ss_pred CceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159 292 GEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (394)
Q Consensus 292 G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ 354 (394)
|+||+++--|+++...+|.+...|.-...|+-+|+.++ -.+...++.+..||++++|++.+=
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~-~~~~d~l~~~~~D~~t~~I~l~~E 211 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMAD-VDFAELMEYLADTEEDKAIALYIE 211 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCS-SCHHHHHHHHTTCSSCCEEEEEES
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCC-CCHHHHHHHHhcCCCCCEEEEEEe
Confidence 99999999999999999999999998899999999996 577889999999999999997543
No 94
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=83.79 E-value=4.2 Score=38.01 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=59.6
Q ss_pred CceeEEecCh-hHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGA-GLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGa-Gl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~v 363 (394)
.+|+++..-. +.. -...+++..+|.+.....-.-++.+.+.-+++++-++ +.|++++|| ...|.+
T Consensus 178 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nd~~ 250 (332)
T 2hsg_A 178 KNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-------VGTDEM 250 (332)
T ss_dssp SCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-------ESSHHH
T ss_pred CEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-------ECChHH
Confidence 4888886543 322 2356788878765432111234556677666666555 467899999 346889
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecceE
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
|-|+++++++.++++ +.+|-++.+
T Consensus 251 A~g~~~al~~~G~~vP~disvvg~D~~~~ 279 (332)
T 2hsg_A 251 ALGVIHGAQDRGLNVPNDLEIIGFDNTRL 279 (332)
T ss_dssp HHHHHHHHHHTTCCHHHHCEEEEESCCGG
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEECChHH
Confidence 999999999999874 777776654
No 95
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=82.93 E-value=2.6 Score=38.90 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=51.9
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHH-----hc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL-----TS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-- 378 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~-----l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-- 378 (394)
..+++..+|..+..-.-.-++.+.+..+++++-+ ++ .|++++|| ...|.+|-|+++++++.++++
T Consensus 153 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-------~~nd~~A~g~~~al~~~G~~vP~ 225 (303)
T 3kke_A 153 YLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVV-------VASVNAAVGALSTALRLGLRVPE 225 (303)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEE-------ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEE-------ECCHHHHHHHHHHHHHcCCCCCC
Confidence 4577777776554322234566777777766665 54 68899999 446899999999999999874
Q ss_pred ---eEEeecce
Q 016159 379 ---CFGFHSNY 386 (394)
Q Consensus 379 ---~~~~~~~~ 386 (394)
+.+|-++.
T Consensus 226 di~vig~D~~~ 236 (303)
T 3kke_A 226 DLSIVGINTTW 236 (303)
T ss_dssp TCEEEEESCCH
T ss_pred ceEEEEEcChh
Confidence 77776543
No 96
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=82.75 E-value=3.1 Score=39.19 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=61.5
Q ss_pred ceeEEecCh--hHH-----HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHH-hcCCCccEEEEEccCCCCChHHHH
Q 016159 293 EIGCMVNGA--GLA-----MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL-TSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 293 ~Ig~~~nGa--Gl~-----m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~-l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
+|+++.... ... -...+++..+|..+....-+.++.+.+.-+++++-+ .+.|++++|| ...|.+|
T Consensus 187 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nd~~A 259 (344)
T 3kjx_A 187 RIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-------YSNDMIA 259 (344)
T ss_dssp SCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-------ESSHHHH
T ss_pred eEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-------ECCHHHH
Confidence 788876543 111 235678888887655444455777777777766544 4578999999 4468999
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
-|+++++++.++++ +.+|-++.+
T Consensus 260 ~g~~~al~~~g~~vP~disvvg~D~~~~ 287 (344)
T 3kjx_A 260 AGGLLYLLEQGIDIPGQIGLAGFNNVEL 287 (344)
T ss_dssp HHHHHHHHHTTCCTTTTCEEECSBCCGG
T ss_pred HHHHHHHHHcCCCCCCceEEEEECChHH
Confidence 99999999999864 677765543
No 97
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=82.58 E-value=3.3 Score=37.75 Aligned_cols=74 Identities=16% Similarity=0.096 Sum_probs=50.8
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
..+.+..+|.+...-.-.-++.+.+..+++++-+++.|++++|| ...|.+|.|+++++++.++++ +.+
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~vP~di~vvg 219 (290)
T 3clk_A 147 YKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGII-------AASDMTAIGILNQASSFGIEVPKDLSIVS 219 (290)
T ss_dssp HHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEE-------ECCcHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 45677777765432112235556777777766666577899998 345889999999999999763 777
Q ss_pred eecceE
Q 016159 382 FHSNYF 387 (394)
Q Consensus 382 ~~~~~~ 387 (394)
|-++.+
T Consensus 220 ~d~~~~ 225 (290)
T 3clk_A 220 IDGTEM 225 (290)
T ss_dssp EECCTH
T ss_pred eCChHH
Confidence 766543
No 98
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=81.58 E-value=2.9 Score=38.18 Aligned_cols=74 Identities=12% Similarity=-0.019 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eE
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CF 380 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~ 380 (394)
..+.+..+|.......-..++.+.+..+++++-+++ .|++++|| ...|.+|.|+++++++.++++ +.
T Consensus 149 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A~g~~~al~~~g~~vP~di~vi 221 (288)
T 3gv0_A 149 FNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-------SISGSSTIALVAGFEAAGVKIGEDVDIV 221 (288)
T ss_dssp HHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-------ESCHHHHHHHHHHHHTTTCCTTTSCEEE
T ss_pred HHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-------EcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 456777777644333334566777777777776665 57899999 345889999999999999874 77
Q ss_pred EeecceE
Q 016159 381 GFHSNYF 387 (394)
Q Consensus 381 ~~~~~~~ 387 (394)
+|-++.+
T Consensus 222 g~d~~~~ 228 (288)
T 3gv0_A 222 SKQSAEF 228 (288)
T ss_dssp EEESSTT
T ss_pred EecChHH
Confidence 7766543
No 99
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=81.27 E-value=5.7 Score=37.38 Aligned_cols=87 Identities=15% Similarity=0.035 Sum_probs=56.7
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++....+.. -...+.+..+|. .-.-.-.-++.+.+..+++++ ++.+.|++++|| +..|.+|
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~-------~~~d~~a 217 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVW-------SANDEMA 217 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-------ESSHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEE-------ECChHHH
Confidence 4677776443322 235677777775 221122345566666666555 555678999998 4468899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecce
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
.|+++|+++.+.++ +.+|-++.
T Consensus 218 ~g~~~al~~~G~~vP~di~vvg~d~~~ 244 (350)
T 3h75_A 218 LGAMQAARELGRKPGTDLLFSGVNSSP 244 (350)
T ss_dssp HHHHHHHHHTTCCBTTTBEEEEESCCH
T ss_pred HHHHHHHHHcCCCCCCCeEEEecCCCH
Confidence 99999999999873 67766553
No 100
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=80.92 E-value=3.8 Score=37.50 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=52.2
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eE
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CF 380 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~ 380 (394)
..+.+..+|...... -+-++.+.+..+++++-+++ .|++++|| ...|.+|-|+++++++.++++ +.
T Consensus 147 f~~al~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A~g~~~al~~~g~~vP~di~vi 218 (289)
T 3k9c_A 147 FLAAMDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAVV-------AFNDRCATGVLDLLVRSGRDVPADISVV 218 (289)
T ss_dssp HHHHHHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEEE-------ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 457777777653222 23466777777777665554 68999999 456899999999999999874 77
Q ss_pred EeecceE
Q 016159 381 GFHSNYF 387 (394)
Q Consensus 381 ~~~~~~~ 387 (394)
+|-++.+
T Consensus 219 g~D~~~~ 225 (289)
T 3k9c_A 219 GYDDSRL 225 (289)
T ss_dssp EEECCTT
T ss_pred EECCHHH
Confidence 7766543
No 101
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=80.87 E-value=3 Score=45.37 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=56.4
Q ss_pred cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCC-CHHHHHHHHHHHhcCCCccEEEEEc
Q 016159 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNA-SEGQVVEAFKILTSDEKVKAILVNI 353 (394)
Q Consensus 290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a-~~~~~~~a~~~~l~~~~v~~i~vni 353 (394)
.+|+||+++--|+++...+|.+...|.--.-++-+||++ ..-.+...++.+..||++++|++.+
T Consensus 653 ~~G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~ 717 (829)
T 3pff_A 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLG 717 (829)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEE
T ss_pred CCCcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEE
Confidence 569999999999999999999999998788899999986 3356788999999999999998743
No 102
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=80.29 E-value=6.1 Score=37.31 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=58.6
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++..-.+.. -...+++..+|.++... .-|+-+.+.-+++++ ++.+.|++++|| ...|.+|
T Consensus 180 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nD~~A 250 (349)
T 1jye_A 180 QQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAE--REGDWSAMSGFQQTMQMLNEGIVPTAML-------VANDQMA 250 (349)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEE--EECCSSHHHHHHHHHHHHHTTCCCSEEE-------ESSHHHH
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCcccc--ccCCCChHHHHHHHHHHHhCCCCCCEEE-------ECChHHH
Confidence 5898886543321 23567888887654322 234556666555554 444567899999 3468899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
-|+++++++.++++ +.+|-++.++
T Consensus 251 ~g~~~al~~~G~~vP~disvvGfD~~~~~ 279 (349)
T 1jye_A 251 LGAMRAITESGLRVGADISVVGYDDTEDS 279 (349)
T ss_dssp HHHHHHHHHTTCCBTTTBEEECSBCCGGG
T ss_pred HHHHHHHHHcCCCCCCcEEEEEECCcHHH
Confidence 99999999999864 6777665543
No 103
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=80.28 E-value=3.5 Score=37.63 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=58.0
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++..-.+.. -...+.+..+|.++ .++ ..++.+.+..+++++-+++ .|++++|| ...|.+|
T Consensus 139 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a 209 (293)
T 2iks_A 139 ETVLYLGALPELSVSFLREQGFRTAWKDDPREV-HFL-YANSYEREAAAQLFEKWLETHPMPQALF-------TTSFALL 209 (293)
T ss_dssp SSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCE-EEE-EESSSCHHHHHHHHHHHTTTSCCCSEEE-------ESSHHHH
T ss_pred CEEEEEecCcccccHHHHHHHHHHHHHHcCCCc-cEE-EcCCCChhhHHHHHHHHHhcCCCCCEEE-------ECChHHH
Confidence 5899886543322 12456666666532 222 2355677777777666655 57899999 3468899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
.|+++++++.++++ +.+|-++.+
T Consensus 210 ~g~~~al~~~g~~vP~di~vvg~d~~~~ 237 (293)
T 2iks_A 210 QGVMDVTLRRDGKLPSDLAIATFGDNEL 237 (293)
T ss_dssp HHHHHHHHHHHSSCCSSCEEEEESCCGG
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCHHH
Confidence 99999999998763 778877654
No 104
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=80.07 E-value=3.8 Score=37.19 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=56.0
Q ss_pred ceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHH
Q 016159 293 EIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIAS 365 (394)
Q Consensus 293 ~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~ 365 (394)
+|+++..-.+.. -...+.+..+|..+..-.-+.++.+.+..+++++-+++ .|++++|| ...|.+|.
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~ 201 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-------CNSDSIAL 201 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-------ESSHHHHH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-------EcCCHHHH
Confidence 666665433221 13457777777654332223456677777776665554 68899999 44689999
Q ss_pred HHHHHHHHcCCcc-----eEEee
Q 016159 366 GIVNAAKQVSALD-----CFGFH 383 (394)
Q Consensus 366 gii~a~~~~~~~~-----~~~~~ 383 (394)
|+++++++.++++ +.+|-
T Consensus 202 g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 202 GVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHcCCCCCCceEEEEeC
Confidence 9999999999864 66766
No 105
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=79.91 E-value=5.1 Score=36.44 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=55.8
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHH--Hh-cCCCccEEEEEccCCCCChHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI--LT-SDEKVKAILVNIFGGIMKCDV 362 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~--~l-~~~~v~~i~vni~ggi~~~d~ 362 (394)
++|+++..-.+.. -...+.+..+|.++. ... ++.+.+..+++++- ++ +.|++++|| ...|.
T Consensus 125 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~ 194 (285)
T 3c3k_A 125 KRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS-RIS--YAENLDYMAGKLATFSLLKSAVKPDAIF-------AISDV 194 (285)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC-EEE--ECSSSSHHHHHHHHHHHHSSSSCCSEEE-------ESSHH
T ss_pred CeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce-Eee--cCCChHHHHHHHHHHHHHcCCCCCeEEE-------ECCHH
Confidence 5888886543321 224577777876544 222 33344455555554 44 467899999 34588
Q ss_pred HHHHHHHHHHHcCCcc-----eEEeecceE
Q 016159 363 IASGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 363 vA~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
+|.|+++++++.++++ +.+|-++.+
T Consensus 195 ~A~g~~~al~~~g~~vP~di~vvg~d~~~~ 224 (285)
T 3c3k_A 195 LAAGAIQALTESGLSIPQDVAVVGFDGVDI 224 (285)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEECSBCCGG
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEeCChHH
Confidence 9999999999998763 777766544
No 106
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=78.51 E-value=4.6 Score=37.81 Aligned_cols=88 Identities=13% Similarity=0.023 Sum_probs=59.5
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~ 365 (394)
.+|+++..-.+.. -...+++..+|.+.....-+-++.+.+.-+++++-+++. ++++|| ...|.+|-
T Consensus 181 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ai~-------~~~d~~A~ 252 (332)
T 2o20_A 181 KKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLER-GATSAV-------VSHDTVAV 252 (332)
T ss_dssp SSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHT-TCCEEE-------ESCHHHHH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhcc-CCCEEE-------ECChHHHH
Confidence 4888886543321 235677888876543222234556777777777777665 788998 34688999
Q ss_pred HHHHHHHHcCCcc-----eEEeecceE
Q 016159 366 GIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 366 gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
|+++++++.++++ +.+|-++.+
T Consensus 253 g~~~al~~~G~~vP~disvig~D~~~~ 279 (332)
T 2o20_A 253 GLLSAMMDKGVKVPEDFEIISGANSPI 279 (332)
T ss_dssp HHHHHHHHTTCCTTTTCEEEESSCCGG
T ss_pred HHHHHHHHcCCCCccCEEEEEeCChHH
Confidence 9999999999864 777766554
No 107
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=78.36 E-value=6 Score=35.61 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=51.1
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHH-hcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eE
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL-TSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CF 380 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~-l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~ 380 (394)
..+.+..+|..+-... .-++.+.+..+++++-+ .+.|++++|| ...|.+|.|+++++++.++++ +.
T Consensus 138 f~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~vP~di~vv 209 (280)
T 3gyb_A 138 FEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIF-------SSNDITAIGALGAARELGLRVPEDLSII 209 (280)
T ss_dssp HHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEE-------ESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEE-------ECChHHHHHHHHHHHHcCCCCCCeeEEE
Confidence 4466777776544333 56667777766665544 4578999999 345889999999999999873 77
Q ss_pred Eeecce
Q 016159 381 GFHSNY 386 (394)
Q Consensus 381 ~~~~~~ 386 (394)
+|-++.
T Consensus 210 g~d~~~ 215 (280)
T 3gyb_A 210 GYDNTP 215 (280)
T ss_dssp EESCCH
T ss_pred EECCch
Confidence 776653
No 108
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=78.00 E-value=7.5 Score=30.13 Aligned_cols=68 Identities=10% Similarity=-0.091 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh--CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA--FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l--g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a 107 (394)
+=..+|++|.+.||+.-.--+-.+++... ...++ |..+-|+|+= + . |-+..+ ++++++++
T Consensus 16 ~C~~aK~~L~~~gi~y~~idi~~d~~~~~-~~~~~~~G~~tVP~I~i-----~---D--------g~~l~~~~~~el~~~ 78 (92)
T 2lqo_A 16 YCLRLKTALTANRIAYDEVDIEHNRAAAE-FVGSVNGGNRTVPTVKF-----A---D--------GSTLTNPSADEVKAK 78 (92)
T ss_dssp SHHHHHHHHHHTTCCCEEEETTTCHHHHH-HHHHHSSSSSCSCEEEE-----T---T--------SCEEESCCHHHHHHH
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCHHHHH-HHHHHcCCCCEeCEEEE-----e---C--------CEEEeCCCHHHHHHH
Confidence 34578999999999875444445555444 34443 3223465541 1 1 236667 99999999
Q ss_pred HHHHhccc
Q 016159 108 AGKMLGQI 115 (394)
Q Consensus 108 ~~~~l~~~ 115 (394)
.+++.+..
T Consensus 79 L~el~gL~ 86 (92)
T 2lqo_A 79 LVKIAGLE 86 (92)
T ss_dssp HHHHHCCS
T ss_pred HHHhcCCc
Confidence 99987653
No 109
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=77.99 E-value=4.8 Score=36.39 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=57.1
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc--CCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS--DEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~--~~~v~~i~vni~ggi~~~d~v 363 (394)
++|+++..-.+.. -...+.+..+|.+.. . +-++-+.+..+++++-+++ .|++++|| ...|.+
T Consensus 119 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-------~~~d~~ 188 (277)
T 3cs3_A 119 KKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE-I--IQGDFTEPSGYAAAKKILSQPQTEPVDVF-------AFNDEM 188 (277)
T ss_dssp SCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE-E--EECCSSHHHHHHHHHHHTTSCCCSSEEEE-------ESSHHH
T ss_pred ceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee-E--EeCCCChhHHHHHHHHHHhcCCCCCcEEE-------EcChHH
Confidence 4888886543321 134567777775433 2 2345567777777766665 58899998 346889
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecce
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
|.|+++++++.++++ +.+|-++.
T Consensus 189 a~g~~~al~~~g~~vP~di~vvg~d~~~ 216 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMGKDIRIIGFDNSE 216 (277)
T ss_dssp HHHHHHHHTTSSCCBTTTEEEECSSCCH
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEeCCcH
Confidence 999999999998763 66665554
No 110
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=77.91 E-value=11 Score=33.77 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=57.7
Q ss_pred CceeEEecChhHHH------HHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHH-hcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL-TSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~m------~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~-l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++..-.+... ...+++..+|.+.-. . .-++-+.+.-+++++-+ .+.|.+++|| ...|.+|
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~-~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nD~~A 194 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLA-S-QPADFDRIKGLNVMQNLLTAHPDVQAVF-------AQNDEMA 194 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEE-E-EECTTCHHHHHHHHHHHHHHCTTCCEEE-------ESSHHHH
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEE-e-cCCCCCHHHHHHHHHHHHHhCCCccEEE-------ECCCcHH
Confidence 47888764322221 245777777654322 1 23556667766666544 4578899999 4568999
Q ss_pred HHHHHHHHHcCCcc--eEEeecceEE
Q 016159 365 SGIVNAAKQVSALD--CFGFHSNYFC 388 (394)
Q Consensus 365 ~gii~a~~~~~~~~--~~~~~~~~~~ 388 (394)
-|+++|+++.+++. +.+|-++.++
T Consensus 195 ~g~~~al~~~g~~dv~vvGfD~~~~~ 220 (271)
T 2dri_A 195 LGALRALQTAGKSDVMVVGFDGTPDG 220 (271)
T ss_dssp HHHHHHHHHHTCCSCEEEEEECCHHH
T ss_pred HHHHHHHHHcCCCCcEEEEecCCHHH
Confidence 99999999998744 7777665443
No 111
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=77.83 E-value=8.4 Score=34.83 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=55.6
Q ss_pred CceeEEecChhHH------HHHHHHHHHc-CCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLH-GGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~-gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~v 363 (394)
|+|+++..-.+.. -...+.+..+ |.+... ..-++.+.+..+++++-++ +.|++++|| ...|.+
T Consensus 136 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~ 206 (293)
T 3l6u_A 136 GRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVD--SVSGNYDPVTSERVMRQVIDSGIPFDAVY-------CHNDDI 206 (293)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEE--EEECTTCHHHHHHHHHHHHHTTCCCSEEE-------ESSHHH
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEee--eccCCCCHHHHHHHHHHHHHhCCCCCEEE-------ECCchH
Confidence 5888886433321 1344666666 333211 1345566677666655554 568999999 446889
Q ss_pred HHHHHHHHHHcCC-cc-eEEeecce
Q 016159 364 ASGIVNAAKQVSA-LD-CFGFHSNY 386 (394)
Q Consensus 364 A~gii~a~~~~~~-~~-~~~~~~~~ 386 (394)
|-|+++++++.++ ++ +.+|-++.
T Consensus 207 a~g~~~al~~~g~~di~vig~d~~~ 231 (293)
T 3l6u_A 207 AMGVLEALKKAKISGKIVVGIDGNR 231 (293)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECCH
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCH
Confidence 9999999999998 44 77776654
No 112
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=77.81 E-value=7.3 Score=36.90 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCCccc-eeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----
Q 016159 306 ATMDIIKLHGGTPAN-FLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD----- 378 (394)
Q Consensus 306 ~t~D~i~~~gg~~aN-flD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~----- 378 (394)
...+++..+|..+.. .+-..++.+.+.-+++++-++ +.|++++|| ...|.+|-|+++++++.++++
T Consensus 227 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nD~~A~g~~~al~~~G~~vP~dis 299 (366)
T 3h5t_A 227 GAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVL-------CTVDALAFGVLEYLKSVGKSAPADLS 299 (366)
T ss_dssp HHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEE-------ECCcHHHHHHHHHHHHcCCCCCCceE
Confidence 467888888876543 333345667776666655444 578899999 446899999999999999874
Q ss_pred eEEeecceE
Q 016159 379 CFGFHSNYF 387 (394)
Q Consensus 379 ~~~~~~~~~ 387 (394)
+.+|-++.+
T Consensus 300 vigfD~~~~ 308 (366)
T 3h5t_A 300 LTGFDGTHM 308 (366)
T ss_dssp EEEEECCHH
T ss_pred EEEECCChh
Confidence 777766543
No 113
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=76.54 E-value=4.9 Score=36.11 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCcc-ceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----e
Q 016159 307 TMDIIKLHGGTPA-NFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----C 379 (394)
Q Consensus 307 t~D~i~~~gg~~a-NflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~ 379 (394)
..+.+..+|.+.. .+.- .++.+.+..+++++-++ +.|++++|| ...|.+|.|+++++++.++++ +
T Consensus 141 f~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~vP~di~v 212 (276)
T 2h0a_A 141 FQEALKEAGRPFSPDRLY-ITRHSQEGGRLALRHFLEKASPPLNVF-------AGADQVALGVLEEAVRLGLTPGRDVRV 212 (276)
T ss_dssp HHHHHHHTTCCCCGGGEE-EECSSHHHHHHHHHHHHTTCCSSEEEE-------CSSHHHHHHHHHHHHTTSCTTTTSEEE
T ss_pred HHHHHHHcCCCCChHHee-ecCCChHHHHHHHHHHHhCCCCCCEEE-------ECCcHHHHHHHHHHHHcCCCCCCCeEE
Confidence 4567777775432 2222 23446666666665555 457899998 456889999999999999763 7
Q ss_pred EEeecceE
Q 016159 380 FGFHSNYF 387 (394)
Q Consensus 380 ~~~~~~~~ 387 (394)
.+|-++.+
T Consensus 213 vg~d~~~~ 220 (276)
T 2h0a_A 213 LGFDGHPF 220 (276)
T ss_dssp EEESCCTH
T ss_pred EEeCCCch
Confidence 77776543
No 114
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=76.12 E-value=4.1 Score=38.57 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=59.8
Q ss_pred ceeEEecChhH-------HHHHHHHHHHcCCCccc-eeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHH
Q 016159 293 EIGCMVNGAGL-------AMATMDIIKLHGGTPAN-FLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 293 ~Ig~~~nGaGl-------~m~t~D~i~~~gg~~aN-flD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~v 363 (394)
+|+++....+. --...+++..+|..+.. ..-..++-+.+.-+++++-++ +.|++++|| ...|.+
T Consensus 189 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nD~~ 261 (355)
T 3e3m_A 189 KIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIF-------CVSDMP 261 (355)
T ss_dssp SEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEE-------ESSHHH
T ss_pred eEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEE-------ECChHH
Confidence 88888653322 13366788888876553 333345566677666666555 568999999 456899
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecce
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
|-|+++++++.++++ +.+|-++.
T Consensus 262 A~g~~~al~~~G~~vP~disvigfD~~~ 289 (355)
T 3e3m_A 262 AFGLLSRLKSIGVAVPEQVSVVGFGNFE 289 (355)
T ss_dssp HHHHHHHHHHHTCCTTTTCEEECSSCCH
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECChH
Confidence 999999999999874 66665543
No 115
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=75.98 E-value=0.38 Score=46.45 Aligned_cols=46 Identities=13% Similarity=0.024 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHH------------HHHH-HHHHhCCCCCcEEEEEee
Q 016159 30 IHEYQGAELMAKYGINVPKGLAVASVD------------EVKK-AIQDAFPDHKELVVKSQI 78 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~~~~~s~e------------ea~~-~a~~lg~~~~PvVvK~q~ 78 (394)
.+...+.++|+++|||+|++.++.... ++.+ ..+.++ +|+|.||..
T Consensus 96 ~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~---kPfVeKPv~ 154 (330)
T 3t7a_A 96 QDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQ---KPFVEKPVS 154 (330)
T ss_dssp TBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEE---SSEEEEESB
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccchhhhhcccccc---CCeeEcccc
Confidence 456678899999999999999987521 1111 234455 899999965
No 116
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=75.86 E-value=3.6 Score=37.51 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=44.1
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eE
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CF 380 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~ 380 (394)
..+.+..+|...-.-.-.-++.+.+..+++++ ++.+.|++++|| ...|.+|.|+++++++.++++ +.
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~vP~di~vv 219 (291)
T 3egc_A 147 FRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALL-------TSSHRITEGAMQALNVLGLRYGPDVEIV 219 (291)
T ss_dssp HHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEE-------ESSHHHHHHHHHHHHHHTCCBTTTBEEE
T ss_pred HHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEE-------ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 34666666654322111123344444444444 444678999999 455889999999999999873 77
Q ss_pred EeecceE
Q 016159 381 GFHSNYF 387 (394)
Q Consensus 381 ~~~~~~~ 387 (394)
+|-++.+
T Consensus 220 g~d~~~~ 226 (291)
T 3egc_A 220 SFDNLPW 226 (291)
T ss_dssp EESCCGG
T ss_pred EecCchh
Confidence 7766654
No 117
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=75.54 E-value=9.8 Score=34.40 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=56.4
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCcc-ceee-cCCCC----CHHHHHHHHHHHhcCCCccEEEEEccCCCCC
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPA-NFLD-VGGNA----SEGQVVEAFKILTSDEKVKAILVNIFGGIMK 359 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~a-NflD-~gG~a----~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~ 359 (394)
++|+++..-.+.. -...+.+..+|.+.. .++- ..++- +.+..+++++-+++. ++++|| ..
T Consensus 123 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~-------~~ 194 (288)
T 2qu7_A 123 KEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSK-GIKGIV-------AT 194 (288)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHT-TCCEEE-------EC
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhc-CCCEEE-------EC
Confidence 4888886533321 123567777776532 2222 03344 556666666666665 788998 33
Q ss_pred hHHHHHHHHHHHHHcCCcc-----eEEeecceE
Q 016159 360 CDVIASGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 360 ~d~vA~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
.|.+|.|+++++++.++++ +.+|-++.+
T Consensus 195 ~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~~ 227 (288)
T 2qu7_A 195 NHLLLLGALQAIKESEKEIKKDVIIVGFDDSYW 227 (288)
T ss_dssp SHHHHHHHHHHHHHSSCCBTTTBEEEEESCCTH
T ss_pred CcHHHHHHHHHHHHhCCCCCCceEEEEeCChHH
Confidence 5889999999999998863 777766543
No 118
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=75.52 E-value=6 Score=37.16 Aligned_cols=85 Identities=13% Similarity=0.186 Sum_probs=59.2
Q ss_pred CceeEEecChhHHH------HHHHHHHHcCCCccceeecC-CCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVG-GNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaGl~m------~t~D~i~~~gg~~aNflD~g-G~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~v 363 (394)
.+|+++..-.+... ...+++..+|.. ..+- ++.+.+.-+++++-+++ .| +++|| ...|.+
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~----~~~~~~~~~~~~~~~~~~~ll~~~~-~~ai~-------~~nd~~ 242 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIYGAE----VTFHFGHYSVESGEEMAQVVFNNGL-PDALI-------VASPRL 242 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE----EEEEECCSSHHHHHHHHHHHHHTCC-CSEEE-------ECCHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC----EEEecCCCCHHHHHHHHHHHhcCCC-CcEEE-------ECCHHH
Confidence 48998876544321 245777777755 3333 66677777777665554 56 99999 446899
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
|-|+++++++.++++ +.+|-++.++
T Consensus 243 A~g~~~al~~~G~~vP~disvig~D~~~~~ 272 (333)
T 3jvd_A 243 MAGVMRAFTRLNVRVPHDVVIGGYDDPEWY 272 (333)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEESCCGGG
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECChHHH
Confidence 999999999999864 7777766543
No 119
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=75.11 E-value=5.6 Score=37.29 Aligned_cols=89 Identities=11% Similarity=-0.022 Sum_probs=58.8
Q ss_pred CceeEEecChhHH-----HHHHHHHHHcCCC-ccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA-----MATMDIIKLHGGT-PANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~-----m~t~D~i~~~gg~-~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|++++.-.... -...+++..+|.. +...+-..++.+.+.-+++++-++ +.|++++|| ...|.+|
T Consensus 179 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nD~~A 251 (339)
T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALF-------CCNDDLA 251 (339)
T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEE-------ESSHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEE-------ECChHHH
Confidence 3888886432221 1255777777763 222223356667777666665554 568899998 4558999
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
-|+++++++.++++ +.+|-++.+
T Consensus 252 ~g~~~al~~~G~~vP~disvvgfD~~~~ 279 (339)
T 3h5o_A 252 IGALARSQQLGIAVPERLAIAGFNDLQP 279 (339)
T ss_dssp HHHHHHHHHTTCCTTTTCEEECSBCCGG
T ss_pred HHHHHHHHHcCCCCCCCEEEEEECCHHH
Confidence 99999999999874 667765543
No 120
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=73.91 E-value=11 Score=34.17 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=54.5
Q ss_pred CceeEEecChhHHH------HHHHHHHHc-CCCccceeecCCCCCHHHHHHHHHH-HhcCCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAGLAM------ATMDIIKLH-GGTPANFLDVGGNASEGQVVEAFKI-LTSDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaGl~m------~t~D~i~~~-gg~~aNflD~gG~a~~~~~~~a~~~-~l~~~~v~~i~vni~ggi~~~d~v 363 (394)
++|+++..-.+... ...+++..+ |.+.-. ..-++.+.+.-+++++- +.+.|.+++|| ...|.+
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nD~~ 194 (283)
T 2ioy_A 124 GNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA--KQAADFDRSKGLSVMENILQAQPKIDAVF-------AQNDEM 194 (283)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE--EEECTTCHHHHHHHHHHHHHHCSCCCEEE-------ESSHHH
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--eccCCCCHHHHHHHHHHHHHhCCCccEEE-------ECCchH
Confidence 47888864333221 234556555 322211 12345566766666554 44578899999 456899
Q ss_pred HHHHHHHHHHcCC-cc-eEEeecceE
Q 016159 364 ASGIVNAAKQVSA-LD-CFGFHSNYF 387 (394)
Q Consensus 364 A~gii~a~~~~~~-~~-~~~~~~~~~ 387 (394)
|-|+++|+++.++ ++ +.+|-++..
T Consensus 195 A~g~~~al~~~G~~di~viG~D~~~~ 220 (283)
T 2ioy_A 195 ALGAIKAIEAANRQGIIVVGFDGTED 220 (283)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred HHHHHHHHHHCCCCCcEEEEeCCCHH
Confidence 9999999999998 33 777766543
No 121
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=73.70 E-value=13 Score=33.71 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=49.9
Q ss_pred HHHHHHHcCCCccceee-cCCCCCHHHHHHHHH-HHhcCCCccE--EEEEccCCCCChHHHHHHHHHHHHHcCCc--c--
Q 016159 307 TMDIIKLHGGTPANFLD-VGGNASEGQVVEAFK-ILTSDEKVKA--ILVNIFGGIMKCDVIASGIVNAAKQVSAL--D-- 378 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD-~gG~a~~~~~~~a~~-~~l~~~~v~~--i~vni~ggi~~~d~vA~gii~a~~~~~~~--~-- 378 (394)
..+.+..+|......+. .-++.+.+..+++++ ++.+.|++++ || ...|.+|-|+++|+++.+++ .
T Consensus 155 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~-------~~nD~~A~g~~~al~~~g~~v~di~ 227 (306)
T 8abp_A 155 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV-------GMNDSTVLGGVRATEGQGFKAADII 227 (306)
T ss_dssp HHHHHHHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEE-------CSSHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHhcCCCCcEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEE-------eCCcHHHHHHHHHHHHcCCCCCceE
Confidence 46777777643333333 235566666666555 5556789998 55 45689999999999999986 2
Q ss_pred eEEeecce
Q 016159 379 CFGFHSNY 386 (394)
Q Consensus 379 ~~~~~~~~ 386 (394)
+.+|-++.
T Consensus 228 vvG~D~~~ 235 (306)
T 8abp_A 228 GIGINGVD 235 (306)
T ss_dssp EEEESSGG
T ss_pred EEEeCcHH
Confidence 77776654
No 122
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=72.54 E-value=9.7 Score=34.72 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=56.5
Q ss_pred CCceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHH
Q 016159 291 DGEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~v 363 (394)
.++|+++....+.. -...+.+..+|.+.. ... +..+.+..+++++ ++.++|++++|| ...|.+
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~-~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~ 199 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFE-ELD--VGTDPNQVQSRVKSYFKIHPETNIIF-------CLTSQA 199 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEE-EEE--CCSCHHHHHHHHHHHHHHCTTCCEEE-------ESSHHH
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEE-Eee--cCCChHHHHHHHHHHHHhCCCCCEEE-------EcCCcc
Confidence 35888886544422 224677887765442 222 4445666666555 566789999999 345889
Q ss_pred HHHHHHHHHHcCCc-----c-eEEeecc
Q 016159 364 ASGIVNAAKQVSAL-----D-CFGFHSN 385 (394)
Q Consensus 364 A~gii~a~~~~~~~-----~-~~~~~~~ 385 (394)
|.|+++++++.+++ + +.+|-++
T Consensus 200 A~g~~~al~~~g~~vP~~dv~vig~D~~ 227 (297)
T 3rot_A 200 LDPLGQMLLHPDRYDFNYQPQVYSFDKT 227 (297)
T ss_dssp HHHHHHHHHSHHHHTCCCCCEEEEECCC
T ss_pred hHHHHHHHHhcCCccCCCceEEEEeCCC
Confidence 99999999998863 3 6776554
No 123
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=72.34 E-value=14 Score=33.56 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=55.9
Q ss_pred CceeEEecChhHHH------HHHHHHHHc-CCCccceeecCCCCCHHHHHHHHHHH-hcCCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAGLAM------ATMDIIKLH-GGTPANFLDVGGNASEGQVVEAFKIL-TSDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaGl~m------~t~D~i~~~-gg~~aNflD~gG~a~~~~~~~a~~~~-l~~~~v~~i~vni~ggi~~~d~v 363 (394)
++|+++..-.+..- ...+++..+ |.++. . ..-++-+.+.-+++++-+ .+.|++++|| ...|.+
T Consensus 134 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~-~-~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nD~~ 204 (288)
T 1gud_A 134 GEVAIIEGKAGNASGEARRNGATEAFKKASQIKLV-A-SQPADWDRIKALDVATNVLQRNPNIKAIY-------CANDTM 204 (288)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEE-E-EEECTTCHHHHHHHHHHHHHHCTTCCEEE-------ESSHHH
T ss_pred CEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEE-E-eecCCccHHHHHHHHHHHHHhCCCceEEE-------ECCCch
Confidence 47888764333221 234666655 43321 1 123566777766666544 4568899999 456899
Q ss_pred HHHHHHHHHHcCCcc---eEEeecceE
Q 016159 364 ASGIVNAAKQVSALD---CFGFHSNYF 387 (394)
Q Consensus 364 A~gii~a~~~~~~~~---~~~~~~~~~ 387 (394)
|-|+++|+++.+++. +.+|-++..
T Consensus 205 A~g~~~al~~~G~~~dv~vvGfD~~~~ 231 (288)
T 1gud_A 205 AMGVAQAVANAGKTGKVLVVGTDGIPE 231 (288)
T ss_dssp HHHHHHHHHHTTCTTTSEEEEESCCHH
T ss_pred HHHHHHHHHhcCCCCCeEEEEeCCCHH
Confidence 999999999998752 778776643
No 124
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=72.17 E-value=15 Score=34.55 Aligned_cols=86 Identities=10% Similarity=0.084 Sum_probs=57.2
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA 364 (394)
.+|+++..-.+.. -...+++..+|..+ .++- -|+.+.+.-+++++-+++ .| + +|| ...|.+|
T Consensus 185 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~-~~v~-~~~~~~~~~~~~~~~ll~~~~-~-ai~-------~~nD~~A 253 (348)
T 3bil_A 185 LPIGYLSGPMDTSTGRERLEDFKAACANSKIGE-QLVF-LGGYEQSVGFEGATKLLDQGA-K-TLF-------AGDSMMT 253 (348)
T ss_dssp CSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC-CEEE-CCCSSHHHHHHHHHHHHHTTC-S-EEE-------ESSHHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCc-cEEE-cCCCCHHHHHHHHHHHHcCCC-C-EEE-------EcChHHH
Confidence 4888886433321 23567787787633 3332 345566777777665555 45 7 888 3468899
Q ss_pred HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159 365 SGIVNAAKQVSALD-----CFGFHSNYFC 388 (394)
Q Consensus 365 ~gii~a~~~~~~~~-----~~~~~~~~~~ 388 (394)
-|+++++++.++++ +.+|-++.++
T Consensus 254 ~g~~~al~~~G~~vP~disvvG~D~~~~~ 282 (348)
T 3bil_A 254 IGVIEACHKAGLVIGKDVSVIGFDTHPLF 282 (348)
T ss_dssp HHHHHHHHHTTCCBTTTBEEEEESCCGGG
T ss_pred HHHHHHHHHcCCCCCCCeEEEEeCCcHHH
Confidence 99999999999864 7787766543
No 125
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=72.11 E-value=13 Score=33.55 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=53.9
Q ss_pred CceeEEecChhHHH------HHHHHHHHcCC-C-ccceeecCCCCCHHHHHHHHH-HHhcCC---CccEEEEEccCCCCC
Q 016159 292 GEIGCMVNGAGLAM------ATMDIIKLHGG-T-PANFLDVGGNASEGQVVEAFK-ILTSDE---KVKAILVNIFGGIMK 359 (394)
Q Consensus 292 G~Ig~~~nGaGl~m------~t~D~i~~~gg-~-~aNflD~gG~a~~~~~~~a~~-~~l~~~---~v~~i~vni~ggi~~ 359 (394)
++|+++..-.+... ...+++..++| + .....-.-++.+.+..+++++ ++.+.| ++++|| ..
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-------~~ 198 (291)
T 3l49_A 126 GNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIW-------AC 198 (291)
T ss_dssp EEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEE-------ES
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEE-------EC
Confidence 48888854333221 23567776643 2 121111223445566555544 555677 899998 44
Q ss_pred hHHHHHHHHHHHHHcCC-cc-eEEeecc
Q 016159 360 CDVIASGIVNAAKQVSA-LD-CFGFHSN 385 (394)
Q Consensus 360 ~d~vA~gii~a~~~~~~-~~-~~~~~~~ 385 (394)
.|.+|.|+++++++.++ ++ +.+|-++
T Consensus 199 ~d~~a~g~~~al~~~g~~di~vvg~d~~ 226 (291)
T 3l49_A 199 WDVPMIGATQALQAAGRTDIRTYGVDGS 226 (291)
T ss_dssp SHHHHHHHHHHHHHTTCCSCEEEEEECC
T ss_pred CCchHHHHHHHHHHcCCCCeEEEEecCC
Confidence 68899999999999998 44 7777655
No 126
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=71.64 E-value=10 Score=34.45 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=49.0
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcC-C--CccEEEEEccCCCCChHHHHHHHHHHHHHcCC-cc-eEE
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSD-E--KVKAILVNIFGGIMKCDVIASGIVNAAKQVSA-LD-CFG 381 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~-~--~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~-~~-~~~ 381 (394)
..+.+..+|.....-.-.-++.+.+..+++++-+++. | ++++|| ...|.+|.|+++++++.+. ++ +.+
T Consensus 162 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~di~vig 234 (309)
T 2fvy_A 162 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI-------ANNDAMAMGAVEALKAHNKSSIPVFG 234 (309)
T ss_dssp HHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEE-------ESSHHHHHHHHHHHHHTTCTTSCEEC
T ss_pred HHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEE-------ECCchhHHHHHHHHHHcCCCCceEEe
Confidence 4567777665432111123455667777777666654 5 899998 3468899999999999985 45 777
Q ss_pred eecceE
Q 016159 382 FHSNYF 387 (394)
Q Consensus 382 ~~~~~~ 387 (394)
|-++..
T Consensus 235 ~d~~~~ 240 (309)
T 2fvy_A 235 VDALPE 240 (309)
T ss_dssp SBCCHH
T ss_pred cCCCHH
Confidence 766543
No 127
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=70.82 E-value=12 Score=34.15 Aligned_cols=86 Identities=10% Similarity=0.126 Sum_probs=54.0
Q ss_pred CceeEEecChhHHH------HHHHHHHHcCCCccceee-cCCCCCHHHHHHHHHHHhc-C---CCccEEEEEccCCCCCh
Q 016159 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLD-VGGNASEGQVVEAFKILTS-D---EKVKAILVNIFGGIMKC 360 (394)
Q Consensus 292 G~Ig~~~nGaGl~m------~t~D~i~~~gg~~aNflD-~gG~a~~~~~~~a~~~~l~-~---~~v~~i~vni~ggi~~~ 360 (394)
++|+++..-.+... ...+++..+|. ..... .-++-+.+..+++++-+++ . |++++|| ...
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~-------~~n 199 (306)
T 2vk2_A 129 CNVVELQGTVGASVAIDRKKGFAEAIKNAPN--IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVY-------AHN 199 (306)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHTTTCTT--EEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCEEE-------ESS
T ss_pred CeEEEEEcCCCChhHHHHHHHHHHHHhhCCC--eEEEEeccCCCcHHHHHHHHHHHHHhCCCCCCeeEEE-------ECC
Confidence 47887764333211 23455555543 12232 2355666766666665554 4 7899998 345
Q ss_pred HHHHHHHHHHHHHcCCcc-----eEEeecce
Q 016159 361 DVIASGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 361 d~vA~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
|.+|.|+++++++.++++ +.+|-++.
T Consensus 200 d~~A~g~~~al~~~G~~vP~di~vig~D~~~ 230 (306)
T 2vk2_A 200 DDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 230 (306)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTBEEEEEECCH
T ss_pred chHHHHHHHHHHHcCCCCCCCeEEEeecCCH
Confidence 889999999999999864 77776654
No 128
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=68.13 E-value=6.6 Score=36.06 Aligned_cols=84 Identities=7% Similarity=0.008 Sum_probs=51.8
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHH--hcCCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL--TSDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~--l~~~~v~~i~vni~ggi~~~d~v 363 (394)
.+|+++..-.+.. -...+.+..+|....... -++.+. .+++++-+ .+.|++++|| ...|.+
T Consensus 145 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~~~~~~--~~~~~~~~~l~~~~~~~ai~-------~~nd~~ 213 (305)
T 3huu_A 145 RHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVV--IKSMND--LRDFIKQYCIDASHMPSVII-------TSDVML 213 (305)
T ss_dssp CSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEE--ECSHHH--HHHHC--------CCCSEEE-------ESSHHH
T ss_pred CeEEEEcCCcccchhHHHHHHHHHHHHHcCCCcccEE--ecCcHH--HHHHHHHhhhcCCCCCCEEE-------ECChHH
Confidence 4888886544332 224577777776544322 233332 44454444 4578999999 456899
Q ss_pred HHHHHHHHHHcCCcc-----eEEeecce
Q 016159 364 ASGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 364 A~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
|-|+++++++.++++ +.+|-++.
T Consensus 214 A~g~~~al~~~g~~vP~di~vig~D~~~ 241 (305)
T 3huu_A 214 NMQLLNVLYEYQLRIPEDIQTATFNTSF 241 (305)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEESCSH
T ss_pred HHHHHHHHHHcCCCCCcceEEEEECCcc
Confidence 999999999999874 77776654
No 129
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=67.82 E-value=6.1 Score=35.78 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG 381 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~ 381 (394)
..+.+..+|.++...+ ..++.+ +..+-+++.+.|++++|| ...|.+|-|+++++++.++++ +.+
T Consensus 144 f~~~l~~~g~~~~~~~-~~~~~~---~~~~~~~l~~~~~~~ai~-------~~~d~~A~g~~~al~~~g~~vP~di~vig 212 (277)
T 3hs3_A 144 MTAEASKLKIDYLLEE-TPENNP---YISAQSALNKSNQFDAII-------TVNDLYAAEIIKEAKRRNLKIPDDFQLVG 212 (277)
T ss_dssp HHHHHHHTTCEEEEEE-CCSSCH---HHHHHHHHHTGGGCSEEE-------CSSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHCCCCCCCCC-ccCCch---HHHHHHHHcCCCCCCEEE-------ECCHHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 3456666654332211 122222 333344555568899998 456899999999999999874 667
Q ss_pred eecceE
Q 016159 382 FHSNYF 387 (394)
Q Consensus 382 ~~~~~~ 387 (394)
|-++.+
T Consensus 213 ~d~~~~ 218 (277)
T 3hs3_A 213 YDNNIL 218 (277)
T ss_dssp SBCCGG
T ss_pred eCCcHH
Confidence 665543
No 130
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=66.95 E-value=19 Score=32.31 Aligned_cols=87 Identities=13% Similarity=0.006 Sum_probs=55.9
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++..-.+.. -...+.+..+|..... .+-++.+.+..+++++ ++.+.|++++|| ...|.+|
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a 202 (289)
T 3brs_A 132 GKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEA--IYYCDSNYDKAYDGTVELLTKYPDISVMV-------GLNQYSA 202 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEE--EEECTTCHHHHHHHHHHHHHHCTTEEEEE-------ESSHHHH
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEe--eecCCCCHHHHHHHHHHHHHhCCCceEEE-------ECCCcch
Confidence 5888886543322 1234566666544211 1234556676666555 445578899998 3457899
Q ss_pred HHHHHHHHHcCCc--c-eEEeecceE
Q 016159 365 SGIVNAAKQVSAL--D-CFGFHSNYF 387 (394)
Q Consensus 365 ~gii~a~~~~~~~--~-~~~~~~~~~ 387 (394)
.|+++++++.+++ + +.+|-++..
T Consensus 203 ~g~~~al~~~G~~~di~vvg~d~~~~ 228 (289)
T 3brs_A 203 TGAARAIKDMSLEAKVKLVCIDSSME 228 (289)
T ss_dssp HHHHHHHHHTTCTTTSEEEEEESCSC
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCHH
Confidence 9999999999875 3 777777654
No 131
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=66.67 E-value=14 Score=33.65 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEE--EccCCCC-ChHHHHHHHHHHHHH-cCCcceEEeecce
Q 016159 327 NASEGQVVEAFKILTSDEKVKAILV--NIFGGIM-KCDVIASGIVNAAKQ-VSALDCFGFHSNY 386 (394)
Q Consensus 327 ~a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~-~~d~vA~gii~a~~~-~~~~~~~~~~~~~ 386 (394)
..+.+.+.++++-+.+|+++++|++ |.+||-. .++++.+. ++.+++ .+..++-.++|..
T Consensus 28 ~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~-l~~~~~~~~kPVia~v~g~a 90 (240)
T 3rst_A 28 GYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKK-LEEIKKETKKPIYVSMGSMA 90 (240)
T ss_dssp CCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHH-HHHHHHHHCCCEEEEEEEEE
T ss_pred CcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHH-HHHHHHhCCCeEEEEECCee
Confidence 5678999999999999999999988 6666533 23333332 333443 3433345566654
No 132
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=66.53 E-value=22 Score=32.99 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=54.7
Q ss_pred CceeEEecChhHH-----HHHHHHHHHcCCCcccee-ecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA-----MATMDIIKLHGGTPANFL-DVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~-----m~t~D~i~~~gg~~aNfl-D~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++..-.+.. -...+++..+|. + +.. -+-++.+.+..+++++-++ +.|++++|| ...|.+|
T Consensus 176 ~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nd~~A 246 (342)
T 1jx6_A 176 TYYSVLYFSEGYISDVRGDTFIHQVNRDNN-F-ELQSAYYTKATKQSGYDAAKASLAKHPDVDFIY-------ACSTDVA 246 (342)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHHHHHHHC-C-EEEEEECCCSSHHHHHHHHHHHHHHCCCCSEEE-------ESSHHHH
T ss_pred ceEEEEEcCCcchhhHHHHHHHHHHHhCCC-c-EEEEEecCCCCHHHHHHHHHHHHHhCCCccEEE-------ECCChhH
Confidence 6888886544421 124466766665 2 111 1235556676666665544 568899999 4468899
Q ss_pred HHHHHHHHHcCCc-c-eEEeecc
Q 016159 365 SGIVNAAKQVSAL-D-CFGFHSN 385 (394)
Q Consensus 365 ~gii~a~~~~~~~-~-~~~~~~~ 385 (394)
-|+++|+++.+++ + +.+|-++
T Consensus 247 ~g~~~al~~~g~~di~vvg~D~~ 269 (342)
T 1jx6_A 247 LGAVDALAELGREDIMINGWGGG 269 (342)
T ss_dssp HHHHHHHHHHTCTTSEEBCSBCC
T ss_pred HHHHHHHHHcCCCCcEEEEeCCC
Confidence 9999999999873 2 6666554
No 133
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=66.38 E-value=18 Score=32.79 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=48.3
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc--c-eEEe
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL--D-CFGF 382 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~--~-~~~~ 382 (394)
..+.+..+|...--..-..++.+.+..+++++ ++.+.|++++|| ...|.+|.|+++++++.+++ + +.+|
T Consensus 148 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~~di~vig~ 220 (305)
T 3g1w_A 148 FKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIF-------ATEANGGVGVGDAVRLESRAGEIQIISF 220 (305)
T ss_dssp HHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-------ESSHHHHHHHHHHHHHTTCTTTSEEEEE
T ss_pred HHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEE-------ECCCcchhhHHHHHHhcCCCCCeEEEEe
Confidence 34666666543322222345566676666655 455678999998 45688999999999999985 3 7777
Q ss_pred ecc
Q 016159 383 HSN 385 (394)
Q Consensus 383 ~~~ 385 (394)
-++
T Consensus 221 d~~ 223 (305)
T 3g1w_A 221 DTD 223 (305)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 134
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=66.14 E-value=7.2 Score=35.64 Aligned_cols=87 Identities=22% Similarity=0.121 Sum_probs=53.1
Q ss_pred ceeEEecChhHH------HHHHHHHHHcCCCccceeecCC---CCCHHHHH--HHH-HHHhcCCCccEEEEEccCCCCCh
Q 016159 293 EIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGG---NASEGQVV--EAF-KILTSDEKVKAILVNIFGGIMKC 360 (394)
Q Consensus 293 ~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG---~a~~~~~~--~a~-~~~l~~~~v~~i~vni~ggi~~~ 360 (394)
+|+++..-.+.. -...+++..+|...-.-.-.-+ +.+.+.-+ +++ +++.+.|++++|| ...
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~ 205 (301)
T 3miz_A 133 RIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIM-------SGN 205 (301)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEE-------ESS
T ss_pred eEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEE-------ECC
Confidence 677776443322 2255777778765432211222 22322222 333 4555578999999 456
Q ss_pred HHHHHHHHHHHHHcCCcc-----eEEeecce
Q 016159 361 DVIASGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 361 d~vA~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
|.+|-|+++++++.++++ +.+|-++.
T Consensus 206 d~~A~g~~~al~~~g~~vP~di~vig~D~~~ 236 (301)
T 3miz_A 206 DEMAIQIYIAAMALGLRIPQDVSIVGFDDFR 236 (301)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHCEEECSBCCH
T ss_pred HHHHHHHHHHHHHcCCCCCCCeeEEEeCCcH
Confidence 889999999999999874 66665554
No 135
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=63.16 E-value=16 Score=32.21 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=48.6
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeec
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHS 384 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~ 384 (394)
..+++..+|.++ .. +-++.+.+..+++++-+++ +++++|| ...|.+|.|+++++++.+++. +.+|-+
T Consensus 138 f~~al~~~g~~~-~~--~~~~~~~~~~~~~~~~~l~-~~~~ai~-------~~~d~~A~g~~~al~~~g~~di~vig~d~ 206 (255)
T 1byk_A 138 YLAFCKAHKLHP-VA--ALPGLAMKQGYENVAKVIT-PETTALL-------CATDTLALGASKYLQEQRIDTLQLASVGN 206 (255)
T ss_dssp HHHHHHHTTCCC-EE--ECCCSCHHHHHHHSGGGCC-TTCCEEE-------ESSHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred HHHHHHHcCCCc-ce--eecCCccchHHHHHHHHhc-CCCCEEE-------EeChHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 345666666543 22 2345567777777776666 6789998 346889999999999998743 777766
Q ss_pred ceE
Q 016159 385 NYF 387 (394)
Q Consensus 385 ~~~ 387 (394)
+.+
T Consensus 207 ~~~ 209 (255)
T 1byk_A 207 TPL 209 (255)
T ss_dssp CHH
T ss_pred chh
Confidence 543
No 136
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=62.92 E-value=6.6 Score=35.90 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=47.8
Q ss_pred HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-C---CCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc----
Q 016159 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-D---EKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD---- 378 (394)
Q Consensus 307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~---~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~---- 378 (394)
..+++..+|..+. -+-++.+.+..+++++-+++ . +++++|| ...|.+|-|+++++++.++++
T Consensus 153 f~~al~~~g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-------~~~d~~A~g~~~al~~~g~~vP~di 222 (295)
T 3hcw_A 153 FETVASQFNLDYQ---IIETSNEREVILNYMQNLHTRLKDPNIKQAII-------SLDAMLHLAILSVLYELNIEIPKDV 222 (295)
T ss_dssp HHHHHHHTTCEEE---EEEECSCHHHHHHHHHHHHHHHTCTTSCEEEE-------ESSHHHHHHHHHHHHHTTCCTTTTE
T ss_pred HHHHHHHcCCCee---EEeccCCHHHHHHHHHHHHhhcccCCCCcEEE-------ECChHHHHHHHHHHHHcCCCCCCce
Confidence 4566666665433 22345567777777666654 3 3788988 446889999999999999874
Q ss_pred -eEEeecce
Q 016159 379 -CFGFHSNY 386 (394)
Q Consensus 379 -~~~~~~~~ 386 (394)
+.+|-++.
T Consensus 223 ~vig~D~~~ 231 (295)
T 3hcw_A 223 MTATFNDSY 231 (295)
T ss_dssp EEEEECCSH
T ss_pred EEEEeCChh
Confidence 77776654
No 137
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=62.27 E-value=17 Score=32.26 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCC--cc-eEEeecce
Q 016159 326 GNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSA--LD-CFGFHSNY 386 (394)
Q Consensus 326 G~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~--~~-~~~~~~~~ 386 (394)
++.+.+..+++++ ++.+.|++++|| ...|.+|.|+++++++.++ ++ +.+|-++.
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~p~di~vig~d~~~ 224 (276)
T 3ksm_A 167 AGDDRGAARSEMLRLLKETPTIDGLF-------TPNESTTIGALVAIRQSGMSKQFGFIGFDQTE 224 (276)
T ss_dssp CCSSHHHHHHHHHHHHHHCSCCCEEE-------CCSHHHHHHHHHHHHHTTCTTSSEEEEESCCH
T ss_pred CCCcHHHHHHHHHHHHHhCCCceEEE-------ECCchhhhHHHHHHHHcCCCCCeEEEEeCCCH
Confidence 4456666666555 455678999998 5578899999999999997 22 77776554
No 138
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=59.06 E-value=18 Score=33.49 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=56.1
Q ss_pred CceeEEecChhHHH------HHHHHHHHc-CCCccceeecCCCCCHHHHHHHHHHHh-c-CCCccEEEEEccCCCCChHH
Q 016159 292 GEIGCMVNGAGLAM------ATMDIIKLH-GGTPANFLDVGGNASEGQVVEAFKILT-S-DEKVKAILVNIFGGIMKCDV 362 (394)
Q Consensus 292 G~Ig~~~nGaGl~m------~t~D~i~~~-gg~~aNflD~gG~a~~~~~~~a~~~~l-~-~~~v~~i~vni~ggi~~~d~ 362 (394)
++|+++..-.+... ...+++..+ |.+.... .-++-+.+..+++++-++ + .|++++|| ...|.
T Consensus 137 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~aI~-------~~nd~ 207 (332)
T 2rjo_A 137 GGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDF--QVADWNSQKAFPIMQAWMTRFNSKIKGVW-------AANDD 207 (332)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEE--EECTTCHHHHHHHHHHHHHHHGGGEEEEE-------ESSHH
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEee--ccCCCCHHHHHHHHHHHHHhcCCCeeEEE-------ECCCc
Confidence 38888875433221 245667666 4433221 234556676666665554 4 67899998 34588
Q ss_pred HHHHHHHHHHHcCCc--c-eEEeecceE
Q 016159 363 IASGIVNAAKQVSAL--D-CFGFHSNYF 387 (394)
Q Consensus 363 vA~gii~a~~~~~~~--~-~~~~~~~~~ 387 (394)
+|.|+++++++.+++ + +.+|-++..
T Consensus 208 ~A~g~~~al~~~G~~~di~vvg~D~~~~ 235 (332)
T 2rjo_A 208 MALGAIEALRAEGLAGQIPVTGMDGTQP 235 (332)
T ss_dssp HHHHHHHHHHHTTCBTTBCEECSBCCHH
T ss_pred hHHHHHHHHHHcCCCCCCEEEeecCCHH
Confidence 999999999999985 3 777766543
No 139
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=58.96 E-value=9.6 Score=34.28 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecceE
Q 016159 330 EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
.+.+..+.+.+...|++++|| ...|.+|.|+++++++.++++ +.+|-++.+
T Consensus 166 ~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~~ 221 (276)
T 3jy6_A 166 SEVHQRLTQLITQNDQKTVAF-------ALKERWLLEFFPNLIISGLIDNQTVTATGFADTDF 221 (276)
T ss_dssp HHHHHHHHHHHHSSSSCEEEE-------ESSHHHHHHHSHHHHHSSSCCSSSEEEEEBCCCST
T ss_pred cHHHHHHHHHHhcCCCCcEEE-------EeCcHHHHHHHHHHHHcCCCCCCcEEEEEECChHH
Confidence 345556677777789999999 456899999999999999874 777766543
No 140
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=55.61 E-value=3.4 Score=38.70 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=55.4
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~ 365 (394)
.+|+++..-.+.. -...+.+..+|.+....+ +-|+.+.+.-+++++-+++.|++++|| ...|.+|-
T Consensus 173 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~ai~-------~~~d~~A~ 244 (330)
T 3ctp_A 173 RKILHIKGPEVFEATELRYKGFLDGARAKDLEIDFIE-FQHDFQVKMLEEDINSMKDIVNYDGIF-------VFNDIAAA 244 (330)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEE-CSSSCCGGGGGCCCTTGGGGGGSSEEE-------ESSHHHHH
T ss_pred CeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcceeE-EcCCCCHHHHHHHHHHHhcCCCCcEEE-------ECCHHHHH
Confidence 4888886543321 234577777776543222 234445554445544444337789998 33588999
Q ss_pred HHHHHHHHcCCcc-----eEEeecceE
Q 016159 366 GIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 366 gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
|+++++++.++++ +.+|-++.+
T Consensus 245 g~~~al~~~G~~vP~disvvg~D~~~~ 271 (330)
T 3ctp_A 245 TVMRALKKRGVSIPQEVQIIGFDNSFI 271 (330)
T ss_dssp HHHHHHHHTTCCTTTTCEEECSBCCTH
T ss_pred HHHHHHHHcCCCCCCCeEEEEECChHH
Confidence 9999999999864 677766543
No 141
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=55.16 E-value=11 Score=33.57 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHH-HHhcCC-CccEEEEEccCCCCChHHHHHHHHHHHHHcCC--c-c-eEEeecceE
Q 016159 326 GNASEGQVVEAFK-ILTSDE-KVKAILVNIFGGIMKCDVIASGIVNAAKQVSA--L-D-CFGFHSNYF 387 (394)
Q Consensus 326 G~a~~~~~~~a~~-~~l~~~-~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~--~-~-~~~~~~~~~ 387 (394)
++.+.+..+++++ ++.+.| .+++|| ...|.+|.|+++++++.++ + + +.+|-++.+
T Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~vp~di~vvg~d~~~~ 219 (272)
T 3o74_A 159 EAFSRECGQRLMQQLIDDLGGLPDALV-------TTSYVLLQGVFDTLQARPVDSRQLQLGTFGDNQL 219 (272)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCCSEEE-------ESSHHHHHHHHHHHHTSCGGGCCCEEEEESCCGG
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCcEEE-------EeCchHHHHHHHHHHHcCCCccceEEEEeCChHH
Confidence 4455666666655 444567 799999 3468899999999999996 2 2 777766543
No 142
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=53.99 E-value=31 Score=31.45 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=53.2
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHH
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
++|+++..-.+.. -...+.+...|.+.... .-++.+.+..+++++ ++.+.|++++||. ..|.+|
T Consensus 124 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 194 (313)
T 2h3h_A 124 GKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDI--LNDEEDGARAVSLAEAALNAHPDLDAFFG-------VYAYNG 194 (313)
T ss_dssp SEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEE--EECSSCHHHHHHHHHHHHHHCTTCCEEEE-------CSTTHH
T ss_pred CEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEe--ecCCCCHHHHHHHHHHHHHHCcCceEEEE-------cCCCcc
Confidence 5888886543321 12345565555443221 224556666666554 4555789999992 346789
Q ss_pred HHHHHHHHHcCCc--c-eEEeecce
Q 016159 365 SGIVNAAKQVSAL--D-CFGFHSNY 386 (394)
Q Consensus 365 ~gii~a~~~~~~~--~-~~~~~~~~ 386 (394)
.|+++|+++.++. + +.+|-++.
T Consensus 195 ~g~~~al~~~G~p~dv~vvg~d~~~ 219 (313)
T 2h3h_A 195 PAQALVVKNAGKVGKVKIVCFDTTP 219 (313)
T ss_dssp HHHHHHHHHTTCTTTSEEEEECCCH
T ss_pred HHHHHHHHHcCCCCCeEEEEeCCCH
Confidence 9999999999853 2 67776553
No 143
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=53.10 E-value=26 Score=31.99 Aligned_cols=87 Identities=13% Similarity=0.095 Sum_probs=54.8
Q ss_pred CceeEEecChhHH------HHHHHHHHHcCCCcc-ceee--cCCCCCHHHHHHHHHHHh-cC-CCccEEEEEccCCCCCh
Q 016159 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPA-NFLD--VGGNASEGQVVEAFKILT-SD-EKVKAILVNIFGGIMKC 360 (394)
Q Consensus 292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~a-NflD--~gG~a~~~~~~~a~~~~l-~~-~~v~~i~vni~ggi~~~ 360 (394)
++|+++..-.+.. -...+.+..+|..|. .+.+ +.++.+.+..+++++-++ +. |++++|| ...
T Consensus 124 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-------~~~ 196 (313)
T 3m9w_A 124 GNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVV-------ASN 196 (313)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTCCCEEE-------ESS
T ss_pred CcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCCeeEEE-------ECC
Confidence 3888886443322 234567776632221 1111 245556777776666555 45 8999999 345
Q ss_pred HHHHHHHHHHHHHcCCcc---eEEeecc
Q 016159 361 DVIASGIVNAAKQVSALD---CFGFHSN 385 (394)
Q Consensus 361 d~vA~gii~a~~~~~~~~---~~~~~~~ 385 (394)
|.+|.|+++|+++.+++. +.+|-++
T Consensus 197 d~~a~g~~~al~~~G~~~di~vig~d~~ 224 (313)
T 3m9w_A 197 DATAGGAIQALSAQGLSGKVAISGQDAD 224 (313)
T ss_dssp HHHHHHHHHHHHTTTCTTTSEECCCSCC
T ss_pred CchHHHHHHHHHHcCCCCCcEEEecCCC
Confidence 889999999999998753 5565543
No 144
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=51.67 E-value=21 Score=32.04 Aligned_cols=87 Identities=13% Similarity=0.142 Sum_probs=52.3
Q ss_pred ceeEEecChhHH-----HHHHHHHHHcCCCcc--ceeecCCCCCHHH-HHHHHHHHhcCCC--ccEEEEEccCCCCChHH
Q 016159 293 EIGCMVNGAGLA-----MATMDIIKLHGGTPA--NFLDVGGNASEGQ-VVEAFKILTSDEK--VKAILVNIFGGIMKCDV 362 (394)
Q Consensus 293 ~Ig~~~nGaGl~-----m~t~D~i~~~gg~~a--NflD~gG~a~~~~-~~~a~~~~l~~~~--v~~i~vni~ggi~~~d~ 362 (394)
+|+++..-.... -...+.+..+|..+. ...+.......+. +..+-+++.+.|+ +++|| ...|.
T Consensus 139 ~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-------~~~d~ 211 (298)
T 3tb6_A 139 HMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-------CYNDE 211 (298)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-------CSSHH
T ss_pred cEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-------EeCcH
Confidence 666665433311 124577777776532 2333322111111 3344556666777 99999 45689
Q ss_pred HHHHHHHHHHHcCCcc-----eEEeecce
Q 016159 363 IASGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 363 vA~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
+|.|+++++++.++++ +.+|-++.
T Consensus 212 ~a~g~~~al~~~g~~vP~di~vvg~d~~~ 240 (298)
T 3tb6_A 212 IALKVIDMLREMDLKVPEDMSIVGYDDSH 240 (298)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEECSBCCT
T ss_pred HHHHHHHHHHHcCCCCCCceEEEecCCcH
Confidence 9999999999999874 66665543
No 145
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=50.74 E-value=38 Score=31.17 Aligned_cols=87 Identities=20% Similarity=0.114 Sum_probs=54.3
Q ss_pred CceeEEecChhHHH------HHHHHHHHc-CCCccceeecCCCCCHHHHHHHHHH-HhcCCCccEEEEEccCCCCChHHH
Q 016159 292 GEIGCMVNGAGLAM------ATMDIIKLH-GGTPANFLDVGGNASEGQVVEAFKI-LTSDEKVKAILVNIFGGIMKCDVI 363 (394)
Q Consensus 292 G~Ig~~~nGaGl~m------~t~D~i~~~-gg~~aNflD~gG~a~~~~~~~a~~~-~l~~~~v~~i~vni~ggi~~~d~v 363 (394)
++|+++..-.+... ...+.+..+ |.+.... .-++.+.+..+++++- +.+.|++++|| ...|.+
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~aI~-------~~nd~~ 199 (325)
T 2x7x_A 129 GNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDK--ADAAWERGPAEIEMDSMLRRHPKIDAVY-------AHNDRI 199 (325)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEEE--EECTTSHHHHHHHHHHHHHHCSCCCEEE-------ESSTTH
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEee--ecCCCCHHHHHHHHHHHHHhCCCCCEEE-------ECCCch
Confidence 38888865433221 235666666 4332221 2345566666665554 44578899999 335678
Q ss_pred HHHHHHHHHHcCCc--c-eEEeecceE
Q 016159 364 ASGIVNAAKQVSAL--D-CFGFHSNYF 387 (394)
Q Consensus 364 A~gii~a~~~~~~~--~-~~~~~~~~~ 387 (394)
|-|+++++++.++. + +.+|-++..
T Consensus 200 A~g~~~al~~~Gip~dv~vig~D~~~~ 226 (325)
T 2x7x_A 200 APGAYQAAKMAGREKEMIFVGIDALPG 226 (325)
T ss_dssp HHHHHHHHHHTTCTTSSEEEEEECCCS
T ss_pred HHHHHHHHHHcCCCCCeEEEEECCCcc
Confidence 99999999999863 2 778776653
No 146
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=49.32 E-value=6.8 Score=35.18 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecce
Q 016159 329 SEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNY 386 (394)
Q Consensus 329 ~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~ 386 (394)
+.+..+++ +.+.|++++|| ...|.+|.|+++++++.++++ +.+|-++.
T Consensus 164 ~~~~~~~~---l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~ 216 (277)
T 3e61_A 164 DNDKKFID---LIKELSIDSII-------CSNDLLAINVLGIVQRYHFKVPAEIQIIGYDNIP 216 (277)
T ss_dssp GSHHHHHH---HHHHHTCCEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCG
T ss_pred CHHHHHHH---hhcCCCCCEEE-------ECCcHHHHHHHHHHHHcCCCCCCceEEEeeCCch
Confidence 33444444 55678899999 446899999999999999864 66665554
No 147
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=47.18 E-value=26 Score=31.11 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=36.1
Q ss_pred ecCCCCC---HHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 323 DVGGNAS---EGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 323 D~gG~a~---~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
-++|..+ .+.+.+.++-+.++++++.|++ |.|||-. .-+..|.++++.++.++
T Consensus 31 ~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v---~a~~~I~~~i~~~~~pV 88 (208)
T 2cby_A 31 FLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSI---SAGMAIYDTMVLAPCDI 88 (208)
T ss_dssp EECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHHCSSCE
T ss_pred EEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCH---HHHHHHHHHHHhcCCCE
Confidence 3444444 4556667777777777776544 9999964 33578899999987655
No 148
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=46.47 E-value=35 Score=34.51 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=44.1
Q ss_pred CCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC---CHHHHHHHHHHHhcccccccccC
Q 016159 46 VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV---KKEEVEDLAGKMLGQILVTKQTG 122 (394)
Q Consensus 46 vp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~---s~ee~~~a~~~~l~~~l~~~q~~ 122 (394)
..+.+.+.++++...+.+.+ ..+|+||....| |+ ||.+. |.+|..+..+++....
T Consensus 343 ~VpT~~c~~~~~~~~vl~~l----~~lViKp~~g~g--g~---------gv~iG~~~s~~e~~~~~~~i~~~p------- 400 (474)
T 3n6x_A 343 NVPTYQLSKADDLKYVLDNL----AELVVKEVQGSG--GY---------GMLVGPAASKQELEDFRQRILANP------- 400 (474)
T ss_dssp ECCCEETTSHHHHHHHHHSG----GGEEEEECCCE----------------EEGGGCCHHHHHHHHHHHHHSG-------
T ss_pred CCCceecCCHHHHHHHHhch----hheEEEecCCCC--CC---------ceEECCcCCHHHHHHHHHHHHhCC-------
Confidence 34556678899988888887 479999965333 33 67776 8888888777775432
Q ss_pred CCCcccceEEEEeeeCC
Q 016159 123 PQGKIVSKVYLCEKLSL 139 (394)
Q Consensus 123 ~~g~~v~~vlVee~v~~ 139 (394)
..++.||+++.
T Consensus 401 ------~~yIaQe~v~l 411 (474)
T 3n6x_A 401 ------ANYIAQPTLAL 411 (474)
T ss_dssp ------GGEEEEECCCC
T ss_pred ------CCEEEeeccCC
Confidence 35777777754
No 149
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=46.05 E-value=89 Score=28.53 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=53.5
Q ss_pred CCceeEEecChhH--HHHHHHHHHHcCCCccceeecCCC-CCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHH
Q 016159 291 DGEIGCMVNGAGL--AMATMDIIKLHGGTPANFLDVGGN-ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGI 367 (394)
Q Consensus 291 ~G~Ig~~~nGaGl--~m~t~D~i~~~gg~~aNflD~gG~-a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gi 367 (394)
.++||+++.-... --...+.+..+|-. --..-+-|+ .++++-+++.+-+++. ++++|| ...|.+|-|+
T Consensus 126 ~~~Ig~i~g~~~~~r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~-~~daI~-------~~~D~~a~Gv 196 (296)
T 2hqb_A 126 THKVGVIAAFPWQPEVEGFVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKE-QVDVFY-------PAGDGYHVPV 196 (296)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTT-TCCEEE-------CCCTTTHHHH
T ss_pred CCeEEEEcCcCchhhHHHHHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHC-CCcEEE-------ECCCCCCHHH
Confidence 3789998643222 22345666666643 111223444 4677777777767664 588988 5567889999
Q ss_pred HHHHHHcCCcceEEeec
Q 016159 368 VNAAKQVSALDCFGFHS 384 (394)
Q Consensus 368 i~a~~~~~~~~~~~~~~ 384 (394)
++|+++.++. +.+|.+
T Consensus 197 ~~a~~e~Gv~-viG~D~ 212 (296)
T 2hqb_A 197 VEAIKDQGDF-AIGYVG 212 (296)
T ss_dssp HHHHHHHTCE-EEEEES
T ss_pred HHHHHHcCCE-EEEEec
Confidence 9999999843 555554
No 150
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=45.63 E-value=29 Score=30.34 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 330 EGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
.+.+.+.++.+.++++++.|++ |.|||-. .-+..|.++++.++.++
T Consensus 40 a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v---~a~~~I~~~i~~~~~pV 87 (193)
T 1yg6_A 40 ANLIVAQMLFLEAENPEKDIYLYINSPGGVI---TAGMSIYDTMQFIKPDV 87 (193)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcCCCH---HHHHHHHHHHHhcCCCE
Confidence 5667777777766666776544 9999975 33478889999987655
No 151
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=44.94 E-value=39 Score=30.22 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHH-HhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCC-cc-eEEeecce
Q 016159 326 GNASEGQVVEAFKI-LTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSA-LD-CFGFHSNY 386 (394)
Q Consensus 326 G~a~~~~~~~a~~~-~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~-~~-~~~~~~~~ 386 (394)
++.+.+..+++++- +.+.|++++|| ...|.+|.|+++++++.+. ++ +.+|-++.
T Consensus 171 ~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~dv~vig~d~~~ 227 (290)
T 2fn9_A 171 AEFDRDTAYKVTEQILQAHPEIKAIW-------CGNDAMALGAMKACEAAGRTDIYIFGFDGAE 227 (290)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTCCEEE-------ESSHHHHHHHHHHHHHTTCTTCEEECCBCCH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEE-------ECCchHHHHHHHHHHHCCCCCeEEEEeCCCH
Confidence 34455655555554 44568899998 3358899999999999987 33 66665543
No 152
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=44.92 E-value=44 Score=30.68 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc--c-eEEeecc
Q 016159 326 GNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL--D-CFGFHSN 385 (394)
Q Consensus 326 G~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~--~-~~~~~~~ 385 (394)
++-+.+..+++++ ++.+.|++++|| ...|.+|.|+++|+++.+ + + +.++-++
T Consensus 169 ~~~~~~~~~~~~~~ll~~~~~~~aI~-------~~nD~~A~g~~~al~~~G-~~dv~VvG~D~~ 224 (316)
T 1tjy_A 169 GYNDATKSLQTAEGIIKAYPDLDAII-------APDANALPAAAQAAENLK-RNNLAIVGFSTP 224 (316)
T ss_dssp CTTCHHHHHHHHHHHHHHCSSCCEEE-------ECSTTHHHHHHHHHHHTT-CCSCEEEEBCCH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCEEE-------ECCCccHHHHHHHHHHcC-CCCEEEEEeCCC
Confidence 3456666666555 455578899999 345789999999999998 4 3 6666553
No 153
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=42.86 E-value=44 Score=32.70 Aligned_cols=77 Identities=10% Similarity=-0.011 Sum_probs=50.7
Q ss_pred ceeEEecChhHH--HH------HHHHHHHcCCCccceeecCCCCCHHHHHHHH-HHHh--------cCCCccEEEEEccC
Q 016159 293 EIGCMVNGAGLA--MA------TMDIIKLHGGTPANFLDVGGNASEGQVVEAF-KILT--------SDEKVKAILVNIFG 355 (394)
Q Consensus 293 ~Ig~~~nGaGl~--m~------t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~-~~~l--------~~~~v~~i~vni~g 355 (394)
+|++++.--... .. ..+++.++|.+. ++... ++++.+.-+++. +++. +.+.+.+||
T Consensus 158 ~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~-~~~~~-~d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIF----- 230 (371)
T 3qi7_A 158 AFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPF-VQVNT-PNINTEEDKNKVKQFLNEDIEKQVKKYGKDINVF----- 230 (371)
T ss_dssp CEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCE-EEEEE-CCCSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEE-----
T ss_pred EEEEEeccccccchhHHHHHHHHHHHHHHcCCCc-eeecC-CCCchHHHHHHHHHHHhccccchhhccCCCcEEE-----
Confidence 777776433212 12 568888888743 44433 356655555544 4444 335678999
Q ss_pred CCCChHHHHHHHHHHHHHcCCcc
Q 016159 356 GIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 356 gi~~~d~vA~gii~a~~~~~~~~ 378 (394)
+..|.+|.|+++++++.++++
T Consensus 231 --atND~mAiG~ikal~e~Gi~V 251 (371)
T 3qi7_A 231 --GVNEYMDEVILTKALELKYIV 251 (371)
T ss_dssp --ESSHHHHHHHHHHHHHHCCBB
T ss_pred --ECCHHHHHHHHHHHHHcCCcc
Confidence 667999999999999999876
No 154
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=42.08 E-value=30 Score=31.65 Aligned_cols=45 Identities=27% Similarity=0.233 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHhc----CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc
Q 016159 326 GNASEGQVVEAFKILTS----DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL 377 (394)
Q Consensus 326 G~a~~~~~~~a~~~~l~----~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~ 377 (394)
++-+.+.-+++++-+++ +|++++|| ...|.+|-|+++|+++.+++
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-------~~nd~~A~g~~~al~~~g~~ 229 (330)
T 3uug_A 181 LRWDPATAQARMDNLLSAYYTDAKVDAVL-------SPYDGLSIGIISSLKGVGYG 229 (330)
T ss_dssp GGGCHHHHHHHHHHHHHHHCSSSCCCEEE-------CSSHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCeEEEE-------ECCCchHHHHHHHHHHcCCC
Confidence 34455666666665555 58999999 55689999999999999985
No 155
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=41.74 E-value=37 Score=32.49 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHh
Q 016159 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDA 65 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~l 65 (394)
-+.++..+.|++.|+|+++ ..++.+.+++.+..+.+
T Consensus 232 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~ 268 (318)
T 1b04_A 232 ASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEW 268 (318)
T ss_dssp CBHHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCcceEeCCHHHHHHHHHHH
Confidence 4677889999999999985 56889999998888766
No 156
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=41.25 E-value=35 Score=32.75 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHh
Q 016159 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDA 65 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~l 65 (394)
-+.++..+.|++.|+||++ ..+|.+.+|+.+..+.+
T Consensus 236 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~ 272 (322)
T 3uq8_A 236 TTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDI 272 (322)
T ss_dssp SBHHHHHHHHHHTTCCCCTTCEEEESHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCCcEEeCCHHHHHHHHHHH
Confidence 4678899999999999986 57789999998888776
No 157
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=40.54 E-value=38 Score=30.44 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc--c-eEEeecc
Q 016159 325 GGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL--D-CFGFHSN 385 (394)
Q Consensus 325 gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~--~-~~~~~~~ 385 (394)
.++.+.+..+++++ ++.++|++++|| ...|.+|.|+++++++.+++ + +.+|-++
T Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~~dv~vig~d~~ 225 (303)
T 3d02_A 168 PVAESVDDSRRTTLDLMKTYPDLKAVV-------SFGSNGPIGAGRAVKEKRAKNKVAVYGMMIP 225 (303)
T ss_dssp SCTTCHHHHHHHHHHHHHHCTTEEEEE-------ESSTTHHHHHHHHHHHTTCTTTCEEEECCCH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCEEE-------EeCCcchhHHHHHHHhcCCCCCeEEEEeCCC
Confidence 44556666666555 455578899998 23467899999999999984 3 6777654
No 158
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=40.24 E-value=29 Score=31.14 Aligned_cols=71 Identities=10% Similarity=-0.125 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCccc-eeecCCCCCHHH-HHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCC-cc-eEEe
Q 016159 307 TMDIIKLHGGTPAN-FLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSA-LD-CFGF 382 (394)
Q Consensus 307 t~D~i~~~gg~~aN-flD~gG~a~~~~-~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~-~~-~~~~ 382 (394)
..+.+..+|...-. ....+ +.+.+. +..+.+++.+.|++++||. ..|. |.|+++++++.++ ++ +.+|
T Consensus 161 f~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~-a~g~~~al~~~g~~di~vig~ 231 (304)
T 3gbv_A 161 FRQYMQEHHPACNILELNLH-ADLNIEDSRMLDDFFREHPDVKHGIT-------FNSK-VYIIGEYLQQRRKSDFSLIGY 231 (304)
T ss_dssp HHHHHHHHCTTSEEEEEEEE-SSCSSCHHHHHHHHHHHCTTCCEEEE-------SSSC-THHHHHHHHHTTCCSCEEEEE
T ss_pred HHHHHHhhCCCcEEEEeeec-CCCHHHHHHHHHHHHHhCCCeEEEEE-------cCcc-hHHHHHHHHHcCCCCcEEEEe
Confidence 45777777754321 11122 223333 3344556666889999993 3356 7899999999998 33 7777
Q ss_pred ecce
Q 016159 383 HSNY 386 (394)
Q Consensus 383 ~~~~ 386 (394)
-++.
T Consensus 232 d~~~ 235 (304)
T 3gbv_A 232 DLLE 235 (304)
T ss_dssp SCCH
T ss_pred CCCH
Confidence 6554
No 159
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=39.42 E-value=13 Score=34.88 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=44.2
Q ss_pred cChhHHHHHHHHHHHcCCCccceeec-CCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCC---hHHHHHHHHHHHHH
Q 016159 299 NGAGLAMATMDIIKLHGGTPANFLDV-GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMK---CDVIASGIVNAAKQ 373 (394)
Q Consensus 299 nGaGl~m~t~D~i~~~gg~~aNflD~-gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~---~d~vA~gii~a~~~ 373 (394)
.|.|.++.+++.|...--.+--++=. ||=.+++.++.|+++ +.++++||. +|++ ...+|+.+++|++.
T Consensus 167 IGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeL-----GAdgVlVgS--AI~~a~dP~~ma~af~~Av~a 238 (265)
T 1wv2_A 167 IGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMEL-----GCEAVLMNT--AIAHAKDPVMMAEAMKHAIVA 238 (265)
T ss_dssp TTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHH-----TCSEEEESH--HHHTSSSHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHc-----CCCEEEECh--HHhCCCCHHHHHHHHHHHHHH
Confidence 34454444555554322122233333 466789999999997 678999754 6666 78889999998764
No 160
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=39.13 E-value=40 Score=32.45 Aligned_cols=88 Identities=8% Similarity=0.000 Sum_probs=53.5
Q ss_pred ceeEEecChhHH--------HHHHHHHHHcCCCcccee-ecCCCCCHHHHHHHH-HHHhcCCCccEEEEEccCCCCChHH
Q 016159 293 EIGCMVNGAGLA--------MATMDIIKLHGGTPANFL-DVGGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDV 362 (394)
Q Consensus 293 ~Ig~~~nGaGl~--------m~t~D~i~~~gg~~aNfl-D~gG~a~~~~~~~a~-~~~l~~~~v~~i~vni~ggi~~~d~ 362 (394)
+|++++.-.... -...+++..+|..+.-+. +.....+.+..++++ +++.+.|++++|| ...|.
T Consensus 141 ~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-------~~nD~ 213 (412)
T 4fe7_A 141 RFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGII-------AVTDA 213 (412)
T ss_dssp EEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEE-------ESSHH
T ss_pred eEEEecccccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEE-------EEecH
Confidence 788775443221 124566666665432111 111222444444444 4555678999999 45689
Q ss_pred HHHHHHHHHHHcCCcc-----eEEeecceE
Q 016159 363 IASGIVNAAKQVSALD-----CFGFHSNYF 387 (394)
Q Consensus 363 vA~gii~a~~~~~~~~-----~~~~~~~~~ 387 (394)
+|-|+++++++.++++ +.+|-++.+
T Consensus 214 ~A~g~~~al~~~G~~vP~disvig~D~~~~ 243 (412)
T 4fe7_A 214 RARHILQVCEHLHIPVPEKLCVIGIDNEEL 243 (412)
T ss_dssp HHHHHHHHHHHHTCCTTTTSEEEESSCCSC
T ss_pred HHHHHHHHHHHcCCCCCceEEEEeecchhh
Confidence 9999999999999864 777766543
No 161
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=38.51 E-value=39 Score=32.53 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHhC
Q 016159 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDAF 66 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~lg 66 (394)
-+.++..+.|++.|+|+++ ..++.+.+|+.+..+.+.
T Consensus 247 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~ 284 (328)
T 1zau_A 247 ATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWG 284 (328)
T ss_dssp SBHHHHHHHHHTTTCCCCCCCCCBCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHHHH
Confidence 3677899999999999964 558899999999888874
No 162
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=36.51 E-value=34 Score=35.47 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCcceEEeecc
Q 016159 326 GNASEGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSN 385 (394)
Q Consensus 326 G~a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~~~~~~~~~ 385 (394)
+.+..+.+.++++-+..|+++++|++ |.+||-..........++.+++.+..++-.++|.
T Consensus 320 ~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~~i~~l~~~~kPVia~v~g~ 381 (593)
T 3bf0_A 320 GNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGM 381 (593)
T ss_dssp TSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred chhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 45667899999999999999999988 7788755432222334556666544445455553
No 163
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=36.11 E-value=38 Score=32.69 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHh
Q 016159 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDA 65 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~l 65 (394)
-+.++..+.|++.|+|+++ ..++.+.+|+.+..+.+
T Consensus 238 ~t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~ 274 (332)
T 1ta8_A 238 KTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEY 274 (332)
T ss_dssp SBHHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCcceEeCCHHHHHHHHHHH
Confidence 4677899999999999985 56899999998888766
No 164
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=36.07 E-value=1.3e+02 Score=27.40 Aligned_cols=85 Identities=11% Similarity=0.110 Sum_probs=56.4
Q ss_pred eEEccCCceeEEecC-hhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHH
Q 016159 286 NYIGLDGEIGCMVNG-AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (394)
Q Consensus 286 ~y~~l~G~Ig~~~nG-aGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA 364 (394)
+|-.|+|++.+++.| .|++-++.-.+...|.+... +|. +.++..+..+-+.+ .+.+++. +..=+++.+.+.
T Consensus 1 Sy~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~-~~~----~~~~~~~~~~~i~~-~g~~~~~--~~~Dvt~~~~v~ 72 (254)
T 4fn4_A 1 SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVA-VEL----LEDRLNQIVQELRG-MGKEVLG--VKADVSKKKDVE 72 (254)
T ss_dssp CCGGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EES----CHHHHHHHHHHHHH-TTCCEEE--EECCTTSHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE-EEC----CHHHHHHHHHHHHh-cCCcEEE--EEccCCCHHHHH
Confidence 377899999998765 57899999999988876543 333 45666666665544 3445554 334567777777
Q ss_pred HHHHHHHHHcC-Ccc
Q 016159 365 SGIVNAAKQVS-ALD 378 (394)
Q Consensus 365 ~gii~a~~~~~-~~~ 378 (394)
+.+-++.++++ ++.
T Consensus 73 ~~~~~~~~~~G~iDi 87 (254)
T 4fn4_A 73 EFVRRTFETYSRIDV 87 (254)
T ss_dssp HHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHcCCCCE
Confidence 66666666654 444
No 165
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=35.16 E-value=66 Score=28.74 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCCccE--EEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 330 EGQVVEAFKILTSDEKVKA--ILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~--i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
.+.+...+..+..++. +. +.||.|||-. .-+..|.++++.++.++
T Consensus 53 a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv---~a~~~I~~~i~~~~~pV 99 (215)
T 2f6i_A 53 ADELISQLLYLDNINH-NDIKIYINSPGGSI---NEGLAILDIFNYIKSDI 99 (215)
T ss_dssp HHHHHHHHHHHHHHCC-SCEEEEEEECCBCH---HHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHhCCC-CcEEEEEECCCCCH---HHHHHHHHHHHhcCCCE
Confidence 3555556665544333 54 4459999975 33578999999988766
No 166
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=34.79 E-value=61 Score=28.71 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCCccE--EEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 330 EGQVVEAFKILTSDEKVKA--ILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~--i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
.+.+...+..+-+++..+. +.||.+||-. .-+..|.++++.++.++
T Consensus 44 a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v---~~~~~I~~~i~~~~~~v 91 (201)
T 3p2l_A 44 ANLVIAQLLFLESEDPDKDIYFYINSPGGMV---TAGMGVYDTMQFIKPDV 91 (201)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCCCCH---HHHHHHHHHHHHhCCCe
Confidence 3555556666655555565 4459999975 33478899999987766
No 167
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase; HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Probab=32.35 E-value=77 Score=30.56 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcC------CCcc-EEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEE
Q 016159 332 QVVEAFKILTSD------EKVK-AILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFC 388 (394)
Q Consensus 332 ~~~~a~~~~l~~------~~v~-~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~ 388 (394)
-+.+.++.|+.+ ++-+ ++|||-.||.+.-.. +++.+.+.+++.++++...+-|+|+.
T Consensus 231 l~~~m~~~ll~~l~~~~~~gd~v~vlVNgLG~t~~~El~i~~~~v~~~L~~~gi~v~r~~vG~~~T 296 (336)
T 2iu4_A 231 IAIELVNKLKAEINWQKKANKNYILLVNGLGSTTLMELYSFQYDVMRLLELEGLSVKFCKVGNLMT 296 (336)
T ss_dssp HHHHHHHHHHHHHCGGGCSCCEEEEEEEECBSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEECSSC
T ss_pred HHHHHHHHHHhhCccccCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHHCCCeEEEEeeecccC
Confidence 344555555442 2333 367799999666543 56889999999999999999999974
No 168
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=32.34 E-value=33 Score=30.87 Aligned_cols=50 Identities=4% Similarity=0.013 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc--c-eEEee
Q 016159 326 GNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL--D-CFGFH 383 (394)
Q Consensus 326 G~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~--~-~~~~~ 383 (394)
++.+.+..+++++-+++.|++++ |. ..|.+|.|+++++++.+++ + +.+|.
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~a-i~-------~~d~~a~g~~~al~~~g~~~di~vvg~d 227 (304)
T 3o1i_D 175 ADNDKELQRNLVQRVIDMGNIDY-IV-------GSAVAIEAAISELRSADKTHDIGLVSVY 227 (304)
T ss_dssp CCSCHHHHHHHHHHHHHHSCCSE-EE-------ECHHHHHHHHHHHTTTTCGGGSEEBCSS
T ss_pred CCCcHHHHHHHHHHHHcCCCCCE-EE-------ecCcchHHHHHHHHhcCCCCCeEEEEeC
Confidence 34466666666554448889998 52 2478999999999999984 3 55543
No 169
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=31.80 E-value=66 Score=28.72 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 330 EGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
.+.+.++++.+.+++.++.|.+ |.+||... -+..|.++++.++..+
T Consensus 59 a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~---ag~~I~~~i~~~~~pV 106 (218)
T 1y7o_A 59 ANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVS---AGLAIVDTMNFIKADV 106 (218)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEEEECCBCHH---HHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcCCCHH---HHHHHHHHHHhcCCCE
Confidence 4666677777777777777544 99999653 2467888888887665
No 170
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=31.12 E-value=1.1e+02 Score=28.59 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=30.0
Q ss_pred ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (394)
Q Consensus 320 NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ 354 (394)
--.++..+.+.+.+.+.++-+..||+|.+|+|-.|
T Consensus 65 ~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlP 99 (281)
T 2c2x_A 65 IRRDLPADISTATLNETIDELNANPDCTGYIVQLP 99 (281)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCC
Confidence 34577889999999999999999999999999543
No 171
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=31.04 E-value=48 Score=31.72 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHh
Q 016159 31 HEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDA 65 (394)
Q Consensus 31 ~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~l 65 (394)
+.++..+.|++.|+|+.+ ..++.+.+|+.+..+.+
T Consensus 231 t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~ 266 (318)
T 3jsl_A 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKW 266 (318)
T ss_dssp BHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCcCCcceEeCCHHHHHHHHHHH
Confidence 567889999999999865 57889999998888766
No 172
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=30.85 E-value=69 Score=28.40 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCCccE--EEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 330 EGQVVEAFKILTSDEKVKA--ILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~--i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
.+.+...+..+.+++..+. +.||.+||-. .-+..|.++++.++.++
T Consensus 41 a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v---~~~~~I~~~i~~~~~~V 88 (203)
T 3qwd_A 41 ANSIVSQLLFLQAQDSEKDIYLYINSPGGSV---TAGFAIYDTIQHIKPDV 88 (203)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH---HHHHHHHHHHHHhcCCc
Confidence 3555566666666665665 4459999975 33578889999987666
No 173
>3ct4_A PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DHAK; dihydroxyacetone kinase subunit, tranferase; 2.50A {Lactococcus lactis subsp}
Probab=29.73 E-value=82 Score=30.33 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcC----CCcc-EEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEE
Q 016159 331 GQVVEAFKILTSD----EKVK-AILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFC 388 (394)
Q Consensus 331 ~~~~~a~~~~l~~----~~v~-~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~ 388 (394)
+-+.+.++.|+.+ ++-+ ++|||-.||.+.-+. +++.+.+.+++.++++...+-|+|+.
T Consensus 235 el~~~m~~~ll~~~~~~~gd~v~vlVNgLG~t~~~El~i~~~~v~~~L~~~gi~v~r~~vG~~~T 299 (332)
T 3ct4_A 235 ELATELVGKLKEEFKFEAGQKYGILVNGMGATPLMEQFIFMNDVAKLLTEENIEILFKKVGNYMT 299 (332)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEEECBSSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECSSC
T ss_pred HHHHHHHHHHHhhcCcCCCCeEEEEEECCCCcCHHHHHHHHHHHHHHHHHCCCeEEEEEeecccc
Confidence 4455667777552 3333 467799999666443 56889999999999999999999974
No 174
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=29.70 E-value=44 Score=26.72 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHhcCCCccEEEE-EccCCCCCh-------HHHH---HHHHH----HHHHcCCcc---eEEeecceEEE
Q 016159 329 SEGQVVEAFKILTSDEKVKAILV-NIFGGIMKC-------DVIA---SGIVN----AAKQVSALD---CFGFHSNYFCL 389 (394)
Q Consensus 329 ~~~~~~~a~~~~l~~~~v~~i~v-ni~ggi~~~-------d~vA---~gii~----a~~~~~~~~---~~~~~~~~~~~ 389 (394)
++..+.+.|+-|.+.|+|.+++| |--|...+. ...| ..++. .++++..+. |++++.-.+++
T Consensus 10 ~~~evEe~l~RI~~~kgV~G~iIln~~G~pIrSt~d~~~~~~yA~li~~L~~~A~~~vr~lDp~deL~fLRiRTkkhEi 88 (106)
T 2hz5_A 10 SMAEVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEI 88 (106)
T ss_dssp -----CHHHHHHHTSTTEEEEEEECTTCCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEcCCCCeEEEecCchHHHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeCCcEE
Confidence 34577889999999999999887 777755431 1223 22222 233444444 89998776654
No 175
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=28.95 E-value=81 Score=29.17 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=50.8
Q ss_pred ceeEEecChhHH-----HHHHHHHHHcCCCccceeecCCC-CCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHH
Q 016159 293 EIGCMVNGAGLA-----MATMDIIKLHGGTPANFLDVGGN-ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (394)
Q Consensus 293 ~Ig~~~nGaGl~-----m~t~D~i~~~gg~~aNflD~gG~-a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~g 366 (394)
+||+++.-.... -...+.+..+|-..--...+-|+ .++++-+++.+-+++. ++++|| ...|.+|-|
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~-~~daI~-------~~~d~~a~G 202 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDS-GVNVIF-------QVAGGTGNG 202 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHT-TCCEEE-------EECGGGHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHC-CCcEEE-------ECCCCCchH
Confidence 777775322111 12345555555432212223344 4667777777666664 478888 445678899
Q ss_pred HHHHHHHcCCc---c-eEEeecce
Q 016159 367 IVNAAKQVSAL---D-CFGFHSNY 386 (394)
Q Consensus 367 ii~a~~~~~~~---~-~~~~~~~~ 386 (394)
+++|+++.+++ + +.+|.++.
T Consensus 203 v~~a~~e~g~~P~dv~viG~D~~~ 226 (318)
T 2fqx_A 203 VIKEARDRRLNGQDVWVIGVDRDQ 226 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESCC
T ss_pred HHHHHHhhhhccCCcEEEEEecch
Confidence 99999996543 2 77776653
No 176
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A {Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A* 1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Probab=28.75 E-value=93 Score=30.31 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=33.6
Q ss_pred EEEEEccCCCCChHH--HHHHHHHHHHHcCCcceEEeecceEE
Q 016159 348 AILVNIFGGIMKCDV--IASGIVNAAKQVSALDCFGFHSNYFC 388 (394)
Q Consensus 348 ~i~vni~ggi~~~d~--vA~gii~a~~~~~~~~~~~~~~~~~~ 388 (394)
++|||-.||.+.-.. +++.+.+.+++.++++...+-|+|+.
T Consensus 289 ~vLVNgLG~T~~~El~iv~~~v~~~L~~~gi~v~r~~vG~y~T 331 (366)
T 1oi2_A 289 IALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCT 331 (366)
T ss_dssp EEEEEECBSCCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSC
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHHHCCCeEEEEeeecccC
Confidence 367799999665443 56889999999999999999999964
No 177
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=26.53 E-value=95 Score=29.03 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCCccEEE--EEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 330 EGQVVEAFKILTSDEKVKAIL--VNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 330 ~~~~~~a~~~~l~~~~v~~i~--vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
.+.+...+..+.++...|.|. ||.+||-. .-+..|.++++.++.++
T Consensus 96 a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV---~ag~aIyd~I~~~k~pV 143 (277)
T 1tg6_A 96 ASLVIAQLLFLQSESNKKPIHMYINSPGGVV---TAGLAIYDTMQYILNPI 143 (277)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHHSCSCE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCCCCH---HHHHHHHHHHHhcCCCE
Confidence 344444555544433456544 49999975 23478889999988666
No 178
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A {Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A* 1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Probab=26.48 E-value=45 Score=32.54 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=52.2
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCcc-------------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCC
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPA-------------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~a-------------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi 357 (394)
.|.+++++.||. |.+|+ -.-|+=-.|+++++.+|++.+.+.++|=-|+-|--|=+
T Consensus 53 ~~KValiSGGGS------------GHEPah~GfVG~GMLdaAv~G~VFaSPs~~qi~~ai~av~~g~GvL~ivkNYtGDv 120 (366)
T 1oi2_A 53 AGKVALLSGGGS------------GHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDI 120 (366)
T ss_dssp TTSCEEEEEEEE------------SSTTTTGGGBSBTSBSEEEEEEETSCCCHHHHHHHHHHHCCSSCEEEEEESSHHHH
T ss_pred CCcEEEEecCCc------------cccccccccccCCccceeeecccCCCCCHHHHHHHHHhhcCCCCEEEEeCCcHHHh
Confidence 388999987774 77775 66677899999999999999977765543333877878
Q ss_pred CChHHHHHHHHHHHHHcCCcc
Q 016159 358 MKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 358 ~~~d~vA~gii~a~~~~~~~~ 378 (394)
.|+++.|+- .+..++++
T Consensus 121 lNF~mA~E~----a~~eGi~v 137 (366)
T 1oi2_A 121 LNFETATEL----LHDSGVKV 137 (366)
T ss_dssp HHHHHHHHH----HHHTTCCE
T ss_pred hcHHHHHHH----HHhcCCcE
Confidence 888776553 23346665
No 179
>3ct4_A PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DHAK; dihydroxyacetone kinase subunit, tranferase; 2.50A {Lactococcus lactis subsp}
Probab=26.25 E-value=47 Score=32.02 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=51.9
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCcc-------------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCC
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPA-------------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~a-------------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi 357 (394)
+|.+++++.||. |.+|+ -.-|+=-.|+++++++|++.+.+.++|=-|+-|--|=+
T Consensus 45 ~~KValISGGGS------------GHEPahaGfVG~GMLdAAv~G~VFaSPs~~qi~~aikav~~g~GvL~ivkNYtGDv 112 (332)
T 3ct4_A 45 SGKVALVSGGGS------------GHEPAHAGFVGEGMLSAAVCGAIFTSPTPDQIYEAIKSADEGAGVLLIIKNYLGDV 112 (332)
T ss_dssp CSCCEEEEEEEE------------SSTTTTGGGBSBTSBSEEEEEEETCCCCHHHHHHHHHHHCCSSCEEEEEESCHHHH
T ss_pred CCcEEEEecCCc------------cccccccccccCCccceeeecccCCCCCHHHHHHHHHhhcCCCCEEEEeCCcHHHh
Confidence 489999988775 77775 55677789999999999999988766533333777777
Q ss_pred CChHHHHHHHHHHHHHcCCcc
Q 016159 358 MKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 358 ~~~d~vA~gii~a~~~~~~~~ 378 (394)
.|+++-|+- .+..++++
T Consensus 113 lNF~mAaE~----a~~eGi~v 129 (332)
T 3ct4_A 113 MNFEMAREM----AEMEEIKV 129 (332)
T ss_dssp HHHHHHHHH----HHHTTCCE
T ss_pred hcHHHHHHH----HHhcCCcE
Confidence 777775553 23336654
No 180
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=26.22 E-value=50 Score=32.66 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHcCCC----CCCceeeCC---------------HHHHHHHH----HHhCCCCCc-EEEEEeeecCCCC
Q 016159 29 NIHEYQGAELMAKYGIN----VPKGLAVAS---------------VDEVKKAI----QDAFPDHKE-LVVKSQILAGGRG 84 (394)
Q Consensus 29 ~L~E~~aK~lL~~~GIp----vp~~~~~~s---------------~eea~~~a----~~lg~~~~P-vVvK~q~~~ggRg 84 (394)
..++.-+|++-+-.||. .|-+..|.. .|+..+.. ++.|-...| |+||++. |.=|
T Consensus 213 ~~Y~~va~eFa~~~~IDPWlInp~F~~c~~vdF~~~~G~~~La~~Vd~lL~kIr~KY~eygI~~~PfV~VKADa--GTYG 290 (432)
T 3k1t_A 213 TAYDRVVEEFAPLIDIDPWLLNPYFDTCGGLDFHARLGEEQLAEKVDSLLAKIRRKYAEYGVKQEPFVIVKADA--GTYG 290 (432)
T ss_dssp HHHHHHHHHHHHHHTCCGGGGCCCEEEEECCCTTSSTTHHHHHHHHHHHHHHHHHHHHHHTCCSCCCEEEEEEC--GGGC
T ss_pred HHHHHHHHHHHHHhCCCcccccHhhhccCCcccCccccHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCC--CCCC
Confidence 36677889999999996 344444432 22222222 234422245 6899985 3233
Q ss_pred CCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeE
Q 016159 85 LGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEM 143 (394)
Q Consensus 85 K~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ 143 (394)
- ||..+ |.+|+...-++-..+-. ....|..++.|+|||-+. ..|.
T Consensus 291 M---------GImtV~s~~ev~~LNrK~RnKM~----~~Keg~~v~~VIIQEGV~-T~E~ 336 (432)
T 3k1t_A 291 M---------GIMTVKSADDVRDLNRKQRNKMS----VVKEGLKVSEVILQEGVY-TFEH 336 (432)
T ss_dssp E---------EEEEESSGGGGSSCCHHHHHHHH----CSSSSSCCCEEEEEECCC-CCEE
T ss_pred c---------eEEEecCHHHHHHHhHHhhhhhh----hccCCCccceEEEecCcc-hhhh
Confidence 3 68888 99988543222211110 113688999999999886 4453
No 181
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=25.64 E-value=1.4e+02 Score=26.69 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=25.2
Q ss_pred ccCCceeEEecCh---hHHHHHHHHHHHcCCCc
Q 016159 289 GLDGEIGCMVNGA---GLAMATMDIIKLHGGTP 318 (394)
Q Consensus 289 ~l~G~Ig~~~nGa---Gl~m~t~D~i~~~gg~~ 318 (394)
+|+|++.+++.++ |++.++.-.+...|-+.
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~V 35 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKL 35 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEE
Confidence 5789999998854 89999999999998653
No 182
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase; HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Probab=25.28 E-value=44 Score=32.23 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=48.1
Q ss_pred CCceeEEecChhHHHHHHHHHHHcCCCcc-------------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCC
Q 016159 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPA-------------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (394)
Q Consensus 291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~a-------------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi 357 (394)
+|.+++++.||. |.+|+ -.-|+=-.|+++++++|++.+.+.++|=-|+-|--|=+
T Consensus 41 ~~KValISGGGS------------GHEPahaGfVG~GMLdAAv~G~VFaSPs~~qi~~aikav~~g~GvL~ivkNYtGDv 108 (336)
T 2iu4_A 41 EKTVPIISGGGS------------GHEPAHVGYVGSGMLAAAVTGPLFIPPKSKNILKAIRQVNSGKGVFVIIKNFEADL 108 (336)
T ss_dssp SSSCCEEEEEEE------------SSTTTTGGGBSTTSBSEEEEEEETSCCCHHHHHHHHHHHCSSSCEEEEEESCHHHH
T ss_pred CCcEEEEecCCc------------cccccccccccCCccceeeecccCCCCCHHHHHHHHHhhcCCCCEEEEeCCcHHHh
Confidence 489999988775 77775 56677789999999999999988766533333777777
Q ss_pred CChHHHHH
Q 016159 358 MKCDVIAS 365 (394)
Q Consensus 358 ~~~d~vA~ 365 (394)
.|+++-|+
T Consensus 109 lNF~mAaE 116 (336)
T 2iu4_A 109 KEFNEAIK 116 (336)
T ss_dssp HHHHHHHH
T ss_pred hcHHHHHH
Confidence 78877555
No 183
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=25.21 E-value=1.8e+02 Score=27.26 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=44.7
Q ss_pred ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc--C---------------------------------CCCChHHHH
Q 016159 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF--G---------------------------------GIMKCDVIA 364 (394)
Q Consensus 320 NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~--g---------------------------------gi~~~d~vA 364 (394)
--.++..+.+.+.+.+.++-+..||+|.+|+|-.| . ++.+|+ +
T Consensus 66 ~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g~~~~~PcT--p 143 (288)
T 1b0a_A 66 RSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCT--P 143 (288)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHHHHHHHTTCCSSCCHH--H
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccchhHHhCCCCCCCCCc--H
Confidence 34577889999999999999999999999999543 2 345664 5
Q ss_pred HHHHHHHHHcCCc
Q 016159 365 SGIVNAAKQVSAL 377 (394)
Q Consensus 365 ~gii~a~~~~~~~ 377 (394)
+|+++.++.++++
T Consensus 144 ~gi~~ll~~~~i~ 156 (288)
T 1b0a_A 144 RGIVTLLERYNID 156 (288)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 8899999988754
No 184
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=24.47 E-value=52 Score=25.95 Aligned_cols=13 Identities=8% Similarity=-0.008 Sum_probs=9.5
Q ss_pred cEEEC-CHHHHHHH
Q 016159 95 GVHIV-KKEEVEDL 107 (394)
Q Consensus 95 GV~l~-s~ee~~~a 107 (394)
.+.++ ++++..+.
T Consensus 99 ~~~vGf~~~~~~~~ 112 (114)
T 1rw1_A 99 RTLVGFKPDAYAAA 112 (114)
T ss_dssp CEEESCCHHHHHHH
T ss_pred EEEEeCCHHHHHHH
Confidence 47778 98887654
No 185
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=23.94 E-value=3.3e+02 Score=25.08 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=38.1
Q ss_pred ceeEEecChhHHHHHHHHHHHcCCCccceeecCCC--------------CCHHHHHHHHHHHh--cCCCccEEEEEccC
Q 016159 293 EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN--------------ASEGQVVEAFKILT--SDEKVKAILVNIFG 355 (394)
Q Consensus 293 ~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~--------------a~~~~~~~a~~~~l--~~~~v~~i~vni~g 355 (394)
+||+++.|+-.+-..+..+...+.+..-.+|..-. .+.+.+.+.++.++ .++++++|+|-.+-
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~ 83 (318)
T 3oa2_A 5 NFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN 83 (318)
T ss_dssp EEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence 68888876545667788888776554433333221 12333433344444 48999999985554
No 186
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=23.31 E-value=1e+02 Score=30.64 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHH
Q 016159 329 SEGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQ 373 (394)
Q Consensus 329 ~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~ 373 (394)
+.+.+.+.++.+.+ .+++.|++ .+|-+-...........+.+++
T Consensus 56 ~~~~l~~ll~~~~~-~~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r 101 (431)
T 3t1i_A 56 TFVTLDEILRLAQE-NEVDFILLGGDLFHENKPSRKTLHTCLELLRK 101 (431)
T ss_dssp HHHHHHHHHHHHHH-TTCSEEEECSCCBSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cCCCEEEEcCccccCCCCCHHHHHHHHHHHHH
Confidence 34455556666654 56788886 4444444433444445555554
No 187
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=22.91 E-value=1.1e+02 Score=22.33 Aligned_cols=34 Identities=3% Similarity=-0.129 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCCCCCceee-----CCHHHHHHHHHHhC
Q 016159 33 YQGAELMAKYGINVPKGLAV-----ASVDEVKKAIQDAF 66 (394)
Q Consensus 33 ~~aK~lL~~~GIpvp~~~~~-----~s~eea~~~a~~lg 66 (394)
..+|++|.++||+...--+- .+++...+..+..|
T Consensus 18 ~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g 56 (87)
T 1aba_A 18 DNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLG 56 (87)
T ss_dssp HHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhC
Confidence 36899999999985433333 34444444555555
No 188
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=22.76 E-value=1.5e+02 Score=26.48 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=49.9
Q ss_pred CceeEEecChhHH-----HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHH
Q 016159 292 GEIGCMVNGAGLA-----MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (394)
Q Consensus 292 G~Ig~~~nGaGl~-----m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~g 366 (394)
.+||++.+..... -...+++..+|.+.-. ..+. +.+..+++++-++. ++++||. ..|.+|-|
T Consensus 134 ~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~-~~~~---~~~~~~~~~~~l~~--~~dai~~-------~~D~~a~g 200 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVET-FAVP---STNEIASTVTVMTS--KVDAIWV-------PIDNTIAS 200 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEE-EEES---SGGGHHHHHHHHTT--TCSEEEE-------CSCHHHHH
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEE-EecC---CHHHHHHHHHHHHh--cCCEEEE-------CCchhHHH
Confidence 3899987654321 2345666667765422 2221 23456677776664 6789995 24788888
Q ss_pred HHHHHHHcCCc--c-eEEeecce
Q 016159 367 IVNAAKQVSAL--D-CFGFHSNY 386 (394)
Q Consensus 367 ii~a~~~~~~~--~-~~~~~~~~ 386 (394)
.++++++.+.. + +++|...+
T Consensus 201 ~~~~l~~~~~~~~i~vig~d~~~ 223 (295)
T 3lft_A 201 GFPTVVSSNQSSKKPIYPSATAM 223 (295)
T ss_dssp THHHHHHHTTTTCCCEEESSHHH
T ss_pred HHHHHHHHHHHcCCCEEeCCHHH
Confidence 88888886543 2 77775543
No 189
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=21.87 E-value=1.4e+02 Score=22.11 Aligned_cols=41 Identities=5% Similarity=-0.202 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhC--CCCCcEE
Q 016159 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQDAF--PDHKELV 73 (394)
Q Consensus 33 ~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg--~~~~PvV 73 (394)
..+|++|.++||+.-.--+..+++...+..+..| ....|.|
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~i 64 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQI 64 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEE
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEE
Confidence 4789999999998544444455543344444444 1135654
No 190
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=21.78 E-value=4.5e+02 Score=24.06 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=37.3
Q ss_pred ceeEEecChhHHHHHHHHHHHcCCCccceeecCCC--------------CCHHHHHHHHHHHh-cCCCccEEEEEccC
Q 016159 293 EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN--------------ASEGQVVEAFKILT-SDEKVKAILVNIFG 355 (394)
Q Consensus 293 ~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~--------------a~~~~~~~a~~~~l-~~~~v~~i~vni~g 355 (394)
+||+++.|+-.+-..+..+...+.+..-.+|..-. .+.+.+.+.++-+. .++++++|+|-.+-
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~ 82 (312)
T 3o9z_A 5 RFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPN 82 (312)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCG
T ss_pred EEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCc
Confidence 68999886545567788888876554434443221 12233333333333 78999999985554
No 191
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=21.42 E-value=88 Score=33.04 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHcCCCCCCc-eeeCCHHHHHHHHHHhC--CCC--Cc---EEEEEee
Q 016159 30 IHEYQGAELMAKYGINVPKG-LAVASVDEVKKAIQDAF--PDH--KE---LVVKSQI 78 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~~-~~~~s~eea~~~a~~lg--~~~--~P---vVvK~q~ 78 (394)
-+.++..+.|++.|+|+++. .++.+.+|+.+..+.+. +.. |+ +|+|.+.
T Consensus 235 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~ 291 (667)
T 1dgs_A 235 KSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDD 291 (667)
T ss_dssp CBHHHHHHHHHHTTCCCCSCEEEEEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESB
T ss_pred CCHHHHHHHHHHCCCCCCccceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecC
Confidence 46778999999999999875 58899999988877653 222 22 8999743
No 192
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=21.28 E-value=65 Score=25.62 Aligned_cols=15 Identities=0% Similarity=-0.082 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHcCC
Q 016159 30 IHEYQGAELMAKYGI 44 (394)
Q Consensus 30 L~E~~aK~lL~~~GI 44 (394)
++..+-+++++++|+
T Consensus 42 ~~~~~l~~~~~~~g~ 56 (120)
T 2kok_A 42 LDAETLDRFLKTVPW 56 (120)
T ss_dssp CCHHHHHHHHHHSCG
T ss_pred CCHHHHHHHHHHcCh
Confidence 455666677777774
No 193
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=20.50 E-value=86 Score=33.11 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHhC--CCC--Cc---EEEEEee
Q 016159 30 IHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDAF--PDH--KE---LVVKSQI 78 (394)
Q Consensus 30 L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~lg--~~~--~P---vVvK~q~ 78 (394)
-+.++..+.|++.|+|+++ ..++.+.+|+.+..+.+. +.. |+ +|+|.+.
T Consensus 237 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~ 293 (671)
T 2owo_A 237 DTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNS 293 (671)
T ss_dssp SBHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESB
T ss_pred CCHHHHHHHHHHCCCCCCCcceeeCCHHHHHHHHHHHHHHHhcCCCCCccEEEEecC
Confidence 3677889999999999986 558899999988877652 111 33 7888743
No 194
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=20.46 E-value=2.5e+02 Score=26.02 Aligned_cols=65 Identities=8% Similarity=-0.087 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCC---Cccc--eeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc
Q 016159 305 MATMDIIKLHGG---TPAN--FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD 378 (394)
Q Consensus 305 m~t~D~i~~~gg---~~aN--flD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~ 378 (394)
.+++|.++..|| ++-. ..|.++ ++++..++++-+.++++|++|+. . +...+..+.+.+++.++-.
T Consensus 32 ~~a~~~iN~~ggi~G~~i~l~~~D~~~--~~~~~~~~~~~li~~~~V~~iig-----~--~s~~~~~~~~~~~~~~iP~ 101 (392)
T 3lkb_A 32 EDYCKWANERKLVPGVVFNCVVRDDQY--NNANTQRFFEEAVDRFKIPVFLS-----Y--ATGANLQLKPLIQELRIPT 101 (392)
T ss_dssp HHHHHHHHHHTSSTTEEEEEEEEECTT--CHHHHHHHHHHHHHTTCCSCEEE-----C--CHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHhcCCcCCeEeEEEEecCCC--CHHHHHHHHHHHHhhcCcEEEEe-----C--CcHHHHHHHHHHHhCCceE
Confidence 456788887776 3333 445554 55666777777777788999882 2 2345566777788776654
No 195
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=20.41 E-value=68 Score=26.31 Aligned_cols=54 Identities=11% Similarity=0.026 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc----eEEeecceEEEEEe
Q 016159 331 GQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD----CFGFHSNYFCLFRL 392 (394)
Q Consensus 331 ~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~----~~~~~~~~~~~~~~ 392 (394)
+.+.++++-+.+ .+++++++ ..++. ++.++++.++.++.. |.++-..+.|-|-+
T Consensus 80 ~~v~~v~~~~~~-~g~~~i~~-~~~~~------~~~l~~~a~~~Gi~~igpnc~g~~~~~~~~~~~ 137 (138)
T 1y81_A 80 KVGLQVAKEAVE-AGFKKLWF-QPGAE------SEEIRRFLEKAGVEYSFGRCIMVETSNKKIFLE 137 (138)
T ss_dssp HHHHHHHHHHHH-TTCCEEEE-CTTSC------CHHHHHHHHHHTCEEECSCCHHHHC--------
T ss_pred HHHHHHHHHHHH-cCCCEEEE-cCccH------HHHHHHHHHHCCCEEEcCCcceEEccCcCccee
Confidence 334444433333 45666554 33432 467778888888776 88888888887754
No 196
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=20.24 E-value=1.5e+02 Score=22.13 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHhC---CCCcccHHHHHHHHHHHHHHhhcCCcceeeeccee
Q 016159 190 ITDEDAAKVVDGL---APKVADRNDAIEQVKKLYKLFCESDCTLLEINPLA 237 (394)
Q Consensus 190 l~~~~a~~l~~~l---g~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLv 237 (394)
++..++++.+..+ |..+..+......|..+++...+.+ +++.||..
T Consensus 53 It~~~i~~~~~~l~~~~~s~~t~~~~~~~l~~~~~~A~~~~--~i~~nP~~ 101 (117)
T 2kkp_A 53 LQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMSQARESG--LLLQNPTE 101 (117)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTT--SCSSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCC--CcccCccc
Confidence 5777777776654 4555556666666666666655544 45789873
No 197
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=20.07 E-value=83 Score=30.83 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=19.5
Q ss_pred CcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHH
Q 016159 70 KELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (394)
Q Consensus 70 ~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~ 109 (394)
.+|++||.. +.||+ |+.+. +.+++.+..+
T Consensus 148 ~~wI~KP~~--~srG~---------GI~l~~~~~~i~~~~~ 177 (380)
T 3tig_A 148 NVWIAKSSS--GAKGE---------GILISSDATELLDFID 177 (380)
T ss_dssp CCEEEEESC--C-------------CCBCCSCSHHHHHHHH
T ss_pred CeEEEeCCc--cCCCC---------CEEEeCCHHHHHHHHh
Confidence 689999965 44665 68888 8888876654
Done!