Query 016160
Match_columns 394
No_of_seqs 267 out of 1753
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1485 Mitochondrial Fe2+ tra 100.0 1.1E-68 2.5E-73 518.0 32.9 383 11-393 13-411 (412)
2 COG0053 MMT1 Predicted Co/Zn/C 100.0 3.1E-50 6.6E-55 388.6 38.0 283 98-387 7-295 (304)
3 PRK09509 fieF ferrous iron eff 100.0 1.8E-49 3.8E-54 384.4 39.3 275 101-383 8-288 (299)
4 PRK03557 zinc transporter ZitB 100.0 6.3E-48 1.4E-52 375.2 35.4 277 102-387 17-297 (312)
5 TIGR01297 CDF cation diffusion 100.0 1.2E-45 2.5E-50 352.3 31.7 261 116-382 2-268 (268)
6 COG1230 CzcD Co/Zn/Cd efflux s 100.0 5.1E-41 1.1E-45 317.9 32.9 274 100-383 18-295 (296)
7 PF01545 Cation_efflux: Cation 100.0 3.1E-42 6.7E-47 331.2 16.4 273 106-384 1-283 (284)
8 KOG1484 Putative Zn2+ transpor 100.0 9.3E-28 2E-32 226.2 26.1 271 102-383 33-348 (354)
9 KOG1482 Zn2+ transporter [Inor 100.0 1.4E-27 3.1E-32 228.2 21.1 276 102-387 71-371 (379)
10 COG3965 Predicted Co/Zn/Cd cat 99.9 6.2E-26 1.4E-30 206.1 23.8 274 99-379 15-306 (314)
11 KOG1483 Zn2+ transporter ZNT1 99.9 3.6E-26 7.9E-31 219.2 13.7 268 106-383 11-371 (404)
12 KOG2802 Membrane protein HUEL 99.8 1E-20 2.2E-25 179.6 14.1 209 100-351 203-436 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.4 5.3E-06 1.1E-10 80.7 12.6 98 101-206 118-215 (304)
14 TIGR01297 CDF cation diffusion 98.2 1.2E-05 2.6E-10 76.6 11.9 92 104-203 98-189 (268)
15 PRK09509 fieF ferrous iron eff 98.2 1.9E-05 4.2E-10 76.7 12.7 92 104-203 119-210 (299)
16 PRK03557 zinc transporter ZitB 97.5 0.0011 2.3E-08 64.9 11.1 89 107-203 129-217 (312)
17 KOG1485 Mitochondrial Fe2+ tra 96.8 0.004 8.6E-08 62.0 7.7 95 104-206 231-325 (412)
18 PF01545 Cation_efflux: Cation 95.8 0.009 2E-07 57.2 3.7 92 106-204 109-203 (284)
19 COG1230 CzcD Co/Zn/Cd efflux s 92.6 0.63 1.4E-05 45.0 8.5 91 104-203 129-219 (296)
20 PF07444 Ycf66_N: Ycf66 protei 90.1 4.1 8.9E-05 31.8 9.2 45 248-292 34-81 (84)
21 PF03780 Asp23: Asp23 family; 87.9 5.2 0.00011 32.2 9.1 53 328-380 49-105 (108)
22 COG1183 PssA Phosphatidylserin 87.1 10 0.00022 35.6 11.5 86 213-300 36-121 (234)
23 PF14535 AMP-binding_C_2: AMP- 82.9 15 0.00033 29.0 9.3 79 310-390 7-88 (96)
24 COG4858 Uncharacterized membra 81.2 29 0.00064 31.2 11.1 101 183-287 102-208 (226)
25 COG4956 Integral membrane prot 81.0 56 0.0012 31.8 13.7 54 249-302 78-140 (356)
26 TIGR02898 spore_YhcN_YlaJ spor 80.8 14 0.00029 32.5 8.9 71 307-383 54-125 (158)
27 TIGR00473 pssA CDP-diacylglyce 79.9 40 0.00086 29.3 12.1 83 213-298 21-103 (151)
28 PF09580 Spore_YhcN_YlaJ: Spor 76.7 15 0.00032 32.5 8.2 68 307-382 75-143 (177)
29 PF00873 ACR_tran: AcrB/AcrD/A 74.8 1.6E+02 0.0035 33.6 22.0 45 337-381 558-602 (1021)
30 KOG1484 Putative Zn2+ transpor 73.6 70 0.0015 31.6 12.2 86 216-301 38-131 (354)
31 PF01883 DUF59: Domain of unkn 66.8 11 0.00024 27.9 4.3 47 328-377 25-72 (72)
32 TIGR02945 SUF_assoc FeS assemb 63.7 71 0.0015 25.2 8.8 48 340-389 39-87 (99)
33 PF10934 DUF2634: Protein of u 61.8 40 0.00086 27.7 7.0 50 296-346 53-107 (112)
34 cd04870 ACT_PSP_1 CT domains f 61.6 25 0.00055 26.2 5.5 57 306-368 10-66 (75)
35 PF13710 ACT_5: ACT domain; PD 57.6 29 0.00062 25.3 4.9 61 306-375 3-63 (63)
36 TIGR03221 muco_delta muconolac 57.0 72 0.0016 25.2 7.3 23 338-360 2-24 (90)
37 PRK14637 hypothetical protein; 55.5 50 0.0011 28.7 6.9 77 308-387 10-86 (151)
38 COG0779 Uncharacterized protei 53.9 75 0.0016 27.7 7.7 64 324-387 23-87 (153)
39 PRK14635 hypothetical protein; 53.8 95 0.0021 27.3 8.5 64 324-387 20-87 (162)
40 PRK14646 hypothetical protein; 51.5 90 0.0019 27.2 7.9 46 324-369 22-69 (155)
41 PRK10263 DNA translocase FtsK; 51.5 3.5E+02 0.0077 31.9 14.3 37 256-292 142-178 (1355)
42 COG2098 Uncharacterized protei 51.3 25 0.00054 28.7 3.9 34 351-384 35-68 (116)
43 COG2151 PaaD Predicted metal-s 51.3 1.4E+02 0.003 24.6 9.0 34 348-383 60-93 (111)
44 PF09685 Tic20: Tic20-like pro 51.1 1.2E+02 0.0026 23.9 8.5 68 98-166 37-104 (109)
45 TIGR03406 FeS_long_SufT probab 50.3 75 0.0016 28.3 7.3 76 308-385 74-159 (174)
46 PRK14647 hypothetical protein; 49.1 1.2E+02 0.0026 26.6 8.3 49 324-372 23-71 (159)
47 PRK00907 hypothetical protein; 48.9 87 0.0019 24.8 6.7 66 299-373 22-89 (92)
48 cd04888 ACT_PheB-BS C-terminal 47.1 1.1E+02 0.0024 22.2 7.6 63 306-377 11-74 (76)
49 cd04900 ACT_UUR-like_1 ACT dom 46.7 96 0.0021 22.8 6.5 59 306-367 12-70 (73)
50 PRK14634 hypothetical protein; 46.6 1.6E+02 0.0034 25.7 8.6 49 324-372 22-72 (155)
51 PRK11152 ilvM acetolactate syn 46.6 1.3E+02 0.0027 23.0 7.1 63 305-377 13-75 (76)
52 PF13291 ACT_4: ACT domain; PD 44.9 1.3E+02 0.0028 22.4 7.6 60 306-375 17-78 (80)
53 KOG1482 Zn2+ transporter [Inor 44.2 60 0.0013 32.4 6.2 68 130-203 224-291 (379)
54 PF02038 ATP1G1_PLM_MAT8: ATP1 41.5 60 0.0013 22.7 4.1 29 162-191 5-33 (50)
55 PF02790 COX2_TM: Cytochrome C 41.3 1.2E+02 0.0026 22.8 6.5 32 159-190 50-81 (84)
56 COG1302 Uncharacterized protei 41.0 2.3E+02 0.0049 24.1 9.2 87 288-380 22-112 (131)
57 PRK14641 hypothetical protein; 40.8 2.2E+02 0.0048 25.4 8.8 45 324-368 24-68 (173)
58 COG2921 Uncharacterized conser 40.3 1.6E+02 0.0034 23.3 6.7 65 300-373 21-87 (90)
59 PRK14639 hypothetical protein; 39.1 1.5E+02 0.0032 25.4 7.2 64 324-387 12-76 (140)
60 PF06570 DUF1129: Protein of u 38.6 3E+02 0.0065 24.9 12.6 6 152-157 130-135 (206)
61 PRK10764 potassium-tellurite e 38.5 3.7E+02 0.008 26.2 10.9 24 177-200 12-35 (324)
62 PLN02601 beta-carotene hydroxy 38.4 2.5E+02 0.0054 27.0 9.0 19 247-265 178-196 (303)
63 PRK14638 hypothetical protein; 38.1 1.9E+02 0.0041 25.0 7.8 46 324-369 23-69 (150)
64 PHA02975 hypothetical protein; 36.1 1.8E+02 0.004 21.7 6.3 62 172-234 2-66 (69)
65 PF11712 Vma12: Endoplasmic re 35.6 1.1E+02 0.0025 26.0 6.1 23 108-130 79-101 (142)
66 PRK14640 hypothetical protein; 35.4 3E+02 0.0064 23.9 9.3 49 324-372 21-69 (152)
67 PF01037 AsnC_trans_reg: AsnC 34.7 1.7E+02 0.0038 21.0 6.9 60 308-380 11-71 (74)
68 PRK00092 ribosome maturation p 34.1 3.1E+02 0.0067 23.7 9.1 59 308-369 9-67 (154)
69 cd04875 ACT_F4HF-DF N-terminal 33.7 1.9E+02 0.0041 21.1 7.4 49 305-354 9-58 (74)
70 PRK14632 hypothetical protein; 33.2 2.6E+02 0.0057 24.7 8.1 44 325-369 24-67 (172)
71 PF05105 Phage_holin_4: Holin 32.8 2.7E+02 0.0059 22.7 13.3 39 273-313 74-112 (118)
72 TIGR03341 YhgI_GntY IscR-regul 32.5 3.3E+02 0.0072 24.5 8.8 77 305-383 103-184 (190)
73 PF07062 Clc-like: Clc-like; 32.0 4.1E+02 0.0089 24.5 10.7 42 104-145 105-149 (211)
74 TIGR03319 YmdA_YtgF conserved 31.7 1.5E+02 0.0032 31.2 7.2 63 309-378 439-504 (514)
75 COG3696 Putative silver efflux 30.6 96 0.0021 34.8 5.6 100 270-372 13-124 (1027)
76 PRK06737 acetolactate synthase 29.8 2.5E+02 0.0055 21.3 6.9 62 305-375 12-73 (76)
77 COG4331 Predicted membrane pro 29.7 2.6E+02 0.0056 24.2 6.9 54 101-157 104-157 (167)
78 PF11654 DUF2665: Protein of u 29.2 61 0.0013 22.4 2.6 21 269-289 4-24 (47)
79 COG0841 AcrB Cation/multidrug 28.6 3.9E+02 0.0084 30.7 10.3 65 305-371 55-120 (1009)
80 TIGR00816 tdt C4-dicarboxylate 28.5 5.5E+02 0.012 24.8 10.4 20 270-289 101-120 (320)
81 PRK09577 multidrug efflux prot 28.1 1.2E+02 0.0026 34.8 6.3 42 338-379 567-608 (1032)
82 cd04871 ACT_PSP_2 ACT domains 27.2 1.7E+02 0.0037 22.4 5.2 67 299-369 4-76 (84)
83 PF13740 ACT_6: ACT domain; PD 27.1 2.5E+02 0.0055 20.7 6.1 57 305-368 12-68 (76)
84 PRK12704 phosphodiesterase; Pr 26.9 1.4E+02 0.0031 31.3 6.2 62 309-378 445-510 (520)
85 smart00267 GGDEF diguanylate c 26.9 3.4E+02 0.0073 21.8 8.4 64 299-371 51-114 (163)
86 PRK02507 proton extrusion prot 26.4 7.2E+02 0.016 25.5 15.7 117 101-244 294-416 (422)
87 TIGR00489 aEF-1_beta translati 26.3 2.9E+02 0.0063 21.7 6.3 64 309-378 19-83 (88)
88 PRK10614 multidrug efflux syst 26.3 4.3E+02 0.0093 30.4 10.3 64 305-370 56-120 (1025)
89 PRK10503 multidrug efflux syst 26.2 1.5E+02 0.0032 34.2 6.5 43 338-380 568-610 (1040)
90 PRK00106 hypothetical protein; 26.0 1.6E+02 0.0034 31.2 6.2 63 309-378 460-525 (535)
91 PF11381 DUF3185: Protein of u 25.7 2.6E+02 0.0057 20.2 5.9 47 174-225 5-54 (59)
92 PF02426 MIase: Muconolactone 25.6 1.3E+02 0.0029 23.7 4.3 27 337-363 2-28 (91)
93 PRK11895 ilvH acetolactate syn 25.4 3.2E+02 0.007 24.0 7.2 64 305-377 12-75 (161)
94 CHL00043 cemA envelope membran 25.3 6E+02 0.013 24.2 15.9 116 102-244 134-255 (261)
95 COG4035 Predicted membrane pro 25.2 48 0.001 26.2 1.7 45 135-186 59-104 (108)
96 PF01889 DUF63: Membrane prote 24.7 6.3E+02 0.014 24.2 10.8 47 213-259 144-195 (273)
97 PRK04435 hypothetical protein; 24.4 4.5E+02 0.0098 22.5 8.0 64 306-377 80-143 (147)
98 COG3696 Putative silver efflux 24.1 1.1E+02 0.0024 34.3 4.7 40 343-382 563-602 (1027)
99 TIGR00119 acolac_sm acetolacta 24.0 3.8E+02 0.0083 23.4 7.3 64 305-377 11-74 (157)
100 MTH00140 COX2 cytochrome c oxi 22.9 4.1E+02 0.0089 24.6 7.8 28 162-189 52-79 (228)
101 PRK14633 hypothetical protein; 22.9 5E+02 0.011 22.4 9.4 58 308-369 6-63 (150)
102 PF02576 DUF150: Uncharacteris 22.7 2.3E+02 0.0051 23.9 5.7 45 324-368 11-55 (141)
103 COG2056 Predicted permease [Ge 22.6 4.9E+02 0.011 26.3 8.4 60 104-174 240-300 (444)
104 PRK11179 DNA-binding transcrip 22.5 4E+02 0.0086 22.7 7.2 65 306-382 80-144 (153)
105 TIGR00915 2A0602 The (Largely 22.3 6.9E+02 0.015 28.8 11.0 66 305-371 54-120 (1044)
106 PRK08577 hypothetical protein; 22.0 4.7E+02 0.01 21.8 7.6 62 307-377 68-131 (136)
107 TIGR02610 PHA_gran_rgn putativ 21.8 1.8E+02 0.0039 23.0 4.4 32 341-372 3-34 (91)
108 COG0581 PstA ABC-type phosphat 21.5 7.5E+02 0.016 24.0 11.1 54 244-297 109-168 (292)
109 cd04874 ACT_Af1403 N-terminal 21.4 2.9E+02 0.0063 19.2 6.4 61 306-378 11-72 (72)
110 PF06157 DUF973: Protein of un 21.3 7.5E+02 0.016 23.9 16.7 22 326-347 209-230 (285)
111 COG3978 Acetolactate synthase 21.1 4E+02 0.0087 20.6 6.9 66 303-378 11-76 (86)
112 PRK15362 pathogenicity island 20.9 4.5E+02 0.0097 27.1 7.9 50 102-151 153-202 (473)
113 PF03203 MerC: MerC mercury re 20.8 4.7E+02 0.01 21.3 10.1 79 103-189 3-83 (116)
114 TIGR00915 2A0602 The (Largely 20.8 2.6E+02 0.0057 32.1 7.2 44 338-381 570-615 (1044)
115 PRK10503 multidrug efflux syst 20.5 4.1E+02 0.0089 30.6 8.7 64 305-370 65-129 (1040)
116 PF09877 DUF2104: Predicted me 20.4 1.4E+02 0.0031 23.9 3.5 20 167-186 78-97 (99)
117 PRK10614 multidrug efflux syst 20.3 1.3E+03 0.029 26.4 23.1 44 336-379 556-599 (1025)
118 PRK00341 hypothetical protein; 20.2 4.3E+02 0.0094 20.7 7.6 64 300-373 23-88 (91)
119 PRK09579 multidrug efflux prot 20.1 2.1E+02 0.0046 32.8 6.3 42 339-380 557-598 (1017)
No 1
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-68 Score=518.00 Aligned_cols=383 Identities=47% Similarity=0.721 Sum_probs=337.4
Q ss_pred ccccccccccccc----ccccccccccCCCcccccC----CCCCCcccccccCCCCchhHHHHHHHHHHHHhhhhhhHHH
Q 016160 11 EETSLLAQQGNVD----RSWRLNFDGFQVSPERTEK----KPPRGLHDCLGVLGPEDNVAEYYQQQVQMLEGFNEMDALA 82 (394)
Q Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~y~~q~~~i~~~~~~~~~~ 82 (394)
+..+|++...+.. .+|+..++.|..+++...+ .-+.....+++...+.+++.+||.+|.++.+.+.+..+..
T Consensus 13 ~~~sl~~~~~~~~~l~~~~~~~~~~~f~~~~e~~~~~~r~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~l~~~~~~~~~~ 92 (412)
T KOG1485|consen 13 SKSSLLSIDGNKPQLSIKSWSEKLDNFELISEQINSENRTCRRTKLHKSLRSPEKEDNVSEFYSSQKSLLQKFVEHSHTH 92 (412)
T ss_pred cccchhcccCCCCchhhhhHHHHHHHhccchhhhhcccccccccccccccccchhhhccchHHHHHHHHhcccccccccc
Confidence 5567777653333 5899999999976553321 1123334556666677777899999999999999999888
Q ss_pred hhCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCC
Q 016160 83 ERGFVPGMTK-EERENLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNP 161 (394)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~ 161 (394)
++|...+..+ ++.+..+..++++.|+++++|++++++|+++|+.+||+|++||++||+.|+++++++|++.+.++|+++
T Consensus 93 ~~~~~~~~~~~e~~~~~~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~ 172 (412)
T KOG1485|consen 93 EHGFVSEALELEKLQILKNAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPT 172 (412)
T ss_pred cCCCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 8887666443 333344557899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc-cccccch-----hHHHHHHHHHHHHHHHHHHHHHH
Q 016160 162 YQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQF-NLTKEQE-----QWVVGIMLSVTLVKLLLVVYCRA 235 (394)
Q Consensus 162 ~~~P~G~~R~E~l~~li~s~~m~~~~~~il~esi~~L~~~~~~~-~~~~~~~-----~~~i~i~~~~~vv~~~l~~~~~~ 235 (394)
++||+|++|+||+|.++++++|.++|++++++|++.+.++.... ..++... .|++++|+.+..+++.+++||+.
T Consensus 173 ~~YP~G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~ 252 (412)
T KOG1485|consen 173 YEYPRGRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCAI 252 (412)
T ss_pred hhCCCCCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998722211 1111222 38899999999999999999998
Q ss_pred hcC-hhHHHhHHHHHhHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 016160 236 FTN-EIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTY 314 (394)
Q Consensus 236 ~~s-~~l~a~a~~~~~D~~~n~~~i~~~~~~~~~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~ 314 (394)
.++ .+++|.|+|||+|+++|+++++++.++.+++||+||+||+++|.|++++|.++..+++..|+|+++|||+++++++
T Consensus 253 ~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~ 332 (412)
T KOG1485|consen 253 KTNSNIVRANAWDHRNDVLTNSVALVAASLAYYYNYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITY 332 (412)
T ss_pred hcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 775 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCcccccC
Q 016160 315 LCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRPEHAQAH 393 (394)
Q Consensus 315 ~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~~~~eh~~~~ 393 (394)
++++|.+.+++||++++|++|..++|++||++|++|+++++|++++.+|++||.+|+|+|+|||+||+++|+|+|+..+
T Consensus 333 ~~l~~~~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~e~~hr~~~~~~~ 411 (412)
T KOG1485|consen 333 LILQHGKLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIELLPEVERAFVHIDYEFLHRPHHEHLS 411 (412)
T ss_pred HHHhhcCccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhhcchheeeeeecCccccCCchHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998653
No 2
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-50 Score=388.55 Aligned_cols=283 Identities=24% Similarity=0.424 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHH
Q 016160 98 LARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGIL 177 (394)
Q Consensus 98 ~~~~~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~l 177 (394)
..+..+++.+++++.|++++++|+++|+.+||.||+||++||++|++++++.+++.++++||+|++|||||+|+|+++++
T Consensus 7 ~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl 86 (304)
T COG0053 7 RLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASL 86 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHH----hcChhHHHhHHHHHhHHH
Q 016160 178 VFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVI 253 (394)
Q Consensus 178 i~s~~m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~----~~s~~l~a~a~~~~~D~~ 253 (394)
+.+++++++|++++++++.+++.+.+. ....+++++++++.+++.+++.|.++ .+|+.+.|++.|+++|++
T Consensus 87 ~~~~~i~~~g~~i~~~a~~~~~~~~~~-----~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ 161 (304)
T COG0053 87 IVSILIFAAGFEILLEAIKRLISPQPV-----EPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVL 161 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHH
Confidence 999999999999999999999986652 33578899999999999999999854 679999999999999999
Q ss_pred HHHHHHHHHHHHhhhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEe
Q 016160 254 TNIIGLVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAY 332 (394)
Q Consensus 254 ~n~~~i~~~~~~~~~~-~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~ 332 (394)
+++ +++.++++.+++ ||+||++|++|+++|++++++++++++..|+|+.+|++..+++++++.+ .++|.++|++|++
T Consensus 162 ts~-~~lvgl~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~-~~~V~~v~~lr~R 239 (304)
T COG0053 162 TSL-AVLVGLLGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILS-VPGVKGVHDLRTR 239 (304)
T ss_pred HHH-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhc-CCcceeeecceee
Confidence 986 455555577776 6999999999999999999999999999999999999999999999987 8899999999999
Q ss_pred eecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEEecCCCCCC
Q 016160 333 TFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEYTHRP 387 (394)
Q Consensus 333 ~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~-~~~V~~v~Vhid~~~~~~~ 387 (394)
+.|+.+++++||++|++|++.++|+|++++++.|++ .|++.+++||+||......
T Consensus 240 ~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~ 295 (304)
T COG0053 240 KSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEE 295 (304)
T ss_pred eeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCccccc
Confidence 999999999999999999999999999999999985 5669999999999875443
No 3
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=1.8e-49 Score=384.45 Aligned_cols=275 Identities=19% Similarity=0.251 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHH
Q 016160 101 SETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFA 180 (394)
Q Consensus 101 ~~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s 180 (394)
..+++.++++++|++++++|+++|+.+||+||+||++||+.|++++++++++.+.++||++.+|||||+|+|++++++.|
T Consensus 8 ~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHH----hcChhHHHhHHHHHhHHHHHH
Q 016160 181 SVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNI 256 (394)
Q Consensus 181 ~~m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~----~~s~~l~a~a~~~~~D~~~n~ 256 (394)
++++++++++++||++++++|++. ....+++++++++++++.++++|+++ .+|+.+++++.|+++|+++|+
T Consensus 88 ~~l~~~~~~~~~esi~~l~~~~~~-----~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~ 162 (299)
T PRK09509 88 MFISGSALFLFLTGIQHLISPTPM-----NDPGVGIIVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNG 162 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC-----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987662 12345677788888899988877754 578999999999999999986
Q ss_pred HHHHHHHHHhhhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeeec
Q 016160 257 IGLVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFG 335 (394)
Q Consensus 257 ~~i~~~~~~~~~~-~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G 335 (394)
+++.++++.+++ +|+||++++++++++++.++++++++...|+|+++|++..++|++.+.+ .|+|.++|++|+|+.|
T Consensus 163 -~vl~~~~~~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~-~~~v~~v~~l~~~~~G 240 (299)
T PRK09509 163 -AILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRTRQSG 240 (299)
T ss_pred -HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh-CCCCcCceeeeeEeeC
Confidence 555566656554 5999999999999999999999999999999999999999999999986 7999999999999999
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccEEEEEEecCC
Q 016160 336 SHYFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAFVHLDYEY 383 (394)
Q Consensus 336 ~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~-~~~~V~~v~Vhid~~~ 383 (394)
+++++++||++|++++++|+|++++++|++|+ ++|++ +++||+||..
T Consensus 241 ~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~-~v~ihveP~~ 288 (299)
T PRK09509 241 PTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGS-DVIIHQDPCS 288 (299)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCC-EEEEEeCCCC
Confidence 99999999999999999999999999999997 56765 6999999965
No 4
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=6.3e-48 Score=375.24 Aligned_cols=277 Identities=17% Similarity=0.225 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHH
Q 016160 102 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFAS 181 (394)
Q Consensus 102 ~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~ 181 (394)
.++.+++++++|++++++|+++|+.+||+||+||++||+.|++++++++++.+.++||+|.+|||||+|+|++++++.++
T Consensus 17 ~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~ 96 (312)
T PRK03557 17 NARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAI 96 (312)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHH
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHH---hcChhHHHhHHHHHhHHHHHHHH
Q 016160 182 VMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA---FTNEIVKAYAQDHFFDVITNIIG 258 (394)
Q Consensus 182 ~m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~---~~s~~l~a~a~~~~~D~~~n~~~ 258 (394)
+|+++++++++||+++++++.+ + ...+++++++.++++|.+++++.++ .+|..+++.+.|+++|+++++++
T Consensus 97 ~l~~~~~~i~~eai~~l~~~~~-~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~v 170 (312)
T PRK03557 97 ALVVITILIVWEAIERFRTPRP-V-----AGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGA 170 (312)
T ss_pred HHHHHHHHHHHHHHHHHcCCcc-c-----cchHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654 1 1245667777888889888877654 35788999999999999999877
Q ss_pred HHHHHHHhhhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeeecCe
Q 016160 259 LVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH 337 (394)
Q Consensus 259 i~~~~~~~~~~-~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~ 337 (394)
++++.++.+++ +|+||++++++++++++.+++++++++..|+|.++|++..+++++.+.+..|+|.++|++|+|+.|++
T Consensus 171 lv~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G~~ 250 (312)
T PRK03557 171 IIAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVGEK 250 (312)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeCCe
Confidence 77776666554 58999999999999999999999999999999887776788898877545899999999999999999
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCC
Q 016160 338 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 387 (394)
Q Consensus 338 ~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~~~~ 387 (394)
+++++||++++++ ++|++++++|++|++.+++++++||+||+..+.+
T Consensus 251 ~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~~ 297 (312)
T PRK03557 251 PVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGP 297 (312)
T ss_pred EEEEEEEEECCCC---CHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCCc
Confidence 9999999999875 5799999999999876689999999999975554
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=1.2e-45 Score=352.31 Aligned_cols=261 Identities=21% Similarity=0.365 Sum_probs=238.2
Q ss_pred HHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016160 116 LFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESL 195 (394)
Q Consensus 116 l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~m~~~~~~il~esi 195 (394)
++++|+++|+.+||.||+||++||+.|++++++++++.+.++||++++||||++|+|++++++.|++|++++++++++|+
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHH----hcChhHHHhHHHHHhHHHHHHHHHHHHHHHhhhhhc
Q 016160 196 RTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDW 271 (394)
Q Consensus 196 ~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~----~~s~~l~a~a~~~~~D~~~n~~~i~~~~~~~~~~~~ 271 (394)
++++++++. ....+++.++.++++++.++++++++ .+|+.+++++.|+++|+++++.++++..+..+.++|
T Consensus 82 ~~l~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~~~~ 156 (268)
T TIGR01297 82 ERLINPEPE-----IDGGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWHW 156 (268)
T ss_pred HHHhCCCCc-----ccchhHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987642 22356777888889999999999876 468999999999999999987555555554444579
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeeecC-eEEEEEEEEeCCCC
Q 016160 272 MDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS-HYFVEVDIVLPASM 350 (394)
Q Consensus 272 ~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~-~~~vev~I~v~~~~ 350 (394)
+||++++++++++++.++++++++...|+|.+++++..+++++.+.+ .++|.++|++|+|+.|+ ++++++||++|+++
T Consensus 157 ~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~ 235 (268)
T TIGR01297 157 ADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILS-IPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDL 235 (268)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhc-CCCcccceEeEEEEcCCCCEEEEEEEEECCCC
Confidence 99999999999999999999999999999999888999999999975 89999999999999999 79999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-cCCCccEEEEEEecC
Q 016160 351 PLQEAHDIGESLQEKLE-LLPEIERAFVHLDYE 382 (394)
Q Consensus 351 ~l~~ah~I~~~lq~~l~-~~~~V~~v~Vhid~~ 382 (394)
+++|+|++.+++|++++ +.|++++++||+||+
T Consensus 236 ~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 236 DLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 99999999999999996 579999999999984
No 6
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-41 Score=317.95 Aligned_cols=274 Identities=15% Similarity=0.218 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHH
Q 016160 100 RSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVF 179 (394)
Q Consensus 100 ~~~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~ 179 (394)
.+.+|.+++++++|++++++|+++|+.|||+||+||++|++.|+++.++.+++.+.++|+++.+|||||.|+|.++++++
T Consensus 18 ~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~n 97 (296)
T COG1230 18 PRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLN 97 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHHh--cChhHHHhHHHHHhHHHHHHH
Q 016160 180 ASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAF--TNEIVKAYAQDHFFDVITNII 257 (394)
Q Consensus 180 s~~m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~~--~s~~l~a~a~~~~~D~~~n~~ 257 (394)
+++++.+++++++|+++||++|.+ .+...|++++++++++|+++.+..++- +|.++++...|.++|.+.|+.
T Consensus 98 av~Li~~s~~I~~EAi~R~~~P~~------i~~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~ 171 (296)
T COG1230 98 ALLLIVVSLLILWEAIQRLLAPPP------IHYSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGSVG 171 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC------CCccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887 223678999999999999999888775 468999999999999999999
Q ss_pred HHHHHHHHhhhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeeecC
Q 016160 258 GLVAVLLANYIDD-WMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS 336 (394)
Q Consensus 258 ~i~~~~~~~~~~~-~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~ 336 (394)
+++++++..+++| |+||+.+++|+++++..++++++++.+.|++..|+....+++++.+.+ .|+|.++|++++|..++
T Consensus 172 vIia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~-~~~v~~vhdlHvWsi~~ 250 (296)
T COG1230 172 VIIAAIVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLR-IPGVASVHDLHVWSITG 250 (296)
T ss_pred HHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhc-CCCccceeecccCCCCC
Confidence 9999999988876 999999999999999999999999999999977666668888888874 89999999999999977
Q ss_pred e-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCC
Q 016160 337 H-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 383 (394)
Q Consensus 337 ~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~ 383 (394)
+ ....+|+++++..+- +++.+++++++.+.+++++++|++|+..
T Consensus 251 ~~~~~t~Hv~v~~~~~~---~~~~~~~~~~l~~~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 251 GEHALTLHVVVDEVADA---DAALDQIVRRLLEKYGIEHVTIQLETEG 295 (296)
T ss_pred CceeEEEEEEecCccch---HHHHHHHHHHHhhhcCcceEEEEecCCC
Confidence 6 899999999944332 2388999999987789999999998864
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=3.1e-42 Score=331.19 Aligned_cols=273 Identities=28% Similarity=0.471 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 016160 106 IRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMAT 185 (394)
Q Consensus 106 l~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~m~~ 185 (394)
+++++++|++++++|+.+|+.+||.++++|++||+.|+++.++.+++.+.++||++.+||||++|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHH----hc--ChhHHHhHHHHHhHHHHHHHHH
Q 016160 186 LGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FT--NEIVKAYAQDHFFDVITNIIGL 259 (394)
Q Consensus 186 ~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~----~~--s~~l~a~a~~~~~D~~~n~~~i 259 (394)
+++.++++++++++++.+ ++ ...+++.+++++++++.+++++.++ .+ |+.+++.+.++++|.+.++.++
T Consensus 81 ~~~~~~~~si~~~~~~~~-~~----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~ 155 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHE-PS----PPGIVLIVALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVL 155 (284)
T ss_dssp HHHHHHHHHTTTSSSSSS-SS----TTTS-THHHHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-
T ss_pred hHHHHHHHHhhccccccc-ch----hhhhhhhhhhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHH
Confidence 999999999999999855 22 2244555577888899999888876 45 8999999999999999987555
Q ss_pred HHHHHHhhhh--hcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeeecC-
Q 016160 260 VAVLLANYID--DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS- 336 (394)
Q Consensus 260 ~~~~~~~~~~--~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~- 336 (394)
++.++..... ||+||++++++++++++.++++++++...|+|++++++..+++++.+.+ .++|.+++++|+|+.|+
T Consensus 156 i~~~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~g~~ 234 (284)
T PF01545_consen 156 ISLLLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIES-VPGVIEVHDLRVWQVGRN 234 (284)
T ss_dssp SSSTSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHH-TSS-SEEEEEEEEEETT-
T ss_pred HHHHHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhcc-CCceEeccceEEEEecCC
Confidence 5555555542 3599999999999999999999999999999999888999999999976 89999999999999999
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccEEEEEEecCCC
Q 016160 337 HYFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAFVHLDYEYT 384 (394)
Q Consensus 337 ~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~-~~~~V~~v~Vhid~~~~ 384 (394)
.+++++|+.+|++++++|+|++.+++++.++ ++|++.+++||++|+..
T Consensus 235 ~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 235 KYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 7999999999999999999999999999997 58999999999999854
No 8
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.3e-28 Score=226.22 Aligned_cols=271 Identities=14% Similarity=0.187 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHH
Q 016160 102 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFAS 181 (394)
Q Consensus 102 ~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~ 181 (394)
.+|-+...+.+|+.++..+++.+..|+|+++++|++|+++|+.+..+.+++..++++|++.+||||+.|+|.+++++.++
T Consensus 33 ~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~v 112 (354)
T KOG1484|consen 33 DSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGV 112 (354)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHH
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHH-h------------------------
Q 016160 182 VMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA-F------------------------ 236 (394)
Q Consensus 182 ~m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~-~------------------------ 236 (394)
+..+.+++++.|+++||++|++ +. ......+...+.++|++-.+..+. .
T Consensus 113 flvl~a~fi~~Es~eRl~~ppe---i~---t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~ 186 (354)
T KOG1484|consen 113 FLVLIAFFIFSESVERLFDPPE---IH---TNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLL 186 (354)
T ss_pred HHHHHHHHHhHHHHHHhcCchh---cC---CceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhccccccc
Confidence 9999999999999999998844 32 122334455555566554333321 0
Q ss_pred ----------------cChhHHHhHHHHHhHHHHHHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016160 237 ----------------TNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDD-WMDPVGAIILALYTIRTWSMTVLENVNSL 299 (394)
Q Consensus 237 ----------------~s~~l~a~a~~~~~D~~~n~~~i~~~~~~~~~~~-~~Dpi~aiiIa~~ii~~~~~~~~e~~~~L 299 (394)
.+..+.....|.+.|.+.+++.+++.++..+++| ++||+++++||+.|+.+.+++++++...|
T Consensus 187 ~~~~~~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iL 266 (354)
T KOG1484|consen 187 GVWDLHHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKIL 266 (354)
T ss_pred cccccccccccccCCcccccccchhHHHHHHHhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112445567889999998877778888887877 99999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHh--cCCCcccceeEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEE
Q 016160 300 VGRSAAPEYLQKLTYLCWN--HHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAF 376 (394)
Q Consensus 300 lg~s~~~e~~~~I~~~~~~--~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~ 376 (394)
+.+ .||+..+.+.+.+.+ ..++|.++.+-|.|+.+++ +...+|+.+..+.. .+.+.+...++++.. +|...+
T Consensus 267 Lq~-tPp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dad---e~~vl~~V~~~~~~~-gV~~lt 341 (354)
T KOG1484|consen 267 LQR-TPPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDAD---EQSVLAHVTRKLEDA-GVKDLT 341 (354)
T ss_pred Hhc-CChhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCcc---hhHHHHHHHHHHHhc-ceeEEE
Confidence 986 566666665554432 1578889999999999998 99999999988854 467888888888876 699999
Q ss_pred EEEecCC
Q 016160 377 VHLDYEY 383 (394)
Q Consensus 377 Vhid~~~ 383 (394)
|++|.+.
T Consensus 342 vQv~~~~ 348 (354)
T KOG1484|consen 342 VQVEKEN 348 (354)
T ss_pred EEEeccc
Confidence 9988875
No 9
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.4e-27 Score=228.15 Aligned_cols=276 Identities=14% Similarity=0.192 Sum_probs=239.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHH
Q 016160 102 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFAS 181 (394)
Q Consensus 102 ~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~ 181 (394)
.+|.++.+.++.+.+++.+++.|+.+||+|+++||.|-+.|+.+-.+++++.+.+++|++.+..||++|.|.+++++.-.
T Consensus 71 ~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~ 150 (379)
T KOG1482|consen 71 AERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVL 150 (379)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHHh------c---------------Chh
Q 016160 182 VMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAF------T---------------NEI 240 (394)
Q Consensus 182 ~m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~~------~---------------s~~ 240 (394)
.++.+...++++++.++++++.+. +...|+++...++++|.++....... + |.+
T Consensus 151 ~IW~~tgvLV~~Ai~Rl~s~~~ev-----~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~n 225 (379)
T KOG1482|consen 151 LIWVVTGVLVYEAIQRLLSGDYEV-----NGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNLN 225 (379)
T ss_pred HHHHhhhhhHHHHHhhhhcCceee-----cceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccchH
Confidence 999999999999999999998642 23556777777788887776554211 1 268
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHhhhh--h-cccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 016160 241 VKAYAQDHFFDVITNIIGLVAVLLANYID--D-WMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCW 317 (394)
Q Consensus 241 l~a~a~~~~~D~~~n~~~i~~~~~~~~~~--~-~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~ 317 (394)
+++...|.+.|.+.+. |++.+....+++ | .+||+..++.++.++.+..+++|+.+..|++.+|-.-....+++.+.
T Consensus 226 vraAyiHVlGDliQSv-GV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~ 304 (379)
T KOG1482|consen 226 VRAAFVHVLGDLIQSV-GVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLL 304 (379)
T ss_pred HHHHHHHHHHHHHHHH-HHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHh
Confidence 9999999999999986 554444445553 3 89999999999999999999999999999997655445788888887
Q ss_pred hcCCCcccceeEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCC
Q 016160 318 NHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 387 (394)
Q Consensus 318 ~~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~~~~ 387 (394)
. .++|+.||++++|..+-+ ..+.+||.++++ .+++.|.++..+.|++-.++.+++|++||..+..+
T Consensus 305 ~-iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~~ 371 (379)
T KOG1482|consen 305 S-IEGVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYGISHVTIQIEPYTEEMD 371 (379)
T ss_pred h-hcceeEEEEEEEEEEecCceEEEEEEeecCC---CCHHHHHHHHHHHHHhhcceEEEEEEecCCccchh
Confidence 6 899999999999999886 899999999976 45788999999999988899999999999876543
No 10
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.2e-26 Score=206.11 Aligned_cols=274 Identities=17% Similarity=0.209 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhc-CCCCCCCCcchhHHHHHHHH
Q 016160 99 ARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQ-TPNPYQYPIGKKRMQPLGIL 177 (394)
Q Consensus 99 ~~~~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~-~~~~~~~P~G~~R~E~l~~l 177 (394)
...+++.+.+|++..++++.+.+++|+.+||++++-|++.|+.|+.-+.+.+...|+.. +|.+.|||||+..+||+...
T Consensus 15 ~~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ 94 (314)
T COG3965 15 SSNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLA 94 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhh
Confidence 34677889999999999999999999999999999999999999999999999988876 77778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHH----hcChhHHHhHHHHHhHHH
Q 016160 178 VFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVI 253 (394)
Q Consensus 178 i~s~~m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~----~~s~~l~a~a~~~~~D~~ 253 (394)
+.+.+++.+.++-++.++..+++|+.+.+ +.+++...+++..+++.+++..+| .+|+-+.++...++.|.+
T Consensus 95 ing~ll~ll~lyAlinAl~~l~dGGR~v~-----~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~ 169 (314)
T COG3965 95 INGTLLALLCLYALINALGSLLDGGREVE-----PGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTC 169 (314)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCcccc-----ccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHH
Confidence 99999999999999999999999999643 477888888888888988888866 458889999999999999
Q ss_pred HHHHHHHHHHHHhhh--------hhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCccc
Q 016160 254 TNIIGLVAVLLANYI--------DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRH 325 (394)
Q Consensus 254 ~n~~~i~~~~~~~~~--------~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~ 325 (394)
.+....++-+.++.+ ..|+||+.-.+++++++...+++++.+.++++-.+ |.|..+.+...+.+-.+. .+
T Consensus 170 lS~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmt-P~el~q~ies~~~~~v~k-~~ 247 (314)
T COG3965 170 LSAALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMT-PNELQQSIESHAHEIVEK-YG 247 (314)
T ss_pred HHHHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHH-hc
Confidence 986444333333322 24999999999999999999999999999999865 458877777665431111 11
Q ss_pred c--eeEEEeeecCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHHHhcCCCccEEEEEE
Q 016160 326 I--DTVRAYTFGSHYFVEVDIVLPASMP---LQEAHDIGESLQEKLELLPEIERAFVHL 379 (394)
Q Consensus 326 i--~~vr~~~~G~~~~vev~I~v~~~~~---l~~ah~I~~~lq~~l~~~~~V~~v~Vhi 379 (394)
+ +.+++-+.|+..++|+|..+|++++ +++.++|.+++++.|.++|.-...+|.+
T Consensus 248 f~~~~~yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsf 306 (314)
T COG3965 248 FPSYHVYVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSF 306 (314)
T ss_pred CchHHHHHHHhccceEEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEE
Confidence 1 2445678899999999999988865 7889999999999999887766666654
No 11
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.6e-26 Score=219.24 Aligned_cols=268 Identities=16% Similarity=0.225 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 016160 106 IRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMAT 185 (394)
Q Consensus 106 l~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~m~~ 185 (394)
++.-+++.+++|+++++.++.++|+||+||++|++.|+++.++.+++.+.+++.+..+||||+.|.|.+|+++.++++..
T Consensus 11 li~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~a 90 (404)
T KOG1483|consen 11 LISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTA 90 (404)
T ss_pred eeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHH
Confidence 55668889999999999999999999999999999999999999999999998788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHH---H---H-------------------------
Q 016160 186 LGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVY---C---R------------------------- 234 (394)
Q Consensus 186 ~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~---~---~------------------------- 234 (394)
+-+.++.|+++|++.+... ..+...+.+.+++++.|.+-+.. + .
T Consensus 91 lc~~I~~EA~~R~I~p~~i-----~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~ 165 (404)
T KOG1483|consen 91 LCVSILIEAIERIIEPHHI-----ENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHS 165 (404)
T ss_pred HHHHHHHHHHHhhcCCccc-----cCceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCch
Confidence 9999999999999988762 12233333444444444331111 1 0
Q ss_pred ---------H-------------------hc-----------------------------ChhHHHhHHHHHhHHHHHHH
Q 016160 235 ---------A-------------------FT-----------------------------NEIVKAYAQDHFFDVITNII 257 (394)
Q Consensus 235 ---------~-------------------~~-----------------------------s~~l~a~a~~~~~D~~~n~~ 257 (394)
. .+ +-+++..+.+.+.|++.+++
T Consensus 166 ~~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~ 245 (404)
T KOG1483|consen 166 HAIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSII 245 (404)
T ss_pred hccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccceE
Confidence 0 00 01122234455678888877
Q ss_pred HHHHHHHHhhhh--h--cccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEee
Q 016160 258 GLVAVLLANYID--D--WMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYT 333 (394)
Q Consensus 258 ~i~~~~~~~~~~--~--~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~ 333 (394)
+++++++.++.. | |+||+.+++++.+++.+++++++++...|+..+|..-.++++++.+.+ .|+|.+||++++|+
T Consensus 246 Vi~~A~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~-~~gv~~vh~lhvWq 324 (404)
T KOG1483|consen 246 VIVSALFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLT-VPGVISVHDLHVWQ 324 (404)
T ss_pred EEEEEEEEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhc-Ccceeeeeeeeeee
Confidence 777777766653 3 999999999999999999999999999999876555568889988876 99999999999999
Q ss_pred e-cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCC
Q 016160 334 F-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 383 (394)
Q Consensus 334 ~-G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~ 383 (394)
+ |..+.+.+||.++.- .+--++++.+++.+.+. +|..++|+.|+..
T Consensus 325 L~~~r~IAt~Hi~~~~p---~~~~~~a~~ir~~fh~~-GIhs~TiqPeF~~ 371 (404)
T KOG1483|consen 325 LAGSRIIATIHIQIQNP---KEYMKIAEKIRSYFHDQ-GIHSTTIQPEFAP 371 (404)
T ss_pred eccceEEEEEEEEecCc---HHHHHHHHHHHHHHHhc-CCcceeeccchhh
Confidence 9 666999999999632 23348889998888865 8989999877765
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.85 E-value=1e-20 Score=179.57 Aligned_cols=209 Identities=15% Similarity=0.127 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHH
Q 016160 100 RSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVF 179 (394)
Q Consensus 100 ~~~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~ 179 (394)
+...+++-.++++|.+-+.+|+.+|+.|||-+++|+++||++|..+++++.++++.+.+.||..|||||.++.++..+|.
T Consensus 203 k~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLIS 282 (503)
T KOG2802|consen 203 KGSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLIS 282 (503)
T ss_pred cCCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHh
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHH-------------------HHHHHHhcCh
Q 016160 180 ASVMATLGLQI-ILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLL-------------------VVYCRAFTNE 239 (394)
Q Consensus 180 s~~m~~~~~~i-l~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l-------------------~~~~~~~~s~ 239 (394)
|+.++++|..+ ++.+++.|+++++- ++..|+..+...+++..... +-|.++.++|
T Consensus 283 gvGIfc~G~GlSiyhGv~gLlhpePi-----~~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DP 357 (503)
T KOG2802|consen 283 GVGIFCMGCGLSIYHGVMGLLHPEPI-----ESLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDP 357 (503)
T ss_pred ccceeeecccchhhhccccccCCCCC-----cchHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCC
Confidence 99988888764 89999999999884 34577777766665554332 3333334555
Q ss_pred hHHHhHHHHHhHHHHH-HHHHHHHHH--Hhhh-hhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 016160 240 IVKAYAQDHFFDVITN-IIGLVAVLL--ANYI-DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYL 315 (394)
Q Consensus 240 ~l~a~a~~~~~D~~~n-~~~i~~~~~--~~~~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~ 315 (394)
...+.. ..|...- .++|.++.. ..++ ++..|++|+++|+.++...
T Consensus 358 s~nvVl---~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV---------------------------- 406 (503)
T KOG2802|consen 358 STNVVL---LEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV---------------------------- 406 (503)
T ss_pred cceEEE---ecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH----------------------------
Confidence 544432 2233221 122222221 2233 4899999999887654322
Q ss_pred HHhcCCCcccceeEEEeeecCe-EEEEEEEEeCCCCC
Q 016160 316 CWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMP 351 (394)
Q Consensus 316 ~~~~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~ 351 (394)
+.+++|++..-.|+. .....+|.++..+-
T Consensus 407 -------e~diyDvK~~diG~g~vRfKAE~DFdGr~v 436 (503)
T KOG2802|consen 407 -------ENDIYDVKATDIGLGKVRFKAEVDFDGRVV 436 (503)
T ss_pred -------HHhhhhccceeeccceeEEEEEeccCchhh
Confidence 123788999999997 77888888887653
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.35 E-value=5.3e-06 Score=80.68 Aligned_cols=98 Identities=20% Similarity=0.226 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHH
Q 016160 101 SETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFA 180 (394)
Q Consensus 101 ~~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s 180 (394)
..-.+..+++++|..++.++...+..+||.+|.||+.|+..|+++++..+++.... -+|+..++++++++.+
T Consensus 118 ~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~--------~~g~~~lD~i~a~~I~ 189 (304)
T COG0053 118 LALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGS--------LLGWPWLDPLAALLIS 189 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHH--------HhCcHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999998742 2378889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccc
Q 016160 181 SVMATLGLQIILESLRTLVSNEDQFN 206 (394)
Q Consensus 181 ~~m~~~~~~il~esi~~L~~~~~~~~ 206 (394)
++++..|+.++++++..|++...+++
T Consensus 190 ~~Il~~~~~~~~~s~~~L~d~~~~~~ 215 (304)
T COG0053 190 LYILKTGFRLFKESVNELMDAALDPE 215 (304)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCHH
Confidence 99999999999999999998665443
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.23 E-value=1.2e-05 Score=76.60 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 016160 104 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVM 183 (394)
Q Consensus 104 ~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~m 183 (394)
.+..+++++|.+++..+...+...+|.++.|++.|++.|+++++..+++...+. +|+..+|++++++.++++
T Consensus 98 ~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i 169 (268)
T TIGR01297 98 IVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLI 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999887763 467899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 016160 184 ATLGLQIILESLRTLVSNED 203 (394)
Q Consensus 184 ~~~~~~il~esi~~L~~~~~ 203 (394)
+..++.+++++++.|++..+
T Consensus 170 ~~~~~~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 170 LYTAFRLLKESINVLLDAAP 189 (268)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998776
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.20 E-value=1.9e-05 Score=76.68 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 016160 104 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVM 183 (394)
Q Consensus 104 ~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~m 183 (394)
.+..+++++|.++...+...+..++|.++.||+.|+..|+++++.++++...+. +|+..+|++++++.++++
T Consensus 119 ~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~i 190 (299)
T PRK09509 119 IVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYI 190 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHH
Confidence 345677888998888888888899999999999999999999999888887652 377889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 016160 184 ATLGLQIILESLRTLVSNED 203 (394)
Q Consensus 184 ~~~~~~il~esi~~L~~~~~ 203 (394)
+..++.+++++++.|++..+
T Consensus 191 l~~~~~i~~~~~~~Ll~~~~ 210 (299)
T PRK09509 191 LYSALRMGYEAVQSLLDRAL 210 (299)
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 99999999999999998765
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.46 E-value=0.0011 Score=64.94 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 016160 107 RISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATL 186 (394)
Q Consensus 107 ~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~m~~~ 186 (394)
..++++|++++.... -+-..+|.++.|+++|.+.|+++++.++++...... .|+.-++|+++++++++++..
T Consensus 129 ~~~~~~~~~~~~~~~-~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~ 200 (312)
T PRK03557 129 VAGLLANILSFWLLH-HGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRS 200 (312)
T ss_pred HHHHHHHHHHHHHHh-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHH
Confidence 455666765544332 234468899999999999999999998887755432 244459999999999999999
Q ss_pred HHHHHHHHHHHhhcCCc
Q 016160 187 GLQIILESLRTLVSNED 203 (394)
Q Consensus 187 ~~~il~esi~~L~~~~~ 203 (394)
++.++++++..|++..+
T Consensus 201 ~~~l~~~~~~~Lld~~p 217 (312)
T PRK03557 201 AWRLLKESVNELLEGAP 217 (312)
T ss_pred HHHHHHHHHHHHHccCC
Confidence 99999999999998766
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.004 Score=61.99 Aligned_cols=95 Identities=20% Similarity=0.229 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 016160 104 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVM 183 (394)
Q Consensus 104 ~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~m 183 (394)
+.+.+++....+.+.+-.+++..++|-.+.|-|.|-..|++++.+.+++...+-.- +.-++|+|+++++..+
T Consensus 231 ~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~--------~~~lDP~gailVS~~i 302 (412)
T KOG1485|consen 231 WLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYY--------NYWLDPIGAILVSTYI 302 (412)
T ss_pred hhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh--------hhcccchhhhhhheeh
Confidence 55556677778888888899999999999999999999999999999999886542 2458999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccc
Q 016160 184 ATLGLQIILESLRTLVSNEDQFN 206 (394)
Q Consensus 184 ~~~~~~il~esi~~L~~~~~~~~ 206 (394)
+..++....+++..|++...+|+
T Consensus 303 i~t~~~t~~~~i~~Lvg~~a~pe 325 (412)
T KOG1485|consen 303 IYTGGRTGLENIKELVGRSAPPE 325 (412)
T ss_pred hhhhhHHHHHHHHHHhCCCCCHH
Confidence 99999999999999998865444
No 18
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=95.75 E-value=0.009 Score=57.18 Aligned_cols=92 Identities=23% Similarity=0.233 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--hHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchh-HHHHHHHHHHHHH
Q 016160 106 IRISNVANMVLFAAKVYASVKSG--SLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKK-RMQPLGILVFASV 182 (394)
Q Consensus 106 l~~si~~n~~l~i~k~~a~~~s~--S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~-R~E~l~~li~s~~ 182 (394)
..+++++|.+++....-.+-..+ |.++.+++.|++.|.+.++.++++.....-.+ .. -+|++++++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~~-------~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLGP-------WFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHHh-------cccccchhhhhHHHHH
Confidence 56777888888877777666666 99999999999999999998888876644332 22 3899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcc
Q 016160 183 MATLGLQIILESLRTLVSNEDQ 204 (394)
Q Consensus 183 m~~~~~~il~esi~~L~~~~~~ 204 (394)
++..++.++++++..|++..++
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~~~ 203 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDASPD 203 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-SHH
T ss_pred Hhhhhhhchhhhhccccccccc
Confidence 9999999999999999988753
No 19
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=92.55 E-value=0.63 Score=45.02 Aligned_cols=91 Identities=20% Similarity=0.198 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 016160 104 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVM 183 (394)
Q Consensus 104 ~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~m 183 (394)
.+-.+++++|++.+..-.-. -..++-+-+--+|.+.|++.++...++.-.... +|+...+|+.+++.++++
T Consensus 129 ~va~~GL~vN~~~a~ll~~~--~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~-------~~w~~~Dpi~si~i~~li 199 (296)
T COG1230 129 VVAIIGLVVNLVSALLLHKG--HEENLNMRGAYLHVLGDALGSVGVIIAAIVIRF-------TGWSWLDPILSIVIALLI 199 (296)
T ss_pred HHHHHHHHHHHHHHHHhhCC--CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCccchHHHHHHHHHH
Confidence 34445566676655443322 223788889999999999999988887655432 255558999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 016160 184 ATLGLQIILESLRTLVSNED 203 (394)
Q Consensus 184 ~~~~~~il~esi~~L~~~~~ 203 (394)
+-.+..+++++.+-|+++.+
T Consensus 200 l~~a~~l~k~s~~iLle~~P 219 (296)
T COG1230 200 LSSAWPLLKESLNILLEGVP 219 (296)
T ss_pred HHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999998877
No 20
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=90.05 E-value=4.1 Score=31.79 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=34.4
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhcccHH---HHHHHHHHHHHHHHHHH
Q 016160 248 HFFDVITNIIGLVAVLLANYIDDWMDPV---GAIILALYTIRTWSMTV 292 (394)
Q Consensus 248 ~~~D~~~n~~~i~~~~~~~~~~~~~Dpi---~aiiIa~~ii~~~~~~~ 292 (394)
...|.+.+.++++.+.+....+|-+||+ +-++.+...+.-++..+
T Consensus 34 Rd~D~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~i 81 (84)
T PF07444_consen 34 RDYDIFFSSVGLLYGLILWFQGWRLDPILLFGQMLLVGLLIFFGWETI 81 (84)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998888889999999 55556666665555544
No 21
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=87.94 E-value=5.2 Score=32.21 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=37.2
Q ss_pred eEEEeee-cCeEEEEEEEEeCCCCCHHH-HHHHHHHHHHHHhcCC--CccEEEEEEe
Q 016160 328 TVRAYTF-GSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP--EIERAFVHLD 380 (394)
Q Consensus 328 ~vr~~~~-G~~~~vev~I~v~~~~~l~~-ah~I~~~lq~~l~~~~--~V~~v~Vhid 380 (394)
.+++..- +..+.+++++.+....++.+ +.++.+++++.++++- .|.++.|+++
T Consensus 49 ~v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 49 GVKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred CeEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 3556544 67799999999988877654 6667777777776543 4667777764
No 22
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=87.12 E-value=10 Score=35.55 Aligned_cols=86 Identities=16% Similarity=0.116 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhHHHhHHHHHhHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHH
Q 016160 213 QWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTV 292 (394)
Q Consensus 213 ~~~i~i~~~~~vv~~~l~~~~~~~~s~~l~a~a~~~~~D~~~n~~~i~~~~~~~~~~~~~Dpi~aiiIa~~ii~~~~~~~ 292 (394)
..+......+.++...=....|+.+..+.--.-.|.+.|.++ +|+.-+.+.+.....-.+.+-++-.+|++...+|+.
T Consensus 36 ~~a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~Vs--FgVaPA~l~y~~~~~~~~~~~~~a~~~~~~~alRLA 113 (234)
T COG1183 36 EAALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVS--FGVAPALLLYSSGLNTGPLGLLAALLYVLCGALRLA 113 (234)
T ss_pred HHHHHHHHHHHHHcccchHHHHhcCCcchHHHHHhHHHHHHH--hhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777778888766666777889999986 688777777666544478999999999999999999
Q ss_pred HHHHHhhh
Q 016160 293 LENVNSLV 300 (394)
Q Consensus 293 ~e~~~~Ll 300 (394)
+-|+..--
T Consensus 114 rFN~~~~~ 121 (234)
T COG1183 114 RFNVKTND 121 (234)
T ss_pred HccCcccC
Confidence 98877443
No 23
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=82.87 E-value=15 Score=29.03 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCC--HHHHHHHHHHHHHHHhcCCCccEEEEEEecCCC-CC
Q 016160 310 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMP--LQEAHDIGESLQEKLELLPEIERAFVHLDYEYT-HR 386 (394)
Q Consensus 310 ~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~--l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~-~~ 386 (394)
..|..++.+ .|++..-..+.+.+-|..=.+.+.|++.++.+ ..+..++.++|+++|++.-++ ++-|++-+..+ .+
T Consensus 7 ~~Ie~vl~~-~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv-~~~V~lv~~gtLpr 84 (96)
T PF14535_consen 7 SQIEEVLRE-FPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV-RPEVELVPPGTLPR 84 (96)
T ss_dssp HHHHHHHCT-STTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-TT-S--
T ss_pred HHHHHHHHh-CcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc-eEEEEEECCCCccC
Confidence 467778876 68888777888888888778889999988764 467888889999999754466 45677666543 44
Q ss_pred Cccc
Q 016160 387 PEHA 390 (394)
Q Consensus 387 ~eh~ 390 (394)
.+.|
T Consensus 85 ~~~K 88 (96)
T PF14535_consen 85 SEGK 88 (96)
T ss_dssp -SSS
T ss_pred CCCc
Confidence 4554
No 24
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=81.25 E-value=29 Score=31.20 Aligned_cols=101 Identities=8% Similarity=0.144 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHhHHHHHhHHHHHHHH---
Q 016160 183 MATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFT-NEIVKAYAQDHFFDVITNIIG--- 258 (394)
Q Consensus 183 m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~~~-s~~l~a~a~~~~~D~~~n~~~--- 258 (394)
++++|+..+..++..++.... +.. .....+..++++.+....++.|..+.+ +.+.+-.....+.-...+.+.
T Consensus 102 Ll~lg~~aLlsgitaff~~nA-~~~---GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~ 177 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNA-QVY---GLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIA 177 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-cch---hHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHH
Confidence 445566666777888887665 211 112223334444455566666655432 323222222222111111110
Q ss_pred --HHHHHHHhhhhhcccHHHHHHHHHHHHHH
Q 016160 259 --LVAVLLANYIDDWMDPVGAIILALYTIRT 287 (394)
Q Consensus 259 --i~~~~~~~~~~~~~Dpi~aiiIa~~ii~~ 287 (394)
++.+.+-..+++-+||+.-.+++..++..
T Consensus 178 v~i~t~~lPtslN~~L~pi~l~IiGav~lal 208 (226)
T COG4858 178 VMIATVFLPTSLNPQLPPIALTIIGAVILAL 208 (226)
T ss_pred HHHHHhhCCCcCCcCCchHHHHHHHHHHHHH
Confidence 11111112235789999988888777654
No 25
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=81.00 E-value=56 Score=31.84 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=40.0
Q ss_pred HhHHHHHHHHHHHHHHHhhh---------hhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 016160 249 FFDVITNIIGLVAVLLANYI---------DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGR 302 (394)
Q Consensus 249 ~~D~~~n~~~i~~~~~~~~~---------~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~ 302 (394)
..+++++.+|++.+++...+ .+++-++.++++++++.+.++.+.......++--
T Consensus 78 ~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l 140 (356)
T COG4956 78 VTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLRL 140 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHh
Confidence 45666666666666554433 2588999999999999999999988877777643
No 26
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=80.81 E-value=14 Score=32.52 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEEecCC
Q 016160 307 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEY 383 (394)
Q Consensus 307 e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~-~~~V~~v~Vhid~~~ 383 (394)
+.-++|...+. .+.+|++..+.-.|...+|-+++ +.+..-..+.+|.+++.+++++ .|.+.+|+|.-||+.
T Consensus 54 ~~A~~Ia~~v~----~v~~V~dA~vvVtg~~A~Vgv~~--~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd~ 125 (158)
T TIGR02898 54 DVADEIASEAA----KVKGVKDATVVITGNYAYVGVDL--TNGLEGSVTDELKEKVAETVKSTDNRIANVYVSADPDT 125 (158)
T ss_pred HHHHHHHHHHh----cCCCCceEEEEEECCEEEEEEEc--CCCcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHHH
Confidence 34445555554 46667788888889987777654 4444445678899999999997 999999999999873
No 27
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=79.90 E-value=40 Score=29.30 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhHHHhHHHHHhHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHH
Q 016160 213 QWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTV 292 (394)
Q Consensus 213 ~~~i~i~~~~~vv~~~l~~~~~~~~s~~l~a~a~~~~~D~~~n~~~i~~~~~~~~~~~~~Dpi~aiiIa~~ii~~~~~~~ 292 (394)
.++.+....+.+...+=....|+.+..+-.-...|...|.++ +|++-+.+..... ...+.+.++..++++...+|+.
T Consensus 21 ~~a~~~l~~a~~~D~~DG~vAR~~~~~s~~G~~lDsl~D~vs--fgvaPa~l~~~~~-~~~~~~~~~~~~~~l~~a~RLA 97 (151)
T TIGR00473 21 VRACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVS--FGVAPAALAYSIG-NFQTIGILVAALFFLCGILRLA 97 (151)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHcCCCChHHHHHHHHHHHHH--HHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHH
Confidence 344455555666777767777777755666667788999986 5666666554432 2334455555678999999999
Q ss_pred HHHHHh
Q 016160 293 LENVNS 298 (394)
Q Consensus 293 ~e~~~~ 298 (394)
+-|+..
T Consensus 98 rFN~~~ 103 (151)
T TIGR00473 98 RFNVLN 103 (151)
T ss_pred Hhcccc
Confidence 998763
No 28
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=76.67 E-value=15 Score=32.50 Aligned_cols=68 Identities=12% Similarity=0.227 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCccEEEEEEecC
Q 016160 307 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYE 382 (394)
Q Consensus 307 e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~-~~~V~~v~Vhid~~ 382 (394)
+..++|...+.+ +.+|.+..+.-.|...+|-+++.-. -....+|.+++++++++ .|.+.+|+|.-||.
T Consensus 75 ~~a~~i~~~v~~----~~~V~~A~vvv~~~~a~Vav~~~~~----~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~ 143 (177)
T PF09580_consen 75 QLADRIANRVKK----VPGVEDATVVVTDDNAYVAVDLDFN----RFNTKKIKKKVEKAVKSADPRIYNVYVSTDPD 143 (177)
T ss_pred HHHHHHHHHHhc----CCCceEEEEEEECCEEEEEEEeccc----ccchhHHHHHHHHHHHHhCCCccEEEEEcCHH
Confidence 445666666654 5667788888889999998888833 23467899999999986 79999999998886
No 29
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=74.81 E-value=1.6e+02 Score=33.64 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=40.2
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEec
Q 016160 337 HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 381 (394)
Q Consensus 337 ~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~ 381 (394)
.-.+.+++.+|++.++++..++.+++++.|++.|+|++++..+-.
T Consensus 558 ~~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v~s~vG~ 602 (1021)
T PF00873_consen 558 RGEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSVSSRVGR 602 (1021)
T ss_dssp TSEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEEEEEESE
T ss_pred CCceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhccceEecc
Confidence 356899999999999999999999999999999999999988865
No 30
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=73.62 E-value=70 Score=31.56 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhHHHhHHHHHhHHHHHHHHHHHHHHHhhh-------h-hcccHHHHHHHHHHHHHH
Q 016160 216 VGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI-------D-DWMDPVGAIILALYTIRT 287 (394)
Q Consensus 216 i~i~~~~~vv~~~l~~~~~~~~s~~l~a~a~~~~~D~~~n~~~i~~~~~~~~~-------~-~~~Dpi~aiiIa~~ii~~ 287 (394)
....+......++..+|+-..+|-.+.+++.+.+.|.....+++.+..+..+- + -.+..+++..=+++.+..
T Consensus 38 f~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~ 117 (354)
T KOG1484|consen 38 FLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLI 117 (354)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHH
Confidence 44455556666777777777888899999999999999888777777665432 1 256666777778888889
Q ss_pred HHHHHHHHHHhhhC
Q 016160 288 WSMTVLENVNSLVG 301 (394)
Q Consensus 288 ~~~~~~e~~~~Llg 301 (394)
+..+..|++..|++
T Consensus 118 a~fi~~Es~eRl~~ 131 (354)
T KOG1484|consen 118 AFFIFSESVERLFD 131 (354)
T ss_pred HHHHhHHHHHHhcC
Confidence 99999999999986
No 31
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=66.79 E-value=11 Score=27.94 Aligned_cols=47 Identities=30% Similarity=0.453 Sum_probs=29.5
Q ss_pred eEEEeeecCeEEEEEEEEeC-CCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 016160 328 TVRAYTFGSHYFVEVDIVLP-ASMPLQEAHDIGESLQEKLELLPEIERAFV 377 (394)
Q Consensus 328 ~vr~~~~G~~~~vev~I~v~-~~~~l~~ah~I~~~lq~~l~~~~~V~~v~V 377 (394)
-++--...+ -.|.+.+.++ +..+ ....+.++++++|+.+|+|..|.|
T Consensus 25 ~V~~i~i~~-~~V~v~l~l~~~~~~--~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 25 MVRDISIEG-GKVSVSLELPTPACP--AAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp SEEEEEECT-CEEEEEE--SSTTHT--THHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CeeEEEEEC-CEEEEEEEECCCCch--HHHHHHHHHHHHHHhCCCCceEeC
Confidence 333333433 3455556665 4444 467899999999999999988765
No 32
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=63.73 E-value=71 Score=25.17 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=34.1
Q ss_pred EEEEEEeCC-CCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCcc
Q 016160 340 VEVDIVLPA-SMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRPEH 389 (394)
Q Consensus 340 vev~I~v~~-~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~~~~eh 389 (394)
+.+.+.++. ..+ ....+.+.+++.+..+|+++.+.|.++....-.++|
T Consensus 39 v~i~l~l~~p~~~--~~~~l~~~i~~al~~l~gv~~v~v~i~~~~~~~~~~ 87 (99)
T TIGR02945 39 VDIQMTLTAPNCP--VAGSMPGEVENAVRAVPGVGSVTVELVWDPPWTPER 87 (99)
T ss_pred EEEEEEECCCCCC--hHHHHHHHHHHHHHhCCCCceEEEEEEeeCCCChHH
Confidence 555555542 233 345688999999999999999998888776665554
No 33
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=61.76 E-value=40 Score=27.69 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=39.1
Q ss_pred HHhhhCCCCCHH-----HHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEe
Q 016160 296 VNSLVGRSAAPE-----YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVL 346 (394)
Q Consensus 296 ~~~Llg~s~~~e-----~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v 346 (394)
...|+|+..|++ ....|+..+.. +|.|.+|+++.+..-|..+.+.++|..
T Consensus 53 le~lig~~~~~~~~~sEi~r~I~EaL~~-d~rI~~V~~f~f~~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 53 LEDLIGKNYPREYVESEIEREIEEALLQ-DPRITSVENFSFEWEGDSLYVSFTVTT 107 (112)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhc-CCCcceEEEEEEEEECCEEEEEEEEEE
Confidence 456788755543 35567777765 899999999999999999999988865
No 34
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.64 E-value=25 Score=26.17 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 016160 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 368 (394)
Q Consensus 306 ~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~ 368 (394)
|...+++.+.+.++. -.|.+++....+..+...+.+.+|++.++ .++.+.++...++
T Consensus 10 pGiv~~vt~~la~~~---~nI~dl~~~~~~~~f~~~~~v~~p~~~~~---~~l~~~l~~l~~~ 66 (75)
T cd04870 10 PGLTSALTEVLAAHG---VRILDVGQAVIHGRLSLGILVQIPDSADS---EALLKDLLFKAHE 66 (75)
T ss_pred CCHHHHHHHHHHHCC---CCEEecccEEEcCeeEEEEEEEcCCCCCH---HHHHHHHHHHHHH
Confidence 567889999997643 34666666666777777888888887654 3455555555543
No 35
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=57.58 E-value=29 Score=25.28 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEE
Q 016160 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERA 375 (394)
Q Consensus 306 ~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v 375 (394)
|..+++|..+..+ .+ ..|+++.+......-...+.++++.+ ++..+.|.++|+++++|.+|
T Consensus 3 ~GvL~Ri~~vf~r--Rg-~nI~sl~v~~~~~~~~~riti~v~~~------~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 3 PGVLNRITGVFRR--RG-FNIESLSVGPTEDPGISRITIVVSGD------DREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp TTHHHHHHHHHHT--TT--EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHCSTTEEEE
T ss_pred cHHHHHHHHHHhc--CC-eEEeeEEeeecCCCCEEEEEEEEeeC------chhHHHHHHHHhccCCeEeC
Confidence 4578888888864 33 56788888775555556666666652 12346688999999998654
No 36
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=56.96 E-value=72 Score=25.22 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=18.6
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHH
Q 016160 338 YFVEVDIVLPASMPLQEAHDIGE 360 (394)
Q Consensus 338 ~~vev~I~v~~~~~l~~ah~I~~ 360 (394)
+.|+++|.+|++|+.+++.++..
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a 24 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKA 24 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHH
Confidence 56888999999999888887643
No 37
>PRK14637 hypothetical protein; Provisional
Probab=55.55 E-value=50 Score=28.70 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCC
Q 016160 308 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 387 (394)
Q Consensus 308 ~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~~~~ 387 (394)
+.+.+..++.+ -+ ..+.++.....|....+.+.|.=+..+++.++.++++.|...|....+...-+.+|--..-.+|
T Consensus 10 ~~~~v~p~~~~--~g-~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldRp 86 (151)
T PRK14637 10 YFSECEPVVEG--LG-CKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIERV 86 (151)
T ss_pred HHHHHHHHHHh--cC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCC
Confidence 45566666654 23 4567888888888888888887777899999999999999998753223344455544444444
No 38
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.85 E-value=75 Score=27.72 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=47.4
Q ss_pred ccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc-EEEEEEecCCCCCC
Q 016160 324 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE-RAFVHLDYEYTHRP 387 (394)
Q Consensus 324 ~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~-~v~Vhid~~~~~~~ 387 (394)
..+-++.....|+...+.+.|.=+..++++++.++++.+...|..-.++. .-+.++--.+-.+|
T Consensus 23 ~ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGldRp 87 (153)
T COG0779 23 FELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLDRP 87 (153)
T ss_pred cEEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCCCC
Confidence 35668888888998999998888899999999999999999997433333 33344444444444
No 39
>PRK14635 hypothetical protein; Provisional
Probab=53.85 E-value=95 Score=27.27 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=43.7
Q ss_pred ccceeEEEeeecCeEEEEEEEEe----CCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCC
Q 016160 324 RHIDTVRAYTFGSHYFVEVDIVL----PASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRP 387 (394)
Q Consensus 324 ~~i~~vr~~~~G~~~~vev~I~v----~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~~~~ 387 (394)
..+.++.....|....+.|.|.- +..+++.++..+++.+...|........-+..|--..-.+|
T Consensus 20 ~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGldRp 87 (162)
T PRK14635 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISPDLDFTLKVSSAGAERK 87 (162)
T ss_pred CEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCCCc
Confidence 45678888888888888888864 24599999999999999999742223444444444443443
No 40
>PRK14646 hypothetical protein; Provisional
Probab=51.54 E-value=90 Score=27.23 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=37.4
Q ss_pred ccceeEEEeeecCeEEEEEEEEeCC--CCCHHHHHHHHHHHHHHHhcC
Q 016160 324 RHIDTVRAYTFGSHYFVEVDIVLPA--SMPLQEAHDIGESLQEKLELL 369 (394)
Q Consensus 324 ~~i~~vr~~~~G~~~~vev~I~v~~--~~~l~~ah~I~~~lq~~l~~~ 369 (394)
..+.++....-|....+.+.|.=+. .+++.++..+++.|...|...
T Consensus 22 ~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~ 69 (155)
T PRK14646 22 LKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENS 69 (155)
T ss_pred CEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcC
Confidence 4567888888888888888887653 499999999999999999643
No 41
>PRK10263 DNA translocase FtsK; Provisional
Probab=51.45 E-value=3.5e+02 Score=31.86 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHH
Q 016160 256 IIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTV 292 (394)
Q Consensus 256 ~~~i~~~~~~~~~~~~~Dpi~aiiIa~~ii~~~~~~~ 292 (394)
.+|+++.+++..+.+++-.+|+.++.+.++..++-++
T Consensus 142 gGGIIG~lLs~lL~~LfG~vGa~LILLlllLIGLiLl 178 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLF 178 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777677777776666555555444433
No 42
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.32 E-value=25 Score=28.72 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCC
Q 016160 351 PLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 384 (394)
Q Consensus 351 ~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~ 384 (394)
+..-+..+...|++.|+-.|-|+++-||||++..
T Consensus 35 s~~~a~~le~aI~esi~~QP~v~daeV~Id~~~~ 68 (116)
T COG2098 35 SPGTAESLEKAIEESIKVQPFVEDAEVKIDRDKE 68 (116)
T ss_pred CccchHHHHHHHHHHHhcCCceeeEEEEeccccc
Confidence 3445777888888899889999999999999843
No 43
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=51.27 E-value=1.4e+02 Score=24.61 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCC
Q 016160 348 ASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 383 (394)
Q Consensus 348 ~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~ 383 (394)
+..++ +..+.+++++++++.++|+.+.|.+..+.
T Consensus 60 ~gCP~--~~~i~~~v~~al~~~~~v~~v~V~l~~~p 93 (111)
T COG2151 60 PGCPL--AEVIADQVEAALEEIPGVEDVEVELTLSP 93 (111)
T ss_pred CCCCc--cHHHHHHHHHHHHhcCCcceEEEEEEEcC
Confidence 44565 68899999999999999999999988775
No 44
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=51.12 E-value=1.2e+02 Score=23.94 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCc
Q 016160 98 LARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPI 166 (394)
Q Consensus 98 ~~~~~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~ 166 (394)
.++..+.++...+...+...+..+..... .+...+...+-.+.-++..+...++...+.+....+||+
T Consensus 37 vr~ha~qal~~~i~~~i~~~i~~~l~~~~-~~~~~i~~~~~~~~~l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 37 VRFHAKQALNFQITFLIISIILFILSFIL-IFFIGIGILLLIVLWLLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeecCe
Confidence 34445555555554444433333333322 111112222222223344455555666677778888886
No 45
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=50.30 E-value=75 Score=28.32 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhc-CCCc-------ccceeEEEeeec-CeEEEEEEEEeCC-CCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 016160 308 YLQKLTYLCWNH-HKSI-------RHIDTVRAYTFG-SHYFVEVDIVLPA-SMPLQEAHDIGESLQEKLELLPEIERAFV 377 (394)
Q Consensus 308 ~~~~I~~~~~~~-~~~V-------~~i~~vr~~~~G-~~~~vev~I~v~~-~~~l~~ah~I~~~lq~~l~~~~~V~~v~V 377 (394)
..++|.+.+.+. +|++ .-|+++.+...+ .+-.|.+.+.++. ..+ ....+.+.++++|+++|+|+.+.|
T Consensus 74 ~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~--~~~~L~~dV~~aL~~l~gV~~V~V 151 (174)
T TIGR03406 74 NEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCG--MGPVLVEDVEDKVLAVPNVDEVEV 151 (174)
T ss_pred cHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCc--HHHHHHHHHHHHHHhCCCceeEEE
Confidence 345666666543 2321 123444444311 1113556666643 233 357788999999999999999999
Q ss_pred EEecCCCC
Q 016160 378 HLDYEYTH 385 (394)
Q Consensus 378 hid~~~~~ 385 (394)
.+.++..=
T Consensus 152 ~l~~dp~W 159 (174)
T TIGR03406 152 ELVFDPPW 159 (174)
T ss_pred EEEecCCC
Confidence 98877543
No 46
>PRK14647 hypothetical protein; Provisional
Probab=49.06 E-value=1.2e+02 Score=26.55 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=39.6
Q ss_pred ccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 016160 324 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 372 (394)
Q Consensus 324 ~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V 372 (394)
..+.++.....|....+.+.|.-+...++.++..+++.|...|.....+
T Consensus 23 ~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~d~i 71 (159)
T PRK14647 23 LELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVEDFI 71 (159)
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHcccccC
Confidence 3466788888888778888888788899999999999999999754333
No 47
>PRK00907 hypothetical protein; Provisional
Probab=48.94 E-value=87 Score=24.84 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=40.7
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeee--cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 016160 299 LVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 373 (394)
Q Consensus 299 Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~--G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~ 373 (394)
.+|. +.+++.+.|..++.+|.|+... .++..+.. |...-+.+.|.+.. -+|.++ |=+.|.+.|.|.
T Consensus 22 VmG~-a~~~l~~~V~~vv~~h~p~~~~-~~i~~r~Ss~GkY~Svtv~i~ats---~eQld~----iY~~L~~~~~Vk 89 (92)
T PRK00907 22 AMGT-AERGLETELPRLLAATGVELLQ-ERISWKHSSSGKYVSVRIGFRAES---REQYDA----AHQALRDHPEVK 89 (92)
T ss_pred EEEc-CchhHHHHHHHHHHHhCCCCCc-CcEEeccCCCCEEEEEEEEEEECC---HHHHHH----HHHHHhhCCCEE
Confidence 3564 5688999999999998776542 45544544 44455666666553 344444 444556667663
No 48
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.09 E-value=1.1e+02 Score=22.21 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEeee-cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 016160 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 377 (394)
Q Consensus 306 ~e~~~~I~~~~~~~~~~V~~i~~vr~~~~-G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~V 377 (394)
+..+.+|...+.++.-.| ..+..... +....+.+.+.+.. ..+-.+++-++|+++|+|.+|.+
T Consensus 11 ~g~l~~I~~~la~~~inI---~~i~~~~~~~~~~~i~~~v~v~~------~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 11 PGVLSKVLNTIAQVRGNV---LTINQNIPIHGRANVTISIDTST------MNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred CchHHHHHHHHHHcCCCE---EEEEeCCCCCCeEEEEEEEEcCc------hHHHHHHHHHHHhcCCCeEEEEE
Confidence 567888888887644334 33333221 22345555565543 22345677888899999988754
No 49
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.68 E-value=96 Score=22.80 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh
Q 016160 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE 367 (394)
Q Consensus 306 ~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~ 367 (394)
|..+.++..++.++ =.+|++.++.+.+.++.+++-.+.+++-......+-.+++++.|+
T Consensus 12 ~gLl~~i~~~l~~~---~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~ 70 (73)
T cd04900 12 PGLFARIAGALDQL---GLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALE 70 (73)
T ss_pred CCHHHHHHHHHHHC---CCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 56788888888763 256888899888777777766666654322112233344444443
No 50
>PRK14634 hypothetical protein; Provisional
Probab=46.56 E-value=1.6e+02 Score=25.73 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=39.7
Q ss_pred ccceeEEEeeecCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCc
Q 016160 324 RHIDTVRAYTFGSHYFVEVDIVLPAS--MPLQEAHDIGESLQEKLELLPEI 372 (394)
Q Consensus 324 ~~i~~vr~~~~G~~~~vev~I~v~~~--~~l~~ah~I~~~lq~~l~~~~~V 372 (394)
..+.++.....|....+.|.|.-+.. .++.++..+++.|...|.....+
T Consensus 22 ~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i 72 (155)
T PRK14634 22 FELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLL 72 (155)
T ss_pred CEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccC
Confidence 34678888888888888888887766 99999999999999999754333
No 51
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=46.55 E-value=1.3e+02 Score=22.97 Aligned_cols=63 Identities=10% Similarity=0.195 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 377 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~V 377 (394)
.|+.++++..+..+ .+ ..|+.+.+-.....-...+.+++.. ++..++|.+.|+++++|.+|.+
T Consensus 13 ~pGVL~Ri~~lf~r--RG-fnI~sl~v~~t~~~~~sriti~v~~-------~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 13 RPEVLERVLRVVRH--RG-FQVCSMNMTQNTDAQNINIELTVAS-------ERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CccHHHHHHHHHhc--CC-eeeeeEEeeecCCCCEEEEEEEECC-------CchHHHHHHHHhcCcCeEEEEE
Confidence 46788899988854 23 4567776665544446666666653 3455788899999999977654
No 52
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=44.86 E-value=1.3e+02 Score=22.38 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEeee--cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEE
Q 016160 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERA 375 (394)
Q Consensus 306 ~e~~~~I~~~~~~~~~~V~~i~~vr~~~~--G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v 375 (394)
+..+.+|...+.++ + ..|.++.+... +....+.+.+.++. .++. +.+-++|+++|+|.+|
T Consensus 17 ~GlL~dI~~~i~~~--~-~nI~~i~~~~~~~~~~~~~~l~v~V~d---~~~L----~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 17 PGLLADITSVISEN--G-VNIRSINARTNKDDGTARITLTVEVKD---LEHL----NQIIRKLRQIPGVISV 78 (80)
T ss_dssp TTHHHHHHHHHHCS--S-SEEEEEEEEE--ETTEEEEEEEEEESS---HHHH----HHHHHHHCTSTTEEEE
T ss_pred CCHHHHHHHHHHHC--C-CCeEEEEeEEeccCCEEEEEEEEEECC---HHHH----HHHHHHHHCCCCeeEE
Confidence 46788899998763 2 45677777775 45688999999974 2333 4555677889998776
No 53
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=44.20 E-value=60 Score=32.42 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=59.7
Q ss_pred HHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 016160 130 LAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNED 203 (394)
Q Consensus 130 ~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~m~~~~~~il~esi~~L~~~~~ 203 (394)
+.+-|--+|-+.|++=++-.+++..+.+-.| +|.-.+++-.++++++.+...+.+++..+..|+++.|
T Consensus 224 ~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P------~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P 291 (379)
T KOG1482|consen 224 LNVRAAFVHVLGDLIQSVGVLIAALIIYFKP------EYKIADPICTFVFSIIVLGTTITILRDILGILMEGTP 291 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhheeEEecc------cceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCC
Confidence 7888899999999999998888887765444 4455899999999999999999999999999999887
No 54
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=41.54 E-value=60 Score=22.71 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=19.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 016160 162 YQYPIGKKRMQPLGILVFASVMATLGLQII 191 (394)
Q Consensus 162 ~~~P~G~~R~E~l~~li~s~~m~~~~~~il 191 (394)
..|-|-|+++. ++.++++.+++++|+.++
T Consensus 5 ~pF~YDy~tLr-igGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 5 DPFYYDYETLR-IGGLIFAGVLFILGILII 33 (50)
T ss_dssp SGGGGCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCccchhHhh-ccchHHHHHHHHHHHHHH
Confidence 35666777766 456777777888887654
No 55
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=41.29 E-value=1.2e+02 Score=22.82 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=21.7
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 016160 159 PNPYQYPIGKKRMQPLGILVFASVMATLGLQI 190 (394)
Q Consensus 159 ~~~~~~P~G~~R~E~l~~li~s~~m~~~~~~i 190 (394)
....++..+..++|.+-.++-++++++.++--
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~pS 81 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLAFPS 81 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHhhh
Confidence 44456777788899999999999888877654
No 56
>COG1302 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.01 E-value=2.3e+02 Score=24.11 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEee-ecCeEEEEEEEEeCCCCCHH-HHHHHHHHHHHH
Q 016160 288 WSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYT-FGSHYFVEVDIVLPASMPLQ-EAHDIGESLQEK 365 (394)
Q Consensus 288 ~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~-~G~~~~vev~I~v~~~~~l~-~ah~I~~~lq~~ 365 (394)
-..+..+.+..+.|... .+...+...+ + .+.+. +.+.+.. -+....+++.|.++-..++. -|+.|.+.++..
T Consensus 22 Iag~a~~ev~Gv~~m~~--~~~~~~~e~l-~-~~n~~--kGV~Ve~~~~~~v~VDvyi~v~YGv~IpeVa~~Iq~~V~~~ 95 (131)
T COG1302 22 IAGIAAEEVEGVVGMAG--GFKDGLTEKL-G-KENVT--KGVKVEVGEDQSVAVDVYIIVEYGVKIPEVAENIQERVKEE 95 (131)
T ss_pred HHHHHHHHcCCeeeccc--hhhhhHHHHh-C-ccccC--CCeEEEecCCCcEEEEEEEEEecCCchHHHHHHHHHHHHHH
Confidence 33445566666666432 2666677666 3 23332 3455655 34449999999998777654 478888888888
Q ss_pred HhcCCC--ccEEEEEEe
Q 016160 366 LELLPE--IERAFVHLD 380 (394)
Q Consensus 366 l~~~~~--V~~v~Vhid 380 (394)
++.+-+ |..+.||+.
T Consensus 96 v~~mtgl~v~~VNV~V~ 112 (131)
T COG1302 96 VENMTGLKVVEVNVHVV 112 (131)
T ss_pred HHHhhCCceEEEEEEEE
Confidence 876544 556677764
No 57
>PRK14641 hypothetical protein; Provisional
Probab=40.81 E-value=2.2e+02 Score=25.35 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=37.8
Q ss_pred ccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 016160 324 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 368 (394)
Q Consensus 324 ~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~ 368 (394)
..+.++.....|....+.+.|.-+..+++.++..+++.|...|..
T Consensus 24 ~eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD~ 68 (173)
T PRK14641 24 VYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEE 68 (173)
T ss_pred eEEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhCc
Confidence 346788888888888888888777779999999999999999963
No 58
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=40.27 E-value=1.6e+02 Score=23.27 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=38.4
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeee--cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 016160 300 VGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 373 (394)
Q Consensus 300 lg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~--G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~ 373 (394)
+| .+.+++.+.|.+++.+|.|+- ....+-.+.. |+..-|.+.|... +.+|.+.+ -+.|.+.+.|.
T Consensus 21 mG-~a~~~l~~~vv~vvqr~ap~~-~~~~~~~k~SSkGnY~svsI~i~A~---~~EQ~e~l----y~eL~~~~~Vk 87 (90)
T COG2921 21 MG-AAGPELEDQVVEVVQRHAPGD-YTPRVSWKPSSKGNYLSVSITIRAT---NIEQVEAL----YRELRKHEIVK 87 (90)
T ss_pred hc-ccchhHHHHHHHHHHHHCCcc-cCceeeeccCCCCceEEEEEEEEEC---CHHHHHHH----HHHHhhCCceE
Confidence 55 467899999999999987773 3355533444 4434555555443 44444443 34455555553
No 59
>PRK14639 hypothetical protein; Provisional
Probab=39.05 E-value=1.5e+02 Score=25.39 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=45.3
Q ss_pred ccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc-EEEEEEecCCCCCC
Q 016160 324 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE-RAFVHLDYEYTHRP 387 (394)
Q Consensus 324 ~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~-~v~Vhid~~~~~~~ 387 (394)
..+.++.....|....+.+.|.-+..+++.++..+++.|...|.....+. .-+..|--.+-.+|
T Consensus 12 ~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~Rp 76 (140)
T PRK14639 12 VSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERK 76 (140)
T ss_pred CEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCc
Confidence 34667777777888888888887778999999999999999997433332 22344444444444
No 60
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=38.64 E-value=3e+02 Score=24.89 Aligned_cols=6 Identities=0% Similarity=-0.402 Sum_probs=2.3
Q ss_pred HHHHhc
Q 016160 152 TAFSMQ 157 (394)
Q Consensus 152 ~~~~s~ 157 (394)
..+...
T Consensus 130 ~~~~i~ 135 (206)
T PF06570_consen 130 IFKYIY 135 (206)
T ss_pred HHHHHh
Confidence 333433
No 61
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=38.49 E-value=3.7e+02 Score=26.23 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 016160 177 LVFASVMATLGLQIILESLRTLVS 200 (394)
Q Consensus 177 li~s~~m~~~~~~il~esi~~L~~ 200 (394)
-.++..|.+.|+...+.....+.+
T Consensus 12 ~~f~~~mG~~gL~~~~~~~~~~~~ 35 (324)
T PRK10764 12 GYFGIVLGLIGLGFAWRYAAQLWP 35 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 358889999999988877665554
No 62
>PLN02601 beta-carotene hydroxylase
Probab=38.45 E-value=2.5e+02 Score=26.95 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=11.0
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 016160 247 DHFFDVITNIIGLVAVLLA 265 (394)
Q Consensus 247 ~~~~D~~~n~~~i~~~~~~ 265 (394)
.-+||++.=++++.+..+.
T Consensus 178 FE~NDlFaVifAvpAIaL~ 196 (303)
T PLN02601 178 FELNDVFAIVNAVPAIGLL 196 (303)
T ss_pred cccccchhhhhHHHHHHHH
Confidence 3478887655555444433
No 63
>PRK14638 hypothetical protein; Provisional
Probab=38.13 E-value=1.9e+02 Score=25.05 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=37.2
Q ss_pred ccceeEEEeeecCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHhcC
Q 016160 324 RHIDTVRAYTFGSHYFVEVDIVLPAS-MPLQEAHDIGESLQEKLELL 369 (394)
Q Consensus 324 ~~i~~vr~~~~G~~~~vev~I~v~~~-~~l~~ah~I~~~lq~~l~~~ 369 (394)
..+.++.....|....+.+.|.=+.. +++.++..+++.|...|...
T Consensus 23 ~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~ 69 (150)
T PRK14638 23 LEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDRE 69 (150)
T ss_pred CEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccc
Confidence 44667777787888888888876654 99999999999999999743
No 64
>PHA02975 hypothetical protein; Provisional
Probab=36.09 E-value=1.8e+02 Score=21.67 Aligned_cols=62 Identities=5% Similarity=0.183 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCccccccccchh-HHHHHHHHHHHHHHHHHHHHH
Q 016160 172 QPLGILVFASVMATLG--LQIILESLRTLVSNEDQFNLTKEQEQ-WVVGIMLSVTLVKLLLVVYCR 234 (394)
Q Consensus 172 E~l~~li~s~~m~~~~--~~il~esi~~L~~~~~~~~~~~~~~~-~~i~i~~~~~vv~~~l~~~~~ 234 (394)
|-+.+-++|++|-..- +.=+.+.++..+++..+|.-. ...+ +.++..+.++++-++++.|.+
T Consensus 2 dKLYaaiFGvFmsS~DdDF~nFI~vVksVLtdk~~~~~~-~~~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 2 EKLFTGTYGVFLESNDSDFEDFIDTIMHVLTGKKEPKKK-SSLSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHcCCCCCCcC-CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666554322 333557777777766444321 1122 233333334455556666654
No 65
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=35.62 E-value=1.1e+02 Score=25.96 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchH
Q 016160 108 ISNVANMVLFAAKVYASVKSGSL 130 (394)
Q Consensus 108 ~si~~n~~l~i~k~~a~~~s~S~ 130 (394)
+++++|+++.++-.+++.+..+.
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888887776666554433
No 66
>PRK14640 hypothetical protein; Provisional
Probab=35.38 E-value=3e+02 Score=23.85 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=39.2
Q ss_pred ccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 016160 324 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 372 (394)
Q Consensus 324 ~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V 372 (394)
..+.++.....|....+.+.|.=+..+++.++..+++.|...|.....+
T Consensus 21 ~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i 69 (152)
T PRK14640 21 FELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPI 69 (152)
T ss_pred CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccC
Confidence 3467888888888777888887777799999999999999999754333
No 67
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=34.68 E-value=1.7e+02 Score=20.95 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 016160 308 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 380 (394)
Q Consensus 308 ~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid 380 (394)
..+++.+.+.+ .|+|..++.+ .|+. +.+.+. ++. ..++.+-+.+.|.++|+|.+...++-
T Consensus 11 ~~~~~~~~l~~-~p~V~~~~~v----tG~~d~~~~v~--~~d------~~~l~~~i~~~l~~~~gV~~~~t~iv 71 (74)
T PF01037_consen 11 AYDEFAEALAE-IPEVVECYSV----TGEYDLILKVR--ARD------MEELEEFIREKLRSIPGVRRTETSIV 71 (74)
T ss_dssp HHHHHHHHHHT-STTEEEEEEE----SSSSSEEEEEE--ESS------HHHHHHHHHHTHHTSTTEEEEEEEEE
T ss_pred hHHHHHHHHHc-CCCEEEEEEE----eCCCCEEEEEE--ECC------HHHHHHHHHHHhhcCCCEEEEEEEEE
Confidence 46677777766 7887765432 2443 555544 442 24455556666889999998877764
No 68
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=34.13 E-value=3.1e+02 Score=23.67 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 016160 308 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 369 (394)
Q Consensus 308 ~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~ 369 (394)
+.+.+..++.. -+ ..+.++.....|.+..+.|.|.-+...+++++..+++.+...|...
T Consensus 9 i~~~~~~~~~~--~g-~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 9 LTELIEPVVEA--LG-YELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHHHHH--CC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 33444555543 23 3477888888888888888887777799999999999999999743
No 69
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.67 E-value=1.9e+02 Score=21.11 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCC-CCHHH
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS-MPLQE 354 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~-~~l~~ 354 (394)
.|..+++|.+.+.+|.-.|.+++.-. .+.+..++..+.+.+|+. .+..+
T Consensus 9 ~~Giv~~it~~l~~~g~nI~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~ 58 (74)
T cd04875 9 RPGIVAAVSGFLAEHGGNIVESDQFV-DPDSGRFFMRVEFELEGFDLSREA 58 (74)
T ss_pred CCCHHHHHHHHHHHcCCCEEeeeeee-cCCCCeEEEEEEEEeCCCCCCHHH
Confidence 35688999999987554455443322 245556888888888864 55543
No 70
>PRK14632 hypothetical protein; Provisional
Probab=33.21 E-value=2.6e+02 Score=24.75 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=34.5
Q ss_pred cceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 016160 325 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 369 (394)
Q Consensus 325 ~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~ 369 (394)
.+.++.... |....+.+.|.=+..+++.++..+++.|...|...
T Consensus 24 eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~ 67 (172)
T PRK14632 24 ELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVE 67 (172)
T ss_pred EEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 455666554 55677888887777899999999999999999743
No 71
>PF05105 Phage_holin_4: Holin family ; InterPro: IPR006480 This group of sequences describe one of the many mutually dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species []. This entry is represented by the Bacteriophage phi-29, Gp14 (holin). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.84 E-value=2.7e+02 Score=22.69 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHH
Q 016160 273 DPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLT 313 (394)
Q Consensus 273 Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~ 313 (394)
.|+...++..+++.....++ ||...+ |...|+-+.+.+.
T Consensus 74 ~~~~~~~~~~~i~~E~~SI~-EN~~~~-G~~iP~~l~~~l~ 112 (118)
T PF05105_consen 74 LPFRTLVIIFYILNELISIL-ENLAEM-GVPIPKWLKKFLK 112 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHh-CCCchHHHHHHHH
Confidence 46777788888888888777 888776 7655543333333
No 72
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=32.50 E-value=3.3e+02 Score=24.53 Aligned_cols=77 Identities=8% Similarity=0.023 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCCCcccce--eEEEeeecCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHh-cCCCccEEEEEE
Q 016160 305 APEYLQKLTYLCWNHHKSIRHID--TVRAYTFGSHYFVEVDIVLPAS--MPLQEAHDIGESLQEKLE-LLPEIERAFVHL 379 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~--~vr~~~~G~~~~vev~I~v~~~--~~l~~ah~I~~~lq~~l~-~~~~V~~v~Vhi 379 (394)
+++..++|..++.+.......-| ++.+..+-.+-. |.|.+... --....-.+.+.+|+.|+ ..|+|.+|.--.
T Consensus 103 ~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~--v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~~ 180 (190)
T TIGR03341 103 DAPLEERINYVLQSEINPQLASHGGKVTLVEITDDGV--AVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRDAT 180 (190)
T ss_pred chHHHHHHHHHHHhccCHHHHhcCCceEEEEEcCCCE--EEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEEec
Confidence 34467888888853232222223 555555422112 23333222 112234567789999996 589998765544
Q ss_pred ecCC
Q 016160 380 DYEY 383 (394)
Q Consensus 380 d~~~ 383 (394)
|...
T Consensus 181 ~~~~ 184 (190)
T TIGR03341 181 DHTR 184 (190)
T ss_pred Cccc
Confidence 4443
No 73
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=31.99 E-value=4.1e+02 Score=24.47 Aligned_cols=42 Identities=24% Similarity=0.132 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HhhchHHHHHhHHHhHHhHHH
Q 016160 104 LAIRISNVANMVLFAAKVYAS---VKSGSLAIIASTLDSLLDLLS 145 (394)
Q Consensus 104 ~al~~si~~n~~l~i~k~~a~---~~s~S~aL~Adaldsl~D~~s 145 (394)
+++.+-+...++++++-+..| ....+.|++-+.+--++-+++
T Consensus 105 ~AvLil~~~s~lf~~lsi~~~iCa~c~~~~ai~~~v~~~ia~l~S 149 (211)
T PF07062_consen 105 KAVLILISFSMLFALLSICFGICAPCHPSFAIFYTVLVFIAALLS 149 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Confidence 344444444555555544443 345777766655544444443
No 74
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.65 E-value=1.5e+02 Score=31.23 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh---cCCCccEEEEE
Q 016160 309 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE---LLPEIERAFVH 378 (394)
Q Consensus 309 ~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~---~~~~V~~v~Vh 378 (394)
+..+..++.. .++|.+. .+.+.|..+.|-|. |...+-.++..++..|.++|+ ++|+--.|+|-
T Consensus 439 l~~le~i~~~-~~gv~~~---~aiqaGreirv~v~---~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 504 (514)
T TIGR03319 439 LEKLEEIANS-FEGVEKS---YAIQAGREIRVMVK---PEKISDDQAVVLARDIAKKIEEELEYPGQIKVTVI 504 (514)
T ss_pred HHHHHHHHHh-CCCchhh---hhhhcCcEEEEEec---CCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 3456777755 5665544 45667997665443 445777788888888888886 47886666654
No 75
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=30.57 E-value=96 Score=34.78 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=75.2
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCC----------CCCHHHHHHHHHHHHhcCCCcccceeEEEeee-cCeE
Q 016160 270 DWMDPVGAIILALYTIRTWSMTVLENVNSLVGR----------SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHY 338 (394)
Q Consensus 270 ~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~----------s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~-G~~~ 338 (394)
.|+=.+++++++++=.+++.++-.++++.+.+. .+|+|..++|++=+++..-++.+++++|.... |-
T Consensus 13 R~lVll~~~~~~~~G~~s~~~lplDA~PD~s~~QV~I~Te~PG~sPeeVE~~iT~Plet~m~G~pg~~tvRs~S~~g~-- 90 (1027)
T COG3696 13 RLLVLLGALLLAFYGTYSLKKLPLDAFPDLSPVQVQIQTEAPGQSPEEVENQVTYPLETAMMGLPGVKTVRSISKYGL-- 90 (1027)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccccCCCCCCceEEEEecCCCCCHHHHHhhceeeehHhhcCCCCceeeeccccCCc--
Confidence 467778888888898999999999998887653 13678889999888776677888888887544 33
Q ss_pred EEEEEEEeCCCCCHHHHHH-HHHHHHHHHhcCCCc
Q 016160 339 FVEVDIVLPASMPLQEAHD-IGESLQEKLELLPEI 372 (394)
Q Consensus 339 ~vev~I~v~~~~~l~~ah~-I~~~lq~~l~~~~~V 372 (394)
-.+.|.++...++.-|-+ +.|+|++.=+++|.-
T Consensus 91 -S~VtViF~dgtDiY~ARq~V~ErL~~v~~~LP~g 124 (1027)
T COG3696 91 -SLVTVIFKDGTDLYWARQRVLERLSQVQSQLPEG 124 (1027)
T ss_pred -eEEEEEEeCCchHHHHHHHHHHHHHHHHHhCCCC
Confidence 346778888888877655 566777766778763
No 76
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=29.76 E-value=2.5e+02 Score=21.34 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEE
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERA 375 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v 375 (394)
.|+.++++..+..+ .+ ..|+.+.+-.....-.-.+.|++.++ ++..+++.++|+++.+|-+|
T Consensus 12 ~pGVL~Ri~~lf~r--Rg-fNI~Sl~vg~te~~~~sriti~~~~~------~~~i~qi~kQL~KLidV~~V 73 (76)
T PRK06737 12 DPSVLLRISGIFAR--RG-YYISSLNLNERDTSGVSEMKLTAVCT------ENEATLLVSQLKKLINVLQV 73 (76)
T ss_pred CCCHHHHHHHHHhc--cC-cceEEEEecccCCCCeeEEEEEEECC------HHHHHHHHHHHhCCcCEEEE
Confidence 46788999988854 22 45666665544444455566665443 35667889999999998665
No 77
>COG4331 Predicted membrane protein [Function unknown]
Probab=29.73 E-value=2.6e+02 Score=24.20 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhc
Q 016160 101 SETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQ 157 (394)
Q Consensus 101 ~~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~ 157 (394)
+.-|+--+++++-..+.+.|++-...+||++++. -+..|++.-++.|.-.|.-+
T Consensus 104 kklwaYPlsi~vl~lFI~YQlyr~~~t~Si~liv---lti~Dv~viiLtllEYR~lk 157 (167)
T COG4331 104 KKLWAYPLSILVLVLFILYQLYRFFNTGSISLIV---LTIFDVFVIILTLLEYRLLK 157 (167)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3445555677777888889999999999999985 67789998888888887654
No 78
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=29.18 E-value=61 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.369 Sum_probs=16.0
Q ss_pred hhcccHHHHHHHHHHHHHHHH
Q 016160 269 DDWMDPVGAIILALYTIRTWS 289 (394)
Q Consensus 269 ~~~~Dpi~aiiIa~~ii~~~~ 289 (394)
+.++||+.|+++++.-.+...
T Consensus 4 sr~lDP~~av~iG~~ayyl~e 24 (47)
T PF11654_consen 4 SRFLDPLFAVFIGTSAYYLYE 24 (47)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 468999999998876655444
No 79
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=28.58 E-value=3.9e+02 Score=30.74 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHH-HHHHHHHHHHHhcCCC
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEA-HDIGESLQEKLELLPE 371 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~a-h~I~~~lq~~l~~~~~ 371 (394)
|+++.+.|++-+++...++.+++.+..........+.+..... .+.++| .++.+++++.-.++|+
T Consensus 55 ae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~--~d~d~A~~~V~~kv~~~~~~LP~ 120 (1009)
T COG0841 55 AETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG--TDPDTAAVQVQNKIQQAESRLPS 120 (1009)
T ss_pred HHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC--CChHHHHHHHHHHHHHHHhcCCC
Confidence 3456778888888888889999999988876545444444443 333332 2455555544445765
No 80
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=28.49 E-value=5.5e+02 Score=24.81 Aligned_cols=20 Identities=5% Similarity=0.167 Sum_probs=11.0
Q ss_pred hcccHHHHHHHHHHHHHHHH
Q 016160 270 DWMDPVGAIILALYTIRTWS 289 (394)
Q Consensus 270 ~~~Dpi~aiiIa~~ii~~~~ 289 (394)
||++.+..++.++++.+.+.
T Consensus 101 w~~~~~l~l~~~~~~~~~~~ 120 (320)
T TIGR00816 101 WYIGAIGQLLFSVIVPFYLF 120 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666665555555554443
No 81
>PRK09577 multidrug efflux protein; Reviewed
Probab=28.15 E-value=1.2e+02 Score=34.84 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=36.3
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEE
Q 016160 338 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 379 (394)
Q Consensus 338 ~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhi 379 (394)
-.+.+++.+|++.++++..++.+++++.|++.|+|++++..+
T Consensus 567 ~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~~v~~~~~~~ 608 (1032)
T PRK09577 567 GNFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTFALG 608 (1032)
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCCCceEEEEEe
Confidence 345788999999999999999999999999889998876544
No 82
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=27.23 E-value=1.7e+02 Score=22.39 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=44.9
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEee------ecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 016160 299 LVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYT------FGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 369 (394)
Q Consensus 299 Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~------~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~ 369 (394)
++|+....+.+.++...+.+|.-.|.++..+.-|. ..+.+.+++++..++ . +..++.+.+.+.-+++
T Consensus 4 vlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~-~---~~~~lr~~L~~la~el 76 (84)
T cd04871 4 LLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP-A---DLEALRAALLELASEL 76 (84)
T ss_pred EEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC-C---CHHHHHHHHHHHhccc
Confidence 57887788999999999988777787777753332 123578888888655 3 3455666665443433
No 83
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=27.09 E-value=2.5e+02 Score=20.74 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 368 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~ 368 (394)
.|.....+...+.++ + -++.+++....|..+...+.+.++++ ...++...|++.-++
T Consensus 12 rpGiv~~v~~~l~~~--g-~ni~d~~~~~~~~~f~~~~~v~~~~~----~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 12 RPGIVAAVTGVLAEH--G-CNIEDSRQAVLGGRFTLIMLVSIPED----SLERLESALEELAEE 68 (76)
T ss_dssp -TTHHHHHHHHHHCT--T--EEEEEEEEEETTEEEEEEEEEESHH----HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHC--C-CcEEEEEEEEEcCeEEEEEEEEeCcc----cHHHHHHHHHHHHHH
Confidence 356788899988763 2 46788999999999988999999843 334455555544443
No 84
>PRK12704 phosphodiesterase; Provisional
Probab=26.87 E-value=1.4e+02 Score=31.35 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCC-CCCHHHHHHHHHHHHHHHh---cCCCccEEEEE
Q 016160 309 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA-SMPLQEAHDIGESLQEKLE---LLPEIERAFVH 378 (394)
Q Consensus 309 ~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~-~~~l~~ah~I~~~lq~~l~---~~~~V~~v~Vh 378 (394)
++++..++.+ .+||.+.. +.+.|..+.| .|+| ..+-.++..++..|.++|+ ++|+--.|+|-
T Consensus 445 l~~le~i~~~-~~gv~~~y---aiqaGreirv----~v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 510 (520)
T PRK12704 445 LEKLEEIANS-FEGVEKAY---AIQAGREIRV----IVKPDKVDDLQAVRLARDIAKKIEEELQYPGQIKVTVI 510 (520)
T ss_pred HHHHHHHHHh-CCcHHHHH---HHhcCceEEE----EeCCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 4567777765 57766555 5566986554 4444 4677788888899988886 47887666654
No 85
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=26.86 E-value=3.4e+02 Score=21.84 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=38.0
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCC
Q 016160 299 LVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPE 371 (394)
Q Consensus 299 Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~ 371 (394)
..|...-.+++.++...+.++.+. +..+++.+.+-|+ +.++.. +..++.++.++|.+.+++...
T Consensus 51 ~~g~~~~~~~l~~i~~~l~~~~~~-----~~~~~r~~~~~f~---ii~~~~-~~~~~~~~~~~l~~~~~~~~~ 114 (163)
T smart00267 51 TYGHAVGDELLQEVAQRLSSCLRP-----GDLLARLGGDEFA---LLLPET-SLEEAIALAERILQQLREPII 114 (163)
T ss_pred ccCchhHHHHHHHHHHHHHHhcCC-----CCEEEEecCceEE---EEecCC-CHHHHHHHHHHHHHHHhCccc
Confidence 344444455666677666554332 2346666655333 234443 677888899999998875433
No 86
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=26.44 E-value=7.2e+02 Score=25.49 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchH-----HHHHhHHHhHHhHHHHHHHHHHH-HHhcCCCCCCCCcchhHHHHH
Q 016160 101 SETLAIRISNVANMVLFAAKVYASVKSGSL-----AIIASTLDSLLDLLSGFILWFTA-FSMQTPNPYQYPIGKKRMQPL 174 (394)
Q Consensus 101 ~~~~al~~si~~n~~l~i~k~~a~~~s~S~-----aL~Adaldsl~D~~s~~i~l~~~-~~s~~~~~~~~P~G~~R~E~l 174 (394)
.+..-.+..++.|++.+++-....+..... +.+-+.+.++.|..=.+++++.. .... ..=|-||.
T Consensus 294 ~~si~~i~nl~tDli~~~~f~~l~i~~k~~l~IL~s~~~E~~Y~LSDt~KAF~IIL~TDlfVG----FHSphGWE----- 364 (422)
T PRK02507 294 YESLNAIKNVFADLFSLIAFAVVLIFSREEIEVLKSFLDEIVYGLSDSAKAFIIILFTDIFVG----FHSPHGWE----- 364 (422)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc----CCCchhHH-----
Confidence 344555666777777777666666655443 44556788888887665554432 2211 11122443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHh
Q 016160 175 GILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAY 244 (394)
Q Consensus 175 ~~li~s~~m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~~~s~~l~a~ 244 (394)
++.+++-+=++-.+.... .....+..-.+.-+++|++.+.|..|. ||+..|-
T Consensus 365 ---------------vll~~i~~HfGl~~n~~~--I~lFVaTfPViLDTiFKYWIFRyLNRi-SPS~Vat 416 (422)
T PRK02507 365 ---------------VILEGIARHFGLPENRNF--IFLFIATFPVILDTIFKYWIFRYLNRI-SPSAVAT 416 (422)
T ss_pred ---------------HHHHHHHHhcCCCcccch--HHHHHhhhhHHHHHHHHHHHHhhccCC-ChHHHHH
Confidence 334444443332221111 111112222334567788888888776 6766553
No 87
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=26.30 E-value=2.9e+02 Score=21.67 Aligned_cols=64 Identities=16% Similarity=0.065 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCcccceeEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 016160 309 LQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 378 (394)
Q Consensus 309 ~~~I~~~~~~~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vh 378 (394)
++++...+.+..+.-..+..++.--.+-+ ..+.+.++++.+- --.+.+++.|.+.++|+.+.|.
T Consensus 19 le~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~------g~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 19 LEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAE------GGTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred HHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCC------cChHHHHHHHhcCCCccEEEEE
Confidence 44444444443444445666666666666 5788888886652 1237788899988999887664
No 88
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=26.29 E-value=4.3e+02 Score=30.38 Aligned_cols=64 Identities=9% Similarity=0.086 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHH-HHHHHHHHHHHHhcCC
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 370 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~-ah~I~~~lq~~l~~~~ 370 (394)
|++..+.|++-+++...++.++++++.........+.+....+ .+..+ ..++.+++.+....+|
T Consensus 56 ~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~~--~d~~~a~~~v~~~v~~~~~~LP 120 (1025)
T PRK10614 56 PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFD--RDINGAARDVQAAINAAQSLLP 120 (1025)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC--CChHHHHHHHHHHHHHHHhhCC
Confidence 4556667777777767778888888876654445555554444 34333 3445555544333577
No 89
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=26.24 E-value=1.5e+02 Score=34.18 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=37.8
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 016160 338 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 380 (394)
Q Consensus 338 ~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid 380 (394)
-.+.+++.+|++.++++..++.+++++.+++.|+|+.++..+-
T Consensus 568 ~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~~~~~G 610 (1040)
T PRK10503 568 GIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVG 610 (1040)
T ss_pred cEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEEEec
Confidence 4467899999999999999999999999988899998877665
No 90
>PRK00106 hypothetical protein; Provisional
Probab=26.03 E-value=1.6e+02 Score=31.21 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh---cCCCccEEEEE
Q 016160 309 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE---LLPEIERAFVH 378 (394)
Q Consensus 309 ~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~---~~~~V~~v~Vh 378 (394)
++++..++.+ .+||.+.. +.+.|..+.|-| -|...+-.++..++..|.++|+ ++|+--.|+|-
T Consensus 460 l~~lE~ia~~-~~gV~~~y---aiqaGREiRviV---~p~~v~D~~~~~la~~ia~~Ie~~~~yPG~ikvtvi 525 (535)
T PRK00106 460 LRDLEEIANS-FDGVQNSF---ALQAGREIRIMV---QPEKISDDQVTILAHKVREKIENNLDYPGNIKVTVI 525 (535)
T ss_pred HHHHHHHHhc-CCcHHHHH---HHhcCCeEEEEe---cCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 5667777765 67765544 666699665543 2344677788888888888886 47886566553
No 91
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.74 E-value=2.6e+02 Score=20.24 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhcCCccccccccchhHHHHHHHHHHHH
Q 016160 174 LGILVFASVMATLGLQI---ILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLV 225 (394)
Q Consensus 174 l~~li~s~~m~~~~~~i---l~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv 225 (394)
++.++.+++++..|.+. +-+.+.+.++++++ .+..|.++..+++.++
T Consensus 5 i~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t-----~~t~~~ligG~va~iv 54 (59)
T PF11381_consen 5 IALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPT-----DKTIWYLIGGAVAVIV 54 (59)
T ss_pred ehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCC-----chhHHHHHhHHHHHHH
Confidence 34566677777776654 45567778877763 2234544444444443
No 92
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=25.63 E-value=1.3e+02 Score=23.74 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=21.7
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHH
Q 016160 337 HYFVEVDIVLPASMPLQEAHDIGESLQ 363 (394)
Q Consensus 337 ~~~vev~I~v~~~~~l~~ah~I~~~lq 363 (394)
.+.|++++.+|++|+.+++.++..+=+
T Consensus 2 lflv~m~v~~P~~~~~~~~~~~~a~E~ 28 (91)
T PF02426_consen 2 LFLVRMTVNVPPDMPPEEVDRLKAREK 28 (91)
T ss_pred eEEEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 367999999999999998888765433
No 93
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=25.39 E-value=3.2e+02 Score=23.97 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 377 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~V 377 (394)
.|..+.+|..+..++. ..|+.+-+......-...+.++++.+ ++..+++.++|+++.+|-.|..
T Consensus 12 ~pGvL~rI~~lf~rrg---~NI~Sl~v~~te~~~~sriti~V~~~------~~~i~qi~kQl~KLidV~~V~~ 75 (161)
T PRK11895 12 EPGVLSRVAGLFSRRG---YNIESLTVGPTEDPGLSRMTIVTSGD------EQVIEQITKQLNKLIDVLKVVD 75 (161)
T ss_pred CCcHHHHHHHHHHhCC---CcEEEEEeeecCCCCEEEEEEEEECC------HHHHHHHHHHHhccccEEEEEe
Confidence 3567889999887643 34555656555433333455566543 4566788899999999877654
No 94
>CHL00043 cemA envelope membrane protein
Probab=25.34 E-value=6e+02 Score=24.24 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchH-----HHHHhHHHhHHhHHHHHHHHHHH-HHhcCCCCCCCCcchhHHHHHH
Q 016160 102 ETLAIRISNVANMVLFAAKVYASVKSGSL-----AIIASTLDSLLDLLSGFILWFTA-FSMQTPNPYQYPIGKKRMQPLG 175 (394)
Q Consensus 102 ~~~al~~si~~n~~l~i~k~~a~~~s~S~-----aL~Adaldsl~D~~s~~i~l~~~-~~s~~~~~~~~P~G~~R~E~l~ 175 (394)
+..-.+..++.|++.+++-....+..+.. +-+-+.+.++.|..=.+++++.. ....- .=|-||+
T Consensus 134 ~~i~~i~n~~td~i~~~~~~~~~i~~k~~l~il~s~~~E~~Y~LSDt~KAF~IiL~TDlfvGF----HSphGWE------ 203 (261)
T CHL00043 134 DSIHTILHLSTNIISFAILSGLSILGKEELVILNSWLQEFLYNLSDTIKAFSILLLTDLCIGF----HSPHGWE------ 203 (261)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcC----CCchhHH------
Confidence 44555667777777777766666666543 34556788888877655554432 22111 1122443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHh
Q 016160 176 ILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAY 244 (394)
Q Consensus 176 ~li~s~~m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~~~s~~l~a~ 244 (394)
++.+++-+=++-.+.... .....+..-.+.-++.|.+.+.|..|. ||++.|-
T Consensus 204 --------------vli~~i~~hfGl~~n~~~--I~lfVatfPViLDtiFKYWIFRyLNRi-SPS~Vat 255 (261)
T CHL00043 204 --------------LLIGSIYKHFGFAHNDQI--ISLLVSTFPVILDTIFKYWIFRYLNRV-SPSLVVI 255 (261)
T ss_pred --------------HHHHHHHHhcCCCcccch--HHHHHHhhhHHHHHHHHHHHHhhccCC-ChHHHHH
Confidence 334444443332321111 111112222334457788888887776 7766553
No 95
>COG4035 Predicted membrane protein [Function unknown]
Probab=25.19 E-value=48 Score=26.24 Aligned_cols=45 Identities=16% Similarity=0.003 Sum_probs=27.2
Q ss_pred hHHHhHHhHHHHH-HHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 016160 135 STLDSLLDLLSGF-ILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATL 186 (394)
Q Consensus 135 daldsl~D~~s~~-i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~m~~~ 186 (394)
+...|+-|.+=.. ..+++.-.--|| ||+|.|++..-+.++++++-
T Consensus 59 s~~~~v~~~~~~ag~flig~v~gMRP-------GYGR~Etv~Gt~LA~l~wL~ 104 (108)
T COG4035 59 SWMRSVPVPLYMAGCFLIGFVLGMRP-------GYGRVETVVGTFLAVLLWLY 104 (108)
T ss_pred ecccCCchHHHHHHHHHHHHhhccCC-------CCceeehhHHHHHHHHHHHh
Confidence 3455555555444 344455444454 89999999876666655543
No 96
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=24.70 E-value=6.3e+02 Score=24.24 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-----ChhHHHhHHHHHhHHHHHHHHH
Q 016160 213 QWVVGIMLSVTLVKLLLVVYCRAFT-----NEIVKAYAQDHFFDVITNIIGL 259 (394)
Q Consensus 213 ~~~i~i~~~~~vv~~~l~~~~~~~~-----s~~l~a~a~~~~~D~~~n~~~i 259 (394)
.+...+...+.++....|...|+.+ ++.=.....-|..|..++.+|+
T Consensus 144 ~~~~~v~~~a~~~t~~~~~~~~~~~~~~~~~~~~~~vv~aH~lDa~sT~vGi 195 (273)
T PF01889_consen 144 YVLLIVLGLATIATALVWLLLRRFKVNILTDPLGLLVVFAHLLDASSTFVGI 195 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhccchhHHHHHHHHHhHHHHhhhe
Confidence 3333444444555555666555532 2211222334888998887665
No 97
>PRK04435 hypothetical protein; Provisional
Probab=24.45 E-value=4.5e+02 Score=22.47 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 016160 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 377 (394)
Q Consensus 306 ~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~V 377 (394)
+..+.+|...+.++.-.|..++. . ...+....+.+.+.+.+ ...-.++|-++|+++++|.+|-+
T Consensus 80 ~GlLs~Il~~IA~~~aNIltI~q-~-i~~~g~a~vs~tVevs~------~~~~L~~Li~~L~~i~gV~~V~i 143 (147)
T PRK04435 80 SGTLSKVLNVIAEAGGNILTINQ-S-IPLQGRANVTISIDTSS------MEGDIDELLEKLRNLDGVEKVEL 143 (147)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEE-E-cCCCCEEEEEEEEEeCC------hHHHHHHHHHHHHcCCCcEEEEE
Confidence 56788899888775545544432 1 11123355566665543 22235777888899999988754
No 98
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=24.09 E-value=1.1e+02 Score=34.29 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=35.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecC
Q 016160 343 DIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 382 (394)
Q Consensus 343 ~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~ 382 (394)
.....|..|++++.+..+.+++.+++.|+|++++-..-..
T Consensus 563 ~~~~~Pg~Sl~~~~~m~~~~e~~ik~~PeV~~V~~k~GrA 602 (1027)
T COG3696 563 MPLTIPGVSLDEALRMLQAIERAIKKFPEVERVFGKTGRA 602 (1027)
T ss_pred eeccCCCCCHHHHHHHHHHHHHHHhcCcchheeeeccccC
Confidence 4556788999999999999999999999999999877554
No 99
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=23.95 E-value=3.8e+02 Score=23.37 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 377 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~V 377 (394)
.|..+.+|..++.++. ..|+.+-+...+..-...+.++++.+ ++..+++.++|+++.+|-.|..
T Consensus 11 ~pGvL~rI~~lf~rrg---~NI~Sl~v~~t~~~~~sriti~V~~d------~~~i~qi~kQl~Kli~V~~V~~ 74 (157)
T TIGR00119 11 EPGVLSRVAGLFTRRG---FNIESLTVGPTEDPDLSRMTIVVVGD------DKVLEQITKQLNKLVDVIKVSD 74 (157)
T ss_pred CCcHHHHHHHHHHhCC---ceEEEEEEeecCCCCEEEEEEEEECC------HHHHHHHHHHHhcCccEEEEEe
Confidence 3567889999887632 44566666666533333455555542 3567889999999989877654
No 100
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.88 E-value=4.1e+02 Score=24.58 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=19.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 016160 162 YQYPIGKKRMQPLGILVFASVMATLGLQ 189 (394)
Q Consensus 162 ~~~P~G~~R~E~l~~li~s~~m~~~~~~ 189 (394)
.++..|-.++|.+..++-+++++++++.
T Consensus 52 ~~~~~~~~~lE~~WtviP~iil~~l~~~ 79 (228)
T MTH00140 52 CRTILEAQKLETIWTIVPALILVFLALP 79 (228)
T ss_pred CccccccchhhhhhhhHHHHHHHHHHHH
Confidence 4566788899988877777666555443
No 101
>PRK14633 hypothetical protein; Provisional
Probab=22.86 E-value=5e+02 Score=22.40 Aligned_cols=58 Identities=3% Similarity=0.055 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 016160 308 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 369 (394)
Q Consensus 308 ~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~ 369 (394)
+.+.+..++.. .+ ..+.++.....|. ..+.+.|.-+..+++.++..+++.|...|...
T Consensus 6 i~~lv~p~~~~--~G-~eL~dve~~~~~~-~~lrV~ID~~~Gv~lddC~~vSr~i~~~LD~~ 63 (150)
T PRK14633 6 LYEIVEPITAD--LG-YILWGIEVVGSGK-LTIRIFIDHENGVSVDDCQIVSKEISAVFDVE 63 (150)
T ss_pred HHHHHHHHHHH--CC-CEEEEEEEEeCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHhccC
Confidence 33444444533 23 3455666665555 47777777778899999999999999999743
No 102
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=22.69 E-value=2.3e+02 Score=23.92 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=35.3
Q ss_pred ccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 016160 324 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 368 (394)
Q Consensus 324 ~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~ 368 (394)
..+.++.....|.+..+.+.|.=+..+++.++..+.+.+...|+.
T Consensus 11 ~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 11 LELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp SEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTT
T ss_pred CEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHcc
Confidence 457788888889888888888778889999999999999999975
No 103
>COG2056 Predicted permease [General function prediction only]
Probab=22.56 E-value=4.9e+02 Score=26.25 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhc-CCCCCCCCcchhHHHHH
Q 016160 104 LAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQ-TPNPYQYPIGKKRMQPL 174 (394)
Q Consensus 104 ~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~-~~~~~~~P~G~~R~E~l 174 (394)
+-.|.++..-++-++.|++. .++|+-+-| +.++++++..+..+ |..|.-+.-|-+-|-.+
T Consensus 240 ~~~~~alvaiv~af~vQl~~--~~~smilga---------l~gliv~~~~gv~~~ke~d~~~~~G~kmMa~I 300 (444)
T COG2056 240 YKLALALVAIVVAFAVQLLT--FTDSMILGA---------LAGLIVFFLSGVIKWKETDDVFTEGVKMMAFI 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ccccchHHH---------HHHHHHHHHhcceehhhhHHHHHhhHHHHHHH
Confidence 56777777777778888877 567766543 44555555444443 44455565566554433
No 104
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=22.50 E-value=4e+02 Score=22.74 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecC
Q 016160 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 382 (394)
Q Consensus 306 ~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~ 382 (394)
++..+++...+.+ .|+|..++.+. |+ +-+-+.+..+. ..++.+-+.+.+...|+|.++..++--.
T Consensus 80 ~~~~~~~~~~l~~-~p~V~~~~~~t----G~-~dl~~~v~~~d------~~~l~~~~~~~l~~~~gV~~~~t~ivl~ 144 (153)
T PRK11179 80 AKDYPSALAKLES-LDEVVEAYYTT----GH-YSIFIKVMCRS------IDALQHVLINKIQTIDEIQSTETLISLQ 144 (153)
T ss_pred cccHHHHHHHHhC-CCCEEEEEEcc----cC-CCEEEEEEECC------HHHHHHHHHHHhhcCCCeeeEEEEEEEe
Confidence 3345566666655 78877655442 43 33444445553 2455566678888899999887777554
No 105
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=22.32 E-value=6.9e+02 Score=28.80 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHH-HHHHHHHHHHHhcCCC
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEA-HDIGESLQEKLELLPE 371 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~a-h~I~~~lq~~l~~~~~ 371 (394)
|.+..+.+++-+++...++.++++++.+...++ ...+.+.++++.+..++ .++.+++.....++|+
T Consensus 54 ~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g-~s~i~v~f~~~~d~~~a~~~v~~~l~~~~~~LP~ 120 (1044)
T TIGR00915 54 AQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDG-SMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQ 120 (1044)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCC-eEEEEEEEECCCChHHHHHHHHHHHHHHHhhCCC
Confidence 445567788777766677888888887764232 33555555566555443 4566666555556883
No 106
>PRK08577 hypothetical protein; Provisional
Probab=22.01 E-value=4.7e+02 Score=21.81 Aligned_cols=62 Identities=23% Similarity=0.133 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEeeec--CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 016160 307 EYLQKLTYLCWNHHKSIRHIDTVRAYTFG--SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 377 (394)
Q Consensus 307 e~~~~I~~~~~~~~~~V~~i~~vr~~~~G--~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~V 377 (394)
..+.+|...+.++.-. +.++...... ....+.+.+.++.. + .-.+++.++|+++++|.++.+
T Consensus 68 GvLa~I~~~l~~~~in---I~~i~~~~~~~~~~~~i~l~vev~~~----~--~~l~~l~~~L~~l~~V~~V~~ 131 (136)
T PRK08577 68 GVLAKITGLLAEHGVD---ILATECEELKRGELAECVIIVDLSKS----D--IDLEELEEELKKLEEVKEVEI 131 (136)
T ss_pred CHHHHHHHHHHHCCCC---EEEEEEEEecCCCEEEEEEEEEeCCc----h--hhHHHHHHHHHcCCCEEEEEE
Confidence 4677888888664333 4444444443 33456666777653 0 113678888899999877643
No 107
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=21.85 E-value=1.8e+02 Score=22.96 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=28.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 016160 341 EVDIVLPASMPLQEAHDIGESLQEKLELLPEI 372 (394)
Q Consensus 341 ev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V 372 (394)
.++|..|..+...+|.+.++.+-+++++.+++
T Consensus 3 ~I~I~r~H~Lg~~eAr~~~e~~a~~l~~~~~~ 34 (91)
T TIGR02610 3 SISVERDHSLGPAAARAKAEDLARKLTDRYGL 34 (91)
T ss_pred ceEEEecCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999866665
No 108
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=21.45 E-value=7.5e+02 Score=23.98 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=36.1
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHhhh-----hh-cccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016160 244 YAQDHFFDVITNIIGLVAVLLANYI-----DD-WMDPVGAIILALYTIRTWSMTVLENVN 297 (394)
Q Consensus 244 ~a~~~~~D~~~n~~~i~~~~~~~~~-----~~-~~Dpi~aiiIa~~ii~~~~~~~~e~~~ 297 (394)
.......|.+.+.=.++.|+++..+ ++ +-=-.|++.++++++....+...|+.+
T Consensus 109 ~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~laGaLaLall~LP~iirtteeaL~ 168 (292)
T COG0581 109 KVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALAGALALALLMLPVVIRTTEEALR 168 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777765555555555433 32 334457888999999999988888766
No 109
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.43 E-value=2.9e+02 Score=19.18 Aligned_cols=61 Identities=23% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEeee-cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 016160 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 378 (394)
Q Consensus 306 ~e~~~~I~~~~~~~~~~V~~i~~vr~~~~-G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vh 378 (394)
+..+.++...+.++.-.+. ++..... +.... +.+.++.. +..+.+.++|++.++|.++.+|
T Consensus 11 ~g~l~~i~~~l~~~~~~i~---~~~~~~~~~~~~~--~~i~~~~~-------~~~~~~~~~L~~~~~v~~v~~~ 72 (72)
T cd04874 11 PGVLRDLTGVIAEHGGNIT---YTQQFIEREGKAR--IYMELEGV-------GDIEELVEELRSLPIVREVEIH 72 (72)
T ss_pred CChHHHHHHHHHhCCCCEE---EEEEeccCCCeEE--EEEEEecc-------ccHHHHHHHHhCCCCeEEEEeC
Confidence 3467888888877544444 3333332 22222 33555542 2334777889999999888775
No 110
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=21.28 E-value=7.5e+02 Score=23.87 Aligned_cols=22 Identities=9% Similarity=0.001 Sum_probs=14.5
Q ss_pred ceeEEEeeecCeEEEEEEEEeC
Q 016160 326 IDTVRAYTFGSHYFVEVDIVLP 347 (394)
Q Consensus 326 i~~vr~~~~G~~~~vev~I~v~ 347 (394)
+-++..|..++.-.+.+.++=.
T Consensus 209 ~a~~tlyS~~~~~I~sa~i~gt 230 (285)
T PF06157_consen 209 VANFTLYSSIQVTITSASIEGT 230 (285)
T ss_pred eEEEEEEecCceEEEEEEEEcc
Confidence 4566677777777777777543
No 111
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=21.11 E-value=4e+02 Score=20.65 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 016160 303 SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 378 (394)
Q Consensus 303 s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vh 378 (394)
...|+.++++.+... | .|.. +-.+.....-..-.+.+++.++.+-++ +.|...|+++.+|..+.|.
T Consensus 11 r~~pe~leRVLrvtr-h-RGF~-vcamnmt~~~da~~~nie~tV~s~R~~-------~lL~~QLeKl~Dv~~V~i~ 76 (86)
T COG3978 11 RFNPETLERVLRVTR-H-RGFR-VCAMNMTAAVDAGNANIELTVDSDRSV-------DLLTSQLEKLYDVAHVEIT 76 (86)
T ss_pred cCChHHHHHHHHHhh-h-cCeE-EEEeecccccccccceEEEEEcCCCCh-------HHHHHHHHHHccceeEEEe
Confidence 456889999998884 3 3321 222222222112345566677777665 5677888888898765543
No 112
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=20.88 E-value=4.5e+02 Score=27.06 Aligned_cols=50 Identities=22% Similarity=0.098 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHH
Q 016160 102 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWF 151 (394)
Q Consensus 102 ~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~ 151 (394)
....=|++.++.++..++++..|+++|-..=+|++.-.++--..+.+-..
T Consensus 153 ~~ifdWi~~~~e~v~Ga~kv~~G~ltg~p~~~a~Ga~~~aaG~aG~vkaa 202 (473)
T PRK15362 153 GAIFDWIVGIFETVIGALKVVEGFLSGNPAEMAGGAAYLAAGCAGMVKAA 202 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCchHHHHhHHHHHHhhHHHHHHHH
Confidence 34556888889999999999999888877666666555544444444333
No 113
>PF03203 MerC: MerC mercury resistance protein
Probab=20.80 E-value=4.7e+02 Score=21.29 Aligned_cols=79 Identities=19% Similarity=0.127 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhch--HHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHH
Q 016160 103 TLAIRISNVANMVLFAAKVYASVKSGS--LAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFA 180 (394)
Q Consensus 103 ~~al~~si~~n~~l~i~k~~a~~~s~S--~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s 180 (394)
+..+..|..+-+-....=+..+..+-. .-+..+.+|..++.+...+..++....-|+. +|..++.....|
T Consensus 3 ~~gi~~S~LC~iHCl~~P~l~~~l~~~g~~~~~~~~~h~~ll~~~~~i~~~al~~g~r~h--------~~~~~~~l~~~G 74 (116)
T PF03203_consen 3 RLGIGASLLCAIHCLALPALLALLPALGGFFLENEWFHWLLLYLFLPIALLALFRGYRRH--------RRWLPLALGVIG 74 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhhc--------cchHHHHHHHHH
Confidence 345566666655555555444433222 2256788999999999888888887654322 134566656666
Q ss_pred HHHHHHHHH
Q 016160 181 SVMATLGLQ 189 (394)
Q Consensus 181 ~~m~~~~~~ 189 (394)
..++..+..
T Consensus 75 ~~ll~~~~~ 83 (116)
T PF03203_consen 75 LALLLLALF 83 (116)
T ss_pred HHHHHHHHH
Confidence 665555553
No 114
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.75 E-value=2.6e+02 Score=32.13 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=36.8
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC--CCccEEEEEEec
Q 016160 338 YFVEVDIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDY 381 (394)
Q Consensus 338 ~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~--~~V~~v~Vhid~ 381 (394)
-.+.+++.+|+..++++.+++.+++++.|++. |+|+.++..+.+
T Consensus 570 ~~~~v~v~~p~gtsl~~t~~~~~~ve~~l~~~~~~~v~~~~~~~G~ 615 (1044)
T TIGR00915 570 GVFMTIVQLPAGATAERTQKVLAQVEKYLLAKEKANVESVFTVNGF 615 (1044)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCeeEEEEEecc
Confidence 45677888999999999999999999999754 688888776654
No 115
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=20.54 E-value=4.1e+02 Score=30.61 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHH-HHHHHHHHHHHHhcCC
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 370 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~-ah~I~~~lq~~l~~~~ 370 (394)
|.++.+.|++-+++...++.++++++.+.....-.+.++.....+ ..+ ..++.+++.+.-.++|
T Consensus 65 ~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~d--~~~a~~ev~~~i~~~~~~LP 129 (1040)
T PRK10503 65 PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLP--LDVAEQEVQAAINAATNLLP 129 (1040)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCCC--hHHHHHHHHHHHHHHHHhCC
Confidence 455577788888887788999999998877655555555554443 333 2345555544333577
No 116
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=20.41 E-value=1.4e+02 Score=23.90 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.2
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 016160 167 GKKRMQPLGILVFASVMATL 186 (394)
Q Consensus 167 G~~R~E~l~~li~s~~m~~~ 186 (394)
||+|.|....++.+++..++
T Consensus 78 GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 78 GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred CCCeehhhhhHHHHHHHHHH
Confidence 99999999888888776553
No 117
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=20.28 E-value=1.3e+03 Score=26.41 Aligned_cols=44 Identities=9% Similarity=-0.050 Sum_probs=37.1
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEE
Q 016160 336 SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 379 (394)
Q Consensus 336 ~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhi 379 (394)
+.-.+.+++.+|++.++++..+..+++++.+++.|+|++++..+
T Consensus 556 d~~~~~v~v~~~~gtsl~~t~~~~~~~~~~l~~~~~V~~v~~~~ 599 (1025)
T PRK10614 556 DTGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFT 599 (1025)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 33456788899999999999999999999999889998877654
No 118
>PRK00341 hypothetical protein; Provisional
Probab=20.23 E-value=4.3e+02 Score=20.72 Aligned_cols=64 Identities=11% Similarity=0.191 Sum_probs=38.1
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeeecCe--EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 016160 300 VGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH--YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 373 (394)
Q Consensus 300 lg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~--~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~ 373 (394)
+|. +.+++.+.|..++.+|. .. ....+..+....+ .-+.+.|.+... ++ .+.|=+.|.+.|.|.
T Consensus 23 iG~-~~~~~~~~V~~iv~~~~-~~-~~~~~~~k~Ss~GkY~S~tv~i~~~s~---~q----~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 23 IGD-TGVGFKDLVIEILQKHA-DV-DLSTLAERQSSNGKYTTVQLHIVATDE---DQ----LQDINSALRATGRVH 88 (91)
T ss_pred EEc-CchhHHHHHHHHHHHhC-CC-cccceeeccCCCCEEEEEEEEEEECCH---HH----HHHHHHHHhhCCCEE
Confidence 453 56788999999998865 33 2345555555444 455555555532 33 345555666677773
No 119
>PRK09579 multidrug efflux protein; Reviewed
Probab=20.11 E-value=2.1e+02 Score=32.77 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=35.5
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 016160 339 FVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 380 (394)
Q Consensus 339 ~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid 380 (394)
.+.+++.+|+..++++.++..+++++.+++.|++......+.
T Consensus 557 ~~~v~~~~p~gt~l~~t~~~~~~ie~~l~~~p~v~~~~~~~G 598 (1017)
T PRK09579 557 IIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYYSSFQING 598 (1017)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEEec
Confidence 446789999999999999999999999998899887664443
Done!