Query 016160
Match_columns 394
No_of_seqs 267 out of 1753
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 4.8E-54 1.7E-58 416.2 14.9 279 99-384 8-291 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 6.5E-51 2.2E-55 390.4 19.3 275 103-385 3-283 (283)
3 3byp_A CZRB protein; membrane 99.5 1E-13 3.5E-18 110.0 11.5 83 298-382 1-86 (94)
4 2zzt_A Putative uncharacterize 99.4 4.8E-13 1.6E-17 108.9 10.3 84 300-384 1-87 (107)
5 3h90_A Ferrous-iron efflux pum 97.5 4.7E-05 1.6E-09 71.9 2.9 93 103-203 111-203 (283)
6 3j1z_P YIIP, cation efflux fam 97.4 6.3E-05 2.1E-09 72.0 3.3 94 103-204 120-213 (306)
7 3cq1_A Putative uncharacterize 70.1 18 0.0006 27.9 7.6 44 339-384 42-86 (103)
8 1zpv_A ACT domain protein; str 54.0 23 0.00077 26.0 5.4 75 305-389 15-89 (91)
9 1uwd_A Hypothetical protein TM 50.7 34 0.0012 26.2 6.0 46 339-386 43-89 (103)
10 2cvi_A 75AA long hypothetical 49.6 41 0.0014 24.3 6.1 65 309-386 15-80 (83)
11 1ib8_A Conserved protein SP14. 49.2 82 0.0028 26.4 8.7 78 310-387 12-92 (164)
12 3lno_A Putative uncharacterize 46.9 32 0.0011 26.7 5.3 46 340-387 46-93 (108)
13 2jp3_A FXYD domain-containing 46.2 31 0.001 24.6 4.4 32 161-193 7-38 (67)
14 2dbb_A Putative HTH-type trans 43.0 1.1E+02 0.0037 24.6 8.4 66 303-380 76-142 (151)
15 2jsx_A Protein NAPD; TAT, proo 39.4 84 0.0029 23.9 6.5 65 305-382 15-79 (95)
16 2zxe_G FXYD10, phospholemman-l 37.8 35 0.0012 24.7 3.7 30 162-192 10-39 (74)
17 3zzp_A TS9, ribosomal protein 31.5 1.2E+02 0.004 22.1 5.9 66 299-368 9-74 (77)
18 2kjw_A TS9, 30S ribosomal prot 31.3 1.3E+02 0.0044 22.9 6.4 68 298-369 8-75 (96)
19 2i52_A Hypothetical protein; s 30.3 42 0.0014 26.8 3.4 30 353-383 41-70 (121)
20 2f1f_A Acetolactate synthase i 26.3 1.7E+02 0.0059 24.4 7.0 64 305-377 13-76 (164)
21 2zbc_A 83AA long hypothetical 26.3 1.4E+02 0.0047 21.0 5.7 61 309-382 15-76 (83)
22 1mli_A Muconolactone isomerase 25.9 72 0.0025 24.4 4.0 23 338-360 3-25 (96)
23 2ko1_A CTR148A, GTP pyrophosph 25.7 1.8E+02 0.006 20.5 9.6 63 306-378 16-78 (88)
24 2ogf_A Hypothetical protein MJ 25.7 57 0.0019 26.0 3.4 28 353-380 46-73 (122)
25 1u8s_A Glycine cleavage system 25.5 2.9E+02 0.01 23.0 9.1 78 305-390 103-188 (192)
26 4dx5_A Acriflavine resistance 25.4 6.7E+02 0.023 27.1 27.7 42 338-379 570-613 (1057)
27 2jo1_A Phospholemman; FXYD1, N 24.3 73 0.0025 22.9 3.4 30 163-193 8-37 (72)
28 3n2f_G Na+/K+ ATPase gamma sub 23.4 64 0.0022 19.4 2.5 27 164-191 3-29 (31)
29 2cg4_A Regulatory protein ASNC 22.9 1.8E+02 0.0061 23.3 6.4 61 308-381 81-142 (152)
30 3i4p_A Transcriptional regulat 22.0 2.8E+02 0.0094 22.5 7.4 62 307-382 77-139 (162)
31 2pc6_A Probable acetolactate s 21.6 1.7E+02 0.006 24.5 6.0 64 305-377 14-77 (165)
32 2pn6_A ST1022, 150AA long hypo 20.6 2.4E+02 0.008 22.4 6.6 64 306-382 75-139 (150)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=4.8e-54 Score=416.24 Aligned_cols=279 Identities=20% Similarity=0.232 Sum_probs=254.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHH
Q 016160 99 ARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILV 178 (394)
Q Consensus 99 ~~~~~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li 178 (394)
+...|++.++++++|++++++|+++|+.|||+||+||++||++|++++++++++.+.++||++.+|||||+|+|++++++
T Consensus 8 ~~~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~ 87 (306)
T 3j1z_P 8 DFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALA 87 (306)
T ss_dssp TCCSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHH----hcChhHHHhHHHHHhHHHH
Q 016160 179 FASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVIT 254 (394)
Q Consensus 179 ~s~~m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~----~~s~~l~a~a~~~~~D~~~ 254 (394)
.|++++++++++++||+++|++|.+. ....+++++++++++++.++++++++ .+|+.+++++.|+++|+++
T Consensus 88 ~~~~l~~~~~~i~~eai~~l~~p~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~ 162 (306)
T 3j1z_P 88 QSAFIMGSAFLLLFYGGERLLNPSPV-----ENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFL 162 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCG-----GGTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhhheecCCCc-----cccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhh
Confidence 99999999999999999999988762 22355677888888999999988865 3588999999999999999
Q ss_pred HHHHHHHHHHHhhh-hhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEee
Q 016160 255 NIIGLVAVLLANYI-DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYT 333 (394)
Q Consensus 255 n~~~i~~~~~~~~~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~ 333 (394)
|++++++ +++.++ +||+||+++++|++++++.|+++++++...|+|+++|++..++|++.+.+ .|+|.++|++|+|+
T Consensus 163 s~~vli~-~~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~-~~~V~~vh~l~~~~ 240 (306)
T 3j1z_P 163 NAAVLLA-LVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKE-DPRVLGLHDLRTRQ 240 (306)
T ss_dssp CTTCCCT-TSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-STTBCCCCCBCCEE
T ss_pred hhHHHHH-HHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhc-CCCcceeeeEEEEE
Confidence 9755554 444444 47999999999999999999999999999999999999999999999976 89999999999999
Q ss_pred ecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCC
Q 016160 334 FGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 384 (394)
Q Consensus 334 ~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~ 384 (394)
.|+++++++||++|+++|++|+|+|++++|++|++.+++.+++||+||...
T Consensus 241 ~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~~ 291 (306)
T 3j1z_P 241 AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQV 291 (306)
T ss_dssp ETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETTS
T ss_pred ECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCC
Confidence 999999999999999999999999999999999876678899999999854
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=6.5e-51 Score=390.42 Aligned_cols=275 Identities=19% Similarity=0.241 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 016160 103 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASV 182 (394)
Q Consensus 103 ~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~ 182 (394)
++++++++++|++++++|+++|+.+||+||+||++||++|+++.++.+++.+.++||++.+|||||+|+|++++++.|++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHH----hcChhHHHhHHHHHhHHHHHHHH
Q 016160 183 MATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNIIG 258 (394)
Q Consensus 183 m~~~~~~il~esi~~L~~~~~~~~~~~~~~~~~i~i~~~~~vv~~~l~~~~~~----~~s~~l~a~a~~~~~D~~~n~~~ 258 (394)
++++++++++||++++++|++. + ...++++++++++++|.++++|+++ .+|+.+++++.|+++|+++|+++
T Consensus 83 l~~~~~~i~~eai~~l~~~~~~-~----~~~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~v 157 (283)
T 3h90_A 83 ISGSALFLFLTGIQHLISPTPM-T----DPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAI 157 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCC-C----CCCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-C----cchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988762 2 2345678888899999999999865 47999999999999999998644
Q ss_pred HHHHHHHhhhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeeecCe
Q 016160 259 LVAVLLANYID-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH 337 (394)
Q Consensus 259 i~~~~~~~~~~-~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~ 337 (394)
+ .+.++.+++ +|+||++++++++++++.++++++++...|+|+++|++..++|++.+.+ .|+|.++|++|+|+.|++
T Consensus 158 l-i~~~~~~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~-~~~V~~v~~l~~~~~G~~ 235 (283)
T 3h90_A 158 L-LALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRTRQSGPT 235 (283)
T ss_dssp C-SSSCSCSTTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-SSSCSEEEEEEEEEETTE
T ss_pred H-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-CCCcccceeeEEEEECCc
Confidence 4 444445555 5999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccEEEEEEecCCCC
Q 016160 338 YFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAFVHLDYEYTH 385 (394)
Q Consensus 338 ~~vev~I~v~~~~~l~~ah~I~~~lq~~l~-~~~~V~~v~Vhid~~~~~ 385 (394)
+++++||++|++++++|+|++.+++|++|+ ++|. .+++||+||+.++
T Consensus 236 ~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~~ 283 (283)
T 3h90_A 236 RFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSVV 283 (283)
T ss_dssp EEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCCC
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCCC
Confidence 999999999999999999999999999997 5665 6899999998653
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.51 E-value=1e-13 Score=110.04 Aligned_cols=83 Identities=20% Similarity=0.440 Sum_probs=73.3
Q ss_pred hhhCCCCCHHHHHHHHHHHHhcC--CCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccE
Q 016160 298 SLVGRSAAPEYLQKLTYLCWNHH--KSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIER 374 (394)
Q Consensus 298 ~Llg~s~~~e~~~~I~~~~~~~~--~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~-~~~~V~~ 374 (394)
.|+|.+++++..++|++.+.+ . ++|.++|++|+|+.|+.+++++||++++++++.++|++.++++++|+ ++|.+ +
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~-~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~ 78 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQE-RIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-Q 78 (94)
T ss_dssp -----CCCHHHHHHHHHHHHH-HHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-E
T ss_pred CCcCCCCCHHHHHHHHHHHHh-cCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-E
Confidence 378988999999999999987 7 99999999999999999999999999999999999999999999996 57766 9
Q ss_pred EEEEEecC
Q 016160 375 AFVHLDYE 382 (394)
Q Consensus 375 v~Vhid~~ 382 (394)
++||+||+
T Consensus 79 vtIh~ep~ 86 (94)
T 3byp_A 79 ATIHVEPE 86 (94)
T ss_dssp EEEEEEEC
T ss_pred EEEEeCCC
Confidence 99999985
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.44 E-value=4.8e-13 Score=108.91 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=74.5
Q ss_pred hCCCCCHH--HHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh-cCCCccEEE
Q 016160 300 VGRSAAPE--YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAF 376 (394)
Q Consensus 300 lg~s~~~e--~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~-~~~~V~~v~ 376 (394)
||.+++++ ..++|+..+.+ .|+|.+++++|+|+.|+.+++++||++++++++.++|+|.+++++.|+ ++|.+.+++
T Consensus 1 md~~~~~~~~~~~~I~~~l~~-~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLER-FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTT-CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCCccHHHHHHHHHHHHc-CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 46678888 99999999976 899999999999999999999999999999999999999999999996 577799999
Q ss_pred EEEecCCC
Q 016160 377 VHLDYEYT 384 (394)
Q Consensus 377 Vhid~~~~ 384 (394)
||+||...
T Consensus 80 IhvEp~~~ 87 (107)
T 2zzt_A 80 IHVEPLGN 87 (107)
T ss_dssp EEEEETTC
T ss_pred EEEecCCC
Confidence 99999754
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=97.45 E-value=4.7e-05 Score=71.91 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 016160 103 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASV 182 (394)
Q Consensus 103 ~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~ 182 (394)
-.+..+++++|.+++......+-..+|.++.|++.|.+.|+++++.++++.... .+|+.-++++++++.+++
T Consensus 111 l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~ 182 (283)
T 3h90_A 111 VIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIY 182 (283)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHH
Confidence 456778899999999988888888999999999999999999998877765432 237777999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCc
Q 016160 183 MATLGLQIILESLRTLVSNED 203 (394)
Q Consensus 183 m~~~~~~il~esi~~L~~~~~ 203 (394)
++..++.+++++++.|++..+
T Consensus 183 i~~~~~~l~~~s~~~Ll~~~~ 203 (283)
T 3h90_A 183 ILYSALRMGYEAVQSLLDRAL 203 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999998766
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=97.41 E-value=6.3e-05 Score=71.95 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHhHHhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 016160 103 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASV 182 (394)
Q Consensus 103 ~~al~~si~~n~~l~i~k~~a~~~s~S~aL~Adaldsl~D~~s~~i~l~~~~~s~~~~~~~~P~G~~R~E~l~~li~s~~ 182 (394)
-.+..++++.|++++.+....+-..+|.++.|+++|...|+++++.++++..... +|+.-++|+++++.+++
T Consensus 120 ~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~ 191 (306)
T 3j1z_P 120 VVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACY 191 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHH
T ss_pred hhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHH
Confidence 3456677888999988888888889999999999999999999988887765432 47777999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcc
Q 016160 183 MATLGLQIILESLRTLVSNEDQ 204 (394)
Q Consensus 183 m~~~~~~il~esi~~L~~~~~~ 204 (394)
++..++.+++++++.|++..++
T Consensus 192 I~~~~~~l~~~s~~~Ll~~~~~ 213 (306)
T 3j1z_P 192 IGQQAFDLGYRSIQALLDRELD 213 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHhCcccc
Confidence 9999999999999999987763
No 7
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=70.07 E-value=18 Score=27.89 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=32.9
Q ss_pred EEEEEEEeC-CCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCC
Q 016160 339 FVEVDIVLP-ASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 384 (394)
Q Consensus 339 ~vev~I~v~-~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~ 384 (394)
.|.+.+.++ +..+. ...+.+.++++|+++|+|..+.|.+..+..
T Consensus 42 ~V~v~l~lt~~~cp~--~~~l~~~i~~al~~l~gv~~V~V~l~~~p~ 86 (103)
T 3cq1_A 42 RAYVRMTLTTPGCPL--HDSLGEAVRQALSRLPGVEEVEVEVTFEPP 86 (103)
T ss_dssp EEEEEECCSSSSCCS--SCHHHHHHHHHHHTSTTCCEEEEEECCSSC
T ss_pred EEEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCceeEEEEEecCCC
Confidence 455555553 34454 567899999999999999999998877654
No 8
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=54.00 E-value=23 Score=26.00 Aligned_cols=75 Identities=4% Similarity=-0.024 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCC
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 384 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~ 384 (394)
-|..+.+|...+.++. ..|.++.....+....+.+.+.++....+ .++.+.|++.-+++ .+.+++.++..
T Consensus 15 rpGila~vt~~la~~~---~NI~~i~~~~~~~~~~~~i~v~~~~~~~l---~~l~~~L~~~~~~~----~~~~~~~~~~i 84 (91)
T 1zpv_A 15 KSGIVAGVSGKIAELG---LNIDDISQTVLDEYFTMMAVVSSDEKQDF---TYLRNEFEAFGQTL----NVKINIQSAAI 84 (91)
T ss_dssp CTTHHHHHHHHHHHTT---CEEEEEEEEEETTEEEEEEEEEESSCCCH---HHHHHHHHHHHHHH----TEEEEEEEGGG
T ss_pred CCCHHHHHHHHHHHcC---CCEEEEEeEEEcCEEEEEEEEEeCCCCCH---HHHHHHHHHHHHHc----CCEEEEeeHHH
Confidence 3567889999997743 34455555555556778888888764443 45555555433332 25566666654
Q ss_pred CCCcc
Q 016160 385 HRPEH 389 (394)
Q Consensus 385 ~~~eh 389 (394)
.+..|
T Consensus 85 f~~~~ 89 (91)
T 1zpv_A 85 FEAMY 89 (91)
T ss_dssp TC---
T ss_pred HHHhh
Confidence 44433
No 9
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=50.71 E-value=34 Score=26.15 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=33.7
Q ss_pred EEEEEEEeC-CCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCCCC
Q 016160 339 FVEVDIVLP-ASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHR 386 (394)
Q Consensus 339 ~vev~I~v~-~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~~~ 386 (394)
.|.+.+.++ +..+. ...+.+.++++|+++|+|..+.|.+..+..=.
T Consensus 43 ~V~v~l~lt~~~cp~--~~~l~~~i~~al~~l~gv~~v~V~l~~~p~W~ 89 (103)
T 1uwd_A 43 NVKVLMTMTTPMCPL--AGMILSDAEEAIKKIEGVNNVEVELTFDPPWT 89 (103)
T ss_dssp EEEEEECCSSSCCSS--HHHHHHHHHHHHHTSSSCCEEEEEECCSSCCC
T ss_pred EEEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCcceEEEEEecCCCCC
Confidence 355555553 34554 67899999999999999999999887765433
No 10
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=49.60 E-value=41 Score=24.32 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCcccceeEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecCCCCC
Q 016160 309 LQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHR 386 (394)
Q Consensus 309 ~~~I~~~~~~~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~~~~ 386 (394)
.+++.+.+.+ .|+|..++.+ .|+. +.+.+.. + +. .++.+-+.++|.++|+|.++..++-.+..|+
T Consensus 15 ~~~~~~~l~~-~peV~e~~~v----tG~~D~ll~v~~--~---d~---~~l~~~i~~~l~~~~gV~~~~T~ivl~~~~~ 80 (83)
T 2cvi_A 15 EREVMEKLLA-MPEVKEAYVV----YGEYDLIVKVET--D---TL---KDLDQFITEKIRKMPEIQMTSTMIAILEHHH 80 (83)
T ss_dssp HHHHHHHHHT-STTEEEEEEC----BSSCSEEEEEEE--S---SH---HHHHHHHHTTGGGCTTEEEEEEEEEEEETTT
T ss_pred HHHHHHHHhC-CCCeeEEEEE----cccCCEEEEEEE--C---CH---HHHHHHHHHHhccCCCEeEEEEEEEEehhcc
Confidence 3566666655 7887765422 2553 6665544 3 22 3444555668889999999888887765443
No 11
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=49.22 E-value=82 Score=26.44 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHh--cCCCcc-EEEEEEecCCCCC
Q 016160 310 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE--LLPEIE-RAFVHLDYEYTHR 386 (394)
Q Consensus 310 ~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~--~~~~V~-~v~Vhid~~~~~~ 386 (394)
++|..++......=..+.++....-|.+..+.+.|.=+..+++.++.++++.+...|. ....+. .-+..|--..-.+
T Consensus 12 ~~v~~li~p~~~~g~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD~~~~d~i~~~Y~LEVSSPGldR 91 (164)
T 1ib8_A 12 ELVREVVEPVIEAPFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGLER 91 (164)
T ss_dssp HHHHHHHHHHHCSSSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEECCSSSS
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccccCCCCCeEEEEeCCCCCC
Confidence 3444444332222245667777778888888888888888999999999999999998 433332 2234444444444
Q ss_pred C
Q 016160 387 P 387 (394)
Q Consensus 387 ~ 387 (394)
|
T Consensus 92 p 92 (164)
T 1ib8_A 92 P 92 (164)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=46.93 E-value=32 Score=26.70 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=33.2
Q ss_pred EEEEEEeC-CCCCHHHHHHHHHHHHHHH-hcCCCccEEEEEEecCCCCCC
Q 016160 340 VEVDIVLP-ASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLDYEYTHRP 387 (394)
Q Consensus 340 vev~I~v~-~~~~l~~ah~I~~~lq~~l-~~~~~V~~v~Vhid~~~~~~~ 387 (394)
|.+.+.++ +..+. ...|.+.++++| +++|+|..|.|.+..+..=.|
T Consensus 46 V~V~ltlt~p~cp~--~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p~W~~ 93 (108)
T 3lno_A 46 AVITMTMTSIGCPM--AGQIVSDVKKVLSTNVPEVNEIEVNVVWNPPWSK 93 (108)
T ss_dssp EEEEECCSCTTCTT--HHHHHHHHHHHHHHHCTTCCCEEEEECCSSCCCG
T ss_pred EEEEEEECCCCCcH--HHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCh
Confidence 44444442 33554 468999999999 899999999999987754433
No 13
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=46.23 E-value=31 Score=24.58 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=21.4
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016160 161 PYQYPIGKKRMQPLGILVFASVMATLGLQIILE 193 (394)
Q Consensus 161 ~~~~P~G~~R~E~l~~li~s~~m~~~~~~il~e 193 (394)
+..|-|-|+.+. ++.++++.+++++|+.++..
T Consensus 7 ~dpF~YDY~tLR-igGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 7 GSPFYYDWESLQ-LGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp TSGGGGGGHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccchHHhe-ecchhhHHHHHHHHHHHHHc
Confidence 345556666665 46677888888888877543
No 14
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=43.01 E-value=1.1e+02 Score=24.60 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCcccceeEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 016160 303 SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 380 (394)
Q Consensus 303 s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid 380 (394)
..++...+++...+.+ .|+|..++.+ .|+. +.+.+. .++ + ..++.+-+.++|.+.|+|.++..++-
T Consensus 76 ~~~~~~~~~~~~~l~~-~peV~~~~~v----tG~~d~~~~v~--~~~--d---~~~l~~~~~~~l~~~~gV~~~~t~iv 142 (151)
T 2dbb_A 76 SKVPSDADKVISEISD-IEYVKSVEKG----VGRYNIIVRLL--LPK--D---IKDAENLISEFLQRIKNAENVEVILI 142 (151)
T ss_dssp ESSHHHHHHHHHHHTT-CTTEEEEEEE----ESSCSEEEEEE--EES--S---HHHHHHHHHHHHHTCCSEEEEEEEEE
T ss_pred EeCCCCHHHHHHHHHc-CCCeEEEeEe----cCCCCEEEEEE--EcC--C---HHHHHHHHHHHhhcCCCeeEEEEEEE
Confidence 3466666777777765 7888776644 4653 555444 422 2 23444555578888999987776654
No 15
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=39.45 E-value=84 Score=23.85 Aligned_cols=65 Identities=5% Similarity=-0.022 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecC
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 382 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~ 382 (394)
.|+..+.+...+.+ .|++ .+ ... .|...-+-+.++-+. ..++.+.+ ++|+++|+|.++.....+.
T Consensus 15 ~p~~~~~V~~~L~~-ipgv-Ei---~~~-~~~~GkiVV~iEa~~------~~~l~~~i-~~I~~i~GVlst~lvy~~~ 79 (95)
T 2jsx_A 15 KSERISDISTQLNA-FPGC-EV---AVS-DAPSGQLIVVVEAED------SETLIQTI-ESVRNVEGVLAVSLVYHQQ 79 (95)
T ss_dssp CTTSHHHHHHHHTT-STTE-EE---EEE-ETTTTEEEEEEEESS------HHHHHHHH-HHHTTSTTEEEEEESSCCC
T ss_pred CCCCHHHHHHHHHC-CCCe-EE---EEe-cCCCCCEEEEEEeCC------HHHHHHHH-HHHhcCCCccEEeEEEEEe
Confidence 45556777777765 5665 22 221 122222233333332 45677777 8999999998887765543
No 16
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=37.78 E-value=35 Score=24.75 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=20.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 016160 162 YQYPIGKKRMQPLGILVFASVMATLGLQIIL 192 (394)
Q Consensus 162 ~~~P~G~~R~E~l~~li~s~~m~~~~~~il~ 192 (394)
..|-|-|+++. +++++++.+++++|+.++.
T Consensus 10 dpF~YDY~tLR-igGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 10 ERFTYDYYRLR-VVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGCCCHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHhe-eccchhHHHHHHHHHHHHH
Confidence 34556666655 5667788888888887753
No 17
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=31.48 E-value=1.2e+02 Score=22.08 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=48.0
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 016160 299 LVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 368 (394)
Q Consensus 299 Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~ 368 (394)
|+.-.++++..+++.+.+. ..+.|...-.+|. ...-.-|+-+.++|+++-++.....++++..|++
T Consensus 9 l~~~~a~~~~i~Eler~~r-ine~VlR~l~vr~---d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~ 74 (77)
T 3zzp_A 9 WYQVEMPEDRVNDLARELR-IRDNVRRVMVVAS---TTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALEN 74 (77)
T ss_dssp EEEEECCHHHHHHHHHHHH-TSTTEEEEEEEEC---SSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHhHHHHHHHHhC-CCHHHHHHHHHhc---cCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 4444578999999999885 4677765444443 3323346677889999998899999999988864
No 18
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=31.26 E-value=1.3e+02 Score=22.88 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=53.3
Q ss_pred hhhCCCCCHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 016160 298 SLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 369 (394)
Q Consensus 298 ~Llg~s~~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~ 369 (394)
.++.-.+|++..+.+.+.+. ..+.|...-.+|+-.. + .-|+-+.++|+++-++...+.++++..|++.
T Consensus 8 ~~~~~~a~~~~v~eler~~r-~~e~vlR~l~v~~e~M-r--~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~ 75 (96)
T 2kjw_A 8 LWYQVEMPEDRVNDLARELR-IRDNVRRVMVVASTTP-G--RYEVNIVLNPNLDQSQLALEKEIIQRALENY 75 (96)
T ss_dssp EEECCCCCHHHHHHHHHHHH-HCTTCSEEEEEECSSS-S--CEEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecChhHHHHHHHHhc-cchhhhhhhheehhhh-h--hhheeeeeCCCCCHHHHHHHHHHHHHHHHhC
Confidence 34566789999999999885 4778887777777642 2 3466668999999999999999999999753
No 19
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=30.32 E-value=42 Score=26.81 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccEEEEEEecCC
Q 016160 353 QEAHDIGESLQEKLELLPEIERAFVHLDYEY 383 (394)
Q Consensus 353 ~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~~ 383 (394)
+.++-+...+++.++..|.|+++.|+|+ +-
T Consensus 41 eta~sLE~AIE~si~~QP~v~~v~V~I~-d~ 70 (121)
T 2i52_A 41 ENASMAEEFIERSTMIQPFVENVRISIN-NV 70 (121)
T ss_dssp TTHHHHHHHHHHHHTTSTTEEEEEEEEC-CC
T ss_pred ccHHHHHHHHHHHHhcCCceEEEEEEEe-hh
Confidence 4577788889999998999999999998 54
No 20
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=26.33 E-value=1.7e+02 Score=24.41 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 377 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~V 377 (394)
.|..+++|..++.++ + ..|.++.+......-...+.++++.+ .+..+++.++|+++++|.+|.-
T Consensus 13 rpGvLarIt~lfs~r--g-~NI~Sl~v~~t~d~~~sriti~V~~d------~~~leqI~kqL~Kl~dV~~V~r 76 (164)
T 2f1f_A 13 ESGALSRVIGLFSQR--G-YNIESLTVAPTDDPTLSRMTIQTVGD------EKVLEQIEKQLHKLVDVLRVSE 76 (164)
T ss_dssp CTTHHHHHHHHHHTT--T-CCCSEEEEEECSCSSEEEEEEEEESC------HHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCcHHHHHHHHHHHC--C-CCeeeceeeecCCCCEEEEEEEEecc------HHHHHHHHHHHcCCCCEEEEEE
Confidence 356788999998653 2 45666666554432234455555543 4567888889999999877643
No 21
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=26.31 E-value=1.4e+02 Score=21.02 Aligned_cols=61 Identities=10% Similarity=0.221 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCcccceeEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecC
Q 016160 309 LQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 382 (394)
Q Consensus 309 ~~~I~~~~~~~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~ 382 (394)
.+++.+.+.+ .|+|..++.+ .|+. +.+. +..+. . .++.+-+.++|.++|+|.++..++--.
T Consensus 15 ~~~~~~~l~~-~peV~~~~~v----tG~~d~l~~--v~~~d---~---~~l~~~~~~~l~~~~gV~~~~t~ivl~ 76 (83)
T 2zbc_A 15 EDEVFERLKS-MSEVTEVHVV----YGVYDIVVK--VEADS---M---DKLKDFVTNTIRKLPKVRSTLTMIIVE 76 (83)
T ss_dssp HHHHHHHHTT-CTTEEEEEEC----SSSCSEEEE--EECSS---H---HHHHHHHHHTGGGSTTEEEEEEEECCT
T ss_pred HHHHHHHHhC-CCCeEEEEEE----eccCCEEEE--EEECC---H---HHHHHHHHHHhcCCCCEeEEEEEEEEE
Confidence 3566666655 6777665422 2543 5554 44442 2 344455566888899999887776543
No 22
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=25.90 E-value=72 Score=24.44 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHH
Q 016160 338 YFVEVDIVLPASMPLQEAHDIGE 360 (394)
Q Consensus 338 ~~vev~I~v~~~~~l~~ah~I~~ 360 (394)
+.|++++.+|++|+.+++.++..
T Consensus 3 FlV~m~V~~P~~~~~~~~~~~~a 25 (96)
T 1mli_A 3 FHVKMTVKLPVDMDPAKATQLKA 25 (96)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHH
Confidence 67999999999999998887654
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=25.73 E-value=1.8e+02 Score=20.49 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEE
Q 016160 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 378 (394)
Q Consensus 306 ~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vh 378 (394)
|..+.+|...+.++. ..|.++.....++...+.+.+.++.. +-.+++.++|+++++|.++...
T Consensus 16 ~G~L~~I~~~la~~~---inI~~i~~~~~~~~~~~~i~v~~~~~-------~~l~~l~~~L~~~~~V~~v~~~ 78 (88)
T 2ko1_A 16 NGMTNQITGVISKFD---TNIRTIVLNAKDGIFTCNLMIFVKNT-------DKLTTLMDKLRKVQGVFTVERL 78 (88)
T ss_dssp TTHHHHHHHHHTTSS---SCEEEEEEEECSSEEEEEEEEEESSH-------HHHHHHHHHHTTCTTEEEEEEE
T ss_pred CcHHHHHHHHHHHCC---CCeEEEEEEEcCCEEEEEEEEEECCH-------HHHHHHHHHHhcCCCceEEEEe
Confidence 567888998886632 34566666555544445555555531 2235777888999999876443
No 24
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=25.71 E-value=57 Score=26.04 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccEEEEEEe
Q 016160 353 QEAHDIGESLQEKLELLPEIERAFVHLD 380 (394)
Q Consensus 353 ~~ah~I~~~lq~~l~~~~~V~~v~Vhid 380 (394)
+.++-+...+++.++..|.++++.|+|+
T Consensus 46 eta~sLE~AIE~si~~QP~v~~v~V~I~ 73 (122)
T 2ogf_A 46 YNKESLERAIEEAMKNQPCVYDIKVKIR 73 (122)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEEC
T ss_pred ccHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 4577788899999999999999999998
No 25
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=25.47 E-value=2.9e+02 Score=22.98 Aligned_cols=78 Identities=10% Similarity=0.166 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeec--------CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEE
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFG--------SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAF 376 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G--------~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~ 376 (394)
-|..+.+|...+.++. ..|.+++....+ ..+++.+.+.+++..+. .++.+.+....+++ ++ ++.
T Consensus 103 ~~Gil~~v~~~l~~~~---~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~---~~l~~~l~~~~~~~-~~-~~~ 174 (192)
T 1u8s_A 103 KLGLTEKFTQFFAQRQ---IGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNL---MQLQEEFDALCTAL-DV-QGS 174 (192)
T ss_dssp CTTHHHHHHHHHHHTT---CCEEEEEEEEEC--------CEEEEEEEEEECTTSCH---HHHHHHHHHHHHHH-TC-EEE
T ss_pred CccHHHHHHHHHHHcC---CcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCH---HHHHHHHHHHHHHh-Cc-eEE
Confidence 3568899999997753 344555555443 24788888888765543 45666666555543 33 334
Q ss_pred EEEecCCCCCCccc
Q 016160 377 VHLDYEYTHRPEHA 390 (394)
Q Consensus 377 Vhid~~~~~~~eh~ 390 (394)
++-+-.+.+.+-|+
T Consensus 175 ~~~~~~~~~~~~~~ 188 (192)
T 1u8s_A 175 LNFIKNSQEGGSHH 188 (192)
T ss_dssp EEEEEC--------
T ss_pred EEEccccCCCCccc
Confidence 44333334444443
No 26
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=25.37 E-value=6.7e+02 Score=27.10 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=37.5
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHh--cCCCccEEEEEE
Q 016160 338 YFVEVDIVLPASMPLQEAHDIGESLQEKLE--LLPEIERAFVHL 379 (394)
Q Consensus 338 ~~vev~I~v~~~~~l~~ah~I~~~lq~~l~--~~~~V~~v~Vhi 379 (394)
-.+.+.+.+|+..++++..++.+++++.++ +.|+|++++..+
T Consensus 570 ~~i~v~v~~p~gtsle~t~~~~~~ie~~l~~~~~p~V~~v~s~~ 613 (1057)
T 4dx5_A 570 GVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVN 613 (1057)
T ss_dssp SEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEe
Confidence 467788999999999999999999999999 999998877655
No 27
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=24.34 E-value=73 Score=22.85 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=20.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016160 163 QYPIGKKRMQPLGILVFASVMATLGLQIILE 193 (394)
Q Consensus 163 ~~P~G~~R~E~l~~li~s~~m~~~~~~il~e 193 (394)
.|-|-|+.+. ++.++++.+++++|+.++..
T Consensus 8 PF~YDY~tLR-iGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 8 PFTYDYQSLQ-IGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp GGGCSTHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHhh-ccchHHHHHHHHHHHHHHHc
Confidence 3555666655 46677888888888876544
No 28
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=23.37 E-value=64 Score=19.36 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=18.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 016160 164 YPIGKKRMQPLGILVFASVMATLGLQII 191 (394)
Q Consensus 164 ~P~G~~R~E~l~~li~s~~m~~~~~~il 191 (394)
|+|-|+++. ++.++++.+++++|+.++
T Consensus 3 F~yDy~tLr-igGLi~a~vLfi~gi~ii 29 (31)
T 3n2f_G 3 FYYDYETVR-NGGLIFAALAFIVGLIII 29 (31)
T ss_dssp CCCCHHHHH-HHHTTTHHHHHHHHHHHH
T ss_pred CCCChHHHh-hcchhHHHHHHHHHHHHh
Confidence 666777765 455667777777777654
No 29
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=22.95 E-value=1.8e+02 Score=23.27 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCcccceeEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEec
Q 016160 308 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 381 (394)
Q Consensus 308 ~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~ 381 (394)
..+++...+.+ .|+|..++.+ .|+. +++.+.. +. . .++.+-+.++|.++|+|.+...++--
T Consensus 81 ~~~~~~~~l~~-~peV~~~~~v----tG~~d~~~~v~~--~d---~---~~l~~~l~~~l~~~~gV~~~~t~ivl 142 (152)
T 2cg4_A 81 DYPSALAKLES-LDEVTEAYYT----TGHYSIFIKVMC--RS---I---DALQHVLINKIQTIDEIQSTETLIVL 142 (152)
T ss_dssp GHHHHHHHHHT-CTTEEEEEEE----SSSCSEEEEEEE--SC---H---HHHHHHHHHTTTTSTTEEEEEEEECS
T ss_pred CHHHHHHHHhC-CcCeEEEEEE----ecccCEEEEEEE--CC---H---HHHHHHHHHHhhcCCCeeEEEEEEEE
Confidence 45667777765 7888776644 4653 5555443 32 2 34555566778889999887776643
No 30
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.98 E-value=2.8e+02 Score=22.53 Aligned_cols=62 Identities=13% Similarity=0.260 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCcccceeEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecC
Q 016160 307 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 382 (394)
Q Consensus 307 e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~ 382 (394)
+..+++.+.+.+ .|+|..++.+ .|+. +.+.+.+ + +. .++.+-+.+.+.++| |.++..++--.
T Consensus 77 ~~~~~~~~~l~~-~peV~~~~~v----tG~~D~~l~v~~--~---d~---~~l~~~l~~~l~~~~-V~~~~T~ivl~ 139 (162)
T 3i4p_A 77 EWLKRFSEVVSE-FPEVVEFYRM----SGDVDYLLRVVV--P---DI---AAYDAFYKRMIAKIE-IRDVSSAFAME 139 (162)
T ss_dssp HHHHHHHHHHHH-CTTEEEEEEC----CSSCSEEEEEEE--S---SH---HHHHHHHHHHHHHCC-CSEEEEEECSC
T ss_pred HHHHHHHHHHhc-CCCEEEeeec----CCCCCEEEEEEE--C---CH---HHHHHHHHHHhhcCC-eeEEEEEEEEE
Confidence 556777777766 7888776642 3654 6666554 2 23 344455666777888 98887776544
No 31
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=21.58 E-value=1.7e+02 Score=24.46 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCCCcccceeEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEE
Q 016160 305 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 377 (394)
Q Consensus 305 ~~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~V 377 (394)
.|..+++|..++.++. ..|+.+.+......-...+.++++.+ .+..+++.++|+++++|.+|.-
T Consensus 14 rpGvL~rI~~lfs~rg---~NI~Sl~v~~t~d~g~sritivV~~d------~~~leql~kQL~Kl~dV~~V~~ 77 (165)
T 2pc6_A 14 EAGALSRVAGLFSARG---YNIESLSVAPTEDPTLSRMTLVTNGP------DEIVEQITKQLNKLIEVVKLID 77 (165)
T ss_dssp STTHHHHHHHHHHHHT---CCCCEEEEEECSSTTEEEEEEEEEEC------HHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCcHHHHHHHHHHHCC---CcEEEEEEEecCCCCEEEEEEEEecc------HHHHHHHHHHhcCCCCEEEEEE
Confidence 3567889999887643 34566666544322234455555533 5677889999999999977653
No 32
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=20.57 E-value=2.4e+02 Score=22.37 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCCcccceeEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCccEEEEEEecC
Q 016160 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 382 (394)
Q Consensus 306 ~e~~~~I~~~~~~~~~~V~~i~~vr~~~~G~~-~~vev~I~v~~~~~l~~ah~I~~~lq~~l~~~~~V~~v~Vhid~~ 382 (394)
++..+++...+.+ .|+|..++. ..|+. +.+.+. .+. ..++.+-+.++|.++|+|.+...++--.
T Consensus 75 ~~~~~~~~~~l~~-~p~V~~~~~----~tG~~d~~~~v~--~~d------~~~l~~~l~~~l~~~~gV~~~~t~ivl~ 139 (150)
T 2pn6_A 75 KNYHVELGNKLAQ-IPGVWGVYF----VLGDNDFIVMAR--YKT------REEFMEKFLERVMSIPEVERTSTQVVVK 139 (150)
T ss_dssp TTHHHHHHHHHHT-STTEEEEEE----CSSSCSEEEEEE--ESS------HHHHHHHTHHHHTTCTTEEEEEEEECSC
T ss_pred hhHHHHHHHHHhc-Cchhhhhhh----hcCcCCEEEEEE--ECC------HHHHHHHHHHHhccCCCeeEEEEEEEEE
Confidence 5567777777765 788776553 23553 555443 332 3445566667888899998887776554
Done!