RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016160
(394 letters)
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 153 bits (388), Expect = 7e-44
Identities = 69/279 (24%), Positives = 135/279 (48%), Gaps = 15/279 (5%)
Query: 115 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPL 174
+L K+ A + +GSLA++A L SL+DLLS + P ++P G R++PL
Sbjct: 1 LLALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEPL 60
Query: 175 GILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR 234
L+ + ++ +G+ I+ ES+ L+S E+ ++ + L +V LLL +Y R
Sbjct: 61 AALIVSLLLLGVGVFILYESIERLISPEEIEPG------GILLVALISLVVNLLLALYLR 114
Query: 235 ------AFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDD-WMDPVGAIILALYTIRT 287
+ ++A A DV+ ++ L+ +LL DP+ ++++AL + T
Sbjct: 115 RAGRKIGKKSSALRADALHALVDVLGSLAVLIGLLLILLTGLPIADPLASLLIALLILYT 174
Query: 288 WSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLP 347
+ E+++ L+G S PE + ++ + + +R + G YFV++ I +
Sbjct: 175 GLRLLKESLSELLGASPDPELVDEIRDAL-EKLPGVLGVHDLRVWKSGPKYFVDIHIEVD 233
Query: 348 ASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLDYEYTH 385
+ ++EAH+I + ++ L E P I +H++
Sbjct: 234 PDLTVEEAHEIADEIERALKEKFPGIADVTIHVEPAPEV 272
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 152 bits (385), Expect = 4e-43
Identities = 77/299 (25%), Positives = 154/299 (51%), Gaps = 20/299 (6%)
Query: 90 MTKEERENLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFIL 149
M +EER L R A IS N+ L K+ A + +GS+A++A + SL D+++ I+
Sbjct: 2 MMEEERLKLVRR---AALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIV 58
Query: 150 WFT-AFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLT 208
S + P+ +P G + + L L+ + ++ G +I+LE+++ L+S +
Sbjct: 59 LIGLRISSKPPD-RDHPYGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQ-----P 112
Query: 209 KEQEQWVVGIMLSVTLVKLLLVVYCR----AFTNEIVKAYAQDHFFDVITNIIGLVAVLL 264
E +G+ L ++K L Y R ++ + A A H DV+T++ LV +L
Sbjct: 113 VEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLG 172
Query: 265 A--NYIDDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKS 322
+ + W+DP+ A++++LY ++T E+VN L+ + PE L+K+ + +
Sbjct: 173 SLLGWP--WLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGV 230
Query: 323 IRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLD 380
+ +R GS F++V I + + L+EAH+I + +++++ + P++ +H++
Sbjct: 231 KG-VHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVE 288
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 101 bits (254), Expect = 1e-24
Identities = 63/282 (22%), Positives = 130/282 (46%), Gaps = 28/282 (9%)
Query: 115 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSM-QTPNPYQYPIGKKRMQP 173
+L K+ + SGSLA++A + SL D+ + I A + + P ++P G R +
Sbjct: 1 LLMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALL-ALRISRRPADERHPFGHGRAEI 59
Query: 174 LGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYC 233
L L+ + + L I+ E++ L++ E + ++ + + +V L+L +Y
Sbjct: 60 LAALLNGLFLVVVALFILYEAIERLINPEPE-----IDGGTMLIVAIVGLIVNLILALYL 114
Query: 234 RAFT----NEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWS 289
+ ++A A D ++++ L+ LL + W DP+ A++++L + +
Sbjct: 115 HRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWHWADPIAALLISLLILY-TA 173
Query: 290 MTVL-ENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF-------GSHYFVE 341
+L E++N L+ + E L+++ K+I I V+ F++
Sbjct: 174 FRLLKESINVLLDAAPDEEDLEEIK-------KAILSIPGVKGVHDLHIWRIGPGKLFLD 226
Query: 342 VDIVLPASMPLQEAHDIG-ESLQEKLELLPEIERAFVHLDYE 382
V +V+ + L++AHDI E +E L+ P IE + ++
Sbjct: 227 VHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism].
Length = 296
Score = 52.7 bits (127), Expect = 1e-07
Identities = 56/292 (19%), Positives = 120/292 (41%), Gaps = 34/292 (11%)
Query: 105 AIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLS-GFILWFTAFSMQTPNPYQ 163
+ I+ + N+ ++ + +GSLA++A L L D L+ L + + +
Sbjct: 23 RLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATK-R 81
Query: 164 YPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQW--VVGIM-L 220
+ G KR++ L + A ++ + L I+ E+++ L VV I+ L
Sbjct: 82 FTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRL------LAPPPIHYSGMLVVAIIGL 135
Query: 221 SVTLVKLLLVVYCRAFTNEIVKAYAQDHFF-DVITNIIGLVAVLLANYID-DWMDPVGAI 278
V LV LL+ + AY H D + ++ ++A ++ + W+DP+ +I
Sbjct: 136 VVNLVSALLLHKGHEENLNMRGAYL--HVLGDALGSVGVIIAAIVIRFTGWSWLDPILSI 193
Query: 279 ILALYTI-RTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYT---- 333
++AL + W + E++N L+ + K+ +++ I V +
Sbjct: 194 VIALLILSSAWPLLK-ESLNILLEGVPEGIDIDKV-------REALLRIPGVASVHDLHV 245
Query: 334 ---FGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 382
G + + + +V+ + +A + + +L IE + L+ E
Sbjct: 246 WSITGGEHALTLHVVVD---EVADADAALDQIVRRLLEKYGIEHVTIQLETE 294
>gnl|CDD|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 314
Score = 52.8 bits (127), Expect = 1e-07
Identities = 48/281 (17%), Positives = 99/281 (35%), Gaps = 40/281 (14%)
Query: 102 ETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDL-LSGFILWFTAFSMQTPN 160
E L +RIS ++ A + + SGS++II + SL+D ++ L + + P
Sbjct: 18 EQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPR 77
Query: 161 PYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIML 220
++P G ++PL + + +++A L L ++ +L +L+ + + L
Sbjct: 78 DARFPYGFWHLEPLVLAINGTLLALLCLYALINALGSLLDGGREVEPG-----HAIAYTL 132
Query: 221 SVTLVKLLLVVY----CRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYID----DWM 272
+ R + ++ + + VA A + +
Sbjct: 133 VSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLLAGTKFAHL 192
Query: 273 ----DPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHID- 327
DP+ ++ L I TV + ++ P LQ+ H
Sbjct: 193 VVYADPMVLALVCLVFIPLPLGTVKSALREIL--LMTPNELQQ---------SIESHAHE 241
Query: 328 TVRAYTFGSHY----------FVEVDIVLPASMPLQEAHDI 358
V Y F S++ F+E+ ++P + D
Sbjct: 242 IVEKYGFPSYHVYVARVGRGLFIEIHFIIPRESDARNVEDW 282
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed.
Length = 299
Score = 51.6 bits (124), Expect = 2e-07
Identities = 60/275 (21%), Positives = 126/275 (45%), Gaps = 12/275 (4%)
Query: 97 NLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFI-LWFTAFS 155
+ AR + A + +L K++A +GS++++A+ +DSL+D+ + L +S
Sbjct: 4 SYARLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYS 63
Query: 156 MQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWV 215
+Q P ++ G + + L L + ++ L + L ++ L+S + V
Sbjct: 64 LQ-PADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMND--PGVGIIV 120
Query: 216 VGIMLSVTLVKLLLVVYCRAFTNEI-VKAYAQD--HF-FDVITNIIGLVAVLLANYIDDW 271
+ L TL+ LV + R + +A D H+ DV+ N L+A+ L+ Y
Sbjct: 121 TLVALICTLI---LVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHR 177
Query: 272 MDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRA 331
D + A+ + +Y + + E V SL+ R+ E Q++ + + + +R
Sbjct: 178 ADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRT 236
Query: 332 YTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL 366
G F+++ + + ++PL +AH I + +++ L
Sbjct: 237 RQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQAL 271
>gnl|CDD|213771 TIGR03076, near_not_gcvH, Chlamydial GcvH-like protein upstream
region protein. The H protein (GcvH) of the glycine
cleavage system shuttles the methylamine group of
glycine from the P protein to the T protein. Most
Chlamydia but lack the P and T proteins, and have a
single homolog of GcvH that appears deeply split from
canonical GcvH in molecular phylogenetic trees. The
protein family modeled here is observed so far only in
the Chlamydiae, always as part of a two-gene operon,
upstream of the homolog of GcvH. Its function is unknown
[Unknown function, General].
Length = 686
Score = 31.0 bits (70), Expect = 1.3
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 188 LQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQD 247
IL L ++ L+ ++ + GI V L K+LL NE++ Y+QD
Sbjct: 464 PGRILSELAQQEQKSEEVFLSAGKDSLLPGIQDGVRLAKVLL-------QNEVLDYYSQD 516
Query: 248 --HFFDVITN 255
+++ +I
Sbjct: 517 DEYYYTIIVK 526
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 31.1 bits (70), Expect = 1.3
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 41/160 (25%)
Query: 131 AIIASTLDSLLDLLSGFILW-FTAFSMQTPNPYQYPIGKKRMQPLGI--LVFASVMATLG 187
AII ++++SL SGF+++ F + Q N PIG G+ +++ +ATL
Sbjct: 287 AIITTSINSLTSFFSGFVVFSFLGYMAQKHN---VPIGDVAKDGPGLIFIIYPEAIATLP 343
Query: 188 LQII--------------------LESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKL 227
L + +ES+ T + +E +F L + +E + + I+LS L+ L
Sbjct: 344 LSSVWAVIFFIMLLTLGIDSAMGGMESVITGLIDEFKF-LHRHRELFTLFIVLSTFLISL 402
Query: 228 LLVVYCRAFTNEIVKAYA-QDHF-------FDVITNIIGL 259
V TN + + DHF F V+ IG+
Sbjct: 403 FCV------TNGGIYVFTLLDHFAAGTSILFGVLIEAIGI 436
>gnl|CDD|130023 TIGR00948, 2a75, L-lysine exporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 177
Score = 29.3 bits (66), Expect = 2.7
Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 111 VANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSG---FILWFTAFS----MQTPNPYQ 163
+ ++VL AA V+ G A++A++ L L G F+LW+ + + P
Sbjct: 31 ICDLVLIAAGVF-----GVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAWRGPGALV 85
Query: 164 YPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGI-MLSV 222
P K+M +L + L + L+++ + + QF+ + +W+ ++
Sbjct: 86 -PDEPKKMGLKKVLAMTLAVTLLNPHVYLDTVVLIGALGLQFS---DLLRWLFAAGAIAA 141
Query: 223 TLVKLLLV 230
+LV +
Sbjct: 142 SLVWFASL 149
>gnl|CDD|178526 PLN02938, PLN02938, phosphatidylserine decarboxylase.
Length = 428
Score = 29.8 bits (67), Expect = 3.0
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 4 PVARESDEETSLLAQQGNVDRSWRLNFDGFQVS------PERTEKKPPRGLHDCLGVLGP 57
P+ E EE + +SW +VS + P +GL C+ LGP
Sbjct: 208 PMTAEGKEEKEEETLKDKSSKSW------LRVSLASPKLRDPVSASPMKGLFYCVIYLGP 261
Query: 58 ED 59
D
Sbjct: 262 GD 263
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, through
facilitating the uptake of released neurotransmitters
from the extracellular space into neurons and glial
cells. NTTs are the target of a range of therapeutic
drugs for the treatment of psychiatric diseases, such as
major depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 417
Score = 29.8 bits (68), Expect = 3.1
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 26/124 (20%)
Query: 131 AIIASTLDSLLDLLSGF----ILWFTAFSMQTPN-------PY----QYPIGKKRM---Q 172
A+I S L++L LL+GF +L F A + P P YP +M Q
Sbjct: 223 ALIVSILNTLTSLLAGFVIFSVLGFLAHELGVPVADVVKGGPGLAFVVYPEAIAKMPVPQ 282
Query: 173 PLGILVFASVMATLGL--QI-ILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLL 229
+L F ++ LGL Q I+E++ T + D+F ++++ V + V LL
Sbjct: 283 LWSVLFFF-MLFLLGLDSQFAIVETIVTAI--VDEFPKLRKRKWLVTLGVCVVGF--LLG 337
Query: 230 VVYC 233
+ Y
Sbjct: 338 LPYV 341
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 29.0 bits (66), Expect = 4.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 179 FASVMATLGLQI-ILESLRTLVSNED 203
FAS A+LG ++ I+E+L ++ ED
Sbjct: 187 FASAYASLGAEVTIVEALPRILPGED 212
>gnl|CDD|215923 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.
Length = 182
Score = 28.6 bits (64), Expect = 4.5
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 56 GPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMTK 92
+ +Y+ + +++ + N +D LA G P K
Sbjct: 93 LSGLSQDDYFSKALKLKDKLNLLDILASAGIKPSDGK 129
>gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in
eukaryotes is mediated by at least in part by the
budding and fusion of intracellular transport vesicles
that selectively carry cargo proteins and lipids from
donor to acceptor organelles. The two main classes of
vesicular carriers within the endocytic and the
biosynthetic pathways are COP- and clathrin-coated
vesicles. Formation of COPII vesicles requires the
ordered assembly of the coat built from several
cytosolic components GTPase Sar1, complexes of
Sec23-Sec24 and Sec13-Sec31. The process is initiated by
the conversion of GDP to GTP by the GTPase Sar1 which
then recruits the heterodimeric complex of Sec23 and
Sec24. This heterodimeric complex generates the
pre-budding complex. The final step leading to membrane
deformation and budding of COPII-coated vesicles is
carried by the heterodimeric complex Sec13-Sec31. The
members of this CD belong to the Sec23-like family. Sec
24 is very similar to Sec23. The Sec23 and Sec24
polypeptides fold into five distinct domains: a
beta-barrel, a zinc finger, a vWA or trunk, an all
helical region and a carboxy Gelsolin domain. The
members of this subgroup carry a partial MIDAS motif and
have the overall Para-Rossmann type fold that is
characteristic of this superfamily.
Length = 244
Score = 28.4 bits (64), Expect = 5.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 122 YASVKSGSLAIIASTLDSLLDLLSGF 147
Y ++KSG LA L S LD L G
Sbjct: 14 YNAIKSGLLATACEALLSNLDNLPGD 39
>gnl|CDD|234772 PRK00458, PRK00458, S-adenosylmethionine decarboxylase proenzyme;
Provisional.
Length = 127
Score = 27.7 bits (62), Expect = 6.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 99 ARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDS 139
R E + + +ANM L K + K G +++IA L+S
Sbjct: 35 ERLEQIVKEAAKIANMTLLDIKSWKFGKKGGVSVIALVLES 75
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 28.5 bits (64), Expect = 7.8
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 275 VGAIILALYTIRTWSMTV----LENVNSLVGRSAAPEYLQKLTYLC 316
V A+ L + T ++ + + N++V A E L + +C
Sbjct: 307 VAAVPEGLPAVVTIALALGAQRMAKDNAIVRSLNAIETLGSVDVIC 352
>gnl|CDD|198411 cd10429, GAAP_like, Golgi antiapoptotic protein. GAAP (or
transmembrane BAX inhibitor motif containing 4) is a
regulator of apoptosis that is related to the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. Human GAAP has been linked
to the modulation of intracellular fluxes of Ca(2+), by
suppressing influx from the extracellular medium and
reducing release from intracellular stores. A viral
homolog (vaccinia virus vGAAP) acts similar to its human
counterpart in inhibiting apoptosis.
Length = 233
Score = 28.0 bits (63), Expect = 8.0
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 215 VVGIMLSVTLVKLLLVVYCRAF-TNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMD 273
V I LSV L L F + +K + Q H + + ++IG + +L+A Y
Sbjct: 34 VYSI-LSVQL--LATTAVSALFYLSPSIKTFVQSHPWLFLISLIGSLILLIALYWKRHSH 90
Query: 274 PVGAIILALYTI 285
PV I+L+L+T+
Sbjct: 91 PVNLILLSLFTL 102
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 28.4 bits (63), Expect = 8.0
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 164 YPIGKKRM--QPLGILVFASVMATLGLQIILESLRTLVSN-EDQFN--LTKEQEQWVVGI 218
YP R+ P ++F ++ TLGL + ++ T+V++ D+F L + + +
Sbjct: 360 YPEALTRLPLSPFWAIIFFLMLLTLGLDTMFATIETIVTSVSDEFPKYLRTHKPLFTLVC 419
Query: 219 MLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAV 262
+S ++ ++ + ++V YA + VI I LV +
Sbjct: 420 CISFFIMGFPMITQGGMYMLQLVDTYAASYSL-VIIAIFELVGI 462
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,321,606
Number of extensions: 1998240
Number of successful extensions: 2033
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2007
Number of HSP's successfully gapped: 48
Length of query: 394
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 295
Effective length of database: 6,546,556
Effective search space: 1931234020
Effective search space used: 1931234020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)