RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016160
(394 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 148 bits (375), Expect = 4e-42
Identities = 57/285 (20%), Positives = 124/285 (43%), Gaps = 16/285 (5%)
Query: 103 TLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFI-LWFTAFSMQTPNP 161
+ A + +L K++A +GS++I+A+ +DSL+D+ + L +S+Q +
Sbjct: 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADD 62
Query: 162 YQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLS 221
+ G + + L L + ++ L + L ++ L+S V + +
Sbjct: 63 -NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPT-----PMTDPGVGVIVTIV 116
Query: 222 VTLVKLLLVVYCRAFTNEI----VKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGA 277
+ ++LV + R V+A + DV+ N L+A+ L+ Y D + A
Sbjct: 117 ALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFA 176
Query: 278 IILALYTIRT-WSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS 336
+ + +Y + + M E V SL+ R+ E Q++ + + +R G
Sbjct: 177 LGIGIYILYSALRM-GYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGP 234
Query: 337 HYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLD 380
F+++ + + S+PL +AH + + +++ + P + +H D
Sbjct: 235 TRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSD-VIIHQD 278
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 58.6 bits (142), Expect = 4e-11
Identities = 14/63 (22%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 319 HHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFV 377
++ + VR G+ YF+E+DI + M +++AH++ +++++ + +IE +
Sbjct: 21 RFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTI 80
Query: 378 HLD 380
H++
Sbjct: 81 HVE 83
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 56.6 bits (137), Expect = 1e-10
Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 299 LVGRSAAPEYLQKLTYLCWNHHKS-IRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHD 357
L+ PE ++++ + + ++ G F+E +V+ P++EAH
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHR 61
Query: 358 IGESLQEKL-ELLPEIERAFVHLDYEYTHRPEHAQAH 393
+ + L+ L + P ++ A +H++ PE +
Sbjct: 62 LCDELERALAQAFPGLQ-ATIHVE------PEGERKR 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 5e-07
Identities = 56/460 (12%), Positives = 123/460 (26%), Gaps = 119/460 (25%)
Query: 2 VEPVARE--SDEETSLLAQQGN-VDRSWRLNFDGFQVSPERTEKKPPRGLHDCLGV---- 54
V+ + + S EE + + V + RL F E + + + + L +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMVQ---KFVEEVLRINYKF 93
Query: 55 ---------LGPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMTKEERENLARSETLA 105
P Y +Q+ ++ +N+ A+ V + L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKY-NVS--RLQPYLKL---RQAL 144
Query: 106 IRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYP 165
+ + N+++ S K+ +A+ + + I W
Sbjct: 145 LELRPAKNVLIDGVL--GSGKT-WVALDVCLSYKVQCKMDFKIFWLN------------- 188
Query: 166 IGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQ-EQWVVGIMLSVTL 224
+ P +L ++ L QI + + + L + + ++ S
Sbjct: 189 LKNCN-SPETVL---EMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 225 VKLLLV---VYCRAFTNEIVKAYAQDHFFD------VITNIIGLVAVLLANY-----IDD 270
LLV V + A F+ + T + L A +D
Sbjct: 244 ENCLLVLLNVQ----NAKAWNA------FNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 271 WMDPV----GAIILALYTIRTWSMTVLE------NVN----SLVGRS-----AAPEYLQK 311
+ +L Y + N S++ S A + +
Sbjct: 294 HSMTLTPDEVKSLLLKYL----DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 312 LTYLCWNHHKSIRH-IDTVRAYTFGSHY-----FVE-VDI---VLP---ASMPLQEAHDI 358
C I ++ + + + F I +L + + +
Sbjct: 350 --VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 359 GESLQEK--LELLPEIERAFVH---LDYEYTHRPEHAQAH 393
L + +E P+ + L+ + H
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELK-VKLENEYALH 446
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.012
Identities = 53/335 (15%), Positives = 105/335 (31%), Gaps = 124/335 (37%)
Query: 88 PGMTKEEREN--LAR----------SETLAIRISN-VAN-----MVLFAAK--------- 120
GM + + A+ +T I + V N + F +
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 121 ---VYASVKSGSLAIIASTLDSLLDLLSGFI-------LWFTAFSMQTPNPYQYP----I 166
++ ++ G L + + + + L T F T Q P +
Sbjct: 1689 SAMIFETIVDGKLK-TEKIFKEINEHSTSYTFRSEKGLLSATQF---T----Q-PALTLM 1739
Query: 167 GK---KRMQPLGILVFASVMA--TLGLQIILE-SLRTLVSNEDQFNLTKEQEQWVVGIML 220
K + ++ G++ + A +LG E + L S + +M
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLG-----EYA--ALAS--------------LADVM- 1777
Query: 221 SV-TLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAII 279
S+ +LV++ V+ R T + A +D +I + +A + + ++
Sbjct: 1778 SIESLVEV---VFYRGMT--MQVAVPRDELGRSNYGMIAINPGRVAASFSQ--EALQYVV 1830
Query: 280 LALYTIRTWSMTVLE--NVNS----LV--GRSAAPEYLQKLTYLCWNHHKSIRHIDTVRA 331
+ W ++E N N V G A L +T + N K ++ ID +
Sbjct: 1831 ERVGKRTGW---LVEIVNYNVENQQYVAAGDLRA---LDTVTNVL-NFIK-LQKIDIIE- 1881
Query: 332 YTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL 366
L S+ L+E ++ L
Sbjct: 1882 --------------LQKSLSLEE-------VEGHL 1895
Score = 35.8 bits (82), Expect = 0.027
Identities = 46/295 (15%), Positives = 80/295 (27%), Gaps = 91/295 (30%)
Query: 100 RSETLA---IRIS-NVANMVLFAAKVYASVKSGSLAIIASTLD---------SLLDLLSG 146
R TL+ + V F A ++ I+ + + +L+
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQ---LQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 147 FILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESL-RTLVSNED-- 203
F L + + ++ Q+ V L + L + D
Sbjct: 64 F-LGYVSSLVEPSKVGQF---------------DQV-----LNLCLTEFENCYLEGNDIH 102
Query: 204 --QFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA--FTNEIVKAYAQDHFFD-VITNIIG 258
L +E + ++ K L+ Y A + F V
Sbjct: 103 ALAAKLLQENDT-------TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 259 LVAVL-----LANYIDDWMDPVGAIILA-LYT-----IRTWSMTVLENVNSLV--GRSAA 305
LVA+ +Y ++ L LY + E ++ L+ A
Sbjct: 156 LVAIFGGQGNTDDYFEE---------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 306 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPL----QEAH 356
+ Q L L W + S Y + + P S PL Q AH
Sbjct: 207 KVFTQGLNILEWLENPSNTP---------DKDYLLSI----PISCPLIGVIQLAH 248
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.28
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 14/42 (33%)
Query: 94 ERENLARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIAS 135
E++ L + + + K+YA + +LAI A+
Sbjct: 18 EKQALKKLQA--------------SLKLYADDSAPALAIKAT 45
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger}
Length = 247
Score = 31.0 bits (69), Expect = 0.62
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 49 HDCLGVLGPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMTK 92
C ++ V +++QQ V + + + AL++ G P
Sbjct: 124 PSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDA 167
>3dnu_A Protein HIPA; persistence, MDT, multidrug resistance, unknown
function; 1.54A {Escherichia coli} PDB: 3dnt_A 3dnv_A*
3dnw_A* 3hzi_A* 2wiu_A 3fbr_A*
Length = 440
Score = 31.2 bits (70), Expect = 0.71
Identities = 8/66 (12%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 23 DRSWRLNFDGFQVSPE---RTEKKPPRGLHDCLGVLGPEDNVAEYYQQQVQMLEGFNEMD 79
W + +S + + + L P+ + + + D
Sbjct: 29 APEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFD 88
Query: 80 ALAERG 85
L+E G
Sbjct: 89 LLSEIG 94
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha
helical integral membrane protein, STRU genomics, PSI-2;
HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A*
3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A*
3m78_A* 3m76_A* 3m72_A*
Length = 314
Score = 30.7 bits (69), Expect = 0.81
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 6/126 (4%)
Query: 168 KKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKL 227
+ PL F + L + L L + +V + + + +
Sbjct: 3 ITKPFPLPTGYFGIPLGLAALSLAWFHLENLFPAARMVSDV----LGIVASAVWILFILM 58
Query: 228 LLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRT 287
F E V+A +I + +L+ + + W + +++ + TI
Sbjct: 59 YAYKLRYYF--EEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVLIWIGTIGQ 116
Query: 288 WSMTVL 293
+ L
Sbjct: 117 LLFSTL 122
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A
2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A
1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Length = 375
Score = 28.6 bits (64), Expect = 3.7
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 189 QIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDH 248
Q +L LR+ + + + +E +Q + + + K +A
Sbjct: 246 QHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAA---------------QQEKDWADYL 290
Query: 249 FFDVITNIIGLVAVLLANYID 269
F D ++IGL +L Y++
Sbjct: 291 FRDG--SMIGLNKDILCQYVE 309
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG
BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1
Length = 196
Score = 27.4 bits (60), Expect = 6.0
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 56 GPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMT 91
N Y+ +++ + F+ + L +PG +
Sbjct: 96 QKRYNQNTYFGLALRLKDKFDLLRTLQTHRIIPGSS 131
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 6.1
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 24/88 (27%)
Query: 16 LAQQGNVDRSWRLNFDGFQVSPERTEKKPPRGLHDCLG-------VLGPEDNVAEYYQQQ 68
L Q+ R WR +R ++ D + ++ E+ Q+Q
Sbjct: 80 LTQEPESIRKWREEQR------KRLQEL------DAASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 69 VQMLEGFNEMDALAERGFVPGMTKEERE 96
+ +E + +A++ F ++ +
Sbjct: 128 SEQVEKNKINNRIADKAFY-----QQPD 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,050,599
Number of extensions: 364679
Number of successful extensions: 703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 17
Length of query: 394
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,021,377
Effective search space: 1198370346
Effective search space used: 1198370346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)