RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016160
(394 letters)
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 114 bits (287), Expect = 7e-31
Identities = 42/204 (20%), Positives = 87/204 (42%), Gaps = 1/204 (0%)
Query: 99 ARSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQT 158
R + A + +L K++A +GS++I+A+ +DSL+D+ +
Sbjct: 2 GRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQ 61
Query: 159 PNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGI 218
P + G + + L L + ++ L + L ++ L+S + +V +
Sbjct: 62 PADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVAL 121
Query: 219 MLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAI 278
+ ++ LV R ++ V+A + DV+ N L+A+ L+ Y D + A+
Sbjct: 122 ICTIILV-SFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFAL 180
Query: 279 ILALYTIRTWSMTVLENVNSLVGR 302
+ +Y + + E V SL+ R
Sbjct: 181 GIGIYILYSALRMGYEAVQSLLDR 204
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
{Escherichia coli [TaxId: 562]}
Length = 82
Score = 74.0 bits (182), Expect = 2e-17
Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 303 SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESL 362
+ E Q++ + + +R G F+++ + + S+PL +AH + + +
Sbjct: 1 ALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQV 59
Query: 363 QEKLELLPEIERAFVHLD 380
++ + +H D
Sbjct: 60 EQAILRRFPGSDVIIHQD 77
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus
thermophilus [TaxId: 274]}
Length = 82
Score = 67.1 bits (164), Expect = 8e-15
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 306 PEYLQKLTYLCWNHHKS-IRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQE 364
PE ++++ + + ++ G F+E +V+ P++EAH + + L+
Sbjct: 4 PEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELER 63
Query: 365 KLELLPEIERAFVHLDYE 382
L +A +H++ E
Sbjct: 64 ALAQAFPGLQATIHVEPE 81
>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId:
4844]}
Length = 222
Score = 29.0 bits (64), Expect = 0.86
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 50 DCLGVLGPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMT 91
DC +++ +Y+Q+ + + +N A + G PG T
Sbjct: 119 DCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGGT 160
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes
lepiniana) [TaxId: 282652]}
Length = 206
Score = 27.4 bits (60), Expect = 2.2
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 59 DNVAEYYQQQVQMLEGFNEMDALAERGFVPGMTK 92
Y+++ +++ +N AL + G V +K
Sbjct: 111 KGEWNYFKKTLKLFMKYNVDKALEDAGIVASNSK 144
>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia
coli [TaxId: 562]}
Length = 314
Score = 27.9 bits (61), Expect = 2.2
Identities = 29/208 (13%), Positives = 55/208 (26%), Gaps = 40/208 (19%)
Query: 61 VAEYYQQQVQMLEGFNEMDALAER------------GFVPG---------MTKEERENLA 99
+ +YQQ +Q + L +R GF P E
Sbjct: 9 LNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSL 68
Query: 100 RSETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTP 159
+ + + F +V ++ +I G + +
Sbjct: 69 IDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIG---------FGGR--VLGNDTPKYL 117
Query: 160 NPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIM 219
N + I K Q G+ A +++E D L + + V +
Sbjct: 118 NSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYM------DVVALAQYGINYAVASL 171
Query: 220 LSVTLVKLLLVVYCRAFTNEIVKAYAQD 247
+ T + TN ++ Y D
Sbjct: 172 GTSTTADHIQ--LLFRATNNVICCYDGD 197
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 316
Score = 27.3 bits (60), Expect = 3.2
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 283 YTIRTWSMTVLENVNSLVGRSAAPEYLQKLTY-LC---WNHHKSIR 324
I+ S+ ++ + + + Y L W +S
Sbjct: 249 TPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRN 294
>gi|152988212|ref|YP_001348091.1|(1-96:96) muconolactone
delta-isomerase [Pseudomonas aeruginosa PA7]
gi|150963370|gb|ABR85395.1| muconolactone
delta-isomerase [Pseudomonas aeruginosa PA7] E=1e-44
s/c=1.89 id=85% cov=101%
Length = 96
Score = 25.4 bits (56), Expect = 4.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 338 YFVEVDIVLPASMPLQEAHDI 358
+ V++ + LPA M Q A +
Sbjct: 3 FHVKMTVKLPADMDPQRAERL 23
>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed
(Calystegia sepium) [TaxId: 47519]}
Length = 207
Score = 26.7 bits (58), Expect = 4.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 60 NVAEYYQQQVQMLEGFNEMDALAERGFVPGMTKE 93
N EY+ + + +N + L+E G++P T E
Sbjct: 114 NQYEYFSTTLMLYFKYNISEILSESGYLPSNTAE 147
>d2b1ya1 b.156.1.1 (A:4-104) Hypothetical protein Atu1913
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 101
Score = 25.6 bits (56), Expect = 4.6
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 91 TKEERENLARSETLAIRISNVANMVLFAAKVYASVKSG 128
T + + L TL I +S+V N+ L +
Sbjct: 6 THYDLKELRAGTTLEISLSSVNNVRLMTGANFQRFTEL 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,432,629
Number of extensions: 65301
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 12
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)