Query 016162
Match_columns 394
No_of_seqs 226 out of 2080
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02306 hydroxypyruvate reduc 100.0 1.8E-79 3.8E-84 614.3 40.5 385 1-385 1-385 (386)
2 KOG0068 D-3-phosphoglycerate d 100.0 6.8E-74 1.5E-78 544.6 28.5 340 17-387 8-350 (406)
3 TIGR01327 PGDH D-3-phosphoglyc 100.0 8.5E-72 1.8E-76 581.3 36.5 347 17-393 1-347 (525)
4 COG0111 SerA Phosphoglycerate 100.0 1.2E-71 2.6E-76 546.0 33.7 311 14-351 2-313 (324)
5 PRK15409 bifunctional glyoxyla 100.0 1.6E-70 3.6E-75 539.4 36.7 317 14-354 1-319 (323)
6 PRK13581 D-3-phosphoglycerate 100.0 5.9E-71 1.3E-75 575.1 35.5 347 16-393 1-348 (526)
7 COG1052 LdhA Lactate dehydroge 100.0 6E-70 1.3E-74 533.6 34.8 317 14-354 1-322 (324)
8 PRK13243 glyoxylate reductase; 100.0 4E-68 8.7E-73 525.2 36.6 318 14-354 1-322 (333)
9 PRK11790 D-3-phosphoglycerate 100.0 6E-68 1.3E-72 536.5 35.1 316 11-355 6-327 (409)
10 PRK06487 glycerate dehydrogena 100.0 1.1E-67 2.3E-72 518.9 34.8 290 30-349 18-313 (317)
11 PRK08410 2-hydroxyacid dehydro 100.0 1.4E-67 3.1E-72 516.7 34.0 301 17-348 2-311 (311)
12 PRK06932 glycerate dehydrogena 100.0 2.5E-66 5.5E-71 508.4 32.9 274 50-348 33-314 (314)
13 PLN03139 formate dehydrogenase 100.0 1.4E-64 3E-69 505.5 35.5 301 30-351 68-371 (386)
14 PRK07574 formate dehydrogenase 100.0 1.1E-64 2.3E-69 506.6 33.8 303 31-354 62-367 (385)
15 PLN02928 oxidoreductase family 100.0 2.6E-64 5.6E-69 500.2 35.9 323 9-351 12-342 (347)
16 PRK08605 D-lactate dehydrogena 100.0 7.4E-63 1.6E-67 487.7 34.0 317 14-354 2-332 (332)
17 PRK12480 D-lactate dehydrogena 100.0 1.9E-62 4.2E-67 483.8 33.8 313 16-354 2-330 (330)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 1.1E-61 2.5E-66 470.8 26.2 304 32-354 31-335 (336)
19 PRK15438 erythronate-4-phospha 100.0 2.5E-58 5.3E-63 459.0 30.0 279 16-350 1-283 (378)
20 PRK15469 ghrA bifunctional gly 100.0 1.1E-57 2.3E-62 446.6 31.0 298 17-354 2-307 (312)
21 PRK00257 erythronate-4-phospha 100.0 1.6E-57 3.5E-62 454.4 29.8 283 16-353 1-287 (381)
22 PRK06436 glycerate dehydrogena 100.0 8.5E-57 1.8E-61 438.1 31.5 255 62-354 34-289 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 2.6E-47 5.7E-52 345.3 17.3 177 128-322 1-178 (178)
24 KOG0067 Transcription factor C 100.0 1.2E-31 2.5E-36 258.6 13.0 281 51-354 62-349 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 2.9E-21 6.2E-26 196.5 16.1 171 92-306 197-368 (476)
26 PF00389 2-Hacid_dh: D-isomer 99.8 7.5E-20 1.6E-24 157.7 16.4 101 18-127 1-101 (133)
27 TIGR02853 spore_dpaA dipicolin 99.8 1.1E-19 2.4E-24 176.4 16.8 198 29-274 16-242 (287)
28 PRK08306 dipicolinate synthase 99.7 2.3E-15 4.9E-20 147.0 19.5 195 29-273 17-242 (296)
29 PLN02494 adenosylhomocysteinas 99.6 1.3E-15 2.9E-20 154.9 10.7 121 161-302 250-373 (477)
30 TIGR00936 ahcY adenosylhomocys 99.6 2.3E-14 4.9E-19 144.7 18.1 121 161-301 191-312 (406)
31 PRK05476 S-adenosyl-L-homocyst 99.5 1.7E-12 3.8E-17 131.8 20.0 156 92-284 155-312 (425)
32 PRK13403 ketol-acid reductoiso 99.5 1.9E-13 4.2E-18 133.1 9.6 93 161-270 12-104 (335)
33 PF03446 NAD_binding_2: NAD bi 99.3 2.3E-12 5.1E-17 114.9 8.3 115 166-297 2-117 (163)
34 COG2084 MmsB 3-hydroxyisobutyr 99.3 6.7E-12 1.4E-16 121.1 11.4 124 166-303 1-126 (286)
35 PF00670 AdoHcyase_NAD: S-aden 99.3 9.2E-12 2E-16 110.2 10.7 103 161-283 19-122 (162)
36 cd00401 AdoHcyase S-adenosyl-L 99.2 3.6E-10 7.8E-15 114.7 17.9 105 160-284 197-302 (413)
37 TIGR01505 tartro_sem_red 2-hyd 99.2 4.7E-11 1E-15 116.1 10.8 111 167-292 1-113 (291)
38 PRK11559 garR tartronate semia 99.2 6.6E-11 1.4E-15 115.2 10.9 123 166-303 3-127 (296)
39 PRK15461 NADH-dependent gamma- 99.2 1.3E-10 2.8E-15 113.5 10.8 112 166-292 2-115 (296)
40 PRK12490 6-phosphogluconate de 99.2 1.9E-10 4.1E-15 112.5 11.8 113 167-297 2-117 (299)
41 PRK05479 ketol-acid reductoiso 99.1 3.3E-10 7.1E-15 111.7 9.7 119 161-304 13-131 (330)
42 PRK09599 6-phosphogluconate de 99.1 8.2E-10 1.8E-14 108.1 11.4 110 167-292 2-114 (301)
43 PLN02350 phosphogluconate dehy 99.0 1.4E-09 3.1E-14 112.7 12.2 128 167-303 8-138 (493)
44 PLN02256 arogenate dehydrogena 99.0 4.1E-09 8.9E-14 103.4 14.5 136 163-321 34-174 (304)
45 PLN02712 arogenate dehydrogena 99.0 1.4E-09 3.1E-14 116.9 11.5 112 159-287 363-475 (667)
46 PTZ00142 6-phosphogluconate de 99.0 4.3E-09 9.3E-14 108.9 11.9 128 166-303 2-132 (470)
47 PRK15059 tartronate semialdehy 99.0 4.5E-09 9.8E-14 102.6 11.4 113 167-297 2-116 (292)
48 PRK07417 arogenate dehydrogena 98.9 1.7E-08 3.7E-13 97.8 14.1 136 167-328 2-147 (279)
49 TIGR00872 gnd_rel 6-phosphoglu 98.9 8.6E-09 1.9E-13 100.8 11.8 110 166-292 1-113 (298)
50 PRK08655 prephenate dehydrogen 98.9 1.4E-08 3.1E-13 104.4 13.7 134 166-321 1-137 (437)
51 PLN02858 fructose-bisphosphate 98.9 6.6E-09 1.4E-13 119.5 11.5 120 164-298 3-124 (1378)
52 PRK06545 prephenate dehydrogen 98.9 2.6E-08 5.7E-13 100.0 14.1 144 166-329 1-155 (359)
53 PRK08818 prephenate dehydrogen 98.9 3.9E-08 8.4E-13 98.7 15.2 122 163-320 2-130 (370)
54 KOG0409 Predicted dehydrogenas 98.9 7.4E-09 1.6E-13 99.2 8.8 118 163-297 33-153 (327)
55 PLN02858 fructose-bisphosphate 98.9 1E-08 2.2E-13 117.9 11.4 109 165-288 324-434 (1378)
56 TIGR00873 gnd 6-phosphoglucona 98.9 1.8E-08 3.9E-13 104.3 12.1 125 167-302 1-128 (467)
57 PRK14189 bifunctional 5,10-met 98.9 8.5E-08 1.8E-12 92.7 15.8 171 31-276 55-234 (285)
58 PRK14194 bifunctional 5,10-met 98.8 1.4E-07 3.1E-12 91.8 16.9 169 32-275 57-234 (301)
59 PRK09260 3-hydroxybutyryl-CoA 98.8 1.4E-07 3E-12 91.8 16.5 128 166-299 2-141 (288)
60 COG0499 SAM1 S-adenosylhomocys 98.8 1.3E-08 2.9E-13 99.4 9.2 103 162-284 206-309 (420)
61 TIGR01692 HIBADH 3-hydroxyisob 98.8 1.3E-08 2.8E-13 99.0 9.2 111 170-297 1-113 (288)
62 PRK07502 cyclohexadienyl dehyd 98.8 5.4E-08 1.2E-12 95.5 13.6 144 164-329 5-160 (307)
63 PRK07066 3-hydroxybutyryl-CoA 98.8 9.1E-08 2E-12 94.5 14.9 131 166-300 8-144 (321)
64 TIGR00465 ilvC ketol-acid redu 98.8 2.1E-08 4.6E-13 98.7 10.1 98 163-277 1-98 (314)
65 COG0287 TyrA Prephenate dehydr 98.8 8.2E-08 1.8E-12 93.0 13.8 136 165-321 3-145 (279)
66 PLN02545 3-hydroxybutyryl-CoA 98.8 1.9E-07 4.1E-12 91.1 16.3 117 166-287 5-132 (295)
67 PRK08293 3-hydroxybutyryl-CoA 98.8 4.2E-07 9.2E-12 88.3 17.7 155 166-332 4-169 (287)
68 PRK11199 tyrA bifunctional cho 98.7 2.3E-07 5.1E-12 93.6 14.9 149 119-320 66-217 (374)
69 PRK14179 bifunctional 5,10-met 98.7 3.7E-07 8E-12 88.3 15.5 170 31-275 55-233 (284)
70 PRK14188 bifunctional 5,10-met 98.7 6.9E-07 1.5E-11 87.0 17.2 169 31-275 55-233 (296)
71 PF03807 F420_oxidored: NADP o 98.7 6.2E-08 1.3E-12 78.2 8.3 92 167-274 1-96 (96)
72 PRK15182 Vi polysaccharide bio 98.7 1.5E-07 3.3E-12 96.5 13.1 139 166-316 7-172 (425)
73 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 3.8E-07 8.2E-12 84.3 14.4 110 160-291 23-133 (200)
74 PRK14619 NAD(P)H-dependent gly 98.7 5E-08 1.1E-12 95.8 9.0 83 164-276 3-86 (308)
75 PRK11064 wecC UDP-N-acetyl-D-m 98.7 2.1E-07 4.6E-12 95.2 13.8 109 166-288 4-135 (415)
76 PRK07530 3-hydroxybutyryl-CoA 98.7 7.9E-07 1.7E-11 86.6 16.5 128 166-300 5-144 (292)
77 PRK14175 bifunctional 5,10-met 98.7 7.9E-07 1.7E-11 86.2 16.0 170 31-275 55-233 (286)
78 PF07991 IlvN: Acetohydroxy ac 98.7 7.2E-08 1.6E-12 85.3 7.8 96 163-275 2-97 (165)
79 PLN02712 arogenate dehydrogena 98.6 1E-07 2.2E-12 102.8 10.1 137 162-322 49-191 (667)
80 PRK05225 ketol-acid reductoiso 98.6 5.5E-08 1.2E-12 98.7 7.0 105 152-275 21-133 (487)
81 TIGR00518 alaDH alanine dehydr 98.6 1.3E-07 2.7E-12 95.4 9.5 103 162-272 164-267 (370)
82 PRK08507 prephenate dehydrogen 98.6 1.1E-06 2.3E-11 85.0 15.2 129 167-321 2-142 (275)
83 PLN02688 pyrroline-5-carboxyla 98.6 7.5E-07 1.6E-11 85.4 13.3 103 166-287 1-108 (266)
84 PRK07819 3-hydroxybutyryl-CoA 98.6 2.7E-06 5.8E-11 82.9 17.3 130 166-300 6-146 (286)
85 PRK05808 3-hydroxybutyryl-CoA 98.6 2.3E-06 5E-11 82.9 16.5 129 166-299 4-142 (282)
86 KOG1370 S-adenosylhomocysteine 98.6 1.8E-07 3.9E-12 89.6 8.2 95 162-276 211-305 (434)
87 PRK08268 3-hydroxy-acyl-CoA de 98.6 2.4E-06 5.2E-11 89.6 17.0 132 166-303 8-150 (507)
88 TIGR00561 pntA NAD(P) transhyd 98.5 7E-06 1.5E-10 85.5 20.0 227 29-273 21-285 (511)
89 PRK07679 pyrroline-5-carboxyla 98.5 5E-07 1.1E-11 87.5 10.6 106 165-287 3-112 (279)
90 PRK14806 bifunctional cyclohex 98.5 7.4E-07 1.6E-11 97.5 12.7 138 166-323 4-153 (735)
91 cd01065 NAD_bind_Shikimate_DH 98.5 1.6E-06 3.5E-11 75.8 11.8 114 162-290 16-132 (155)
92 PRK13302 putative L-aspartate 98.5 6.8E-07 1.5E-11 86.4 10.2 111 164-291 5-117 (271)
93 PRK14176 bifunctional 5,10-met 98.5 5E-06 1.1E-10 80.5 15.7 169 31-274 61-238 (287)
94 PRK06129 3-hydroxyacyl-CoA deh 98.5 4.6E-06 9.9E-11 82.0 15.6 120 166-288 3-132 (308)
95 PRK10792 bifunctional 5,10-met 98.5 8.3E-06 1.8E-10 79.0 16.9 170 31-275 56-234 (285)
96 PRK14178 bifunctional 5,10-met 98.5 5.4E-06 1.2E-10 80.0 15.4 170 31-275 49-227 (279)
97 TIGR03026 NDP-sugDHase nucleot 98.5 3.7E-06 8E-11 85.9 15.0 119 167-288 2-137 (411)
98 PRK14618 NAD(P)H-dependent gly 98.4 1.6E-06 3.6E-11 85.7 11.9 116 165-288 4-123 (328)
99 PF01488 Shikimate_DH: Shikima 98.4 6.5E-07 1.4E-11 77.4 7.7 105 162-278 9-115 (135)
100 PRK14191 bifunctional 5,10-met 98.4 6.2E-06 1.4E-10 79.8 15.0 170 31-275 54-232 (285)
101 cd01080 NAD_bind_m-THF_DH_Cycl 98.4 1E-06 2.3E-11 79.1 9.0 82 161-278 40-122 (168)
102 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.4 9E-06 2E-10 85.1 17.2 133 165-303 5-148 (503)
103 PRK06130 3-hydroxybutyryl-CoA 98.4 1.4E-05 3E-10 78.5 16.7 116 166-287 5-128 (311)
104 PRK06035 3-hydroxyacyl-CoA deh 98.4 1.7E-05 3.8E-10 77.2 17.3 130 166-300 4-146 (291)
105 PRK07531 bifunctional 3-hydrox 98.4 9.1E-06 2E-10 85.1 16.0 120 166-288 5-130 (495)
106 PRK00094 gpsA NAD(P)H-dependen 98.4 1.9E-06 4E-11 84.7 10.2 107 166-277 2-110 (325)
107 PRK12491 pyrroline-5-carboxyla 98.4 1.1E-06 2.3E-11 85.0 8.2 103 166-286 3-109 (272)
108 PRK15057 UDP-glucose 6-dehydro 98.4 5.8E-06 1.3E-10 83.9 13.9 137 167-316 2-159 (388)
109 PF02737 3HCDH_N: 3-hydroxyacy 98.4 5.4E-06 1.2E-10 75.3 12.0 144 167-320 1-154 (180)
110 PRK14170 bifunctional 5,10-met 98.4 2.3E-05 5.1E-10 75.8 16.9 170 31-275 54-232 (284)
111 PRK14183 bifunctional 5,10-met 98.3 1.9E-05 4.1E-10 76.3 15.4 169 32-275 55-232 (281)
112 PRK06928 pyrroline-5-carboxyla 98.3 5.7E-06 1.2E-10 80.1 11.7 105 166-286 2-110 (277)
113 PRK14172 bifunctional 5,10-met 98.3 4.2E-05 9.2E-10 73.8 17.1 170 31-275 55-233 (278)
114 TIGR01724 hmd_rel H2-forming N 98.3 1.5E-05 3.3E-10 77.9 13.7 114 177-304 32-146 (341)
115 PRK14169 bifunctional 5,10-met 98.3 3.1E-05 6.7E-10 74.9 15.7 170 31-275 53-231 (282)
116 PRK14173 bifunctional 5,10-met 98.3 3.3E-05 7.2E-10 74.9 15.6 171 31-276 52-231 (287)
117 PRK14186 bifunctional 5,10-met 98.3 3.8E-05 8.2E-10 74.8 15.9 171 31-276 55-234 (297)
118 PRK14171 bifunctional 5,10-met 98.2 5.6E-05 1.2E-09 73.3 16.9 170 31-274 55-233 (288)
119 PRK09424 pntA NAD(P) transhydr 98.2 0.00011 2.3E-09 77.0 20.1 253 5-273 1-286 (509)
120 PRK05472 redox-sensing transcr 98.2 1E-06 2.2E-11 82.1 4.3 133 122-288 62-201 (213)
121 PRK14190 bifunctional 5,10-met 98.2 9.4E-05 2E-09 71.7 17.8 171 31-276 55-234 (284)
122 PRK14166 bifunctional 5,10-met 98.2 4.5E-05 9.7E-10 73.8 15.3 170 31-274 53-231 (282)
123 PLN02897 tetrahydrofolate dehy 98.2 3.3E-05 7.2E-10 76.3 14.6 172 31-275 109-289 (345)
124 PLN02516 methylenetetrahydrofo 98.2 5.8E-05 1.2E-09 73.6 15.7 170 32-275 63-242 (299)
125 PRK14180 bifunctional 5,10-met 98.2 5.8E-05 1.3E-09 73.0 15.5 169 31-273 54-231 (282)
126 PF01210 NAD_Gly3P_dh_N: NAD-d 98.2 8.6E-06 1.9E-10 72.2 9.1 104 167-275 1-106 (157)
127 COG0686 Ald Alanine dehydrogen 98.2 3.2E-06 7E-11 81.7 6.7 102 162-272 165-268 (371)
128 PLN02616 tetrahydrofolate dehy 98.2 7.5E-05 1.6E-09 74.2 16.2 170 31-275 126-306 (364)
129 PRK14187 bifunctional 5,10-met 98.2 6.1E-05 1.3E-09 73.2 15.2 171 31-275 55-235 (294)
130 PRK07680 late competence prote 98.2 1.3E-05 2.7E-10 77.4 10.4 104 167-287 2-109 (273)
131 PRK14174 bifunctional 5,10-met 98.1 6.9E-05 1.5E-09 73.1 15.3 172 31-275 54-238 (295)
132 PRK09287 6-phosphogluconate de 98.1 1.2E-05 2.6E-10 83.1 10.6 117 176-303 1-120 (459)
133 PRK14177 bifunctional 5,10-met 98.1 0.00014 3E-09 70.5 17.0 168 31-273 56-232 (284)
134 PRK14181 bifunctional 5,10-met 98.1 0.00017 3.7E-09 69.9 17.4 171 31-275 49-232 (287)
135 PRK06476 pyrroline-5-carboxyla 98.1 8.7E-06 1.9E-10 77.8 8.4 104 167-289 2-108 (258)
136 PRK14184 bifunctional 5,10-met 98.1 8.3E-05 1.8E-09 72.1 14.9 168 31-273 54-234 (286)
137 PRK14167 bifunctional 5,10-met 98.1 0.00011 2.3E-09 71.7 15.5 171 31-275 54-236 (297)
138 PF10727 Rossmann-like: Rossma 98.1 4E-06 8.7E-11 71.9 4.9 92 165-272 10-104 (127)
139 PRK13304 L-aspartate dehydroge 98.1 1.4E-05 2.9E-10 77.1 9.1 107 166-290 2-113 (265)
140 PRK14182 bifunctional 5,10-met 98.1 0.00019 4.1E-09 69.4 16.5 171 31-275 53-232 (282)
141 PRK14193 bifunctional 5,10-met 98.1 0.00023 5E-09 69.0 17.1 200 31-326 55-265 (284)
142 PF01262 AlaDh_PNT_C: Alanine 98.1 9.6E-06 2.1E-10 72.7 7.0 110 161-272 16-139 (168)
143 PRK07634 pyrroline-5-carboxyla 98.1 3.7E-05 8E-10 72.6 11.2 108 164-288 3-113 (245)
144 PRK14168 bifunctional 5,10-met 98.1 0.00013 2.8E-09 71.1 15.1 171 31-275 56-240 (297)
145 PRK14185 bifunctional 5,10-met 98.0 0.00015 3.2E-09 70.6 15.3 171 31-275 54-236 (293)
146 cd05311 NAD_bind_2_malic_enz N 98.0 5.1E-05 1.1E-09 71.4 11.9 163 161-347 21-198 (226)
147 TIGR01035 hemA glutamyl-tRNA r 98.0 1.4E-05 3E-10 82.0 7.7 102 162-278 177-283 (417)
148 COG2085 Predicted dinucleotide 98.0 3.6E-05 7.7E-10 71.0 9.5 94 166-274 2-95 (211)
149 COG1023 Gnd Predicted 6-phosph 98.0 4.5E-05 9.7E-10 71.4 10.2 116 166-299 1-119 (300)
150 PLN00203 glutamyl-tRNA reducta 98.0 2.5E-05 5.4E-10 81.9 9.5 102 162-275 263-372 (519)
151 PF02882 THF_DHG_CYH_C: Tetrah 98.0 2.6E-05 5.7E-10 69.4 8.1 81 160-276 31-112 (160)
152 PRK11880 pyrroline-5-carboxyla 98.0 2.8E-05 6E-10 74.6 8.9 102 166-287 3-107 (267)
153 TIGR02371 ala_DH_arch alanine 97.9 4.2E-05 9E-10 75.9 9.5 97 165-275 128-225 (325)
154 TIGR01546 GAPDH-II_archae glyc 97.9 4E-05 8.7E-10 75.9 9.1 102 168-272 1-108 (333)
155 PRK14192 bifunctional 5,10-met 97.9 4.8E-05 1E-09 74.0 9.4 80 160-275 154-234 (283)
156 PRK06141 ornithine cyclodeamin 97.9 7.1E-05 1.5E-09 73.9 10.1 108 164-286 124-232 (314)
157 cd05213 NAD_bind_Glutamyl_tRNA 97.9 5E-05 1.1E-09 74.8 9.0 99 163-275 176-276 (311)
158 cd01079 NAD_bind_m-THF_DH NAD 97.9 9.9E-05 2.1E-09 67.5 10.1 97 158-273 55-157 (197)
159 PLN02353 probable UDP-glucose 97.9 0.0006 1.3E-08 71.0 17.2 146 166-316 2-175 (473)
160 PF03721 UDPG_MGDP_dh_N: UDP-g 97.9 6.4E-05 1.4E-09 68.6 8.9 147 166-316 1-170 (185)
161 COG0190 FolD 5,10-methylene-te 97.9 0.00046 1E-08 66.4 15.0 203 31-328 53-264 (283)
162 TIGR01915 npdG NADPH-dependent 97.9 0.0001 2.2E-09 68.8 10.4 105 166-277 1-106 (219)
163 PRK08229 2-dehydropantoate 2-r 97.9 0.0001 2.2E-09 73.1 10.8 118 166-291 3-125 (341)
164 PRK00045 hemA glutamyl-tRNA re 97.9 3.9E-05 8.4E-10 78.8 7.9 99 162-275 179-283 (423)
165 cd05191 NAD_bind_amino_acid_DH 97.9 0.00011 2.3E-09 58.4 8.7 67 161-272 19-86 (86)
166 PTZ00431 pyrroline carboxylate 97.8 6.7E-05 1.4E-09 72.0 8.8 123 165-320 3-129 (260)
167 COG0345 ProC Pyrroline-5-carbo 97.8 0.00012 2.6E-09 70.4 10.1 100 166-287 2-108 (266)
168 cd05212 NAD_bind_m-THF_DH_Cycl 97.8 0.0002 4.2E-09 62.5 10.5 80 160-275 23-103 (140)
169 TIGR02441 fa_ox_alpha_mit fatt 97.8 0.00026 5.6E-09 77.5 13.8 145 166-321 336-491 (737)
170 TIGR02440 FadJ fatty oxidation 97.8 0.00049 1.1E-08 75.1 15.2 131 166-300 305-445 (699)
171 PRK12921 2-dehydropantoate 2-r 97.8 0.00014 3E-09 70.8 9.9 120 166-292 1-121 (305)
172 PRK07340 ornithine cyclodeamin 97.7 0.00015 3.3E-09 71.2 9.6 97 163-275 123-220 (304)
173 PF02153 PDH: Prephenate dehyd 97.7 0.00022 4.7E-09 68.5 10.3 122 180-322 1-133 (258)
174 PF02423 OCD_Mu_crystall: Orni 97.7 0.00014 3E-09 71.8 9.1 99 166-276 129-228 (313)
175 COG0059 IlvC Ketol-acid reduct 97.7 0.0001 2.2E-09 71.3 7.5 96 162-274 15-110 (338)
176 PRK11730 fadB multifunctional 97.7 0.00064 1.4E-08 74.4 14.6 130 166-300 314-453 (715)
177 COG0362 Gnd 6-phosphogluconate 97.7 0.0014 2.9E-08 65.7 15.3 164 166-350 4-170 (473)
178 PRK06522 2-dehydropantoate 2-r 97.7 0.00028 6E-09 68.6 10.5 120 166-293 1-120 (304)
179 PRK11154 fadJ multifunctional 97.7 0.00069 1.5E-08 74.1 14.6 131 166-300 310-450 (708)
180 TIGR02437 FadB fatty oxidation 97.7 0.00076 1.7E-08 73.7 14.8 130 166-300 314-453 (714)
181 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00028 6.2E-09 64.4 9.6 107 161-277 24-134 (194)
182 PRK00258 aroE shikimate 5-dehy 97.6 0.00022 4.7E-09 69.2 9.0 76 162-247 120-196 (278)
183 PRK14982 acyl-ACP reductase; P 97.6 0.00027 5.9E-09 70.3 9.2 102 159-279 149-253 (340)
184 KOG2380 Prephenate dehydrogena 97.6 0.00017 3.6E-09 70.6 7.4 135 165-322 52-192 (480)
185 PRK08618 ornithine cyclodeamin 97.6 0.00049 1.1E-08 68.3 10.8 97 164-274 126-223 (325)
186 PRK06823 ornithine cyclodeamin 97.6 0.00035 7.6E-09 69.0 9.6 96 165-274 128-224 (315)
187 COG1250 FadB 3-hydroxyacyl-CoA 97.6 0.0017 3.6E-08 63.8 14.1 129 165-300 3-143 (307)
188 PRK06046 alanine dehydrogenase 97.6 0.00048 1E-08 68.4 10.5 95 165-273 129-224 (326)
189 cd01076 NAD_bind_1_Glu_DH NAD( 97.5 0.001 2.3E-08 62.6 11.4 117 161-292 27-154 (227)
190 PRK12557 H(2)-dependent methyl 97.5 0.00044 9.4E-09 69.1 9.1 100 177-287 32-132 (342)
191 TIGR02992 ectoine_eutC ectoine 97.5 0.00086 1.9E-08 66.5 11.0 97 164-273 128-225 (326)
192 COG2423 Predicted ornithine cy 97.4 0.0013 2.8E-08 65.2 11.6 96 165-273 130-226 (330)
193 TIGR00507 aroE shikimate 5-deh 97.4 0.0011 2.4E-08 63.9 10.8 111 163-289 115-229 (270)
194 COG0677 WecC UDP-N-acetyl-D-ma 97.4 0.0029 6.2E-08 63.5 13.8 155 166-332 10-191 (436)
195 PRK07589 ornithine cyclodeamin 97.4 0.00076 1.7E-08 67.4 9.7 96 165-272 129-225 (346)
196 PRK12439 NAD(P)H-dependent gly 97.4 0.0007 1.5E-08 67.6 9.4 105 166-276 8-115 (341)
197 PRK06407 ornithine cyclodeamin 97.4 0.00089 1.9E-08 65.7 9.5 96 165-273 117-213 (301)
198 PTZ00345 glycerol-3-phosphate 97.3 0.0013 2.8E-08 66.2 10.5 111 165-279 11-136 (365)
199 PRK14620 NAD(P)H-dependent gly 97.3 0.0013 2.8E-08 65.0 10.3 104 167-275 2-109 (326)
200 PRK08291 ectoine utilization p 97.3 0.0012 2.7E-08 65.5 10.0 96 164-272 131-227 (330)
201 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0024 5.3E-08 59.7 11.3 114 161-290 19-143 (217)
202 PRK13940 glutamyl-tRNA reducta 97.3 0.0011 2.4E-08 67.9 9.6 96 162-273 178-274 (414)
203 TIGR01470 cysG_Nterm siroheme 97.3 0.00063 1.4E-08 63.1 7.1 95 161-272 5-100 (205)
204 PRK06199 ornithine cyclodeamin 97.3 0.0016 3.5E-08 65.9 10.6 102 165-275 155-262 (379)
205 TIGR01921 DAP-DH diaminopimela 97.3 0.0019 4.2E-08 63.8 10.7 87 166-272 4-91 (324)
206 TIGR03376 glycerol3P_DH glycer 97.3 0.0011 2.5E-08 66.1 9.1 105 167-278 1-122 (342)
207 COG0240 GpsA Glycerol-3-phosph 97.3 0.0016 3.5E-08 64.2 9.8 110 166-283 2-116 (329)
208 PTZ00117 malate dehydrogenase; 97.3 0.0021 4.7E-08 63.6 10.6 131 163-297 3-151 (319)
209 TIGR02354 thiF_fam2 thiamine b 97.2 0.002 4.3E-08 59.6 9.7 107 161-270 17-143 (200)
210 COG0373 HemA Glutamyl-tRNA red 97.2 0.00087 1.9E-08 68.1 7.8 101 162-277 175-279 (414)
211 PRK06249 2-dehydropantoate 2-r 97.2 0.0015 3.2E-08 64.3 8.6 122 166-296 6-129 (313)
212 PRK12549 shikimate 5-dehydroge 97.2 0.0034 7.4E-08 61.1 10.9 78 162-246 124-202 (284)
213 PRK06718 precorrin-2 dehydroge 97.1 0.0018 3.9E-08 59.9 8.3 95 161-272 6-100 (202)
214 COG1712 Predicted dinucleotide 97.1 0.0015 3.2E-08 60.8 7.6 97 167-281 2-100 (255)
215 TIGR01763 MalateDH_bact malate 97.1 0.0026 5.6E-08 62.6 9.8 127 166-297 2-147 (305)
216 PF13241 NAD_binding_7: Putati 97.1 0.00068 1.5E-08 55.8 4.8 89 162-273 4-92 (103)
217 PRK00676 hemA glutamyl-tRNA re 97.1 0.0017 3.7E-08 64.5 8.3 93 162-275 171-264 (338)
218 KOG2653 6-phosphogluconate deh 97.1 0.015 3.2E-07 57.6 14.1 166 166-351 7-175 (487)
219 PRK09310 aroDE bifunctional 3- 97.1 0.0025 5.4E-08 66.5 9.3 75 160-247 327-401 (477)
220 PF01118 Semialdhyde_dh: Semia 97.0 0.0016 3.5E-08 55.0 6.4 96 167-273 1-98 (121)
221 PRK12548 shikimate 5-dehydroge 97.0 0.004 8.6E-08 60.8 10.1 80 162-246 123-209 (289)
222 PRK09414 glutamate dehydrogena 97.0 0.0048 1.1E-07 63.6 10.5 119 161-291 228-361 (445)
223 cd00650 LDH_MDH_like NAD-depen 97.0 0.0021 4.5E-08 61.7 7.3 128 168-299 1-149 (263)
224 PF01408 GFO_IDH_MocA: Oxidore 97.0 0.0041 8.8E-08 51.7 8.2 67 167-246 2-72 (120)
225 PRK13301 putative L-aspartate 97.0 0.0049 1.1E-07 59.2 9.6 103 166-288 3-112 (267)
226 PRK08269 3-hydroxybutyryl-CoA 96.8 0.031 6.7E-07 55.2 14.5 121 176-300 1-140 (314)
227 KOG2304 3-hydroxyacyl-CoA dehy 96.8 0.0014 3E-08 61.0 4.2 135 163-303 9-160 (298)
228 PF01113 DapB_N: Dihydrodipico 96.8 0.0074 1.6E-07 51.3 8.4 110 167-287 2-113 (124)
229 COG1748 LYS9 Saccharopine dehy 96.7 0.0054 1.2E-07 62.1 8.3 102 166-277 2-104 (389)
230 PRK06223 malate dehydrogenase; 96.7 0.011 2.3E-07 58.0 10.2 126 166-295 3-144 (307)
231 COG1064 AdhP Zn-dependent alco 96.7 0.008 1.7E-07 59.7 9.1 92 164-271 166-258 (339)
232 PLN02477 glutamate dehydrogena 96.7 0.013 2.8E-07 59.9 10.9 116 160-291 201-328 (410)
233 PRK13303 L-aspartate dehydroge 96.7 0.0063 1.4E-07 58.6 8.3 108 166-290 2-113 (265)
234 PRK00048 dihydrodipicolinate r 96.6 0.0099 2.1E-07 57.0 9.1 66 166-245 2-69 (257)
235 cd05313 NAD_bind_2_Glu_DH NAD( 96.6 0.014 2.9E-07 56.0 9.9 121 161-291 34-171 (254)
236 smart00859 Semialdhyde_dh Semi 96.6 0.0072 1.6E-07 50.8 7.2 98 167-273 1-100 (122)
237 PRK06719 precorrin-2 dehydroge 96.6 0.0077 1.7E-07 53.5 7.4 72 159-245 7-79 (157)
238 KOG0023 Alcohol dehydrogenase, 96.6 0.0064 1.4E-07 59.5 7.3 38 164-202 181-218 (360)
239 PF03720 UDPG_MGDP_dh_C: UDP-g 96.6 0.013 2.8E-07 48.4 8.2 83 176-271 18-100 (106)
240 PRK01710 murD UDP-N-acetylmura 96.5 0.012 2.6E-07 61.0 9.5 120 162-290 11-143 (458)
241 PTZ00082 L-lactate dehydrogena 96.5 0.012 2.7E-07 58.2 9.1 129 163-295 4-153 (321)
242 PF00185 OTCace: Aspartate/orn 96.5 0.037 8E-07 49.1 10.9 105 164-272 1-120 (158)
243 PF00208 ELFV_dehydrog: Glutam 96.4 0.024 5.2E-07 54.0 10.3 121 162-291 29-164 (244)
244 PRK04207 glyceraldehyde-3-phos 96.4 0.016 3.5E-07 57.9 9.4 80 166-246 2-88 (341)
245 COG1648 CysG Siroheme synthase 96.4 0.0076 1.7E-07 56.1 6.5 96 160-272 7-103 (210)
246 cd05293 LDH_1 A subgroup of L- 96.3 0.023 5E-07 56.1 9.8 124 166-295 4-145 (312)
247 TIGR02356 adenyl_thiF thiazole 96.3 0.015 3.2E-07 53.8 7.9 99 161-261 17-135 (202)
248 TIGR01809 Shik-DH-AROM shikima 96.3 0.035 7.6E-07 54.0 10.9 79 162-247 122-201 (282)
249 PRK14106 murD UDP-N-acetylmura 96.3 0.034 7.4E-07 57.2 11.4 119 162-288 2-132 (450)
250 cd05312 NAD_bind_1_malic_enz N 96.3 0.087 1.9E-06 51.1 13.2 190 123-347 4-224 (279)
251 cd05297 GH4_alpha_glucosidase_ 96.3 0.011 2.4E-07 60.7 7.5 78 166-245 1-83 (423)
252 COG0569 TrkA K+ transport syst 96.2 0.0093 2E-07 56.1 6.1 76 166-249 1-79 (225)
253 PLN02819 lysine-ketoglutarate 96.2 0.015 3.3E-07 65.6 8.7 75 164-246 568-658 (1042)
254 COG1004 Ugd Predicted UDP-gluc 96.2 0.12 2.5E-06 52.3 13.9 160 166-332 1-180 (414)
255 cd01339 LDH-like_MDH L-lactate 96.2 0.02 4.3E-07 56.1 8.4 124 168-295 1-140 (300)
256 PF02254 TrkA_N: TrkA-N domain 96.2 0.031 6.8E-07 46.1 8.5 90 168-270 1-94 (116)
257 PRK14031 glutamate dehydrogena 96.2 0.021 4.6E-07 58.8 8.9 120 160-289 223-359 (444)
258 TIGR02964 xanthine_xdhC xanthi 96.2 0.023 5E-07 54.2 8.6 86 166-289 101-186 (246)
259 cd00762 NAD_bind_malic_enz NAD 96.2 0.096 2.1E-06 50.1 12.6 190 123-346 4-224 (254)
260 PRK12475 thiamine/molybdopteri 96.2 0.017 3.6E-07 57.8 7.8 94 161-260 20-139 (338)
261 PRK14030 glutamate dehydrogena 96.2 0.034 7.5E-07 57.3 10.2 121 160-291 223-361 (445)
262 PRK00066 ldh L-lactate dehydro 96.1 0.016 3.5E-07 57.2 7.6 102 164-273 5-123 (315)
263 PRK11579 putative oxidoreducta 96.0 0.056 1.2E-06 53.8 10.8 67 166-247 5-75 (346)
264 PRK06444 prephenate dehydrogen 96.0 0.014 3.1E-07 53.7 5.9 90 167-320 2-97 (197)
265 PF03435 Saccharop_dh: Sacchar 96.0 0.0091 2E-07 60.4 4.9 74 168-246 1-77 (386)
266 PF13380 CoA_binding_2: CoA bi 95.9 0.034 7.4E-07 46.7 7.6 102 166-294 1-106 (116)
267 TIGR03026 NDP-sugDHase nucleot 95.9 0.044 9.4E-07 56.1 9.9 90 162-271 310-409 (411)
268 PF02558 ApbA: Ketopantoate re 95.9 0.011 2.5E-07 51.2 4.9 121 168-295 1-123 (151)
269 PF00056 Ldh_1_N: lactate/mala 95.9 0.014 3E-07 50.9 5.3 107 166-278 1-122 (141)
270 COG0026 PurK Phosphoribosylami 95.9 0.011 2.3E-07 59.0 4.9 68 165-242 1-68 (375)
271 PRK01713 ornithine carbamoyltr 95.9 0.16 3.5E-06 50.6 13.3 103 162-271 153-274 (334)
272 TIGR00036 dapB dihydrodipicoli 95.9 0.037 8.1E-07 53.3 8.5 74 166-245 2-77 (266)
273 PRK00779 ornithine carbamoyltr 95.8 0.22 4.7E-06 49.1 13.9 75 162-243 149-224 (304)
274 PRK00683 murD UDP-N-acetylmura 95.8 0.022 4.8E-07 58.3 7.0 110 165-289 3-127 (418)
275 PRK12749 quinate/shikimate deh 95.8 0.1 2.2E-06 51.0 11.3 80 162-246 121-206 (288)
276 TIGR03316 ygeW probable carbam 95.8 0.29 6.2E-06 49.3 14.6 75 162-243 167-252 (357)
277 PRK02472 murD UDP-N-acetylmura 95.7 0.077 1.7E-06 54.6 10.8 119 162-289 2-133 (447)
278 PTZ00079 NADP-specific glutama 95.7 0.089 1.9E-06 54.3 10.9 123 160-291 232-370 (454)
279 PRK12862 malic enzyme; Reviewe 95.7 0.21 4.5E-06 55.1 14.3 186 108-344 160-360 (763)
280 PRK07232 bifunctional malic en 95.7 0.23 5E-06 54.5 14.5 166 107-323 151-326 (752)
281 PRK10637 cysG siroheme synthas 95.6 0.035 7.5E-07 57.7 7.8 95 161-271 8-102 (457)
282 PRK05562 precorrin-2 dehydroge 95.6 0.039 8.5E-07 51.8 7.4 96 159-271 19-115 (223)
283 PRK11891 aspartate carbamoyltr 95.6 0.14 3.1E-06 52.6 12.0 75 162-244 238-316 (429)
284 cd05292 LDH_2 A subgroup of L- 95.6 0.042 9.2E-07 54.1 8.0 73 166-246 1-77 (308)
285 PRK05708 2-dehydropantoate 2-r 95.6 0.076 1.7E-06 52.1 9.7 126 166-297 3-128 (305)
286 TIGR00658 orni_carb_tr ornithi 95.5 0.32 7E-06 47.9 13.8 77 163-243 146-223 (304)
287 PLN02353 probable UDP-glucose 95.5 0.096 2.1E-06 54.7 10.5 115 162-283 321-456 (473)
288 PRK12861 malic enzyme; Reviewe 95.5 0.29 6.2E-06 53.8 14.4 186 109-345 157-357 (764)
289 COG0281 SfcA Malic enzyme [Ene 95.4 0.21 4.6E-06 50.8 12.1 190 107-345 165-370 (432)
290 PRK08300 acetaldehyde dehydrog 95.4 0.098 2.1E-06 51.4 9.5 92 165-272 4-101 (302)
291 COG5322 Predicted dehydrogenas 95.4 0.045 9.8E-07 52.4 6.9 105 159-279 161-268 (351)
292 PF13478 XdhC_C: XdhC Rossmann 95.4 0.033 7.1E-07 48.3 5.6 86 168-296 1-86 (136)
293 PRK03515 ornithine carbamoyltr 95.4 0.17 3.7E-06 50.5 11.4 78 162-243 153-232 (336)
294 cd00757 ThiF_MoeB_HesA_family 95.4 0.064 1.4E-06 50.4 8.0 107 161-272 17-143 (228)
295 cd05291 HicDH_like L-2-hydroxy 95.3 0.054 1.2E-06 53.2 7.7 102 166-272 1-117 (306)
296 PRK02255 putrescine carbamoylt 95.3 0.16 3.5E-06 50.8 11.0 74 162-242 151-228 (338)
297 PRK08306 dipicolinate synthase 95.3 0.17 3.6E-06 49.6 11.0 107 164-293 1-117 (296)
298 TIGR01381 E1_like_apg7 E1-like 95.3 0.081 1.8E-06 56.7 9.2 62 119-197 307-370 (664)
299 TIGR00670 asp_carb_tr aspartat 95.3 0.14 3E-06 50.4 10.2 73 162-242 147-222 (301)
300 PRK03369 murD UDP-N-acetylmura 95.3 0.13 2.8E-06 53.9 10.7 114 163-289 10-142 (488)
301 PRK12562 ornithine carbamoyltr 95.3 0.32 7E-06 48.5 12.8 106 162-271 153-274 (334)
302 TIGR01850 argC N-acetyl-gamma- 95.2 0.071 1.5E-06 53.4 8.2 97 166-273 1-100 (346)
303 COG0169 AroE Shikimate 5-dehyd 95.2 0.19 4.2E-06 48.9 10.8 102 161-273 122-227 (283)
304 cd00300 LDH_like L-lactate deh 95.2 0.086 1.9E-06 51.7 8.4 99 168-273 1-116 (300)
305 PRK08644 thiamine biosynthesis 95.1 0.1 2.2E-06 48.6 8.5 98 161-261 24-141 (212)
306 PRK06270 homoserine dehydrogen 95.1 0.13 2.8E-06 51.5 9.6 118 167-291 4-145 (341)
307 PRK09496 trkA potassium transp 95.1 0.13 2.7E-06 53.0 9.9 99 162-271 228-330 (453)
308 PRK09496 trkA potassium transp 95.1 0.11 2.5E-06 53.3 9.6 74 166-248 1-77 (453)
309 COG0771 MurD UDP-N-acetylmuram 95.1 0.11 2.3E-06 53.8 9.2 131 163-303 5-157 (448)
310 TIGR01761 thiaz-red thiazoliny 95.1 0.23 5E-06 49.7 11.3 113 166-294 4-119 (343)
311 PRK02102 ornithine carbamoyltr 95.0 0.42 9E-06 47.7 12.9 78 162-243 152-231 (331)
312 PRK14027 quinate/shikimate deh 95.0 0.19 4.2E-06 48.9 10.3 80 162-246 124-204 (283)
313 PRK09880 L-idonate 5-dehydroge 95.0 0.18 3.9E-06 49.8 10.4 95 164-273 169-267 (343)
314 COG0334 GdhA Glutamate dehydro 95.0 0.12 2.6E-06 52.4 9.0 115 161-289 203-328 (411)
315 TIGR01532 E4PD_g-proteo D-eryt 95.0 0.081 1.8E-06 52.6 7.8 100 167-272 1-120 (325)
316 PRK07688 thiamine/molybdopteri 94.9 0.074 1.6E-06 53.1 7.4 98 161-260 20-139 (339)
317 PLN02520 bifunctional 3-dehydr 94.9 0.098 2.1E-06 55.4 8.5 40 161-201 375-414 (529)
318 COG1004 Ugd Predicted UDP-gluc 94.9 0.14 2.9E-06 51.9 9.0 89 163-270 308-406 (414)
319 TIGR03215 ac_ald_DH_ac acetald 94.9 0.14 2.9E-06 50.0 8.8 71 166-247 2-75 (285)
320 PF03949 Malic_M: Malic enzyme 94.9 0.17 3.8E-06 48.4 9.3 186 123-344 4-222 (255)
321 PRK05690 molybdopterin biosynt 94.8 0.11 2.4E-06 49.4 8.0 107 161-272 28-154 (245)
322 cd01483 E1_enzyme_family Super 94.8 0.15 3.2E-06 44.0 8.1 31 167-198 1-32 (143)
323 PLN02527 aspartate carbamoyltr 94.8 0.23 5E-06 49.0 10.2 74 162-243 148-225 (306)
324 PRK11064 wecC UDP-N-acetyl-D-m 94.8 0.077 1.7E-06 54.5 7.2 70 160-245 315-395 (415)
325 COG3288 PntA NAD/NADP transhyd 94.8 0.019 4.1E-07 55.9 2.5 108 161-272 160-281 (356)
326 PRK10669 putative cation:proto 94.8 0.1 2.2E-06 55.6 8.3 92 166-270 418-513 (558)
327 PLN02342 ornithine carbamoyltr 94.8 0.74 1.6E-05 46.2 13.8 103 162-271 191-306 (348)
328 PF02629 CoA_binding: CoA bind 94.7 0.1 2.3E-06 42.1 6.5 73 166-254 4-79 (96)
329 cd05188 MDR Medium chain reduc 94.7 0.35 7.7E-06 44.9 11.1 98 163-275 133-235 (271)
330 PRK03659 glutathione-regulated 94.7 0.13 2.8E-06 55.4 9.0 96 165-273 400-499 (601)
331 PRK08192 aspartate carbamoyltr 94.7 0.38 8.3E-06 48.0 11.7 75 162-243 156-233 (338)
332 PRK02006 murD UDP-N-acetylmura 94.6 0.11 2.3E-06 54.6 8.0 118 163-290 5-147 (498)
333 PRK01438 murD UDP-N-acetylmura 94.6 0.27 5.9E-06 51.1 11.0 121 160-289 11-147 (480)
334 PRK06019 phosphoribosylaminoim 94.6 0.046 1E-06 55.2 5.0 36 165-201 2-37 (372)
335 PRK06153 hypothetical protein; 94.5 0.16 3.5E-06 51.4 8.5 110 161-276 172-302 (393)
336 PLN02602 lactate dehydrogenase 94.5 0.14 3E-06 51.4 8.1 103 166-273 38-155 (350)
337 PRK08762 molybdopterin biosynt 94.5 0.3 6.5E-06 49.4 10.6 103 161-272 131-257 (376)
338 PRK00436 argC N-acetyl-gamma-g 94.5 0.087 1.9E-06 52.7 6.6 98 166-277 3-104 (343)
339 PRK00141 murD UDP-N-acetylmura 94.5 0.34 7.4E-06 50.5 11.2 117 162-290 12-147 (473)
340 PRK01390 murD UDP-N-acetylmura 94.4 0.23 5.1E-06 51.4 9.7 113 162-289 6-139 (460)
341 PRK14804 ornithine carbamoyltr 94.2 2.8 6E-05 41.5 16.5 75 162-243 150-225 (311)
342 TIGR02355 moeB molybdopterin s 94.2 0.2 4.4E-06 47.6 8.2 98 161-260 20-137 (240)
343 PRK04284 ornithine carbamoyltr 94.2 1.2 2.7E-05 44.3 14.1 106 162-271 152-273 (332)
344 PRK04308 murD UDP-N-acetylmura 94.2 0.44 9.5E-06 49.1 11.4 119 163-290 3-136 (445)
345 PLN02968 Probable N-acetyl-gam 94.2 0.094 2E-06 53.2 6.2 107 163-283 36-145 (381)
346 cd05290 LDH_3 A subgroup of L- 94.2 0.14 3.1E-06 50.4 7.3 72 167-245 1-77 (307)
347 PRK05600 thiamine biosynthesis 94.2 0.2 4.3E-06 50.7 8.5 98 161-260 37-154 (370)
348 cd01492 Aos1_SUMO Ubiquitin ac 94.2 0.21 4.5E-06 46.0 7.9 38 161-199 17-55 (197)
349 PRK03562 glutathione-regulated 94.2 0.21 4.5E-06 54.0 9.1 94 165-271 400-497 (621)
350 PRK05086 malate dehydrogenase; 94.1 0.2 4.3E-06 49.5 8.2 101 166-273 1-119 (312)
351 PRK13814 pyrB aspartate carbam 94.1 1.3 2.9E-05 43.6 14.0 65 163-242 155-223 (310)
352 COG2344 AT-rich DNA-binding pr 94.0 0.055 1.2E-06 49.2 3.6 68 167-247 86-157 (211)
353 PRK00421 murC UDP-N-acetylmura 94.0 0.34 7.3E-06 50.3 9.9 116 162-290 4-133 (461)
354 cd01486 Apg7 Apg7 is an E1-lik 93.9 0.24 5.2E-06 48.6 8.2 100 167-272 1-140 (307)
355 PRK04690 murD UDP-N-acetylmura 93.9 0.13 2.8E-06 53.6 6.8 117 163-289 6-140 (468)
356 COG0673 MviM Predicted dehydro 93.9 0.22 4.7E-06 49.0 8.1 71 166-249 4-80 (342)
357 cd01487 E1_ThiF_like E1_ThiF_l 93.9 0.29 6.3E-06 44.1 8.1 93 167-261 1-112 (174)
358 PRK07806 short chain dehydroge 93.6 0.31 6.8E-06 45.3 8.2 38 162-200 3-41 (248)
359 PRK15182 Vi polysaccharide bio 93.6 0.39 8.5E-06 49.5 9.5 96 160-276 309-416 (425)
360 PRK04148 hypothetical protein; 93.5 0.24 5.2E-06 42.8 6.5 71 164-245 16-86 (134)
361 cd05294 LDH-like_MDH_nadp A la 93.5 0.48 1E-05 46.7 9.5 76 166-245 1-81 (309)
362 COG0057 GapA Glyceraldehyde-3- 93.4 0.17 3.7E-06 50.0 6.2 32 166-197 2-34 (335)
363 PRK07984 enoyl-(acyl carrier p 93.4 0.33 7.2E-06 46.3 8.1 35 163-198 4-41 (262)
364 PRK07231 fabG 3-ketoacyl-(acyl 93.4 0.24 5.1E-06 46.0 6.9 39 162-201 2-41 (251)
365 PF13460 NAD_binding_10: NADH( 93.3 0.12 2.5E-06 45.9 4.6 70 168-249 1-73 (183)
366 PRK00856 pyrB aspartate carbam 93.3 0.69 1.5E-05 45.6 10.3 65 162-243 153-220 (305)
367 TIGR02717 AcCoA-syn-alpha acet 93.2 0.6 1.3E-05 48.5 10.1 111 162-295 4-126 (447)
368 PF00044 Gp_dh_N: Glyceraldehy 93.2 0.12 2.6E-06 45.6 4.3 32 167-198 2-34 (151)
369 PRK15076 alpha-galactosidase; 93.2 0.26 5.6E-06 50.9 7.4 127 166-295 2-169 (431)
370 PTZ00325 malate dehydrogenase; 93.1 0.21 4.5E-06 49.6 6.3 76 162-245 5-85 (321)
371 TIGR01087 murD UDP-N-acetylmur 93.1 0.72 1.6E-05 47.3 10.5 115 167-290 1-128 (433)
372 PRK12937 short chain dehydroge 93.0 0.48 1E-05 43.8 8.5 37 162-199 2-39 (245)
373 PRK05786 fabG 3-ketoacyl-(acyl 93.0 0.93 2E-05 41.7 10.3 39 162-201 2-41 (238)
374 PLN00106 malate dehydrogenase 92.9 0.23 5.1E-06 49.3 6.4 105 164-275 17-138 (323)
375 PLN02272 glyceraldehyde-3-phos 92.9 0.17 3.7E-06 51.8 5.5 36 166-201 86-122 (421)
376 PRK05597 molybdopterin biosynt 92.9 0.33 7.2E-06 48.8 7.5 98 161-260 24-141 (355)
377 PRK06349 homoserine dehydrogen 92.8 0.78 1.7E-05 47.3 10.4 108 166-291 4-124 (426)
378 cd01338 MDH_choloroplast_like 92.8 0.63 1.4E-05 46.2 9.2 111 166-283 3-137 (322)
379 PF04016 DUF364: Domain of unk 92.7 0.49 1.1E-05 41.5 7.5 83 163-271 9-94 (147)
380 PLN02948 phosphoribosylaminoim 92.7 0.29 6.3E-06 52.4 7.2 38 162-200 19-56 (577)
381 PRK06701 short chain dehydroge 92.7 0.35 7.6E-06 46.8 7.2 39 161-200 42-81 (290)
382 PRK12550 shikimate 5-dehydroge 92.7 0.77 1.7E-05 44.5 9.4 36 165-201 122-158 (272)
383 cd08230 glucose_DH Glucose deh 92.6 0.57 1.2E-05 46.5 8.8 96 163-273 171-270 (355)
384 TIGR01772 MDH_euk_gproteo mala 92.6 0.39 8.5E-06 47.5 7.4 103 167-279 1-121 (312)
385 PRK03803 murD UDP-N-acetylmura 92.6 1.1 2.4E-05 46.2 11.1 115 165-289 6-133 (448)
386 cd08239 THR_DH_like L-threonin 92.5 0.65 1.4E-05 45.5 8.9 37 164-201 163-200 (339)
387 PRK04523 N-acetylornithine car 92.4 2 4.4E-05 42.9 12.2 74 163-243 166-251 (335)
388 PRK10206 putative oxidoreducta 92.3 0.35 7.6E-06 48.3 6.9 68 167-247 3-75 (344)
389 COG0078 ArgF Ornithine carbamo 92.1 4.4 9.5E-05 39.7 13.7 104 163-271 151-269 (310)
390 PLN02586 probable cinnamyl alc 92.1 0.92 2E-05 45.3 9.6 96 164-273 183-279 (360)
391 TIGR01161 purK phosphoribosyla 92.1 0.27 5.8E-06 49.1 5.8 33 167-200 1-33 (352)
392 KOG2711 Glycerol-3-phosphate d 92.1 0.85 1.8E-05 45.3 8.8 109 163-275 19-142 (372)
393 PRK06128 oxidoreductase; Provi 92.0 0.55 1.2E-05 45.5 7.6 36 162-198 52-88 (300)
394 PF00899 ThiF: ThiF family; I 91.9 0.18 3.9E-06 43.1 3.7 34 165-199 2-36 (135)
395 PF05368 NmrA: NmrA-like famil 91.9 0.34 7.3E-06 45.0 5.8 72 168-247 1-75 (233)
396 cd08281 liver_ADH_like1 Zinc-d 91.9 0.82 1.8E-05 45.7 8.9 37 164-201 191-228 (371)
397 cd08293 PTGR2 Prostaglandin re 91.8 1 2.2E-05 44.1 9.4 93 165-272 155-254 (345)
398 PRK06392 homoserine dehydrogen 91.8 0.8 1.7E-05 45.6 8.6 121 167-290 2-135 (326)
399 PF03447 NAD_binding_3: Homose 91.8 0.23 5.1E-06 41.2 4.2 98 172-288 1-109 (117)
400 PLN02819 lysine-ketoglutarate 91.7 0.37 8.1E-06 54.8 6.7 106 163-272 201-338 (1042)
401 TIGR03451 mycoS_dep_FDH mycoth 91.6 1.4 3E-05 43.8 10.2 37 164-201 176-213 (358)
402 PRK07200 aspartate/ornithine c 91.5 1.1 2.4E-05 45.7 9.5 78 162-243 184-269 (395)
403 PLN02214 cinnamoyl-CoA reducta 91.4 0.56 1.2E-05 46.5 7.1 83 162-245 7-90 (342)
404 PRK07877 hypothetical protein; 91.2 0.7 1.5E-05 50.7 8.1 98 161-261 103-220 (722)
405 PRK13529 malate dehydrogenase; 91.2 5.2 0.00011 42.6 14.1 207 107-348 261-502 (563)
406 TIGR01202 bchC 2-desacetyl-2-h 91.2 0.77 1.7E-05 44.7 7.7 87 164-272 144-231 (308)
407 PRK04663 murD UDP-N-acetylmura 91.2 2 4.4E-05 44.2 11.2 115 163-289 4-133 (438)
408 COG1893 ApbA Ketopantoate redu 91.1 1.1 2.3E-05 44.3 8.6 150 166-325 1-154 (307)
409 PRK07411 hypothetical protein; 91.1 0.71 1.5E-05 47.1 7.5 101 161-263 34-154 (390)
410 PLN00112 malate dehydrogenase 91.1 1.9 4.2E-05 44.7 10.7 112 166-284 101-236 (444)
411 TIGR01759 MalateDH-SF1 malate 91.1 0.68 1.5E-05 46.0 7.2 74 166-245 4-88 (323)
412 PRK03806 murD UDP-N-acetylmura 91.1 0.7 1.5E-05 47.5 7.6 114 162-288 3-129 (438)
413 cd05283 CAD1 Cinnamyl alcohol 91.0 1.1 2.4E-05 44.0 8.7 95 164-273 169-264 (337)
414 PRK11863 N-acetyl-gamma-glutam 91.0 0.7 1.5E-05 45.7 7.2 77 166-272 3-81 (313)
415 COG0039 Mdh Malate/lactate deh 91.0 0.45 9.8E-06 46.9 5.8 78 166-249 1-84 (313)
416 TIGR02825 B4_12hDH leukotriene 91.0 1.4 3.1E-05 42.8 9.5 94 164-273 138-238 (325)
417 PF00070 Pyr_redox: Pyridine n 90.9 0.43 9.3E-06 36.8 4.6 33 167-200 1-33 (80)
418 cd05298 GH4_GlvA_pagL_like Gly 90.9 1.2 2.6E-05 46.1 9.1 126 166-294 1-165 (437)
419 PRK15425 gapA glyceraldehyde-3 90.8 1.2 2.7E-05 44.3 8.7 32 166-197 3-34 (331)
420 PLN02514 cinnamyl-alcohol dehy 90.8 1.3 2.7E-05 44.2 9.0 96 164-273 180-276 (357)
421 TIGR02853 spore_dpaA dipicolin 90.8 2 4.4E-05 41.8 10.2 105 165-292 1-115 (287)
422 PRK09189 uroporphyrinogen-III 90.8 4 8.6E-05 38.3 11.9 56 16-71 1-57 (240)
423 PLN03209 translocon at the inn 90.7 0.61 1.3E-05 49.7 6.9 38 163-201 78-116 (576)
424 KOG2305 3-hydroxyacyl-CoA dehy 90.7 2 4.3E-05 40.6 9.3 156 166-334 4-171 (313)
425 cd08296 CAD_like Cinnamyl alco 90.7 1.6 3.6E-05 42.6 9.6 37 164-201 163-199 (333)
426 cd05296 GH4_P_beta_glucosidase 90.6 1.9 4.1E-05 44.4 10.2 127 166-295 1-166 (419)
427 PRK07523 gluconate 5-dehydroge 90.5 0.97 2.1E-05 42.3 7.5 39 162-201 7-46 (255)
428 PRK06172 short chain dehydroge 90.5 0.64 1.4E-05 43.4 6.2 39 162-201 4-43 (253)
429 cd08234 threonine_DH_like L-th 90.5 1.2 2.7E-05 43.2 8.5 97 164-275 159-260 (334)
430 PRK10537 voltage-gated potassi 90.4 1.2 2.6E-05 45.5 8.5 90 165-269 240-333 (393)
431 TIGR03201 dearomat_had 6-hydro 90.4 1.6 3.4E-05 43.2 9.2 37 164-201 166-202 (349)
432 PLN02178 cinnamyl-alcohol dehy 90.4 1.2 2.6E-05 44.8 8.6 37 164-201 178-214 (375)
433 TIGR01832 kduD 2-deoxy-D-gluco 90.4 1.5 3.2E-05 40.8 8.5 38 162-200 2-40 (248)
434 TIGR03366 HpnZ_proposed putati 90.4 1.7 3.8E-05 41.5 9.2 37 164-201 120-157 (280)
435 COG1063 Tdh Threonine dehydrog 90.3 2.5 5.4E-05 42.3 10.6 94 165-273 169-270 (350)
436 PF05222 AlaDh_PNT_N: Alanine 90.2 3.9 8.5E-05 35.3 10.4 65 227-301 55-119 (136)
437 COG2185 Sbm Methylmalonyl-CoA 90.1 5.7 0.00012 34.7 11.2 117 13-132 10-138 (143)
438 TIGR01851 argC_other N-acetyl- 90.1 1.2 2.5E-05 44.1 7.8 77 167-272 3-80 (310)
439 PRK07403 glyceraldehyde-3-phos 90.1 1.3 2.8E-05 44.3 8.2 32 166-197 2-35 (337)
440 PLN02427 UDP-apiose/xylose syn 90.0 0.55 1.2E-05 47.2 5.7 41 159-200 8-50 (386)
441 cd08237 ribitol-5-phosphate_DH 90.0 2.2 4.8E-05 42.1 9.9 93 164-272 163-256 (341)
442 PRK05866 short chain dehydroge 90.0 0.89 1.9E-05 44.0 6.9 41 160-201 35-76 (293)
443 PRK08324 short chain dehydroge 90.0 0.89 1.9E-05 49.7 7.6 40 161-201 418-458 (681)
444 PRK13376 pyrB bifunctional asp 89.9 1.7 3.6E-05 46.0 9.2 103 162-272 171-293 (525)
445 PRK07326 short chain dehydroge 89.8 0.82 1.8E-05 42.1 6.3 38 163-201 4-42 (237)
446 CHL00194 ycf39 Ycf39; Provisio 89.8 0.69 1.5E-05 45.2 6.0 70 166-245 1-73 (317)
447 PTZ00317 NADP-dependent malic 89.7 7.4 0.00016 41.4 13.8 204 108-347 264-500 (559)
448 PRK12742 oxidoreductase; Provi 89.7 1.9 4.1E-05 39.6 8.6 36 162-198 3-39 (237)
449 KOG4230 C1-tetrahydrofolate sy 89.7 0.88 1.9E-05 48.0 6.8 136 161-346 158-294 (935)
450 smart00846 Gp_dh_N Glyceraldeh 89.6 0.52 1.1E-05 41.5 4.5 31 167-197 2-33 (149)
451 PRK14573 bifunctional D-alanyl 89.6 1.8 3.8E-05 48.4 9.8 112 166-290 5-130 (809)
452 PRK06114 short chain dehydroge 89.6 0.75 1.6E-05 43.1 6.0 38 162-200 5-43 (254)
453 cd08233 butanediol_DH_like (2R 89.6 2.5 5.5E-05 41.6 10.0 95 164-273 172-273 (351)
454 PRK02705 murD UDP-N-acetylmura 89.5 2.8 6E-05 43.3 10.5 115 167-289 2-134 (459)
455 cd01337 MDH_glyoxysomal_mitoch 89.4 0.93 2E-05 44.8 6.6 99 166-273 1-118 (310)
456 cd05197 GH4_glycoside_hydrolas 89.4 2 4.4E-05 44.3 9.3 127 166-295 1-166 (425)
457 PRK05717 oxidoreductase; Valid 89.3 1.8 4E-05 40.4 8.4 38 162-200 7-45 (255)
458 cd01336 MDH_cytoplasmic_cytoso 89.3 0.72 1.6E-05 45.8 5.7 103 166-272 3-128 (325)
459 TIGR02822 adh_fam_2 zinc-bindi 89.3 1.6 3.4E-05 43.1 8.1 91 164-273 165-255 (329)
460 PRK08265 short chain dehydroge 89.2 2.2 4.8E-05 40.2 8.9 38 162-200 3-41 (261)
461 cd08260 Zn_ADH6 Alcohol dehydr 89.2 2.1 4.6E-05 41.9 9.1 95 164-273 165-265 (345)
462 COG0540 PyrB Aspartate carbamo 89.2 1.2 2.5E-05 43.8 6.9 73 163-243 156-231 (316)
463 PRK08217 fabG 3-ketoacyl-(acyl 89.2 1.4 3E-05 40.7 7.4 39 162-201 2-41 (253)
464 PRK13535 erythrose 4-phosphate 89.1 1.2 2.6E-05 44.5 7.1 31 167-197 3-36 (336)
465 PLN02740 Alcohol dehydrogenase 89.0 2.2 4.8E-05 42.8 9.2 38 163-201 197-235 (381)
466 cd08245 CAD Cinnamyl alcohol d 88.9 2.7 5.8E-05 40.8 9.5 95 164-273 162-257 (330)
467 PRK05442 malate dehydrogenase; 88.9 0.77 1.7E-05 45.6 5.7 109 166-281 5-137 (326)
468 cd01491 Ube1_repeat1 Ubiquitin 88.9 3 6.5E-05 40.8 9.6 107 161-272 15-137 (286)
469 PLN03154 putative allyl alcoho 88.9 3.3 7.1E-05 41.1 10.2 37 164-201 158-195 (348)
470 PRK08955 glyceraldehyde-3-phos 88.8 2.1 4.5E-05 42.8 8.6 31 166-196 3-33 (334)
471 PRK06196 oxidoreductase; Provi 88.7 1.9 4.1E-05 42.0 8.3 39 162-201 23-62 (315)
472 PLN03096 glyceraldehyde-3-phos 88.7 1.7 3.7E-05 44.3 8.0 32 166-197 61-94 (395)
473 cd08301 alcohol_DH_plants Plan 88.7 2.4 5.2E-05 42.2 9.2 37 164-201 187-224 (369)
474 PRK07825 short chain dehydroge 88.6 1.9 4.1E-05 40.8 8.0 39 162-201 2-41 (273)
475 PRK07729 glyceraldehyde-3-phos 88.6 1.9 4.1E-05 43.2 8.2 32 166-197 3-34 (343)
476 PRK08628 short chain dehydroge 88.5 0.96 2.1E-05 42.3 5.8 40 161-201 3-43 (258)
477 PRK12828 short chain dehydroge 88.5 3.3 7.2E-05 37.8 9.3 39 162-201 4-43 (239)
478 COG0677 WecC UDP-N-acetyl-D-ma 88.4 2.3 5E-05 43.2 8.5 94 159-271 316-419 (436)
479 PLN03129 NADP-dependent malic 88.4 8.6 0.00019 41.1 13.2 201 107-348 287-521 (581)
480 cd08295 double_bond_reductase_ 88.4 3.4 7.3E-05 40.5 9.8 37 164-201 151-188 (338)
481 COG4007 Predicted dehydrogenas 88.2 0.99 2.1E-05 43.2 5.5 113 177-304 33-147 (340)
482 PRK08862 short chain dehydroge 88.2 1.9 4.2E-05 40.0 7.6 39 162-201 2-41 (227)
483 PRK08328 hypothetical protein; 88.2 0.64 1.4E-05 43.8 4.4 107 161-273 23-151 (231)
484 cd08269 Zn_ADH9 Alcohol dehydr 88.2 3 6.6E-05 39.8 9.2 37 164-201 129-166 (312)
485 TIGR01757 Malate-DH_plant mala 87.9 3.9 8.5E-05 41.7 10.0 112 166-283 45-179 (387)
486 KOG0399 Glutamate synthase [Am 87.9 2.8 6.1E-05 47.8 9.4 94 152-247 1773-1881(2142)
487 cd08277 liver_alcohol_DH_like 87.8 3.4 7.3E-05 41.2 9.6 38 163-201 183-221 (365)
488 PRK08589 short chain dehydroge 87.8 2.4 5.2E-05 40.3 8.2 36 162-198 3-39 (272)
489 PRK12826 3-ketoacyl-(acyl-carr 87.8 3.1 6.8E-05 38.3 8.7 39 162-201 3-42 (251)
490 TIGR02818 adh_III_F_hyde S-(hy 87.8 2.8 6.1E-05 41.9 9.0 37 164-201 185-222 (368)
491 TIGR01771 L-LDH-NAD L-lactate 87.8 1.2 2.6E-05 43.7 6.1 97 170-273 1-114 (299)
492 TIGR03649 ergot_EASG ergot alk 87.7 0.92 2E-05 43.4 5.2 71 167-248 1-79 (285)
493 PRK06194 hypothetical protein; 87.7 1.6 3.6E-05 41.5 7.0 39 162-201 3-42 (287)
494 PRK07533 enoyl-(acyl carrier p 87.7 2.8 6.1E-05 39.5 8.5 37 162-199 7-46 (258)
495 PRK12747 short chain dehydroge 87.7 2.8 6E-05 39.1 8.4 34 163-197 2-36 (252)
496 PRK07424 bifunctional sterol d 87.7 1.3 2.8E-05 45.4 6.5 40 161-201 174-214 (406)
497 PRK06841 short chain dehydroge 87.6 2.9 6.2E-05 38.9 8.5 38 162-200 12-50 (255)
498 PRK15057 UDP-glucose 6-dehydro 87.6 1.4 3E-05 44.9 6.7 65 163-245 294-368 (388)
499 PRK10309 galactitol-1-phosphat 87.6 4.4 9.5E-05 39.8 10.1 37 164-201 160-197 (347)
500 PRK08664 aspartate-semialdehyd 87.6 2.6 5.7E-05 42.2 8.6 99 166-272 4-107 (349)
No 1
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.8e-79 Score=614.33 Aligned_cols=385 Identities=92% Similarity=1.397 Sum_probs=332.6
Q ss_pred CCCceeEEEeCCCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHH
Q 016162 1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA 80 (394)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~ 80 (394)
|+|+++++|-||+.|++|+++.+++++...+.|++.+++++.........+++++.+.+.+++|+++++..+.+++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~ 80 (386)
T PLN02306 1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS 80 (386)
T ss_pred CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence 89999999999999999999999876434677877667776433222235788998887545999998877789999999
Q ss_pred HhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc
Q 016162 81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (394)
Q Consensus 81 ~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g 160 (394)
+++++++|+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+....|
T Consensus 81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g 160 (386)
T PLN02306 81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG 160 (386)
T ss_pred hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence 99976679999999999999999999999999999999999999999999999999999999999999998886544567
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+|+||||||||+|+||+.+|++++++|||+|++|||+.....+.+...|+..+...+.....+....+++|++++||+|
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 89999999999999999999999634999999999998753322211122211111111111122235899999999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCC
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPH 320 (394)
++|+|+|++|+++||++.|++||+|++|||+|||++|||+||++||++|++.||+||||++||+++++||++|||++|||
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH 320 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH 320 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998788999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhh
Q 016162 321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFK 385 (394)
Q Consensus 321 ia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (394)
+||.|.++++++...+++|+.+|++|+++.|.||.++|++.+++.++..+|+|.+++.+|.-+++
T Consensus 321 iag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (386)
T PLN02306 321 IASASKWTREGMATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALGLPVSK 385 (386)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhCCcccC
Confidence 99999999999999999999999999999999985568988888999999999999999876554
No 2
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-74 Score=544.57 Aligned_cols=340 Identities=32% Similarity=0.448 Sum_probs=309.7
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccC
Q 016162 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (394)
Q Consensus 17 ~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G 96 (394)
+||+++++... .++.|++.|.++++.. ..+.||+.+.+++ +|++++++.+++++++|++... ++|+|+++|+|
T Consensus 8 ~il~~e~~~~~-~~~~l~~~g~~v~~~~----~~~~eel~~~i~~-~~aviVrs~tkvtadvl~aa~~-~lkvVgrag~G 80 (406)
T KOG0068|consen 8 KILVAESLDQA-CIEILKDNGYQVEFKK----NLSLEELIEKIKD-CDALIVRSKTKVTADVLEAAAG-GLKVVGRAGIG 80 (406)
T ss_pred eEEEecccchH-HHHHHHhcCceEEEec----cCCHHHHHHHhcc-CCEEEEEeCCeecHHHHHhhcC-CeEEEEecccC
Confidence 69999999874 6899999998887543 3478899999985 9999999999999999995332 45999999999
Q ss_pred ccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChH
Q 016162 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (394)
Q Consensus 97 ~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I 176 (394)
+||+|+++|+++||.|.|+|.+|+.++||++++++++++|+++++...+++|+ |.+..+.|.+|+|||+||+|+|+|
T Consensus 81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~---wnr~~~~G~el~GKTLgvlG~GrI 157 (406)
T KOG0068|consen 81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGK---WNRVKYLGWELRGKTLGVLGLGRI 157 (406)
T ss_pred ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCc---eeecceeeeEEeccEEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999998 667788999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (394)
Q Consensus 177 G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~ 256 (394)
|+++|+++ +++||+|++||+.......+ ..|. ...+++|+++.||||++|+|+||+|.+++|+
T Consensus 158 GseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a~gv------q~vsl~Eil~~ADFitlH~PLtP~T~~lin~ 220 (406)
T KOG0068|consen 158 GSEVAVRA-KAMGMHVIGYDPITPMALAE----------AFGV------QLVSLEEILPKADFITLHVPLTPSTEKLLND 220 (406)
T ss_pred hHHHHHHH-HhcCceEEeecCCCchHHHH----------hccc------eeeeHHHHHhhcCEEEEccCCCcchhhccCH
Confidence 99999996 89999999999987653221 1121 2469999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC---CCccccCCceEEcCCCCCCcHHHHHHHH
Q 016162 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASKWTREGMA 333 (394)
Q Consensus 257 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~---~~~L~~~~nvilTPHia~~t~~~~~~~~ 333 (394)
+.|++||+|..+||+|||++|||.||++||++|+++|||+|||+.||.. ++.|.++|||++|||+|++|.|++.+++
T Consensus 221 ~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~ia 300 (406)
T KOG0068|consen 221 ETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIA 300 (406)
T ss_pred HHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 4689999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhhcc
Q 016162 334 TLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLS 387 (394)
Q Consensus 334 ~~~~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (394)
..+++++.+|++| ...++|| . |.+.. +.+++.+||+.+++++|+++.|+.
T Consensus 301 ievaea~~~~~~~-~~~g~Vn-a-~~v~~-~~l~~~~~~~~~a~~l~r~~~~~~ 350 (406)
T KOG0068|consen 301 IEVAEAVSDYING-NSAGSVN-A-PEVAL-ESLTELKPNIVLAEKLGRLVPGVL 350 (406)
T ss_pred HHHHHHHHHHhcc-Cccceec-h-hhhhh-hhhhccCchhHHHHHHhhhhHHHh
Confidence 9999999999999 7788997 4 77765 588999999999999999999984
No 3
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=8.5e-72 Score=581.33 Aligned_cols=347 Identities=34% Similarity=0.481 Sum_probs=309.4
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccC
Q 016162 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (394)
Q Consensus 17 ~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G 96 (394)
||++++++++ ...+.|++.++++... + ..+++++.+.+.+ +|++++++.+++++++++++|+| |+|+++|+|
T Consensus 1 ~vli~~~~~~-~~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G 72 (525)
T TIGR01327 1 KVLIADPISP-DGIDILEDVGVEVDVQ--T--GLSREELLEIIPD-YDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG 72 (525)
T ss_pred CEEEeCCCCH-HHHHHHHhcCcEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence 4788888876 3567777766666532 1 2367888888874 99999988788999999999988 999999999
Q ss_pred ccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChH
Q 016162 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (394)
Q Consensus 97 ~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I 176 (394)
+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|.|.. ..+.|.+|+||||||||+|+|
T Consensus 73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~~~~g~~l~gktvgIiG~G~I 149 (525)
T TIGR01327 73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDR---KAFMGTELYGKTLGVIGLGRI 149 (525)
T ss_pred cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccc---cccCccccCCCEEEEECCCHH
Confidence 99999999999999999999999999999999999999999999999999998643 335678999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (394)
Q Consensus 177 G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~ 256 (394)
|+++|+++ ++|||+|++|||+....... ..+ .....+++|++++||+|++|+|+|++|+++||+
T Consensus 150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~g-----~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 150 GSIVAKRA-KAFGMKVLAYDPYISPERAE----------QLG-----VELVDDLDELLARADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred HHHHHHHH-HhCCCEEEEECCCCChhHHH----------hcC-----CEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence 99999997 89999999999974322110 011 122358999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHH
Q 016162 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLA 336 (394)
Q Consensus 257 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~ 336 (394)
+.|++||+|++|||+|||++||++||++||++|+++||+||||++||++++|||++|||++|||+|+.|.++++++...+
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~ 293 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQV 293 (525)
T ss_pred HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhhccccCCCC
Q 016162 337 ALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSAASPHR 393 (394)
Q Consensus 337 ~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (394)
++|+.+|++|+++.|.|| . |.++. +.++.++||+.|++++|+++.||....|++
T Consensus 294 ~~ni~~~~~g~~~~~~vn-~-~~~~~-~~~~~~~~~~~la~riG~~a~ql~~~~~~~ 347 (525)
T TIGR01327 294 AEQVLDALKGLPVPNAVN-A-PGIDA-DVMEKLKPYLDLAEKLGKLAGQLLDGAVQS 347 (525)
T ss_pred HHHHHHHHcCCCCCceee-C-CCCCc-hhhhhhhhHHHHHHHHHHHHHHHcCCCceE
Confidence 999999999999999997 4 88866 488899999999999999999998887764
No 4
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-71 Score=546.01 Aligned_cols=311 Identities=37% Similarity=0.515 Sum_probs=276.1
Q ss_pred CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (394)
Q Consensus 14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~ 93 (394)
++++++++.++.+.. .+.+... .++++... ...+.+++.+.+.+ +|++++ +.+++++++++.+|+| |+|++.
T Consensus 2 ~~~~vl~~~~~~~~~-~~~l~~~-~~~~~~~~--~~~~~~~l~~~~~~-~d~~~~-~~~~v~~~~l~~~~~L--k~I~~~ 73 (324)
T COG0111 2 MMIKVLVTDPLAPDA-LEELLAA-YDVEVPDG--PDLDEEELLEALAD-ADALIV-SVTPVTEEVLAAAPNL--KAIGRA 73 (324)
T ss_pred CcceeeccCccCHHH-HHHHHhc-cccccccc--cccchHHHHhhccc-CcEEEE-ecCCCCHHHHhhCCCc--eEEEEc
Confidence 578899999998864 4555444 33333222 23466778888874 999998 7889999999999988 999999
Q ss_pred ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (394)
Q Consensus 94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl 173 (394)
|+|+||||+++++++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|.|+ +..+.|.+|+||||||||+
T Consensus 74 g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~---~~~~~g~el~gkTvGIiG~ 150 (324)
T COG0111 74 GAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWD---RKAFRGTELAGKTVGIIGL 150 (324)
T ss_pred cccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcc---ccccccccccCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999965 3556788999999999999
Q ss_pred ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (394)
Q Consensus 174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l 253 (394)
|+||+.+|+++ ++|||+|++|||+.....+. . .+.....++++++++||+|++|+|+|++|+||
T Consensus 151 G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~-------------~--~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~ 214 (324)
T COG0111 151 GRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG-------------V--DGVVGVDSLDELLAEADILTLHLPLTPETRGL 214 (324)
T ss_pred CHHHHHHHHHH-HhCCCeEEEECCCCchhhhc-------------c--ccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence 99999999996 89999999999976543211 1 11234578999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHH
Q 016162 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGM 332 (394)
Q Consensus 254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~ 332 (394)
||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+||+|.|+++++
T Consensus 215 i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~ 294 (324)
T COG0111 215 INAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERV 294 (324)
T ss_pred cCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCC
Q 016162 333 ATLAALNVLGKIKGYPIWG 351 (394)
Q Consensus 333 ~~~~~~ni~~~l~g~~~~~ 351 (394)
..++++|+.+|++|+++.|
T Consensus 295 ~~~~~~~i~~~l~g~~~~~ 313 (324)
T COG0111 295 AEIVAENIVRYLAGGPVVN 313 (324)
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999776
No 5
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.6e-70 Score=539.42 Aligned_cols=317 Identities=33% Similarity=0.490 Sum_probs=276.4
Q ss_pred CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (394)
Q Consensus 14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~ 93 (394)
+++||+++++++++ ..+.|++. +++.... .....+.+++.+.+. ++|+++++. .++++++++++|+| |+|++.
T Consensus 1 ~~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~~~~~~~-~ad~li~~~-~~~~~~~l~~~p~L--k~I~~~ 73 (323)
T PRK15409 1 MKPSVILYKALPDD-LLQRLEEH-FTVTQVA-NLSPETVEQHAAAFA-EAEGLLGSG-EKVDAALLEKMPKL--RAASTI 73 (323)
T ss_pred CCceEEEeCCCCHH-HHHHHHhc-CcEEEcC-CCCCCCHHHHHHHhc-CCeEEEEcC-CCCCHHHHhhCCCC--eEEEEC
Confidence 45789999988753 56667653 4554332 112236678888887 499998764 47999999999998 999999
Q ss_pred ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (394)
Q Consensus 94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl 173 (394)
|+|+||||+++|+++||.|+|+|++++++||||++++||+++|++..+++.+++|.|..+......|.+|+|||+||||+
T Consensus 74 g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~ 153 (323)
T PRK15409 74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM 153 (323)
T ss_pred ceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999864432233578999999999999
Q ss_pred ChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhh
Q 016162 174 GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (394)
Q Consensus 174 G~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~ 252 (394)
|+||+.+|+++ + +|||+|++|||+....... . .+ . ...++++++++||+|++|+|+|++|++
T Consensus 154 G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---~-------~~-----~-~~~~l~ell~~sDvv~lh~plt~~T~~ 216 (323)
T PRK15409 154 GRIGMALAQRA-HFGFNMPILYNARRHHKEAEE---R-------FN-----A-RYCDLDTLLQESDFVCIILPLTDETHH 216 (323)
T ss_pred cHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---h-------cC-----c-EecCHHHHHHhCCEEEEeCCCChHHhh
Confidence 99999999996 7 9999999999875332110 0 01 1 235999999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCceEEcCCCCCCcHHHHHH
Q 016162 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG 331 (394)
Q Consensus 253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~~~~ 331 (394)
+||++.|++||||++|||+|||++||++||++||++|+++||+||||++||++ ++|||++|||++|||+||.|.+++.+
T Consensus 217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~ 296 (323)
T PRK15409 217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN 296 (323)
T ss_pred ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986 46899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCC
Q 016162 332 MATLAALNVLGKIKGYPIWGNPN 354 (394)
Q Consensus 332 ~~~~~~~ni~~~l~g~~~~~~v~ 354 (394)
+...+++||.+|++|+++.+.||
T Consensus 297 ~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 297 MAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred HHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999988886
No 6
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-71 Score=575.13 Aligned_cols=347 Identities=32% Similarity=0.479 Sum_probs=308.3
Q ss_pred eEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcc
Q 016162 16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (394)
Q Consensus 16 ~~vlv~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g 94 (394)
|||++++++++. ..+.|++. ++++.. .+ ..+++++.+.+.+ +|++++++.+++++++++++|+| |+|++.|
T Consensus 1 m~ili~~~~~~~-~~~~l~~~~~~~v~~--~~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~ 72 (526)
T PRK13581 1 MKVLVSDPISPA-GLEILKDAPGVEVDV--KT--GLDKEELLEIIGD-YDALIVRSATKVTAEVLEAAKNL--KVIGRAG 72 (526)
T ss_pred CeEEEeCCCCHH-HHHHHhccCCeEEEe--CC--CCCHHHHHHHhcC-CCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence 468888888763 46777665 455542 22 2367888888874 99999988788999999999988 9999999
Q ss_pred cCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 016162 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG 174 (394)
Q Consensus 95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG 174 (394)
+|+||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.. ..+.|.+|+||||||||+|
T Consensus 73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~---~~~~g~~l~gktvgIiG~G 149 (526)
T PRK13581 73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWER---KKFMGVELYGKTLGIIGLG 149 (526)
T ss_pred cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCc---cCccccccCCCEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999999999653 2346789999999999999
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcc
Q 016162 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254 (394)
Q Consensus 175 ~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li 254 (394)
+||+.+|+++ ++|||+|++|||+....... ..+ +. ..+++|++++||+|++|+|+|++|+++|
T Consensus 150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~g-----~~-~~~l~ell~~aDiV~l~lP~t~~t~~li 212 (526)
T PRK13581 150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA----------QLG-----VE-LVSLDELLARADFITLHTPLTPETRGLI 212 (526)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCCChhHHH----------hcC-----CE-EEcHHHHHhhCCEEEEccCCChHhhcCc
Confidence 9999999997 89999999999975332110 011 12 2389999999999999999999999999
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHH
Q 016162 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334 (394)
Q Consensus 255 ~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~ 334 (394)
+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++++|||++|||++|||+|+.|.++++++..
T Consensus 213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~ 292 (526)
T PRK13581 213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAI 292 (526)
T ss_pred CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhhccccCCCC
Q 016162 335 LAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSAASPHR 393 (394)
Q Consensus 335 ~~~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (394)
.+++|+.+|++|+++.|.|| + |.+.+ +.++.++||+.+++++|+++.||..+.|++
T Consensus 293 ~~~~ni~~~~~g~~~~~~vn-~-~~~~~-~~~~~~~~~~~la~riG~~a~ql~~~~~~~ 348 (526)
T PRK13581 293 QVAEQVIDALRGGPVPNAVN-L-PSITA-EEAEKLKPYLDLAEKLGSLAAQLADGPIKS 348 (526)
T ss_pred HHHHHHHHHHcCCCcCceee-C-CCCch-hhhHHhHHHHHHHHHHHHHHHHHcCCCceE
Confidence 99999999999999999997 5 88865 589999999999999999999998887764
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=6e-70 Score=533.60 Aligned_cols=317 Identities=39% Similarity=0.535 Sum_probs=278.4
Q ss_pred CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (394)
Q Consensus 14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~ 93 (394)
+|+.++++.+++++ ..+.+.+. +++..........+ ++.+... ++|++++...+.++.++++++|+| |+|+..
T Consensus 1 mk~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~ 73 (324)
T COG1052 1 MKIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLTPDT--ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATR 73 (324)
T ss_pred CCcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCccch--HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEe
Confidence 35668888888874 46666554 67766554322222 5666666 599999988889999999999988 999999
Q ss_pred ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCC-CCcccccccCCCeEEEEe
Q 016162 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL-PNLFVGNLLKGQTVGVIG 172 (394)
Q Consensus 94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~-~~~~~g~~l~gktvGIIG 172 (394)
|+||||||+++|+++||.|+|+|++++++||||++++||++.|++.++++++|+|.|..|. .....|.+++|||+||||
T Consensus 74 ~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG 153 (324)
T COG1052 74 SAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG 153 (324)
T ss_pred ccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999987652 333568899999999999
Q ss_pred cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhh
Q 016162 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (394)
Q Consensus 173 lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~ 252 (394)
+|+||+++|+++ ++|||+|++|||++.+..++. ..+ .+.+++|++++||+|++|||+|++|+|
T Consensus 154 ~GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~~---------------~~~-~y~~l~ell~~sDii~l~~Plt~~T~h 216 (324)
T COG1052 154 LGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEKE---------------LGA-RYVDLDELLAESDIISLHCPLTPETRH 216 (324)
T ss_pred CCHHHHHHHHHH-hcCCCEEEEECCCCChHHHhh---------------cCc-eeccHHHHHHhCCEEEEeCCCChHHhh
Confidence 999999999997 799999999999875322210 011 234699999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCc---eEEcCCCCCCcHHH
Q 016162 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASKWT 328 (394)
Q Consensus 253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~n---vilTPHia~~t~~~ 328 (394)
+||++.|++||+|++|||+|||++|||+||++||++|+++|||||||+.||.+ ++||++++| |++|||+|+.|.++
T Consensus 217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea 296 (324)
T COG1052 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEA 296 (324)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999985 678887777 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162 329 REGMATLAALNVLGKIKGYPIWGNPN 354 (394)
Q Consensus 329 ~~~~~~~~~~ni~~~l~g~~~~~~v~ 354 (394)
+.+|...+++|+.+|++|+...+.||
T Consensus 297 ~~~m~~~~~~nl~~~~~g~~~~~~v~ 322 (324)
T COG1052 297 RKAMAELALENLEAFFDGGVPPNEVN 322 (324)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999998886
No 8
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=4e-68 Score=525.21 Aligned_cols=318 Identities=43% Similarity=0.648 Sum_probs=278.6
Q ss_pred CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (394)
Q Consensus 14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~ 93 (394)
+++||+++.++++ ...+.|++. +++.... .....+.+++.+.+.+ +|+++++..+++++++++++|+| |+|++.
T Consensus 1 ~~~kil~~~~~~~-~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~ 74 (333)
T PRK13243 1 MKPKVFITREIPE-NGIEMLEEH-FEVEVWE-DEREIPREVLLEKVRD-VDALVTMLSERIDCEVFEAAPRL--RIVANY 74 (333)
T ss_pred CCceEEEECCCCH-HHHHHHhcC-ceEEEec-CCCCCCHHHHHHHhCC-CcEEEEeCCCCCCHHHHhhCCCC--eEEEec
Confidence 4578999888765 345667654 4554332 2223467888888874 99999877678999999999988 999999
Q ss_pred ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCC----CCCCcccccccCCCeEE
Q 016162 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVG 169 (394)
Q Consensus 94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~----w~~~~~~g~~l~gktvG 169 (394)
|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.. |....+.|.+|+|||||
T Consensus 75 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvg 154 (333)
T PRK13243 75 AVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIG 154 (333)
T ss_pred CccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999863 22222357899999999
Q ss_pred EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (394)
Q Consensus 170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~ 249 (394)
|||+|+||+.+|+++ ++|||+|++|||+....... . .+ . ...++++++++||+|++|+|+|++
T Consensus 155 IiG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~-------~~-----~-~~~~l~ell~~aDiV~l~lP~t~~ 217 (333)
T PRK13243 155 IIGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK---E-------LG-----A-EYRPLEELLRESDFVSLHVPLTKE 217 (333)
T ss_pred EECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH---H-------cC-----C-EecCHHHHHhhCCEEEEeCCCChH
Confidence 999999999999997 89999999999986432110 0 01 1 235899999999999999999999
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHH
Q 016162 250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329 (394)
Q Consensus 250 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~ 329 (394)
|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+||+|.+++
T Consensus 218 T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~ 297 (333)
T PRK13243 218 TYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAR 297 (333)
T ss_pred HhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162 330 EGMATLAALNVLGKIKGYPIWGNPN 354 (394)
Q Consensus 330 ~~~~~~~~~ni~~~l~g~~~~~~v~ 354 (394)
.++...+++|+.+|++|+++.|.||
T Consensus 298 ~~~~~~~~~ni~~~~~g~~~~~~v~ 322 (333)
T PRK13243 298 EGMAELVAENLIAFKRGEVPPTLVN 322 (333)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccC
Confidence 9999999999999999999999886
No 9
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=6e-68 Score=536.49 Aligned_cols=316 Identities=28% Similarity=0.377 Sum_probs=280.8
Q ss_pred CCCCceEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcE
Q 016162 11 NPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89 (394)
Q Consensus 11 ~~~~~~~vlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~ 89 (394)
-|++++||++++++++. ..+.|++.++ ++.... ...+++++.+.+.+ +|++++++.+.+++++++++|+| |+
T Consensus 6 ~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L--k~ 78 (409)
T PRK11790 6 LPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIKD-AHFIGIRSRTQLTEEVLAAAEKL--VA 78 (409)
T ss_pred CCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcCC-CCEEEEeCCCCCCHHHHhhCCCC--eE
Confidence 35577899999888763 4677777666 665432 13477888888874 99998887778999999999988 99
Q ss_pred EEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016162 90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169 (394)
Q Consensus 90 I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG 169 (394)
|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.. ..+.|.+|+|||+|
T Consensus 79 I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~---~~~~~~~L~gktvG 155 (409)
T PRK11790 79 IGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNK---SAAGSFEVRGKTLG 155 (409)
T ss_pred EEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccc---cccCcccCCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999653 22457899999999
Q ss_pred EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (394)
Q Consensus 170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~ 249 (394)
|||+|+||+.+|+++ ++|||+|++|||+..... + ......+++|++++||+|++|+|+|++
T Consensus 156 IiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~--------------~----~~~~~~~l~ell~~sDiVslh~Plt~~ 216 (409)
T PRK11790 156 IVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL--------------G----NARQVGSLEELLAQSDVVSLHVPETPS 216 (409)
T ss_pred EECCCHHHHHHHHHH-HHCCCEEEEECCCccccc--------------C----CceecCCHHHHHhhCCEEEEcCCCChH
Confidence 999999999999996 899999999998643210 0 012245899999999999999999999
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-----CccccCCceEEcCCCCCC
Q 016162 250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIASA 324 (394)
Q Consensus 250 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-----~~L~~~~nvilTPHia~~ 324 (394)
|+++||++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++. +|||++|||++|||+||+
T Consensus 217 T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~ 296 (409)
T PRK11790 217 TKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGS 296 (409)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCC
Confidence 999999999999999999999999999999999999999999999999999999864 489999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 016162 325 SKWTREGMATLAALNVLGKIKGYPIWGNPNQ 355 (394)
Q Consensus 325 t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~~ 355 (394)
|.++++++...+++|+.+|++|+++.+.||.
T Consensus 297 t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~ 327 (409)
T PRK11790 297 TQEAQENIGLEVAGKLVKYSDNGSTLSAVNF 327 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCcceec
Confidence 9999999999999999999999999999983
No 10
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-67 Score=518.89 Aligned_cols=290 Identities=29% Similarity=0.361 Sum_probs=256.7
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCC
Q 016162 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109 (394)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~g 109 (394)
.+.|++...++.... ..+++++.+.+.+ +|+++++ .+++++++++++|+| |+|++.|+|+|+||+++|.++|
T Consensus 18 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g 89 (317)
T PRK06487 18 LSPLEQAFDELQLHD----ATTPEQVAERLRG-AQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG 89 (317)
T ss_pred hhHHHhhCCeEEEec----CCCHHHHHHHhCC-CeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence 455655444554432 2356888888874 9988876 457999999999988 9999999999999999999999
Q ss_pred ceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCC---cccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (394)
Q Consensus 110 I~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~la~ 186 (394)
|.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|... .+.+++|+|||+||||+|+||+.+|+++ +
T Consensus 90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~ 168 (317)
T PRK06487 90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E 168 (317)
T ss_pred CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence 99999999999999999999999999999999999999998654321 1245789999999999999999999997 8
Q ss_pred cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCc
Q 016162 187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266 (394)
Q Consensus 187 ~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~ga 266 (394)
+|||+|++||++.... . ....++++++++||+|++|+|+|++|+|+||++.|++||+|+
T Consensus 169 ~fgm~V~~~~~~~~~~---------------~------~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga 227 (317)
T PRK06487 169 AFGMRVLIGQLPGRPA---------------R------PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227 (317)
T ss_pred hCCCEEEEECCCCCcc---------------c------ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence 9999999999864210 0 013589999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-Ccccc--CCceEEcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 016162 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASKWTREGMATLAALNVLGK 343 (394)
Q Consensus 267 ilIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~--~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~ 343 (394)
+|||+|||++||++||++||++|+++||+||||++||++. +|||. +|||++|||+||.|.++++++...+++|+.+|
T Consensus 228 ~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~ 307 (317)
T PRK06487 228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAF 307 (317)
T ss_pred EEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 68995 89999999999999999999999999999999
Q ss_pred HcCCCC
Q 016162 344 IKGYPI 349 (394)
Q Consensus 344 l~g~~~ 349 (394)
++|+|+
T Consensus 308 ~~g~~~ 313 (317)
T PRK06487 308 FAGKPL 313 (317)
T ss_pred HcCCCC
Confidence 999876
No 11
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-67 Score=516.73 Aligned_cols=301 Identities=29% Similarity=0.429 Sum_probs=259.2
Q ss_pred EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcc
Q 016162 17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (394)
Q Consensus 17 ~vlv~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g 94 (394)
||++.++ +++ ...+.|++.+ ++.... . .+++++.+.+.+ +|+++++ .+++++++++++|+| |+|++.|
T Consensus 2 ki~~~~~~~~~~-~~~~~l~~~~-~~~~~~--~--~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~ 71 (311)
T PRK08410 2 KIVILDAKTLGD-KDLSVFEEFG-DFQIYP--T--TSPEEVIERIKD-ANIIITN-KVVIDKEVLSQLPNL--KLICITA 71 (311)
T ss_pred eEEEEecCCCCh-hhHHHHhhCc-eEEEeC--C--CCHHHHHHHhCC-CCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence 4555443 443 3456676643 554332 1 256788888874 9999876 567999999999988 9999999
Q ss_pred cCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCc---ccccccCCCeEEEE
Q 016162 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI 171 (394)
Q Consensus 95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~---~~g~~l~gktvGII 171 (394)
+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+.... ..+++|+|||+|||
T Consensus 72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi 151 (311)
T PRK08410 72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII 151 (311)
T ss_pred cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999976432110 12579999999999
Q ss_pred ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhh
Q 016162 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (394)
Q Consensus 172 GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~ 251 (394)
|+|+||+.+|+++ ++|||+|++|||+..... ..+ ...++++++++||+|++|+|+|++|+
T Consensus 152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~T~ 211 (311)
T PRK08410 152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEKTK 211 (311)
T ss_pred CCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCchhh
Confidence 9999999999996 899999999999743210 011 24689999999999999999999999
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccC---CceEEcCCCCCCcHH
Q 016162 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM---KNAIVVPHIASASKW 327 (394)
Q Consensus 252 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~---~nvilTPHia~~t~~ 327 (394)
++||++.|++||||++|||+|||++||++||++||++|+|+ |+||||++||++. +|||++ ||||+|||+||+|.+
T Consensus 212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e 290 (311)
T PRK08410 212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE 290 (311)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999 9999999999864 689986 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCC
Q 016162 328 TREGMATLAALNVLGKIKGYP 348 (394)
Q Consensus 328 ~~~~~~~~~~~ni~~~l~g~~ 348 (394)
++.++...+++|+.+|++|+.
T Consensus 291 ~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 291 ARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999863
No 12
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-66 Score=508.36 Aligned_cols=274 Identities=30% Similarity=0.384 Sum_probs=247.1
Q ss_pred CCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHH
Q 016162 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS 129 (394)
Q Consensus 50 ~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~ 129 (394)
.+++|+.+.+.+ +|++++. .+++++++++++|+| |+|++.|+|+|+||+++|.++||.|+|+||+++.+||||+++
T Consensus 33 ~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~ 108 (314)
T PRK06932 33 TSAEQTIERAKD-ADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG 108 (314)
T ss_pred CChHHHHHHhCC-CcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence 367888888874 9988774 557999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHcCccCCCCC---CcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH
Q 016162 130 LSLAAARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (394)
Q Consensus 130 ~~L~~~R~~~~~~~~~~~g~~~~w~~---~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~ 206 (394)
+||+++|++..+++.+++|.|..+.. ..+.+++|+|||+||||+|+||+.+|+++ ++|||+|++||++.....
T Consensus 109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~~--- 184 (314)
T PRK06932 109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASVC--- 184 (314)
T ss_pred HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCccccc---
Confidence 99999999999999999999864321 11245789999999999999999999996 899999999998642100
Q ss_pred HHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (394)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 286 (394)
. ..+.+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||
T Consensus 185 --------------~---~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL 247 (314)
T PRK06932 185 --------------R---EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL 247 (314)
T ss_pred --------------c---cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence 0 02358999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceEEeeccCCCCCC-CCccc----cCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 016162 287 KQNPMFRVGLDVFEDEPYM-KPGLS----EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP 348 (394)
Q Consensus 287 ~~g~l~gaalDV~~~EP~~-~~~L~----~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g~~ 348 (394)
++|+++||+||||++||++ ++||| ++|||++|||+||.|.++++++...+++|+.+|++|+.
T Consensus 248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999986 46898 58999999999999999999999999999999998863
No 13
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-64 Score=505.51 Aligned_cols=301 Identities=23% Similarity=0.254 Sum_probs=264.1
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhcccCCcEEEEcccCccccchhHHhh
Q 016162 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107 (394)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~--~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~ 107 (394)
.+.|++.++++.+.... ..+.+++.+.+.+ +|++|+.. +.++++++++++|+| |+|++.|+|+||||+++|++
T Consensus 68 ~~~l~~~g~~~v~~~~~--~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~~ 142 (386)
T PLN03139 68 RDWLESQGHQYIVTDDK--EGPDCELEKHIPD-LHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAAA 142 (386)
T ss_pred HHHHHhcCCeEEEeCCC--CCCHHHHHHHhCC-CeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHHH
Confidence 45677788888665432 3467888888885 99999864 357999999999998 99999999999999999999
Q ss_pred CCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhc
Q 016162 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (394)
Q Consensus 108 ~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~ 187 (394)
+||.|+|+||+|+.+||||++++||++.|++..+++.+++|.|... .....+++|+||||||||+|+||+.+|+++ ++
T Consensus 143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~a 220 (386)
T PLN03139 143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KP 220 (386)
T ss_pred CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEeecHHHHHHHHHH-HH
Confidence 9999999999999999999999999999999999999999997521 112356899999999999999999999997 79
Q ss_pred CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcE
Q 016162 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267 (394)
Q Consensus 188 ~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gai 267 (394)
|||+|++||++....... . ..+ .....++++++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus 221 fG~~V~~~d~~~~~~~~~--~-------~~g-----~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 286 (386)
T PLN03139 221 FNCNLLYHDRLKMDPELE--K-------ETG-----AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVL 286 (386)
T ss_pred CCCEEEEECCCCcchhhH--h-------hcC-----ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeE
Confidence 999999999975321110 0 011 12245899999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 016162 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346 (394)
Q Consensus 268 lIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g 346 (394)
|||+|||++||++||++||++|+|+||++|||++||++. +|||++|||++|||+||.|.++++++...+++|+.+|++|
T Consensus 287 lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G 366 (386)
T PLN03139 287 IVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKG 366 (386)
T ss_pred EEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999864 7999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 016162 347 YPIWG 351 (394)
Q Consensus 347 ~~~~~ 351 (394)
+++..
T Consensus 367 ~~~~~ 371 (386)
T PLN03139 367 EDFPA 371 (386)
T ss_pred CCCCC
Confidence 97653
No 14
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-64 Score=506.64 Aligned_cols=303 Identities=24% Similarity=0.268 Sum_probs=266.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhcccCCcEEEEcccCccccchhHHhhC
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY 108 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~--~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~ 108 (394)
+.|++.++++.+... ...+.+++.+.+.+ +|++|++. ...+++++++++|+| |+|+++|+|+||||+++|.++
T Consensus 62 ~~l~~~g~e~~~~~~--~~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~~ 136 (385)
T PRK07574 62 KFLEERGHELVVTSD--KDGPDSDFEKELPD-ADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASEH 136 (385)
T ss_pred HHHHhcCcEEEEeCC--CCCCHHHHHHHcCC-CeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHHC
Confidence 567778888765432 23467888888874 99999863 467999999999998 999999999999999999999
Q ss_pred CceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcC
Q 016162 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (394)
Q Consensus 109 gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~ 188 (394)
||.|+|++++|+.+||||++++||+++|++..+++.+++|.|..+. ....+++|+|+||||||+|+||+.+|+++ ++|
T Consensus 137 gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~-~~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~f 214 (385)
T PRK07574 137 GITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIAD-CVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPF 214 (385)
T ss_pred CcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc-ccccceecCCCEEEEECCCHHHHHHHHHH-HhC
Confidence 9999999999999999999999999999999999999999975431 11246799999999999999999999997 799
Q ss_pred CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEE
Q 016162 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268 (394)
Q Consensus 189 G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gail 268 (394)
||+|++|||+....... . .. +.....+++|++++||+|++|+|+|++|+++||++.|++||+|++|
T Consensus 215 G~~V~~~dr~~~~~~~~--~-------~~-----g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l 280 (385)
T PRK07574 215 DVKLHYTDRHRLPEEVE--Q-------EL-----GLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYL 280 (385)
T ss_pred CCEEEEECCCCCchhhH--h-------hc-----CceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEE
Confidence 99999999986321110 0 01 1223468999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 016162 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGY 347 (394)
Q Consensus 269 IN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g~ 347 (394)
||+|||+++|++||++||++|+|+||+||||++||++. +|||++|||++|||+||.|.++++++...+++|+.+|++|+
T Consensus 281 IN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~ 360 (385)
T PRK07574 281 VNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGR 360 (385)
T ss_pred EECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999864 69999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 016162 348 PIWGNPN 354 (394)
Q Consensus 348 ~~~~~v~ 354 (394)
++.|.-+
T Consensus 361 ~~~~~~~ 367 (385)
T PRK07574 361 PIRDEYL 367 (385)
T ss_pred CCCCCce
Confidence 9987754
No 15
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=2.6e-64 Score=500.23 Aligned_cols=323 Identities=25% Similarity=0.304 Sum_probs=268.5
Q ss_pred EeCCCCceEEEEeCCCCch--HH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhccc
Q 016162 9 VWNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRA 85 (394)
Q Consensus 9 ~~~~~~~~~vlv~~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l 85 (394)
++..++++|||++.+..+. .| .+.+++.++ . .+.. .+.+|+.+.+. ++|+++++ ...+++++++++|+|
T Consensus 12 ~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~-~~~~----~~~~e~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L 83 (347)
T PLN02928 12 HHSDMRPTRVLFCGPEFPASYSYTREYLQKYPF-I-QVDA----VAREDVPDVIA-NYDICVPK-MMRLDADIIARASQM 83 (347)
T ss_pred cCCCCCCCEEEEECCCchhHHHHHHHHhhcCCe-e-EecC----CCHHHHHHHhc-CCcEEEEC-CCCCCHHHHhcCCCc
Confidence 4566778899999877653 12 344443442 2 2221 35678888887 49998876 457999999999988
Q ss_pred CCcEEEEcccCccccchhHHhhCCceEecCCCC---CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccc
Q 016162 86 GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL 162 (394)
Q Consensus 86 ~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~---~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~ 162 (394)
|+|++.|+|+|+||+++|.++||.|+|+|++ ++.+||||++++||+++|++..+++.+++|.|. . ..+.+
T Consensus 84 --k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~---~--~~~~~ 156 (347)
T PLN02928 84 --KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG---E--PIGDT 156 (347)
T ss_pred --eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcc---c--ccccC
Confidence 9999999999999999999999999999985 789999999999999999999999999999853 2 35679
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhh-hhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
|+|||+||||+|+||+.+|+++ ++|||+|++|||+......... .+- .... ..... .....++++++++||+|+
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~-~~~~~~~~--~~~~~-~~~~~~L~ell~~aDiVv 231 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGL-LIPNGDVD--DLVDE-KGGHEDIYEFAGEADIVV 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhh-cccccccc--ccccc-cCcccCHHHHHhhCCEEE
Confidence 9999999999999999999997 8999999999997432111000 000 0000 00000 013468999999999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCceEEcCC
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPH 320 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~nvilTPH 320 (394)
+|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++ ++|||++|||++|||
T Consensus 232 l~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPH 311 (347)
T PLN02928 232 LCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPH 311 (347)
T ss_pred ECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCc
Confidence 9999999999999999999999999999999999999999999999999999999999999986 479999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016162 321 IASASKWTREGMATLAALNVLGKIKGYPIWG 351 (394)
Q Consensus 321 ia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~ 351 (394)
+|+.|.++++++...+++|+.+|++|+++.|
T Consensus 312 ia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~ 342 (347)
T PLN02928 312 VAGVTEYSYRSMGKIVGDAALQLHAGRPLTG 342 (347)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence 9999999999999999999999999998764
No 16
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=7.4e-63 Score=487.67 Aligned_cols=317 Identities=24% Similarity=0.386 Sum_probs=271.3
Q ss_pred CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (394)
Q Consensus 14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~ 93 (394)
+|++++++.+.+.. +++.+.+. +++++..... ..+ +|..+.+. ++|+++++..+++++++++++|++++|+|++.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~-~e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~ 76 (332)
T PRK08605 2 TKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALT-DDNVEEVE-GFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR 76 (332)
T ss_pred cEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCC-HHHHHHhc-CCCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence 56788888876653 45555443 2333222111 234 44556776 59999998878999999999998666999999
Q ss_pred ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (394)
Q Consensus 94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl 173 (394)
|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|. |.+. ..|++|+|+||||||+
T Consensus 77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG~ 154 (332)
T PRK08605 77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIGT 154 (332)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999884 6542 3578999999999999
Q ss_pred ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (394)
Q Consensus 174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l 253 (394)
|+||+++|++++++|||+|++||++....... . .....++++++++||+|++|+|++++|+++
T Consensus 155 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvIvl~lP~t~~t~~l 217 (332)
T PRK08605 155 GRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT------------Y-----VDYKDTIEEAVEGADIVTLHMPATKYNHYL 217 (332)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCccHhHHh------------h-----ccccCCHHHHHHhCCEEEEeCCCCcchhhh
Confidence 99999999997468999999999986542111 0 112358999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CC-C-----------ccccCCceEEcC
Q 016162 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK-P-----------GLSEMKNAIVVP 319 (394)
Q Consensus 254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~--~~-~-----------~L~~~~nvilTP 319 (394)
++++.|+.||+|++|||+|||.++|+++|+++|++|+++||+||||+.||. +. + +||++|||++||
T Consensus 218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 297 (332)
T PRK08605 218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTP 297 (332)
T ss_pred cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECC
Confidence 999999999999999999999999999999999999999999999999982 32 1 499999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162 320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN 354 (394)
Q Consensus 320 Hia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~ 354 (394)
|+|+.|.++++++...+++|+.+|++|++..+.||
T Consensus 298 Hia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~ 332 (332)
T PRK08605 298 HIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN 332 (332)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence 99999999999999999999999999999998885
No 17
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-62 Score=483.78 Aligned_cols=313 Identities=27% Similarity=0.414 Sum_probs=267.6
Q ss_pred eEEEEeCCCCc-hH-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162 16 YRVVSTKPMPG-TR-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (394)
Q Consensus 16 ~~vlv~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~ 93 (394)
|||++..--+. .. ..+.+++.++++.. .+. .++.+. .+.+. ++|++++...+++++++++++|+.++|+|++.
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~~~-~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~ 76 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTT--SKE-LLSSAT-VDQLK-DYDGVTTMQFGKLENDVYPKLESYGIKQIAQR 76 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEE--cCC-CCCHHH-HHHhC-CCCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence 67766543332 22 33455666655543 222 345554 66776 59999988767899999999984344999999
Q ss_pred ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (394)
Q Consensus 94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl 173 (394)
|+|+|+||+++|+++||.|+|+|++++++||||++++||++.|++..+++.+++|.|. |.+. ..|++|+|+||||||+
T Consensus 77 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~ 154 (330)
T PRK12480 77 TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGT 154 (330)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999874 6432 3578999999999999
Q ss_pred ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (394)
Q Consensus 174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l 253 (394)
|+||+.+|+++ ++|||+|++||++...... . .....++++++++||+|++|+|++++|.++
T Consensus 155 G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 155 GRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYHL 215 (330)
T ss_pred CHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence 99999999997 7999999999998753211 0 012358999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------C----CccccCCceEEcC
Q 016162 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVP 319 (394)
Q Consensus 254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~----------~----~~L~~~~nvilTP 319 (394)
++++.|++||+|++|||+|||.+||++||++||++|+++||+||||++||+. + +|||++|||++||
T Consensus 216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 295 (330)
T PRK12480 216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP 295 (330)
T ss_pred HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence 9999999999999999999999999999999999999999999999999962 1 2699999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162 320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN 354 (394)
Q Consensus 320 Hia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~ 354 (394)
|+|+.|.++++++...+.+|+.+|++|+...+.||
T Consensus 296 Hia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 330 (330)
T PRK12480 296 HIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN 330 (330)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 99999999999999999999999999999988885
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.1e-61 Score=470.83 Aligned_cols=304 Identities=38% Similarity=0.532 Sum_probs=264.7
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-cccCCcEEEEcccCccccchhHHhhCCc
Q 016162 32 LLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGI 110 (394)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l-~~l~~k~I~~~g~G~d~id~~~a~~~gI 110 (394)
.++..+++.......+...+..+....+.+...++.+.....++.+.+.++ |++ |+|+++|+|+||||+++|++|||
T Consensus 31 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI 108 (336)
T KOG0069|consen 31 LLRYQGYQLREEFLKEPKLIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGI 108 (336)
T ss_pred ccccccccceehhccccccchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCc
Confidence 333344444444444444566666666665455555555667788888877 877 99999999999999999999999
Q ss_pred eEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCc
Q 016162 111 AVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190 (394)
Q Consensus 111 ~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~ 190 (394)
+|+|+|+.++.+|||++++++|.++|++..+++++++|.| +|....+.|..+.||||||+|+|+||+.+|+|| ++|||
T Consensus 109 ~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~ 186 (336)
T KOG0069|consen 109 RVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGC 186 (336)
T ss_pred eEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccc
Confidence 9999999999999999999999999999999999999999 788777789999999999999999999999998 78999
Q ss_pred EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270 (394)
Q Consensus 191 ~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN 270 (394)
.+.+++|+.....+. .+|+ ....++++++.+||+|++|||+|++|+|+||++.|++||+|++|||
T Consensus 187 ~i~y~~r~~~~~~~~--~~~~-------------~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN 251 (336)
T KOG0069|consen 187 VILYHSRTQLPPEEA--YEYY-------------AEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVN 251 (336)
T ss_pred eeeeecccCCchhhH--HHhc-------------ccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEe
Confidence 899998876542221 1111 1146899999999999999999999999999999999999999999
Q ss_pred cCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016162 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIW 350 (394)
Q Consensus 271 ~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g~~~~ 350 (394)
++||+++|++++++||++|++.+|+||||++||.++++|++++||++|||||++|.+++.+|+..++.|+.+++.|+++.
T Consensus 252 ~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~ 331 (336)
T KOG0069|consen 252 TARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLL 331 (336)
T ss_pred ccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999976789999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 016162 351 GNPN 354 (394)
Q Consensus 351 ~~v~ 354 (394)
..++
T Consensus 332 ~~~~ 335 (336)
T KOG0069|consen 332 TPVL 335 (336)
T ss_pred CcCC
Confidence 7764
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=2.5e-58 Score=459.02 Aligned_cols=279 Identities=27% Similarity=0.366 Sum_probs=241.2
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (394)
Q Consensus 16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~ 95 (394)
||||+.+.++. ..+.+.+.+ ++.... ....+.+++ . ++|++++++.+++++++++ .+++ |+|+++++
T Consensus 1 mkIl~d~~~~~--~~~~~~~~~-ev~~~~--~~~~~~~~l----~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~ 67 (378)
T PRK15438 1 MKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVAQL----A-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA 67 (378)
T ss_pred CEEEEeCCcch--HHHHHhhcC-cEEEeC--CCCCCHHHh----C-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence 57899888763 245665543 665543 233455553 3 5999999988899999986 6777 99999999
Q ss_pred CccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016162 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (394)
Q Consensus 96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~ 175 (394)
|+||||++++.++||.|+|+||+|+.+||||++++||++.|+. |.+|+||||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~ 126 (378)
T PRK15438 68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN 126 (378)
T ss_pred cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999851 2479999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh----hh
Q 016162 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY 251 (394)
Q Consensus 176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~----t~ 251 (394)
||+.+|+++ ++|||+|++|||..... +. . ..+.++++++++||+|++|+|+|++ |+
T Consensus 127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~~-~---~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 127 VGRRLQARL-EALGIKTLLCDPPRADR---------------GD-E---GDFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc---------------cc-c---cccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 999999997 89999999999854321 00 0 1246899999999999999999996 99
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHH
Q 016162 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 331 (394)
Q Consensus 252 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~ 331 (394)
|+||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++|+..++ |+||||||+|.+++.+
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~ 265 (378)
T PRK15438 187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKAR 265 (378)
T ss_pred cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988778988665 9999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 016162 332 MATLAALNVLGKIKGYPIW 350 (394)
Q Consensus 332 ~~~~~~~ni~~~l~g~~~~ 350 (394)
+..++.+|+.+|+ |.+..
T Consensus 266 ~~~~~~~~l~~~~-~~~~~ 283 (378)
T PRK15438 266 GTTQVFEAYSKFI-GHEQH 283 (378)
T ss_pred HHHHHHHHHHHHH-cCccc
Confidence 9999999999998 55543
No 20
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=1.1e-57 Score=446.61 Aligned_cols=298 Identities=19% Similarity=0.218 Sum_probs=244.5
Q ss_pred EEEEeCCC-CchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162 17 RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (394)
Q Consensus 17 ~vlv~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~ 95 (394)
.+++..+. ..+.|.+.|++.-++.++..... ++ .. ++|+++++.. +.++++ .++| |+|++.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~~-~a~~~~~~~~---~~~~l~-~~~L--k~I~~~~a 65 (312)
T PRK15469 2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-----GD----ND-PADYALVWHP---PVEMLA-GRDL--KAVFALGA 65 (312)
T ss_pred EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-----CC----Cc-cCeEEEEeCC---ChHHhc-cCCc--eEEEEccc
Confidence 34443333 44448888887633333321111 11 12 5898888653 356665 5777 99999999
Q ss_pred CccccchhH-----HhhCCceEecCCC-CCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016162 96 GYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169 (394)
Q Consensus 96 G~d~id~~~-----a~~~gI~v~n~p~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG 169 (394)
|+|++|... +.++||.|+|+++ .++.+||||++++||+++|++..+.+.+++|.|.. ..+.+++|+|||
T Consensus 66 G~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~-----~~~~~l~g~tvg 140 (312)
T PRK15469 66 GVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQP-----LPEYHREDFTIG 140 (312)
T ss_pred ccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCC-----CCCCCcCCCEEE
Confidence 999998332 3458999999875 68999999999999999999999999999998643 234689999999
Q ss_pred EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (394)
Q Consensus 170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~ 249 (394)
|||+|+||+.+|+++ ++|||+|++||++..... +.. .+....++++++++||+|++|+|+|++
T Consensus 141 IvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~~--~~~~~~~l~e~l~~aDvvv~~lPlt~~ 203 (312)
T PRK15469 141 ILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GVQ--SFAGREELSAFLSQTRVLINLLPNTPE 203 (312)
T ss_pred EECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cce--eecccccHHHHHhcCCEEEECCCCCHH
Confidence 999999999999997 799999999998754310 000 011245899999999999999999999
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHH
Q 016162 250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWT 328 (394)
Q Consensus 250 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~ 328 (394)
|+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++. +|||++|||++|||+|+.|.++
T Consensus 204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~ 283 (312)
T PRK15469 204 TVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA 283 (312)
T ss_pred HHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999875 6999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162 329 REGMATLAALNVLGKIKGYPIWGNPN 354 (394)
Q Consensus 329 ~~~~~~~~~~ni~~~l~g~~~~~~v~ 354 (394)
++...+.+|+.+|++|+++.|.||
T Consensus 284 --~~~~~~~~n~~~~~~g~~~~~~V~ 307 (312)
T PRK15469 284 --EAVEYISRTIAQLEKGERVCGQVD 307 (312)
T ss_pred --HHHHHHHHHHHHHHcCCCCcccCC
Confidence 578889999999999999999886
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-57 Score=454.41 Aligned_cols=283 Identities=25% Similarity=0.325 Sum_probs=243.5
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (394)
Q Consensus 16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~ 95 (394)
||||+.+++|-. .+.+.+.+ ++.... ....+.+ .+. ++|++++++.+++++++++ .+++ |+|+++++
T Consensus 1 mkI~~d~~~p~~--~~~~~~~~-~v~~~~--~~~~~~~----~l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~ 67 (381)
T PRK00257 1 MKIVADENIPLL--DAFFAGFG-EIRRLP--GRAFDRA----AVR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI 67 (381)
T ss_pred CEEEEecCchhH--HHHHhhCC-cEEEcC--CcccCHH----HhC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence 689999988632 34554443 555433 2223333 344 5999999988899999997 4766 99999999
Q ss_pred CccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016162 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (394)
Q Consensus 96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~ 175 (394)
|+||||++++.++||.|+|+||+|+.+||||++++||++.|+ .|.++.||||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~ 126 (381)
T PRK00257 68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH 126 (381)
T ss_pred cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence 999999999999999999999999999999999999999884 13579999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCCh----hhh
Q 016162 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY 251 (394)
Q Consensus 176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~----~t~ 251 (394)
||+.+|+++ ++|||+|++|||..... + + ...+.++++++++||+|++|+|+|+ .|+
T Consensus 127 IG~~va~~l-~a~G~~V~~~Dp~~~~~-~-------------~-----~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~ 186 (381)
T PRK00257 127 VGGRLVRVL-RGLGWKVLVCDPPRQEA-E-------------G-----DGDFVSLERILEECDVISLHTPLTKEGEHPTR 186 (381)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc-c-------------c-----CccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence 999999997 89999999999864321 0 0 0124689999999999999999999 599
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHH
Q 016162 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 331 (394)
Q Consensus 252 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~ 331 (394)
|+||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++||.++++|++. |+++|||+||+|.+++.+
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r 265 (381)
T PRK00257 187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKAR 265 (381)
T ss_pred ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877889985 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC
Q 016162 332 MATLAALNVLGKIKGYPIWGNP 353 (394)
Q Consensus 332 ~~~~~~~ni~~~l~g~~~~~~v 353 (394)
+..++.+|+.+|+.+.+.....
T Consensus 266 ~~~~~~~nl~~~~~~~~~~~~~ 287 (381)
T PRK00257 266 GTAQIYQALCRFFGIPARVSLT 287 (381)
T ss_pred HHHHHHHHHHHHHcCCCccchh
Confidence 9999999999999987655444
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=8.5e-57 Score=438.14 Aligned_cols=255 Identities=22% Similarity=0.329 Sum_probs=224.1
Q ss_pred CCcEEEecCCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHH
Q 016162 62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA 141 (394)
Q Consensus 62 ~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~ 141 (394)
++|+++++.. +..+++| |+|++.|+|+|+||+++|.++||.++| +|+++.+||||++++||+++|++..+
T Consensus 34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~ 103 (303)
T PRK06436 34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICEN 103 (303)
T ss_pred CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHH
Confidence 4788765532 1235666 999999999999999999999888777 48899999999999999999999999
Q ss_pred HHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC
Q 016162 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP 221 (394)
Q Consensus 142 ~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (394)
++.+++|.|..+ .+++|+||||||||+|+||+++|+++ ++|||+|++|||+.... +..
T Consensus 104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~- 161 (303)
T PRK06436 104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS- 161 (303)
T ss_pred HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc-
Confidence 999999987532 35799999999999999999999996 89999999999975321 110
Q ss_pred ccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016162 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (394)
Q Consensus 222 ~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~ 301 (394)
....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|++.||+||||++
T Consensus 162 ---~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~ 238 (303)
T PRK06436 162 ---SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN 238 (303)
T ss_pred ---cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence 11358999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCceEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162 302 EPYMKPGLSEMKNAIVVPHIA-SASKWTREGMATLAALNVLGKIKGYPIWGNPN 354 (394)
Q Consensus 302 EP~~~~~L~~~~nvilTPHia-~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~ 354 (394)
||+++.. .+|||++|||++ ++|.++++++...+++|+.+|++|++ .|.||
T Consensus 239 EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~ 289 (303)
T PRK06436 239 EPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVR 289 (303)
T ss_pred CCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEc
Confidence 9986542 689999999986 48899999999999999999999987 57775
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=2.6e-47 Score=345.33 Aligned_cols=177 Identities=42% Similarity=0.563 Sum_probs=152.4
Q ss_pred HHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHH
Q 016162 128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207 (394)
Q Consensus 128 l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~ 207 (394)
+++||++.|++..+++.+++|.| |.+....+++++|+||||||+|+||+.+|+++ ++|||+|++|||+.......
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~-- 75 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA-- 75 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH--
T ss_pred ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc--
Confidence 68999999999999999999997 23344577899999999999999999999997 89999999999998764311
Q ss_pred HhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (394)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (394)
.. . .+ ...+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus 76 ~~-------~-----~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 76 DE-------F-----GV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp HH-------T-----TE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred cc-------c-----cc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 00 0 11 34699999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEeeccCCCCCCC-CccccCCceEEcCCCC
Q 016162 288 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA 322 (394)
Q Consensus 288 ~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia 322 (394)
+|++.||+||||++||++. +|||++|||++|||+|
T Consensus 143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 9999999999999999975 5999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.97 E-value=1.2e-31 Score=258.59 Aligned_cols=281 Identities=28% Similarity=0.372 Sum_probs=236.0
Q ss_pred CHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHH
Q 016162 51 SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130 (394)
Q Consensus 51 ~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~ 130 (394)
+.+|+.+..=..+-+-...-+..++++-+++.+.+ +++.+.|.|+|++|+.+|.+.||.|||.|+...+.+|+-++..
T Consensus 62 stqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~h 139 (435)
T KOG0067|consen 62 STQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCH 139 (435)
T ss_pred chHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHH
Confidence 55677654322233333333556788888999888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHcCccC-CCCCC---cccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH
Q 016162 131 SLAAARRIVEADEFMRAGLYD-GWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (394)
Q Consensus 131 ~L~~~R~~~~~~~~~~~g~~~-~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~ 206 (394)
+|.++|+.....+.+++|.|. .|... ......++|.++|++|+|+.|+.++.+ |++||..|+.||++...-.+.+
T Consensus 140 Il~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~~ 218 (435)
T KOG0067|consen 140 ILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDKS 218 (435)
T ss_pred HHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhhh
Confidence 999999999999999999874 23221 112356899999999999999999999 5999999999999987644331
Q ss_pred HHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (394)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 286 (394)
.+.....++.|++.++|.+++||.+++.+.++|+.-.+.+|+.|++++|++||+++|+.+|.++|
T Consensus 219 ---------------lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaL 283 (435)
T KOG0067|consen 219 ---------------LGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQAL 283 (435)
T ss_pred ---------------cccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhh
Confidence 12234457999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC---CCCCCCC
Q 016162 287 KQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGY---PIWGNPN 354 (394)
Q Consensus 287 ~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g~---~~~~~v~ 354 (394)
+.|++.+++=.-| ...||-+.||.|+|||.++.+..+...+...++..+++...|. .++|.||
T Consensus 284 k~G~i~~aa~~~~-----~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvn 349 (435)
T KOG0067|consen 284 KSGRIRGAAPRSF-----KQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVN 349 (435)
T ss_pred ccCceecccCccc-----ccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHh
Confidence 9999999981111 1247888899999999999999999999999999999999884 4777776
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.86 E-value=2.9e-21 Score=196.49 Aligned_cols=171 Identities=20% Similarity=0.325 Sum_probs=136.8
Q ss_pred EcccCccccc-hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEE
Q 016162 92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV 170 (394)
Q Consensus 92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGI 170 (394)
-+++|+..+- ++.....||+|+|+|++++.++||+++++++++.. ..+|.+ +..+.||+++|
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d------~~~R~~-----------~~~LaGKtVgV 259 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID------GIFRAT-----------DVMIAGKTVVV 259 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH------HHHHhc-----------CCCcCCCEEEE
Confidence 3477776652 22223478999999999999999999999999884 334443 25799999999
Q ss_pred EecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhh
Q 016162 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250 (394)
Q Consensus 171 IGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t 250 (394)
+|+|.||+.+|+++ ++|||+|+++++++....+... .| + ...+++++++.||+|++|+ .+
T Consensus 260 IG~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~~---------~G-----~-~~~~leell~~ADIVI~at----Gt 319 (476)
T PTZ00075 260 CGYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAAM---------EG-----Y-QVVTLEDVVETADIFVTAT----GN 319 (476)
T ss_pred ECCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHh---------cC-----c-eeccHHHHHhcCCEEEECC----Cc
Confidence 99999999999997 8999999999877654322110 11 1 2357999999999999985 47
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC
Q 016162 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK 306 (394)
Q Consensus 251 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~ 306 (394)
.++|+++.|+.||+|++|||+||+ |++.++++|+++. ++|+++.||...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 889999999999999999999999 7888889998753 789999999754
No 26
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.84 E-value=7.5e-20 Score=157.75 Aligned_cols=101 Identities=32% Similarity=0.441 Sum_probs=87.0
Q ss_pred EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCc
Q 016162 18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (394)
Q Consensus 18 vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~ 97 (394)
||++++++++ .++.|++ ++++++.. ..+.+++.+.+.+ +|+++++..+++++++++++|+| |+|++.|+|+
T Consensus 1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~~-~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~ 71 (133)
T PF00389_consen 1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLKD-ADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV 71 (133)
T ss_dssp EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHTT-ESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhCC-CeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence 6889999774 5788888 66887665 3478899999985 99999998877999999999988 9999999999
Q ss_pred cccchhHHhhCCceEecCCCCCchhhHHHH
Q 016162 98 NNVDVNAANKYGIAVGNTPGVLTETTAELA 127 (394)
Q Consensus 98 d~id~~~a~~~gI~v~n~p~~~~~~vAE~~ 127 (394)
|+||+++|+++||.|+|+||+++.+||||+
T Consensus 72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999999999
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.83 E-value=1.1e-19 Score=176.39 Aligned_cols=198 Identities=18% Similarity=0.186 Sum_probs=145.5
Q ss_pred HHHHHHhCCCeEEEecCCCC-----CCCHHHHHHH-hcCCCcEEEecCC----------------ccccHHHHHHhcccC
Q 016162 29 WINLLIEQDCRVEICTQKKT-----ILSVEDIIAL-IGDKCDGVIGQLT----------------EDWGETLFAALSRAG 86 (394)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~-----~~~~~el~~~-~~~~~d~ii~~~~----------------~~i~~~~l~~l~~l~ 86 (394)
..+.|.+.|+.+.....+.. ..+..++.+. +. ++|++|.-.+ ..+++++++++|.
T Consensus 16 ~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~-- 92 (287)
T TIGR02853 16 LIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLT-TLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKG-- 92 (287)
T ss_pred HHHHHHHCCCEEEEEeccccccccccceeecchhhhhc-cCCEEEECCccccCCceEecccccCCccccHHHHHhcCC--
Confidence 45778888988876644311 0112222322 33 5888875332 2356788888873
Q ss_pred CcEEEEcccCccccchh-HHhhCCceEe------cCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCccc
Q 016162 87 GKAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159 (394)
Q Consensus 87 ~k~I~~~g~G~d~id~~-~a~~~gI~v~------n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~ 159 (394)
++...+|+++.|++ +|+++||.|+ |++.+|+.++||+++.+++.. .
T Consensus 93 ---~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~ 145 (287)
T TIGR02853 93 ---HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------T 145 (287)
T ss_pred ---CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------c
Confidence 44466788888888 9999999999 999999999999999877732 1
Q ss_pred ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
+.+++|++++|+|+|.||+.+|++| +++|++|++++|+.... +.. ...+.. .....+++++++++|+
T Consensus 146 ~~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~-~~~--------~~~g~~---~~~~~~l~~~l~~aDi 212 (287)
T TIGR02853 146 DFTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADL-ARI--------TEMGLI---PFPLNKLEEKVAEIDI 212 (287)
T ss_pred CCCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHCCCe---eecHHHHHHHhccCCE
Confidence 2378999999999999999999997 79999999999987542 111 111211 1123467889999999
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (394)
Q Consensus 240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG 274 (394)
|++|+|. .+++++.++.|++++++||++..
T Consensus 213 Vint~P~-----~ii~~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 213 VINTIPA-----LVLTADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred EEECCCh-----HHhCHHHHhcCCCCeEEEEeCcC
Confidence 9999994 37789999999999999999873
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.68 E-value=2.3e-15 Score=146.99 Aligned_cols=195 Identities=19% Similarity=0.182 Sum_probs=142.3
Q ss_pred HHHHHHhCCCeEEEecCCCCCC---------CHHHHHHHhcCCCcEEEecCC----------------ccccHHHHHHhc
Q 016162 29 WINLLIEQDCRVEICTQKKTIL---------SVEDIIALIGDKCDGVIGQLT----------------EDWGETLFAALS 83 (394)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~---------~~~el~~~~~~~~d~ii~~~~----------------~~i~~~~l~~l~ 83 (394)
..+.|.+.|+++.+...++... +.++ .+. ++|+++.-.+ ..++++.++.+|
T Consensus 17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~ 92 (296)
T PRK08306 17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP 92 (296)
T ss_pred HHHHHHHCCCEEEEEeccccccccCCceeeccHHH---Hhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence 4677888899887654432111 2222 333 5898885422 123678899999
Q ss_pred ccCCcEEEEcccCccccchhHHhhCCceEecCCCC------CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCc
Q 016162 84 RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157 (394)
Q Consensus 84 ~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~------~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~ 157 (394)
+. ..+ ..|.+.++++ +.|.++||.+.+.+.. |+.++||.++.+++. +
T Consensus 93 ~~--~~v-~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~--~--------------------- 145 (296)
T PRK08306 93 EH--CTI-FSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE--H--------------------- 145 (296)
T ss_pred CC--CEE-EEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH--h---------------------
Confidence 85 433 3688999988 8899999999997764 889999997765431 0
Q ss_pred ccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (394)
Q Consensus 158 ~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (394)
.+.+++|++++|||+|.+|+.+++.| +++|++|+++||+.... +. .. ..|. ......++.+.++++
T Consensus 146 -~~~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~-~~-~~-------~~G~---~~~~~~~l~~~l~~a 211 (296)
T PRK08306 146 -TPITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHL-AR-IT-------EMGL---SPFHLSELAEEVGKI 211 (296)
T ss_pred -CCCCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HH-HH-------HcCC---eeecHHHHHHHhCCC
Confidence 11367899999999999999999997 79999999999987542 11 11 1121 111234677889999
Q ss_pred CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
|+|+.++| ..+++++.++.|++++++||++.
T Consensus 212 DiVI~t~p-----~~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 212 DIIFNTIP-----ALVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CEEEECCC-----hhhhhHHHHHcCCCCcEEEEEcc
Confidence 99999998 35688999999999999999985
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.62 E-value=1.3e-15 Score=154.92 Aligned_cols=121 Identities=20% Similarity=0.318 Sum_probs=101.3
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
..+.|++++|+|+|.||+.+|+++ ++|||+|+++++++......... | + ...+++++++.+|+|
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~---------G-----~-~vv~leEal~~ADVV 313 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALME---------G-----Y-QVLTLEDVVSEADIF 313 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhc---------C-----C-eeccHHHHHhhCCEE
Confidence 357999999999999999999996 89999999999887543222111 1 1 124788999999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCcceEEeeccCCC
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDE 302 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR-G~~vde~aL~~a--L~~g~l~gaalDV~~~E 302 (394)
+.+ ..+.++++++.|+.||+|++|+|++| +..||+++|.++ ++.+.++ +.+|+|+.|
T Consensus 314 I~t----TGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 314 VTT----TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred EEC----CCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 974 45789999999999999999999999 689999999998 8888877 999999875
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.61 E-value=2.3e-14 Score=144.68 Aligned_cols=121 Identities=27% Similarity=0.318 Sum_probs=101.2
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++....+.. ..| + ...+++++++.+|+|
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~---------~~G-----~-~v~~leeal~~aDVV 254 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAA---------MDG-----F-RVMTMEEAAKIGDIF 254 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHH---------hcC-----C-EeCCHHHHHhcCCEE
Confidence 358999999999999999999996 899999999988775433221 112 1 234678899999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeccCC
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFED 301 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l~gaalDV~~~ 301 (394)
+.++ .+.++|+.+.|..||+|++++|++|+++ ||.++|.+++.+.+..+..+|+|.-
T Consensus 255 ItaT----G~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 255 ITAT----GNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred EECC----CCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 8765 3688899999999999999999999998 9999999999888888999999873
No 31
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.49 E-value=1.7e-12 Score=131.77 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=112.5
Q ss_pred EcccCccccc-hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEE
Q 016162 92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV 170 (394)
Q Consensus 92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGI 170 (394)
-+++|+..+- .....+.+++|.|++..++.+.-|...+.-.+....+. +. .+..+.|++++|
T Consensus 155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~------ra-----------t~~~l~Gk~VlV 217 (425)
T PRK05476 155 ETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK------RA-----------TNVLIAGKVVVV 217 (425)
T ss_pred cchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH------Hh-----------ccCCCCCCEEEE
Confidence 3577776652 22223578999999999988865544433332222111 11 123589999999
Q ss_pred EecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhh
Q 016162 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250 (394)
Q Consensus 171 IGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t 250 (394)
+|+|.||+.+|+++ +++|++|+++|+++....+... .| + ...++++++..+|+|+.++ .+
T Consensus 218 iG~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~~---------~G-----~-~v~~l~eal~~aDVVI~aT----G~ 277 (425)
T PRK05476 218 AGYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAAM---------DG-----F-RVMTMEEAAELGDIFVTAT----GN 277 (425)
T ss_pred ECCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHHh---------cC-----C-EecCHHHHHhCCCEEEECC----CC
Confidence 99999999999996 8999999999988765332211 11 1 1347889999999998875 35
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016162 251 YHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (394)
Q Consensus 251 ~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~ 284 (394)
.++|+.+.|..||+|++++|+++... +|.++|.+
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 67899999999999999999999776 77777654
No 32
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.46 E-value=1.9e-13 Score=133.11 Aligned_cols=93 Identities=26% Similarity=0.332 Sum_probs=75.5
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
..|+||||||||+|+||+.+|++| +++|++|++|++..... +. ....| + ...+++|++++||+|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~-~~--------A~~~G-----~-~v~sl~Eaak~ADVV 75 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSF-EV--------AKADG-----F-EVMSVSEAVRTAQVV 75 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhh-HH--------HHHcC-----C-EECCHHHHHhcCCEE
Confidence 479999999999999999999998 79999999998653221 11 01112 1 124899999999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVN 270 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN 270 (394)
++|+|+ +++.++++++.++.||+|++|+-
T Consensus 76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f 104 (335)
T PRK13403 76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF 104 (335)
T ss_pred EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE
Confidence 999996 77899999999999999997754
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.35 E-value=2.3e-12 Score=114.94 Aligned_cols=115 Identities=24% Similarity=0.262 Sum_probs=86.5
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
++|||||+|.||+.+|++| ..-|.+|++|||++++..+ + ...+ .....++.|++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~~~-~--------~~~g-----~~~~~s~~e~~~~~dvvi~~v~ 66 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKAEA-L--------AEAG-----AEVADSPAEAAEQADVVILCVP 66 (163)
T ss_dssp BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHHHH-H--------HHTT-----EEEESSHHHHHHHBSEEEE-SS
T ss_pred CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhhhh-h--------HHhh-----hhhhhhhhhHhhcccceEeecc
Confidence 5899999999999999998 5789999999999765322 1 1122 2346799999999999999999
Q ss_pred CChhhhhccc-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162 246 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (394)
Q Consensus 246 lt~~t~~li~-~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD 297 (394)
..++++.++. .+.++.+++|.++||+++..+-....+.+.+.+.. ...+|
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vd 117 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVD 117 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEE
T ss_pred cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeee
Confidence 8788777663 23788899999999999999999999999998654 44555
No 34
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.34 E-value=6.7e-12 Score=121.07 Aligned_cols=124 Identities=23% Similarity=0.186 Sum_probs=99.5
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
.+||+||+|.||..+|++| ..-|..|++|||++++..+. +...|. ....++.|+.+.+|+|++|+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~--------~~~~Ga-----~~a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAEL--------LAAAGA-----TVAASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHH--------HHHcCC-----cccCCHHHHHHhCCEEEEecC
Confidence 4799999999999999998 68899999999998764222 122232 335688999999999999999
Q ss_pred CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (394)
Q Consensus 246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP 303 (394)
.+++.+.++- ...++.+|+|+++||+++.++...+.+.+++++..+...=-=|.-..+
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~ 126 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP 126 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence 9999888874 578999999999999999999999999999998864433222444443
No 35
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.33 E-value=9.2e-12 Score=110.23 Aligned_cols=103 Identities=29% Similarity=0.431 Sum_probs=75.9
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
..+.||++.|+|||.+|+.+|+.| +++|++|++++..+....+...+.| ...+++++++++|++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~ 82 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF 82 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence 468999999999999999999997 8999999999999988777665543 235899999999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV 283 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~ 283 (394)
+.++- ...++..+.|.+||+|+++.|++.-.. +|-+.|.
T Consensus 83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeecccc
Confidence 88764 367889999999999999999987544 5544443
No 36
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.23 E-value=3.6e-10 Score=114.68 Aligned_cols=105 Identities=25% Similarity=0.381 Sum_probs=83.2
Q ss_pred ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
+..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++...... ...| + ...++++.+..+|+
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A---------~~~G-----~-~~~~~~e~v~~aDV 260 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQA---------AMEG-----Y-EVMTMEEAVKEGDI 260 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHH---------HhcC-----C-EEccHHHHHcCCCE
Confidence 3568999999999999999999996 89999999999887543221 1112 1 12356788999999
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016162 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (394)
Q Consensus 240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~ 284 (394)
|+.|.. +.+.++...|..||+|++++|++++.+ +|..+|..
T Consensus 261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 998753 456788888999999999999999876 88777764
No 37
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.23 E-value=4.7e-11 Score=116.12 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=88.6
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCC
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPl 246 (394)
+|||||+|.||+.+|+.+ ...|++|++||+++... +.. ...|. ....++.+++++||+|++|+|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~--------~~~g~-----~~~~~~~~~~~~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DEL--------LAAGA-----VTAETARQVTEQADVIFTMVPD 65 (291)
T ss_pred CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHCCC-----cccCCHHHHHhcCCEEEEecCC
Confidence 589999999999999998 58899999999987542 211 11221 1245788999999999999998
Q ss_pred Chhhhhcc-c-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162 247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (394)
Q Consensus 247 t~~t~~li-~-~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ 292 (394)
++.++.++ + ...+..+++|+++||+++..+.+.++|.+.+++..+.
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 87777664 3 3467889999999999999999999999999876443
No 38
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.21 E-value=6.6e-11 Score=115.24 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=94.1
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
++|||||+|.||+.+|+.+ ...|.+|++|||++..... . ...+. ....++++++.+||+|++|+|
T Consensus 3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~~~-~--------~~~g~-----~~~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAVAE-V--------IAAGA-----ETASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH-H--------HHCCC-----eecCCHHHHHhcCCEEEEeCC
Confidence 4799999999999999998 5789999999998765221 1 11121 224578999999999999999
Q ss_pred CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (394)
Q Consensus 246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP 303 (394)
.+..++.++. .+.+..+++|.++||+++..+...+++.+.+.+..+...---|+-.+|
T Consensus 68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 8888777763 346788999999999999999888899999887655443333454433
No 39
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.17 E-value=1.3e-10 Score=113.50 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=90.0
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
++|||||+|.||..+|+.+ ...|.+|++||+++.... .+ ...+. ....++.+++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~~-~~--------~~~g~-----~~~~s~~~~~~~aDvVi~~vp 66 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAVD-AL--------VDKGA-----TPAASPAQAAAGAEFVITMLP 66 (296)
T ss_pred CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HH--------HHcCC-----cccCCHHHHHhcCCEEEEecC
Confidence 4799999999999999998 577999999999876532 11 11121 234688899999999999999
Q ss_pred CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (394)
Q Consensus 246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ 292 (394)
.+...+.++. ...+..+++|.++||++++.+...+.+.+.+.+..+.
T Consensus 67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 8776777664 3467789999999999999999999999999887654
No 40
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.17 E-value=1.9e-10 Score=112.54 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=90.5
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEEEc
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~ 243 (394)
+|||||+|+||+.+|++| ...|.+|++||++++...+ +...| .....++++++++ +|+|++|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~~~---------~~~~g-----~~~~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAVDV---------AGKLG-----ITARHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHHHH---------HHHCC-----CeecCCHHHHHHhCCCCCEEEEE
Confidence 799999999999999998 5789999999998754321 11122 1234688898876 6999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD 297 (394)
+|..+.++.++ .+.+..+++|.++||+++..+.+..++.+.+++..+. .+|
T Consensus 67 vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 67 VPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred ecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 99877888877 4677889999999999999999999999999876543 366
No 41
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.10 E-value=3.3e-10 Score=111.74 Aligned_cols=119 Identities=23% Similarity=0.239 Sum_probs=85.8
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
..|+|++|||||+|+||+++|+.| +.+|++|+++++........ . ...| +. ..++++++++||+|
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~-A-------~~~G-----~~-~~s~~eaa~~ADVV 77 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK-A-------EADG-----FE-VLTVAEAAKWADVI 77 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH-H-------HHCC-----Ce-eCCHHHHHhcCCEE
Confidence 468999999999999999999998 79999999887764432211 1 1112 12 24889999999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~ 304 (394)
++++|.+.. ..+++++.+..|++|++| -++.|--+.. ++ ...+..+||+-..|.
T Consensus 78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~------~~--~~p~~~~~Vi~vaPn 131 (330)
T PRK05479 78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNIHF------GQ--IVPPADVDVIMVAPK 131 (330)
T ss_pred EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCChhh------ce--eccCCCCcEEEeCCC
Confidence 999996554 777778888999999988 6666632211 11 123456788887775
No 42
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.07 E-value=8.2e-10 Score=108.09 Aligned_cols=110 Identities=21% Similarity=0.276 Sum_probs=88.5
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEEEc
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~ 243 (394)
+|||||+|.||+.+|++| ...|.+|.+||+++....+ + ...| .....+++++++. +|+|++|
T Consensus 2 ~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~~~-~--------~~~g-----~~~~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAVEA-L--------AEEG-----ATGADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHHHH-H--------HHCC-----CeecCCHHHHHhhcCCCCEEEEE
Confidence 799999999999999998 5789999999999765321 1 1112 2234588888876 6999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ 292 (394)
+|..+.+..++ ...+..+++|.++||++++.......+.+.+++..+.
T Consensus 67 v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 67 VPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114 (301)
T ss_pred ecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence 99776777777 4677889999999999999999999999999887654
No 43
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.04 E-value=1.4e-09 Score=112.74 Aligned_cols=128 Identities=12% Similarity=0.126 Sum_probs=100.1
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEEEc
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~ 243 (394)
+|||||+|.||+.+|++| ..-|.+|.+|||++++.. .+.+.. ...|... .....+++|+++. +|+|++|
T Consensus 8 ~IG~IGLG~MG~~mA~nL-~~~G~~V~V~NRt~~k~~-~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNI-AEKGFPISVYNRTTSKVD-ETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CEEEEeeHHHHHHHHHHH-HhCCCeEEEECCCHHHHH-HHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence 699999999999999998 577999999999987532 221100 0012111 1134688888876 9999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP 303 (394)
+|..+.+..++ ...++.+++|.++||+++...-++..+.+.+++..+.....=|.-.++
T Consensus 80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 99999888888 578889999999999999999999999999998877766666776554
No 44
>PLN02256 arogenate dehydrogenase
Probab=99.04 E-value=4.1e-09 Score=103.38 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=92.6
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS 241 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~ 241 (394)
-++++|||||+|.||+.+|+.+ +..|.+|++||++...... . ..|. ....++++++ ..+|+|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~~a---~-------~~gv-----~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSDIA---A-------ELGV-----SFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHHHH---H-------HcCC-----eeeCCHHHHhhCCCCEEE
Confidence 3667999999999999999998 6789999999998632111 1 1121 1245788876 4799999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----ccccCCceEE
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----GLSEMKNAIV 317 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~----~L~~~~nvil 317 (394)
+|+|. ..+..++.+-....++++++++|++..+-+..+++.+.+..+ ..+....|...+ ..+...++++
T Consensus 98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~------~~~V~~HPmaG~e~~~~~~~~~~~~~ 170 (304)
T PLN02256 98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEE------FDILCTHPMFGPESGKGGWAGLPFVY 170 (304)
T ss_pred EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCC------CeEEecCCCCCCCCCccccCCCeEEE
Confidence 99994 456666644335678999999999996544444554444322 245556776321 3566677888
Q ss_pred cCCC
Q 016162 318 VPHI 321 (394)
Q Consensus 318 TPHi 321 (394)
+|+.
T Consensus 171 ~~~~ 174 (304)
T PLN02256 171 DKVR 174 (304)
T ss_pred ecce
Confidence 8763
No 45
>PLN02712 arogenate dehydrogenase
Probab=99.02 E-value=1.4e-09 Score=116.90 Aligned_cols=112 Identities=16% Similarity=0.204 Sum_probs=83.5
Q ss_pred cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-cc
Q 016162 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA 237 (394)
Q Consensus 159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~a 237 (394)
.|.++.+++|||||+|+||+.+|+.+ +.+|++|++||++.... . . ...|. ....++++++. .+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~~--~-a-------~~~Gv-----~~~~~~~el~~~~a 426 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYSD--E-A-------QKLGV-----SYFSDADDLCEEHP 426 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHHH--H-H-------HHcCC-----eEeCCHHHHHhcCC
Confidence 46788999999999999999999998 68899999999985321 1 1 11121 12458888876 58
Q ss_pred CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (394)
Q Consensus 238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (394)
|+|++|+| ...+..++.+-.+..||+|++++|++.++-...+++.+.+.
T Consensus 427 DvVILavP-~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~ 475 (667)
T PLN02712 427 EVILLCTS-ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP 475 (667)
T ss_pred CEEEECCC-hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc
Confidence 99999999 46778888765555799999999999987444444444433
No 46
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.96 E-value=4.3e-09 Score=108.89 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=98.4
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc---ccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~l 242 (394)
.+|||||+|.||+++|++| ...|.+|.+|||+++...+ +.+. ....| .......+++|+++ ++|+|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~~~-l~~~----~~~~g---~~i~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKTEE-FVKK----AKEGN---TRVKGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HHHh----hhhcC---CcceecCCHHHHHhcCCCCCEEEE
Confidence 4799999999999999998 5789999999999876322 1110 00011 11223568999886 4899999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP 303 (394)
++|....+..++ ++.+..+++|.++||++.+..-|+..+.+.+.+..+.....=|.-.++
T Consensus 73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 999888888888 567888999999999999999999999999998777665555665543
No 47
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.96 E-value=4.5e-09 Score=102.55 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=87.7
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCC
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPl 246 (394)
+|||||+|+||+.+|+.| ...|.+|++||+++.. +.+ ...|. ....+..+++++||+|++|+|.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~--------~~~g~-----~~~~s~~~~~~~advVi~~v~~ 65 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DEL--------LSLGA-----VSVETARQVTEASDIIFIMVPD 65 (292)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHH--------HHcCC-----eecCCHHHHHhcCCEEEEeCCC
Confidence 699999999999999998 5778999999987632 221 11121 2346888999999999999998
Q ss_pred Chhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162 247 DKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (394)
Q Consensus 247 t~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD 297 (394)
.+..+..+. ...++.+++|.++||+++..+-....+.+.+.+..+. .+|
T Consensus 66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd 116 (292)
T PRK15059 66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD 116 (292)
T ss_pred hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence 877777653 2357778999999999999998889999988876433 445
No 48
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.93 E-value=1.7e-08 Score=97.75 Aligned_cols=136 Identities=14% Similarity=0.203 Sum_probs=86.5
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCC
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPl 246 (394)
+|||||+|.||+++|+.| +..|.+|++||++....... ...|... ....+. +.+++||+|++|+|.
T Consensus 2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a---------~~~g~~~---~~~~~~-~~~~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERA---------IERGLVD---EASTDL-SLLKDCDLVILALPI 67 (279)
T ss_pred eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHH---------HHCCCcc---cccCCH-hHhcCCCEEEEcCCH
Confidence 799999999999999998 57799999999986542211 1112111 111234 468999999999994
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----------ccccCCceE
Q 016162 247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----------GLSEMKNAI 316 (394)
Q Consensus 247 t~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~----------~L~~~~nvi 316 (394)
. ....++ ++....++++++++|++.-+. . .++++...... +....|...+ .|+...+++
T Consensus 68 ~-~~~~~~-~~l~~~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~-----~v~~HPm~G~~~~g~~~a~~~lf~g~~~~ 136 (279)
T PRK07417 68 G-LLLPPS-EQLIPALPPEAIVTDVGSVKA---P-IVEAWEKLHPR-----FVGSHPMAGTAESGVEAGQRGLFKNRPWV 136 (279)
T ss_pred H-HHHHHH-HHHHHhCCCCcEEEeCcchHH---H-HHHHHHHhhCC-----ceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence 3 333333 566677899999999987442 2 33344322111 2233454322 267778999
Q ss_pred EcCCCCCCcHHH
Q 016162 317 VVPHIASASKWT 328 (394)
Q Consensus 317 lTPHia~~t~~~ 328 (394)
+||+-. .+.++
T Consensus 137 l~p~~~-~~~~~ 147 (279)
T PRK07417 137 LTPTEN-TDLNA 147 (279)
T ss_pred EccCCC-CCHHH
Confidence 999754 34443
No 49
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.92 E-value=8.6e-09 Score=100.83 Aligned_cols=110 Identities=19% Similarity=0.270 Sum_probs=84.8
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH---hcccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l 242 (394)
++|||||+|.||..+|+.| ...|.+|.+|||+++... .. ...+.. ...+++++ +..+|+|++
T Consensus 1 M~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~~-~l--------~~~g~~-----~~~s~~~~~~~~~~~dvIi~ 65 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAVK-AM--------KEDRTT-----GVANLRELSQRLSAPRVVWV 65 (298)
T ss_pred CEEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHHH-HH--------HHcCCc-----ccCCHHHHHhhcCCCCEEEE
Confidence 3799999999999999998 577999999999986532 21 111211 12455554 456899999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ 292 (394)
|+|.. .+..++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus 66 ~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 66 MVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred EcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 99976 777777 5677888999999999999989999999988876554
No 50
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.91 E-value=1.4e-08 Score=104.39 Aligned_cols=134 Identities=18% Similarity=0.268 Sum_probs=93.5
Q ss_pred CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
++|+||| +|.||+++|+.+ +..|.+|++||++.....+ ... ..|. ....++.+.+.+||+|++|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~~~-~a~-------~~gv-----~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKGKE-VAK-------ELGV-----EYANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHHHH-HHH-------HcCC-----eeccCHHHHhccCCEEEEec
Confidence 3799997 999999999997 6889999999998654211 111 1121 12357888899999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CCCccccCCceEEcCCC
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI 321 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~--~~~~L~~~~nvilTPHi 321 (394)
|. ..+..++ ++....+++++++++++..+....+++.+.+.. +..+....|. +..+++....+++||+-
T Consensus 67 p~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~------~~~~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 67 PI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE------GVEILPTHPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred CH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC------CCEEEEcCCCCCCCCcccCCCEEEEecCC
Confidence 95 3455555 556677899999999998554444455544432 2234445676 33467788899999974
No 51
>PLN02858 fructose-bisphosphate aldolase
Probab=98.90 E-value=6.6e-09 Score=119.51 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=95.2
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
..++||+||+|.||..||++| ..-|.+|++||+++.... .+ ...|. ....++.|+.+.||+|++|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L-~~~G~~v~v~dr~~~~~~-~l--------~~~Ga-----~~~~s~~e~a~~advVi~~ 67 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSL-LRSGFKVQAFEISTPLME-KF--------CELGG-----HRCDSPAEAAKDAAALVVV 67 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HH--------HHcCC-----eecCCHHHHHhcCCEEEEE
Confidence 356899999999999999998 577999999999876532 21 11222 2357899999999999999
Q ss_pred CCCChhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec
Q 016162 244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298 (394)
Q Consensus 244 lPlt~~t~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV 298 (394)
+|..+..+.++ ....++.+++|.++||+|+..+-....+.+.+.+..-....+|.
T Consensus 68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 99888888876 34678889999999999999999999999998875411335663
No 52
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.88 E-value=2.6e-08 Score=99.95 Aligned_cols=144 Identities=17% Similarity=0.121 Sum_probs=88.8
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
++|+|||+|.||+++|+.+ +..|.+|.+|++++....... . ...+. ......++++++++||+|++|+|
T Consensus 1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~--a-----~~~~~---~~~~~~~~~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLAR--A-----LGFGV---IDELAADLQRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHH--H-----hcCCC---CcccccCHHHHhcCCCEEEEeCC
Confidence 4799999999999999998 677887777776654321110 0 00111 11123578888999999999999
Q ss_pred CChhhhhcccHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC----------CccccCCc
Q 016162 246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKN 314 (394)
Q Consensus 246 lt~~t~~li~~~~l~-~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~----------~~L~~~~n 314 (394)
. ..+..++ ++... .++++++++|++.-+.-..+++.+.+.. .. .+....|.+. ..|+....
T Consensus 70 ~-~~~~~vl-~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~-----~~ig~HPMaG~e~sG~~aa~~~lf~g~~ 141 (359)
T PRK06545 70 V-DATAALL-AELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LI-----RFVGGHPMAGSHKSGVAAARADLFENAP 141 (359)
T ss_pred H-HHHHHHH-HHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CC-----eEEeeCCcCcCchhhHHHhcHHHHCCCc
Confidence 5 4556665 33333 4789999999987654222333222111 11 2223356543 24777788
Q ss_pred eEEcCCCCCCcHHHH
Q 016162 315 AIVVPHIASASKWTR 329 (394)
Q Consensus 315 vilTPHia~~t~~~~ 329 (394)
+++||+-. .+.+..
T Consensus 142 ~il~~~~~-~~~~~~ 155 (359)
T PRK06545 142 WVLTPDDH-TDPDAV 155 (359)
T ss_pred EEEecCCC-CCHHHH
Confidence 99999743 344443
No 53
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.88 E-value=3.9e-08 Score=98.73 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=87.1
Q ss_pred cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
+.-.||+|||+ |.||+++|+.|++.+|.+|++||+... ...++++.+++||+|+
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi 56 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLI 56 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence 34579999999 999999999984456999999998421 1246788899999999
Q ss_pred EcCCCChhhhhcccHHHH---hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC---CccccCCce
Q 016162 242 LHPVLDKTTYHLINKERL---ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK---PGLSEMKNA 315 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l---~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~---~~L~~~~nv 315 (394)
+|+|- ..+..++. +.. ..++++++++|++.=+- .+++++.... .++...+|..- +.+++..++
T Consensus 57 lavPv-~~~~~~l~-~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~ 125 (370)
T PRK08818 57 FSAPI-RHTAALIE-EYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVM 125 (370)
T ss_pred EeCCH-HHHHHHHH-HHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeE
Confidence 99993 34455543 222 34899999999987442 2233332221 24667788743 468888899
Q ss_pred EEcCC
Q 016162 316 IVVPH 320 (394)
Q Consensus 316 ilTPH 320 (394)
++||.
T Consensus 126 iltp~ 130 (370)
T PRK08818 126 VVCEA 130 (370)
T ss_pred EEeCC
Confidence 99996
No 54
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.86 E-value=7.4e-09 Score=99.21 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=95.3
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
...++||+||+|.||..+++.| ...|.+|++|||+..+..+ + .+.| .....++.|+.+.||+|+.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nL-ik~G~kVtV~dr~~~k~~~-f--------~~~G-----a~v~~sPaeVae~sDvvit 97 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNL-IKAGYKVTVYDRTKDKCKE-F--------QEAG-----ARVANSPAEVAEDSDVVIT 97 (327)
T ss_pred cccceeeEEeeccchHHHHHHH-HHcCCEEEEEeCcHHHHHH-H--------HHhc-----hhhhCCHHHHHhhcCEEEE
Confidence 4578999999999999999998 6889999999999876422 1 1223 2345789999999999999
Q ss_pred cCCCChhhhhccc--HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162 243 HPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (394)
Q Consensus 243 ~lPlt~~t~~li~--~~~l~~mk~gail-IN~aRG~~vde~aL~~aL~~g~l~gaalD 297 (394)
++|...+.+.++. ...|+..++|... |+.++-+..-...|.++++... +-.+|
T Consensus 98 mv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~--~~~vD 153 (327)
T KOG0409|consen 98 MVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG--GRFVD 153 (327)
T ss_pred EcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC--CeEEe
Confidence 9998888888774 3578888888888 8999988888889999998764 44555
No 55
>PLN02858 fructose-bisphosphate aldolase
Probab=98.86 E-value=1e-08 Score=117.90 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=89.9
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
.++|||||+|.||..||++| ...|.+|++||+++.... .+ ...|. ....++.+++++||+|++|+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~l--------~~~Ga-----~~~~s~~e~~~~aDvVi~~V 388 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTLV-RF--------ENAGG-----LAGNSPAEVAKDVDVLVIMV 388 (1378)
T ss_pred CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HH--------HHcCC-----eecCCHHHHHhcCCEEEEec
Confidence 47899999999999999998 688999999999875532 11 11221 12468899999999999999
Q ss_pred CCChhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162 245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (394)
Q Consensus 245 Plt~~t~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (394)
|...+++.++ +...++.+++|.++||+++..+-..+.+.+.+.+
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 9888888887 3467888999999999999999888999998887
No 56
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.86 E-value=1.8e-08 Score=104.31 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=92.6
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh---cccCEEEEc
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLH 243 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l~ 243 (394)
.|||||+|.||+.+|++| ..-|.+|.+|||+++... ...+.+ ..+ .......++++++ +.+|+|++|
T Consensus 1 ~IG~IGLG~MG~~mA~nL-~~~G~~V~v~drt~~~~~-~l~~~~-----~~g---~~~~~~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNM-ADHGFTVSVYNRTPEKTD-EFLAEH-----AKG---KKIVGAYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHH-HhcCCeEEEEeCCHHHHH-HHHhhc-----cCC---CCceecCCHHHHHhhcCCCCEEEEE
Confidence 389999999999999998 577999999999986532 221110 001 0112245677766 468999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~E 302 (394)
+|..+.+..++ ++.+..+++|.++||+++...-|+..+.+.+.+..+.....=|.-.+
T Consensus 71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 99877788877 56778899999999999999999999999998776655444455444
No 57
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.85 E-value=8.5e-08 Score=92.73 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=111.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+++....++ ..+++|+.+.+. ++.|+|++..+ ..+++. +++..+-. |= +|.+--
T Consensus 55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KD-------VDGl~~ 124 (285)
T PRK14189 55 KACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KD-------VDGFHV 124 (285)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cC-------cccCCh
Confidence 34456788887766654 357788776663 24689999865 345543 44444332 31 222210
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChH-HHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~vA 181 (394)
. ..|-...+.+ .....++.-++-++ + +.+.++.||++.|||.|.+ |+.+|
T Consensus 125 ~---n~g~l~~~~~-~~~PcTp~aii~lL----~---------------------~~~i~l~Gk~vvViGrs~iVGkPla 175 (285)
T PRK14189 125 A---NAGALMTGQP-LFRPCTPYGVMKML----E---------------------SIGIPLRGAHAVVIGRSNIVGKPMA 175 (285)
T ss_pred h---hhhHhhCCCC-CCcCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence 0 0111111222 23445555554333 1 1235899999999999999 99999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ...|++|+++... ..++.+.+++||+|++++| +.++|+. ..
T Consensus 176 ~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~avG----~~~~i~~---~~ 219 (285)
T PRK14189 176 MLL-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAVG----KRNVLTA---DM 219 (285)
T ss_pred HHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcCC----CcCccCH---HH
Confidence 998 6899999876432 1478899999999999998 3567887 45
Q ss_pred CCCCcEEEEcCCCcc
Q 016162 262 MKKEAILVNCSRGPV 276 (394)
Q Consensus 262 mk~gailIN~aRG~~ 276 (394)
+|+|+++||++.-.+
T Consensus 220 ik~gavVIDVGin~~ 234 (285)
T PRK14189 220 VKPGATVIDVGMNRD 234 (285)
T ss_pred cCCCCEEEEcccccc
Confidence 689999999986543
No 58
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.84 E-value=1.4e-07 Score=91.77 Aligned_cols=169 Identities=20% Similarity=0.214 Sum_probs=108.3
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccchh
Q 016162 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (394)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~~ 103 (394)
..++.|.+.+....++ ..+++|+.+.+. +..|+|++..+ ..+++. +++..+-. |=|- |+....+-
T Consensus 57 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g 129 (301)
T PRK14194 57 RAEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--KDVD----GFHSENVG 129 (301)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--hccC----ccChhhhh
Confidence 3455688877666554 357788777663 25689999865 345543 34443322 2110 11111111
Q ss_pred HHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hHHHHHHH
Q 016162 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (394)
Q Consensus 104 ~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (394)
.. ..+-+ .....++.-++.++- +.+.+++||+|+|||.| .||+.+|.
T Consensus 130 ~l------~~~~~-~~~PcTp~aii~lL~-------------------------~~~i~l~Gk~V~vIG~s~ivG~PmA~ 177 (301)
T PRK14194 130 GL------SQGRD-VLTPCTPSGCLRLLE-------------------------DTCGDLTGKHAVVIGRSNIVGKPMAA 177 (301)
T ss_pred HH------hcCCC-CCCCCcHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCccHHHHHH
Confidence 11 11112 234455555554331 12458999999999996 99999999
Q ss_pred HHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcC
Q 016162 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (394)
Q Consensus 183 ~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~m 262 (394)
+| ..-|++|++|+++. .++.++.++||+|+++++.. +++.+.. +
T Consensus 178 ~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~---i 221 (301)
T PRK14194 178 LL-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW---L 221 (301)
T ss_pred HH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---c
Confidence 98 67899999997642 36889999999999999843 3455554 7
Q ss_pred CCCcEEEEcCCCc
Q 016162 263 KKEAILVNCSRGP 275 (394)
Q Consensus 263 k~gailIN~aRG~ 275 (394)
|+|+++||+|...
T Consensus 222 k~GaiVIDvgin~ 234 (301)
T PRK14194 222 KPGAVVIDVGINR 234 (301)
T ss_pred cCCcEEEEecccc
Confidence 9999999998644
No 59
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.83 E-value=1.4e-07 Score=91.77 Aligned_cols=128 Identities=15% Similarity=0.125 Sum_probs=83.5
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhh---hhhhhcCCCCc--------cccccCCHHHHh
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG---QFLKANGEQPV--------TWKRASSMDEVL 234 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~l~ell 234 (394)
++|+|||.|.||..+|..+ ...|.+|++||++++... ...+... ....+.+.... ......++++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVF-AVSGFQTTLVDIKQEQLE-SAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHH-HhCCCcEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 5899999999999999998 467999999999876522 1111000 00000111000 012245788999
Q ss_pred cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016162 235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (394)
Q Consensus 235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gail-IN~aRG~~vde~aL~~aL~~g~l~gaalDV~ 299 (394)
++||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+ ..+.+.++. .-+..++..|
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 9999999999977766555445566778999877 78877444 556655542 2345677766
No 60
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.83 E-value=1.3e-08 Score=99.44 Aligned_cols=103 Identities=30% Similarity=0.427 Sum_probs=88.2
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
-+.||++.|.|||.+|+.+|.++ ++.|++|++.+-.+-..+++.++.| ....++|....+|+++
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDifi 269 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIFV 269 (420)
T ss_pred eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEEE
Confidence 57999999999999999999997 8999999999988877777766543 3467899999999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~ 284 (394)
.++ .++++|..+.|..||+|+++-|.+.-.+ ||-..|-+
T Consensus 270 T~T----GnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 270 TAT----GNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred Ecc----CCcCccCHHHHHhccCCeEEecccccceeccHHHHHH
Confidence 886 4688999999999999999999997665 66666553
No 61
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.82 E-value=1.3e-08 Score=99.01 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=85.1
Q ss_pred EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (394)
Q Consensus 170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~ 249 (394)
|||+|.||..+|+.| ...|.+|++|||+...... +...|. ....++.+++++||+|++|+|....
T Consensus 1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~~~---------l~~~g~-----~~~~s~~~~~~~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAVEE---------AVAAGA-----QAAASPAEAAEGADRVITMLPAGQH 65 (288)
T ss_pred CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHHHH---------HHHcCC-----eecCCHHHHHhcCCEEEEeCCChHH
Confidence 689999999999998 5779999999998765321 111221 2345889999999999999997677
Q ss_pred hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162 250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (394)
Q Consensus 250 t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD 297 (394)
...++. ...+..+++|.++||++...+-..+.+.+.+++..+. .+|
T Consensus 66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 777663 4566789999999999988877778888888765443 355
No 62
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.82 E-value=5.4e-08 Score=95.50 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=89.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
..++|+|||+|.||+.+|+.+ +..| .+|++||++...... . ...|.. .....++++.+++||+|+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~~~-a--------~~~g~~---~~~~~~~~~~~~~aDvVi 71 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETRAR-A--------RELGLG---DRVTTSAAEAVKGADLVI 71 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHHHH-H--------HhCCCC---ceecCCHHHHhcCCCEEE
Confidence 346899999999999999997 5556 489999998754211 1 111211 112346788899999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC----------Ccccc
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSE 311 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~----------~~L~~ 311 (394)
+|+|.. .+..++ ++....++++.++++++.... .+++++.... . ....+....|... .+|+.
T Consensus 72 iavp~~-~~~~v~-~~l~~~l~~~~iv~dvgs~k~----~~~~~~~~~~-~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~ 143 (307)
T PRK07502 72 LCVPVG-ASGAVA-AEIAPHLKPGAIVTDVGSVKA----SVIAAMAPHL-P-EGVHFIPGHPLAGTEHSGPDAGFAELFE 143 (307)
T ss_pred ECCCHH-HHHHHH-HHHHhhCCCCCEEEeCccchH----HHHHHHHHhC-C-CCCeEEeCCCCCCCcccchhhcCHHHHC
Confidence 999943 333333 455567899999999976442 2333333221 1 1122334445421 25777
Q ss_pred CCceEEcCCCCCCcHHHH
Q 016162 312 MKNAIVVPHIASASKWTR 329 (394)
Q Consensus 312 ~~nvilTPHia~~t~~~~ 329 (394)
..++++||+-+ .+.++.
T Consensus 144 g~~~~l~~~~~-~~~~~~ 160 (307)
T PRK07502 144 NRWCILTPPEG-TDPAAV 160 (307)
T ss_pred CCeEEEeCCCC-CCHHHH
Confidence 77899999744 344443
No 63
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.81 E-value=9.1e-08 Score=94.49 Aligned_cols=131 Identities=17% Similarity=0.195 Sum_probs=90.3
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCC----CccccccCCHHHHhcccCE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV 239 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~aDi 239 (394)
++|||||.|.||..+|..+ ...|++|++||+++..... .......+.+...+.. ........++++.++.||+
T Consensus 8 ~~VaVIGaG~MG~giA~~~-a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARA-LAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 6899999999999999997 4789999999998764211 1111111112222110 0112334689999999999
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (394)
Q Consensus 240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~ 300 (394)
|+-|+|-+.+.+.-+-++..+.++++++| .+++. .+...++.+.++. .-+..++-.|.
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~-p~R~~g~Hffn 144 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARATH-PERCVVGHPFN 144 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCC-cccEEEEecCC
Confidence 99999999998887778888999999854 44443 3466777877754 34566666553
No 64
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.80 E-value=2.1e-08 Score=98.72 Aligned_cols=98 Identities=26% Similarity=0.259 Sum_probs=70.0
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
|+||+|||||+|+||+++|+.| +.+|++|+++++......+.. ...|. . ..+..+++++||+|++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a--------~~~Gv-----~-~~s~~ea~~~ADiVvL 65 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKA--------TEDGF-----K-VGTVEEAIPQADLIMN 65 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHH--------HHCCC-----E-ECCHHHHHhcCCEEEE
Confidence 5799999999999999999998 688998877655433222211 11121 1 2468889999999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v 277 (394)
++|... ....+.++....++++. +|.++.|-.+
T Consensus 66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccH
Confidence 999432 34445566778888886 8888887654
No 65
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.80 E-value=8.2e-08 Score=92.96 Aligned_cols=136 Identities=24% Similarity=0.270 Sum_probs=89.5
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEE--EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH-HHHhcccCEEE
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS 241 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiV~ 241 (394)
-++|+|+|+|.||+++|+.+ +.-|..| +++|++....... ...++......+. .+.+..||+|+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence 46899999999999999997 6777765 5556655432221 1112222222233 67788899999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----ccccCCceEE
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----GLSEMKNAIV 317 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~----~L~~~~nvil 317 (394)
+++|- ..|..++ ++....+|+|++++|++.-+- ..+++++.- ..+-. .+..-+|+.-+ +++....+|+
T Consensus 70 vavPi-~~~~~~l-~~l~~~l~~g~iv~Dv~S~K~----~v~~a~~~~-~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vl 141 (279)
T COG0287 70 VAVPI-EATEEVL-KELAPHLKKGAIVTDVGSVKS----SVVEAMEKY-LPGDV-RFVGGHPMFGPEADAGLFENAVVVL 141 (279)
T ss_pred EeccH-HHHHHHH-HHhcccCCCCCEEEecccccH----HHHHHHHHh-ccCCC-eeEecCCCCCCcccccccCCCEEEE
Confidence 99993 4455554 455558999999999987443 234444432 12222 56677887543 7999899999
Q ss_pred cCCC
Q 016162 318 VPHI 321 (394)
Q Consensus 318 TPHi 321 (394)
||.=
T Consensus 142 tp~~ 145 (279)
T COG0287 142 TPSE 145 (279)
T ss_pred cCCC
Confidence 9963
No 66
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.79 E-value=1.9e-07 Score=91.06 Aligned_cols=117 Identities=25% Similarity=0.245 Sum_probs=77.9
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC-------cc-ccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP-------VT-WKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~-~~~~~~l~ell~ 235 (394)
++|||||+|.||..+|+.+ ...|++|++||++....... ..+...+.+...+... .. .....+. +.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLA-AAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred CEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 5899999999999999998 57799999999987653210 0000001111111100 00 0112344 5689
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLK 287 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~ 287 (394)
.||+|+.|+|.+++.+..+-.+....++++++|+ |+|.-. ...+.+.+.
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~ 132 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ 132 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence 9999999999999988877777777899999886 776643 445666554
No 67
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.77 E-value=4.2e-07 Score=88.34 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=95.0
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC---------ccccccCCHHHHh
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP---------VTWKRASSMDEVL 234 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~l~ell 234 (394)
++|+|||.|.||..+|..+ ...|.+|+.||++....... ..+.........+... .......++++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQT-AFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 5899999999999999997 46699999999987542111 1000000011111100 0112346888889
Q ss_pred cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCc
Q 016162 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314 (394)
Q Consensus 235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~n 314 (394)
+.||+|+.|+|...+.+.-+-++..+.++++++|+..+.+ +....+.+.+... -+..++..| .|.+.++.
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~-~r~vg~Hf~-------~p~~~~~l 152 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRP-EKFLALHFA-------NEIWKNNT 152 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCc-ccEEEEcCC-------CCCCcCCe
Confidence 9999999999966555544445566778999988543332 3445667666532 234554332 24556688
Q ss_pred eEEcCCCCCCcHHHHHHH
Q 016162 315 AIVVPHIASASKWTREGM 332 (394)
Q Consensus 315 vilTPHia~~t~~~~~~~ 332 (394)
|.+.|+- .++.++.+.+
T Consensus 153 vevv~~~-~t~~~~~~~~ 169 (287)
T PRK08293 153 AEIMGHP-GTDPEVFDTV 169 (287)
T ss_pred EEEeCCC-CCCHHHHHHH
Confidence 8888874 3455554443
No 68
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.72 E-value=2.3e-07 Score=93.61 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=94.9
Q ss_pred CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcC
Q 016162 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL 197 (394)
Q Consensus 119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~ 197 (394)
.....++-.+-.++..+|++.+ .. |.+. .....++|+||| +|.||+++|+.+ +..|..|++||+
T Consensus 66 l~~~~~~~i~~~i~~~s~~~q~------~~----~~~~----~~~~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~ 130 (374)
T PRK11199 66 VPPDLIEDVLRRVMRESYSSEN------DK----GFKT----LNPDLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQ 130 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHhH------Hh----cccc----cCcccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCC
Confidence 3445566677777777764421 11 2111 122458999999 999999999998 677999999997
Q ss_pred chhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162 198 YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (394)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v 277 (394)
... .++++++++||+|++|+|.. .+..++ ++... +++|+++++++.-+..
T Consensus 131 ~~~---------------------------~~~~~~~~~aDlVilavP~~-~~~~~~-~~l~~-l~~~~iv~Dv~SvK~~ 180 (374)
T PRK11199 131 DDW---------------------------DRAEDILADAGMVIVSVPIH-LTEEVI-ARLPP-LPEDCILVDLTSVKNA 180 (374)
T ss_pred Ccc---------------------------hhHHHHHhcCCEEEEeCcHH-HHHHHH-HHHhC-CCCCcEEEECCCccHH
Confidence 421 25567889999999999954 345555 33344 8999999999775432
Q ss_pred CHHHHHHHHHcCCcceEEeeccCCCCCCCC--ccccCCceEEcCC
Q 016162 278 DEVALVEHLKQNPMFRVGLDVFEDEPYMKP--GLSEMKNAIVVPH 320 (394)
Q Consensus 278 de~aL~~aL~~g~l~gaalDV~~~EP~~~~--~L~~~~nvilTPH 320 (394)
-.+++.+.+. + .+....|...+ ..+....++++|+
T Consensus 181 ~~~~~~~~~~-----~---~fvg~HPm~G~~~~~~~~~~vv~~~~ 217 (374)
T PRK11199 181 PLQAMLAAHS-----G---PVLGLHPMFGPDVGSLAKQVVVVCDG 217 (374)
T ss_pred HHHHHHHhCC-----C---CEEeeCCCCCCCCcccCCCEEEEcCC
Confidence 2233332211 1 23445665332 2344455777774
No 69
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.72 E-value=3.7e-07 Score=88.29 Aligned_cols=170 Identities=19% Similarity=0.252 Sum_probs=109.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++. .+++|+.+.+. ++.|+|++..+ ..+++. ++++.+-. |= +|.+--
T Consensus 55 k~~~~~Gi~~~~~~l~~~-~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KD-------VDGl~~ 124 (284)
T PRK14179 55 RSALAAGFKSEVVRLPET-ISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KD-------VDGFHP 124 (284)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccCH
Confidence 344567888877666543 57787776663 24689999865 344443 33333322 31 222210
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChHHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA 181 (394)
. ..|-...+.++ ....++.-++.++- +.+.++.||+++|||. |.+|+.+|
T Consensus 125 ~---N~g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~v~vIG~S~ivG~Pla 175 (284)
T PRK14179 125 M---NTGHLWSGRPV-MIPCTPAGIMEMFR-------------------------EYNVELEGKHAVVIGRSNIVGKPMA 175 (284)
T ss_pred h---hHHHHhCCCCC-CcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcCcHHHH
Confidence 0 01111222232 45566666554431 1245799999999999 99999999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
.+| ...|++|++|... ..++.+.+++||+|+.+++. .+++....
T Consensus 176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~----~~~v~~~~--- 219 (284)
T PRK14179 176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGR----GHFVTKEF--- 219 (284)
T ss_pred HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCc----cccCCHHH---
Confidence 998 5779999988321 13788999999999999984 33455544
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
+|+|+++||+|--.
T Consensus 220 ik~GavVIDvgin~ 233 (284)
T PRK14179 220 VKEGAVVIDVGMNR 233 (284)
T ss_pred ccCCcEEEEeccee
Confidence 79999999998544
No 70
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.71 E-value=6.9e-07 Score=87.04 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=107.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+++....++ ..+++|+.+.+. ++.|+|++..+ ..+++ .++++.+-. | -+|.+--
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--K-------DVDGl~~ 124 (296)
T PRK14188 55 KQTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--K-------DVDGLHV 124 (296)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--c-------ccccCCh
Confidence 34455688877665544 357788777663 14689999865 34554 344443322 2 1222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChHHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA 181 (394)
. ..|-...+.+ .....++.-++.++= +.+.++.||+++||| .|.+|+.+|
T Consensus 125 ~---n~g~l~~~~~-~~~PcTp~ai~~ll~-------------------------~~~i~~~Gk~V~viGrs~~mG~PmA 175 (296)
T PRK14188 125 V---NAGRLATGET-ALVPCTPLGCMMLLR-------------------------RVHGDLSGLNAVVIGRSNLVGKPMA 175 (296)
T ss_pred h---hHHHHhCCCC-CCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEEcCCcchHHHHH
Confidence 0 0111111222 244555655554331 123479999999999 999999999
Q ss_pred HHHHhcCCcEEEEEc-CchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162 182 RMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (394)
Q Consensus 182 ~~la~~~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~ 260 (394)
++| ..-|+.|++|+ ++ .++++++++||+|+++++... ++.+..
T Consensus 176 ~~L-~~~g~tVtv~~~rT-----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~-- 219 (296)
T PRK14188 176 QLL-LAANATVTIAHSRT-----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW-- 219 (296)
T ss_pred HHH-HhCCCEEEEECCCC-----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe--
Confidence 998 57799999995 32 257788999999999998533 454443
Q ss_pred cCCCCcEEEEcCCCc
Q 016162 261 TMKKEAILVNCSRGP 275 (394)
Q Consensus 261 ~mk~gailIN~aRG~ 275 (394)
+|+|+++||++--.
T Consensus 220 -lk~GavVIDvGin~ 233 (296)
T PRK14188 220 -IKPGATVIDVGINR 233 (296)
T ss_pred -ecCCCEEEEcCCcc
Confidence 79999999998644
No 71
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.71 E-value=6.2e-08 Score=78.21 Aligned_cols=92 Identities=26% Similarity=0.357 Sum_probs=62.4
Q ss_pred eEEEEecChHHHHHHHHHHhcCC---cEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
||||||+|+||+.+++.+ ...| .+|+ +++|+++... ++.+.| + ... ...+..|++++||+|++
T Consensus 1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~~-~~~~~~-------~---~~~-~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKAA-ELAKEY-------G---VQA-TADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHHH-HHHHHC-------T---TEE-ESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHHH-HHHHhh-------c---ccc-ccCChHHhhccCCEEEE
Confidence 699999999999999998 6778 8999 5588886532 222222 1 111 12378899999999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG 274 (394)
|+| |....-+-.+. ....++.++|++.-|
T Consensus 68 av~--p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVK--PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S---GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred EEC--HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 999 43332232333 556789999998654
No 72
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.71 E-value=1.5e-07 Score=96.49 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=90.4
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC-----------ccccccCCHHHHh
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----------VTWKRASSMDEVL 234 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~ell 234 (394)
.+|||||+|.||..+|..++ . |.+|++||++..+. +... .|..+ .+...+.+..+.+
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~v-e~l~---------~G~~~~~e~~~~~l~~~g~l~~t~~~~~~ 74 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKRI-LELK---------NGVDVNLETTEEELREARYLKFTSEIEKI 74 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHHH-HHHH---------CcCCCCCCCCHHHHHhhCCeeEEeCHHHH
Confidence 68999999999999999974 3 68999999987652 2211 12110 0001122334568
Q ss_pred cccCEEEEcCCCC------hhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCcceEEe-eccCCC
Q 016162 235 READVISLHPVLD------KTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRVGL-DVFEDE 302 (394)
Q Consensus 235 ~~aDiV~l~lPlt------~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL-~~--g~l~gaal-DV~~~E 302 (394)
++||++++|+|.. ++...++. +...+.+++|.++|+.|+-.+-..+.++..+ ++ |...+-.. =+|.+|
T Consensus 75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence 9999999999954 23345542 4556889999999999998888888765544 33 32111111 136668
Q ss_pred CCCC----CccccCCceE
Q 016162 303 PYMK----PGLSEMKNAI 316 (394)
Q Consensus 303 P~~~----~~L~~~~nvi 316 (394)
|+.. ..+...|.++
T Consensus 155 ~v~~G~a~~~~~~~~riv 172 (425)
T PRK15182 155 RINPGDKKHRLTNIKKIT 172 (425)
T ss_pred cCCCCcccccccCCCeEE
Confidence 8743 2466777775
No 73
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.70 E-value=3.8e-07 Score=84.26 Aligned_cols=110 Identities=20% Similarity=0.316 Sum_probs=79.3
Q ss_pred ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-ccC
Q 016162 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EAD 238 (394)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aD 238 (394)
+.+++||+++|+|+|+||+.+|+.| ..+|++|+++|++.... ..+.+.| + .. ..+.++++. +||
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~-------g-----~~-~v~~~~l~~~~~D 87 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELF-------G-----AT-VVAPEEIYSVDAD 87 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHc-------C-----CE-EEcchhhccccCC
Confidence 3579999999999999999999998 78999999999986532 2222211 1 11 123456654 799
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (394)
Q Consensus 239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l 291 (394)
+++.|.. .++|+++.+..|+ ..+++..+.+.+-| ..-.+.|++..+
T Consensus 88 v~vp~A~-----~~~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi 133 (200)
T cd01075 88 VFAPCAL-----GGVINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGI 133 (200)
T ss_pred EEEeccc-----ccccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCC
Confidence 9987765 4688999999997 45888888888766 334555665543
No 74
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.70 E-value=5e-08 Score=95.83 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=67.2
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
.+++|||||+|.+|+.+|++| ...|.+|.+|+|+.. .+++++++++|+|+++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 357899999999999999998 688999999998642 3678889999999999
Q ss_pred CCCChhhhhcccHHHHh-cCCCCcEEEEcCCCcc
Q 016162 244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV 276 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~-~mk~gailIN~aRG~~ 276 (394)
+|. .....+++. ... .+++++++|++++|-.
T Consensus 55 vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 55 VSM-KGVRPVAEQ-VQALNLPPETIIVTATKGLD 86 (308)
T ss_pred CCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCccc
Confidence 996 567776633 223 4789999999988543
No 75
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.70 E-value=2.1e-07 Score=95.18 Aligned_cols=109 Identities=23% Similarity=0.236 Sum_probs=75.7
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH------------
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------ 233 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el------------ 233 (394)
++|+|||+|.||..+|..| ...|.+|++||+++.... .. + .|..+. ....++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~L-a~~G~~V~~~D~~~~~v~-~l--------~-~g~~~~---~e~~l~~~l~~~~~~g~l~~ 69 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAF-ASRQKQVIGVDINQHAVD-TI--------N-RGEIHI---VEPDLDMVVKTAVEGGYLRA 69 (415)
T ss_pred cEEEEECcchhhHHHHHHH-HhCCCEEEEEeCCHHHHH-HH--------H-CCCCCc---CCCCHHHHHHHHhhcCceee
Confidence 6899999999999999998 577999999999876532 11 1 111111 01233333
Q ss_pred ---hcccCEEEEcCCCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162 234 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (394)
Q Consensus 234 ---l~~aDiV~l~lPlt------~~t~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (394)
++.||+|++|+|.. ++...+. -+.....+++|+++|+.|+-.+--.+.+...+.+
T Consensus 70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 34799999999953 1222222 2456677899999999999887778888776765
No 76
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.67 E-value=7.9e-07 Score=86.57 Aligned_cols=128 Identities=21% Similarity=0.236 Sum_probs=80.7
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhh---hhhhcCCCC--------ccccccCCHHHHh
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ---FLKANGEQP--------VTWKRASSMDEVL 234 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~l~ell 234 (394)
++|+|||.|.||..+|..+ ...|.+|++||++...... ..+.+.. .....+... .......+++ .+
T Consensus 5 ~kI~vIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVC-ALAGYDVLLNDVSADRLEA-GLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence 5899999999999999998 4679999999998764321 1111000 000112111 0012235665 47
Q ss_pred cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (394)
Q Consensus 235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~l~gaalDV~~ 300 (394)
++||+|+.|+|...+.+..+-.+..+.++++++++ |+|.-. ...|.+.+... -+..++..+.
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~ 144 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN 144 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC
Confidence 89999999999776655544456667789999998 665533 34677665432 2345666555
No 77
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.67 E-value=7.9e-07 Score=86.16 Aligned_cols=170 Identities=18% Similarity=0.273 Sum_probs=109.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++. .+++|+.+.+. ++.|+|++..+ ..+++. ++++.+-. |=|- |+....+
T Consensus 55 k~a~~~Gi~~~~~~l~~~-~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 127 (286)
T PRK14175 55 KAAEKIGMISEIVHLEET-ATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KDVD----GFHPINI 127 (286)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCCccch
Confidence 334556888877666543 47777776663 24689999865 345543 44444332 3111 1111111
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
|-...+.++ ....++.-++.++- +.+.+++||++.|||.|. +|+.+|
T Consensus 128 ------g~l~~~~~~-~~PcTp~ai~~ll~-------------------------~~~i~l~Gk~vvVIGrs~~VG~pla 175 (286)
T PRK14175 128 ------GKLYIDEQT-FVPCTPLGIMEILK-------------------------HADIDLEGKNAVVIGRSHIVGQPVS 175 (286)
T ss_pred ------HhHhcCCCC-CCCCcHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCchhHHHHH
Confidence 111112222 34445555544332 123479999999999999 999999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ...|++|+.++++. .++.+.+++||+|+.+++. .++|.++.
T Consensus 176 ~lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~--- 219 (286)
T PRK14175 176 KLL-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV--- 219 (286)
T ss_pred HHH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---
Confidence 998 68999999887531 3678889999999999983 44677765
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
+|+|+++||++-..
T Consensus 220 vk~gavVIDvGi~~ 233 (286)
T PRK14175 220 VKEGAVIIDVGNTP 233 (286)
T ss_pred cCCCcEEEEcCCCc
Confidence 58999999998644
No 78
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.66 E-value=7.2e-08 Score=85.26 Aligned_cols=96 Identities=31% Similarity=0.350 Sum_probs=64.5
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
|+||||.|||||..|..-|..| +.-|.+|++-.+..+...+. .+..| + ...+++|.+++||+|++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~--------A~~~G-----f-~v~~~~eAv~~aDvV~~ 66 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEK--------AKADG-----F-EVMSVAEAVKKADVVML 66 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHH--------HHHTT-------ECCEHHHHHHC-SEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHH--------HHHCC-----C-eeccHHHHHhhCCEEEE
Confidence 5799999999999999999998 78899999887766532211 12222 2 24689999999999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
.+|. .....++.++....||+|+.|+ .+.|-
T Consensus 67 L~PD-~~q~~vy~~~I~p~l~~G~~L~-fahGf 97 (165)
T PF07991_consen 67 LLPD-EVQPEVYEEEIAPNLKPGATLV-FAHGF 97 (165)
T ss_dssp -S-H-HHHHHHHHHHHHHHS-TT-EEE-ESSSH
T ss_pred eCCh-HHHHHHHHHHHHhhCCCCCEEE-eCCcc
Confidence 9993 3335566788888999998765 44543
No 79
>PLN02712 arogenate dehydrogenase
Probab=98.65 E-value=1e-07 Score=102.78 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=88.9
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV 240 (394)
.-+.++|||||+|+||+.+|+.+ +.+|.+|++||++...... ...|. ....++++++ .++|+|
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~A----------~~~Gv-----~~~~d~~e~~~~~aDvV 112 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLAA----------RSLGV-----SFFLDPHDLCERHPDVI 112 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH----------HHcCC-----EEeCCHHHHhhcCCCEE
Confidence 34456899999999999999998 6889999999997543211 11121 2245788866 569999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC-----ccccCCce
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP-----GLSEMKNA 315 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~-----~L~~~~nv 315 (394)
++|+|. ..+..++..-.+..++++++++|+++-+ ..+.++++... .-..++..-.|+..+ .+-..+ +
T Consensus 113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK----~~~~~~l~~~l--~~~~~~v~~HPMaG~e~~~~g~~~~~-~ 184 (667)
T PLN02712 113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK----EFAKNLLLDYL--PEDFDIICSHPMFGPQSAKHGWDGLR-F 184 (667)
T ss_pred EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc----HHHHHHHHHhc--CCCCeEEeeCCcCCCccccchhccCc-E
Confidence 999994 4677777654456799999999997544 22333443221 112245566776422 122333 7
Q ss_pred EEcCCCC
Q 016162 316 IVVPHIA 322 (394)
Q Consensus 316 ilTPHia 322 (394)
+++|.+.
T Consensus 185 ~~~~~~~ 191 (667)
T PLN02712 185 VYEKVRI 191 (667)
T ss_pred EEeeccC
Confidence 7777554
No 80
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.63 E-value=5.5e-08 Score=98.71 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=70.1
Q ss_pred CCCCCcc-cc-cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCc------hhhHHHHHHHhhhhhhhhcCCCCcc
Q 016162 152 GWLPNLF-VG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVT 223 (394)
Q Consensus 152 ~w~~~~~-~g-~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (394)
-|.+..| .+ ..|+||||+|||+|++|+.-|..| +..|.+|.+--|. ...... +...|
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~k---------A~~dG----- 85 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRK---------ATENG----- 85 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHHH---------HHhcC-----
Confidence 3655544 22 569999999999999999665554 4556655522111 111100 01112
Q ss_pred ccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 224 ~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
+ ...+++|++++||+|++.+|++ + ++.+.++.+..||+|++|. .|+|=
T Consensus 86 F-~v~~~~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF 133 (487)
T PRK05225 86 F-KVGTYEELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF 133 (487)
T ss_pred C-ccCCHHHHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence 2 2368999999999999999987 4 7777799999999999774 34443
No 81
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.63 E-value=1.3e-07 Score=95.40 Aligned_cols=103 Identities=18% Similarity=0.354 Sum_probs=74.7
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
.+.++++.|+|.|.+|+.+++.+ +++|++|.++|++.... +.....++. ..........++.+.++++|+|+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~~-~~l~~~~g~------~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDRL-RQLDAEFGG------RIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHhcCc------eeEeccCCHHHHHHHHccCCEEE
Confidence 36788999999999999999996 89999999999986542 221111110 00000111235678889999999
Q ss_pred EcCCCC-hhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 242 LHPVLD-KTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 242 l~lPlt-~~t~~li~~~~l~~mk~gailIN~a 272 (394)
.+++.+ ..+..+++++.++.||+++++||++
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 998542 2346689999999999999999987
No 82
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.61 E-value=1.1e-06 Score=84.97 Aligned_cols=129 Identities=19% Similarity=0.305 Sum_probs=80.5
Q ss_pred eEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
+|+|||+|.||+++|+.| ...| .+|++||++....... ...|.. ....+++++. +||+|++|+
T Consensus 2 ~I~iIG~G~mG~sla~~l-~~~g~~~~v~~~d~~~~~~~~~---------~~~g~~----~~~~~~~~~~-~aD~Vilav 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLAL-KEKGLISKVYGYDHNELHLKKA---------LELGLV----DEIVSFEELK-KCDVIFLAI 66 (275)
T ss_pred EEEEEccCHHHHHHHHHH-HhcCCCCEEEEEcCCHHHHHHH---------HHCCCC----cccCCHHHHh-cCCEEEEeC
Confidence 799999999999999998 4445 5899999987542211 111211 0123667765 499999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-------C---CccccCCc
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-------K---PGLSEMKN 314 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-------~---~~L~~~~n 314 (394)
|.. .+..++ .+... +++++++++++.- ...+.+.+.+. ..+ .+....|.. . ..|++-..
T Consensus 67 p~~-~~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~~-~~~---~~v~~hPmaG~e~~Gp~~a~~~l~~g~~ 135 (275)
T PRK08507 67 PVD-AIIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPKH-IRK---NFIAAHPMAGTENSGPKAAIKGLYEGKV 135 (275)
T ss_pred cHH-HHHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHHh-cCC---CEEecCCcCcCchhhHHhccHHHhCCCe
Confidence 943 344444 44556 8899999997552 34455555543 111 233345542 1 13566567
Q ss_pred eEEcCCC
Q 016162 315 AIVVPHI 321 (394)
Q Consensus 315 vilTPHi 321 (394)
++++|.-
T Consensus 136 ~il~~~~ 142 (275)
T PRK08507 136 VVLCDVE 142 (275)
T ss_pred EEEecCC
Confidence 8888853
No 83
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.59 E-value=7.5e-07 Score=85.37 Aligned_cols=103 Identities=30% Similarity=0.376 Sum_probs=72.6
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCc----EEEEE-cCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+|||||+|+||+.+++.| ..-|. +|++| ||+.... +.. ...| .....+..+++.+||+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L-~~~g~~~~~~i~v~~~r~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~aDvV 65 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGL-VASGVVPPSRISTADDSNPARR-DVF--------QSLG-----VKTAASNTEVVKSSDVI 65 (266)
T ss_pred CeEEEECCcHHHHHHHHHH-HHCCCCCcceEEEEeCCCHHHH-HHH--------HHcC-----CEEeCChHHHHhcCCEE
Confidence 3799999999999999998 45566 88999 8876542 211 1112 12345788889999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (394)
++|+| ......++ .+....++++.++|++.-| +..+.+.+.+.
T Consensus 66 il~v~-~~~~~~vl-~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 66 ILAVK-PQVVKDVL-TELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred EEEEC-cHHHHHHH-HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 99997 45566666 3455667899999988665 35666665543
No 84
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.59 E-value=2.7e-06 Score=82.87 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=85.1
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCCc--------cccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPV--------TWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~ 235 (394)
++|||||.|.||..+|..++ ..|.+|+.||++++.... +......+.+.+.|.... ......++ +.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA 83 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence 48999999999999999974 679999999999876322 111111111222222110 11124577 4589
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~m-k~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~ 300 (394)
.||+|+-|+|-+.+.+.-+-...-+.+ ++++++++.+.+-. ..++..++.. .-+..++..|.
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~--~~~la~~~~~-~~r~~g~hf~~ 146 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP--IMKLAAATKR-PGRVLGLHFFN 146 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC--HHHHHhhcCC-CccEEEEecCC
Confidence 999999999998888776655444545 89999988776554 4445555543 23456777665
No 85
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.58 E-value=2.3e-06 Score=82.87 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=80.7
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH--HHhhhhhhhhcCCCCc--------cccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VTAYGQFLKANGEQPV--------TWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~ 235 (394)
++|+|||.|.||..+|..+ ...|.+|++||+++....... .+...+.+.+.+.... ......+.++ ++
T Consensus 4 ~kI~VIG~G~mG~~ia~~l-a~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVC-AVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred cEEEEEccCHHHHHHHHHH-HHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 5899999999999999998 467999999999876532100 0000011112221110 1112345654 79
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~ 299 (394)
+||+|+.|+|.+.+.+.-+-++..+.++++++++....| +....|.+.+... -+..++..+
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~ 142 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFF 142 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeecc
Confidence 999999999977776644445566778999988544444 5566788777533 234444433
No 86
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.56 E-value=1.8e-07 Score=89.63 Aligned_cols=95 Identities=23% Similarity=0.438 Sum_probs=81.5
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
-+.||.+.|.|||.+|+..|+.| ++||+.|++....+-..+.+.++.| ....++|..++.|+++
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG~---------------~V~tm~ea~~e~difV 274 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEGY---------------EVTTLEEAIREVDIFV 274 (434)
T ss_pred eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhcc---------------EeeeHHHhhhcCCEEE
Confidence 46899999999999999999998 8999999999888776666655544 3568999999999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~ 276 (394)
.++ ..+.+|..+.|.+||+++++.|++.-.+
T Consensus 275 TtT----Gc~dii~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 275 TTT----GCKDIITGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred Ecc----CCcchhhHHHHHhCcCCcEEeccccccc
Confidence 775 4688899999999999999999987554
No 87
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.55 E-value=2.4e-06 Score=89.60 Aligned_cols=132 Identities=22% Similarity=0.274 Sum_probs=88.1
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCCc--------cccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPV--------TWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~ 235 (394)
++|||||.|.||+.+|..++ ..|.+|++||++++..... ..+...+.+...|.... ......++++ +.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~ 85 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LA 85 (507)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hC
Confidence 58999999999999999974 6699999999998753221 11111111122221100 1123457766 57
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gail-IN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP 303 (394)
+||+|+-++|.+.+.+..+-.+.-..+++++++ +|+|.-.+ ..|..++..- -+..++..|.+-|
T Consensus 86 ~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p-~r~~G~hff~Pa~ 150 (507)
T PRK08268 86 DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHP-ERVAGLHFFNPVP 150 (507)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCc-ccEEEEeecCCcc
Confidence 999999999988888877655555667899999 59987555 4677666542 2457777776443
No 88
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.55 E-value=7e-06 Score=85.51 Aligned_cols=227 Identities=20% Similarity=0.183 Sum_probs=121.4
Q ss_pred HHHHHHhCCCeEEEecCCC--CCCCHHHHHHH---h-----cCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCcc
Q 016162 29 WINLLIEQDCRVEICTQKK--TILSVEDIIAL---I-----GDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYN 98 (394)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~--~~~~~~el~~~---~-----~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d 98 (394)
..+.|.+.|+++.+..... ...+.++..+. + -+++|.|+. ... .+++-++.+.. |--+|+...-..|
T Consensus 21 ~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlk-V~~-P~~~e~~~l~~-g~tli~~l~p~~n 97 (511)
T TIGR00561 21 TVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILK-VNA-PSDAEIAELPA-GKALVSFIWPAQN 97 (511)
T ss_pred HHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEE-eCC-CCHHHHHhcCC-CCEEEEEcCccCC
Confidence 4567777788876654422 12333333320 0 013576652 222 23444666665 2244555444444
Q ss_pred ccchhHHhhCCceEecCCCCC--c--------hhhHHHHHHHHHHHHhchHHHHHHHHcCcc-CCCCCCcccccccCCCe
Q 016162 99 NVDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMRAGLY-DGWLPNLFVGNLLKGQT 167 (394)
Q Consensus 99 ~id~~~a~~~gI~v~n~p~~~--~--------~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~-~~w~~~~~~g~~l~gkt 167 (394)
.=-++.+.++||.+..--..- + .++|+.+= .|-...+.+.+ |++ .+- .-..| .+.+.+
T Consensus 98 ~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG------y~Avi~Aa~~l--gr~~~g~--~taag-~vp~ak 166 (511)
T TIGR00561 98 PELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG------YRAIIEAAHEF--GRFFTGQ--ITAAG-KVPPAK 166 (511)
T ss_pred HHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH------HHHHHHHHHHh--hhhcCCc--eecCC-CCCCCE
Confidence 334677788998887733211 1 12223222 11111111111 111 000 00112 355789
Q ss_pred EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhh---h--hcCCCCccccccCC----------HHH
Q 016162 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---K--ANGEQPVTWKRASS----------MDE 232 (394)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~----------l~e 232 (394)
+.|+|.|.+|...++.+ +++|++|+++|++... .+. .+.++... + ..+....++....+ +.+
T Consensus 167 VlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~r-le~-a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 167 VLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEV-KEQ-VQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHH-HHH-HHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 99999999999999985 8999999999998764 222 22222110 0 00000001111111 455
Q ss_pred HhcccCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 233 VLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 233 ll~~aDiV~l~l--Plt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
.++++|+|+.++ |..+ ...++.++.++.||+|+++||+|-
T Consensus 244 ~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 244 QAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 678899998776 4322 246889999999999999999964
No 89
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.53 E-value=5e-07 Score=87.47 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=73.1
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
+++|||||+|+||+.+++.|. .-| .+|+++||+.....+.+...| + .....+..+++.+||+|
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------g-----~~~~~~~~e~~~~aDvV 69 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY-------G-----VKGTHNKKELLTDANIL 69 (279)
T ss_pred CCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc-------C-----ceEeCCHHHHHhcCCEE
Confidence 468999999999999999984 444 689999987644333322222 1 12235788889999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (394)
++|+|. ......+ .+....++++.++|++.-|- ..+.|.+.+.
T Consensus 70 ilav~p-~~~~~vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 70 FLAMKP-KDVAEAL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred EEEeCH-HHHHHHH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 999993 3444444 44455678899999986543 4556666553
No 90
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.52 E-value=7.4e-07 Score=97.49 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=91.0
Q ss_pred CeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
++|+|||+|+||+.+++.+ +..| .+|++||++....... ...|.. .....++++.++++|+|++|
T Consensus 4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~~a---------~~~g~~---~~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLELA---------VSLGVI---DRGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHHHH---------HHCCCC---CcccCCHHHHhcCCCEEEEC
Confidence 6899999999999999997 5666 5899999987542211 111211 11234688889999999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------CCccccCC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK 313 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~----------~~~L~~~~ 313 (394)
+|.. ....++ ++....++++.++++++.-+..-.+.+.+.+.. ....+..+.|.. ++.|+...
T Consensus 71 vp~~-~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~-----~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~ 143 (735)
T PRK14806 71 VPVL-AMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGE-----LPAGFVPGHPIAGSEKSGVHAANADLFRNH 143 (735)
T ss_pred CCHH-HHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccc-----cCCeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence 9943 344444 334456788999999987543223444444332 124455667753 12578888
Q ss_pred ceEEcCCCCC
Q 016162 314 NAIVVPHIAS 323 (394)
Q Consensus 314 nvilTPHia~ 323 (394)
++++||+-.+
T Consensus 144 ~~~~~~~~~~ 153 (735)
T PRK14806 144 KVILTPLAET 153 (735)
T ss_pred eEEEECCCCC
Confidence 9999997543
No 91
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.49 E-value=1.6e-06 Score=75.85 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=77.1
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
++.+++++|+|.|.||+.+++.+ ...| .+|.++|++.... ++..+.+. .... .....+++++++++|+|
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~-~~~~~~~~-------~~~~-~~~~~~~~~~~~~~Dvv 85 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKA-KALAERFG-------ELGI-AIAYLDLEELLAEADLI 85 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHh-------hccc-ceeecchhhccccCCEE
Confidence 46789999999999999999998 4564 7899999987543 22222211 1000 01234677888999999
Q ss_pred EEcCCCChh-hh-hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162 241 SLHPVLDKT-TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (394)
Q Consensus 241 ~l~lPlt~~-t~-~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~ 290 (394)
++|+|.... .. ..+.. ..++++.+++|++..+.. + .|.+.+++..
T Consensus 86 i~~~~~~~~~~~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g 132 (155)
T cd01065 86 INTTPVGMKPGDELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALG 132 (155)
T ss_pred EeCcCCCCCCCCCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence 999996653 11 22332 236899999999876543 3 7777777653
No 92
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.49 E-value=6.8e-07 Score=86.38 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=77.9
Q ss_pred CCCeEEEEecChHHHHHHHHHHhc-CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
...+|||||+|.||+.+++.+.+. .++++. ++|+++... +++.+.| +. ...+.++++++.++|+|+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vv 72 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVV 72 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEE
Confidence 347999999999999999998443 578876 778876542 2222221 11 112468999999999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l 291 (394)
+|+|... ..-+. ...++.|.-++..++|.+.+.++|.++.+++..
T Consensus 73 i~tp~~~--h~e~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~ 117 (271)
T PRK13302 73 EAAPASV--LRAIV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG 117 (271)
T ss_pred ECCCcHH--HHHHH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence 9999432 22222 333466777777889988889999998888654
No 93
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.48 E-value=5e-06 Score=80.51 Aligned_cols=169 Identities=16% Similarity=0.205 Sum_probs=108.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|++.+....++ ..+++|+.+.+. ++.|+|++..+ ..+++. ++++.+-. |= +|.+--
T Consensus 61 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~ 130 (287)
T PRK14176 61 KACERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--KD-------ADGFHP 130 (287)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence 33455788887766654 357777776663 25689999865 344443 34444322 31 222210
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
...|-...+.+ .....++.-++.++= +.+.+++||++.|||.|. +|+.+|
T Consensus 131 ---~N~g~l~~g~~-~~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrs~iVGkPla 181 (287)
T PRK14176 131 ---YNMGKLMIGDE-GLVPCTPHGVIRALE-------------------------EYGVDIEGKNAVIVGHSNVVGKPMA 181 (287)
T ss_pred ---hhhhhHhcCCC-CCCCCcHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCcccHHHHH
Confidence 01111122222 244556665554431 123579999999999999 999999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ...|++|+.++.. ..++.+..++||+|+.++.- .+++..+ .
T Consensus 182 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvv~AvG~----p~~i~~~---~ 225 (287)
T PRK14176 182 AML-LNRNATVSVCHVF----------------------------TDDLKKYTLDADILVVATGV----KHLIKAD---M 225 (287)
T ss_pred HHH-HHCCCEEEEEecc----------------------------CCCHHHHHhhCCEEEEccCC----ccccCHH---H
Confidence 998 6889999887642 13788899999999998752 3467666 4
Q ss_pred CCCCcEEEEcCCC
Q 016162 262 MKKEAILVNCSRG 274 (394)
Q Consensus 262 mk~gailIN~aRG 274 (394)
+|+|+++||++--
T Consensus 226 vk~gavVIDvGin 238 (287)
T PRK14176 226 VKEGAVIFDVGIT 238 (287)
T ss_pred cCCCcEEEEeccc
Confidence 5899999999853
No 94
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.47 E-value=4.6e-06 Score=81.95 Aligned_cols=120 Identities=22% Similarity=0.213 Sum_probs=71.8
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~ 235 (394)
++|+|||.|.||.++|..+ ...|.+|++||++....... ..+.....+...|... .......++++.++
T Consensus 3 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVF-ARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred cEEEEECccHHHHHHHHHH-HHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 4799999999999999998 56799999999987542110 0000000111122110 00123468889999
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (394)
.||+|+.|+|...+....+-.+.-+..+++.++ ..+.. ......+.+.+..
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii-~ssts-~~~~~~la~~~~~ 132 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAIL-ASSTS-ALLASAFTEHLAG 132 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceE-EEeCC-CCCHHHHHHhcCC
Confidence 999999999976544433323322334555544 43333 3446677777754
No 95
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.47 E-value=8.3e-06 Score=78.96 Aligned_cols=170 Identities=17% Similarity=0.158 Sum_probs=106.4
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+. ++.|+|++..+ ..+++ +++++.+-. |= +|.+--
T Consensus 56 k~a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KD-------VDGl~~ 125 (285)
T PRK10792 56 KACEEVGFVSRSYDLPE-TTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD--KD-------VDGFHP 125 (285)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------cCccCh
Confidence 34455788877666654 357788776663 14689999865 34443 334443322 21 222210
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
. ..|-...+.++ ....++.-++-++- +.+.+++||++.|||.|. +|+.+|
T Consensus 126 ~---n~g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrs~iVG~Pla 176 (285)
T PRK10792 126 Y---NVGRLAQRIPL-LRPCTPRGIMTLLE-------------------------RYGIDTYGLNAVVVGASNIVGRPMS 176 (285)
T ss_pred h---hHhHHhCCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCcccHHHHH
Confidence 0 00101111122 33445555443331 123579999999999999 999999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ...|++|+.++.+ ..++++.+++||+|+.+++. .+++..+ .
T Consensus 177 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvi~avG~----p~~v~~~---~ 220 (285)
T PRK10792 177 LEL-LLAGCTVTVCHRF----------------------------TKNLRHHVRNADLLVVAVGK----PGFIPGE---W 220 (285)
T ss_pred HHH-HHCCCeEEEEECC----------------------------CCCHHHHHhhCCEEEEcCCC----cccccHH---H
Confidence 998 6889999987642 13788999999999999952 2356664 4
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
+|+|+++||++--.
T Consensus 221 vk~gavVIDvGin~ 234 (285)
T PRK10792 221 IKPGAIVIDVGINR 234 (285)
T ss_pred cCCCcEEEEccccc
Confidence 58999999998533
No 96
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.46 E-value=5.4e-06 Score=80.02 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=110.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+. +..|+|++..+ ..+++ .++++.+-. | -+|.+--
T Consensus 49 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--K-------DVDGl~~ 118 (279)
T PRK14178 49 RACERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--K-------DVDGFHP 118 (279)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence 33455688887666554 357788777663 24689999865 44554 344444332 3 1222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hHHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA 181 (394)
. ..|-...+.++ ....++.-++.++= +.+.+++|+++.|+|.+ ..|+.+|
T Consensus 119 ~---n~g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~V~ViGrs~~vGrpla 169 (279)
T PRK14178 119 L---NLGRLVSGLPG-FAPCTPNGIMTLLH-------------------------EYKISIAGKRAVVVGRSIDVGRPMA 169 (279)
T ss_pred h---hHHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCccccHHHH
Confidence 0 01111122232 44556665554431 12357999999999999 9999999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..+ ..+|++|+.+..+. .++.+.+++||+|+.+++. .+++.++.+
T Consensus 170 ~lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk----~~lv~~~~v-- 214 (279)
T PRK14178 170 ALL-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGK----AGFITPDMV-- 214 (279)
T ss_pred HHH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCc----ccccCHHHc--
Confidence 997 78999998876432 3678889999999999972 267888875
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
|+|+++||+|-..
T Consensus 215 -k~GavVIDVgi~~ 227 (279)
T PRK14178 215 -KPGATVIDVGINQ 227 (279)
T ss_pred -CCCcEEEEeeccc
Confidence 9999999998544
No 97
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.45 E-value=3.7e-06 Score=85.93 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=76.2
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhh--------hhhhhcCCCCccccccCCHHHHhcccC
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (394)
+|||||+|.||..+|..| ...|.+|++||++...... ...... ..+.+.-..+ ......++++++++||
T Consensus 2 kI~vIGlG~~G~~lA~~L-a~~G~~V~~~d~~~~~v~~-l~~g~~~~~e~~l~~~~~~~~~~g-~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALL-ADLGHEVTGVDIDQEKVDK-LNKGKSPIYEPGLDELLAKALAAG-RLRATTDYEDAIRDAD 78 (411)
T ss_pred EEEEECCCchhHHHHHHH-HhcCCeEEEEECCHHHHHH-hhcCCCCCCCCCHHHHHHHhhhcC-CeEEECCHHHHHhhCC
Confidence 799999999999999998 4779999999998764321 111000 0000000000 0123357888899999
Q ss_pred EEEEcCCCChh------hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHH-HHHc
Q 016162 239 VISLHPVLDKT------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVE-HLKQ 288 (394)
Q Consensus 239 iV~l~lPlt~~------t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~-aL~~ 288 (394)
+|++|+|.... ...+.. ....+.+++|.++|+.|+-.+-..+.+.. .+++
T Consensus 79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 99999995432 112221 34566789999999999766666667764 4444
No 98
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.45 E-value=1.6e-06 Score=85.74 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=76.2
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-CCccccccCCHHHHhcccCEEEEc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
..+|+|||.|.||..+|.+| ...|.+|.+|+|+.... +.....-.......+. .........++++.++.+|+|+++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L-~~~G~~V~~~~r~~~~~-~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLA-ASKGVPVRLWARRPEFA-AALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 35899999999999999998 46799999999976542 1111100000000010 000122345888889999999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ 288 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG-~~vd--e~aL~~aL~~ 288 (394)
+|.. .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 82 v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 82 VPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred CchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 9954 22 5566888999999999997 4332 4566666654
No 99
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.43 E-value=6.5e-07 Score=77.42 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=73.7
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
+++|+++.|||.|.+|+.++..| ...|++ |++++|+..+. ++..+.+ +........+.++.+.+.++|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~ra-~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPERA-EALAEEF-------GGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHHH-HHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHHH-HHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence 78999999999999999999998 677986 99999987652 2222222 11222233456788889999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCc-EEEEcCCCcccC
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPVID 278 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~ga-ilIN~aRG~~vd 278 (394)
+.++|.. ...+.++.+...++.. +++|.|...-||
T Consensus 80 I~aT~~~---~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 80 INATPSG---MPIITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp EE-SSTT---STSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred EEecCCC---CcccCHHHHHHHHhhhhceeccccCCCCC
Confidence 9999843 3378888887666544 888887654443
No 100
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.43 E-value=6.2e-06 Score=79.80 Aligned_cols=170 Identities=17% Similarity=0.207 Sum_probs=109.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++. .+++|+.+.+. +..|+|++..+ ..+++. ++++.+-. | -+|.+.-
T Consensus 54 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~ 123 (285)
T PRK14191 54 KACERVGMDSDLHTLQEN-TTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--K-------DVDGFHP 123 (285)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCh
Confidence 334556888877666543 46777776653 24689999865 345543 34443322 3 1222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hHHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA 181 (394)
. ..|-...+.+ .....++.-++.++= +.+.++.||++.|||-| .+|+.+|
T Consensus 124 ~---n~g~l~~g~~-~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvVvGrs~~VG~Pla 174 (285)
T PRK14191 124 L---NIGKLCSQLD-GFVPATPMGVMRLLK-------------------------HYHIEIKGKDVVIIGASNIVGKPLA 174 (285)
T ss_pred h---hHHHHhcCCC-CCCCCcHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCchhHHHHH
Confidence 0 0111122222 245566666654431 12357999999999999 9999999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ...|++|++++... .++.+.+++||+|+.+++ ..+++..+.+
T Consensus 175 ~lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG----~p~~i~~~~v-- 219 (285)
T PRK14191 175 MLM-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVG----KPDLIKASMV-- 219 (285)
T ss_pred HHH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecC----CCCcCCHHHc--
Confidence 998 67899998874321 357788999999999996 3556777766
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
|+|+++||++-..
T Consensus 220 -k~GavVIDvGi~~ 232 (285)
T PRK14191 220 -KKGAVVVDIGINR 232 (285)
T ss_pred -CCCcEEEEeeccc
Confidence 8999999998644
No 101
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.43 E-value=1e-06 Score=79.12 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=68.1
Q ss_pred cccCCCeEEEEecChH-HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 161 ~~l~gktvGIIGlG~I-G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
.++.|+++.|||.|.+ |..+|+.| ...|++|++.+|+. .++.+.+.+||+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi 90 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI 90 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence 3689999999999996 88899998 68899999988753 256678999999
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016162 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (394)
Q Consensus 240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 278 (394)
|+.+++.. ++|..+. ++++.++||+|...-+|
T Consensus 91 VIsat~~~----~ii~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 91 VIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred EEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence 99999832 2688875 47899999999888777
No 102
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.42 E-value=9e-06 Score=85.15 Aligned_cols=133 Identities=20% Similarity=0.233 Sum_probs=87.8
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (394)
=++|||||.|.||+.||..++ ..|.+|++||++++..... ..+...+.+...|... .......++++ +
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l 82 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-L 82 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence 358999999999999999984 6799999999997653211 1111101111222111 01123457766 5
Q ss_pred cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (394)
Q Consensus 235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP 303 (394)
++||+|+-|+|.+.+.+..+-.+.-..++++++|. |+|.-. ...|.+++.. ..+..++..|.+-|
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~---i~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS---ITAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC---HHHHHHhcCc-ccceEEEeccCccc
Confidence 79999999999888877766555556788888876 776644 3567777754 34678888776444
No 103
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.39 E-value=1.4e-05 Score=78.47 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=71.1
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHh----hhhhhhhcCCC---CccccccCCHHHHhcccC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ---PVTWKRASSMDEVLREAD 238 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~l~ell~~aD 238 (394)
++|+|||.|.||..+|..+ ...|.+|++||++..... ...+. .+. ....+.. ........++++.+++||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l-~~~g~~V~~~d~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~aD 81 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALF-ARKGLQVVLIDVMEGALE-RARGVIERALGV-YAPLGIASAGMGRIRMEAGLAAAVSGAD 81 (311)
T ss_pred cEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHH-HHHHHHHHHHHH-hhhcccHHHHhhceEEeCCHHHHhccCC
Confidence 5899999999999999998 567999999999875422 11110 100 0000000 000122357888899999
Q ss_pred EEEEcCCCChhh-hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162 239 VISLHPVLDKTT-YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (394)
Q Consensus 239 iV~l~lPlt~~t-~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (394)
+|++|+|...+. ..++ .+.-..++++++++..+.| +....|.+.+.
T Consensus 82 lVi~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 82 LVIEAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EEEEeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 999999966543 3343 3333446777776544433 23557777664
No 104
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.39 E-value=1.7e-05 Score=77.15 Aligned_cols=130 Identities=19% Similarity=0.296 Sum_probs=80.8
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHh--hh-hhhhhcCCCC--------ccccccCCHHH
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTA--YG-QFLKANGEQP--------VTWKRASSMDE 232 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~--~~-~~~~~~~~~~--------~~~~~~~~l~e 232 (394)
++|+|||.|.||..+|..+ ...|.+|++||++....... .... |+ ..+...+... .......++ +
T Consensus 4 ~~I~ViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVF-ARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred cEEEEECccHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 5899999999999999997 57799999999987653210 0000 00 0000111110 001122355 5
Q ss_pred HhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (394)
Q Consensus 233 ll~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~ 300 (394)
.+++||+|+.++|...+...-+-++.-+.+++++++++.+.| +....+.+.+.. .-+..++..|.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~ 146 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFN 146 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence 679999999999966554443434455668899999877766 355667776653 23456666554
No 105
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.38 E-value=9.1e-06 Score=85.08 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=75.4
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhh---hhhcCCCCc-cccccCCHHHHhcccCE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQF---LKANGEQPV-TWKRASSMDEVLREADV 239 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~---~~~~~~~~~-~~~~~~~l~ell~~aDi 239 (394)
++|||||.|.||..+|..++ ..|.+|++||+++..... +..+..... +........ ......++++.+++||+
T Consensus 5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 48999999999999999984 669999999998765321 100000000 000000000 12234688899999999
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (394)
Q Consensus 240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (394)
|+.++|...+.+..+-++.-+.++++++| .+++.++ ....|.+.+..
T Consensus 84 Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 84 IQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 99999977665654434455567778654 5555443 35577766644
No 106
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.37 E-value=1.9e-06 Score=84.74 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=70.4
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
++|+|||+|.||..+|..| ...|.+|.+||+++... +..... +........ ...+.....++++.++.+|+|++|
T Consensus 2 mkI~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVL-ARNGHDVTLWARDPEQA-AEINAD-RENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHc-CcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 4799999999999999998 46789999999976542 111110 000000000 000122345788889999999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v 277 (394)
+|. ..+..++ .+....+++++++|+++.|-..
T Consensus 79 v~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 79 VPS-QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred CCH-HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 995 4555555 3455667899999999865443
No 107
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.37 E-value=1.1e-06 Score=85.03 Aligned_cols=103 Identities=21% Similarity=0.297 Sum_probs=71.6
Q ss_pred CeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
++|||||+|+||+++++.|. .-| .+|+++||+.... +...+.| | .....+..+++.+||+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~~-~~l~~~~-------g-----~~~~~~~~e~~~~aDiIi 68 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSNL-KNASDKY-------G-----ITITTNNNEVANSADILI 68 (272)
T ss_pred CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHHH-HHHHHhc-------C-----cEEeCCcHHHHhhCCEEE
Confidence 48999999999999999874 434 3799999987542 2211111 2 122357788899999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 286 (394)
+|+|. .....++ ++.-..++++.++|++.-|-. .+.|-+.+
T Consensus 69 LavkP-~~~~~vl-~~l~~~~~~~~lvISi~AGi~--i~~l~~~l 109 (272)
T PRK12491 69 LSIKP-DLYSSVI-NQIKDQIKNDVIVVTIAAGKS--IKSTENEF 109 (272)
T ss_pred EEeCh-HHHHHHH-HHHHHhhcCCcEEEEeCCCCc--HHHHHHhc
Confidence 99993 5555555 344455688899999987754 44555544
No 108
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.37 E-value=5.8e-06 Score=83.91 Aligned_cols=137 Identities=15% Similarity=0.236 Sum_probs=86.0
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhh--------hhhhhhcCCCCccccccCCHHHHhcccC
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (394)
+|+|||+|.||..+|..++ .|.+|++||++.... +...+.. ...+... ........+..+.++.||
T Consensus 2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~~e~~l~~~l~~~---~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPIVDKEIQQFLQSD---KIHFNATLDKNEAYRDAD 75 (388)
T ss_pred EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCCCCcCHHHHHHhC---CCcEEEecchhhhhcCCC
Confidence 7999999999999997763 489999999988653 2211100 0000001 111222234678889999
Q ss_pred EEEEcCCCChhh-------hhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC---
Q 016162 239 VISLHPVLDKTT-------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--- 306 (394)
Q Consensus 239 iV~l~lPlt~~t-------~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~--- 306 (394)
+|++|+|...+- ..+.. +...+ +++|.++|+.|+-.+=-++.+.+.+.+.. . +|.+|.+.+
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~---v---~~~PE~l~~G~a 148 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTEN---I---IFSPEFLREGKA 148 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCc---E---EECcccccCCcc
Confidence 999999954111 11111 23333 79999999999988888888888776532 2 246666532
Q ss_pred -CccccCCceE
Q 016162 307 -PGLSEMKNAI 316 (394)
Q Consensus 307 -~~L~~~~nvi 316 (394)
..++..|.|+
T Consensus 149 ~~d~~~p~rvv 159 (388)
T PRK15057 149 LYDNLHPSRIV 159 (388)
T ss_pred cccccCCCEEE
Confidence 2455555665
No 109
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.36 E-value=5.4e-06 Score=75.31 Aligned_cols=144 Identities=20% Similarity=0.234 Sum_probs=86.1
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCC--------ccccccCCHHHHhcc
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLRE 236 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~~ 236 (394)
+|+|||.|.||+.+|..++ ..|++|..||++...... +....+.+.+.+.+... .......+++++. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 6999999999999999974 679999999998875321 22222111222222211 1122346888877 9
Q ss_pred cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceE
Q 016162 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI 316 (394)
Q Consensus 237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvi 316 (394)
||+|+=++|-+.+.+.-+-++.-+.++++++|...+.+ +.-..|..++.. .-+..++-.|. |....||.+ |+
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~~--P~~~~~lVE---vv 150 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFFN--PPHLMPLVE---VV 150 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-S--STTT--EEE---EE
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEeccc--ccccCceEE---Ee
Confidence 99999999987777766666777788999998665443 445667777653 44677777774 332234554 55
Q ss_pred EcCC
Q 016162 317 VVPH 320 (394)
Q Consensus 317 lTPH 320 (394)
-.|+
T Consensus 151 ~~~~ 154 (180)
T PF02737_consen 151 PGPK 154 (180)
T ss_dssp E-TT
T ss_pred CCCC
Confidence 5554
No 110
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.35 E-value=2.3e-05 Score=75.76 Aligned_cols=170 Identities=16% Similarity=0.234 Sum_probs=108.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+. +..|+|++..+ ..+++. ++++.+-. |= +|.+.-
T Consensus 54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~p 123 (284)
T PRK14170 54 KRTEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--KD-------VDGFHP 123 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence 33455688887766654 346777776663 24689999865 345443 44444332 31 222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
.. .|-.....+ .....++.-++.++- +.|.++.||++.|||-+. +|+.+|
T Consensus 124 ~N---~g~l~~~~~-~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvVvGrS~iVGkPla 174 (284)
T PRK14170 124 VN---VGNLFIGKD-SFVPCTPAGIIELIK-------------------------STGTQIEGKRAVVIGRSNIVGKPVA 174 (284)
T ss_pred hh---hhHHhCCCC-CCCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 00 111111222 245566666654441 134689999999999986 599999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.+... ..++.+.+++||+|+.+++. .+++..+.+
T Consensus 175 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----~~~i~~~~v-- 219 (284)
T PRK14170 175 QLL-LNENATVTIAHSR----------------------------TKDLPQVAKEADILVVATGL----AKFVKKDYI-- 219 (284)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence 998 6779999877432 14788999999999999872 456777666
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
|+|+++||++.-.
T Consensus 220 -k~GavVIDvGin~ 232 (284)
T PRK14170 220 -KPGAIVIDVGMDR 232 (284)
T ss_pred -CCCCEEEEccCcc
Confidence 7999999998654
No 111
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.32 E-value=1.9e-05 Score=76.31 Aligned_cols=169 Identities=18% Similarity=0.206 Sum_probs=107.2
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccchh
Q 016162 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (394)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~~ 103 (394)
..++.|.+.+....++. .+++|+.+.+. ++.|+|++..+ ..+++. ++++.+.. |= +|.+.-.
T Consensus 55 ~a~~~Gi~~~~~~l~~~-~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~~ 124 (281)
T PRK14183 55 ACDRVGIYSITHEMPST-ISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--KD-------VDGFHPY 124 (281)
T ss_pred HHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--hc-------ccccChh
Confidence 34556888776665543 47777776653 24689999865 345543 44444332 31 2222100
Q ss_pred HHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hHHHHHHH
Q 016162 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (394)
Q Consensus 104 ~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (394)
..|-...+.+ .....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|.
T Consensus 125 ---n~g~l~~g~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~~VG~Pla~ 175 (281)
T PRK14183 125 ---NVGRLVTGLD-GFVPCTPLGVMELL----E---------------------EYEIDVKGKDVCVVGASNIVGKPMAA 175 (281)
T ss_pred ---hhhHHhcCCC-CCCCCcHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCcchHHHHH
Confidence 0111111122 23455565554333 1 12358999999999999 88999999
Q ss_pred HHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcC
Q 016162 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (394)
Q Consensus 183 ~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~m 262 (394)
+| ..-|++|+..... ..++.+..++||+|+.++. ..+++..+.+
T Consensus 176 lL-~~~~AtVti~hs~----------------------------T~~l~~~~~~ADIvV~AvG----kp~~i~~~~v--- 219 (281)
T PRK14183 176 LL-LNANATVDICHIF----------------------------TKDLKAHTKKADIVIVGVG----KPNLITEDMV--- 219 (281)
T ss_pred HH-HHCCCEEEEeCCC----------------------------CcCHHHHHhhCCEEEEecC----cccccCHHHc---
Confidence 98 6779999866431 1368899999999999986 2556777666
Q ss_pred CCCcEEEEcCCCc
Q 016162 263 KKEAILVNCSRGP 275 (394)
Q Consensus 263 k~gailIN~aRG~ 275 (394)
|+|+++||++--.
T Consensus 220 k~gavvIDvGin~ 232 (281)
T PRK14183 220 KEGAIVIDIGINR 232 (281)
T ss_pred CCCcEEEEeeccc
Confidence 7999999998543
No 112
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.31 E-value=5.7e-06 Score=80.12 Aligned_cols=105 Identities=16% Similarity=0.246 Sum_probs=70.1
Q ss_pred CeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
.+|+|||+|+||+.+++.+ ...| .+|++|+++...........| + . .....+..+++.++|+|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L-~~~g~~~~~~V~~~~r~~~~~~~~l~~~~-------~--~--~~~~~~~~e~~~~aDvVi 69 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKL-LETEVATPEEIILYSSSKNEHFNQLYDKY-------P--T--VELADNEAEIFTKCDHSF 69 (277)
T ss_pred CEEEEECccHHHHHHHHHH-HHCCCCCcccEEEEeCCcHHHHHHHHHHc-------C--C--eEEeCCHHHHHhhCCEEE
Confidence 4799999999999999997 4445 689999986543322211111 0 0 112357788899999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 286 (394)
+|+|. .....++ .+....++++..+|.+.-| +..+.|-+.+
T Consensus 70 lavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~ 110 (277)
T PRK06928 70 ICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEIT 110 (277)
T ss_pred EecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHc
Confidence 99992 2333333 3333456788899998877 5556666655
No 113
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.29 E-value=4.2e-05 Score=73.83 Aligned_cols=170 Identities=17% Similarity=0.231 Sum_probs=107.7
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+++....++ ..+++|+.+.+. ++.|+|++..+ ..+++. ++++.+-. |= +|.+--
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KD-------VDGl~~ 124 (278)
T PRK14172 55 KVANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN--KD-------IDCLTF 124 (278)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------cCccCH
Confidence 33455688887766654 357787776663 24689999865 345443 44444332 31 222210
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
. ..|-....-++ ....++.-++.++ + +.+.+++||++.|||-+. +|+.+|
T Consensus 125 ~---n~g~l~~g~~~-~~PcTp~av~~lL----~---------------------~~~i~l~Gk~vvViGrS~~VGkPla 175 (278)
T PRK14172 125 I---SVGKFYKGEKC-FLPCTPNSVITLI----K---------------------SLNIDIEGKEVVVIGRSNIVGKPVA 175 (278)
T ss_pred h---hHHHHhCCCCC-CcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence 0 01111111222 3445555555433 1 123579999999999875 699999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.++.. ..++.+..++||+|+.+++. .++|..+.+
T Consensus 176 ~lL-~~~~AtVt~chs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~i-- 220 (278)
T PRK14172 176 QLL-LNENATVTICHSK----------------------------TKNLKEVCKKADILVVAIGR----PKFIDEEYV-- 220 (278)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHHc--
Confidence 998 6789999887542 13788999999999999973 456877765
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
|+|+++||++--.
T Consensus 221 -k~gavVIDvGin~ 233 (278)
T PRK14172 221 -KEGAIVIDVGTSS 233 (278)
T ss_pred -CCCcEEEEeeccc
Confidence 8999999997533
No 114
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.27 E-value=1.5e-05 Score=77.85 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (394)
Q Consensus 177 G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~ 256 (394)
|+.||++| ..-|.+|++||+++....+...+ .+...|. ....++.+++++||+|++|+|..+.+..++ .
T Consensus 32 GspMArnL-lkAGheV~V~Drnrsa~e~e~~e----~LaeaGA-----~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~ 100 (341)
T TIGR01724 32 GSRMAIEF-AMAGHDVVLAEPNREFMSDDLWK----KVEDAGV-----KVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R 100 (341)
T ss_pred HHHHHHHH-HHCCCEEEEEeCChhhhhhhhhH----HHHHCCC-----eecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence 89999998 57799999999886532111111 1222232 234688999999999999999888888887 5
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CcceEEeeccCCCCC
Q 016162 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVFEDEPY 304 (394)
Q Consensus 257 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~l~gaalDV~~~EP~ 304 (394)
..++.+++|+++||+++ ++.+.++..|+.. ++..--+-|.+.+|-
T Consensus 101 GLaa~L~~GaIVID~ST---IsP~t~~~~~e~~l~~~r~d~~v~s~HP~ 146 (341)
T TIGR01724 101 TIIEHVPENAVICNTCT---VSPVVLYYSLEKILRLKRTDVGISSMHPA 146 (341)
T ss_pred HHHhcCCCCCEEEECCC---CCHHHHHHHHHHHhhcCccccCeeccCCC
Confidence 68899999999999976 6678888888761 112345566777775
No 115
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.27 E-value=3.1e-05 Score=74.93 Aligned_cols=170 Identities=18% Similarity=0.269 Sum_probs=108.9
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~---~--~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+++....++ ..+++|+.+.+. . +.|+|++..+ ..+++ .++++.+-. |=|- |+....+
T Consensus 53 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 125 (282)
T PRK14169 53 RRAEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KDVD----GFSPVSV 125 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhhh
Confidence 33455688887766654 357777776663 1 4689999865 34443 344444332 3111 1111111
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
|-...+.++ ....++.-++.++= +.+.+++||++.|||-+. +|+.+|
T Consensus 126 ------g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla 173 (282)
T PRK14169 126 ------GRLWANEPT-VVASTPYGIMALLD-------------------------AYDIDVAGKRVVIVGRSNIVGRPLA 173 (282)
T ss_pred ------HHHhcCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence 111122232 45566666664441 123579999999999876 699999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.+... ..++.+..++||+|+++++. .+++..+.+
T Consensus 174 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----p~~i~~~~v-- 218 (282)
T PRK14169 174 GLM-VNHDATVTIAHSK----------------------------TRNLKQLTKEADILVVAVGV----PHFIGADAV-- 218 (282)
T ss_pred HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence 998 6779999877431 14788999999999999972 456887765
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
|+|+++||++--.
T Consensus 219 -k~GavVIDvGin~ 231 (282)
T PRK14169 219 -KPGAVVIDVGISR 231 (282)
T ss_pred -CCCcEEEEeeccc
Confidence 7999999998644
No 116
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.26 E-value=3.3e-05 Score=74.89 Aligned_cols=171 Identities=20% Similarity=0.225 Sum_probs=108.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+++....++. .+++|+.+.+. ++.|+|++..+ ..+++. +++..+-. |= +|.+.-
T Consensus 52 k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~ 121 (287)
T PRK14173 52 RQAKALGLRSQVEVLPES-TSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL--KD-------VDGFHP 121 (287)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence 334557888877666543 46777776663 24789999865 344443 33443322 31 222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
. ..|-.+.+.+ .....++.-++.++- +.+.++.||++.|||-+. +|+.+|
T Consensus 122 ~---N~g~l~~~~~-~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla 172 (287)
T PRK14173 122 L---NVGRLWMGGE-ALEPCTPAGVVRLLK-------------------------HYGIPLAGKEVVVVGRSNIVGKPLA 172 (287)
T ss_pred h---hhHHHhcCCC-CCCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence 0 0111111122 244556665554431 124589999999999875 699999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.+... ..++++..++||+|+.++.. .+++..+.+
T Consensus 173 ~lL-~~~~aTVtichs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~v-- 217 (287)
T PRK14173 173 ALL-LREDATVTLAHSK----------------------------TQDLPAVTRRADVLVVAVGR----PHLITPEMV-- 217 (287)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence 998 6779999876532 13788999999999999962 467877776
Q ss_pred CCCCcEEEEcCCCcc
Q 016162 262 MKKEAILVNCSRGPV 276 (394)
Q Consensus 262 mk~gailIN~aRG~~ 276 (394)
|+|+++||++.-.+
T Consensus 218 -k~GavVIDVGin~~ 231 (287)
T PRK14173 218 -RPGAVVVDVGINRV 231 (287)
T ss_pred -CCCCEEEEccCccc
Confidence 89999999987553
No 117
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.25 E-value=3.8e-05 Score=74.83 Aligned_cols=171 Identities=20% Similarity=0.210 Sum_probs=108.4
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~---~--~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++. .+++|+.+.+. . +.++|++..+ ..+++ .++++.+-. | -+|.+.-
T Consensus 55 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 124 (297)
T PRK14186 55 KACARVGIASFGKHLPAD-TSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--K-------DADGLHP 124 (297)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence 344557888877666543 57777776663 1 4689999865 34443 344444332 3 1222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
.. .|-...+.++ ....+|.-++.++- +.+.+++||++.|||-+. +|+.+|
T Consensus 125 ~n---~g~l~~~~~~-~~PcTp~aii~lL~-------------------------~~~i~l~Gk~vvVIGrS~iVGkPla 175 (297)
T PRK14186 125 LN---LGRLVKGEPG-LRSCTPAGVMRLLR-------------------------SQQIDIAGKKAVVVGRSILVGKPLA 175 (297)
T ss_pred hh---HHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence 10 1111122222 34455555554331 124589999999999876 699999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.+... ..++++..++||+|+.+++. .+++..+.+
T Consensus 176 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~i-- 220 (297)
T PRK14186 176 LML-LAANATVTIAHSR----------------------------TQDLASITREADILVAAAGR----PNLIGAEMV-- 220 (297)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence 998 6789999877432 14788999999999999972 357777666
Q ss_pred CCCCcEEEEcCCCcc
Q 016162 262 MKKEAILVNCSRGPV 276 (394)
Q Consensus 262 mk~gailIN~aRG~~ 276 (394)
|+|+++||++--.+
T Consensus 221 -k~gavVIDvGin~~ 234 (297)
T PRK14186 221 -KPGAVVVDVGIHRL 234 (297)
T ss_pred -CCCCEEEEeccccc
Confidence 79999999986553
No 118
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.25 E-value=5.6e-05 Score=73.32 Aligned_cols=170 Identities=14% Similarity=0.178 Sum_probs=107.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|++++....++ ..+++|+.+.+. ++.|+|++..+ ..+++. ++++.+-. |= +|.+.-
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KD-------VDGl~~ 124 (288)
T PRK14171 55 KNAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KD-------IDGFHP 124 (288)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------cccCCc
Confidence 34455788887766554 357788777663 24789999865 344443 44443322 31 222210
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
. ..|-............++.-++.++ + +.+.++.||++.|||-+. +|+.+|
T Consensus 125 ~---N~g~l~~g~~~~~~PcTp~av~~lL----~---------------------~y~i~l~GK~vvViGrS~iVGkPla 176 (288)
T PRK14171 125 L---NVGYLHSGISQGFIPCTALGCLAVI----K---------------------KYEPNLTGKNVVIIGRSNIVGKPLS 176 (288)
T ss_pred c---chhhhhcCCCCCCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 0 1111112221224455555544333 2 123579999999999886 599999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.+... ..++.+..++||+|+.++.. .++|..+.+
T Consensus 177 ~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~v-- 221 (288)
T PRK14171 177 ALL-LKENCSVTICHSK----------------------------THNLSSITSKADIVVAAIGS----PLKLTAEYF-- 221 (288)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----CCccCHHHc--
Confidence 998 6779999876531 14788999999999999972 467887766
Q ss_pred CCCCcEEEEcCCC
Q 016162 262 MKKEAILVNCSRG 274 (394)
Q Consensus 262 mk~gailIN~aRG 274 (394)
|+|+++||++--
T Consensus 222 -k~GavVIDvGin 233 (288)
T PRK14171 222 -NPESIVIDVGIN 233 (288)
T ss_pred -CCCCEEEEeecc
Confidence 799999999843
No 119
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.24 E-value=0.00011 Score=76.96 Aligned_cols=253 Identities=18% Similarity=0.140 Sum_probs=129.9
Q ss_pred eeEEEeCCCCc--eEEEEeCCCCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHH---hc-----CCCcEEEecCCc
Q 016162 5 VSIEVWNPNGK--YRVVSTKPMPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIAL---IG-----DKCDGVIGQLTE 72 (394)
Q Consensus 5 ~~~~~~~~~~~--~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~el~~~---~~-----~~~d~ii~~~~~ 72 (394)
|+|-++++... .||- +.| +..+.|.+.|+++.+..... ...+.+|..+. +. +++|.|+.- ..
T Consensus 1 m~IGipkE~~~~E~RVa----ltP-~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV-~~ 74 (509)
T PRK09424 1 MRIGIPRERLPGETRVA----ATP-KTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKV-NA 74 (509)
T ss_pred CeEEEecCCCCCCeEec----cCH-HHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEe-CC
Confidence 45666665543 2342 223 24667778888887655422 22344444421 10 136766632 22
Q ss_pred cccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCC--chhhHHHHHHHHHHH--HhchHHHHHHHHcC
Q 016162 73 DWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVL--TETTAELAASLSLAA--ARRIVEADEFMRAG 148 (394)
Q Consensus 73 ~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~--~~~vAE~~l~~~L~~--~R~~~~~~~~~~~g 148 (394)
.+++-++.++. |-.+++...-..|.=-++.+.++||.+...--.- +++-.=.+++-|-.+ .|-+..+.+.+ +
T Consensus 75 -P~~~e~~~l~~-g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av~~aa~~~--~ 150 (509)
T PRK09424 75 -PSDDEIALLRE-GATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAVIEAAHEF--G 150 (509)
T ss_pred -CCHHHHHhcCC-CCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHHHHHHHHh--c
Confidence 23444666765 3345565555445445677788999887722211 111111111111111 11111111111 1
Q ss_pred ccCCCCCCcc-cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhh---hhhcCC--CCc
Q 016162 149 LYDGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGE--QPV 222 (394)
Q Consensus 149 ~~~~w~~~~~-~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~--~~~ 222 (394)
++ .+... ......|.+|.|+|.|.+|...++.+ +.+|++|+++|+++.... ..+.++.. .+.... ...
T Consensus 151 ~~---~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rle--~aeslGA~~v~i~~~e~~~~~~ 224 (509)
T PRK09424 151 RF---FTGQITAAGKVPPAKVLVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVAE--QVESMGAEFLELDFEEEGGSGD 224 (509)
T ss_pred cc---CCCceeccCCcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHHHcCCeEEEecccccccccc
Confidence 11 00000 00135699999999999999999985 899999999999886532 22223221 000000 000
Q ss_pred ccc-cc-CC--------HHHHhcccCEEEEcCCCChh-hhhcccHHHHhcCCCCcEEEEcCC
Q 016162 223 TWK-RA-SS--------MDEVLREADVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 223 ~~~-~~-~~--------l~ell~~aDiV~l~lPlt~~-t~~li~~~~l~~mk~gailIN~aR 273 (394)
++. .. .+ +.+.+..+|+|+.|...... ...++.++.++.||+|+++++++-
T Consensus 225 gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 225 GYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 000 00 01 12223579999988753111 234557899999999999999974
No 120
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.23 E-value=1e-06 Score=82.09 Aligned_cols=133 Identities=14% Similarity=0.193 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHH-hcCCcEEEE-EcCch
Q 016162 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLYQ 199 (394)
Q Consensus 122 ~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la-~~~G~~V~~-~d~~~ 199 (394)
..++|.+..++...|++. | |. ..++++|+|+|.+|+.+++.+. ...|+++.+ +|+++
T Consensus 62 ~~~gy~v~~l~~~~~~~l--------~----~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~ 120 (213)
T PRK05472 62 RGVGYNVEELLEFIEKIL--------G----LD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDP 120 (213)
T ss_pred CCCCeeHHHHHHHHHHHh--------C----CC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECCh
Confidence 334588888888888764 1 21 2458999999999999998531 357888775 67654
Q ss_pred hhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEEEcCCCChh---hhhcccHHHHhcCCCCcEEEEcCCC
Q 016162 200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNCSRG 274 (394)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~lPlt~~---t~~li~~~~l~~mk~gailIN~aRG 274 (394)
..... .. .+..+....++++++++ .|.|++|+|.+.. ...+.......-+...++.+|+.+|
T Consensus 121 ~~~~~-----------~i--~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~ 187 (213)
T PRK05472 121 EKIGT-----------KI--GGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPED 187 (213)
T ss_pred hhcCC-----------Ee--CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCC
Confidence 32100 00 01112223567888765 9999999997665 2233333444556778889999999
Q ss_pred cccCHHHHHHHHHc
Q 016162 275 PVIDEVALVEHLKQ 288 (394)
Q Consensus 275 ~~vde~aL~~aL~~ 288 (394)
.+|+.++|..+|..
T Consensus 188 ~~v~~~~l~~~l~~ 201 (213)
T PRK05472 188 VIVRNVDLTVELQT 201 (213)
T ss_pred CEEEEechHHHHHH
Confidence 99999999999874
No 121
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=9.4e-05 Score=71.70 Aligned_cols=171 Identities=16% Similarity=0.226 Sum_probs=109.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+++....++. .+++|+.+.+. ++.|+|++..+ ..+++. ++++.+-. | -+|.+.-
T Consensus 55 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--K-------DVDGl~~ 124 (284)
T PRK14190 55 KAAEKVGIYSELYEFPAD-ITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--K-------DVDGFHP 124 (284)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCH
Confidence 334556888877666543 56777776653 14688998865 344443 34443322 3 1222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
.. .|-...+.++ ....++.-++.++= +.+.+++||++.|||-+. +|+.+|
T Consensus 125 ~n---~g~l~~~~~~-~~PcTp~av~~lL~-------------------------~~~i~l~Gk~vvViGrS~iVG~Pla 175 (284)
T PRK14190 125 IN---VGRMMLGQDT-FLPCTPHGILELLK-------------------------EYNIDISGKHVVVVGRSNIVGKPVG 175 (284)
T ss_pred hh---HHHHhcCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence 00 1111222232 44556665554431 134589999999999875 699999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.++.. ..++.+.+++||+|+.++. ..++|..+.+
T Consensus 176 ~lL-~~~~atVt~chs~----------------------------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~i-- 220 (284)
T PRK14190 176 QLL-LNENATVTYCHSK----------------------------TKNLAELTKQADILIVAVG----KPKLITADMV-- 220 (284)
T ss_pred HHH-HHCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEecC----CCCcCCHHHc--
Confidence 998 6789999887532 1368889999999999986 2457888887
Q ss_pred CCCCcEEEEcCCCcc
Q 016162 262 MKKEAILVNCSRGPV 276 (394)
Q Consensus 262 mk~gailIN~aRG~~ 276 (394)
|+|+++||++.-.+
T Consensus 221 -k~gavVIDvGi~~~ 234 (284)
T PRK14190 221 -KEGAVVIDVGVNRL 234 (284)
T ss_pred -CCCCEEEEeecccc
Confidence 89999999987553
No 122
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.21 E-value=4.5e-05 Score=73.81 Aligned_cols=170 Identities=17% Similarity=0.220 Sum_probs=107.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+. ++.|+|++..+ ..+++ +++++.+-. |=|- |+..+.+
T Consensus 53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 125 (282)
T PRK14166 53 KACEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDVD----GFHPINV 125 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence 33455688877766654 357788777663 25789999865 34444 334443322 3111 1111111
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
... ..+........++.-++.++= +.+.++.||++.|||-+. +|+.+|
T Consensus 126 g~l------~~g~~~~~~PcTp~avi~lL~-------------------------~y~i~l~Gk~vvVvGrS~iVGkPla 174 (282)
T PRK14166 126 GYL------NLGLESGFLPCTPLGVMKLLK-------------------------AYEIDLEGKDAVIIGASNIVGRPMA 174 (282)
T ss_pred HHH------hcCCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 111 111011234556665554431 123579999999999886 699999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.+..+ ..++.+..++||+|+.++.. .+++..+.+
T Consensus 175 ~lL-~~~~atVt~chs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~v-- 219 (282)
T PRK14166 175 TML-LNAGATVSVCHIK----------------------------TKDLSLYTRQADLIIVAAGC----VNLLRSDMV-- 219 (282)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHHc--
Confidence 998 6779999876542 14788999999999999872 566877765
Q ss_pred CCCCcEEEEcCCC
Q 016162 262 MKKEAILVNCSRG 274 (394)
Q Consensus 262 mk~gailIN~aRG 274 (394)
|+|+++||++--
T Consensus 220 -k~GavVIDvGin 231 (282)
T PRK14166 220 -KEGVIVVDVGIN 231 (282)
T ss_pred -CCCCEEEEeccc
Confidence 799999999853
No 123
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.21 E-value=3.3e-05 Score=76.34 Aligned_cols=172 Identities=15% Similarity=0.262 Sum_probs=108.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+. ++.|+|++..+ ..+++. ++++.+-. |=|- |+..+.+
T Consensus 109 K~a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDVD----Gl~p~N~ 181 (345)
T PLN02897 109 KACEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--KDVD----GFHPLNV 181 (345)
T ss_pred HHHHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----CCCHHHH
Confidence 33455788887766654 347788777663 24789999865 445554 34443322 3111 1111111
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
-..... .........++.-++.++- +.+.+++||++.|||-+. +|+.+|
T Consensus 182 G~L~~~-----~~~~~~~PCTp~avi~LL~-------------------------~~~i~l~GK~vvVIGRS~iVGkPla 231 (345)
T PLN02897 182 GNLAMR-----GREPLFVSCTPKGCVELLI-------------------------RSGVEIAGKNAVVIGRSNIVGLPMS 231 (345)
T ss_pred HHHhcC-----CCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccccHHHH
Confidence 111110 1001245566666665541 123579999999999886 599999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|..+... ..++++..++||+|+.++.. .+++..+.+
T Consensus 232 ~LL-~~~~ATVTicHs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~v~~d~v-- 276 (345)
T PLN02897 232 LLL-QRHDATVSTVHAF----------------------------TKDPEQITRKADIVIAAAGI----PNLVRGSWL-- 276 (345)
T ss_pred HHH-HHCCCEEEEEcCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence 987 6779999876432 13688999999999999872 456877766
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
|+|+++||++--.
T Consensus 277 -k~GavVIDVGin~ 289 (345)
T PLN02897 277 -KPGAVVIDVGTTP 289 (345)
T ss_pred -CCCCEEEEccccc
Confidence 7999999998643
No 124
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=98.19 E-value=5.8e-05 Score=73.59 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=107.0
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccchh
Q 016162 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (394)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~~ 103 (394)
..++.|.+.+....++ ..+++|+.+.+. ++.++|++..+ ..+++. ++++.+-. | -+|.+.-.
T Consensus 63 ~a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~--K-------DVDGl~~~ 132 (299)
T PLN02516 63 ACAEVGIKSFDVDLPE-NISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE--K-------DVDGFHPL 132 (299)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc--c-------ccCccCHh
Confidence 3455688877666644 347788776663 24689998865 344443 33433322 2 12222110
Q ss_pred HHhhCCceEecC-CCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 104 AANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 104 ~a~~~gI~v~n~-p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
. .|-..... .......++.-++.++ + +.+.++.||++.|||-+. +|+.+|
T Consensus 133 n---~g~l~~~~~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvVIGRS~iVGkPla 184 (299)
T PLN02516 133 N---IGKLAMKGREPLFLPCTPKGCLELL----S---------------------RSGIPIKGKKAVVVGRSNIVGLPVS 184 (299)
T ss_pred h---HhhHhcCCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence 0 11111110 1123455555554333 1 123589999999999986 599999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.+... ..++++.+++||+|+.++.. .+++..+.+
T Consensus 185 ~lL-~~~~ATVtvchs~----------------------------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~v-- 229 (299)
T PLN02516 185 LLL-LKADATVTVVHSR----------------------------TPDPESIVREADIVIAAAGQ----AMMIKGDWI-- 229 (299)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHHc--
Confidence 998 6779999887532 14688999999999999863 367887766
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
|+|+++||++--.
T Consensus 230 -k~gavVIDvGin~ 242 (299)
T PLN02516 230 -KPGAAVIDVGTNA 242 (299)
T ss_pred -CCCCEEEEeeccc
Confidence 7999999998544
No 125
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.19 E-value=5.8e-05 Score=73.03 Aligned_cols=169 Identities=12% Similarity=0.181 Sum_probs=105.9
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+. ++.|+|++..+ ..+++ +++++.+-. |= +|.+.-
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~ 123 (282)
T PRK14180 54 KACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KD-------VDGFHP 123 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc--cc-------ccccCh
Confidence 33455788887766554 346777776653 24689999865 34444 344444332 31 222210
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
. ..|-...+........++.-++.++= +.+.+++||++.|||-+. +|+.+|
T Consensus 124 ~---n~g~l~~g~~~~~~PcTp~aii~lL~-------------------------~y~i~l~Gk~vvViGrS~~VGkPla 175 (282)
T PRK14180 124 T---NVGRLQLRDKKCLESCTPKGIMTMLR-------------------------EYGIKTEGAYAVVVGASNVVGKPVS 175 (282)
T ss_pred h---hHHHHhcCCCCCcCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 0 01111111111234455655554331 124579999999999876 699999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.+... ..++.+..++||+|+.+++. .++|..+.+
T Consensus 176 ~lL-~~~~ATVt~chs~----------------------------T~dl~~~~k~ADIvIsAvGk----p~~i~~~~v-- 220 (282)
T PRK14180 176 QLL-LNAKATVTTCHRF----------------------------TTDLKSHTTKADILIVAVGK----PNFITADMV-- 220 (282)
T ss_pred HHH-HHCCCEEEEEcCC----------------------------CCCHHHHhhhcCEEEEccCC----cCcCCHHHc--
Confidence 998 6779999877542 13788889999999999972 456777665
Q ss_pred CCCCcEEEEcCC
Q 016162 262 MKKEAILVNCSR 273 (394)
Q Consensus 262 mk~gailIN~aR 273 (394)
|+|+++||++-
T Consensus 221 -k~gavVIDvGi 231 (282)
T PRK14180 221 -KEGAVVIDVGI 231 (282)
T ss_pred -CCCcEEEEecc
Confidence 79999999985
No 126
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.18 E-value=8.6e-06 Score=72.20 Aligned_cols=104 Identities=21% Similarity=0.318 Sum_probs=64.6
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC--CCCccccccCCHHHHhcccCEEEEcC
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG--EQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
+|+|||.|+.|..+|..+ ...|.+|..|.|..... +...+. ........ ..+.......++++.++.+|+|++++
T Consensus 1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~~-~~i~~~-~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQI-EEINET-RQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHHH-HHHHHH-TSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHHH-HHHHHh-CCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence 689999999999999997 57789999999987432 111110 00000000 00111223468999999999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
|. ...+.++ ++....++++..+|++..|-
T Consensus 78 Ps-~~~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PS-QAHREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -G-GGHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred cH-HHHHHHH-HHHhhccCCCCEEEEecCCc
Confidence 93 3334333 55566678999999998664
No 127
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.18 E-value=3.2e-06 Score=81.65 Aligned_cols=102 Identities=21% Similarity=0.370 Sum_probs=75.7
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
.+...+|.|||.|-+|.+-||. |.++|.+|...|.+..+ +....+.|+ +......+....+++.+.++|+|+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAki-A~glgA~Vtild~n~~r-l~~ldd~f~------~rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKI-AIGLGADVTILDLNIDR-LRQLDDLFG------GRVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCCCccEEEECCccccchHHHH-HhccCCeeEEEecCHHH-HhhhhHhhC------ceeEEEEcCHHHHHHHhhhccEEE
Confidence 4667789999999999999998 48999999999998754 332222222 111122233446889999999997
Q ss_pred --EcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 242 --LHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 242 --l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
+.+|. ...-.++.++.+++||||+++||++
T Consensus 237 gaVLIpg-akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 237 GAVLIPG-AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEEecC-CCCceehhHHHHHhcCCCcEEEEEE
Confidence 44563 4556788899999999999999985
No 128
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.17 E-value=7.5e-05 Score=74.22 Aligned_cols=170 Identities=16% Similarity=0.182 Sum_probs=106.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHh---c--CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALI---G--DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~---~--~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+ + ++.|+|++..+ ..+++ .++++.+-. |= +|.+--
T Consensus 126 K~~e~~GI~~~~~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~--KD-------VDGl~p 195 (364)
T PLN02616 126 KACDSVGINSFEVRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE--KD-------VDGFHP 195 (364)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence 34455788776665544 34777877766 2 24789999865 34554 344444332 31 222211
Q ss_pred hHHhhCCceEec--CCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHH
Q 016162 103 NAANKYGIAVGN--TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSA 179 (394)
Q Consensus 103 ~~a~~~gI~v~n--~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~ 179 (394)
.. .|-.... -++ ....++.-++-++ + +.+.+++||++.|||-+. +|+.
T Consensus 196 ~N---~G~L~~g~~~~~-f~PCTp~avielL----~---------------------~y~i~l~GK~vvVIGRS~iVGkP 246 (364)
T PLN02616 196 LN---IGRLAMRGREPL-FVPCTPKGCIELL----H---------------------RYNVEIKGKRAVVIGRSNIVGMP 246 (364)
T ss_pred hh---hHHHhcCCCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccccHH
Confidence 00 0111111 122 3445555544322 1 123579999999999876 5999
Q ss_pred HHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHH
Q 016162 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (394)
Q Consensus 180 vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l 259 (394)
+|..| ..-|++|+.+... ..++++..++||+|+.++. ..+++..+.+
T Consensus 247 La~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~ADIVIsAvG----kp~~i~~d~v 293 (364)
T PLN02616 247 AALLL-QREDATVSIVHSR----------------------------TKNPEEITREADIIISAVG----QPNMVRGSWI 293 (364)
T ss_pred HHHHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCC----CcCcCCHHHc
Confidence 99998 6789999877432 2478899999999999987 2556877766
Q ss_pred hcCCCCcEEEEcCCCc
Q 016162 260 ATMKKEAILVNCSRGP 275 (394)
Q Consensus 260 ~~mk~gailIN~aRG~ 275 (394)
|+|+++||++--.
T Consensus 294 ---K~GAvVIDVGIn~ 306 (364)
T PLN02616 294 ---KPGAVVIDVGINP 306 (364)
T ss_pred ---CCCCEEEeccccc
Confidence 7999999998543
No 129
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.16 E-value=6.1e-05 Score=73.23 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=107.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~---~--~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++. .+++|+.+.+. . ..|+|++..+ ..+++. ++++.+-. |= +|.+--
T Consensus 55 k~a~~~Gi~~~~~~l~~~-~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~ 124 (294)
T PRK14187 55 RKAEMLGLRSETILLPST-ISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPE--KD-------VDGFHN 124 (294)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence 344557888877666543 46777766553 2 4689998865 345543 44444332 31 222211
Q ss_pred hHHhhCCceEecCC-CCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHH
Q 016162 103 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY 180 (394)
Q Consensus 103 ~~a~~~gI~v~n~p-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~v 180 (394)
.. .|-...+.. ......++.-++.++ + +.+.++.||++.|||-+. +|+.+
T Consensus 125 ~n---~g~l~~g~~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPl 176 (294)
T PRK14187 125 EN---VGRLFTGQKKNCLIPCTPKGCLYLI----K---------------------TITRNLSGSDAVVIGRSNIVGKPM 176 (294)
T ss_pred hh---HHHHhCCCCCCCccCcCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHH
Confidence 00 111111111 123455565555333 1 123579999999999886 59999
Q ss_pred HHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (394)
Q Consensus 181 A~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~ 260 (394)
|..| ..-|++|+.+... ..++.+.+++||+|+.++.. .+++..+.+
T Consensus 177 a~lL-~~~~aTVt~chs~----------------------------T~~l~~~~~~ADIvVsAvGk----p~~i~~~~i- 222 (294)
T PRK14187 177 ACLL-LGENCTVTTVHSA----------------------------TRDLADYCSKADILVAAVGI----PNFVKYSWI- 222 (294)
T ss_pred HHHH-hhCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc-
Confidence 9997 6889999877542 14788999999999999872 456777776
Q ss_pred cCCCCcEEEEcCCCc
Q 016162 261 TMKKEAILVNCSRGP 275 (394)
Q Consensus 261 ~mk~gailIN~aRG~ 275 (394)
|+|+++||++-..
T Consensus 223 --k~gaiVIDVGin~ 235 (294)
T PRK14187 223 --KKGAIVIDVGINS 235 (294)
T ss_pred --CCCCEEEEecccc
Confidence 7999999998544
No 130
>PRK07680 late competence protein ComER; Validated
Probab=98.16 E-value=1.3e-05 Score=77.41 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=71.4
Q ss_pred eEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
+|||||+|+||+.+++.| ...| .+|.+|||+.... +...+.| .+ .....+..+++..+|+|++
T Consensus 2 ~I~iIG~G~mG~ala~~L-~~~g~~~~~~v~v~~r~~~~~-~~~~~~~------~g-----~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAF-LESGAVKPSQLTITNRTPAKA-YHIKERY------PG-----IHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred EEEEECccHHHHHHHHHH-HHCCCCCcceEEEECCCHHHH-HHHHHHc------CC-----eEEECCHHHHHHhCCEEEE
Confidence 699999999999999987 4555 3799999987542 2211111 01 1223578888999999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (394)
|+| ......++ ++....++++.++|+++-| +..+.|.+.+.
T Consensus 69 av~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 69 CVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred ecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 998 33345544 3444567888999999854 36666665554
No 131
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=6.9e-05 Score=73.06 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=105.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+++....++ ..+++|+.+.+. ++.|+|++..+ ..+++. ++++.+-. |= +|.+.-
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~--KD-------VDGl~~ 123 (295)
T PRK14174 54 KSCKEIGMNSTVIELPA-DTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA--KD-------VDGFHP 123 (295)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cc-------ccccCh
Confidence 34455788887776654 347777776663 24689998865 455554 33443322 31 222211
Q ss_pred hHHhhCCceEecC-CCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHH
Q 016162 103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY 180 (394)
Q Consensus 103 ~~a~~~gI~v~n~-p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~v 180 (394)
. ..|-...+. .......+|.-++-++ + +.+.++.||++.|||-+. +|+.+
T Consensus 124 ~---n~g~l~~~~~~~~~~PcTp~ail~ll----~---------------------~y~i~l~Gk~vvViGrS~iVG~Pl 175 (295)
T PRK14174 124 E---NLGRLVMGHLDKCFVSCTPYGILELL----G---------------------RYNIETKGKHCVVVGRSNIVGKPM 175 (295)
T ss_pred h---hHHHHhcCCCCCCcCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHH
Confidence 0 001011111 0123445555443222 1 123579999999999876 69999
Q ss_pred HHHHHhc---CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHH
Q 016162 181 ARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (394)
Q Consensus 181 A~~la~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~ 257 (394)
|..|.+. .|++|...... ..++++.+++||+|+.+++. .++|..+
T Consensus 176 a~lL~~~~~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIvI~Avg~----~~li~~~ 223 (295)
T PRK14174 176 ANLMLQKLKESNCTVTICHSA----------------------------TKDIPSYTRQADILIAAIGK----ARFITAD 223 (295)
T ss_pred HHHHHhccccCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEecCc----cCccCHH
Confidence 9987432 47888765432 13688999999999999962 2778888
Q ss_pred HHhcCCCCcEEEEcCCCc
Q 016162 258 RLATMKKEAILVNCSRGP 275 (394)
Q Consensus 258 ~l~~mk~gailIN~aRG~ 275 (394)
.+ |+|+++||++-..
T Consensus 224 ~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 224 MV---KPGAVVIDVGINR 238 (295)
T ss_pred Hc---CCCCEEEEeeccc
Confidence 88 9999999998543
No 132
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.15 E-value=1.2e-05 Score=83.12 Aligned_cols=117 Identities=16% Similarity=0.224 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEEEcCCCChhhhh
Q 016162 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH 252 (394)
Q Consensus 176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~lPlt~~t~~ 252 (394)
||+.+|++| ..-|.+|.+|||++.+..+ +.+. .+. ..+...+.+++++++. +|+|++|+|..+.+..
T Consensus 1 MG~~mA~nL-~~~G~~V~v~nrt~~~~~~-l~~~-------~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNI-ASHGYTVAVYNRTPEKTDE-FLAE-------EGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHH-HhCCCeEEEECCCHHHHHH-HHHh-------hCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 799999998 5789999999999876422 2111 010 0112345789998875 8999999999988888
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (394)
Q Consensus 253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP 303 (394)
++ .+.+..+.+|.++||+++...-|+..+.+.+++..+.....=|.-.++
T Consensus 71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 88 568899999999999999999999999999988777666655666554
No 133
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.14 E-value=0.00014 Score=70.48 Aligned_cols=168 Identities=16% Similarity=0.220 Sum_probs=106.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+++....++ ..+++|+.+.+. ++.|+|++..+ ..+++ .++++.+-. |= +|.+--
T Consensus 56 k~~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KD-------VDGl~~ 125 (284)
T PRK14177 56 KACHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KD-------VDGVTT 125 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------cccCCh
Confidence 34456788887766544 347777776553 25789999865 23443 334443322 31 222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
. ..|-...+.+ .....++.-++.++ + +.+.++.||++.|||-+. +|+.+|
T Consensus 126 ~---n~g~l~~g~~-~~~PcTp~avi~ll----~---------------------~y~i~l~Gk~vvViGrS~iVGkPla 176 (284)
T PRK14177 126 L---SFGKLSMGVE-TYLPCTPYGMVLLL----K---------------------EYGIDVTGKNAVVVGRSPILGKPMA 176 (284)
T ss_pred h---hHHHHHcCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 0 0111112222 23445565555433 1 123579999999999876 699999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-|++|+.++.. ..++.+..++||+|+.++.. .+++..+.+
T Consensus 177 ~lL-~~~~atVt~chs~----------------------------T~~l~~~~~~ADIvIsAvGk----~~~i~~~~i-- 221 (284)
T PRK14177 177 MLL-TEMNATVTLCHSK----------------------------TQNLPSIVRQADIIVGAVGK----PEFIKADWI-- 221 (284)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEeCCC----cCccCHHHc--
Confidence 998 6789999987542 14788999999999999872 556777666
Q ss_pred CCCCcEEEEcCC
Q 016162 262 MKKEAILVNCSR 273 (394)
Q Consensus 262 mk~gailIN~aR 273 (394)
|+|+++||++-
T Consensus 222 -k~gavVIDvGi 232 (284)
T PRK14177 222 -SEGAVLLDAGY 232 (284)
T ss_pred -CCCCEEEEecC
Confidence 79999999985
No 134
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.13 E-value=0.00017 Score=69.94 Aligned_cols=171 Identities=16% Similarity=0.240 Sum_probs=107.7
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+. ++.|+|++..+ ..+++. ++++.+-. |= +|.+--
T Consensus 49 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~p 118 (287)
T PRK14181 49 KKATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD--KD-------VDGLHP 118 (287)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc--cC-------cccCCh
Confidence 33455688887766654 357777776662 25789999865 345543 44444332 31 222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
. ..|-.+.+........++.-++.++ + +.+.++.||++.|||-+. +|+.+|
T Consensus 119 ~---n~g~l~~g~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla 170 (287)
T PRK14181 119 V---NMGKLLLGETDGFIPCTPAGIIELL----K---------------------YYEIPLHGRHVAIVGRSNIVGKPLA 170 (287)
T ss_pred h---hHHHHhcCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence 0 0111111221224455565555443 1 123579999999999886 699999
Q ss_pred HHHHhcC----CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHH
Q 016162 182 RMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (394)
Q Consensus 182 ~~la~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~ 257 (394)
..| ..- ++.|+..... ..++++.+++||+|+.+++. .+++..+
T Consensus 171 ~lL-~~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~ADIvV~AvG~----p~~i~~~ 217 (287)
T PRK14181 171 ALL-MQKHPDTNATVTLLHSQ----------------------------SENLTEILKTADIIIAAIGV----PLFIKEE 217 (287)
T ss_pred HHH-HhCcCCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHH
Confidence 988 455 7888876431 14788999999999999972 3678877
Q ss_pred HHhcCCCCcEEEEcCCCc
Q 016162 258 RLATMKKEAILVNCSRGP 275 (394)
Q Consensus 258 ~l~~mk~gailIN~aRG~ 275 (394)
.+ |+|+++||++--.
T Consensus 218 ~i---k~GavVIDvGin~ 232 (287)
T PRK14181 218 MI---AEKAVIVDVGTSR 232 (287)
T ss_pred Hc---CCCCEEEEecccc
Confidence 76 7999999998644
No 135
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.12 E-value=8.7e-06 Score=77.84 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=70.4
Q ss_pred eEEEEecChHHHHHHHHHHhcCCc---EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
+|||||+|+||+.+++.+. ..|. .+.+|+|+.+.. +.+.+.+ + +.....+..++++++|+|++|
T Consensus 2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence 7999999999999999874 4443 357899876542 2221111 0 112345788889999999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
+| ......++.. + .++++.++|.++ .-+..+.|.+.+..+
T Consensus 69 v~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 69 VR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred eC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 99 3344554432 3 257889999987 346777777777543
No 136
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=8.3e-05 Score=72.09 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=106.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+. ++.|+|++..+ ..+++. ++++.+-. | -+|.+--
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~ 123 (286)
T PRK14184 54 RACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--K-------DVDGFHP 123 (286)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCH
Confidence 34455788887766554 357787776663 24689999865 345543 33443322 2 1222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
.. .|-...+.++ ....++.-++.++ + +.+.++.||++.|||-+. +|+.+|
T Consensus 124 ~N---~g~l~~~~~~-~~PcTp~av~~lL----~---------------------~~~i~l~Gk~vvViGrS~iVG~Pla 174 (286)
T PRK14184 124 EN---MGRLALGLPG-FRPCTPAGVMTLL----E---------------------RYGLSPAGKKAVVVGRSNIVGKPLA 174 (286)
T ss_pred hh---HHHHhCCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence 10 1111112222 3445555444332 1 123579999999999986 599999
Q ss_pred HHHHhc----CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHH
Q 016162 182 RMMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (394)
Q Consensus 182 ~~la~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~ 257 (394)
..| .. -|++|.....+. .++.+.+++||+|+.+++ ..++|..+
T Consensus 175 ~lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~AvG----~p~li~~~ 221 (286)
T PRK14184 175 LML-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAIG----RPRFVTAD 221 (286)
T ss_pred HHH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecC----CCCcCCHH
Confidence 988 55 689988765321 368899999999999995 35678887
Q ss_pred HHhcCCCCcEEEEcCC
Q 016162 258 RLATMKKEAILVNCSR 273 (394)
Q Consensus 258 ~l~~mk~gailIN~aR 273 (394)
.+ |+|+++||++-
T Consensus 222 ~v---k~GavVIDVGi 234 (286)
T PRK14184 222 MV---KPGAVVVDVGI 234 (286)
T ss_pred Hc---CCCCEEEEeee
Confidence 77 89999999974
No 137
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=0.00011 Score=71.67 Aligned_cols=171 Identities=15% Similarity=0.182 Sum_probs=106.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|++.+....++ ..+++|+.+.+. ++.++|++..+ ..+++ .++++.+-. |= +|.+.-
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KD-------VDGl~~ 123 (297)
T PRK14167 54 RDCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KD-------VDGFHP 123 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence 34455788887766654 356777776663 24689999865 34444 344443322 31 222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
. ..|-...+.+ .+...++.-++.++= +.+.+++||++.|||-+. +|+.+|
T Consensus 124 ~---n~g~l~~g~~-~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla 174 (297)
T PRK14167 124 E---NVGRLVAGDA-RFKPCTPHGIQKLLA-------------------------AAGVDTEGADVVVVGRSDIVGKPMA 174 (297)
T ss_pred h---hhHHHhCCCC-CCCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCcccHHHHH
Confidence 0 0111111222 244556665554431 123579999999999876 699999
Q ss_pred HHHHhcC---CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH
Q 016162 182 RMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (394)
Q Consensus 182 ~~la~~~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~ 258 (394)
..|.+.+ +++|...... ..++.+..++||+|+.++- -.+++..+.
T Consensus 175 ~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~ 222 (297)
T PRK14167 175 NLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAAG----VPELIDGSM 222 (297)
T ss_pred HHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 9884333 8899876431 2478899999999999985 245777766
Q ss_pred HhcCCCCcEEEEcCCCc
Q 016162 259 LATMKKEAILVNCSRGP 275 (394)
Q Consensus 259 l~~mk~gailIN~aRG~ 275 (394)
+ |+|+++||++--.
T Consensus 223 i---k~gaiVIDvGin~ 236 (297)
T PRK14167 223 L---SEGATVIDVGINR 236 (297)
T ss_pred c---CCCCEEEEccccc
Confidence 5 7999999998544
No 138
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.09 E-value=4e-06 Score=71.85 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=53.4
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEE-cCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
-.+|||||.|++|..+++.| ..-|.+|.++ +|+....... .. ..+ .....+++|++.++|+++++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa~~a-~~----------~~~--~~~~~~~~~~~~~aDlv~ia 75 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASAERA-AA----------FIG--AGAILDLEEILRDADLVFIA 75 (127)
T ss_dssp --EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HHHHH-HC------------T--T-----TTGGGCC-SEEEE-
T ss_pred ccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCccccccc-cc----------ccc--cccccccccccccCCEEEEE
Confidence 45899999999999999998 6789988765 5655332111 00 111 11245778899999999999
Q ss_pred CCCChhhhhcccHHHHhc--CCCCcEEEEcC
Q 016162 244 PVLDKTTYHLINKERLAT--MKKEAILVNCS 272 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~--mk~gailIN~a 272 (394)
+|.+ ....+ -++.-.. .++|.+++-+|
T Consensus 76 vpDd-aI~~v-a~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 76 VPDD-AIAEV-AEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp S-CC-HHHHH-HHHHHCC--S-TT-EEEES-
T ss_pred echH-HHHHH-HHHHHHhccCCCCcEEEECC
Confidence 9955 33333 2333333 58999999885
No 139
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.09 E-value=1.4e-05 Score=77.09 Aligned_cols=107 Identities=20% Similarity=0.362 Sum_probs=68.6
Q ss_pred CeEEEEecChHHHHHHHHHHhc-CCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~-~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
.+|||||+|.||+.+++.+.+. .+++ +.++|++.... +.+.+.| + ...+.++++++.++|+|++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~~-------~-----~~~~~~~~ell~~~DvVvi~ 68 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASKT-------G-----AKACLSIDELVEDVDLVVEC 68 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHhc-------C-----CeeECCHHHHhcCCCEEEEc
Confidence 3799999999999999987432 2566 45789887542 2221111 1 12346899999999999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP 290 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde---~aL~~aL~~g~ 290 (394)
.|. +... +-....++.|.-++..+.|.+.|. +.|.++.+++.
T Consensus 69 a~~--~~~~---~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 69 ASV--NAVE---EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred CCh--HHHH---HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 883 2221 112233455666666777777764 46666666654
No 140
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=0.00019 Score=69.44 Aligned_cols=171 Identities=16% Similarity=0.141 Sum_probs=109.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+.+..++ ..+++++.+.+. ++.|+|++..+ ..+++. +++..+-. | -+|.+..
T Consensus 53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~~ 122 (282)
T PRK14182 53 KDCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA--K-------DADGFHP 122 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcCCCCH
Confidence 34455788887766654 347777777663 25689999865 345543 44444332 3 2222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
...|-.+.+.++.....+|.-++-++ + +.+.+++||++.|||-+. +|+.+|
T Consensus 123 ---~n~g~l~~g~~~~~~PcTp~avi~ll----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla 174 (282)
T PRK14182 123 ---FNVGALSIGIAGVPRPCTPAGVMRML----D---------------------EARVDPKGKRALVVGRSNIVGKPMA 174 (282)
T ss_pred ---hHHHHHhCCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 11122223333323455555555433 1 123579999999999886 699999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
.+| ..-|++|+.+... ..++++..++||+|+.+++. .++|..+.+
T Consensus 175 ~lL-~~~~AtVtichs~----------------------------T~nl~~~~~~ADIvI~AvGk----~~~i~~~~i-- 219 (282)
T PRK14182 175 MML-LERHATVTIAHSR----------------------------TADLAGEVGRADILVAAIGK----AELVKGAWV-- 219 (282)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence 998 6778999887542 13788999999999999972 567887776
Q ss_pred CCCCcEEEEcCCCc
Q 016162 262 MKKEAILVNCSRGP 275 (394)
Q Consensus 262 mk~gailIN~aRG~ 275 (394)
|+|+++||++--.
T Consensus 220 -k~gaiVIDvGin~ 232 (282)
T PRK14182 220 -KEGAVVIDVGMNR 232 (282)
T ss_pred -CCCCEEEEeecee
Confidence 7999999998544
No 141
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=0.00023 Score=68.96 Aligned_cols=200 Identities=20% Similarity=0.217 Sum_probs=122.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+. +..|+|++..+ ..+++ +++++.+-. |=|- |+..+.+
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KDVD----Gl~~~n~ 127 (284)
T PRK14193 55 RDCAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KDAD----GLHPTNL 127 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cCcc----CCChhhh
Confidence 33455688877666544 357787776663 14689999865 34454 344444432 3111 1111111
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
|-...+.++ ....++.-++.++= +.+.++.||++.|||-+. +|+.+|
T Consensus 128 ------g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrS~~VGkPla 175 (284)
T PRK14193 128 ------GRLVLNEPA-PLPCTPRGIVHLLR-------------------------RYDVELAGAHVVVIGRGVTVGRPIG 175 (284)
T ss_pred ------hHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 111122222 34555655554431 124589999999999875 699999
Q ss_pred HHHHhc--CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHH
Q 016162 182 RMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (394)
Q Consensus 182 ~~la~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l 259 (394)
..| .. .+++|+.+... ..++.+.+++||+|+.++.. .++|..+.+
T Consensus 176 ~lL-~~~~~~atVtvchs~----------------------------T~~l~~~~k~ADIvV~AvGk----p~~i~~~~i 222 (284)
T PRK14193 176 LLL-TRRSENATVTLCHTG----------------------------TRDLAAHTRRADIIVAAAGV----AHLVTADMV 222 (284)
T ss_pred HHH-hhccCCCEEEEeCCC----------------------------CCCHHHHHHhCCEEEEecCC----cCccCHHHc
Confidence 988 45 68999877532 14788999999999999873 357887766
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcH
Q 016162 260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326 (394)
Q Consensus 260 ~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 326 (394)
|+|+++||++.-.+ .+|++.| ||- .+ . .+. --.+||-=||--.
T Consensus 223 ---k~GavVIDvGin~~----------~~gkl~G---Dvd-~~-v-----~~~-a~~iTPVPGGVGp 265 (284)
T PRK14193 223 ---KPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-V-----WEV-AGAVSPNPGGVGP 265 (284)
T ss_pred ---CCCCEEEEcccccc----------CCCcEEe---ecC-Hh-H-----Hhh-CCEEeCCCCChhH
Confidence 79999999986543 2354433 554 21 1 111 1268998777544
No 142
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.07 E-value=9.6e-06 Score=72.70 Aligned_cols=110 Identities=20% Similarity=0.276 Sum_probs=68.7
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-CCCCc------------ccccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV------------TWKRA 227 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~ 227 (394)
..+...++.|+|.|+.|+..++.+ +++|++|..+|.++... .+....+.....-. +.... .....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERL-RQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHH-HHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHH-HhhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence 356778999999999999999996 89999999999887542 11111110000000 00000 00111
Q ss_pred CCHHHHhcccCEEEEc-CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 228 ~~l~ell~~aDiV~l~-lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
..+.+.++.+|+|+.+ +--....-.++.++.++.|||+++++|+|
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 2477889999999853 33355667899999999999999999986
No 143
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.06 E-value=3.7e-05 Score=72.63 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=66.3
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcC--CcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+.+|+|||.|++|+.+++.+++.. ..+ +++++++.....+...+.| + .....++++++.++|+|
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~DiV 70 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------N-----VSTTTDWKQHVTSVDTI 70 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------C-----cEEeCChHHHHhcCCEE
Confidence 3568999999999999999874331 233 7788875333333322211 1 11235788999999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (394)
++++|. .....++ ++.-..++ +.++|.++=| ++.+.|-+.+..
T Consensus 71 iiavp~-~~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~ 113 (245)
T PRK07634 71 VLAMPP-SAHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPK 113 (245)
T ss_pred EEecCH-HHHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCC
Confidence 999993 2333333 22222233 5688988765 455556665543
No 144
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=0.00013 Score=71.10 Aligned_cols=171 Identities=17% Similarity=0.186 Sum_probs=105.7
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++ ..+++|+.+.+. ++.|+|++..+ ..+++. +++..+-. |= +|.+--
T Consensus 56 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~~ 125 (297)
T PRK14168 56 KTAHRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--KD-------VDGFHP 125 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence 33455688887666544 357888776663 24689999865 344443 33433322 21 222210
Q ss_pred hHHhhCCceEecCC-CCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHH
Q 016162 103 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY 180 (394)
Q Consensus 103 ~~a~~~gI~v~n~p-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~v 180 (394)
. ..|-...+.. ......++.-++.++- +.+.++.||++.|||-+. +|+.+
T Consensus 126 ~---n~g~l~~~~~~~~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPl 177 (297)
T PRK14168 126 V---NVGRLMIGGDEVKFLPCTPAGIQEMLV-------------------------RSGVETSGAEVVVVGRSNIVGKPI 177 (297)
T ss_pred h---hHHHHhcCCCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcccHHH
Confidence 0 0111111111 2344555655554432 124589999999999875 69999
Q ss_pred HHHHHhcC----CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162 181 ARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (394)
Q Consensus 181 A~~la~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~ 256 (394)
|..| ..- +++|+.+... ..++.+.+++||+|+.++. ..+++..
T Consensus 178 a~lL-~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvVsAvG----kp~~i~~ 224 (297)
T PRK14168 178 ANMM-TQKGPGANATVTIVHTR----------------------------SKNLARHCQRADILIVAAG----VPNLVKP 224 (297)
T ss_pred HHHH-HhcccCCCCEEEEecCC----------------------------CcCHHHHHhhCCEEEEecC----CcCccCH
Confidence 9988 444 7889876431 1478889999999999986 2456777
Q ss_pred HHHhcCCCCcEEEEcCCCc
Q 016162 257 ERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 257 ~~l~~mk~gailIN~aRG~ 275 (394)
+.+ |+|+++||++.-.
T Consensus 225 ~~i---k~gavVIDvGin~ 240 (297)
T PRK14168 225 EWI---KPGATVIDVGVNR 240 (297)
T ss_pred HHc---CCCCEEEecCCCc
Confidence 766 7999999998644
No 145
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=0.00015 Score=70.59 Aligned_cols=171 Identities=16% Similarity=0.195 Sum_probs=106.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|.+.+....++. .+++|+.+.+. +..|+|++..+ ..+++ .++++.+-. | -+|.+--
T Consensus 54 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~ 123 (293)
T PRK14185 54 KACEECGFKSSLIRYESD-VTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--K-------DVDGFHP 123 (293)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcCCCCH
Confidence 344557888876665543 46777776553 24689999865 34443 344444332 3 1222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA 181 (394)
. ..|-.....++ ....++.-++.++= +.+.++.||++.|||-+. +|+.+|
T Consensus 124 ~---N~g~l~~~~~~-~~PcTp~av~~lL~-------------------------~~~i~l~GK~vvViGrS~iVGkPla 174 (293)
T PRK14185 124 I---NVGRMSIGLPC-FVSATPNGILELLK-------------------------RYHIETSGKKCVVLGRSNIVGKPMA 174 (293)
T ss_pred h---hHHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence 1 01111112222 45566665554431 123579999999999886 599999
Q ss_pred HHHHhc---CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH
Q 016162 182 RMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (394)
Q Consensus 182 ~~la~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~ 258 (394)
..|... ++++|+.+... ..++.+..++||+|+.+++. .++|..+.
T Consensus 175 ~lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~ 222 (293)
T PRK14185 175 QLMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECLEADIIIAALGQ----PEFVKADM 222 (293)
T ss_pred HHHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 988422 27899876431 24788999999999999872 45677766
Q ss_pred HhcCCCCcEEEEcCCCc
Q 016162 259 LATMKKEAILVNCSRGP 275 (394)
Q Consensus 259 l~~mk~gailIN~aRG~ 275 (394)
+ |+|+++||++--.
T Consensus 223 v---k~gavVIDvGin~ 236 (293)
T PRK14185 223 V---KEGAVVIDVGTTR 236 (293)
T ss_pred c---CCCCEEEEecCcc
Confidence 5 8999999998643
No 146
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.05 E-value=5.1e-05 Score=71.42 Aligned_cols=163 Identities=19% Similarity=0.183 Sum_probs=103.4
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc---EEEEEcCch----hhH--HHHHHHhhhhhhhhcCCCCccccccCCHH
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (394)
..++++++.|+|.|.+|+.+|+.| ...|+ +++.+||+. ... +..+...+. +..+... + . .++.
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~-~-~~l~ 92 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T-G-GTLK 92 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c-c-CCHH
Confidence 468899999999999999999997 57788 499999983 211 111112221 1111111 1 1 3677
Q ss_pred HHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-cceEEeeccCCCCCCCCccc
Q 016162 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLS 310 (394)
Q Consensus 232 ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~-l~gaalDV~~~EP~~~~~L~ 310 (394)
+.+.++|+|+.+.| .++++++.++.|+++.++...++. ..|.-+.+|.+.|. +..-+ . +. -..
T Consensus 93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G---~--~~----~~~ 156 (226)
T cd05311 93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATG---R--SD----FPN 156 (226)
T ss_pred HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeC---C--CC----Ccc
Confidence 88899999999987 577888999999999999998843 34443444444332 22222 1 11 124
Q ss_pred cCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHHcCC
Q 016162 311 EMKNAIVVPHIASASK-----WTREGMATLAALNVLGKIKGY 347 (394)
Q Consensus 311 ~~~nvilTPHia~~t~-----~~~~~~~~~~~~ni~~~l~g~ 347 (394)
+-.|+++-|-++-... .--+.|...+++.+-.+..-+
T Consensus 157 Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~ 198 (226)
T cd05311 157 QVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEE 198 (226)
T ss_pred ccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCcc
Confidence 5689999998864221 122556666666666655433
No 147
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.00 E-value=1.4e-05 Score=81.97 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=72.1
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+.|++++|+|.|.||+.+++.| ...| .+|++++|+.... ..+.+.+ +.. .....++.+.+..+|+|
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~-------g~~---~i~~~~l~~~l~~aDvV 244 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKEL-------GGE---AVKFEDLEEYLAEADIV 244 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EeeHHHHHHHHhhCCEE
Confidence 47899999999999999999997 6788 6899999987542 2221111 111 11224677889999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCC----CCcEEEEcCCCcccC
Q 016162 241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGPVID 278 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk----~gailIN~aRG~~vd 278 (394)
+.|++ .+..+++.+.++.+. ...+++|.+...=+|
T Consensus 245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 99976 445678888876642 245888988644344
No 148
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.00 E-value=3.6e-05 Score=71.03 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=66.2
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
++++|+|.|+||+.+|+++ ...|.+|++-+++.++..+...+.. +.. ....+.++..+.+|+|++.+|
T Consensus 2 ~~~~i~GtGniG~alA~~~-a~ag~eV~igs~r~~~~~~a~a~~l-------~~~----i~~~~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 2 MIIAIIGTGNIGSALALRL-AKAGHEVIIGSSRGPKALAAAAAAL-------GPL----ITGGSNEDAAALADVVVLAVP 69 (211)
T ss_pred cEEEEeccChHHHHHHHHH-HhCCCeEEEecCCChhHHHHHHHhh-------ccc----cccCChHHHHhcCCEEEEecc
Confidence 5899999999999999998 5779999988776665444322211 111 123578899999999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162 246 LDKTTYHLINKERLATMKKEAILVNCSRG 274 (394)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~aRG 274 (394)
.. ..... .++...... |.++|++.-.
T Consensus 70 ~~-a~~~v-~~~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 70 FE-AIPDV-LAELRDALG-GKIVIDATNP 95 (211)
T ss_pred HH-HHHhH-HHHHHHHhC-CeEEEecCCC
Confidence 53 33333 255555555 8999998764
No 149
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=4.5e-05 Score=71.37 Aligned_cols=116 Identities=23% Similarity=0.308 Sum_probs=88.3
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH---hcccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l 242 (394)
+++|.||+|+||..+++++ ..-|.+|++||+++....+. ...+. ....+++++ |..--+|-+
T Consensus 1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~~---------~~~ga-----~~a~sl~el~~~L~~pr~vWl 65 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEEL---------KDEGA-----TGAASLDELVAKLSAPRIVWL 65 (300)
T ss_pred CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHHH---------HhcCC-----ccccCHHHHHHhcCCCcEEEE
Confidence 4789999999999999998 68899999999998764332 12222 224567766 456789999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~ 299 (394)
++|...-|...| ++.-..+.+|-++|+-+...--|....++.|++..+ ..+||=
T Consensus 66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~G 119 (300)
T COG1023 66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVG 119 (300)
T ss_pred EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEecc
Confidence 999876666666 566677899999999998888888888888887765 345654
No 150
>PLN00203 glutamyl-tRNA reductase
Probab=97.99 E-value=2.5e-05 Score=81.94 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=72.3
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
++.+++|+|||.|.||+.+++.| ...|+ +|++++|+.... +.+...| +.....+....++.+.+.++|+|
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~-------~g~~i~~~~~~dl~~al~~aDVV 333 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEF-------PDVEIIYKPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHh-------CCCceEeecHhhHHHHHhcCCEE
Confidence 48899999999999999999997 67887 799999987553 2222222 11111122335677889999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCC-------CcEEEEcCCCc
Q 016162 241 SLHPVLDKTTYHLINKERLATMKK-------EAILVNCSRGP 275 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~-------gailIN~aRG~ 275 (394)
+.|+| ....+|..+.++.+++ .-++||.|-..
T Consensus 334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 99976 4566788888887643 23788887543
No 151
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.98 E-value=2.6e-05 Score=69.43 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=57.3
Q ss_pred ccccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 160 g~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (394)
+.+++||++.|||-+. +|+.++..| ...|+.|+..+.+. .++++.+++||
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~AD 81 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRAD 81 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSS
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------Ccccceeeecc
Confidence 3579999999999995 999999998 68899998775431 47889999999
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (394)
Q Consensus 239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~ 276 (394)
+|+.++.. .++|..+. +|+|+++||++.-..
T Consensus 82 IVVsa~G~----~~~i~~~~---ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 82 IVVSAVGK----PNLIKADW---IKPGAVVIDVGINYV 112 (160)
T ss_dssp EEEE-SSS----TT-B-GGG---S-TTEEEEE--CEEE
T ss_pred EEeeeecc----cccccccc---ccCCcEEEecCCccc
Confidence 99999862 55676654 489999999987554
No 152
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.98 E-value=2.8e-05 Score=74.55 Aligned_cols=102 Identities=23% Similarity=0.315 Sum_probs=66.1
Q ss_pred CeEEEEecChHHHHHHHHHHhcCC---cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
++|+|||+|.||+.+++.+ ...| .+|.+|||+.+.. +...+.| + .....+.++++.++|+|++
T Consensus 3 m~I~iIG~G~mG~~la~~l-~~~g~~~~~v~v~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~advVil 68 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGL-LASGVPAKDIIVSDPSPEKR-AALAEEY-------G-----VRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CEEEEEechHHHHHHHHHH-HhCCCCcceEEEEcCCHHHH-HHHHHhc-------C-----CeecCChHHHHhcCCEEEE
Confidence 5799999999999999987 4556 6899999987542 2221111 1 1123577888999999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (394)
|+|. .....++. .....+ +.++|.+.-|- ..+.|.+.+.
T Consensus 69 ~v~~-~~~~~v~~-~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 69 AVKP-QVMEEVLS-ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred EcCH-HHHHHHHH-HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 9983 23343332 222223 46788776654 4556665554
No 153
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.94 E-value=4.2e-05 Score=75.89 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=68.1
Q ss_pred CCeEEEEecChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
-+++||||.|.+|+..++.++..+ .-+|.+|||+.+.. +.+.+. +.+.+ ..+....+.++++++||+|++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~----~~~~g---~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALR----ASDYE---VPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhhC---CcEEEeCCHHHHhccCCEEEEe
Confidence 578999999999999777654333 35899999998763 222221 11111 1223357899999999999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
+|. ...++..+.+ |||+.+..++...
T Consensus 200 T~s---~~P~~~~~~l---~~g~~v~~vGs~~ 225 (325)
T TIGR02371 200 TPS---RKPVVKADWV---SEGTHINAIGADA 225 (325)
T ss_pred cCC---CCcEecHHHc---CCCCEEEecCCCC
Confidence 984 3566766544 8999999998543
No 154
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.93 E-value=4e-05 Score=75.94 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=65.2
Q ss_pred EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHH--hhhhhhhhcC----CCCccccccCCHHHHhcccCEEE
Q 016162 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--AYGQFLKANG----EQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
|||+|||+||+.+++.+...-+++|++.............. .|.......+ ....+.....++++++..+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999986444578887654432221111111 1211000000 00001112347999999999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
.|+| .+.+..+++.+..|+++++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9976 667789999999999999998753
No 155
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=4.8e-05 Score=73.96 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=64.8
Q ss_pred ccccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 160 g~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (394)
+.+++||++.|||.|. +|+.+|..| ...|++|+.+++.. .++.+.+++||
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aD 204 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQAD 204 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCC
Confidence 3579999999999998 999999997 68899999887621 35677789999
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
+|+.+++ .+. ++..+. +|+|++++|++-..
T Consensus 205 IvI~AtG-~~~---~v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 205 IIVGAVG-KPE---LIKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred EEEEccC-CCC---cCCHHH---cCCCCEEEEEEEee
Confidence 9999996 232 577655 68999999997543
No 156
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.89 E-value=7.1e-05 Score=73.87 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
..++++|||.|.+|+.+++.+...++ .+|++|+|++++. +++.+.+ ...+ .......++++.+.+||+|+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a-~~~a~~~----~~~g---~~~~~~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKA-EALAAEL----RAQG---FDAEVVTDLEAAVRQADIISC 195 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHH----HhcC---CceEEeCCHHHHHhcCCEEEE
Confidence 47899999999999999986543345 5899999987652 3333322 1111 112234688999999999988
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 286 (394)
++|.. ..++..+ .+++|+ +||+.-........|-..+
T Consensus 196 aT~s~---~pvl~~~---~l~~g~-~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 196 ATLST---EPLVRGE---WLKPGT-HLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred eeCCC---CCEecHH---HcCCCC-EEEeeCCCCcccccCCHHH
Confidence 88743 5566654 458998 5554333333333333333
No 157
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.88 E-value=5e-05 Score=74.85 Aligned_cols=99 Identities=20% Similarity=0.233 Sum_probs=65.0
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
+.|++|+|||.|.||+.+++.+ +..| .+|+++||+..... .+.+.| +. ......++.+.+.++|+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra~-~la~~~-------g~---~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERAE-ELAKEL-------GG---NAVPLDELLELLNEADVVI 243 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHHH-HHHHHc-------CC---eEEeHHHHHHHHhcCCEEE
Confidence 6899999999999999999997 5555 58999999875432 222222 21 1112235678889999999
Q ss_pred EcCCCChhhhhcccHHHHhcC-CCCcEEEEcCCCc
Q 016162 242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSRGP 275 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~m-k~gailIN~aRG~ 275 (394)
.++|.. +...++ +..++.. +++.++||++...
T Consensus 244 ~at~~~-~~~~~~-~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 244 SATGAP-HYAKIV-ERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred ECCCCC-chHHHH-HHHHhhCCCCCeEEEEeCCCC
Confidence 999843 332222 3333322 3577888887533
No 158
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.88 E-value=9.9e-05 Score=67.50 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=66.7
Q ss_pred ccccccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC----HHH
Q 016162 158 FVGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDE 232 (394)
Q Consensus 158 ~~g~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~e 232 (394)
+.|.+++||++.|||-+. +|+.+|..| ..-|++|+.+|.+.-.... +.+ .+++. .....+ +.+
T Consensus 55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~~~---~~~--~~~hs------~t~~~~~~~~l~~ 122 (197)
T cd01079 55 PYGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQVFT---RGE--SIRHE------KHHVTDEEAMTLD 122 (197)
T ss_pred ccCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccccc---ccc--ccccc------cccccchhhHHHH
Confidence 457799999999999987 589999988 6789999999753311000 000 00000 000013 778
Q ss_pred HhcccCEEEEcCCCChhhhhc-ccHHHHhcCCCCcEEEEcCC
Q 016162 233 VLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR 273 (394)
Q Consensus 233 ll~~aDiV~l~lPlt~~t~~l-i~~~~l~~mk~gailIN~aR 273 (394)
.+++||+|+.+++. .++ +..+.+ |+|+++||++-
T Consensus 123 ~~~~ADIVIsAvG~----~~~~i~~d~i---k~GavVIDVGi 157 (197)
T cd01079 123 CLSQSDVVITGVPS----PNYKVPTELL---KDGAICINFAS 157 (197)
T ss_pred HhhhCCEEEEccCC----CCCccCHHHc---CCCcEEEEcCC
Confidence 99999999999983 445 777666 79999999974
No 159
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.88 E-value=0.0006 Score=70.99 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=89.7
Q ss_pred CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHh--------hhhhhhhcCCCCccccccCCHHHHhcc
Q 016162 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLRE 236 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (394)
++|+|||+|.+|..+|-.|+. +.|.+|++||.+.... +....+ ..+.+.+ + ..-......++++.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-~~l~~g~~~~~e~gl~ell~~-~-~~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI-DAWNSDQLPIYEPGLDEVVKQ-C-RGKNLFFSTDVEKHVAE 78 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHcCCCccCCCCHHHHHHH-h-hcCCEEEEcCHHHHHhc
Confidence 579999999999999998853 4579999999887652 221110 0000000 0 00011223567888999
Q ss_pred cCEEEEcCCCChhh------------hhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec-cCC
Q 016162 237 ADVISLHPVLDKTT------------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV-FED 301 (394)
Q Consensus 237 aDiV~l~lPlt~~t------------~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV-~~~ 301 (394)
||++++|+| ||.. .++.. +..-+.+++|.++|.-|+-.+=-++.+..-|.+.. .|.-..| |.+
T Consensus 79 advi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~P 156 (473)
T PLN02353 79 ADIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNP 156 (473)
T ss_pred CCEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECC
Confidence 999999986 3321 12222 23456679999999999877766778888777531 1211122 455
Q ss_pred CCCCC----CccccCCceE
Q 016162 302 EPYMK----PGLSEMKNAI 316 (394)
Q Consensus 302 EP~~~----~~L~~~~nvi 316 (394)
|-+.+ ..+...|+|+
T Consensus 157 Erl~~G~a~~d~~~p~riV 175 (473)
T PLN02353 157 EFLAEGTAIEDLFKPDRVL 175 (473)
T ss_pred CccCCCCcccccCCCCEEE
Confidence 65532 2567777876
No 160
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.88 E-value=6.4e-05 Score=68.59 Aligned_cols=147 Identities=15% Similarity=0.190 Sum_probs=78.2
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhh--------hhhhhhcCCCCccccccCCHHHHhccc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA 237 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (394)
++|+|||+|.+|..+|..+ ...|.+|++||.+.... +...++. .+.+.+.. ..-+.....+.++.+.+|
T Consensus 1 M~I~ViGlGyvGl~~A~~l-A~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAAL-AEKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHH-HHTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHH-HhCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence 5899999999999999998 48899999999987642 2111100 00001000 001122345788889999
Q ss_pred CEEEEcCCCChhhh-h------cc--cHHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHcCCcceEEee-ccCCCCCCC
Q 016162 238 DVISLHPVLDKTTY-H------LI--NKERLATMKKEAILVNCSRGPVIDEVALV-EHLKQNPMFRVGLD-VFEDEPYMK 306 (394)
Q Consensus 238 DiV~l~lPlt~~t~-~------li--~~~~l~~mk~gailIN~aRG~~vde~aL~-~aL~~g~l~gaalD-V~~~EP~~~ 306 (394)
|++++|+| ||... + +. -+...+.++++.++|.-|+-.+=-++.+. ..|++....+.-++ +|.+|-+..
T Consensus 78 dv~~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~ 156 (185)
T PF03721_consen 78 DVVFICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLRE 156 (185)
T ss_dssp SEEEE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------T
T ss_pred ceEEEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCC
Confidence 99999998 44322 2 21 13455667899999999997776666444 44443222111122 245565532
Q ss_pred ----CccccCCceE
Q 016162 307 ----PGLSEMKNAI 316 (394)
Q Consensus 307 ----~~L~~~~nvi 316 (394)
..+...|+|+
T Consensus 157 G~a~~d~~~~~rvV 170 (185)
T PF03721_consen 157 GRAIEDFRNPPRVV 170 (185)
T ss_dssp TSHHHHHHSSSEEE
T ss_pred CCcchhccCCCEEE
Confidence 2467778886
No 161
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.87 E-value=0.00046 Score=66.38 Aligned_cols=203 Identities=19% Similarity=0.246 Sum_probs=122.8
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--cccc-HHHHHHhcccCCcEEEEcccCccccch
Q 016162 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWG-ETLFAALSRAGGKAFSNMAVGYNNVDV 102 (394)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~-~~~l~~l~~l~~k~I~~~g~G~d~id~ 102 (394)
+..++.|+..+....++ ..+.+|+.+.+. +..++|++..+ ..++ ..++++...- | -+|.+--
T Consensus 53 k~~~~iGi~~~~~~l~~-~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~--K-------DVDG~hp 122 (283)
T COG0190 53 KAAEEIGIASELYDLPE-DITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPE--K-------DVDGFHP 122 (283)
T ss_pred HHHHHcCCeeEEEeCCC-cCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcC--C-------CccccCh
Confidence 33455687777666544 357888777663 25799998764 2344 2344433221 2 1222211
Q ss_pred hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChH-HHHHH
Q 016162 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA 181 (394)
Q Consensus 103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~vA 181 (394)
...|-...+ +...-..++.-++-+ +| ..+.+++||++.|||-++| |+.+|
T Consensus 123 ---~N~g~L~~~-~~~~~PCTp~gi~~l----l~---------------------~~~i~l~Gk~~vVVGrS~iVGkPla 173 (283)
T COG0190 123 ---YNLGKLAQG-EPGFLPCTPAGIMTL----LE---------------------EYGIDLRGKNVVVVGRSNIVGKPLA 173 (283)
T ss_pred ---hHhcchhcC-CCCCCCCCHHHHHHH----HH---------------------HhCCCCCCCEEEEECCCCcCcHHHH
Confidence 111222223 333333444443322 22 1235899999999999986 88999
Q ss_pred HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
..| ..-+++|.+.... ..++.+..++||+|+.++- -.++|..+.+
T Consensus 174 ~lL-~~~naTVtvcHs~----------------------------T~~l~~~~k~ADIvv~AvG----~p~~i~~d~v-- 218 (283)
T COG0190 174 LLL-LNANATVTVCHSR----------------------------TKDLASITKNADIVVVAVG----KPHFIKADMV-- 218 (283)
T ss_pred HHH-HhCCCEEEEEcCC----------------------------CCCHHHHhhhCCEEEEecC----Cccccccccc--
Confidence 998 6789999887542 1478889999999999985 2566766554
Q ss_pred CCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHH
Q 016162 262 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 328 (394)
Q Consensus 262 mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~ 328 (394)
|+|+++||++--.+-+ +++. =||-..+ .....-.+||--||--+=+
T Consensus 219 -k~gavVIDVGinrv~~----------~kl~---GDVdf~~-------v~~~a~~iTPVPGGVGPmT 264 (283)
T COG0190 219 -KPGAVVIDVGINRVND----------GKLV---GDVDFDS-------VKEKASAITPVPGGVGPMT 264 (283)
T ss_pred -cCCCEEEecCCccccC----------CceE---eeccHHH-------HHHhhcccCCCCCccCHHH
Confidence 8999999998644322 4433 3664332 1223347888877765543
No 162
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.87 E-value=0.0001 Score=68.79 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=64.2
Q ss_pred CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
++|+||| .|+||+.+|+.| ...|.+|++++|+.+.. +.....+...+...+. .... ...+..+.++.+|+|++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L-~~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~-~~~~-~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRL-AKAGNKIIIGSRDLEKA-EEAAAKALEELGHGGS-DIKV-TGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHH-HhCCCEEEEEEcCHHHH-HHHHHHHHhhccccCC-CceE-EEeChHHHHhcCCEEEEEC
Confidence 3799997 999999999998 56789999999987542 2211111100110110 0001 1235678899999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v 277 (394)
|. .....++ ++.-..++ +.++|+++-|--.
T Consensus 77 p~-~~~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 77 PW-DHVLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred CH-HHHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 93 3333433 22223343 5899999877443
No 163
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.85 E-value=0.0001 Score=73.07 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=73.1
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-CCC----CccccccCCHHHHhcccCEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQ----PVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~ell~~aDiV 240 (394)
++|+|||.|.||..+|..| ...|.+|.+|||.... +.. ...+-..... +.. ........+. +.+..+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L-~~~G~~V~~~~r~~~~--~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRL-AAAGADVTLIGRARIG--DEL-RAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHH-HhcCCcEEEEecHHHH--HHH-HhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 4799999999999999998 5669999999986421 111 1110000000 000 0001112344 567899999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l 291 (394)
++++|. ++....+ ......++++.++|.+..| +...+.+.+.+...++
T Consensus 78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 999984 4455554 4455667899999988654 4455667777665444
No 164
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.85 E-value=3.9e-05 Score=78.79 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=69.0
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+.|++++|+|.|.||+.+++.+ ...|+ +|++++|+.... ..+...+ +. ......++.+.+..+|+|
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~---~~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEF-------GG---EAIPLDELPEALAEADIV 246 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CC---cEeeHHHHHHHhccCCEE
Confidence 47899999999999999999997 68897 899999987543 2222222 11 111224567778999999
Q ss_pred EEcCCCChhhhhcccHHHHhcC-----CCCcEEEEcCCCc
Q 016162 241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGP 275 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~m-----k~gailIN~aRG~ 275 (394)
+.|+| ....++..+.++.+ .++.++||.+-..
T Consensus 247 I~aT~---s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 247 ISSTG---APHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred EECCC---CCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 99987 33455777777553 3467888887533
No 165
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.85 E-value=0.00011 Score=58.45 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=53.1
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
..+++++++|+|.|.+|+.+++.+ ... +.+|++||+ |+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di 57 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI 57 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence 358899999999999999999998 566 567766531 99
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
++.+.+. .+++.++..+.+++++++++++
T Consensus 58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 58 LVTATPA----GVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence 9999873 3445566788899999999874
No 166
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.84 E-value=6.7e-05 Score=72.00 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
..+|||||+|+||+++++.+. .-+ -++++++|+.... + .....+..+++.++|+|
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~-~~~~~~~~~i~~~~~~~~~~---------------~-----~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIE-NSNIIGKENIYYHTPSKKNT---------------P-----FVYLQSNEELAKTCDII 61 (260)
T ss_pred CCEEEEECccHHHHHHHHHHH-hCCCCCcceEEEECCChhcC---------------C-----eEEeCChHHHHHhCCEE
Confidence 358999999999999999984 333 2589998865320 0 11234677888999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCC
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPH 320 (394)
++|+| ...+..++. +....++++.+ |.+.-| +..+.+.+.+...+ -...+-.+.| -++..-.++++|.
T Consensus 62 ilavk-p~~~~~vl~-~i~~~l~~~~i-IS~~aG--i~~~~l~~~~~~~~---~vvr~mPn~p----~~~g~g~t~i~~~ 129 (260)
T PTZ00431 62 VLAVK-PDLAGKVLL-EIKPYLGSKLL-ISICGG--LNLKTLEEMVGVEA---KIVRVMPNTP----SLVGQGSLVFCAN 129 (260)
T ss_pred EEEeC-HHHHHHHHH-HHHhhccCCEE-EEEeCC--ccHHHHHHHcCCCC---eEEEECCCch----hHhcceeEEEEeC
Confidence 99998 334555543 33334555544 554443 33455554443221 1122333322 2455566777774
No 167
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.82 E-value=0.00012 Score=70.36 Aligned_cols=100 Identities=24% Similarity=0.337 Sum_probs=72.2
Q ss_pred CeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
++|||||+|+||+.++.-+ ..-| -+|++.+|+.+.+. ...+.|+ .. ...+..++..++|+|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl-~~~g~~~~~~I~v~~~~~e~~~-~l~~~~g-------~~-----~~~~~~~~~~~advv~ 67 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGL-LKSGALPPEEIIVTNRSEEKRA-ALAAEYG-------VV-----TTTDNQEAVEEADVVF 67 (266)
T ss_pred ceEEEEccCHHHHHHHHHH-HhcCCCCcceEEEeCCCHHHHH-HHHHHcC-------Cc-----ccCcHHHHHhhCCEEE
Confidence 5899999999999999887 4555 68999999987653 2333442 11 1457788999999999
Q ss_pred EcCCCChhhhhcccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 016162 242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK 287 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk---~gailIN~aRG~~vde~aL~~aL~ 287 (394)
+++. |... ++.++.++ ++.++|.++=|-. .+.|.+++.
T Consensus 68 LavK--Pq~~----~~vl~~l~~~~~~~lvISiaAGv~--~~~l~~~l~ 108 (266)
T COG0345 68 LAVK--PQDL----EEVLSKLKPLTKDKLVISIAAGVS--IETLERLLG 108 (266)
T ss_pred EEeC--hHhH----HHHHHHhhcccCCCEEEEEeCCCC--HHHHHHHcC
Confidence 9997 4322 55566665 7999999987754 455665554
No 168
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.82 E-value=0.0002 Score=62.50 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=64.5
Q ss_pred ccccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 160 g~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (394)
|.+++||++.|+|-+. +|+.+|.+| ...|++|...+.+. .++++.+++||
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD 73 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD 73 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence 4689999999999875 578899887 67899998876421 36788999999
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
+|+.+++.. ++|+.+.+ |||+++||++...
T Consensus 74 IVvsAtg~~----~~i~~~~i---kpGa~Vidvg~~~ 103 (140)
T cd05212 74 VVVVGSPKP----EKVPTEWI---KPGATVINCSPTK 103 (140)
T ss_pred EEEEecCCC----CccCHHHc---CCCCEEEEcCCCc
Confidence 999998743 56877664 8999999998644
No 169
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.81 E-value=0.00026 Score=77.55 Aligned_cols=145 Identities=19% Similarity=0.145 Sum_probs=93.5
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~ 235 (394)
++|+|||.|.||..+|..++ ..|++|+.||++.+.... .......+.....+... .......+++ .++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 413 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFK 413 (737)
T ss_pred cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 57999999999999999874 669999999998865221 11111111111122111 0112234665 579
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCc
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~n 314 (394)
+||+|+=++|-+.+.+.-+-.+.=+.++++++|. |+|. ++...|...+... -+..++..|. |....||.+
T Consensus 414 ~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~~~~~p-~r~ig~Hff~--P~~~m~LvE--- 484 (737)
T TIGR02441 414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAAVSSRP-EKVIGMHYFS--PVDKMQLLE--- 484 (737)
T ss_pred cCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCCc-cceEEEeccC--CcccCceEE---
Confidence 9999999999888877767677778899999885 4433 5667788877653 4678888774 322234444
Q ss_pred eEEcCCC
Q 016162 315 AIVVPHI 321 (394)
Q Consensus 315 vilTPHi 321 (394)
|+-+|+.
T Consensus 485 vv~g~~T 491 (737)
T TIGR02441 485 IITHDGT 491 (737)
T ss_pred EeCCCCC
Confidence 5545543
No 170
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.77 E-value=0.00049 Score=75.06 Aligned_cols=131 Identities=12% Similarity=0.143 Sum_probs=84.9
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~ 235 (394)
++|+|||.|.||..+|..++...|++|+.||++.+..... .....-+.....+... ......++++ .++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence 5799999999999999986434799999999987642111 1111111111111110 0112235664 579
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~ 300 (394)
.||+|+=++|-+.+.+.-+-++.-+.++++++|...+.+ +....|.++++. .-+..++..|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCC
Confidence 999999999988887776667777788999888544332 445667777754 34577777774
No 171
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.77 E-value=0.00014 Score=70.85 Aligned_cols=120 Identities=12% Similarity=0.207 Sum_probs=72.8
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-CCCCccccccCCHHHHhcccCEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
.+|+|||.|.||..+|..|+ ..|.+|+.|+| .+. .+...+ .+-..... +..........+.++....+|+|++|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PKR-AKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCCCceEEEec-HHH-HHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 37999999999999999984 56899999998 432 222111 10000000 000000111345667778999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ 292 (394)
|. .++...+ +..-...+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 77 k~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 77 KA-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred cc-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 94 3444443 3333445778888887665 44566777777554443
No 172
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.73 E-value=0.00015 Score=71.19 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=69.3
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
...++++|||.|.+|+..++.++..++. +|.+|+|+..+. +++.+.+ ...+ .... ..+++++++++|+|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a-~~~a~~~----~~~~---~~~~-~~~~~~av~~aDiVi 193 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASA-AAFCAHA----RALG---PTAE-PLDGEAIPEAVDLVV 193 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHH----HhcC---CeeE-ECCHHHHhhcCCEEE
Confidence 3567999999999999999987444664 799999997653 3333332 1111 1111 368899999999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
.|+|.+ ..+|.. .+|||+.++.++.-.
T Consensus 194 taT~s~---~Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 194 TATTSR---TPVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred EccCCC---CceeCc----cCCCCCEEEecCCCC
Confidence 999844 466754 269999999998543
No 173
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.73 E-value=0.00022 Score=68.45 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=69.3
Q ss_pred HHHHHH-hcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH
Q 016162 180 YARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (394)
Q Consensus 180 vA~~la-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~ 258 (394)
+|+.|+ .++..+|++||+++....... ..|... ....+ .+.++++|+|++|+|. ..+..++ ++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~---------~~g~~~---~~~~~-~~~~~~~DlvvlavP~-~~~~~~l-~~~ 65 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL---------ELGIID---EASTD-IEAVEDADLVVLAVPV-SAIEDVL-EEI 65 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH---------HTTSSS---EEESH-HHHGGCCSEEEE-S-H-HHHHHHH-HHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH---------HCCCee---eccCC-HhHhcCCCEEEEcCCH-HHHHHHH-HHh
Confidence 355552 244589999999987643321 123222 12233 5779999999999993 2344444 556
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------CCccccCCceEEcCCCC
Q 016162 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMKNAIVVPHIA 322 (394)
Q Consensus 259 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~----------~~~L~~~~nvilTPHia 322 (394)
-..+++|++++|++.-+.--.+++.+.+..+ . .+....|+. ...|+.-.++++||+-.
T Consensus 66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~-~-----~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 66 APYLKPGAIVTDVGSVKAPIVEAMERLLPEG-V-----RFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp HCGS-TTSEEEE--S-CHHHHHHHHHHHTSS-G-----EEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred hhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc-c-----ceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 6679999999999875543333444433311 2 333345652 23688889999999854
No 174
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.72 E-value=0.00014 Score=71.80 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=60.8
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
+++||||.|..|+.-++.++.-++. +|.+|+|++... +++.+. +.. .+..+....++++.+++||+|+.|+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~-~~~~~~----~~~---~~~~v~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERA-EAFAAR----LRD---LGVPVVAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHH-HHHHHH----HHC---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHH-HHHHHh----hcc---ccccceeccchhhhcccCCEEEEcc
Confidence 5899999999999999887555666 799999997542 333332 222 1333445679999999999999998
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~ 276 (394)
|.+..+ .+++.+. ++||+.++.++....
T Consensus 201 ~s~~~~-P~~~~~~---l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 201 PSTTPA-PVFDAEW---LKPGTHINAIGSYTP 228 (313)
T ss_dssp --SSEE-ESB-GGG---S-TT-EEEE-S-SST
T ss_pred CCCCCC-ccccHHH---cCCCcEEEEecCCCC
Confidence 855432 6777654 589999999987544
No 175
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.71 E-value=0.0001 Score=71.27 Aligned_cols=96 Identities=27% Similarity=0.372 Sum_probs=68.0
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
-|.||||+|||||+-|..=|..| +--|.+|++--|.....-+. ....| + ...+.+|++++||+|.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~k--------A~~dG-----f-~V~~v~ea~k~ADvim 79 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKK--------AKEDG-----F-KVYTVEEAAKRADVVM 79 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHH--------HHhcC-----C-EeecHHHHhhcCCEEE
Confidence 58999999999999999999998 78888876554433321111 11112 2 2468999999999999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG 274 (394)
+.+|.. ....++..+.-..|++|+.| -.|+|
T Consensus 80 ~L~PDe-~q~~vy~~~I~p~Lk~G~aL-~FaHG 110 (338)
T COG0059 80 ILLPDE-QQKEVYEKEIAPNLKEGAAL-GFAHG 110 (338)
T ss_pred EeCchh-hHHHHHHHHhhhhhcCCceE-Eeccc
Confidence 999943 34556666777888988844 44444
No 176
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.69 E-value=0.00064 Score=74.36 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=86.4
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~ 235 (394)
++|+|||.|.||..+|..++ ..|++|+.||++.+.... +..+.+-+.+...|... .......+++ .++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFE 391 (715)
T ss_pred ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 68999999999999999975 669999999998765211 11111111111222111 0112234664 479
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~ 300 (394)
.||+|+=++|-+.+.+.-+-.+.-+.++++++|...+. .+....|.+++.. .-+..++..|.
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 392 RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTS--TISISLLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCC-CccEEEEecCC
Confidence 99999999998888877776777788999998855433 3455677777764 34677777774
No 177
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.0014 Score=65.65 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=117.1
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH---hcccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l 242 (394)
..+|+||+|.||+.+|..+ ...|.+|.+|+|+.++..+ +..+ .+.. .....+.+++|+ ++.=--|++
T Consensus 4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~ktd~-f~~~-------~~~~-k~i~~~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKTDE-FLAE-------RAKG-KNIVPAYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHHHH-HHHh-------CccC-CCccccCcHHHHHHHhcCCceEEE
Confidence 4699999999999999998 5889999999999876433 3322 1111 112234577776 445556666
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia 322 (394)
++-...-....| +..+..|.+|=++||-+...--|+..-.++|.+..+.+.+.-|.-.|--. +. -|.+ |-
T Consensus 74 MVkAG~~VD~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA---~~-GPSi-----Mp 143 (473)
T COG0362 74 MVKAGTPVDAVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGA---RH-GPSI-----MP 143 (473)
T ss_pred EEecCCcHHHHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccc---cc-CCCc-----CC
Confidence 664321112223 67788899999999999999999999999999999999999999887532 11 2433 34
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016162 323 SASKWTREGMATLAALNVLGKIKGYPIW 350 (394)
Q Consensus 323 ~~t~~~~~~~~~~~~~ni~~~l~g~~~~ 350 (394)
|.+.++++.+.-+. +.|-+-..|+|.-
T Consensus 144 GG~~eay~~v~pil-~~IaAk~~g~pCc 170 (473)
T COG0362 144 GGQKEAYELVAPIL-TKIAAKVDGEPCC 170 (473)
T ss_pred CCCHHHHHHHHHHH-HHHHhhcCCCCce
Confidence 77889998887655 6677767787753
No 178
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.68 E-value=0.00028 Score=68.58 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=72.5
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
++|+|||.|.||+.+|..| ...|.+|..++|+.+. .+...+. +-... .+..........+++++ ..+|+|++++|
T Consensus 1 m~I~IiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~-~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~-~~~d~vila~k 75 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAAL-AQAGHDVTLVARRGAH-LDALNEN-GLRLE-DGEITVPVLAADDPAEL-GPQDLVILAVK 75 (304)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCeEEEEECChHH-HHHHHHc-CCccc-CCceeecccCCCChhHc-CCCCEEEEecc
Confidence 3799999999999999998 4668999999986543 2221110 00000 01100001123456665 89999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 016162 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (394)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~g 293 (394)
. .++..++ +.....+.+++.+|....| +-.++.+.+.+....+.+
T Consensus 76 ~-~~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 76 A-YQLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred c-ccHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 4 3444443 3344456778888888776 334566666665544443
No 179
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.68 E-value=0.00069 Score=74.06 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=86.9
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~ 235 (394)
++|+|||.|.||..+|..++...|++|+.||++.+..... ..+...+.+...+... .......++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 6899999999999999987436799999999987542111 1111111111122111 011223456 4579
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~ 300 (394)
.||+|+=++|-+.+.+.-+-++.=+.++|+++|...+. .+....|.+.+.. .-+..++..|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS--~l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTS--SLPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHHhcCc-ccceEEEecCC
Confidence 99999999998888777666777778999999965444 3556677777754 34677887774
No 180
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.67 E-value=0.00076 Score=73.70 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=85.6
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~ 235 (394)
++|+|||.|.||..+|..++ ..|++|+.||++.+.... +....+.+...+.+... .......+++ .++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD 391 (714)
T ss_pred ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 57999999999999999975 669999999998765221 11111111111122110 0112234564 479
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~ 300 (394)
+||+|+=++|-+.+.+.-+-++.-+.++++++|-..+. .++..+|..+++. .-+..++-.|.
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS--~l~i~~ia~~~~~-p~r~ig~Hff~ 453 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTS--TISISLLAKALKR-PENFCGMHFFN 453 (714)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHhhcCC-cccEEEEecCC
Confidence 99999999998888776666777788899999854433 3455677777754 34577777774
No 181
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.66 E-value=0.00028 Score=64.41 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=66.1
Q ss_pred cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccc---cccCCHHHHhcc
Q 016162 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLRE 236 (394)
Q Consensus 161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~ 236 (394)
..++++++.|+|. |.+|+.+++.+ ...|.+|+.++|+... .+...+.+.+ ..+. .... ....++.+.+++
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l-~~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~~-~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLL-AREGARVVLVGRDLER-AQKAADSLRA---RFGE-GVGAVETSDDAARAAAIKG 97 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHHHh---hcCC-cEEEeeCCCHHHHHHHHhc
Confidence 4688999999995 99999999998 4678999999998643 2222222110 0011 0111 111234577899
Q ss_pred cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (394)
Q Consensus 237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v 277 (394)
+|+|+.+.|....+ .+.. -...+++.+++|+.+...+
T Consensus 98 ~diVi~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred CCEEEECCCCCcee--chhh--hcccCceeEEEEccCCCCC
Confidence 99999998854421 1111 1124557788888776654
No 182
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.64 E-value=0.00022 Score=69.16 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=53.2
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+.++++.|+|.|.+|+.+++.| ...| .+|++++|+..+. ++..+.+. ... ...+ ..++.+.+..+|+|
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~~----~~~--~~~~--~~~~~~~~~~~Div 189 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLFG----ALG--KAEL--DLELQEELADFDLI 189 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhh----hcc--ceee--cccchhccccCCEE
Confidence 57899999999999999999998 6889 6999999987542 22222221 000 0111 01345677899999
Q ss_pred EEcCCCC
Q 016162 241 SLHPVLD 247 (394)
Q Consensus 241 ~l~lPlt 247 (394)
+.++|..
T Consensus 190 InaTp~g 196 (278)
T PRK00258 190 INATSAG 196 (278)
T ss_pred EECCcCC
Confidence 9999954
No 183
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.60 E-value=0.00027 Score=70.31 Aligned_cols=102 Identities=28% Similarity=0.382 Sum_probs=71.5
Q ss_pred cccccCCCeEEEEec-ChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (394)
Q Consensus 159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (394)
.|.++.|+++.|+|. |.||+.+++.|+...| .+++.++|+... ......++ +. ....++++.+.+
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el-------~~-----~~i~~l~~~l~~ 215 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAEL-------GG-----GKILSLEEALPE 215 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHh-------cc-----ccHHhHHHHHcc
Confidence 345799999999998 8999999999843455 489999987543 22211111 00 122468899999
Q ss_pred cCEEEEcCCCChhhhh-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 016162 237 ADVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE 279 (394)
Q Consensus 237 aDiV~l~lPlt~~t~~-li~~~~l~~mk~gailIN~aRG~~vde 279 (394)
+|+|+.+.-. ... +++.+.+ +++.++||.|+..=||.
T Consensus 216 aDiVv~~ts~---~~~~~I~~~~l---~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 216 ADIVVWVASM---PKGVEIDPETL---KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CCEEEECCcC---CcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence 9999877642 234 3777654 79999999999776663
No 184
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00017 Score=70.65 Aligned_cols=135 Identities=14% Similarity=0.217 Sum_probs=93.6
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEEEEc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH 243 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~ 243 (394)
-.+|||||+|++|+-.|+.+ ...|..|+..||..-...+ ..|+ ...++.+++++ ++.|+|.+|
T Consensus 52 tl~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa---~~yg------------~~~ft~lhdlcerhpDvvLlc 115 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAA---EKYG------------SAKFTLLHDLCERHPDVVLLC 115 (480)
T ss_pred ceEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHH---HHhc------------ccccccHHHHHhcCCCEEEEE
Confidence 35799999999999999997 7889999999987633221 2232 12456788876 679999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC--C---CccccCCceEEc
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--K---PGLSEMKNAIVV 318 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~--~---~~L~~~~nvilT 318 (394)
+. --.+..++-.--++++|.|++++++-.-+...-.++.+-|-+- .|.....|.. + +....+|=|+.-
T Consensus 116 ts-ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydk 188 (480)
T KOG2380|consen 116 TS-ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDK 188 (480)
T ss_pred eh-hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEE
Confidence 85 2344445444457778999999999887777777777666543 3666667753 2 234456766665
Q ss_pred CCCC
Q 016162 319 PHIA 322 (394)
Q Consensus 319 PHia 322 (394)
=.++
T Consensus 189 vRig 192 (480)
T KOG2380|consen 189 VRIG 192 (480)
T ss_pred eecc
Confidence 5554
No 185
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.59 E-value=0.00049 Score=68.27 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=67.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
..++++|||.|.+|+..++.++...+. +|.+|||++++. +++.+.+ ... .+.....+.+++++++++|+|++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a-~~~~~~~----~~~--~~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKA-YAFAQEI----QSK--FNTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHh--cCCcEEEeCCHHHHHhcCCEEEE
Confidence 467999999999999988776444565 799999987653 3332222 111 11122335788999999999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG 274 (394)
|+|.. ..++. +.+|+|+.++.++..
T Consensus 199 aT~s~---~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 199 VTNAK---TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred ccCCC---CcchH----HhcCCCcEEEecCCC
Confidence 99844 34554 445999999998764
No 186
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.58 E-value=0.00035 Score=69.04 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=69.6
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
-++++|||.|..++.-++.+...+.. +|.+|+|+++.. +++.+. +++.+ .......+.++.++.||+|+.+
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~----~~~~~---~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQY----AQALG---FAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhcC---CcEEEECCHHHHhcCCCEEEEe
Confidence 56999999999999999877545544 799999998763 222221 22212 2233357899999999999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG 274 (394)
+| .+..+|+.+.+ |||+.++.++..
T Consensus 200 T~---s~~P~~~~~~l---~~G~hi~~iGs~ 224 (315)
T PRK06823 200 TP---SREPLLQAEDI---QPGTHITAVGAD 224 (315)
T ss_pred cC---CCCceeCHHHc---CCCcEEEecCCC
Confidence 87 44577877654 799999999753
No 187
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.58 E-value=0.0017 Score=63.80 Aligned_cols=129 Identities=25% Similarity=0.284 Sum_probs=84.6
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH---HHHhhhhhhhhcCCCCc--------cccccCCHHHH
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQPV--------TWKRASSMDEV 233 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~l~el 233 (394)
-+++||||.|.||+.+|..++. -|.+|+.+|++....... ..+.+. .+...|.... ......++. .
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~-k~~~~g~l~~~~~~~~l~~i~~~~~~~-~ 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLE-KLVEKGKLTEEEADAALARITPTTDLA-A 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHH-HHHhcCCCChhhHHHHHhhccccCchh-H
Confidence 4799999999999999999754 569999999995432111 111111 1111221111 011123333 6
Q ss_pred hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (394)
Q Consensus 234 l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gail-IN~aRG~~vde~aL~~aL~~g~l~gaalDV~~ 300 (394)
++.||+|+=.+|-+-+.++-+-++.=...+|+++| -|+|+ +.-.+|.++++ ..=+..++-.|.
T Consensus 80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfN 143 (307)
T COG1250 80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFN 143 (307)
T ss_pred hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccC
Confidence 89999999999988887776666666778999998 56555 44567788874 444678887775
No 188
>PRK06046 alanine dehydrogenase; Validated
Probab=97.57 E-value=0.00048 Score=68.37 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
-+++||||.|.+|+..++.++...+. +|.+|||+.... +++.+.+. . ..+.....+.+++++++ +|+|++|
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~~----~--~~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERMS----S--VVGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHHH----h--hcCceEEEeCCHHHHhh-CCEEEEe
Confidence 46899999999999999887544555 678899987543 22322221 1 01112223568899987 9999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
+|.+ ..++..+.+ |+|+.+..++.
T Consensus 201 Tps~---~P~~~~~~l---~~g~hV~~iGs 224 (326)
T PRK06046 201 TPSR---KPVVKAEWI---KEGTHINAIGA 224 (326)
T ss_pred cCCC---CcEecHHHc---CCCCEEEecCC
Confidence 9843 577776655 89999888874
No 189
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.51 E-value=0.001 Score=62.63 Aligned_cols=117 Identities=21% Similarity=0.308 Sum_probs=72.1
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEE-cCc---------hhhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (394)
.++.|+++.|.|+|++|+.+|+.| ..+|++|++. |.. ....+.+..+..+... +... ....+.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~---~~~~---~~~~~~ 99 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVL---GFPG---AERITN 99 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcc---cCCC---ceecCC
Confidence 468999999999999999999998 6899999944 441 1122222222111100 0000 011122
Q ss_pred HHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (394)
Q Consensus 231 ~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ 292 (394)
++++ ..||+++-|.+ .+.++.+...+++ =.+++-.+.+.+- ..-.+.|+++.+.
T Consensus 100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 3332 47899998876 5667888888886 4567777777763 4445677766543
No 190
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.49 E-value=0.00044 Score=69.12 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (394)
Q Consensus 177 G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~ 256 (394)
|..+|..| ...|.+|++||++.....+...+ .+...| .....+..+++.+||+|++|+|....+..++ .
T Consensus 32 G~~MA~~L-a~aG~~V~v~Dr~~~~l~~~~~~----~l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~ 100 (342)
T PRK12557 32 GSRMAIEF-AEAGHDVVLAEPNRSILSEELWK----KVEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K 100 (342)
T ss_pred HHHHHHHH-HhCCCeEEEEECCHHHhhHHHHH----HHHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence 78999988 46789999999987532111111 011222 1223578888999999999999655467776 4
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 016162 257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK 287 (394)
Q Consensus 257 ~~l~~mk~gailIN~aRG~~vde-~aL~~aL~ 287 (394)
+....+++++++||++.+..... +.+.+.+.
T Consensus 101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence 67788899999999999877655 55556654
No 191
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.48 E-value=0.00086 Score=66.54 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=67.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
..++++|||.|.+|+..++.++...+. +|++|+|+..+. +++.+.+ ... .+..+....++++.+++||+|+.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a-~~~a~~~----~~~--~g~~v~~~~~~~~av~~aDiVvt 200 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKA-EALALQL----SSL--LGIDVTAATDPRAAMSGADIIVT 200 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHH----Hhh--cCceEEEeCCHHHHhccCCEEEE
Confidence 357999999999999999987435674 799999998653 2232222 110 11222335689999999999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
|+|.+ ..+|..+. +|+|+.+..++.
T Consensus 201 aT~s~---~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 201 TTPSE---TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred ecCCC---CcEecHHH---cCCCcEEEeeCC
Confidence 98853 46676554 589988877763
No 192
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.44 E-value=0.0013 Score=65.20 Aligned_cols=96 Identities=19% Similarity=0.247 Sum_probs=71.3
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
-++++|||.|..+..-.+.++.-++. +|.+|+|++... +++. ..++..+.. ......|.++++..||+|+.|
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a----~~l~~~~~~--~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFA----ARLRKRGGE--AVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHH----HHHHhhcCc--cceeccCHHHHhhcCCEEEEe
Confidence 45899999999999999887666776 799999998753 2222 223333322 123467899999999999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
+|.+. .++..+.+ +||+.+..++.
T Consensus 203 T~s~~---Pil~~~~l---~~G~hI~aiGa 226 (330)
T COG2423 203 TPSTE---PVLKAEWL---KPGTHINAIGA 226 (330)
T ss_pred cCCCC---CeecHhhc---CCCcEEEecCC
Confidence 98554 77777766 59999999884
No 193
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.44 E-value=0.0011 Score=63.89 Aligned_cols=111 Identities=22% Similarity=0.251 Sum_probs=69.3
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH-hcccCEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS 241 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~ 241 (394)
..+++++|+|.|.+|+.++..+ ...|++|++++|+..+. ++..+.+ ...+. . ...++++. +.++|+|+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~~-~~la~~~----~~~~~--~---~~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSKA-EELAERF----QRYGE--I---QAFSMDELPLHRVDLII 183 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHH----hhcCc--e---EEechhhhcccCccEEE
Confidence 5688999999999999999998 56789999999987542 2222221 11111 0 11233333 46799999
Q ss_pred EcCCCCh--hhhh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 242 LHPVLDK--TTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 242 l~lPlt~--~t~~-li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
.|+|..- .... .+. .+.++++.+++|+.-... ++ .|++..++.
T Consensus 184 natp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~ 229 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSL 229 (270)
T ss_pred ECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHC
Confidence 9999642 1111 122 344678888888877554 33 455555543
No 194
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=0.0029 Score=63.52 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=96.7
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH-HHHhhh---------hhhhhcCCCCccccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK-FVTAYG---------QFLKANGEQPVTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~l~ell~ 235 (394)
.+|||||+|-||-.+|-.++ .-|.+|++||.+...-..- ..+.|. ......|. .....+.++ ++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~----lraTtd~~~-l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGK----LRATTDPEE-LK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCC----ceEecChhh-cc
Confidence 79999999999999999874 7799999999987642110 000000 00111111 112234544 56
Q ss_pred ccCEEEEcCCCChhhh-------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CcceEEeecc---CCC
Q 016162 236 EADVISLHPVLDKTTY-------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVF---EDE 302 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~-------~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~l~gaalDV~---~~E 302 (394)
.||++++|+| ||-+. .+.+ +..-..+|+|.++|==|+-.+=-++.++..|.+. .=..+.-|.| .+|
T Consensus 84 ~~dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPE 162 (436)
T COG0677 84 ECDVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPE 162 (436)
T ss_pred cCCEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCcc
Confidence 9999999998 55433 1222 2244678999999988887777788888877664 1122334654 444
Q ss_pred CC-CC---CccccCCceEEcCCCCCCcHHHHHHH
Q 016162 303 PY-MK---PGLSEMKNAIVVPHIASASKWTREGM 332 (394)
Q Consensus 303 P~-~~---~~L~~~~nvilTPHia~~t~~~~~~~ 332 (394)
-. |. ..+.+.|+| |||.|+++.+.+
T Consensus 163 Rv~PG~~~~el~~~~kV-----IgG~tp~~~e~a 191 (436)
T COG0677 163 RVLPGNVLKELVNNPKV-----IGGVTPKCAELA 191 (436)
T ss_pred ccCCCchhhhhhcCCce-----eecCCHHHHHHH
Confidence 32 22 246677888 488887665443
No 195
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.41 E-value=0.00076 Score=67.44 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=66.8
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
-++++|||.|..++.-++.+..-+.. +|++|+|+++.. +++.+.+ ... +..+....++++.+++||+|+.+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~~----~~~---~~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARNL----AGP---GLRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHHH----Hhc---CCcEEEeCCHHHHHhcCCEEEEe
Confidence 46899999999999988776555555 799999998653 2333222 211 22233457899999999999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
+|. .+...+|..+.+ |||+.+.-++
T Consensus 201 T~S-~~~~Pvl~~~~l---kpG~hV~aIG 225 (346)
T PRK07589 201 TAD-KTNATILTDDMV---EPGMHINAVG 225 (346)
T ss_pred cCC-CCCCceecHHHc---CCCcEEEecC
Confidence 973 222356666544 8999877765
No 196
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.41 E-value=0.0007 Score=67.57 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=65.0
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhh--hhhhhhcCC-CCccccccCCHHHHhcccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--GQFLKANGE-QPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~ell~~aDiV~l 242 (394)
.+|+|||.|.+|..+|..|+ ..| +|..|.+++... +...+.. ...+. .+. .........++++.++.+|+|++
T Consensus 8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~~-~~i~~~~~~~~~l~-~~~~l~~~i~~t~d~~~a~~~aDlVil 83 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAETA-DDINDNHRNSRYLG-NDVVLSDTLRATTDFAEAANCADVVVM 83 (341)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHHH-HHHHhcCCCcccCC-CCcccCCCeEEECCHHHHHhcCCEEEE
Confidence 57999999999999999984 556 677787765432 1111100 00000 000 01111233578888999999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~ 276 (394)
++| +..++..+ ++.-..++++..+|++.-|=-
T Consensus 84 avp-s~~~~~vl-~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 84 GVP-SHGFRGVL-TELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred EeC-HHHHHHHH-HHHHhhcCCCCEEEEEEeCCc
Confidence 999 34445444 334455688888999888643
No 197
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.38 E-value=0.00089 Score=65.75 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=68.2
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
-+++||||.|..|+.-++.++.-++. +|.+|+|++.+. +++.+.+ .+. .+..+....++++.+..||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~~----~~~--~~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAERF----SKE--FGVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----HHh--cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 57999999999999988877544555 799999998653 2333322 211 122233457899999999999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
+|. +..+|..+.+ |||+.++-++.
T Consensus 190 T~s---~~P~~~~~~l---~pg~hV~aiGs 213 (301)
T PRK06407 190 TNS---DTPIFNRKYL---GDEYHVNLAGS 213 (301)
T ss_pred cCC---CCcEecHHHc---CCCceEEecCC
Confidence 873 4577877655 78887777664
No 198
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.35 E-value=0.0013 Score=66.24 Aligned_cols=111 Identities=21% Similarity=0.308 Sum_probs=67.0
Q ss_pred CCeEEEEecChHHHHHHHHHHhc------CCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-------CCCccccccCCHH
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQATRLEKFVTAYGQFLKANG-------EQPVTWKRASSMD 231 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~------~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~ 231 (394)
-++|+|||.|..|.++|..++.. ||.+|..|.++.........+.... .+.+ ..+.......+++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~--~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINT--KHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHh--cCCCcccCCCCcCCCceEEecCHH
Confidence 35899999999999999998543 3578888877753100000111000 0001 0111222346888
Q ss_pred HHhcccCEEEEcCCCChhhhhcccHHHHh--cCCCCcEEEEcCCCcccCH
Q 016162 232 EVLREADVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVIDE 279 (394)
Q Consensus 232 ell~~aDiV~l~lPlt~~t~~li~~~~l~--~mk~gailIN~aRG~~vde 279 (394)
++++.||+|++++| +...+.++ .+.-. .+++++++|+++-|=-.++
T Consensus 89 eav~~aDiIvlAVP-sq~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 89 EAVEDADLLIFVIP-HQFLESVL-SQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HHHhcCCEEEEEcC-hHHHHHHH-HHhccccccCCCCEEEEEeCCcccCC
Confidence 99999999999999 23334433 22223 4667889999887754443
No 199
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.35 E-value=0.0013 Score=65.04 Aligned_cols=104 Identities=25% Similarity=0.312 Sum_probs=63.0
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-CC-CCccccccCCHHHHh-cccCEEEEc
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVL-READVISLH 243 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~ell-~~aDiV~l~ 243 (394)
+|+|||.|.+|..+|..| ...|.+|..|+|+.... +...+. ....... +. .........++++.+ ..+|+|+++
T Consensus 2 kI~IiGaGa~G~ala~~L-~~~g~~V~l~~r~~~~~-~~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 2 KISILGAGSFGTAIAIAL-SSKKISVNLWGRNHTTF-ESINTK-RKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred EEEEECcCHHHHHHHHHH-HHCCCeEEEEecCHHHH-HHHHHc-CCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 699999999999999998 56789999999976431 211110 0000000 00 001111235677766 589999999
Q ss_pred CCCChhhhhcccHHHHh-cCCCCcEEEEcCCCc
Q 016162 244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGP 275 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~-~mk~gailIN~aRG~ 275 (394)
+| +..+...+ ++... .++++..+|.+.-|-
T Consensus 79 vk-s~~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 79 VP-TQQLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred eC-HHHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 99 34455444 23333 567777777776664
No 200
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.33 E-value=0.0012 Score=65.50 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=64.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
..++++|||.|.+|+..+..++...+ -+|.+|+|+.++. +++.+.+ .. ..+..+....++++++.+||+|+.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a-~~l~~~~----~~--~~g~~v~~~~d~~~al~~aDiVi~ 203 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKA-EAYAADL----RA--ELGIPVTVARDVHEAVAGADIIVT 203 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHH----hh--ccCceEEEeCCHHHHHccCCEEEE
Confidence 35799999999999998887643455 4799999987652 3333222 11 111222335789999999999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
++|.. ..++..+. +++|+.+..++
T Consensus 204 aT~s~---~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 204 TTPSE---EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred eeCCC---CcEecHHH---cCCCceEEeeC
Confidence 98843 45666654 46787666543
No 201
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.32 E-value=0.0024 Score=59.72 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=69.5
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCch---------hhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (394)
.++.|+++.|.|+|++|+.+|+.| ...|.+|++ .|.+. ....+. .... .+..........+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~-~~~~------~~~~~~~~~~~~~~ 90 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINY-AVAL------GGSARVKVQDYFPG 90 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHH-HHhh------CCccccCcccccCc
Confidence 468999999999999999999998 688886655 55543 022211 1111 01111000001122
Q ss_pred HHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (394)
Q Consensus 231 ~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~ 290 (394)
++++ ..||+++-|.+ .+.|+.+....++ -.+++-.+.+++-+ + -.+.|++..
T Consensus 91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~-a~~~L~~~G 143 (217)
T cd05211 91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD-E-ALRILHERG 143 (217)
T ss_pred ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH-H-HHHHHHHCC
Confidence 3332 47999999987 4478888877776 55777788887755 3 345555543
No 202
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.31 E-value=0.0011 Score=67.90 Aligned_cols=96 Identities=16% Similarity=0.267 Sum_probs=65.7
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+.|+++.|||.|.+|+.+++.| ...|. ++++++|+.... +.+.+.|+ . .....+.++.+.+.++|+|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~ra-~~La~~~~-------~--~~~~~~~~l~~~l~~aDiV 246 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEKA-QKITSAFR-------N--ASAHYLSELPQLIKKADII 246 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHhc-------C--CeEecHHHHHHHhccCCEE
Confidence 57899999999999999999998 57775 799999987542 33333221 0 1112235667889999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
+.|++. ...+|..+... .+.-++||.|=
T Consensus 247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 247 IAAVNV---LEYIVTCKYVG--DKPRVFIDISI 274 (414)
T ss_pred EECcCC---CCeeECHHHhC--CCCeEEEEeCC
Confidence 999873 35566655543 23356677664
No 203
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.31 E-value=0.00063 Score=63.10 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=63.5
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhcccCE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADV 239 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDi 239 (394)
-++.|+++.|||.|.+|..-++.| ..+|++|+++++...+......+ .+. +.+.. ... .+.+..+|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~~--i~~~~~~~~-~~dl~~~~l 72 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QGG--ITWLARCFD-ADILEGAFL 72 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cCC--EEEEeCCCC-HHHhCCcEE
Confidence 368999999999999999999997 68999999999987654433211 121 11211 112 345788999
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
|+.++. +++ +|.......++-.++||++
T Consensus 73 Vi~at~-d~~----ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 73 VIAATD-DEE----LNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EEECCC-CHH----HHHHHHHHHHHcCCEEEEC
Confidence 888865 332 3455555555556777753
No 204
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.30 E-value=0.0016 Score=65.95 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=70.4
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc-cccccCCHHHHhcccCEEE
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS 241 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~ 241 (394)
-++++|||.|..++.-++.++.-+. -+|.+|+|++.+. +++.+.+ .+.. .+. .+....+.+++++.||+|+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~~----~~~~-~~~~~v~~~~s~~eav~~ADIVv 228 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATWV----AETY-PQITNVEVVDSIEEVVRGSDIVT 228 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhc-CCCceEEEeCCHHHHHcCCCEEE
Confidence 4689999999999999988754453 3899999998653 3333322 1110 011 1333578999999999999
Q ss_pred EcCCCCh---hhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 242 LHPVLDK---TTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 242 l~lPlt~---~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
.|++.+. .+..+|..+.+ |||+.++.++.-+
T Consensus 229 taT~s~~~~~s~~Pv~~~~~l---kpG~hv~~ig~~e 262 (379)
T PRK06199 229 YCNSGETGDPSTYPYVKREWV---KPGAFLLMPAACR 262 (379)
T ss_pred EccCCCCCCCCcCcEecHHHc---CCCcEEecCCccc
Confidence 9998543 34577877655 7999887776533
No 205
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.29 E-value=0.0019 Score=63.80 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=58.7
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
.+|||+|+|+||+.+++.+++.-++++.+ +|++....... . .......+.++++.+.|+|++|+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~--~~v~~~~d~~e~l~~iDVViIct 68 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------E--TPVYAVADDEKHLDDVDVLILCM 68 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------c--CCccccCCHHHhccCCCEEEEcC
Confidence 58999999999999999874344888875 68875322111 0 11122346778889999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
|.... -+.....++.|.-+|+..
T Consensus 69 Ps~th-----~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 69 GSATD-----IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred CCccC-----HHHHHHHHHcCCCEEECC
Confidence 85432 134445567777777774
No 206
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.28 E-value=0.0011 Score=66.13 Aligned_cols=105 Identities=18% Similarity=0.311 Sum_probs=66.6
Q ss_pred eEEEEecChHHHHHHHHHHh-c------CCcEEEEEcCch---hhHHHHHHHhhhhhhhhcCC-------CCccccccCC
Q 016162 167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGE-------QPVTWKRASS 229 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~-~------~G~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 229 (394)
+|+|||.|+.|.++|..++. + |+.+|..|.+.. .....+ .+.. .+.+. .+.......+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~---~in~--~~~n~~ylpgi~Lp~~i~at~d 75 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTE---IINT--THENVKYLPGIKLPANLVAVPD 75 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHH---HHHh--cCCCccccCCCcCCCCeEEECC
Confidence 58999999999999998754 2 448999998732 111111 1110 01111 0111223468
Q ss_pred HHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016162 230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (394)
Q Consensus 230 l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 278 (394)
+++++..||+|++++| +...+.++ .+.-..++++..+|+++-|=-.+
T Consensus 76 l~eal~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 76 LVEAAKGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HHHHHhcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence 9999999999999999 33444443 34445678899999998875443
No 207
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.27 E-value=0.0016 Score=64.18 Aligned_cols=110 Identities=22% Similarity=0.310 Sum_probs=72.8
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHH-----hhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-----AYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
++|+|||.|.-|.++|+.+ ..-|.+|..|.+++....+ ... .| + ..-..+.......|++++++.||+|
T Consensus 2 ~kI~ViGaGswGTALA~~l-a~ng~~V~lw~r~~~~~~~-i~~~~~N~~y---L-p~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVL-ARNGHEVRLWGRDEEIVAE-INETRENPKY---L-PGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred ceEEEEcCChHHHHHHHHH-HhcCCeeEEEecCHHHHHH-HHhcCcCccc---c-CCccCCcccccccCHHHHHhcCCEE
Confidence 5899999999999999998 4667889988887643211 100 01 0 0001222233356899999999999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV 283 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~ 283 (394)
++.+| +...+..+. ..-..+++++.+|+++-|=-.+.-.+.
T Consensus 76 v~avP-s~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~t~~l~ 116 (329)
T COG0240 76 VIAVP-SQALREVLR-QLKPLLLKDAIIVSATKGLEPETGRLL 116 (329)
T ss_pred EEECC-hHHHHHHHH-HHhhhccCCCeEEEEeccccCCCcchH
Confidence 99999 344444432 222456899999999987655544444
No 208
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.25 E-value=0.0021 Score=63.55 Aligned_cols=131 Identities=18% Similarity=0.276 Sum_probs=74.3
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
+..++|+|||.|.+|..+|..+ ...| .++..||.+.........+.. +.....+ .........+.+ .++.||+|+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l-~~~~~~~l~L~Di~~~~~~g~~lDl~-~~~~~~~-~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLI-LQKNLGDVVLYDVIKGVPQGKALDLK-HFSTLVG-SNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHH-HHCCCCeEEEEECCCccchhHHHHHh-hhccccC-CCeEEEeCCCHH-HhCCCCEEE
Confidence 4567999999999999999886 4445 689999997643222112111 0000011 111222235666 679999999
Q ss_pred EcC--CCChh-hh--------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCcceEE--ee
Q 016162 242 LHP--VLDKT-TY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD 297 (394)
Q Consensus 242 l~l--Plt~~-t~--------~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~--~g~l~gaa--lD 297 (394)
++. |..+. ++ .++. .+.+....|.+++|+++...-+-...+.+.-. ..++.|.+ ||
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 998 54431 11 1111 12344456888999987644344444444322 34566555 55
No 209
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.24 E-value=0.002 Score=59.57 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=69.7
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCc---hhhHHHH----------HHHhhhhhhhhcCCCCcccc-
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK----------FVTAYGQFLKANGEQPVTWK- 225 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~---~~~~~~~----------~~~~~~~~~~~~~~~~~~~~- 225 (394)
..|..++|+|+|.|.+|..+|..|+ ..|. +++.+|+. .+..... ..+.....+.+... ...+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp-~~~i~~ 94 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP-YTEIEA 94 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC-CCEEEE
Confidence 4688999999999999999999984 6687 69999987 2110000 00001111111111 01111
Q ss_pred -----ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162 226 -----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270 (394)
Q Consensus 226 -----~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN 270 (394)
...++++++.++|+|+-| ..+++++.++.......+++..++..
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 112456678899999999 57889999998888888887766664
No 210
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.24 E-value=0.00087 Score=68.13 Aligned_cols=101 Identities=23% Similarity=0.250 Sum_probs=69.8
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
+|+++++.|||.|-||.-+|+.| .+.| .+|++.+|+..+..+ ..+.+ + ..+....++.+.+.++|+|
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA~~-La~~~-------~---~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERAEE-LAKKL-------G---AEAVALEELLEALAEADVV 242 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHHHH-HHHHh-------C---CeeecHHHHHHhhhhCCEE
Confidence 48999999999999999999998 5777 589999999876432 11221 2 1223346777889999999
Q ss_pred EEcCCCChhhhhcccHHHHhcC-C--CCcEEEEcCCCccc
Q 016162 241 SLHPVLDKTTYHLINKERLATM-K--KEAILVNCSRGPVI 277 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~m-k--~gailIN~aRG~~v 277 (394)
+.++. +...+|..+.+... + +.-++||.|=..-|
T Consensus 243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiavPRdi 279 (414)
T COG0373 243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAVPRDV 279 (414)
T ss_pred EEecC---CCccccCHHHHHHHHhcccCeEEEEecCCCCC
Confidence 99964 44666766655433 1 12477887754433
No 211
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.18 E-value=0.0015 Score=64.35 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=74.1
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhh-cCCCCc-cccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~ell~~aDiV~l~ 243 (394)
++|+|||.|.||..+|.+| ...|.+|.++.|....... ..+-.+.. .+.... ......+.+ .+..+|+|++|
T Consensus 6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila 79 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEAVR----ENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG 79 (313)
T ss_pred cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHHH----hCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence 5899999999999999998 5679999999886532211 11100000 010000 011112333 46789999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaal 296 (394)
++.. ++...+ +..-...++++.++....| +-.++.|.+.+-..++.++..
T Consensus 80 vK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~ 129 (313)
T PRK06249 80 LKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC 129 (313)
T ss_pred ecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence 9843 344332 2333446778888887665 456777777776666655543
No 212
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.16 E-value=0.0034 Score=61.10 Aligned_cols=78 Identities=19% Similarity=0.162 Sum_probs=53.2
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+.++++.|||.|.+|++++..| ...|+ +|+++||+..+. +...+.+. .... ........++.+.++++|+|
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~ka-~~la~~l~----~~~~-~~~~~~~~~~~~~~~~aDiV 196 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPARA-AALADELN----ARFP-AARATAGSDLAAALAAADGL 196 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHHH----hhCC-CeEEEeccchHhhhCCCCEE
Confidence 46789999999999999999997 57887 799999987543 22222211 1000 01112234556678899999
Q ss_pred EEcCCC
Q 016162 241 SLHPVL 246 (394)
Q Consensus 241 ~l~lPl 246 (394)
+.++|.
T Consensus 197 InaTp~ 202 (284)
T PRK12549 197 VHATPT 202 (284)
T ss_pred EECCcC
Confidence 999984
No 213
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.14 E-value=0.0018 Score=59.93 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=59.7
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
-++.|+++.|||.|.+|...++.| ...|++|++++|.......+..+ .+. +.+....--++-+..+|+|
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~--------~~~--i~~~~~~~~~~~l~~adlV 74 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVE--------EGK--IRWKQKEFEPSDIVDAFLV 74 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHh--------CCC--EEEEecCCChhhcCCceEE
Confidence 479999999999999999999987 67899999999876544333211 111 1111111113447889999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
+.++.. ++.. ......++.+ +++|++
T Consensus 75 iaaT~d-~elN----~~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 75 IAATND-PRVN----EQVKEDLPEN-ALFNVI 100 (202)
T ss_pred EEcCCC-HHHH----HHHHHHHHhC-CcEEEC
Confidence 998873 3332 2222223334 467764
No 214
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.14 E-value=0.0015 Score=60.82 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=62.2
Q ss_pred eEEEEecChHHHHHHHHHHhc-CCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 167 TVGVIGAGRIGSAYARMMVEG-FKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
+|||||+|.||+.+.+.+..+ .+. .|.+||++.++..+.. . . .+.....+++|++++.|+++=|.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~--------~--~---~~~~~~s~ide~~~~~DlvVEaA 68 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELE--------A--S---VGRRCVSDIDELIAEVDLVVEAA 68 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHH--------h--h---cCCCccccHHHHhhccceeeeeC
Confidence 799999999999999987323 234 4789999887643210 0 0 11112368999999999999886
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~a 281 (394)
. ++...-+ ..+.++.|.=+|=+|-|.+.|+.-
T Consensus 69 S--~~Av~e~---~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 69 S--PEAVREY---VPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred C--HHHHHHH---hHHHHhcCCCEEEEechhccChHH
Confidence 5 3332222 233345565566666677776543
No 215
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.13 E-value=0.0026 Score=62.59 Aligned_cols=127 Identities=16% Similarity=0.219 Sum_probs=72.9
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
++|+|||.|.+|..+|..++ ..|. +|+.+|...........+.+..... ...........+.++ +++||+|+++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~--~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPV--GGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhc--cCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 48999999999999999874 4443 8999998654322121121111000 001112222357777 79999999998
Q ss_pred CCChhhh------------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE--ee
Q 016162 245 VLDKTTY------------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD 297 (394)
Q Consensus 245 Plt~~t~------------~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~a--L~~g~l~gaa--lD 297 (394)
+. |... .++. .+.+....+++++|+++..-=+-...+.+. +...++.|.+ ||
T Consensus 78 g~-p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 78 GL-PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 72 2211 2221 123444457899999977444444444444 4445566665 66
No 216
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.13 E-value=0.00068 Score=55.75 Aligned_cols=89 Identities=25% Similarity=0.264 Sum_probs=59.0
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
.++|+++.|||.|.+|..-++.| ...|++|+++++.. ...++ . ..+.. ..+++-+..+|+|+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~-------------~--i~~~~-~~~~~~l~~~~lV~ 65 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG-------------L--IQLIR-REFEEDLDGADLVF 65 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT-------------S--CEEEE-SS-GGGCTTESEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh-------------H--HHHHh-hhHHHHHhhheEEE
Confidence 58999999999999999999997 79999999999985 11111 1 11111 23455688899999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
.+++ +++ +++.....++.-.+++|++-
T Consensus 66 ~at~-d~~----~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 66 AATD-DPE----LNEAIYADARARGILVNVVD 92 (103)
T ss_dssp E-SS--HH----HHHHHHHHHHHTTSEEEETT
T ss_pred ecCC-CHH----HHHHHHHHHhhCCEEEEECC
Confidence 8886 233 45555666665667888753
No 217
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.11 E-value=0.0017 Score=64.52 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=61.9
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
++.|+++.|||.|.||+.+++.| ...|. +|++.+|+.... .|.+ .....-+...++|+|
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~~------~~~~-------------~~~~~~~~~~~~DvV 230 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLTL------PYRT-------------VVREELSFQDPYDVI 230 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcccc------chhh-------------hhhhhhhcccCCCEE
Confidence 58999999999999999999998 67774 799999986421 1100 000111445789999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
+.|.-.|......+..+.++..++ -++||.|=..
T Consensus 231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPR 264 (338)
T PRK00676 231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPR 264 (338)
T ss_pred EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCC
Confidence 997533444455566666655433 3888876443
No 218
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.015 Score=57.59 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=116.1
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh---cccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l 242 (394)
..+|+||++.||++++-.+ ..-|+.|.+|+|+.++..+ +.. +++. +.......|++|++ +.--.|++
T Consensus 7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skvD~-fla------neak--~~~i~ga~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKVDE-FLA------NEAK--GTKIIGAYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhHHH-HHH------Hhhc--CCcccCCCCHHHHHHhcCCCcEEEE
Confidence 4689999999999999887 5889999999999876433 211 1111 12223456888874 45556666
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia 322 (394)
.+-...-...+| ++....|.+|-++||-+...--|+..=.+.|.+..+.+.+.-|.-.|.-... -|.+ +-
T Consensus 77 lvkAG~pVD~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~----GPSl-----Mp 146 (487)
T KOG2653|consen 77 LVKAGAPVDQFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARY----GPSL-----MP 146 (487)
T ss_pred EeeCCCcHHHHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccccccc----CCcc-----CC
Confidence 654333333334 6778889999999999999999999999999988899999999988764321 1211 23
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016162 323 SASKWTREGMATLAALNVLGKIKGYPIWG 351 (394)
Q Consensus 323 ~~t~~~~~~~~~~~~~ni~~~l~g~~~~~ 351 (394)
|.+.+++.++..++..-....-.|+|.-.
T Consensus 147 Gg~~~Awp~ik~ifq~iaakv~~~epCc~ 175 (487)
T KOG2653|consen 147 GGSKEAWPHIKDIFQKIAAKVSDGEPCCD 175 (487)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCee
Confidence 66788999887776554333346677433
No 219
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.05 E-value=0.0025 Score=66.53 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=51.7
Q ss_pred ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
+.++.+++++|+|.|.+|+.++..+ ...|++|++++|+..+. +...+.+ +.. .....++.+ +.++|+
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~-------~~~---~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRC-------QGK---AFPLESLPE-LHRIDI 393 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHh-------ccc---eechhHhcc-cCCCCE
Confidence 4568899999999999999999998 68899999999986542 2211111 100 011122222 578999
Q ss_pred EEEcCCCC
Q 016162 240 ISLHPVLD 247 (394)
Q Consensus 240 V~l~lPlt 247 (394)
|++|+|..
T Consensus 394 VInatP~g 401 (477)
T PRK09310 394 IINCLPPS 401 (477)
T ss_pred EEEcCCCC
Confidence 99999954
No 220
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.05 E-value=0.0016 Score=55.01 Aligned_cols=96 Identities=16% Similarity=0.283 Sum_probs=53.6
Q ss_pred eEEEEe-cChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 167 TVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 167 tvGIIG-lG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
+|+||| .|.+|+.+.++|++...+++. ++++..... ..+...+. ...+.....+.. .+. +.+.++|+|++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~~~-~~~-~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-KPLSEVFP---HPKGFEDLSVED-ADP-EELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-SBHHHTTG---GGTTTEEEBEEE-TSG-HHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-Ceeehhcc---ccccccceeEee-cch-hHhhcCCEEEecC
Confidence 699999 999999999999766677754 444444110 01111110 000111111111 233 4459999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
|... ... +.... .++|..+||.+.
T Consensus 75 ~~~~-~~~-~~~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 75 PHGA-SKE-LAPKL---LKAGIKVIDLSG 98 (121)
T ss_dssp CHHH-HHH-HHHHH---HHTTSEEEESSS
T ss_pred chhH-HHH-HHHHH---hhCCcEEEeCCH
Confidence 9322 222 22222 478999999874
No 221
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.05 E-value=0.004 Score=60.77 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=50.2
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchh--hHHHHHHHhhhhhhhhcCC-CCc---cccccCCHHHHh
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGE-QPV---TWKRASSMDEVL 234 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~l~ell 234 (394)
++.|+++.|+|.|.+|++++..| ...|++ |++++|+.+ .+.++..+.+ ...+. ... .+....++++.+
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l----~~~~~~~~~~~~d~~~~~~~~~~~ 197 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKI----KQEVPECIVNVYDLNDTEKLKAEI 197 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHH----hhcCCCceeEEechhhhhHHHhhh
Confidence 46789999999999999999987 578985 999999862 2222222221 11110 000 011111344556
Q ss_pred cccCEEEEcCCC
Q 016162 235 READVISLHPVL 246 (394)
Q Consensus 235 ~~aDiV~l~lPl 246 (394)
..+|+|+.++|.
T Consensus 198 ~~~DilINaTp~ 209 (289)
T PRK12548 198 ASSDILVNATLV 209 (289)
T ss_pred ccCCEEEEeCCC
Confidence 778999999984
No 222
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.99 E-value=0.0048 Score=63.57 Aligned_cols=119 Identities=11% Similarity=0.092 Sum_probs=72.4
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEE-c----------CchhhHHHHHHHhhhhhhhhc-CCCCccccccC
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D----------LYQATRLEKFVTAYGQFLKAN-GEQPVTWKRAS 228 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 228 (394)
.++.|+||.|.|+|++|+.+|+.| ..+|++|++. | ..... +.++.+.....+... ...+. ...
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~~-L~~~k~~~~~~l~~~~~~~~~---~~i 302 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLEK-LKEIKEVRRGRISEYAEEFGA---EYL 302 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHH-HHHHHHhcCCchhhhhhhcCC---eec
Confidence 478999999999999999999998 7999999988 5 22221 122111100000000 00000 112
Q ss_pred CHHHHhc-ccCEEEEcCCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162 229 SMDEVLR-EADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM 291 (394)
Q Consensus 229 ~l~ell~-~aDiV~l~lPlt~~t~~li~~~~l~~mk--~gailIN~aRG~~vde~aL~~aL~~g~l 291 (394)
+.++++. .||+++-|.. .+.|+.+....++ +-.+++-.|.|.+ ..+ -.+.|.+..+
T Consensus 303 ~~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI 361 (445)
T PRK09414 303 EGGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGV 361 (445)
T ss_pred CCccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCc
Confidence 3344443 6999998875 6667777666663 3457788888887 444 3456666544
No 223
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.97 E-value=0.0021 Score=61.70 Aligned_cols=128 Identities=17% Similarity=0.254 Sum_probs=74.6
Q ss_pred EEEEec-ChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 168 vGIIGl-G~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
|+|||. |.+|..+|..++ ..| -++..||........ ......+.... . ........+++++.+++||+|++
T Consensus 1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l~~-~~~dl~~~~~~-~-~~~~i~~~~d~~~~~~~aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKLKG-VAMDLQDAVEP-L-ADIKVSITDDPYEAFKDADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccchH-HHHHHHHhhhh-c-cCcEEEECCchHHHhCCCCEEEE
Confidence 589999 999999999874 445 689999987643221 11111111111 1 12233334677889999999999
Q ss_pred cCCC--Ch---------hhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE-eecc
Q 016162 243 HPVL--DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG-LDVF 299 (394)
Q Consensus 243 ~lPl--t~---------~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~a--L~~g~l~gaa-lDV~ 299 (394)
+.-. .+ .+..++. .+.+....|.+++||++..-=+-...+.+. +...++.|.+ +|..
T Consensus 77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 6521 11 1111221 123444558999999964332333344444 4556788888 8754
No 224
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.97 E-value=0.0041 Score=51.74 Aligned_cols=67 Identities=25% Similarity=0.449 Sum_probs=48.3
Q ss_pred eEEEEecChHHHHHHHHHHhc-CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162 167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l 242 (394)
++||||+|.+|+...+.+... -+.++. ++|+++... +.+.+.| + ...+.|++++++ +.|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~ll~~~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEKY-------G-----IPVYTDLEELLADEDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHT-------T-----SEEESSHHHHHHHTTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHHh-------c-----ccchhHHHHHHHhhcCCEEEE
Confidence 799999999999998776433 366765 788887543 2222222 1 124679999998 7999999
Q ss_pred cCCC
Q 016162 243 HPVL 246 (394)
Q Consensus 243 ~lPl 246 (394)
++|.
T Consensus 69 ~tp~ 72 (120)
T PF01408_consen 69 ATPP 72 (120)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9994
No 225
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.96 E-value=0.0049 Score=59.16 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=62.8
Q ss_pred CeEEEEecChHHHHHHHHHHhc--CCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH-hcccCEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEG--FKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS 241 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~--~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~ 241 (394)
.+|||||+|.||+.+++.+..+ .++++ .+|++.+.. .+.+. +. .....+++++ ....|+|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~----------~~----~~~~~~l~~ll~~~~DlVV 67 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALA----------GR----VALLDGLPGLLAWRPDLVV 67 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhh----------cc----CcccCCHHHHhhcCCCEEE
Confidence 5899999999999999987433 23554 456665532 11110 11 2235689997 58899999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHc
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQ 288 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd---e~aL~~aL~~ 288 (394)
=|.. ++...-..... ++.|.-++=.|-|.+-| ++.|.++.++
T Consensus 68 E~A~--~~av~e~~~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 68 EAAG--QQAIAEHAEGC---LTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred ECCC--HHHHHHHHHHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 8876 33222222333 34566677777777777 4455555444
No 226
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.83 E-value=0.031 Score=55.23 Aligned_cols=121 Identities=12% Similarity=0.006 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchhh------HHHH---HHHhhhhhhhhcCCCC--------ccccccC--CHHHHhcc
Q 016162 176 IGSAYARMMVEGFKMNLIYYDLYQAT------RLEK---FVTAYGQFLKANGEQP--------VTWKRAS--SMDEVLRE 236 (394)
Q Consensus 176 IG~~vA~~la~~~G~~V~~~d~~~~~------~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~--~l~ell~~ 236 (394)
||..+|..++ ..|++|+.||+++.. ..+. ......+.+...|... ....... ++.+.+++
T Consensus 1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~ 79 (314)
T PRK08269 1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD 79 (314)
T ss_pred CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence 6889998874 669999999998832 1111 1111111122222211 0111122 36688999
Q ss_pred cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (394)
Q Consensus 237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~ 300 (394)
||+|+-++|-+.+.+.-+-.+..+.++++++|.. .-+.+....|.+.++. .=+..++..|.
T Consensus 80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS--ntS~~~~~~la~~~~~-p~r~~g~Hf~~ 140 (314)
T PRK08269 80 ADLVFEAVPEVLDAKREALRWLGRHVDADAIIAS--TTSTFLVTDLQRHVAH-PERFLNAHWLN 140 (314)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE--ccccCCHHHHHhhcCC-cccEEEEecCC
Confidence 9999999999998888777778888999999944 4445666777776653 22456666554
No 227
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.79 E-value=0.0014 Score=61.05 Aligned_cols=135 Identities=22% Similarity=0.293 Sum_probs=80.4
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-----CCcc-----------ccc
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-----QPVT-----------WKR 226 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~ 226 (394)
..=+.|+|+|.|.||+.+|+.. ..-|.+|+.+|.+... +.+..+.+.+++.+--. .+.. ...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~a-L~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~ 86 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDA-LSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT 86 (298)
T ss_pred ccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHH-HHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence 4456899999999999999985 6889999999998754 33333333333332110 1100 112
Q ss_pred cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (394)
Q Consensus 227 ~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP 303 (394)
..++.++++.+|+|+=++--+-+.+.-+-++.=..+|+.+++. |+|. +...+++.++++. -+.++|..|.+-|
T Consensus 87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~-srf~GlHFfNPvP 160 (298)
T KOG2304|consen 87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRP-SRFAGLHFFNPVP 160 (298)
T ss_pred cCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccCh-hhhceeeccCCch
Confidence 3455666677777764443222211111122223467777774 5554 4456778888854 5789999887555
No 228
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.78 E-value=0.0074 Score=51.32 Aligned_cols=110 Identities=25% Similarity=0.320 Sum_probs=60.8
Q ss_pred eEEEEec-ChHHHHHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 167 TVGVIGA-GRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
+|+|+|+ |+||+.+++.+...-|+++ -++|+..+....+ ..+ +-.+....+.....++++++.++|+|+-..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~g---~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DVG---ELAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BCH---HHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hhh---hhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 7999999 9999999999754478885 4667765221100 000 011122233334579999999999998765
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (394)
+|+...-.-+.. ++.|.-+|-..+|---++.+.++.+.
T Consensus 76 --~p~~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 76 --NPDAVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp ---HHHHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred --ChHHhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHh
Confidence 344322111222 23466777777776544444444444
No 229
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0054 Score=62.08 Aligned_cols=102 Identities=17% Similarity=0.092 Sum_probs=64.9
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
+++.|||.|.||+.+|..|++.-..+|++.||+..+...- ...... +.............+.+++++.|+|+.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i-~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARI-AELIGG---KVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHH-Hhhccc---cceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 6899999999999999998544338999999997653221 110000 000111111223457889999999999999
Q ss_pred CChhhhhcccHHHH-hcCCCCcEEEEcCCCccc
Q 016162 246 LDKTTYHLINKERL-ATMKKEAILVNCSRGPVI 277 (394)
Q Consensus 246 lt~~t~~li~~~~l-~~mk~gailIN~aRG~~v 277 (394)
..- +...+ +.++-|.-.++++-....
T Consensus 78 ~~~------~~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 78 PFV------DLTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred chh------hHHHHHHHHHhCCCEEEcccCCch
Confidence 432 22333 456777778888765543
No 230
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.73 E-value=0.011 Score=58.05 Aligned_cols=126 Identities=12% Similarity=0.257 Sum_probs=66.3
Q ss_pred CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
++|+|||.|.+|..+|..++. +++ +|+.+|+..+.......+.+ +.....+ .........+.+ .++.||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~-~~~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIA-EAAPVEG-FDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHH-hhhhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence 589999999999999998743 234 99999996654222111111 1011011 111222234564 479999999985
Q ss_pred --CCChh---------hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE
Q 016162 245 --VLDKT---------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG 295 (394)
Q Consensus 245 --Plt~~---------t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~a--L~~g~l~gaa 295 (394)
|..+. +..++. .+.+....+.+++|+++...=+....+.+. +...++.|.+
T Consensus 79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 79 GVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 32221 112221 112333346778888865433333333332 1123566664
No 231
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.70 E-value=0.008 Score=59.73 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=57.9
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l 242 (394)
.|++|+|+|+|-.|....+. |+++|++|+++|++..+... .. +.|........ .+.++++-..+|+++.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~e~--a~-------~lGAd~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKLEL--AK-------KLGADHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHHHH--HH-------HhCCcEEEEcCCchhhHHhHhhCcEEEE
Confidence 48999999999999988887 58999999999999875311 11 12221111111 1123333334888888
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNC 271 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~ 271 (394)
++| +.|- ...+..++++..++-+
T Consensus 236 tv~--~~~~----~~~l~~l~~~G~~v~v 258 (339)
T COG1064 236 TVG--PATL----EPSLKALRRGGTLVLV 258 (339)
T ss_pred CCC--hhhH----HHHHHHHhcCCEEEEE
Confidence 887 3322 3455566777666554
No 232
>PLN02477 glutamate dehydrogenase
Probab=96.70 E-value=0.013 Score=59.91 Aligned_cols=116 Identities=27% Similarity=0.334 Sum_probs=72.9
Q ss_pred ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCc----------hhhHHHHHHHhhhhhhhhcCCCCccccccC
Q 016162 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (394)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (394)
|.+++|+||.|.|+|++|+.+|+.| ...|++|++ .|.+ ... +.++.+..+. +. +..+ . ...
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~-L~~~k~~~g~-l~--~~~~--a-~~i 272 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPA-LRKHVAEGGG-LK--GFPG--G-DPI 272 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHH-HHHHHHhcCc-hh--cccc--c-eEe
Confidence 3479999999999999999999997 789999994 4543 221 1111111000 00 0000 0 111
Q ss_pred CHHHH-hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162 229 SMDEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (394)
Q Consensus 229 ~l~el-l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l 291 (394)
+.+++ ...||+++-|. ..+.|+++....++ -.+++-.+.+.+ ..+ -.+.|++..+
T Consensus 273 ~~~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI 328 (410)
T PLN02477 273 DPDDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGV 328 (410)
T ss_pred cCccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCc
Confidence 33333 35799988774 36678888888875 558888889888 433 3467776654
No 233
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.70 E-value=0.0063 Score=58.63 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=59.3
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
.+|||||+|.||+.+++.+.+.-++++. ++++....... .+.+ +. +...+.+++++-.+.|+|+.|.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~--~~~~-------~~---~~~~~~d~~~l~~~~DvVve~t 69 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAV--RRAL-------GE---AVRVVSSVDALPQRPDLVVECA 69 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHH--hhhh-------cc---CCeeeCCHHHhccCCCEEEECC
Confidence 4899999999999999987433356543 33433221110 0000 00 1223467888755689999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP 290 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde---~aL~~aL~~g~ 290 (394)
|.... . +-....++.|.-++-.+-|.+.|. +.|.++.+++.
T Consensus 70 ~~~~~-~----e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g 113 (265)
T PRK13303 70 GHAAL-K----EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGG 113 (265)
T ss_pred CHHHH-H----HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCC
Confidence 83322 1 222233445555555555544443 44566555544
No 234
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.63 E-value=0.0099 Score=56.99 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=45.5
Q ss_pred CeEEEEec-ChHHHHHHHHHHhcCCcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
.+|+|+|+ |+||+.+++.+...-++++.+ +|+....... ... .+...+.+++++++.+|+|+.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~------------~~~--~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG------------QGA--LGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------cCC--CCccccCCHHHhccCCCEEEEC
Confidence 47999998 999999998874344788664 7776543111 001 1122346899999899999988
Q ss_pred CC
Q 016162 244 PV 245 (394)
Q Consensus 244 lP 245 (394)
+|
T Consensus 68 t~ 69 (257)
T PRK00048 68 TT 69 (257)
T ss_pred CC
Confidence 76
No 235
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.63 E-value=0.014 Score=55.98 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=72.2
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEE-c-------Cchhh--HH---HHHHHhhhhhhhhc-CCCCccccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D-------LYQAT--RL---EKFVTAYGQFLKAN-GEQPVTWKR 226 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d-------~~~~~--~~---~~~~~~~~~~~~~~-~~~~~~~~~ 226 (394)
.+++|+|+.|-|||++|+.+|+.| ...|++|++. | +.--. .+ .+..+.....+... ...+ +..
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~-~a~- 110 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYG-TAK- 110 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCC-CCE-
Confidence 578999999999999999999998 7899999944 3 22100 01 00000000000000 0000 011
Q ss_pred cCCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162 227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM 291 (394)
Q Consensus 227 ~~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk--~gailIN~aRG~~vde~aL~~aL~~g~l 291 (394)
..+.++++ ..||+++-|. +.+.|+++....++ +-.+++-.+.|++-. +-.+.|.+..+
T Consensus 111 ~~~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI 171 (254)
T cd05313 111 YFEGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGV 171 (254)
T ss_pred EeCCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCc
Confidence 12334443 5799998774 47889998888774 455778888888754 33456666654
No 236
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.63 E-value=0.0072 Score=50.84 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=53.9
Q ss_pred eEEEEe-cChHHHHHHHHHHhcCCcEEEEE-cCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 167 tvGIIG-lG~IG~~vA~~la~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
++||+| .|.+|+.+++.+...=+.++.+. ++.... .......+.. ............+++ ..++|+|++|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSA-GKRVSEAGPH----LKGEVVLELEPEDFE--ELAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhc-CcCHHHHCcc----cccccccccccCChh--hcCCCEEEEcC
Confidence 589999 59999999998743337777666 433211 1111111100 000000000112232 25899999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 245 VLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 245 Plt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
|... +...+. .....+++|.++|+++.
T Consensus 74 ~~~~-~~~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 74 PHGV-SKEIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred CcHH-HHHHHH-HHHhhhcCCCEEEECCc
Confidence 9543 333322 23456799999999974
No 237
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.59 E-value=0.0077 Score=53.47 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=49.7
Q ss_pred cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH-HHHhccc
Q 016162 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREA 237 (394)
Q Consensus 159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~a 237 (394)
..-+|+|++|.|||.|.+|...++.| ...|++|+++++.......+ .+. ..+.. ..+ ++-+.++
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~~l~~-----------l~~--i~~~~-~~~~~~dl~~a 71 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICKEMKE-----------LPY--ITWKQ-KTFSNDDIKDA 71 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCHHHHh-----------ccC--cEEEe-cccChhcCCCc
Confidence 34589999999999999999999997 68999999998765433221 010 11111 111 2236789
Q ss_pred CEEEEcCC
Q 016162 238 DVISLHPV 245 (394)
Q Consensus 238 DiV~l~lP 245 (394)
|+|+.++.
T Consensus 72 ~lViaaT~ 79 (157)
T PRK06719 72 HLIYAATN 79 (157)
T ss_pred eEEEECCC
Confidence 99998876
No 238
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.58 E-value=0.0064 Score=59.51 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=33.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhH
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR 202 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~ 202 (394)
.|+.+||+|+|-+|.--.+. |+++|++|+++|+...++
T Consensus 181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kk 218 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKK 218 (360)
T ss_pred CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhH
Confidence 79999999999998776676 699999999999987543
No 239
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.57 E-value=0.013 Score=48.40 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhccc
Q 016162 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255 (394)
Q Consensus 176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~ 255 (394)
-+..+++.| +..|++|.+|||......... + +. ..++....++++.++.+|+|+++++ .++-..+--
T Consensus 18 p~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~---~-------~~-~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~ 84 (106)
T PF03720_consen 18 PALELIEEL-KERGAEVSVYDPYVDEEEIKE---L-------GK-LEGVEVCDDLEEALKGADAVVLATD-HDEFRELDW 84 (106)
T ss_dssp HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHH---H-------CH-HHCEEEESSHHHHHTTESEEEESS---GGGGCCGH
T ss_pred HHHHHHHHH-HHCCCEEEEECCccChHHHHh---h-------CC-ccceEEecCHHHHhcCCCEEEEEec-CHHHhccCH
Confidence 457788887 788999999999987643221 0 00 0012234689999999999999998 344444322
Q ss_pred HHHHhcCCCCcEEEEc
Q 016162 256 KERLATMKKEAILVNC 271 (394)
Q Consensus 256 ~~~l~~mk~gailIN~ 271 (394)
++....|+++.+|||+
T Consensus 85 ~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDG 100 (106)
T ss_dssp HHHHHHSCSSEEEEES
T ss_pred HHHHHhcCCCCEEEEC
Confidence 4455778899999997
No 240
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.52 E-value=0.012 Score=61.03 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=72.9
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
-+++++++|+|+|..|.++|+.| +..|++|.++|...........+ .+...| +.+.......+.+..+|+|+
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~~~~~~~~~~~~dlVV 82 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSN----ELKELG---VKLVLGENYLDKLDGFDVIF 82 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHH----HHHhCC---CEEEeCCCChHHhccCCEEE
Confidence 36688999999999999999997 79999999999865321110000 012222 11111122245568899998
Q ss_pred EcCCCChhhhh-----------cccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162 242 LHPVLDKTTYH-----------LINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (394)
Q Consensus 242 l~lPlt~~t~~-----------li~~-~~l-~~mk~gailIN~aRG~~vde~aL~~aL~~g~ 290 (394)
.. |.-+.+.. ++++ +.+ ...+...+-|--+.|+.--.+-|...|+...
T Consensus 83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 77 33222211 2222 122 2234345667778899988888888887533
No 241
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.52 E-value=0.012 Score=58.22 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=70.8
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
++.++|+|||.|.+|..+|..++ ..| ++|+.+|.+.........+.... ....+ .........+.+ .++.||+|+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~~~~-~~~~I~~~~d~~-~l~~aDiVI 79 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-NVIAG-SNSKVIGTNNYE-DIAGSDVVI 79 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-hhccC-CCeEEEECCCHH-HhCCCCEEE
Confidence 45579999999999999998863 445 48999998876432222221110 00011 111222235664 579999999
Q ss_pred EcCCC--Ch--------------hhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCcceEE
Q 016162 242 LHPVL--DK--------------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG 295 (394)
Q Consensus 242 l~lPl--t~--------------~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~--~g~l~gaa 295 (394)
++.-. .+ ++..++. .+.+....|.+++|+++...-+-...+.+.-. ..++.|.+
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 97621 11 1111221 12233345777999988533333444443321 23566665
No 242
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.45 E-value=0.037 Score=49.14 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=66.4
Q ss_pred CCCeEEEEe--cChHHHHHHHHHHhcCCcEEEEEcCchhh--HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 164 ~gktvGIIG--lG~IG~~vA~~la~~~G~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
.|+||++|| .+++..+++..+ ..||+++.+..|.... ......+...+.....| ..+....++++.++++|+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV 76 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence 488999999 389999999986 7999999999887622 21122110000011111 112234799999999999
Q ss_pred EEEcCCCC---hh--------hhhcccHHHHhcCCCCcEEEEcC
Q 016162 240 ISLHPVLD---KT--------TYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 240 V~l~lPlt---~~--------t~~li~~~~l~~mk~gailIN~a 272 (394)
|..-.-.+ .+ ....++++.++.+|++++|.-+.
T Consensus 77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 96554321 11 11457888888888888888874
No 243
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.44 E-value=0.024 Score=54.00 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=71.4
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEE--------cCchhh--HHHHHHHhhhhhhhhcCC-CCccccccCCH
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQFLKANGE-QPVTWKRASSM 230 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~--------d~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 230 (394)
+++|+++.|-|+|++|+.+|+.| ...|++|++. |+..-. .+.+..+..+..+..... .+.... ..+-
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 106 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAE-YIPN 106 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSE-EECH
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCccccccccccccee-Eecc
Confidence 69999999999999999999998 6889998876 554322 122222221110000000 000001 1123
Q ss_pred H-HHh-cccCEEEEcCCCChhhhhcccHHHHh-cCCCCcE-EEEcCCCcccCHHHHHHHHHcCCc
Q 016162 231 D-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEAI-LVNCSRGPVIDEVALVEHLKQNPM 291 (394)
Q Consensus 231 ~-ell-~~aDiV~l~lPlt~~t~~li~~~~l~-~mk~gai-lIN~aRG~~vde~aL~~aL~~g~l 291 (394)
+ +++ ..||+++-|-- .+.|+++... .+++++- ++-.+.+.+ ..++.. .|++..+
T Consensus 107 ~~~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI 164 (244)
T PF00208_consen 107 DDEILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGI 164 (244)
T ss_dssp HCHGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-
T ss_pred ccccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCC
Confidence 2 555 68999998843 5668888877 7765554 555666665 455554 6666554
No 244
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.42 E-value=0.016 Score=57.86 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=45.5
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEE-cCchhhHHHHHHHhhhhhhh-----hcC-CCCccccccCCHHHHhcccC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLK-----ANG-EQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~l~ell~~aD 238 (394)
.+|||+|+|+||+.+++.+...-++++.+. |+.+ ...+.....++-... ... ....+.....++++++..+|
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~-~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKP-DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCCh-HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 379999999999999998744457887765 4332 211111111100000 000 00011122346788888999
Q ss_pred EEEEcCCC
Q 016162 239 VISLHPVL 246 (394)
Q Consensus 239 iV~l~lPl 246 (394)
+|+.|.|.
T Consensus 81 VVIdaT~~ 88 (341)
T PRK04207 81 IVVDATPG 88 (341)
T ss_pred EEEECCCc
Confidence 99999884
No 245
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.42 E-value=0.0076 Score=56.12 Aligned_cols=96 Identities=19% Similarity=0.246 Sum_probs=67.7
Q ss_pred ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccc-ccCCHHHHhcccC
Q 016162 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREAD 238 (394)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 238 (394)
.-++.||+|.|||-|.+|..=++.+ ...|++|+++.+.....+....+ ..+ ..+. ..-+.++ +..++
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~-------~~~---i~~~~~~~~~~~-~~~~~ 74 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIE-------EGK---IKWIEREFDAED-LDDAF 74 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHH-------hcC---cchhhcccChhh-hcCce
Confidence 3579999999999999999999987 68999999999988544443222 111 1111 1123444 44499
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
+|+.+++.. -+|+..+..+++-.+++|+.
T Consensus 75 lviaAt~d~-----~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 75 LVIAATDDE-----ELNERIAKAARERRILVNVV 103 (210)
T ss_pred EEEEeCCCH-----HHHHHHHHHHHHhCCceecc
Confidence 999998732 26777777787777888874
No 246
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.34 E-value=0.023 Score=56.09 Aligned_cols=124 Identities=18% Similarity=0.222 Sum_probs=68.5
Q ss_pred CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-CCC-ccccccCCHHHHhcccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQP-VTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~ell~~aDiV~l 242 (394)
.+|+|||.|.+|..+|-.++. +..-++..||.+.........+ +.+.. ... .......+.++ ++.||+|++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D-----l~~~~~~~~~~~v~~~~dy~~-~~~adivvi 77 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD-----LQHGSAFLKNPKIEADKDYSV-TANSKVVIV 77 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH-----HHHhhccCCCCEEEECCCHHH-hCCCCEEEE
Confidence 489999999999999987632 4555899999876432222222 11111 001 12222346665 899999998
Q ss_pred cCC--CCh-hhh-hcc--c-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE
Q 016162 243 HPV--LDK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG 295 (394)
Q Consensus 243 ~lP--lt~-~t~-~li--~-------~~~l~~mk~gailIN~aRG~~vde~aL~~a--L~~g~l~gaa 295 (394)
+.- ..+ .++ .++ | .+.+....|.+++|+++..-=+-...+.+. +...++.|.+
T Consensus 78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecC
Confidence 643 222 233 111 1 123444578899999984222222233332 3344555553
No 247
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.33 E-value=0.015 Score=53.78 Aligned_cols=99 Identities=24% Similarity=0.259 Sum_probs=59.3
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh--HHH------------HHHHhhhhhhhhcCC-CCccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--RLE------------KFVTAYGQFLKANGE-QPVTW 224 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~--~~~------------~~~~~~~~~~~~~~~-~~~~~ 224 (394)
..|.+++|.|+|+|.+|..+|+.| ...|. +++.+|+..-. .+. ...+.....++.... .....
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~L-a~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 95 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYL-AGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA 95 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHH-HHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999998 47777 89999977310 000 000000011111110 00000
Q ss_pred --ccc--CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 225 --KRA--SSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 225 --~~~--~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
... .++++.++++|+|+.|+. +.+++.++++.....
T Consensus 96 ~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~ 135 (202)
T TIGR02356 96 LKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVAL 135 (202)
T ss_pred ehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 011 235677899999988875 567777777655443
No 248
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.33 E-value=0.035 Score=53.97 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=51.5
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+.|+++.|||.|.+|+.++..| ...|+ +|++++|+.++. +...+.+. ..... ..+....++.+.+.++|+|
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~~----~~~~~-~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLGV----QVGVI-TRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHhh----hcCcc-eeccchhhhhhcccCCCEE
Confidence 36789999999999999999987 57887 799999987643 22222211 00000 0000012334566889999
Q ss_pred EEcCCCC
Q 016162 241 SLHPVLD 247 (394)
Q Consensus 241 ~l~lPlt 247 (394)
+.|+|..
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9999953
No 249
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.32 E-value=0.034 Score=57.23 Aligned_cols=119 Identities=23% Similarity=0.274 Sum_probs=73.6
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
++.+|++.|+|.|.+|.++|+.| ...|++|+++|+..........+. +...+. ........++....+|+|+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~~---~~~~~~~~~~~~~~~d~vv 73 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELGI---ELVLGEYPEEFLEGVDLVV 73 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcCC---EEEeCCcchhHhhcCCEEE
Confidence 46799999999999999999998 689999999999753322221111 111121 1222223346678899998
Q ss_pred EcCCCChhhhhc----------cc-HHH-HhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162 242 LHPVLDKTTYHL----------IN-KER-LATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (394)
Q Consensus 242 l~lPlt~~t~~l----------i~-~~~-l~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (394)
.+.-..+....+ +. .+. ....+...+-|--+.|+..-.+-|...|+.
T Consensus 74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 875433332211 11 111 222233445566678999888888888875
No 250
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.29 E-value=0.087 Score=51.06 Aligned_cols=190 Identities=21% Similarity=0.187 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcC----Cc-------E
Q 016162 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N 191 (394)
Q Consensus 123 vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~----G~-------~ 191 (394)
+|--+++-+++.+|- .|..|.+.+|.|+|.|.-|-.+|+.+. .. |+ +
T Consensus 4 Ta~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~ 61 (279)
T cd05312 4 TAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKK 61 (279)
T ss_pred HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCe
Confidence 455677777777762 345788999999999999999999874 44 66 8
Q ss_pred EEEEcCchh-----hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEEcCCCChhhhhcccHHHHhcCC-
Q 016162 192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK- 263 (394)
Q Consensus 192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~lPlt~~t~~li~~~~l~~mk- 263 (394)
++.+|+..- ..+..+...|... ... ....+|.|+++ ..|+++=+- ..-++|.++.++.|.
T Consensus 62 i~~vD~~Gll~~~r~~l~~~~~~~a~~---~~~-----~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~ 129 (279)
T cd05312 62 IWLVDSKGLLTKDRKDLTPFKKPFARK---DEE-----KEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAK 129 (279)
T ss_pred EEEEcCCCeEeCCCCcchHHHHHHHhh---cCc-----ccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHh
Confidence 899987621 1122333344321 110 12358999999 889997653 124789999999998
Q ss_pred --CCcEEEEcCCCcc---cCHHHHHHHHHcCC-cceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcH-----HHHHH
Q 016162 264 --KEAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK-----WTREG 331 (394)
Q Consensus 264 --~gailIN~aRG~~---vde~aL~~aL~~g~-l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~-----~~~~~ 331 (394)
+..++.=.|+... +..++.+++ .+|+ |.+.+.-.-..+.--. ...-+..|+++-|-|+-... .--+.
T Consensus 130 ~~~~PIIFaLSNPt~~~E~~pe~a~~~-t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~ 208 (279)
T cd05312 130 SNERPIIFALSNPTSKAECTAEDAYKW-TDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDE 208 (279)
T ss_pred cCCCCEEEECCCcCCccccCHHHHHHh-hcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHH
Confidence 8999999998765 233333333 2355 4443321111111001 12235679999998875322 12256
Q ss_pred HHHHHHHHHHHHHcCC
Q 016162 332 MATLAALNVLGKIKGY 347 (394)
Q Consensus 332 ~~~~~~~ni~~~l~g~ 347 (394)
|...+++.+-++..-+
T Consensus 209 m~~aAA~aLA~~~~~~ 224 (279)
T cd05312 209 MFLAAAEALASLVTDE 224 (279)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 6667777777765444
No 251
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.27 E-value=0.011 Score=60.75 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=48.5
Q ss_pred CeEEEEecChHHHHHHH--HHH---hcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 166 QTVGVIGAGRIGSAYAR--MMV---EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~--~la---~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+|+|||.|.+|...+- -++ ..-|.+|..||++...... ........+.. ...........|+++.++.||+|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~-~~~~~~~~~~~-~~~~~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLET-VEILAKKIVEE-LGAPLKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHH-HHHHHHHHHHh-cCCCeEEEEeCCHHHHhcCCCEE
Confidence 37999999999998554 122 1236699999998754221 11111111111 11222333456889999999999
Q ss_pred EEcCC
Q 016162 241 SLHPV 245 (394)
Q Consensus 241 ~l~lP 245 (394)
+.++|
T Consensus 79 i~ai~ 83 (423)
T cd05297 79 INTIQ 83 (423)
T ss_pred EEeeE
Confidence 99998
No 252
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.0093 Score=56.07 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=50.9
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccc--cccCCHHHH-hcccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW--KRASSMDEV-LREADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el-l~~aDiV~l 242 (394)
+++.|+|+|..|..+|+.| ...|++|+..|++.....+...+.+. ...+.. ....-|+++ +.++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~-------~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELD-------THVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcc-------eEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 5799999999999999998 79999999999988764331111111 101100 011235555 788999999
Q ss_pred cCCCChh
Q 016162 243 HPVLDKT 249 (394)
Q Consensus 243 ~lPlt~~ 249 (394)
++..+..
T Consensus 73 ~t~~d~~ 79 (225)
T COG0569 73 ATGNDEV 79 (225)
T ss_pred eeCCCHH
Confidence 9885443
No 253
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.21 E-value=0.015 Score=65.60 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=48.1
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcE-------------EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (394)
+.|+|+|||.|.||+..|+.|++.-+.+ |.+.|++..... ...+.| .+...+.. .+.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~-~la~~~------~~~~~v~l-Dv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAK-ETVEGI------ENAEAVQL-DVSDS 639 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHH-HHHHhc------CCCceEEe-ecCCH
Confidence 4779999999999999999985443444 888999875432 222211 01111111 12344
Q ss_pred HH---HhcccCEEEEcCCC
Q 016162 231 DE---VLREADVISLHPVL 246 (394)
Q Consensus 231 ~e---ll~~aDiV~l~lPl 246 (394)
++ +++.+|+|++|+|.
T Consensus 640 e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHHhhcCCCEEEECCCc
Confidence 44 44789999999995
No 254
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.21 E-value=0.12 Score=52.29 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=96.8
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH-------HHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK-------FVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (394)
++|.|+|.|-+|-..+-.+ ..+|.+|+.+|....+...- +..+..+.+++... .-+.....+.++.++.+|
T Consensus 1 MkI~viGtGYVGLv~g~~l-A~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~-~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACL-AELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA-SGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccc-cCcEEEEcCHHHHHhcCC
Confidence 4799999999999999998 58999999999887652110 00011111221111 111223468888999999
Q ss_pred EEEEcCCCChhhhhccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec-cCCCCCCC-C-
Q 016162 239 VISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV-FEDEPYMK-P- 307 (394)
Q Consensus 239 iV~l~lPlt~~t~~li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV-~~~EP~~~-~- 307 (394)
++++|+|..+...+-+| ++..+.++..+++|+=|+-.+=-.+.+.+-+.+..-.. -.+| +.+|-+.+ +
T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~A 157 (414)
T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSA 157 (414)
T ss_pred EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcch
Confidence 99999984443233332 34556677779999999877666666666555443222 3343 44555543 1
Q ss_pred --ccccCCceEEcCCCCCCcHHHHHHH
Q 016162 308 --GLSEMKNAIVVPHIASASKWTREGM 332 (394)
Q Consensus 308 --~L~~~~nvilTPHia~~t~~~~~~~ 332 (394)
..+.-++++ +|..+..+.+.+
T Consensus 158 v~D~~~PdRIV----iG~~~~~a~~~~ 180 (414)
T COG1004 158 VYDFLYPDRIV----IGVRSERAAAVL 180 (414)
T ss_pred hhhccCCCeEE----EccCChhHHHHH
Confidence 233445666 566665533333
No 255
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.19 E-value=0.02 Score=56.07 Aligned_cols=124 Identities=13% Similarity=0.221 Sum_probs=63.8
Q ss_pred EEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC-
Q 016162 168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV- 245 (394)
Q Consensus 168 vGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP- 245 (394)
|+|||.|.+|..+|..++. +++ +|+.+|++.........+.. +.....+ .........+.+ .++.||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~-~~~~~~~-~~~~I~~t~d~~-~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDIS-QAAPILG-SDTKVTGTNDYE-DIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHH-HhhhhcC-CCeEEEEcCCHH-HhCCCCEEEEecCC
Confidence 6899999999999988742 334 99999998653211111111 1011111 111222234555 4899999998763
Q ss_pred -CChh---------hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH--HcCCcceEE
Q 016162 246 -LDKT---------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRVG 295 (394)
Q Consensus 246 -lt~~---------t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL--~~g~l~gaa 295 (394)
..+. +..++. .+.+....|.+++|+++...-+-...+.+.. ...++.|.+
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 2111 111111 1223334577788888743323333333321 122455655
No 256
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.18 E-value=0.031 Score=46.14 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=54.1
Q ss_pred EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCEEEEc
Q 016162 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISLH 243 (394)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV~l~ 243 (394)
+.|+|+|.+|+.+++.| +..+.+|++.|+.+..... ++..+. ........+.+.+ +.++|.|+++
T Consensus 1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~~~---------~~~~~~-~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERVEE---------LREEGV-EVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHHHH---------HHHTTS-EEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHHHH---------HHhccc-ccccccchhhhHHhhcCccccCEEEEc
Confidence 57999999999999998 5666799999998865322 122221 1111122333322 6889999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVN 270 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN 270 (394)
++.+..+. .-...+..+.+...++-
T Consensus 70 ~~~d~~n~--~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 70 TDDDEENL--LIALLARELNPDIRIIA 94 (116)
T ss_dssp SSSHHHHH--HHHHHHHHHTTTSEEEE
T ss_pred cCCHHHHH--HHHHHHHHHCCCCeEEE
Confidence 98443333 33444554445555553
No 257
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.18 E-value=0.021 Score=58.79 Aligned_cols=120 Identities=11% Similarity=0.104 Sum_probs=70.4
Q ss_pred ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch----------hhHHHHHHHhhhhhhhhcCCCCc----ccc
Q 016162 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPV----TWK 225 (394)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~----~~~ 225 (394)
|.+|.|+||.|.|+|++|+..|+.| ..+|++|++..... ...+. +..++-.... ...... +.
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~~~-~~v~~~~~~~ga- 298 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLYR-GRIREYAEKYGC- 298 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhhcC-CchhhhHhhcCC-
Confidence 3579999999999999999999998 79999999844311 01111 0011100000 000000 00
Q ss_pred ccCCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcC
Q 016162 226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 226 ~~~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~-ga-ilIN~aRG~~vde~aL~~aL~~g 289 (394)
...+.++++ ..||+++=|. +.+.|+++....++. |. +++-.|.| ++..++.....+.|
T Consensus 299 ~~i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg 359 (444)
T PRK14031 299 KYVEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK 359 (444)
T ss_pred EEcCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence 112334443 4689888664 477788888887764 44 56666676 66666665444443
No 258
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.18 E-value=0.023 Score=54.18 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=56.6
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
-++-|+|.|.+++.+++.+ +.+|++|+++|+++.... +..+..++.+....|
T Consensus 101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~~~~---------------------------~~~~~~~~~~~~~~~ 152 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREAEFP---------------------------EDLPDGVATLVTDEP 152 (246)
T ss_pred CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCccccc---------------------------ccCCCCceEEecCCH
Confidence 4899999999999999985 899999999998753100 001123333322222
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
.+.+..+.+...+|=+.++.-.|.+.|..+|.+.
T Consensus 153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~ 186 (246)
T TIGR02964 153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRG 186 (246)
T ss_pred ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCC
Confidence 1222234567777777788888888888888443
No 259
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.16 E-value=0.096 Score=50.06 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCc-----------E
Q 016162 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------N 191 (394)
Q Consensus 123 vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~-----------~ 191 (394)
+|--+++-+++.+|- .|+.|.+.++.|.|.|..|-.+|+.+ ...++ +
T Consensus 4 TaaV~lAgllnAlk~---------------------~g~~l~d~riv~~GAGsAg~gia~ll-~~~~~~~Gls~e~A~~~ 61 (254)
T cd00762 4 TASVAVAGLLAALKV---------------------TKKKISEHKVLFNGAGAAALGIANLI-VXLXVKEGISKEEACKR 61 (254)
T ss_pred hHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHH-HHHHHhcCCCHHHHhcc
Confidence 455677777777762 34578899999999999999999988 45444 6
Q ss_pred EEEEcCchhh-----HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEEcCCCChhhhhcccHHHHhcCC-
Q 016162 192 LIYYDLYQAT-----RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK- 263 (394)
Q Consensus 192 V~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~lPlt~~t~~li~~~~l~~mk- 263 (394)
++.+|+.--- .+..+...+..+.+.. ....+|.|+++ ..|+++=.. ...++|.++.++.|.
T Consensus 62 i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~-------~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~ 130 (254)
T cd00762 62 IWXVDRKGLLVKNRKETCPNEYHLARFANPE-------RESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAE 130 (254)
T ss_pred EEEECCCCeEeCCCCccCHHHHHHHHHcCcc-------cccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhh
Confidence 8888876210 0111112211111111 12358999999 999997542 224789999999998
Q ss_pred --CCcEEEEcCCCcc---cCHHHHHHHHHcCC-cceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHH-----HHHH
Q 016162 264 --KEAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKW-----TREG 331 (394)
Q Consensus 264 --~gailIN~aRG~~---vde~aL~~aL~~g~-l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~-----~~~~ 331 (394)
+..++.=.|+... +..++.+++= +|+ |.+-+.-.+.++-.-. ...-+..|+++-|-++-.... --+.
T Consensus 131 ~~~~PIIFaLSNPt~~aE~tpe~a~~~t-~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~ 209 (254)
T cd00762 131 INERPVIFALSNPTSKAECTAEEAYTAT-EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDD 209 (254)
T ss_pred cCCCCEEEECCCcCCccccCHHHHHhhc-CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHH
Confidence 9999999998665 3344444332 243 3333332222211000 123356799999988753321 1255
Q ss_pred HHHHHHHHHHHHHcC
Q 016162 332 MATLAALNVLGKIKG 346 (394)
Q Consensus 332 ~~~~~~~ni~~~l~g 346 (394)
|...+++.+-.+..-
T Consensus 210 m~~aAA~aLA~~v~~ 224 (254)
T cd00762 210 VFLSAAEAIASSVTE 224 (254)
T ss_pred HHHHHHHHHHhhCCh
Confidence 666666666665543
No 260
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.16 E-value=0.017 Score=57.76 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=60.3
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh--------------------HHHHHHHhhhhhhhhcCC
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------------RLEKFVTAYGQFLKANGE 219 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~--------------------~~~~~~~~~~~~~~~~~~ 219 (394)
..|++++|.|||.|.+|..+|+.|+ ..|. ++..+|+..-. +.+... ..+++.+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~----~~l~~inp 94 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAK----EHLRKINS 94 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHH----HHHHHHCC
Confidence 5699999999999999999999984 6776 78889986410 000000 11111111
Q ss_pred -CCcccc----ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162 220 -QPVTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (394)
Q Consensus 220 -~~~~~~----~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~ 260 (394)
..+... ...+++++++++|+|+.++ .+.+++.++++--..
T Consensus 95 ~v~i~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~ 139 (338)
T PRK12475 95 EVEIVPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK 139 (338)
T ss_pred CcEEEEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 111000 1134678899999999998 467888887765443
No 261
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.16 E-value=0.034 Score=57.28 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=73.6
Q ss_pred ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEE--------EcCchhh--H---HHHHHHhhhhhhhh--cCCCCccc
Q 016162 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQAT--R---LEKFVTAYGQFLKA--NGEQPVTW 224 (394)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~--------~d~~~~~--~---~~~~~~~~~~~~~~--~~~~~~~~ 224 (394)
|.++.|+||.|=|+|++|+..|+.| ...|++|++ ||+.--. . +.++.+..+..+.. .+..+ .
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~g--a 299 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPG--S 299 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCC--C
Confidence 3479999999999999999999998 789999999 8854321 1 11111111100000 00001 1
Q ss_pred cccCCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162 225 KRASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM 291 (394)
Q Consensus 225 ~~~~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk--~gailIN~aRG~~vde~aL~~aL~~g~l 291 (394)
. ..+.++++ ..||+.+-|. +.+.|+++....+. +-.+++-.|.| ++..+|- +.|.+..+
T Consensus 300 ~-~i~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI 361 (445)
T PRK14030 300 T-FFAGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ 361 (445)
T ss_pred E-EcCCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence 1 11233443 4589887664 57788887777662 34577788888 5666654 55665544
No 262
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.14 E-value=0.016 Score=57.22 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=59.4
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDi 239 (394)
.+++|+|||.|.+|..+|-.+ ...|. ++..+|.+.........+ . .+... ..... ...+. +.+++||+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~D-l----~~~~~~~~~~~i-~~~~~-~~~~~adi 76 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMD-L----SHAVPFTSPTKI-YAGDY-SDCKDADL 76 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHH-H----HhhccccCCeEE-EeCCH-HHhCCCCE
Confidence 467999999999999999887 45566 899999866542222222 1 11110 01111 12344 45899999
Q ss_pred EEEcCC--CChh-hh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q 016162 240 ISLHPV--LDKT-TY-HLI--N-------KERLATMKKEAILVNCSR 273 (394)
Q Consensus 240 V~l~lP--lt~~-t~-~li--~-------~~~l~~mk~gailIN~aR 273 (394)
|+++.- ..|. ++ .++ | .+.+....+.+++|+++.
T Consensus 77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 998743 2221 22 111 1 122333347889999873
No 263
>PRK11579 putative oxidoreductase; Provisional
Probab=96.00 E-value=0.056 Score=53.84 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=44.6
Q ss_pred CeEEEEecChHHHH-HHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEE
Q 016162 166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (394)
Q Consensus 166 ktvGIIGlG~IG~~-vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~ 241 (394)
.++||||+|.||+. .+..+.+.-++++. ++|++.....+ .| +. ...+.+++++++ +.|+|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~----~~-------~~----~~~~~~~~ell~~~~vD~V~ 69 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA----DW-------PT----VTVVSEPQHLFNDPNIDLIV 69 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh----hC-------CC----CceeCCHHHHhcCCCCCEEE
Confidence 48999999999985 45655333478876 57777543211 11 11 123579999996 579999
Q ss_pred EcCCCC
Q 016162 242 LHPVLD 247 (394)
Q Consensus 242 l~lPlt 247 (394)
+|+|..
T Consensus 70 I~tp~~ 75 (346)
T PRK11579 70 IPTPND 75 (346)
T ss_pred EcCCcH
Confidence 999943
No 264
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.96 E-value=0.014 Score=53.75 Aligned_cols=90 Identities=16% Similarity=0.282 Sum_probs=58.7
Q ss_pred eEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
+++|||- |.+|+.+++.+ +..|+.|+ +++||+|++|+|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilavP 40 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSVP 40 (197)
T ss_pred EEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeCC
Confidence 7999998 99999999998 78898773 247899999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC--C---ccccCCceEEcCC
Q 016162 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--P---GLSEMKNAIVVPH 320 (394)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~--~---~L~~~~nvilTPH 320 (394)
- ..+..++ ..+. .+++|++.-+- .+.++ ..++...+|+.- . .|+ .++++++.
T Consensus 41 v-~~~~~~i-----~~~~--~~v~Dv~SvK~----~i~~~---------~~~~vg~HPMfGp~~a~~~lf--~~~iv~~~ 97 (197)
T PRK06444 41 I-DAALNYI-----ESYD--NNFVEISSVKW----PFKKY---------SGKIVSIHPLFGPMSYNDGVH--RTVIFIND 97 (197)
T ss_pred H-HHHHHHH-----HHhC--CeEEeccccCH----HHHHh---------cCCEEecCCCCCCCcCccccc--ceEEEECC
Confidence 3 2333333 2232 37899976432 12221 225666778642 1 344 47777643
No 265
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.95 E-value=0.0091 Score=60.37 Aligned_cols=74 Identities=24% Similarity=0.278 Sum_probs=45.1
Q ss_pred EEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCEEEEcC
Q 016162 168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
|+|+|.|.+|+.+++.|++..+. +|++.||+..+... ..+.. ..... .........+++++++++|+|+.|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~-~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAER-LAEKL----LGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHH-HHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH-HHhhc----cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 68999999999999998655556 89999999875322 11100 00000 0001111234778999999999999
Q ss_pred CC
Q 016162 245 VL 246 (394)
Q Consensus 245 Pl 246 (394)
|.
T Consensus 76 gp 77 (386)
T PF03435_consen 76 GP 77 (386)
T ss_dssp SG
T ss_pred cc
Confidence 83
No 266
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.94 E-value=0.034 Score=46.74 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=63.4
Q ss_pred CeEEEEe----cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 166 ktvGIIG----lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
|++.||| -|..|..+.+.| +..|.+|+..++..... . +...+.+++|.-...|+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-----------------~--G~~~y~sl~e~p~~iDlav 60 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-----------------L--GIKCYPSLAEIPEPIDLAV 60 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-----------------T--TEE-BSSGGGCSST-SEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-----------------C--cEEeeccccCCCCCCCEEE
Confidence 6899999 789999999998 67999999999876321 1 1224568888448899999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV 294 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga 294 (394)
+++|. +.+..++. +. ..+..+.+++..+ ..++++.+.+++..+.-.
T Consensus 61 v~~~~-~~~~~~v~-~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 61 VCVPP-DKVPEIVD-EA-AALGVKAVWLQPG----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp E-S-H-HHHHHHHH-HH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-EEE
T ss_pred EEcCH-HHHHHHHH-HH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEE
Confidence 99992 23344442 22 2235677888876 566777777777665533
No 267
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.93 E-value=0.044 Score=56.08 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=63.0
Q ss_pred ccCCCeEEEEec----------ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH
Q 016162 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (394)
Q Consensus 162 ~l~gktvGIIGl----------G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (394)
.+.|++|+|+|+ ..-...+++.| ...|++|.+|||........ .+ ....+++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~~--------------~~~~~~~ 371 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---GL--------------PLIDDLE 371 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---hc--------------ccCCCHH
Confidence 479999999998 55778899998 68899999999986442110 00 1136888
Q ss_pred HHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (394)
Q Consensus 232 ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~ 271 (394)
+.++.||.|+++++ .++-+. ++-+.+..+.+..+++|+
T Consensus 372 ~~~~~ad~~v~~t~-~~~~~~-~~~~~~~~~~~~~~v~D~ 409 (411)
T TIGR03026 372 EALKGADALVILTD-HDEFKD-LDLEKIKDLMKGKVVVDT 409 (411)
T ss_pred HHHhCCCEEEEecC-CHHHhc-cCHHHHHHhcCCCEEEeC
Confidence 99999999999987 333332 454555443335578874
No 268
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.93 E-value=0.011 Score=51.21 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=69.6
Q ss_pred EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-CCCccccc-cCCHHHHhcccCEEEEcCC
Q 016162 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKR-ASSMDEVLREADVISLHPV 245 (394)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~l~ell~~aDiV~l~lP 245 (394)
|.|+|.|.||.-+|-+| +..|.+|..+++.. . .+.. ...+-.+.... ........ ..+..+.....|+|++|+.
T Consensus 1 I~I~G~GaiG~~~a~~L-~~~g~~V~l~~r~~-~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARL-AQAGHDVTLVSRSP-R-LEAI-KEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHH-HHTTCEEEEEESHH-H-HHHH-HHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHH-HHCCCceEEEEccc-c-HHhh-hheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 68999999999999998 46899999999977 2 1211 11110111111 00000001 1122346788999999997
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 016162 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 295 (394)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaa 295 (394)
. .++...+.. .-....+++.++-.-.| +-.++.|.+.+...++.++.
T Consensus 77 a-~~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 77 A-YQLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp G-GGHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred c-cchHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 3 344554433 44556677777766555 55566666666444554444
No 269
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.93 E-value=0.014 Score=50.87 Aligned_cols=107 Identities=21% Similarity=0.372 Sum_probs=60.5
Q ss_pred CeEEEEec-ChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
.+|+|||. |++|+.+|-.|.. +++-++..+|+..........+ ..+... .............+.+++||+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D-l~~~~~---~~~~~~~i~~~~~~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD-LSHASA---PLPSPVRITSGDYEALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-HHHHHH---GSTEEEEEEESSGGGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh-hhhhhh---hcccccccccccccccccccEEEEe
Confidence 37999999 9999999987643 5677999999986532222122 100000 0101111122456778999999998
Q ss_pred C--CCChh-hh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccC
Q 016162 244 P--VLDKT-TY-HLI--NK-------ERLATMKKEAILVNCSRGPVID 278 (394)
Q Consensus 244 l--Plt~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vd 278 (394)
. |..+. ++ .++ |. +.+....|.++++.++. ++|
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN--Pvd 122 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN--PVD 122 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS--SHH
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC--cHH
Confidence 7 43332 11 111 11 23333457788888844 455
No 270
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.011 Score=59.00 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=46.3
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
++||||||-|-.|+.++.. ++.+|.+|++.|+.+..-.....+ ............+.++...||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~---------~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVAD---------RVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhccc---------ceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999998 589999999999887542221100 0000000011247788999999964
No 271
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=95.88 E-value=0.16 Score=50.63 Aligned_cols=103 Identities=12% Similarity=0.150 Sum_probs=64.5
Q ss_pred ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHH---HhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV---TAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (394)
Q Consensus 162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (394)
.+.|+||+++|=+ ++..+.+..+ ..||++|.+..|..-...+... +.+ .+..| ..+....++++.+++
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~ 225 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKF---AKESG---ARITVTDDIDKAVKG 225 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHH---HHHcC---CeEEEEcCHHHHhCC
Confidence 4789999999986 5778888776 6899999999875422111111 111 11112 223345799999999
Q ss_pred cCEEEEcC----CCCh---hh------hhcccHHHHhcC-CCCcEEEEc
Q 016162 237 ADVISLHP----VLDK---TT------YHLINKERLATM-KKEAILVNC 271 (394)
Q Consensus 237 aDiV~l~l----Plt~---~t------~~li~~~~l~~m-k~gailIN~ 271 (394)
||+|..-. .... +. ...++++.++.+ |++++|.-+
T Consensus 226 aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~ 274 (334)
T PRK01713 226 VDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC 274 (334)
T ss_pred CCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence 99997632 1100 11 123677777775 688888766
No 272
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.85 E-value=0.037 Score=53.34 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=44.6
Q ss_pred CeEEEEe-cChHHHHHHHHHHhcCCcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
.+|+|+| +|+||+.+++.+...-++++.+ +|+.......+... ...+....+...+.+++++...+|+|+.+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~------~~~~~~~~gv~~~~d~~~l~~~~DvVIdf 75 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG------ELAGIGKVGVPVTDDLEAVETDPDVLIDF 75 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH------HhcCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence 3799999 7999999999875456887664 67432211000000 00011111222346888886678999999
Q ss_pred CC
Q 016162 244 PV 245 (394)
Q Consensus 244 lP 245 (394)
.|
T Consensus 76 T~ 77 (266)
T TIGR00036 76 TT 77 (266)
T ss_pred CC
Confidence 87
No 273
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=95.85 E-value=0.22 Score=49.08 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=50.8
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+.|.+|+++|= +++.++.+..+ ..+|++|....|..-.......+.+ ..+.| ..+....++++.++++|+|
T Consensus 149 ~l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvv 221 (304)
T PRK00779 149 SLKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVV 221 (304)
T ss_pred CcCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEE
Confidence 378999999997 78888888886 6899999999875432111221110 11112 1233457999999999999
Q ss_pred EEc
Q 016162 241 SLH 243 (394)
Q Consensus 241 ~l~ 243 (394)
..-
T Consensus 222 y~~ 224 (304)
T PRK00779 222 YTD 224 (304)
T ss_pred Eec
Confidence 764
No 274
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.79 E-value=0.022 Score=58.32 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=69.0
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
.++|.|||+|.+|.++|+.| +..|.+|.++|++....... .+ .+. .+ ....+....++|+|+.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~---~~---~~~------~~--~~~~~~~~~~~dlvV~s~ 67 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC---PY---IHE------RY--LENAEEFPEQVDLVVRSP 67 (418)
T ss_pred CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh---HH---Hhh------hh--cCCcHHHhcCCCEEEECC
Confidence 46899999999999999997 78999999999875431110 00 000 00 113344457899998887
Q ss_pred CCChhhh----------hcccHHHH--hc--C-CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 245 VLDKTTY----------HLINKERL--AT--M-KKEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 245 Plt~~t~----------~li~~~~l--~~--m-k~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
+..+... .++.+-.+ .. + +...+-|--+.|+.--.+-|...|+..
T Consensus 68 gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~ 127 (418)
T PRK00683 68 GIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL 127 (418)
T ss_pred CCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence 5443211 12333222 22 2 223566777889998888888888763
No 275
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.78 E-value=0.1 Score=50.96 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=49.0
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh--hHHHHHHHhhhhhhhhcCCCCccccccC---CHHHHhc
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEVLR 235 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ell~ 235 (394)
++.|+++.|+|.|..+++++-.+ ...|+ +|++++|+.. .+.+...+.+. ........+.... .+.+.+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l-~~~g~~~i~i~nRt~~~~~ka~~la~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 195 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQG-AIEGLKEIKLFNRRDEFFDKALAFAQRVN----ENTDCVVTVTDLADQQAFAEALA 195 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCccHHHHHHHHHHHhh----hccCceEEEechhhhhhhhhhcc
Confidence 57889999999999999999876 45676 8999999853 22222222211 0000001111111 1334566
Q ss_pred ccCEEEEcCCC
Q 016162 236 EADVISLHPVL 246 (394)
Q Consensus 236 ~aDiV~l~lPl 246 (394)
++|+|+.++|.
T Consensus 196 ~aDivINaTp~ 206 (288)
T PRK12749 196 SADILTNGTKV 206 (288)
T ss_pred cCCEEEECCCC
Confidence 89999999984
No 276
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.76 E-value=0.29 Score=49.31 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=47.6
Q ss_pred ccCCCeEEEEecC--------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHH---HhhhhhhhhcCCCCccccccCCH
Q 016162 162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV---TAYGQFLKANGEQPVTWKRASSM 230 (394)
Q Consensus 162 ~l~gktvGIIGlG--------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l 230 (394)
.++|+||+|+|.| ++.++.+..+ ..|||+|.+..|..-...+... +.+ +...| ..+....++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~---~~~~g---~~~~~~~d~ 239 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKN---AAENG---GKFNIVNSM 239 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHH---HHHcC---CeEEEEcCH
Confidence 4789999999854 3446677765 5899999999886321111111 111 11112 122345799
Q ss_pred HHHhcccCEEEEc
Q 016162 231 DEVLREADVISLH 243 (394)
Q Consensus 231 ~ell~~aDiV~l~ 243 (394)
++.++.+|+|..-
T Consensus 240 ~ea~~~aDvvyt~ 252 (357)
T TIGR03316 240 DEAFKDADIVYPK 252 (357)
T ss_pred HHHhCCCCEEEEC
Confidence 9999999999765
No 277
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.74 E-value=0.077 Score=54.58 Aligned_cols=119 Identities=20% Similarity=0.183 Sum_probs=71.8
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc-cCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV 240 (394)
++.||++.|+|.|.+|.++|+.| ...|++|++.|+......+. .+ .+...|. .........+++.. .|+|
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g~---~~~~~~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEGI---KVICGSHPLELLDEDFDLM 72 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcCC---EEEeCCCCHHHhcCcCCEE
Confidence 36789999999999999999998 68999999999764321111 00 1122221 11111123344554 8988
Q ss_pred EEcC--CCC-hhh-------hhcccHHHH-hcC-CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 241 SLHP--VLD-KTT-------YHLINKERL-ATM-KKEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 241 ~l~l--Plt-~~t-------~~li~~~~l-~~m-k~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
+... |.+ |.- ..++.+-.| ..+ +...+-|--+.|+.--..-|...|+..
T Consensus 73 V~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 73 VKNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 8764 322 211 123333323 233 444566777889998888888888753
No 278
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.72 E-value=0.089 Score=54.31 Aligned_cols=123 Identities=19% Similarity=0.158 Sum_probs=67.7
Q ss_pred ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCc-------h--hhHH---HHHHHhhhhhhhhcCCCCccccc
Q 016162 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY-------Q--ATRL---EKFVTAYGQFLKANGEQPVTWKR 226 (394)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~-------~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
+.+++|+||.|=|+|++|+..|+.| ..+|++|+ +-|.+ - ...+ .+.+......+........+..
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~- 309 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAK- 309 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcE-
Confidence 3579999999999999999999997 78999999 44444 0 1111 1111000000000000000011
Q ss_pred cCCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcC-CCCc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 016162 227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEA-ILVNCSRGPVIDEVALVEHLKQNPM 291 (394)
Q Consensus 227 ~~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~m-k~ga-ilIN~aRG~~vde~aL~~aL~~g~l 291 (394)
+.+.++++ -.||+.+-|. +.+.|+.+....+ +.++ +++-.|.+.+-. +|. +.|++..+
T Consensus 310 ~~~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~-~~L~~~GI 370 (454)
T PTZ00079 310 YVPGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-EAT-HLFKKNGV 370 (454)
T ss_pred EeCCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-HHH-HHHHHCCc
Confidence 11222332 4689888774 5777888776654 3344 455666666544 443 45665544
No 279
>PRK12862 malic enzyme; Reviewed
Probab=95.69 E-value=0.21 Score=55.10 Aligned_cols=186 Identities=17% Similarity=0.200 Sum_probs=118.7
Q ss_pred CCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhc
Q 016162 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (394)
Q Consensus 108 ~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~ 187 (394)
.+|++.|+-- .-+|=.+++-+++.+|- .|+.+.+.+|.|.|.|.-|-.+|+.| ..
T Consensus 160 ~~ip~f~DD~---~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~ 214 (763)
T PRK12862 160 MKIPVFHDDQ---HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VS 214 (763)
T ss_pred CCCceEecCc---ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HH
Confidence 4689999744 34577778888877762 34678999999999999999999998 56
Q ss_pred CCc---EEEEEcCchh------hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH
Q 016162 188 FKM---NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (394)
Q Consensus 188 ~G~---~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~ 258 (394)
.|. +++.+|+..- ..+..+...|. +. ....+|+|+++.+|+++=+- +.++|.++.
T Consensus 215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a---~~--------~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~ 278 (763)
T PRK12862 215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARYA---QK--------TDARTLAEVIEGADVFLGLS-----AAGVLKPEM 278 (763)
T ss_pred cCCCcccEEEEcCCCeeeCCCCccccHHHHHHh---hh--------cccCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence 788 7999995421 00112222232 11 01258999999999987542 147899999
Q ss_pred HhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcH-----HHHHHH
Q 016162 259 LATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK-----WTREGM 332 (394)
Q Consensus 259 l~~mk~gailIN~aRG~~v-de~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~-----~~~~~~ 332 (394)
++.|.+..++.=.|....- ..+..+++ ..|.+.+-+- ...| -+..|+++-|-|+-... .--+.|
T Consensus 279 v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGr---s~~p------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m 348 (763)
T PRK12862 279 VKKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATGR---SDYP------NQVNNVLCFPYIFRGALDVGATTINEEM 348 (763)
T ss_pred HHHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEECC---cCCC------CcccceeeccchhhhHHhcCCeeCCHHH
Confidence 9999999999999987652 22333322 2233433331 1112 23568999998764221 112445
Q ss_pred HHHHHHHHHHHH
Q 016162 333 ATLAALNVLGKI 344 (394)
Q Consensus 333 ~~~~~~ni~~~l 344 (394)
...+++.+-.+.
T Consensus 349 ~~aaa~ala~~~ 360 (763)
T PRK12862 349 KIAAVRAIAELA 360 (763)
T ss_pred HHHHHHHHHhcc
Confidence 555555555544
No 280
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.67 E-value=0.23 Score=54.55 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=110.3
Q ss_pred hCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (394)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~ 186 (394)
+.+|+|.|+-- .-+|=-+++-+++.+|- .|+.+.+.++.|.|.|.-|-.+|+.| .
T Consensus 151 ~~~ip~f~DD~---~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~ 205 (752)
T PRK07232 151 RMDIPVFHDDQ---HGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-V 205 (752)
T ss_pred hcCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-H
Confidence 34689988743 34577778888877762 34678999999999999999999998 5
Q ss_pred cCCc---EEEEEcCchhh---H---HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHH
Q 016162 187 GFKM---NLIYYDLYQAT---R---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (394)
Q Consensus 187 ~~G~---~V~~~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~ 257 (394)
..|. +++.+|+..-- + ...+...|. +. ....+|+|+++.+|+++=.- +.++|.++
T Consensus 206 ~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a---~~--------~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~ 269 (752)
T PRK07232 206 ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYA---VD--------TDARTLAEAIEGADVFLGLS-----AAGVLTPE 269 (752)
T ss_pred HcCCCcccEEEEcCCCeecCCCcccccHHHHHHh---cc--------CCCCCHHHHHcCCCEEEEcC-----CCCCCCHH
Confidence 6788 78998865310 0 112222231 11 12358999999999887542 14789999
Q ss_pred HHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCC
Q 016162 258 RLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323 (394)
Q Consensus 258 ~l~~mk~gailIN~aRG~~v-de~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~ 323 (394)
.+..|.+..++.=.|....- ..+..+++ ..|.+.+-+ -...| -+..|+++-|-++-
T Consensus 270 ~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atG---rs~~p------nQ~NN~~~FPgi~~ 326 (752)
T PRK07232 270 MVKSMADNPIIFALANPDPEITPEEAKAV-RPDAIIATG---RSDYP------NQVNNVLCFPYIFR 326 (752)
T ss_pred HHHHhccCCEEEecCCCCccCCHHHHHHh-cCCEEEEEC---CcCCC------CcccceeecchhhH
Confidence 99999999999999987752 22322222 223343333 11122 24568999997764
No 281
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.64 E-value=0.035 Score=57.73 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=60.0
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
-+|+|++|.|||-|.++..=++.| ..+|++|+++.|...+...... ..+. +.+..-.--++-+..+++|
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~--------~~~~--i~~~~~~~~~~dl~~~~lv 76 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWA--------DAGM--LTLVEGPFDESLLDTCWLA 76 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHH--------hCCC--EEEEeCCCChHHhCCCEEE
Confidence 579999999999999999877777 5899999999987655443221 1121 1121111123457889999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~ 271 (394)
+.++.... +|......++...+++|+
T Consensus 77 ~~at~d~~-----~n~~i~~~a~~~~~lvN~ 102 (457)
T PRK10637 77 IAATDDDA-----VNQRVSEAAEARRIFCNV 102 (457)
T ss_pred EECCCCHH-----HhHHHHHHHHHcCcEEEE
Confidence 99886433 344444444444445554
No 282
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.63 E-value=0.039 Score=51.82 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=61.3
Q ss_pred cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhccc
Q 016162 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREA 237 (394)
Q Consensus 159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~a 237 (394)
.--+++|++|.|||-|.++..=++.| ..+|++|+++.|...+....... .+. +.+.. ..+. +-+..+
T Consensus 19 i~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~--i~~~~r~~~~-~dl~g~ 86 (223)
T PRK05562 19 ISLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGN--LKLIKGNYDK-EFIKDK 86 (223)
T ss_pred eEEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCCh-HHhCCC
Confidence 33567899999999999999877776 58999999999987665433211 111 11111 1133 336789
Q ss_pred CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (394)
Q Consensus 238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~ 271 (394)
++|+.++. +++ +|+.....++.-.+++|+
T Consensus 87 ~LViaATd-D~~----vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 87 HLIVIATD-DEK----LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred cEEEECCC-CHH----HHHHHHHHHHHcCCeEEE
Confidence 99999976 333 455555555554455554
No 283
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.62 E-value=0.14 Score=52.58 Aligned_cols=75 Identities=15% Similarity=0.253 Sum_probs=50.6
Q ss_pred ccCCCeEEEEecC---hHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162 162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (394)
Q Consensus 162 ~l~gktvGIIGlG---~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (394)
.+.|+||+++|=+ ++..+.+..+ ..+ ||+|.+..|..-...+.+.+. +...| ..+....++++.++.|
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRNG---HVIEQTDDLAAGLRGA 309 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhcC---CeEEEEcCHHHHhCCC
Confidence 4889999999984 8899988876 455 999999887543212222111 11112 2233457999999999
Q ss_pred CEEEEcC
Q 016162 238 DVISLHP 244 (394)
Q Consensus 238 DiV~l~l 244 (394)
|+|....
T Consensus 310 DVVYt~~ 316 (429)
T PRK11891 310 DVVYATR 316 (429)
T ss_pred CEEEEcC
Confidence 9998743
No 284
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.61 E-value=0.042 Score=54.05 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=46.2
Q ss_pred CeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV~ 241 (394)
++|+|||.|.+|..+|..+ ...| .+|..+|++.........+ +.+... ..... ...+. +.++.||+|+
T Consensus 1 mkI~IIGaG~VG~~~a~~l-~~~g~~~ev~l~D~~~~~~~g~a~d-----l~~~~~~~~~~~i-~~~d~-~~l~~aDiVi 72 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYAL-LLRGLASEIVLVDINKAKAEGEAMD-----LAHGTPFVKPVRI-YAGDY-ADCKGADVVV 72 (308)
T ss_pred CEEEEECCCHHHHHHHHHH-HHcCCCCEEEEEECCchhhhhHHHH-----HHccccccCCeEE-eeCCH-HHhCCCCEEE
Confidence 3799999999999999987 4556 5899999976532211111 111100 00111 12355 4589999999
Q ss_pred EcCCC
Q 016162 242 LHPVL 246 (394)
Q Consensus 242 l~lPl 246 (394)
++.+.
T Consensus 73 ita~~ 77 (308)
T cd05292 73 ITAGA 77 (308)
T ss_pred EccCC
Confidence 99885
No 285
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.60 E-value=0.076 Score=52.11 Aligned_cols=126 Identities=13% Similarity=0.080 Sum_probs=72.5
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
++|+|+|.|.||+-+|-+| ...|.+|..++|..+. .+...++=+-.+...+.. ..+.....-.+.....|+|++|+-
T Consensus 3 m~I~IiGaGaiG~~~a~~L-~~~G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRL-ARAGLPVRLILRDRQR-LAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHH-HhCCCCeEEEEechHH-HHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence 4799999999999999998 5679999999996532 222111000001111110 000000111123467899999985
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (394)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD 297 (394)
.. ++...+ +.....+.+++.++-+-. ++-.++.+.+.+-+.++.++..-
T Consensus 80 ~~-~~~~al-~~l~~~l~~~t~vv~lQN-Gv~~~e~l~~~~~~~~v~~g~~~ 128 (305)
T PRK05708 80 AY-DAEPAV-ASLAHRLAPGAELLLLQN-GLGSQDAVAARVPHARCIFASST 128 (305)
T ss_pred HH-hHHHHH-HHHHhhCCCCCEEEEEeC-CCCCHHHHHHhCCCCcEEEEEee
Confidence 32 333333 344556778888777655 44566777777766666555443
No 286
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.54 E-value=0.32 Score=47.86 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=49.3
Q ss_pred cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
+.|.||+++|= +++-++.+..+ ..||++|....|......+...+..-......| ..+....++++.+++||+|.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy 221 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIY 221 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence 78999999997 67888888876 689999999887543211111110000001111 12334579999999999997
Q ss_pred Ec
Q 016162 242 LH 243 (394)
Q Consensus 242 l~ 243 (394)
.-
T Consensus 222 ~~ 223 (304)
T TIGR00658 222 TD 223 (304)
T ss_pred Ec
Confidence 63
No 287
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.50 E-value=0.096 Score=54.70 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=71.2
Q ss_pred ccCCCeEEEEec----------ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhh----hhhhcC------CCC
Q 016162 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP 221 (394)
Q Consensus 162 ~l~gktvGIIGl----------G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~ 221 (394)
.+.|++|+|+|+ ..-...+++.| ...|.+|.+|||........ ..|+. +-.... ...
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV 397 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence 589999999998 56788899998 68999999999985431110 01100 000000 000
Q ss_pred ccccccCCHHHHhcccCEEEEcCCCChhhhhcccHH-HHhcCCCCcEEEEcCCCcccCHHHHH
Q 016162 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV 283 (394)
Q Consensus 222 ~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~-~l~~mk~gailIN~aRG~~vde~aL~ 283 (394)
.......++++.++.||+|+++++ .++-+. ++-+ ....|++..+++|. | .++|.+.+-
T Consensus 398 ~~~~~~~~~~~a~~~aD~vvi~t~-~~ef~~-l~~~~~~~~m~~~~~viD~-r-n~l~~~~~~ 456 (473)
T PLN02353 398 KQVSVVWDAYEATKGAHGICILTE-WDEFKT-LDYQKIYDNMQKPAFVFDG-R-NVLDHEKLR 456 (473)
T ss_pred cceeeeCCHHHHhcCCCEEEECCC-ChHhcc-cCHHHHHHhccCCCEEEEC-C-CCCCHHHHH
Confidence 011223567789999999999987 334343 3433 35667766689995 4 355765553
No 288
>PRK12861 malic enzyme; Reviewed
Probab=95.48 E-value=0.29 Score=53.83 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=117.3
Q ss_pred CceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcC
Q 016162 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (394)
Q Consensus 109 gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~ 188 (394)
.|++.|+-- .-+|=-+++-+++.+|- .|+.+.+.+|.|.|.|.-|-.+|+.+ ...
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~ 211 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL 211 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence 688988743 34566778888877762 34678999999999999999999998 677
Q ss_pred Cc---EEEEEcCchh-----hH-HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHH
Q 016162 189 KM---NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (394)
Q Consensus 189 G~---~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l 259 (394)
|. +++.+|+..- .. ...+...|.. . ....+|.|+++.+|+++=+- +.++|.++.+
T Consensus 212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~---~--------~~~~~L~eai~~advliG~S-----~~g~ft~e~v 275 (764)
T PRK12861 212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQ---E--------TDARTLAEVIGGADVFLGLS-----AGGVLKAEML 275 (764)
T ss_pred CCChhhEEEEcCCCeeeCCCcccCCHHHHHHHh---h--------cCCCCHHHHHhcCCEEEEcC-----CCCCCCHHHH
Confidence 88 7899984321 00 1122223321 1 11258999999999886542 2578999999
Q ss_pred hcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcH-----HHHHHHH
Q 016162 260 ATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK-----WTREGMA 333 (394)
Q Consensus 260 ~~mk~gailIN~aRG~~v-de~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~-----~~~~~~~ 333 (394)
+.|.+..++.=.|....- ..+..+ + ..|+...|. --...| -+..|+++-|-|+-... .--+.|.
T Consensus 276 ~~Ma~~PIIFaLsNPtpE~~pe~a~-~-~~g~aivaT--Grs~~p------nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~ 345 (764)
T PRK12861 276 KAMAARPLILALANPTPEIFPELAH-A-TRDDVVIAT--GRSDYP------NQVNNVLCFPYIFRGALDVGATTITREME 345 (764)
T ss_pred HHhccCCEEEECCCCCccCCHHHHH-h-cCCCEEEEe--CCcCCC------CccceeeecchhhHHHHHcCCccCCHHHH
Confidence 999999999999986641 222222 2 224422221 111112 24579999998764221 1224455
Q ss_pred HHHHHHHHHHHc
Q 016162 334 TLAALNVLGKIK 345 (394)
Q Consensus 334 ~~~~~ni~~~l~ 345 (394)
..+++.|-.+..
T Consensus 346 ~aAa~alA~~~~ 357 (764)
T PRK12861 346 IAAVHAIAGLAE 357 (764)
T ss_pred HHHHHHHHhhCC
Confidence 555555555443
No 289
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.41 E-value=0.21 Score=50.75 Aligned_cols=190 Identities=19% Similarity=0.142 Sum_probs=117.1
Q ss_pred hCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (394)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~ 186 (394)
+..|+|.|+--. -+|=.+++-+++.+| ..|+.|+..+|.+.|.|.-|-.+++.+ .
T Consensus 165 ~~~IPvFhDDqq---GTaiv~lA~llnalk---------------------~~gk~l~d~kiv~~GAGAAgiaia~~l-~ 219 (432)
T COG0281 165 RMNIPVFHDDQQ---GTAIVTLAALLNALK---------------------LTGKKLKDQKIVINGAGAAGIAIADLL-V 219 (432)
T ss_pred cCCCCccccccc---HHHHHHHHHHHHHHH---------------------HhCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence 356777776543 457777888887776 245789999999999999999999998 7
Q ss_pred cCCc---EEEEEcCchhh---H----HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162 187 GFKM---NLIYYDLYQAT---R----LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (394)
Q Consensus 187 ~~G~---~V~~~d~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~ 256 (394)
+.|+ +|+.+|+..-- + ..++...|. .+ . ...... ++.+..+|+++-+-- .+.|.+
T Consensus 220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a---~~--~----~~~~~~-~~~~~~adv~iG~S~-----~G~~t~ 284 (432)
T COG0281 220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKA---IE--D----TGERTL-DLALAGADVLIGVSG-----VGAFTE 284 (432)
T ss_pred HhCCCcccEEEEecCCcccCCCcccccchHHHHHH---Hh--h----hccccc-cccccCCCEEEEcCC-----CCCcCH
Confidence 8888 69999876321 1 011111110 00 0 001111 457889999987632 389999
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHH-HHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHH-----HH
Q 016162 257 ERLATMKKEAILVNCSRGPVIDEVALVEH-LKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT-----RE 330 (394)
Q Consensus 257 ~~l~~mk~gailIN~aRG~~vde~aL~~a-L~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~-----~~ 330 (394)
+.++.|.+..++.=.|.... +..-+. .+-+. ++++=.+. -|. .|- +-.|+++-|.|+-.-..+ -+
T Consensus 285 e~V~~Ma~~PiIfalaNP~p---Ei~Pe~a~~~~~--~aaivaTG-rsd--~Pn-QvNNvL~FPgIfrGaLd~rA~~Itd 355 (432)
T COG0281 285 EMVKEMAKHPIIFALANPTP---EITPEDAKEWGD--GAAIVATG-RSD--YPN-QVNNVLIFPGIFRGALDVRAKTITD 355 (432)
T ss_pred HHHHHhccCCEEeecCCCCc---cCCHHHHhhcCC--CCEEEEeC-CCC--Ccc-cccceeEcchhhhhhHhhccccCCH
Confidence 99999999999998887653 222222 22221 22222221 221 121 668999999987533222 24
Q ss_pred HHHHHHHHHHHHHHc
Q 016162 331 GMATLAALNVLGKIK 345 (394)
Q Consensus 331 ~~~~~~~~ni~~~l~ 345 (394)
.|...+++.|-++.+
T Consensus 356 eM~~AAa~AiA~~~~ 370 (432)
T COG0281 356 EMKIAAAEAIADLAR 370 (432)
T ss_pred HHHHHHHHHHHhhcc
Confidence 555556666666544
No 290
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.40 E-value=0.098 Score=51.36 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----ccC
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD 238 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD 238 (394)
..++||||.|+||+..+..+.+.-++++. ++|+++.....++.+. .|. . ..+.++++++. +.|
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~-------~Gi---~-~~~~~ie~LL~~~~~~dID 72 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARR-------LGV---A-TSAEGIDGLLAMPEFDDID 72 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHH-------cCC---C-cccCCHHHHHhCcCCCCCC
Confidence 35899999999999977666444466655 5677654322121111 121 1 12357888885 588
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
+|+.++|....- +-.....+.|..+|+-+
T Consensus 73 iVf~AT~a~~H~-----e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 73 IVFDATSAGAHV-----RHAAKLREAGIRAIDLT 101 (302)
T ss_pred EEEECCCHHHHH-----HHHHHHHHcCCeEEECC
Confidence 899999832221 11122245677777765
No 291
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.40 E-value=0.045 Score=52.44 Aligned_cols=105 Identities=23% Similarity=0.207 Sum_probs=63.6
Q ss_pred cccccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (394)
Q Consensus 159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (394)
.|.+++..|++|+|+ |.||..+||.| .+-++.....-|....+-.+... | +.+ . .+.....|++..+.+.
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~l-a~~~~~~~ll~r~aea~~rq~l~-~---l~e--~--~~~~~i~s~d~~~~~e 231 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWL-APKVGVKELLLRDAEARNRQRLT-L---LQE--E--LGRGKIMSLDYALPQE 231 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHh-ccccCEEEEecccHHhhhhhhhh-h---ccc--c--cCCCeeeecccccccc
Confidence 568999999999997 99999999998 47666655554443332111111 1 111 1 1112234666555555
Q ss_pred CEEE-E-cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016162 238 DVIS-L-HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279 (394)
Q Consensus 238 DiV~-l-~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde 279 (394)
|+++ + .+| +-..|+... +|||++++|-++..=+|+
T Consensus 232 ~i~v~vAs~~----~g~~I~pq~---lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 232 DILVWVASMP----KGVEIFPQH---LKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred ceEEEEeecC----CCceechhh---ccCCeEEEcCCcCccccc
Confidence 6554 3 333 233455544 589999999988775554
No 292
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.39 E-value=0.033 Score=48.29 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=49.6
Q ss_pred EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCC
Q 016162 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (394)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt 247 (394)
+-|+|.|.+|+++++.+ +.+|++|+++|++++. ++.++-+. +.+.
T Consensus 1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~- 45 (136)
T PF13478_consen 1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP- 45 (136)
T ss_dssp EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence 46899999999999985 8999999999987421 12333322 2220
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016162 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (394)
Q Consensus 248 ~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaal 296 (394)
.+.. +.+ .+.+++++| ++++.-.|.+.|..+|++ ...+.|+
T Consensus 46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 1111 111 355666666 788888888888888876 3555543
No 293
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.39 E-value=0.17 Score=50.52 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=50.7
Q ss_pred ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
.+.|.+|+++|-+ ++..+.+..+ ..||+++.+..|..-....++.+..-...+..| ..+....++++.++++|+
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDv 228 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADF 228 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4889999999976 6889988886 689999999987543211111110000011112 123345789999999999
Q ss_pred EEEc
Q 016162 240 ISLH 243 (394)
Q Consensus 240 V~l~ 243 (394)
|..-
T Consensus 229 vytd 232 (336)
T PRK03515 229 IYTD 232 (336)
T ss_pred EEec
Confidence 9764
No 294
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.38 E-value=0.064 Score=50.38 Aligned_cols=107 Identities=24% Similarity=0.192 Sum_probs=63.5
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HH------------HHHHhhhhhhhhcCC-CCccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE------------KFVTAYGQFLKANGE-QPVTW 224 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~------------~~~~~~~~~~~~~~~-~~~~~ 224 (394)
..|.+++|.|+|+|.+|..+|+.|+ ..|. +++.+|+..-.. +- ...+.....+.+.+. ..+..
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999984 6677 788887543210 00 000000011111111 11111
Q ss_pred c--c--cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 225 K--R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 225 ~--~--~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
. . ..++++++.++|+|+.|+. +++++.++++.... .+.-+|.++
T Consensus 96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 0 1 1235678899999999986 67778777765543 345566664
No 295
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.35 E-value=0.054 Score=53.20 Aligned_cols=102 Identities=19% Similarity=0.286 Sum_probs=59.2
Q ss_pred CeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
++|+|||.|.+|+.+|..| ...| -++..+|++....... ...+.+.....+ ..... ...+.+ .+..||+|+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l-~~~g~~~ei~l~D~~~~~~~~~-a~dL~~~~~~~~-~~~~i-~~~~~~-~l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSL-VNQGIADELVLIDINEEKAEGE-ALDLEDALAFLP-SPVKI-KAGDYS-DCKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCcchhhHh-HhhHHHHhhccC-CCeEE-EcCCHH-HhCCCCEEEEc
Confidence 4899999999999999987 4566 4899999977543221 111111000001 01111 123444 47899999998
Q ss_pred CCCChh---hh--------hccc--HHHHhcCCCCcEEEEcC
Q 016162 244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCS 272 (394)
Q Consensus 244 lPlt~~---t~--------~li~--~~~l~~mk~gailIN~a 272 (394)
...... ++ .++. .+.+....|.+++|+++
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 764211 11 1111 12344456788999987
No 296
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.33 E-value=0.16 Score=50.75 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=48.8
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH---HHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (394)
.+.|++|+++|= .++..+.+..+ ..+|++|....|..-.-.... .+++. ...| ..+....++++.++.+
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~---~~~g---~~~~~~~d~~eav~~a 223 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENC---EVSG---GSVLVTDDVDEAVKDA 223 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHH---HhcC---CeEEEEcCHHHHhCCC
Confidence 588999999997 57777777775 689999999987632111111 11110 0111 1233457999999999
Q ss_pred CEEEE
Q 016162 238 DVISL 242 (394)
Q Consensus 238 DiV~l 242 (394)
|+|..
T Consensus 224 Dvvy~ 228 (338)
T PRK02255 224 DFVYT 228 (338)
T ss_pred CEEEE
Confidence 99987
No 297
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.32 E-value=0.17 Score=49.60 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=68.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
.|++++|||--.=-..++++| ...|++|+.+.-.... | .. .+.....+.+++++++|+|++-
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~--------~-------~~--~g~~~~~~~~~~~~~ad~ii~~ 62 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLD--------H-------GF--TGATKSSSLEEALSDVDVIILP 62 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeccccc--------c-------cc--CCceeeccHHHHhccCCEEEEC
Confidence 378999999888888899998 6889998875422111 1 01 1122334678889999999999
Q ss_pred CCCChhhh---h-------cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 016162 244 PVLDKTTY---H-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (394)
Q Consensus 244 lPlt~~t~---~-------li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~g 293 (394)
+|.+.+.. . -++++.+++|++|..++ ++.+.. . +-+.+++.++..
T Consensus 63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~---~-~~~~~~~~gi~~ 117 (296)
T PRK08306 63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANP---Y-LKELAKETNRKL 117 (296)
T ss_pred CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCH---H-HHHHHHHCCCeE
Confidence 88654321 1 13578899999998444 343322 2 334455555544
No 298
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.29 E-value=0.081 Score=56.71 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=44.2
Q ss_pred CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCc-ccccccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEc
Q 016162 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL-FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYD 196 (394)
Q Consensus 119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~-~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d 196 (394)
.....||.++-|=|-++| |.-.. .....|++.+|.|+|.|.+|..+|+.| .+.|. +++.+|
T Consensus 307 dP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlVD 369 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFVD 369 (664)
T ss_pred CHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEEc
Confidence 345567777666665554 43211 122568999999999999999999998 57787 677777
Q ss_pred C
Q 016162 197 L 197 (394)
Q Consensus 197 ~ 197 (394)
.
T Consensus 370 ~ 370 (664)
T TIGR01381 370 N 370 (664)
T ss_pred C
Confidence 4
No 299
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.28 E-value=0.14 Score=50.40 Aligned_cols=73 Identities=23% Similarity=0.369 Sum_probs=51.2
Q ss_pred ccCCCeEEEEecC---hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162 162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 162 ~l~gktvGIIGlG---~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (394)
.+.|+||+++|-| ++.++.+..+ ..||++|.+..|......+++.+ .++..| ..+....++++.++.||
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~----~~~~~G---~~v~~~~d~~~a~~~aD 218 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILE----ELKAKG---IKVRETESLEEVIDEAD 218 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHH----HHHHcC---CEEEEECCHHHHhCCCC
Confidence 4789999999995 9999999986 68999999998764321122111 111212 22334579999999999
Q ss_pred EEEE
Q 016162 239 VISL 242 (394)
Q Consensus 239 iV~l 242 (394)
+|..
T Consensus 219 vvyt 222 (301)
T TIGR00670 219 VLYV 222 (301)
T ss_pred EEEE
Confidence 9976
No 300
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.27 E-value=0.13 Score=53.89 Aligned_cols=114 Identities=19% Similarity=0.187 Sum_probs=70.5
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
+.|+++.|+|+|.+|.+.++.| +..|++|+++|..... .+. ++..|. .........+.+..+|+|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~--------l~~~g~---~~~~~~~~~~~l~~~D~VV~ 76 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRP--------HAERGV---ATVSTSDAVQQIADYALVVT 76 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHH--------HHhCCC---EEEcCcchHhHhhcCCEEEE
Confidence 4789999999999999999986 7999999999976432 221 111121 11111223455778999887
Q ss_pred cCCCChhhh----------hcccHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 243 HPVLDKTTY----------HLINKERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 243 ~lPlt~~t~----------~li~~~~l~-~m--------k~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
...-.+... .++++-.|. .. +...+-|--+.|+.--..-|...|+..
T Consensus 77 SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~ 142 (488)
T PRK03369 77 SPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA 142 (488)
T ss_pred CCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 743222211 123332221 11 113455777789998888888888763
No 301
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=95.26 E-value=0.32 Score=48.50 Aligned_cols=106 Identities=11% Similarity=0.109 Sum_probs=62.9
Q ss_pred ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
.+.|.+|+++|-+ ++..+.+..+ ..+|++|.+..|..-...+.+.+..-+.....| ..+....++++.++.+|+
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv 228 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADF 228 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4789999999976 7888888876 689999998887542111111111000011112 123335789999999999
Q ss_pred EEEcC----CC-Ch---h-----hhhcccHHHHhcC-CCCcEEEEc
Q 016162 240 ISLHP----VL-DK---T-----TYHLINKERLATM-KKEAILVNC 271 (394)
Q Consensus 240 V~l~l----Pl-t~---~-----t~~li~~~~l~~m-k~gailIN~ 271 (394)
|..-. .. .+ + -..-++.+.++.. |+++++.-|
T Consensus 229 vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc 274 (334)
T PRK12562 229 IYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC 274 (334)
T ss_pred EEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence 97643 10 00 0 0123566666664 566666665
No 302
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.23 E-value=0.071 Score=53.39 Aligned_cols=97 Identities=16% Similarity=0.250 Sum_probs=55.1
Q ss_pred CeEEEEec-ChHHHHHHHHHHhcC-CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
.+|+|+|. |.+|+++++.| ... +.++. .+++..... ....+.|. ++. +.....+. ..+.++++.++|+|++
T Consensus 1 ~kVaIiGATG~vG~ellr~L-~~hP~~el~~l~~s~~sag-k~~~~~~~-~l~--~~~~~~~~-~~~~~~~~~~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLL-LNHPEVEITYLVSSRESAG-KPVSEVHP-HLR--GLVDLNLE-PIDEEEIAEDADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHH-HcCCCceEEEEeccchhcC-CChHHhCc-ccc--ccCCceee-cCCHHHhhcCCCEEEE
Confidence 47999998 99999999998 565 67777 446543210 00001110 000 10011111 1255676678999999
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
|+|.. ....+. ... .+.|..+||.|-
T Consensus 75 alP~~-~s~~~~-~~~---~~~G~~VIDlS~ 100 (346)
T TIGR01850 75 ALPHG-VSAELA-PEL---LAAGVKVIDLSA 100 (346)
T ss_pred CCCch-HHHHHH-HHH---HhCCCEEEeCCh
Confidence 99943 222222 111 256899999984
No 303
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.20 E-value=0.19 Score=48.90 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=59.8
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
.+..|+++.|+|.|-.+++++..| ...|+ +|++++|+.++. ++..+.+. +.+. ........+++. +.++|+
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~ra-~~La~~~~----~~~~-~~~~~~~~~~~~-~~~~dl 193 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRERA-EELADLFG----ELGA-AVEAAALADLEG-LEEADL 193 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhh----hccc-cccccccccccc-ccccCE
Confidence 356799999999999999999997 67885 799999988652 22222221 1111 000111122222 226999
Q ss_pred EEEcCCCChhhhh---cccHHHHhcCCCCcEEEEcCC
Q 016162 240 ISLHPVLDKTTYH---LINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 240 V~l~lPlt~~t~~---li~~~~l~~mk~gailIN~aR 273 (394)
|+.++|..-.... +++ ...++++.++.|+--
T Consensus 194 iINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY 227 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVY 227 (283)
T ss_pred EEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEecc
Confidence 9999995432210 122 334455555555543
No 304
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.15 E-value=0.086 Score=51.70 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=57.7
Q ss_pred EEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCC--CccccccCCHHHHhcccCEEEEc
Q 016162 168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
|+|||.|.+|..+|-.++ ..| .++..+|+..........+ +.+.... ........+ .+.++.||+|+++
T Consensus 1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~D-----L~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALD-----LSHASAFLATGTIVRGGD-YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHh-----HHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence 589999999999998873 445 5899999976543222111 1111110 111111234 4579999999998
Q ss_pred CCCC--hh-hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016162 244 PVLD--KT-TY--------HLIN--KERLATMKKEAILVNCSR 273 (394)
Q Consensus 244 lPlt--~~-t~--------~li~--~~~l~~mk~gailIN~aR 273 (394)
.... +. ++ .++. .+.+....|.+++|+++.
T Consensus 74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 7531 11 11 1111 123344458899999873
No 305
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.13 E-value=0.1 Score=48.57 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=57.0
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HH-----------HHHHhhhhhhhhcCCCCcccc-
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-----------KFVTAYGQFLKANGEQPVTWK- 225 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~- 225 (394)
..|+.++|.|||.|.+|..+|+.|+ ..|. ++..+|...-.. +. ...+.....+++.+. .....
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp-~v~v~~ 101 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINP-FVEIEA 101 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCC-CCEEEE
Confidence 4689999999999999999999985 5566 588888762100 00 000000011111111 01110
Q ss_pred ---c--cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 226 ---R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 226 ---~--~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
. ..+++++++.+|+|+.|+- +.+++..++......
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~D-~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAFD-NAETKAMLVETVLEH 141 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHHh
Confidence 0 1234577889999998864 566777776544443
No 306
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.12 E-value=0.13 Score=51.46 Aligned_cols=118 Identities=20% Similarity=0.245 Sum_probs=64.8
Q ss_pred eEEEEecChHHHHHHHHHHh---------cCCcEEE-EEcCchh---------hHHHHHHHhhhhhhhhcCCCCc--ccc
Q 016162 167 TVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQA---------TRLEKFVTAYGQFLKANGEQPV--TWK 225 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~---------~~G~~V~-~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~~~ 225 (394)
+|||+|+|.||+.+++.+.+ +.+.+|. +.|+... .....+.. ..+.... ...
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~-------~~~~~~~~~~~~ 76 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKE-------ETGKLADYPEGG 76 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHh-------ccCCcccCcccc
Confidence 79999999999999998732 2256765 4454211 11111111 1111000 001
Q ss_pred ccCCHHHHh--cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016162 226 RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM 291 (394)
Q Consensus 226 ~~~~l~ell--~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l 291 (394)
...++++++ ...|+|+.|+|....+...--+-....++.|.-+|-..-+.+ ..-++|.++.++..+
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 124788888 468999999996544322111222455667777766543332 245677777766544
No 307
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.11 E-value=0.13 Score=52.97 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=58.7
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH----Hhccc
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREA 237 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~a 237 (394)
.+..+++.|+|+|.+|+.+++.| ...|.+|+++|.++... +...+.+ .+. ........+.+. -+.++
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~------~~~-~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL------PNT-LVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC------CCC-eEEECCCCCHHHHHhcCCccC
Confidence 34568899999999999999998 78899999999887542 2111110 011 010111123322 25789
Q ss_pred CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (394)
Q Consensus 238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~ 271 (394)
|.|+++++.+.. +++-......+.+..+++-+
T Consensus 299 ~~vi~~~~~~~~--n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 299 DAFIALTNDDEA--NILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CEEEECCCCcHH--HHHHHHHHHHhCCCeEEEEE
Confidence 999998885433 23323333445555455443
No 308
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.11 E-value=0.11 Score=53.27 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=48.8
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc-c-ccccCCHHHH-hcccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~aDiV~l 242 (394)
+++.|+|+|.+|+.+|+.| ...|.+|+++|+++....+ ..+ ..+.... + ......++++ +.++|.|++
T Consensus 1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~~~-~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERLRR-LQD-------RLDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHHHH-HHh-------hcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 4799999999999999998 6889999999998764221 111 0110000 0 0111235555 788999999
Q ss_pred cCCCCh
Q 016162 243 HPVLDK 248 (394)
Q Consensus 243 ~lPlt~ 248 (394)
+++...
T Consensus 72 ~~~~~~ 77 (453)
T PRK09496 72 VTDSDE 77 (453)
T ss_pred ecCChH
Confidence 998543
No 309
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.11 E-value=0.11 Score=53.78 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=79.9
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhH-HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
..+++|.|+|+|.-|.++|+.| ...|++|+++|..+... .+... +...+. ....-.-..+.+..+|+|+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~------~~~~~i---~~~~g~~~~~~~~~~d~vV 74 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP------LLLEGI---EVELGSHDDEDLAEFDLVV 74 (448)
T ss_pred ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh------hhccCc---eeecCccchhccccCCEEE
Confidence 4499999999999999999998 78999999999665441 11100 000111 0111011126688899999
Q ss_pred Ec--CCCChh-h-------hhcccH-HHHhcC--CCCcEEEEcCCCcccCHHHHHHHHHc--------CCcceEEeeccC
Q 016162 242 LH--PVLDKT-T-------YHLINK-ERLATM--KKEAILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFE 300 (394)
Q Consensus 242 l~--lPlt~~-t-------~~li~~-~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~--------g~l~gaalDV~~ 300 (394)
.. +|.+.. . ..++++ +.|-+. +...+-|.-+.|+.--+.-+...|++ |.|...++|+..
T Consensus 75 ~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~ 154 (448)
T COG0771 75 KSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLE 154 (448)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhc
Confidence 87 332222 0 112332 233332 22355577778998888777777765 446777888887
Q ss_pred CCC
Q 016162 301 DEP 303 (394)
Q Consensus 301 ~EP 303 (394)
+++
T Consensus 155 ~~~ 157 (448)
T COG0771 155 QAE 157 (448)
T ss_pred ccC
Confidence 643
No 310
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.08 E-value=0.23 Score=49.73 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=66.9
Q ss_pred CeEEEEecChHHHHHHHHHHhcC-CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
.+|||||. .+|+.-++.++..- +.++. ++|+..+. .+++.+.| |. ..+.++++++.+.|+++++
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~-------gi-----~~y~~~eell~d~Di~~V~ 69 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRL-------GV-----PLYCEVEELPDDIDIACVV 69 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHh-------CC-----CccCCHHHHhcCCCEEEEE
Confidence 58999999 68998888773322 46665 57877654 33333333 21 1357999999999999999
Q ss_pred CCCC-hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162 244 PVLD-KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV 294 (394)
Q Consensus 244 lPlt-~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga 294 (394)
+|.+ |...|. +-..+.++.|.-++.=-=-..-+.++|+++.++..+...
T Consensus 70 ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 70 VRSAIVGGQGS--ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred eCCCCCCccHH--HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 9842 222221 222333444433322111113566778887777655544
No 311
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.05 E-value=0.42 Score=47.66 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=50.5
Q ss_pred ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
.+.|+||+++|-+ ++.++.+..+ ..||++|....|......+.+.+..-...+..| ..+....++++.++.||+
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv 227 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADV 227 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 3789999999997 7888888876 689999999887543221221111000011112 123335789999999999
Q ss_pred EEEc
Q 016162 240 ISLH 243 (394)
Q Consensus 240 V~l~ 243 (394)
|..-
T Consensus 228 vyt~ 231 (331)
T PRK02102 228 IYTD 231 (331)
T ss_pred EEEc
Confidence 9764
No 312
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.02 E-value=0.19 Score=48.91 Aligned_cols=80 Identities=23% Similarity=0.256 Sum_probs=49.8
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
++.|+++.|+|.|-.|++++-.| ...|+ +|+++||+.++. ++..+.+. ...+..........++++.+..+|+|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~ka-~~La~~~~---~~~~~~~~~~~~~~~~~~~~~~~div 198 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVIN---NAVGREAVVGVDARGIEDVIAAADGV 198 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHh---hccCcceEEecCHhHHHHHHhhcCEE
Confidence 45689999999999999999887 46787 799999987543 22222110 00010000000111234456789999
Q ss_pred EEcCCC
Q 016162 241 SLHPVL 246 (394)
Q Consensus 241 ~l~lPl 246 (394)
+.++|.
T Consensus 199 INaTp~ 204 (283)
T PRK14027 199 VNATPM 204 (283)
T ss_pred EEcCCC
Confidence 999983
No 313
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.01 E-value=0.18 Score=49.82 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=58.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc---ccCE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADV 239 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDi 239 (394)
.|++|.|+|.|.+|...++.+ +..|+ +|++.+++..+. + . +++.|..........++.++.. ..|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~-~-~-------a~~lGa~~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRSL-S-L-------AREMGADKLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHHH-H-H-------HHHcCCcEEecCCcccHHHHhccCCCCCE
Confidence 588999999999999999884 89999 688888876542 2 1 1122321111111123444332 2688
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
|+-+... +.+ + ...++.++++..++.++.
T Consensus 239 vid~~G~-~~~---~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 239 SFEVSGH-PSS---I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEECCCC-HHH---H-HHHHHHhhcCCEEEEEcc
Confidence 8777652 221 1 345667788888888764
No 314
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.01 E-value=0.12 Score=52.45 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=72.7
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh----------HHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (394)
.+|+|+||.|=|+|++|+..|+.+ ...|++|+++|.+... .+....+..+......+ .. ..+-
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~g-----a~-~i~~ 275 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAG-----AE-YITN 275 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcC-----ce-Eccc
Confidence 359999999999999999999997 6779999999876540 00000000000000001 11 1223
Q ss_pred HHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 231 ~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
++++ ..||+.+=| .+.+.|+.+...+++-. +++-.+.|++- .+|--..++.|
T Consensus 276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erG 328 (411)
T COG0334 276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERG 328 (411)
T ss_pred cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCC
Confidence 4554 468988755 45778988888888766 88888888875 34433344545
No 315
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.00 E-value=0.081 Score=52.56 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=53.6
Q ss_pred eEEEEecChHHHHHHHHHHhcC----CcEEEEEcCchhhHHHHHHHhhhhhh-------hhcC------CCCccccccCC
Q 016162 167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFL-------KANG------EQPVTWKRASS 229 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~~~~~~ 229 (394)
+|||.|+|+||+.+.|.+ ... +.+|...+.....+...+.-.|++.- +..+ ...+.+....+
T Consensus 1 ~IaInGfGrIGR~vlr~l-~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRAL-YESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHH-HhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 589999999999999986 443 36777665433333333444443210 0000 01111222224
Q ss_pred HHHH-h--cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 230 MDEV-L--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 230 l~el-l--~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
++++ + ...|+|+.|.+.... . +.....++.|+..|.++
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s-~----e~a~~~l~aGa~~V~~S 120 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGN-R----EQGERHIRAGAKRVLFS 120 (325)
T ss_pred hhhccccccCCCEEEEccchhcc-H----HHHHHHHHcCCeEEEec
Confidence 5543 2 478999998873221 1 22233456677777666
No 316
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.94 E-value=0.074 Score=53.15 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=59.6
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh-------------HHH---HHHHhhhhhhhhcCC-CCc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-------------RLE---KFVTAYGQFLKANGE-QPV 222 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~-------------~~~---~~~~~~~~~~~~~~~-~~~ 222 (394)
..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|...-. ... ...+.-...+++.+. ..+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 4689999999999999999999984 6677 89999976310 000 000000011111111 001
Q ss_pred ccc----ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162 223 TWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (394)
Q Consensus 223 ~~~----~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~ 260 (394)
... ...++.++++++|+|+.|+- +.+++.++++.-..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~ 139 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK 139 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 000 11245678899999998875 67788888765554
No 317
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.91 E-value=0.098 Score=55.43 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=35.1
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.++.+|++.|+|.|.+|++++..| ...|++|++++|+.+.
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~ 414 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER 414 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence 357899999999999999999998 5789999999998654
No 318
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.91 E-value=0.14 Score=51.85 Aligned_cols=89 Identities=22% Similarity=0.320 Sum_probs=61.1
Q ss_pred cCCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH
Q 016162 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (394)
Q Consensus 163 l~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 232 (394)
|.||||||+|+- .--..++++| +..|++|.+|||-....... .+ . ......++++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~---~~-------~----~~~~~~~~~~ 372 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR---NF-------P----DVELESDAEE 372 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh---cC-------C----CceEeCCHHH
Confidence 899999999984 4567788887 79999999999976542111 00 0 1234578999
Q ss_pred HhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270 (394)
Q Consensus 233 ll~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN 270 (394)
.++.||+++++.. .++-+.+ +-+.+ .|| +.++++
T Consensus 373 ~~~~aDaivi~te-w~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 373 ALKGADAIVINTE-WDEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHhhCCEEEEecc-HHHHhcc-Chhhh-hcc-CCEEEe
Confidence 9999999999975 3444433 33333 565 556665
No 319
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.88 E-value=0.14 Score=50.02 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=44.4
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l 242 (394)
.++||||.|+||+..+..+...-++++. ++|+++.....++.+ +.|. . ..+.+.+++++ +.|+|++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~-------~~Gi---~-~~~~~~e~ll~~~dIDaV~i 70 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAR-------ELGV---K-TSAEGVDGLLANPDIDIVFD 70 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHH-------HCCC---C-EEECCHHHHhcCCCCCEEEE
Confidence 3799999999999887665444466665 467665432111111 1121 1 12357888885 5788999
Q ss_pred cCCCC
Q 016162 243 HPVLD 247 (394)
Q Consensus 243 ~lPlt 247 (394)
++|..
T Consensus 71 aTp~~ 75 (285)
T TIGR03215 71 ATSAK 75 (285)
T ss_pred CCCcH
Confidence 99943
No 320
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.86 E-value=0.17 Score=48.39 Aligned_cols=186 Identities=18% Similarity=0.126 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcC----Cc-------E
Q 016162 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N 191 (394)
Q Consensus 123 vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~----G~-------~ 191 (394)
+|--+++-+++.+|- .|+.|++.++.|+|.|.-|-.+|+.+ ... |. +
T Consensus 4 TaaV~lAgll~Al~~---------------------~g~~l~d~riv~~GAGsAg~gia~ll-~~~~~~~G~~~~eA~~~ 61 (255)
T PF03949_consen 4 TAAVVLAGLLNALRV---------------------TGKKLSDQRIVFFGAGSAGIGIARLL-VAAMVREGLSEEEARKR 61 (255)
T ss_dssp HHHHHHHHHHHHHHH---------------------HTS-GGG-EEEEEB-SHHHHHHHHHH-HHHHHCTTS-HHHHHTT
T ss_pred hHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEeCCChhHHHHHHHH-HHHHHHhcCCHHHHhcc
Confidence 556677777777762 34579999999999999999999987 444 66 5
Q ss_pred EEEEcCchh-----hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc--CEEEEcCCCChhhhhcccHHHHhcCCC
Q 016162 192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMKK 264 (394)
Q Consensus 192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~lPlt~~t~~li~~~~l~~mk~ 264 (394)
++.+|+..- ..+..+...|.. .... .....+|.|+++.+ |+++=+- ...++|.++.++.|.+
T Consensus 62 i~lvD~~Gll~~~r~~l~~~~~~~a~---~~~~----~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~ 130 (255)
T PF03949_consen 62 IWLVDSKGLLTDDREDLNPHKKPFAR---KTNP----EKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAK 130 (255)
T ss_dssp EEEEETTEEEBTTTSSHSHHHHHHHB---SSST----TT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHH
T ss_pred EEEEeccceEeccCccCChhhhhhhc---cCcc----cccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhc
Confidence 888886521 112223334421 1111 11125999999999 9998663 1467899999999987
Q ss_pred ---CcEEEEcCCCcc---cCHHHHHHHHHcCCcceEEeeccCCCCCC-C---CccccCCceEEcCCCCCCcHH-----HH
Q 016162 265 ---EAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVVPHIASASKW-----TR 329 (394)
Q Consensus 265 ---gailIN~aRG~~---vde~aL~~aL~~g~l~gaalDV~~~EP~~-~---~~L~~~~nvilTPHia~~t~~-----~~ 329 (394)
..++.=.|+... +..++.+++ .+|+...|.= ..-.|.. + ...-+..|+++-|-++-.... -.
T Consensus 131 ~~erPIIF~LSNPt~~aE~~peda~~~-t~g~ai~AtG--Spf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~It 207 (255)
T PF03949_consen 131 HNERPIIFPLSNPTPKAECTPEDAYEW-TDGRAIFATG--SPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRIT 207 (255)
T ss_dssp HSSSEEEEE-SSSCGGSSS-HHHHHHT-TTSEEEEEES--S----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--
T ss_pred cCCCCEEEECCCCCCcccCCHHHHHhh-CCceEEEecC--CccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecC
Confidence 999999998766 333333332 2233222211 1111110 0 112345688888866542221 12
Q ss_pred HHHHHHHHHHHHHHH
Q 016162 330 EGMATLAALNVLGKI 344 (394)
Q Consensus 330 ~~~~~~~~~ni~~~l 344 (394)
+.|...+++.+-++.
T Consensus 208 d~M~~aAA~aLA~~v 222 (255)
T PF03949_consen 208 DEMFLAAAEALADLV 222 (255)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 566666666665544
No 321
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.84 E-value=0.11 Score=49.42 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=62.4
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HHH------------HHHhhhhhhhhcCC-CCccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGE-QPVTW 224 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~-~~~~~ 224 (394)
..|++++|+|||+|.+|..+++.|+ ..|. ++..+|...-.. +.. +.+.....+.+.+. ..+..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 5799999999999999999999985 5565 777887553210 000 00000111111111 00000
Q ss_pred -c-cc--CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 225 -K-RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 225 -~-~~--~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
. .. .+++++++++|+|+.|+- +.+++..+++.-... +.-+|..+
T Consensus 107 ~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~---~ip~v~~~ 154 (245)
T PRK05690 107 INARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAA---KKPLVSGA 154 (245)
T ss_pred EeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHh---CCEEEEee
Confidence 0 11 134567899999999885 677788777665543 33456543
No 322
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.81 E-value=0.15 Score=43.99 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=27.0
Q ss_pred eEEEEecChHHHHHHHHHHhcCCc-EEEEEcCc
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~ 198 (394)
+|.|+|+|.+|.++++.| ...|. ++..+|+.
T Consensus 1 ~VliiG~GglGs~ia~~L-~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNL-ARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHH-HHCCCCEEEEEcCC
Confidence 589999999999999998 46677 78999876
No 323
>PLN02527 aspartate carbamoyltransferase
Probab=94.79 E-value=0.23 Score=48.96 Aligned_cols=74 Identities=22% Similarity=0.414 Sum_probs=49.0
Q ss_pred ccCCCeEEEEecC---hHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162 162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (394)
Q Consensus 162 ~l~gktvGIIGlG---~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (394)
++.|.||+++|-+ ++..+.+..+ ..+ |++|....|..-....++.+ .++..| ..+....++++.++.|
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKD----YLTSKG---VEWEESSDLMEVASKC 219 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHH----HHHHcC---CEEEEEcCHHHHhCCC
Confidence 3789999999965 6888888876 456 99999888754211111111 112112 2233457899999999
Q ss_pred CEEEEc
Q 016162 238 DVISLH 243 (394)
Q Consensus 238 DiV~l~ 243 (394)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999774
No 324
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.78 E-value=0.077 Score=54.46 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=51.8
Q ss_pred ccccCCCeEEEEec----------ChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccC
Q 016162 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (394)
Q Consensus 160 g~~l~gktvGIIGl----------G~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (394)
+.++.|++|+|+|+ ..-...+++.| ...| ++|.+|||........ + .. .....
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~----~-------~~----~~~~~ 378 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK----L-------DG----LVTLV 378 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh----c-------cC----ceeeC
Confidence 45789999999998 55778899998 6775 9999999985431100 0 00 01236
Q ss_pred CHHHHhcccCEEEEcCC
Q 016162 229 SMDEVLREADVISLHPV 245 (394)
Q Consensus 229 ~l~ell~~aDiV~l~lP 245 (394)
++++.++.||.|+++++
T Consensus 379 ~~~~~~~~ad~vvi~t~ 395 (415)
T PRK11064 379 SLDEALATADVLVMLVD 395 (415)
T ss_pred CHHHHHhCCCEEEECCC
Confidence 88999999999999987
No 325
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=94.78 E-value=0.019 Score=55.92 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=70.0
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH--HHhhhhhhhhcCCCCccccc----------cC
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VTAYGQFLKANGEQPVTWKR----------AS 228 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~ 228 (394)
-...+.++.++|+|-+|-..+.. +...|+-|..+|-.+....+.. ...+.+.-+..+. -++.. ..
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~--gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESA--GGYAKEMSEEFIAKQAE 236 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhhhhhcccccccccccccC--CCccccCCHHHHHHHHH
Confidence 35677889999999999998877 4788999999987765422110 0000000001110 01111 11
Q ss_pred CHHHHhcccCEEEEc--CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 229 SMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 229 ~l~ell~~aDiV~l~--lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
-+.+.+++.|+|+.. +|..|. -.|+.++..+.||||+++||.+
T Consensus 237 ~~a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 237 LVAEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 234667889999654 676554 5678899999999999999975
No 326
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.78 E-value=0.1 Score=55.59 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=57.7
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH---HH-hcccCEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EV-LREADVIS 241 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---el-l~~aDiV~ 241 (394)
.++-|+|+|++|+.+|+.| +..|.+|++.|.+++..... ++.+.. .......+.+ +. ++++|.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~~~~---------~~~g~~-~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRVDEL---------RERGIR-AVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHHHHH---------HHCCCe-EEEcCCCCHHHHHhcCccccCEEE
Confidence 5689999999999999998 78899999999987643221 111211 1111223332 22 57899999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVN 270 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN 270 (394)
++++.+.++..++-. ...+.+...+|-
T Consensus 487 v~~~~~~~~~~iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 487 LTIPNGYEAGEIVAS--AREKRPDIEIIA 513 (558)
T ss_pred EEcCChHHHHHHHHH--HHHHCCCCeEEE
Confidence 999876665544432 222345555553
No 327
>PLN02342 ornithine carbamoyltransferase
Probab=94.76 E-value=0.74 Score=46.21 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=60.5
Q ss_pred ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+.|+||+++|=+ ++-.+.+..+ ..||++|....|..-...+...+ .++..+. ..+....++++.++.||+|
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~----~a~~~g~--~~~~~~~d~~eav~~aDVv 263 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVE----KARAAGI--SKIEITNDPAEAVKGADVV 263 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHH----HHHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence 4789999999863 4666666665 58999999988754321111111 1111121 1223457899999999999
Q ss_pred EEcC----CCChh--------hhhcccHHHHhcCCCCcEEEEc
Q 016162 241 SLHP----VLDKT--------TYHLINKERLATMKKEAILVNC 271 (394)
Q Consensus 241 ~l~l----Plt~~--------t~~li~~~~l~~mk~gailIN~ 271 (394)
..-. -..++ ....++++.++.+|++++|.-+
T Consensus 264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 8652 11111 0133555666666666655554
No 328
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.73 E-value=0.1 Score=42.09 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=44.4
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL 242 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l 242 (394)
.++.|+|+|+.|++++.......|+. +.++|..+...-. ..+ +..-+.+++++.+. .|+-++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-----------~i~----gipV~~~~~~l~~~~~i~iaii 68 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-----------EIG----GIPVYGSMDELEEFIEIDIAII 68 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-----------EET----TEEEESSHHHHHHHCTTSEEEE
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-----------EEC----CEEeeccHHHhhhhhCCCEEEE
Confidence 47999999999999885443444543 4566766543100 011 12223477777766 999999
Q ss_pred cCCCChhhhhcc
Q 016162 243 HPVLDKTTYHLI 254 (394)
Q Consensus 243 ~lPlt~~t~~li 254 (394)
++|. +..+..+
T Consensus 69 ~VP~-~~a~~~~ 79 (96)
T PF02629_consen 69 TVPA-EAAQEVA 79 (96)
T ss_dssp ES-H-HHHHHHH
T ss_pred EcCH-HHHHHHH
Confidence 9993 3444444
No 329
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.73 E-value=0.35 Score=44.92 Aligned_cols=98 Identities=20% Similarity=0.167 Sum_probs=60.0
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH-----hccc
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-----LREA 237 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~a 237 (394)
..|.++.|.|.|.+|+.+++.+ +..|.+|++.++..... + +... .+..........+..+. -...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~-~-~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKL-E-LAKE-------LGADHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHH-H-HHHH-------hCCceeccCCcCCHHHHHHHhcCCCC
Confidence 3578999999999999999985 89999999999876432 1 1111 11111000011122211 2457
Q ss_pred CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
|+++.+++... .-...+..|+++..+++++...
T Consensus 203 d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 203 DVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred CEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCC
Confidence 88888876311 1244567788888888887643
No 330
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.73 E-value=0.13 Score=55.41 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=61.7
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCEE
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV 240 (394)
..++.|+|+|++|+.+++.| ...|.++++.|.+++.. +. +++.|. ........+.+-+ +.+||.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~--------~~~~g~-~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAV-NL--------MRKYGY-KVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHH-HH--------HHhCCC-eEEEeeCCCHHHHHhcCCccCCEE
Confidence 35799999999999999998 78899999999987642 21 122222 1111122333322 6789999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
+++++....+..++ .....+.|...+|--+|
T Consensus 469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence 99999655554433 33444556666665544
No 331
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=94.71 E-value=0.38 Score=48.04 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=49.6
Q ss_pred ccCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (394)
.+.|+||+++|= +++..+.+..++.-+|++|.+..|..-.......+ .++..| ..+....++++.++.||
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~ea~~~aD 228 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVIS----DIENAG---HKITITDQLEGNLDKAD 228 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHHccCC
Confidence 588999999998 57788888765435599999988754321112111 122222 22334579999999999
Q ss_pred EEEEc
Q 016162 239 VISLH 243 (394)
Q Consensus 239 iV~l~ 243 (394)
+|..-
T Consensus 229 vvyt~ 233 (338)
T PRK08192 229 ILYLT 233 (338)
T ss_pred EEEEc
Confidence 99874
No 332
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.65 E-value=0.11 Score=54.60 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=70.8
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh-HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
+.+++|.|+|+|..|.++|+.| ...|.+|.++|..... .... +...+ .+..........+.+..+|+|+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~--------L~~~~-~~~~~~~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTREAPPNLAA--------LRAEL-PDAEFVGGPFDPALLDGVDLVA 74 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCCCchhHHH--------HHhhc-CCcEEEeCCCchhHhcCCCEEE
Confidence 5688999999999999999987 7999999999975432 1111 11111 0111111111234567899998
Q ss_pred Ec--CCCC-----hhh-------hhcccH-HHH-hcC--------CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162 242 LH--PVLD-----KTT-------YHLINK-ERL-ATM--------KKEAILVNCSRGPVIDEVALVEHLKQNP 290 (394)
Q Consensus 242 l~--lPlt-----~~t-------~~li~~-~~l-~~m--------k~gailIN~aRG~~vde~aL~~aL~~g~ 290 (394)
.. +|.+ |.- ..++.+ +.+ ..+ ++..+-|--+.|+.--..-|...|++..
T Consensus 75 ~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 75 LSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred ECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 86 4543 211 122322 222 112 2245667777899888888888887643
No 333
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.63 E-value=0.27 Score=51.11 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=72.9
Q ss_pred ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
+..+.++++.|||.|.+|.++|+.| ...|.+|.++|+.......... +.++..|. ....-.... ....+|+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~----~~l~~~gv---~~~~~~~~~-~~~~~D~ 81 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALA----AILEALGA---TVRLGPGPT-LPEDTDL 81 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHH----HHHHHcCC---EEEECCCcc-ccCCCCE
Confidence 3467899999999999999999987 6899999999976432211100 11222232 111111111 3456899
Q ss_pred EEEcC---CCChhhh-------hcccH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 240 ISLHP---VLDKTTY-------HLINK-ERL-ATMKK----EAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 240 V~l~l---Plt~~t~-------~li~~-~~l-~~mk~----gailIN~aRG~~vde~aL~~aL~~g 289 (394)
|++.. |.++... .++++ +.+ ..+.+ ..+-|--+.|+.--..-|...|+..
T Consensus 82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence 98875 3333211 12333 222 33422 2466777789988888888888763
No 334
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.59 E-value=0.046 Score=55.16 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=31.8
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.++|||||-|..|+.++..+ +.+|.+|+++|+++..
T Consensus 2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence 47899999999999999984 8999999999987643
No 335
>PRK06153 hypothetical protein; Provisional
Probab=94.53 E-value=0.16 Score=51.42 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=64.8
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh--------------hHH-H--HHHHhhhhhhhhcCCCCc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------TRL-E--KFVTAYGQFLKANGEQPV 222 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~--------------~~~-~--~~~~~~~~~~~~~~~~~~ 222 (394)
..|++++|+|||+|.+|+.++..|+ ..|. +++.+|...- ... . .+.+.....+...+. .+
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~-~I 249 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR-GI 249 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-eE
Confidence 3689999999999999999999986 5555 7888886511 100 0 111111111121111 11
Q ss_pred cc-cccCCHH--HHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162 223 TW-KRASSMD--EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (394)
Q Consensus 223 ~~-~~~~~l~--ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~ 276 (394)
.. ....+.+ +.+..+|+|+.|+. +.+++.++++.... .+.-+|+++-|-.
T Consensus 250 ~~~~~~I~~~n~~~L~~~DiV~dcvD-n~~aR~~ln~~a~~---~gIP~Id~G~~l~ 302 (393)
T PRK06153 250 VPHPEYIDEDNVDELDGFTFVFVCVD-KGSSRKLIVDYLEA---LGIPFIDVGMGLE 302 (393)
T ss_pred EEEeecCCHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEeeecce
Confidence 11 0111211 35788999999997 55678777766554 3556888766543
No 336
>PLN02602 lactate dehydrogenase
Probab=94.53 E-value=0.14 Score=51.44 Aligned_cols=103 Identities=18% Similarity=0.224 Sum_probs=59.6
Q ss_pred CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC-ccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~ 243 (394)
++|+|||.|.+|..+|-.++. ++.-++..+|...........+-. +...... .......+.++ +++||+|+++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~----~~~~~~~~~~i~~~~dy~~-~~daDiVVit 112 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQ----HAAAFLPRTKILASTDYAV-TAGSDLCIVT 112 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHH----hhhhcCCCCEEEeCCCHHH-hCCCCEEEEC
Confidence 699999999999999987632 444589999987644322222210 1110111 12221235554 8999999998
Q ss_pred CCC--Ch-hhh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q 016162 244 PVL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSR 273 (394)
Q Consensus 244 lPl--t~-~t~-~li--~-------~~~l~~mk~gailIN~aR 273 (394)
.-. .+ +++ .++ | .+.+....|.+++|+++.
T Consensus 113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 432 22 222 222 1 123444568889999873
No 337
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.50 E-value=0.3 Score=49.45 Aligned_cols=103 Identities=22% Similarity=0.201 Sum_probs=61.6
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh------------------hHHHHHHHhhhhhhhhcCC-C
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGE-Q 220 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~-~ 220 (394)
..+.+++|.|+|.|.+|..+++.| ...|. ++..+|+..- .+.+...+ .+.+... .
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~L-a~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~----~l~~~np~v 205 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYL-AAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQ----RLAALNPDV 205 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHH-HHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHH----HHHHHCCCC
Confidence 468999999999999999999998 46677 7889988620 11111111 1111111 1
Q ss_pred Cccc-c-c--cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 221 PVTW-K-R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 221 ~~~~-~-~--~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
.+.. . . ..+++++++++|+|+.|+- +.+++.++++.-.. .+.-+|..+
T Consensus 206 ~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~---~~ip~i~~~ 257 (376)
T PRK08762 206 QVEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK---LGKPLVYGA 257 (376)
T ss_pred EEEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 1100 0 1 1235667889999988875 56677777655443 334455543
No 338
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.46 E-value=0.087 Score=52.68 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=53.6
Q ss_pred CeEEEEec-ChHHHHHHHHHHhcC-CcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH-HhcccCEEE
Q 016162 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVIS 241 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~ 241 (394)
++|+|+|. |.+|+.+++.++ .. ++++.+ .++..... ...+.+. .. .+.... .+.++++ ...++|+|+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~-~~p~~elv~v~~~~~~g~--~l~~~~~-~~--~~~~~~---~~~~~~~~~~~~vD~Vf 73 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLL-NHPEVEIVAVTSRSSAGK--PLSDVHP-HL--RGLVDL---VLEPLDPEILAGADVVF 73 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHH-cCCCceEEEEECccccCc--chHHhCc-cc--ccccCc---eeecCCHHHhcCCCEEE
Confidence 58999996 999999999984 54 677655 55322111 0001110 00 000011 1222322 457899999
Q ss_pred EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (394)
Q Consensus 242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v 277 (394)
+|+|.... ..+. . ...+.|..+||.|-.-=.
T Consensus 74 ~alP~~~~-~~~v-~---~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 74 LALPHGVS-MDLA-P---QLLEAGVKVIDLSADFRL 104 (343)
T ss_pred ECCCcHHH-HHHH-H---HHHhCCCEEEECCcccCC
Confidence 99994322 2221 1 223579999999843333
No 339
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.46 E-value=0.34 Score=50.52 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=72.2
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
.+.++++.|+|+|.+|.++|+.| ...|++|.++|+..... .+.. +..| +.........+.+..+|+|+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l-------~~~g---i~~~~~~~~~~~~~~~d~vV 79 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLI-------EVTG---VADISTAEASDQLDSFSLVV 79 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHH-------HhcC---cEEEeCCCchhHhcCCCEEE
Confidence 57889999999999999999997 78999999999865432 1111 1112 11111112234467889987
Q ss_pred Ec--CC-CChhhh-------hcccHHHHh-c------C--CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162 242 LH--PV-LDKTTY-------HLINKERLA-T------M--KKEAILVNCSRGPVIDEVALVEHLKQNP 290 (394)
Q Consensus 242 l~--lP-lt~~t~-------~li~~~~l~-~------m--k~gailIN~aRG~~vde~aL~~aL~~g~ 290 (394)
.. +| ..|... .++++-.+. . + +...+-|--+.|+.--..-|...|+...
T Consensus 80 ~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 80 TSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred eCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 76 33 233321 123332332 1 1 2235567777899988888888887643
No 340
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.37 E-value=0.23 Score=51.38 Aligned_cols=113 Identities=22% Similarity=0.230 Sum_probs=70.3
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
++.|++|.|||+|.+|.++|+.| ...|.+|.++|....... . +...|.. .... +. +-+..+|+|+
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~--------l~~~g~~---~~~~-~~-~~~~~~d~vv 70 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K--------AAAAGIT---TADL-RT-ADWSGFAALV 70 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H--------HHhcCcc---ccCC-Ch-hHHcCCCEEE
Confidence 46789999999999999999987 799999999997643221 1 1112221 1111 12 2356799887
Q ss_pred EcC--CCC-h----hh---hh----cccH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 242 LHP--VLD-K----TT---YH----LINK-ERLAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 242 l~l--Plt-~----~t---~~----li~~-~~l~~-m-----k~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
..- |.+ + .. +. ++.+ +.+.. + +...+-|.-+.|+.--..-|...|+..
T Consensus 71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 642 322 2 11 11 1332 22222 2 344566788899999888888888763
No 341
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=94.24 E-value=2.8 Score=41.47 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=49.1
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+.|+||+++|- +++..+.+..+ ..||++|.+..|.... ....+...+.+...| . +....++++.++.+|+|
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~--~~~~~~~~~~~~~~g--~--i~~~~d~~~av~~aDvv 222 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAK--ENIHAQTVERAKKKG--T--LSWEMNLHKAVSHADYV 222 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCcc--HHHHHHHHHHHHhcC--C--eEEEeCHHHHhCCCCEE
Confidence 478999999997 68888888876 6899999999885421 110000000011112 1 22246899999999999
Q ss_pred EEc
Q 016162 241 SLH 243 (394)
Q Consensus 241 ~l~ 243 (394)
..-
T Consensus 223 y~d 225 (311)
T PRK14804 223 YTD 225 (311)
T ss_pred Eee
Confidence 763
No 342
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.24 E-value=0.2 Score=47.55 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=58.0
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HH-H-----------HHHhhhhhhhhcCC-CCccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-K-----------FVTAYGQFLKANGE-QPVTW 224 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~-~-----------~~~~~~~~~~~~~~-~~~~~ 224 (394)
..|++++|.|+|.|.+|..+|+.|+ ..|. +++.+|+..-.. +- + ..+.-...+++.+. ..+..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~ 98 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP 98 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 4689999999999999999999985 5565 677877654221 00 0 00000011111110 00000
Q ss_pred c--cc--CCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162 225 K--RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (394)
Q Consensus 225 ~--~~--~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~ 260 (394)
. .. .++++++.++|+|+.|+- +.+++.++++.-.+
T Consensus 99 ~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~ 137 (240)
T TIGR02355 99 INAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFA 137 (240)
T ss_pred EeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 0 11 235678899999998885 67788888765554
No 343
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=94.23 E-value=1.2 Score=44.31 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=62.5
Q ss_pred ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
.+.|+||+++|=+ ++.++.+..+ ..||++|....|..-...+...+..-......| ..+....++++.++.||+
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv 227 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDV 227 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 3789999999975 7888888876 689999999887532111111110000011112 123345789999999999
Q ss_pred EEEcC----CCCh----h-----hhhcccHHHHhcCC-CCcEEEEc
Q 016162 240 ISLHP----VLDK----T-----TYHLINKERLATMK-KEAILVNC 271 (394)
Q Consensus 240 V~l~l----Plt~----~-----t~~li~~~~l~~mk-~gailIN~ 271 (394)
|..-. .... + ...-++++.++.++ |++++.-+
T Consensus 228 vy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp 273 (332)
T PRK04284 228 IYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC 273 (332)
T ss_pred EEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence 97642 1000 0 11235666666664 46666655
No 344
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.23 E-value=0.44 Score=49.12 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=71.7
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
+.++++.|+|.|.+|.++|+.| ...|.+|.++|.......... ++.. ..++....-...++.+..+|+|+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~-------l~~~-~~gi~~~~g~~~~~~~~~~d~vv~ 73 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQ-------IGKM-FDGLVFYTGRLKDALDNGFDILAL 73 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHH-------Hhhc-cCCcEEEeCCCCHHHHhCCCEEEE
Confidence 5689999999999999999987 689999999997654311110 1110 011111111112345578999976
Q ss_pred cC--C-CChhhhh-------cccH-HHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162 243 HP--V-LDKTTYH-------LINK-ERLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQNP 290 (394)
Q Consensus 243 ~l--P-lt~~t~~-------li~~-~~l~~-mk---~gailIN~aRG~~vde~aL~~aL~~g~ 290 (394)
.. | ..|.-.. ++.+ +.+.. ++ ...+-|--+.|+.--..-|...|+...
T Consensus 74 spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 74 SPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 53 3 2222221 2322 23323 32 245667778899988888888887643
No 345
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.23 E-value=0.094 Score=53.25 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=61.5
Q ss_pred cCCCeEEEEec-ChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH-HHhcccCE
Q 016162 163 LKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLREADV 239 (394)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aDi 239 (394)
...++|+|+|. |.+|+++.+.| ... ++++..+.+....- ....+.+. ++.. + . .....+++ +.++++|+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL-~~hP~~el~~l~s~~saG-~~i~~~~~-~l~~-~--~--~~~~~~~~~~~~~~~Dv 107 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLL-ANHPDFEITVMTADRKAG-QSFGSVFP-HLIT-Q--D--LPNLVAVKDADFSDVDA 107 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHH-HhCCCCeEEEEEChhhcC-CCchhhCc-cccC-c--c--ccceecCCHHHhcCCCE
Confidence 35568999997 99999999997 455 77888776543221 10000000 0000 0 0 01112222 22588999
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016162 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV 283 (394)
Q Consensus 240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~ 283 (394)
|++++|. ... .+....|+.|..+||.|..--.+.++.+
T Consensus 108 Vf~Alp~-~~s-----~~i~~~~~~g~~VIDlSs~fRl~~~~~y 145 (381)
T PLN02968 108 VFCCLPH-GTT-----QEIIKALPKDLKIVDLSADFRLRDIAEY 145 (381)
T ss_pred EEEcCCH-HHH-----HHHHHHHhCCCEEEEcCchhccCCcccc
Confidence 9999994 233 3334445678999999865555544444
No 346
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.20 E-value=0.14 Score=50.45 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=44.2
Q ss_pred eEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-C---CccccccCCHHHHhcccCEEE
Q 016162 167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-Q---PVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~l~ell~~aDiV~ 241 (394)
+|+|||.|.||..+|..++. ++.-++..+|...........+ +.+... . ..... ..+ .+.++.||+|+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-----L~~~~~~~~~~~~~i~-~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-----FHHATALTYSTNTKIR-AGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-----HHhhhccCCCCCEEEE-ECC-HHHhCCCCEEE
Confidence 68999999999999987643 4444899999875432222222 111111 0 11111 234 46689999999
Q ss_pred EcCC
Q 016162 242 LHPV 245 (394)
Q Consensus 242 l~lP 245 (394)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 8753
No 347
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.19 E-value=0.2 Score=50.69 Aligned_cols=98 Identities=20% Similarity=0.148 Sum_probs=60.0
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--H------------HHHHHhhhhhhhhcCC-CCccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L------------EKFVTAYGQFLKANGE-QPVTW 224 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~------------~~~~~~~~~~~~~~~~-~~~~~ 224 (394)
..|.+++|.|||+|.+|..+++.|+ ..|. ++..+|...-.. + ....+.....+.+.+. ..+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 115 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA 115 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence 5699999999999999999999984 6676 788888762110 0 0000111111222111 11110
Q ss_pred c--c--cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162 225 K--R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (394)
Q Consensus 225 ~--~--~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~ 260 (394)
. . ..+++++++++|+|+.|+- +.+++.++++.-..
T Consensus 116 ~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~ 154 (370)
T PRK05600 116 LRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI 154 (370)
T ss_pred eeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 0 1 1245678999999988875 67888888765443
No 348
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.18 E-value=0.21 Score=45.97 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=32.5
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCch
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~ 199 (394)
+.|.+++|.|+|+|.+|.++++.|+ ..|. ++..+|...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECCc
Confidence 5689999999999999999999984 6677 688888663
No 349
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.18 E-value=0.21 Score=54.05 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=58.9
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCEE
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV 240 (394)
..++-|+|+|++|+.+++.| ...|.++++.|.++..... +++.|. .+......+.+-+ +.++|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~---------~~~~g~-~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHIET---------LRKFGM-KVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHHHH---------HHhcCC-eEEEEeCCCHHHHHhcCCCcCCEE
Confidence 46899999999999999998 7889999999988764221 122222 1111122343322 5689999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~ 271 (394)
+++++.++.+..++ .....+.|...++--
T Consensus 469 vv~~~d~~~n~~i~--~~ar~~~p~~~iiaR 497 (621)
T PRK03562 469 INAIDDPQTSLQLV--ELVKEHFPHLQIIAR 497 (621)
T ss_pred EEEeCCHHHHHHHH--HHHHHhCCCCeEEEE
Confidence 99998655544332 333344455555443
No 350
>PRK05086 malate dehydrogenase; Provisional
Probab=94.14 E-value=0.2 Score=49.49 Aligned_cols=101 Identities=26% Similarity=0.272 Sum_probs=58.0
Q ss_pred CeEEEEec-ChHHHHHHHHHHh--cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--cCCHHHHhcccCEE
Q 016162 166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLREADVI 240 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~~aDiV 240 (394)
++++|||. |.||+.+|..++. .++.++..+|+..... ....+ +.+... ...... ..++.+.++.+|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~-g~alD-----l~~~~~-~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTP-GVAVD-----LSHIPT-AVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCc-ceehh-----hhcCCC-CceEEEeCCCCHHHHcCCCCEE
Confidence 58999999 9999999977633 4566889999864321 00001 111110 011111 24667788999999
Q ss_pred EEcCCC--Chh-hh-hccc------HH---HHhcCCCCcEEEEcCC
Q 016162 241 SLHPVL--DKT-TY-HLIN------KE---RLATMKKEAILVNCSR 273 (394)
Q Consensus 241 ~l~lPl--t~~-t~-~li~------~~---~l~~mk~gailIN~aR 273 (394)
++|.-. .+. ++ .++. .+ .+....+.+++++++.
T Consensus 74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 998653 111 11 1111 22 2333457889999866
No 351
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.13 E-value=1.3 Score=43.64 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=47.8
Q ss_pred cCCCeEEEEec---ChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 163 l~gktvGIIGl---G~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (394)
+.|.+|+++|= +++..+.+..+ ..||+ +|.+..|..-. .. ......+....++++.++.+|
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~aD 219 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNSD 219 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCCC
Confidence 78999999998 59999999986 68999 99998875321 10 000012334578999999999
Q ss_pred EEEE
Q 016162 239 VISL 242 (394)
Q Consensus 239 iV~l 242 (394)
+|..
T Consensus 220 vvy~ 223 (310)
T PRK13814 220 VIVT 223 (310)
T ss_pred EEEE
Confidence 9976
No 352
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.04 E-value=0.055 Score=49.20 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=46.3
Q ss_pred eEEEEecChHHHHHHHH-HHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162 167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~-la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l 242 (394)
++.|||.|++|++++.. ..+..||++. +||..+...-. . ..++..+..+++++.++ +.|+.++
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~-----------~--~~~v~V~~~d~le~~v~~~dv~iaiL 152 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT-----------K--IGDVPVYDLDDLEKFVKKNDVEIAIL 152 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCc-----------c--cCCeeeechHHHHHHHHhcCccEEEE
Confidence 69999999999999953 2246788754 78887653110 1 11233445567888887 6788899
Q ss_pred cCCCC
Q 016162 243 HPVLD 247 (394)
Q Consensus 243 ~lPlt 247 (394)
|+|..
T Consensus 153 tVPa~ 157 (211)
T COG2344 153 TVPAE 157 (211)
T ss_pred EccHH
Confidence 99943
No 353
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.96 E-value=0.34 Score=50.25 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=73.4
Q ss_pred ccCCCeEEEEecChHHHH-HHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~-vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
..+++++.|+|+|..|.+ +|+.| ...|.+|.++|.......++ +...|. ......+ .+.+..+|+|
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~--------l~~~gi---~~~~~~~-~~~~~~~d~v 70 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQR--------LLELGA---IIFIGHD-AENIKDADVV 70 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHH--------HHHCCC---EEeCCCC-HHHCCCCCEE
Confidence 356789999999999999 79987 79999999999865432221 122221 1111123 3456789999
Q ss_pred EEcC--CCC-hhhh-------hcccHHHH-hc-CC-CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162 241 SLHP--VLD-KTTY-------HLINKERL-AT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP 290 (394)
Q Consensus 241 ~l~l--Plt-~~t~-------~li~~~~l-~~-mk-~gailIN~aRG~~vde~aL~~aL~~g~ 290 (394)
+... |.+ |... .++++-.| .. ++ ...+-|--+.|+.--+.-+...|+...
T Consensus 71 v~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 71 VYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 7763 322 2221 23444333 23 33 345667778899988888888887643
No 354
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.94 E-value=0.24 Score=48.59 Aligned_cols=100 Identities=22% Similarity=0.322 Sum_probs=57.9
Q ss_pred eEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh-----H--H---HH------HHHhhhhhhhhcCCCCcccc----
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-----R--L---EK------FVTAYGQFLKANGEQPVTWK---- 225 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~-----~--~---~~------~~~~~~~~~~~~~~~~~~~~---- 225 (394)
+|.|+|.|.+|..+|+.| .+.|. +++.+|...-. + + ++ +.+.-.+.+++... .+...
T Consensus 1 kVLIvGaGGLGs~vA~~L-a~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP-~v~v~~~~~ 78 (307)
T cd01486 1 KCLLLGAGTLGCNVARNL-LGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFP-SIDATGIVL 78 (307)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCC-CcEEEEeee
Confidence 589999999999999998 46776 67777743211 0 0 00 00000011111110 00000
Q ss_pred -------------------ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 226 -------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 226 -------------------~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
....++++++++|+|+.++. +.+++.+++.--... +..+|+.+
T Consensus 79 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~~---~k~~I~aa 140 (307)
T cd01486 79 SIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAAK---NKLVINAA 140 (307)
T ss_pred eccccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHh---CCcEEEEE
Confidence 11236789999999999994 788888876544432 33666654
No 355
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.93 E-value=0.13 Score=53.56 Aligned_cols=117 Identities=20% Similarity=0.198 Sum_probs=71.7
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
+.||+++|+|+|.-|.++|+.| ...|++|+++|...........+ ++..+. ......+ ++.+.++|+|+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~~~-----l~~~~~---~~~~~~~-~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREVGA-----LADAAL---LVETEAS-AQRLAAFDVVVK 75 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHHHH-----HhhcCE---EEeCCCC-hHHccCCCEEEE
Confidence 4689999999999999999997 79999999999654322111000 111111 0111112 355678999977
Q ss_pred cC--CCC-hhhh-------hcccHHHH--hc-CC-----CCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 243 HP--VLD-KTTY-------HLINKERL--AT-MK-----KEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 243 ~l--Plt-~~t~-------~li~~~~l--~~-mk-----~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
.. |.+ |.-+ .++++-.| .. ++ +..+-|--+.|+.--+.-|...|+..
T Consensus 76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 140 (468)
T PRK04690 76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA 140 (468)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 63 422 2211 24544333 33 32 24566777889998888888888753
No 356
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.92 E-value=0.22 Score=48.97 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=47.2
Q ss_pred CeEEEEecChHHHH-HHHHHHhcCC--c-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCE
Q 016162 166 QTVGVIGAGRIGSA-YARMMVEGFK--M-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV 239 (394)
Q Consensus 166 ktvGIIGlG~IG~~-vA~~la~~~G--~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi 239 (394)
.++||||+|.+++. .+..+ ...+ + -|.++|++.+. .+.+.+.|+ .. ..+.+++++++. .|+
T Consensus 4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~~-------~~----~~~~~~~~ll~~~~iD~ 70 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEFG-------IA----KAYTDLEELLADPDIDA 70 (342)
T ss_pred eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHcC-------CC----cccCCHHHHhcCCCCCE
Confidence 48999999988754 66665 4554 3 45567888765 333333332 11 245799999986 599
Q ss_pred EEEcCCCChh
Q 016162 240 ISLHPVLDKT 249 (394)
Q Consensus 240 V~l~lPlt~~ 249 (394)
|++|+|..-.
T Consensus 71 V~Iatp~~~H 80 (342)
T COG0673 71 VYIATPNALH 80 (342)
T ss_pred EEEcCCChhh
Confidence 9999995433
No 357
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.87 E-value=0.29 Score=44.07 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=52.6
Q ss_pred eEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh---hHHHH----------HHHhhhhhhhhcCC-CCcccc----cc
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA---TRLEK----------FVTAYGQFLKANGE-QPVTWK----RA 227 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~---~~~~~----------~~~~~~~~~~~~~~-~~~~~~----~~ 227 (394)
+|+|||.|.+|..+++.|+ ..|. ++..+|...- ....+ ..+.....+++.+. ...... ..
T Consensus 1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 5899999999999999984 5677 5888887651 00000 00000011111111 111000 01
Q ss_pred CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 228 ~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
.+++++++++|+|+.|+- +.+++..++......
T Consensus 80 ~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~ 112 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFD-NAETKAMLAESLLGN 112 (174)
T ss_pred hhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHH
Confidence 235677888999988854 677777666555543
No 358
>PRK07806 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.31 Score=45.32 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=32.2
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~ 200 (394)
.+.|+++.|.|. |.||+.+++.| ...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~ 41 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKA 41 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCch
Confidence 367899999996 99999999998 577999998887653
No 359
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.59 E-value=0.39 Score=49.48 Aligned_cols=96 Identities=14% Similarity=0.174 Sum_probs=62.3
Q ss_pred ccccCCCeEEEEec----------ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC
Q 016162 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (394)
Q Consensus 160 g~~l~gktvGIIGl----------G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (394)
+..+.|++|+|+|+ ..-+..+++.| ...|.+|.+|||........ ..+ + ...
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~--~~~-------~--------~~~ 370 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR--REY-------G--------IIP 370 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH--Hhc-------C--------ccc
Confidence 45689999999999 56788999998 68899999999984321110 000 0 011
Q ss_pred HHH-HhcccCEEEEcCCCChhhhhcccHHHHh-cCCCCcEEEEcCCCcc
Q 016162 230 MDE-VLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV 276 (394)
Q Consensus 230 l~e-ll~~aDiV~l~lPlt~~t~~li~~~~l~-~mk~gailIN~aRG~~ 276 (394)
+++ .+..||.|++++. .++-.. ++-+.+. .|+...++|| +|+-+
T Consensus 371 ~~~~~~~~ad~vvi~t~-h~~f~~-~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 371 VSEVKSSHYDAIIVAVG-HQQFKQ-MGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred chhhhhcCCCEEEEccC-CHHhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence 222 3678999999987 344333 4544443 4554568998 45444
No 360
>PRK04148 hypothetical protein; Provisional
Probab=93.52 E-value=0.24 Score=42.85 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=47.1
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
+++++.+||+| -|..+|..| ...|.+|++.|.++.... .. ...+........+..--++.+.+|+|-.+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~aV~-~a--------~~~~~~~v~dDlf~p~~~~y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKAVE-KA--------KKLGLNAFVDDLFNPNLEIYKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHHHH-HH--------HHhCCeEEECcCCCCCHHHHhcCCEEEEe
Confidence 56799999999 999999998 588999999999886422 11 11111111111122234678889999666
Q ss_pred CC
Q 016162 244 PV 245 (394)
Q Consensus 244 lP 245 (394)
=|
T Consensus 85 rp 86 (134)
T PRK04148 85 RP 86 (134)
T ss_pred CC
Confidence 55
No 361
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.49 E-value=0.48 Score=46.70 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=43.5
Q ss_pred CeEEEEec-ChHHHHHHHHHHhcCCc--EEEEEcCch--hhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~~G~--~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
++|+|+|. |.+|..+|..++ ..|. +|+.+|+.. ........+.+ +.+...+. ........+.+ .+..||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~-d~~~~~~~-~~~i~~~~d~~-~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIY-DALAAAGI-DAEIKISSDLS-DVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhh-hchhccCC-CcEEEECCCHH-HhCCCCEE
Confidence 48999998 999999999874 4443 699999854 21111111111 00001111 11121223544 49999999
Q ss_pred EEcCC
Q 016162 241 SLHPV 245 (394)
Q Consensus 241 ~l~lP 245 (394)
+++..
T Consensus 77 iitag 81 (309)
T cd05294 77 IITAG 81 (309)
T ss_pred EEecC
Confidence 99875
No 362
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.44 E-value=0.17 Score=49.95 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=26.5
Q ss_pred CeEEEEecChHHHHHHHHHHhcC-CcEEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL 197 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d~ 197 (394)
.+|||=|||+||+.++|.+...- .|+|++.+-
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence 37999999999999999974334 499998876
No 363
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.38 E-value=0.33 Score=46.28 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.7
Q ss_pred cCCCeEEEEecC---hHHHHHHHHHHhcCCcEEEEEcCc
Q 016162 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY 198 (394)
Q Consensus 163 l~gktvGIIGlG---~IG~~vA~~la~~~G~~V~~~d~~ 198 (394)
+.||++.|.|.+ .||+++|+.|+ .-|++|+..+++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence 689999999997 59999999984 679999988776
No 364
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.37 E-value=0.24 Score=46.02 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=33.7
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
++.++++.|+|. |.||+.+++.| ...|++|++++|+...
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 467899999985 89999999998 5779999999998754
No 365
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.33 E-value=0.12 Score=45.94 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=47.5
Q ss_pred EEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC--ccccccCCHHHHhcccCEEEEcC
Q 016162 168 VGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 168 vGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~l 244 (394)
|.|+| .|.+|+.+++.| ...|.+|+++.|++.+.... .+... ..+....++.+.++.+|.|+.++
T Consensus 1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~~-----------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAEDS-----------PGVEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHHC-----------TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhcccc-----------cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence 57898 599999999997 68889999999987653210 01100 01111234567788999999998
Q ss_pred CCChh
Q 016162 245 VLDKT 249 (394)
Q Consensus 245 Plt~~ 249 (394)
+.+..
T Consensus 69 ~~~~~ 73 (183)
T PF13460_consen 69 GPPPK 73 (183)
T ss_dssp HSTTT
T ss_pred hhhcc
Confidence 74433
No 366
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=93.30 E-value=0.69 Score=45.57 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=48.2
Q ss_pred ccCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (394)
Q Consensus 162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (394)
.+.|++|+++|= +++..+.+..+ ..||++|++..|..-.. . ... ......++++.++.||
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~-~-------------~~~--~~~~~~d~~ea~~~aD 215 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP-E-------------GMP--EYGVHTDLDEVIEDAD 215 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc-c-------------ccc--ceEEECCHHHHhCCCC
Confidence 378999999987 58999999986 68999999998754210 0 000 0123578999999999
Q ss_pred EEEEc
Q 016162 239 VISLH 243 (394)
Q Consensus 239 iV~l~ 243 (394)
+|...
T Consensus 216 vvyt~ 220 (305)
T PRK00856 216 VVMML 220 (305)
T ss_pred EEEEC
Confidence 99764
No 367
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=93.19 E-value=0.6 Score=48.46 Aligned_cols=111 Identities=20% Similarity=0.149 Sum_probs=71.4
Q ss_pred ccCCCeEEEEec----ChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc
Q 016162 162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (394)
Q Consensus 162 ~l~gktvGIIGl----G~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 235 (394)
-++-++|.|||. |++|..+.+.+ +..|+ +|+.++|.... ..+ ...+.+++++-.
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~-----------------i~G--~~~~~sl~~lp~ 63 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGE-----------------ILG--VKAYPSVLEIPD 63 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCc-----------------cCC--ccccCCHHHCCC
Confidence 356789999999 88999999997 66665 79888886432 111 223568999878
Q ss_pred ccCEEEEcCCCChhhhhcccHHHHhcCCC-CcEEEEcCCCc-----ccCHHHHHHHHHcCCcceEE
Q 016162 236 EADVISLHPVLDKTTYHLINKERLATMKK-EAILVNCSRGP-----VIDEVALVEHLKQNPMFRVG 295 (394)
Q Consensus 236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~-gailIN~aRG~-----~vde~aL~~aL~~g~l~gaa 295 (394)
..|++++++|. +.+...+. +..+ ..- ..+++..+-++ ...+++|.+..+++.+.-.+
T Consensus 64 ~~Dlavi~vp~-~~~~~~l~-e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 64 PVDLAVIVVPA-KYVPQVVE-ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred CCCEEEEecCH-HHHHHHHH-HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 88999999993 33344442 2222 333 34444333222 22357788888777665444
No 368
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=93.17 E-value=0.12 Score=45.60 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=26.6
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEc-Cc
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LY 198 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d-~~ 198 (394)
+|||-|||+||+.++|.+...-.++|.+.+ +.
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 799999999999999997556788887664 44
No 369
>PRK15076 alpha-galactosidase; Provisional
Probab=93.16 E-value=0.26 Score=50.92 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=71.1
Q ss_pred CeEEEEecChHHHHHHH--HHH--hcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~--~la--~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+|+|||.|.+|...+- .++ .++ +.+|+.||......... .....+.....+ .........++.+.++.||+|
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~-~~l~~~~~~~~~-~~~~i~~ttD~~eal~dADfV 79 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEES-EIVARKLAESLG-ASAKITATTDRREALQGADYV 79 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHH-HHHHHHHHHhcC-CCeEEEEECCHHHHhCCCCEE
Confidence 48999999999955443 222 344 45999999987542211 010111111112 223344456888999999999
Q ss_pred EEcCCCC--hhh----------hhcc-----------------c-------HHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 016162 241 SLHPVLD--KTT----------YHLI-----------------N-------KERLATMKKEAILVNCSRGPVIDEVALVE 284 (394)
Q Consensus 241 ~l~lPlt--~~t----------~~li-----------------~-------~~~l~~mk~gailIN~aRG~~vde~aL~~ 284 (394)
+.++-.. +.- ++++ + .+.+....|++++||++..-=+-+.++.
T Consensus 80 v~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~- 158 (431)
T PRK15076 80 INAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN- 158 (431)
T ss_pred eEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-
Confidence 8876432 111 0111 0 1223334589999999886655555555
Q ss_pred HHHcCCcceEE
Q 016162 285 HLKQNPMFRVG 295 (394)
Q Consensus 285 aL~~g~l~gaa 295 (394)
.+...++.|.+
T Consensus 159 ~~~~~rviG~c 169 (431)
T PRK15076 159 RYPGIKTVGLC 169 (431)
T ss_pred cCCCCCEEEEC
Confidence 22334455554
No 370
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.11 E-value=0.21 Score=49.61 Aligned_cols=76 Identities=25% Similarity=0.307 Sum_probs=46.6
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc---CCHHHHhcc
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE 236 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~ 236 (394)
.++.++|+|||. |+||+.+|..++. +..-++..+|..... ....+ +.+... ....... .+..+.++.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~--g~a~D-----l~~~~~-~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP--GVAAD-----LSHIDT-PAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc--ccccc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence 467789999999 9999999988631 455689999983211 10001 111111 1111111 223678999
Q ss_pred cCEEEEcCC
Q 016162 237 ADVISLHPV 245 (394)
Q Consensus 237 aDiV~l~lP 245 (394)
||+|+++.-
T Consensus 77 aDvVVitaG 85 (321)
T PTZ00325 77 ADLVLICAG 85 (321)
T ss_pred CCEEEECCC
Confidence 999998754
No 371
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.06 E-value=0.72 Score=47.28 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=70.1
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhh-hcCCCCccccccCCHHHHhcccCEEEEcC-
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASSMDEVLREADVISLHP- 244 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ell~~aDiV~l~l- 244 (394)
++.|||+|.+|.++|+.| ...|.+|.++|............ .++ ..| +....-.+ .+.+..+|+|+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~~g---i~~~~g~~-~~~~~~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLNEG---SVLHTGLH-LEDLNNADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhccC---cEEEecCc-hHHhccCCEEEECCC
Confidence 478999999999999997 79999999999765432211000 011 012 11111123 35568899887653
Q ss_pred -CC-Chhhh-------hcccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162 245 -VL-DKTTY-------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (394)
Q Consensus 245 -Pl-t~~t~-------~li~~~-~l-~~mk~gailIN~aRG~~vde~aL~~aL~~g~ 290 (394)
|. +|+-. .++.+- .+ ..++...+-|.-+.|+.--..-|...|+...
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 32 23221 133333 22 3344456677888999998888888888644
No 372
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.03 E-value=0.48 Score=43.79 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=30.4
Q ss_pred ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (394)
Q Consensus 162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~ 199 (394)
.+.++++.|.| .|.||+.+|+.| ...|++|+...++.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGS 39 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCC
Confidence 36789999998 599999999998 57799988776543
No 373
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.98 E-value=0.93 Score=41.75 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=33.6
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
++.|+++.|.|. |.||+.+++.+ ...|++|++.+|+...
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l-~~~G~~V~~~~r~~~~ 41 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFA-LKEGAQVCINSRNENK 41 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 367899999987 77999999997 5789999999998654
No 374
>PLN00106 malate dehydrogenase
Probab=92.94 E-value=0.23 Score=49.28 Aligned_cols=105 Identities=23% Similarity=0.245 Sum_probs=60.8
Q ss_pred CCCeEEEEec-ChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCC-Cccc-cccCCHHHHhcccCE
Q 016162 164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADV 239 (394)
Q Consensus 164 ~gktvGIIGl-G~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~aDi 239 (394)
..++|+|||. |++|..+|..|+. .+.-++..+|..... . ...+ +.+.... .... ...+++.+.++.||+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g-~a~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-G-VAAD-----VSHINTPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-e-eEch-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence 3469999999 9999999998732 444489999986621 0 0001 1111111 1111 123456788999999
Q ss_pred EEEcCC--CCh-hhh-hcc--c----H---HHHhcCCCCcEEEEcCCCc
Q 016162 240 ISLHPV--LDK-TTY-HLI--N----K---ERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 240 V~l~lP--lt~-~t~-~li--~----~---~~l~~mk~gailIN~aRG~ 275 (394)
|+++.- ..+ .++ .++ | . +.+....+.+++++++..-
T Consensus 90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 988743 222 122 111 1 1 2333345889999987643
No 375
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=92.91 E-value=0.17 Score=51.77 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=28.4
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCchhh
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT 201 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~~~~ 201 (394)
.+|||.|||+||+.++|.+...++++|++ +|+....
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~ 122 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDA 122 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCH
Confidence 49999999999999999852248999887 6655433
No 376
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.88 E-value=0.33 Score=48.81 Aligned_cols=98 Identities=27% Similarity=0.192 Sum_probs=57.5
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HH------------HHHHhhhhhhhhcCC-CCccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE------------KFVTAYGQFLKANGE-QPVTW 224 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~------------~~~~~~~~~~~~~~~-~~~~~ 224 (394)
..|++++|.|+|+|.+|..+++.|+ ..|. ++..+|...-.. +. ...+.-...+++.+. ..+..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~ 102 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTV 102 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEE
Confidence 5689999999999999999999985 5565 688888654110 00 000000011111111 11110
Q ss_pred c--c--cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162 225 K--R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (394)
Q Consensus 225 ~--~--~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~ 260 (394)
. . ..+..++++.+|+|+.|+- +.+++.+++..-.+
T Consensus 103 ~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~ 141 (355)
T PRK05597 103 SVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAAR 141 (355)
T ss_pred EEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 0 1 1234578899999998885 56777777664443
No 377
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.84 E-value=0.78 Score=47.28 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=60.8
Q ss_pred CeEEEEecChHHHHHHHHHHhc---------CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~---------~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 235 (394)
-+|||+|+|.||+.+++.+.+. .+.+|. ++|++..... . ..... .....++++++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~-~-----------~~~~~--~~~~~d~~~ll~ 69 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR-G-----------VDLPG--ILLTTDPEELVN 69 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc-C-----------CCCcc--cceeCCHHHHhh
Confidence 4799999999999998776321 245544 5577654310 0 00001 112468999985
Q ss_pred --ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016162 236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM 291 (394)
Q Consensus 236 --~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l 291 (394)
+.|+|+.+++...... +-..+.++.|.-+|...-+.+ -.-+.|.++.++..+
T Consensus 70 d~~iDvVve~tg~~~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 70 DPDIDIVVELMGGIEPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CCCCCEEEECCCCchHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 4799999987432111 112244556655554322222 233677777766554
No 378
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.77 E-value=0.63 Score=46.19 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=59.2
Q ss_pred CeEEEEec-ChHHHHHHHHHHh-cCCc-----EEEEEcCchhh--HHHHHHHhhhhhhhhcC-CCCccccccCCHHHHhc
Q 016162 166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~-~~G~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~ 235 (394)
++|+|||. |.+|..+|-.++. ++-- ++..+|..... ......+ +.+.. ..........+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-----l~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAME-----LEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehh-----hhhccccccCceEEecCcHHHhC
Confidence 58999999 9999999987632 2322 79999985322 1111111 11110 00000111134457799
Q ss_pred ccCEEEEcCCC--Ch-hhh-hcc--cH-------HHHhcCC-CCcEEEEcCCCcccCHHHHH
Q 016162 236 EADVISLHPVL--DK-TTY-HLI--NK-------ERLATMK-KEAILVNCSRGPVIDEVALV 283 (394)
Q Consensus 236 ~aDiV~l~lPl--t~-~t~-~li--~~-------~~l~~mk-~gailIN~aRG~~vde~aL~ 283 (394)
+||+|+++.-. .+ +|+ .++ |. ..+.... |.+++|.++ .++|.-.-+
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 137 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI 137 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence 99999988532 22 122 111 11 1233334 588999986 555554433
No 379
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=92.74 E-value=0.49 Score=41.52 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=51.1
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
..|++|++||+ + +++++++ +.-+.+++++|+++...... ... . .....++++++||+|++
T Consensus 9 ~~~~~V~~VG~--f-~P~~~~l-~~~~~~v~v~d~~~~~~~~~-------------~~~--~-~~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 9 GPGDKVGMVGY--F-QPLVEKL-KERGAEVRVFDLNPDNIGEE-------------PGD--V-PDEDAEEILPWADVVII 68 (147)
T ss_dssp TTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--SS-------------CT---E-EGGGHHHHGGG-SEEEE
T ss_pred cCCCEEEEEcC--c-HHHHHHH-hcCCCCEEEEECCCCCCCCC-------------CCc--C-CHHHHHHHHccCCEEEE
Confidence 57899999996 1 2367777 57889999999988542110 000 1 22467889999999987
Q ss_pred cCCCChhhhhccc---HHHHhcCCCCcEEEEc
Q 016162 243 HPVLDKTTYHLIN---KERLATMKKEAILVNC 271 (394)
Q Consensus 243 ~lPlt~~t~~li~---~~~l~~mk~gailIN~ 271 (394)
.= .-++| ++.|++.+++..++=.
T Consensus 69 TG------sTlvN~Ti~~iL~~~~~~~~vil~ 94 (147)
T PF04016_consen 69 TG------STLVNGTIDDILELARNAREVILY 94 (147)
T ss_dssp EC------HHCCTTTHHHHHHHTTTSSEEEEE
T ss_pred Ee------eeeecCCHHHHHHhCccCCeEEEE
Confidence 62 11233 4566666656555443
No 380
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=92.69 E-value=0.29 Score=52.42 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=34.2
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~ 200 (394)
....|||||||-|..|+.+++.+ +.+|++|+++|+.+.
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLED 56 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence 47889999999999999999985 899999999998764
No 381
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.69 E-value=0.35 Score=46.77 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=33.1
Q ss_pred cccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (394)
Q Consensus 161 ~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~ 200 (394)
..+.||++.|.| .|.||..+|+++ ...|++|+.+++...
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l-~~~G~~V~l~~r~~~ 81 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLF-AKEGADIAIVYLDEH 81 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 468899999998 488999999998 467999999988653
No 382
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.67 E-value=0.77 Score=44.49 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=31.2
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~ 201 (394)
++++.|+|.|..+++++-.| ...|+ +|++++|+.++
T Consensus 122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~ 158 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKT 158 (272)
T ss_pred CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH
Confidence 46899999999999999987 57787 69999998754
No 383
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.60 E-value=0.57 Score=46.45 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=57.7
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch--hhHHHHHHHhhhhhhhhcCCCCccccccCCHHH--HhcccC
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREAD 238 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~aD 238 (394)
..|++|.|+|.|.||...++.+ +..|++|++++++. ..+.+ ..+ ..|...+.. ...++.+ .....|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~-~~~-------~~Ga~~v~~-~~~~~~~~~~~~~~d 240 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKAD-IVE-------ELGATYVNS-SKTPVAEVKLVGEFD 240 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHH-HHH-------HcCCEEecC-CccchhhhhhcCCCC
Confidence 3588999999999999999875 88999999998742 12211 111 122211100 1112211 224578
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
+|+-++.. +. .+ .+.++.++++..++.++.
T Consensus 241 ~vid~~g~-~~---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 241 LIIEATGV-PP---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred EEEECcCC-HH---HH-HHHHHHccCCcEEEEEec
Confidence 88888752 11 12 456677888888877653
No 384
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.56 E-value=0.39 Score=47.46 Aligned_cols=103 Identities=21% Similarity=0.316 Sum_probs=59.6
Q ss_pred eEEEEec-ChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc---cCCHHHHhcccCEEE
Q 016162 167 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS 241 (394)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDiV~ 241 (394)
||+|||. |.+|..+|-.|+. .+.-++..+|..... ....+ +.+. ........ -.++.+.++.||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~--g~a~D-----L~~~-~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA--GVAAD-----LSHI-PTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc--EEEch-----hhcC-CcCceEEEecCCCchHHHcCCCCEEE
Confidence 6899999 9999999987643 444589999986621 11111 1111 11111211 124567899999999
Q ss_pred EcCCC--Chh-hh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 016162 242 LHPVL--DKT-TY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDE 279 (394)
Q Consensus 242 l~lPl--t~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vde 279 (394)
++.-. .+. ++ .++ |. +.+..-.|++++|+++. ++|.
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 88542 221 11 111 11 23344468999999865 4553
No 385
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.55 E-value=1.1 Score=46.24 Aligned_cols=115 Identities=19% Similarity=0.162 Sum_probs=69.3
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhcccCEEEEc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH 243 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l~ 243 (394)
+-+++|+|+|.+|.++|+.| ...|.+|.++|........+. ++..+ .++.... ..+ .+.+.++|+|+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------l~~~~-~g~~~~~~~~~-~~~~~~~d~vV~s 75 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDT-------LAREF-PDVELRCGGFD-CELLVQASEIIIS 75 (448)
T ss_pred CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHH-------HHhhc-CCcEEEeCCCC-hHHhcCCCEEEEC
Confidence 45899999999999999987 799999999997653211110 11100 0111111 123 3456789988765
Q ss_pred C--CC-Chhhh-------hcccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 244 P--VL-DKTTY-------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 244 l--Pl-t~~t~-------~li~~-~~l-~~mk~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
- |. +|+-. .++.+ +.+ ..++...+-|--+.|+.--..-+...|+..
T Consensus 76 p~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 133 (448)
T PRK03803 76 PGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA 133 (448)
T ss_pred CCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 3 32 22211 13433 233 334444566777889998888888888753
No 386
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.48 E-value=0.65 Score=45.53 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~ 201 (394)
.|.+|.|+|.|.+|...++.+ +.+|++ |++.+++..+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~ 200 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPER 200 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence 488999999999999999985 899998 9999887654
No 387
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=92.35 E-value=2 Score=42.86 Aligned_cols=74 Identities=11% Similarity=0.103 Sum_probs=46.7
Q ss_pred c-CCCeEEEEecC-------hHHHHHHHHHHhcCCcEEEEEcC-chhhHHHHHH---HhhhhhhhhcCCCCccccccCCH
Q 016162 163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFV---TAYGQFLKANGEQPVTWKRASSM 230 (394)
Q Consensus 163 l-~gktvGIIGlG-------~IG~~vA~~la~~~G~~V~~~d~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l 230 (394)
+ .|+||+|+|.| ++..+.+..+ ..||++|.+..| ..-...+... +++ +...| ..+....++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~---~~~~g---~~~~~~~d~ 238 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQN---AAESG---GSLTVSHDI 238 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHH---HHHcC---CeEEEEcCH
Confidence 6 79999887654 6778888775 689999999988 3211111111 111 11112 223345789
Q ss_pred HHHhcccCEEEEc
Q 016162 231 DEVLREADVISLH 243 (394)
Q Consensus 231 ~ell~~aDiV~l~ 243 (394)
++.++.+|+|..-
T Consensus 239 ~ea~~~aDvvy~~ 251 (335)
T PRK04523 239 DSAYAGADVVYAK 251 (335)
T ss_pred HHHhCCCCEEEec
Confidence 9999999999653
No 388
>PRK10206 putative oxidoreductase; Provisional
Probab=92.32 E-value=0.35 Score=48.26 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=42.9
Q ss_pred eEEEEecChHHHH-HHHHHHhc-CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEE
Q 016162 167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (394)
Q Consensus 167 tvGIIGlG~IG~~-vA~~la~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~ 241 (394)
++||||+|.|++. .+..+... -++++. ++|++.... ++.+.| +. ...+.++++++. +.|+|+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~~----~~~~~~~~ell~~~~iD~V~ 69 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------SH----IHFTSDLDEVLNDPDVKLVV 69 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------CC----CcccCCHHHHhcCCCCCEEE
Confidence 7999999998864 34433222 257775 588875432 222222 11 123568999996 579999
Q ss_pred EcCCCC
Q 016162 242 LHPVLD 247 (394)
Q Consensus 242 l~lPlt 247 (394)
+|+|..
T Consensus 70 I~tp~~ 75 (344)
T PRK10206 70 VCTHAD 75 (344)
T ss_pred EeCCch
Confidence 999944
No 389
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=92.14 E-value=4.4 Score=39.75 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=64.9
Q ss_pred cCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhh-cCCCCccccccCCHHHHhcccCEE
Q 016162 163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 163 l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
++|+|+..+|=| +++.++.... ..+||+|...-|..-.-.+++.+ ..+. +...+..+....++++.++.||+|
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~----~a~~~a~~~g~~i~~t~d~~eAv~gADvv 225 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVE----KAKENAKESGGKITLTEDPEEAVKGADVV 225 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHH----HHHHHHHhcCCeEEEecCHHHHhCCCCEE
Confidence 899999999876 5777776663 58999999887654332222211 1111 011122233456899999999999
Q ss_pred EEcCCCC--hhhh-----------hcccHHHHhcCCCCcEEEEc
Q 016162 241 SLHPVLD--KTTY-----------HLINKERLATMKKEAILVNC 271 (394)
Q Consensus 241 ~l~lPlt--~~t~-----------~li~~~~l~~mk~gailIN~ 271 (394)
..-+..+ .+.. .-+|++.++..+++++|.-|
T Consensus 226 yTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 226 YTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred EecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 6443321 2221 34677777777888888777
No 390
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.13 E-value=0.92 Score=45.32 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=55.9
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcc-ccccCCHHHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRASSMDEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiV~l 242 (394)
.|++|.|.|.|.+|...++. ++.+|.+|++.+....+..+ ..+ +.|..... ......+.++....|+|+-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~vi~~~~~~~~~~~-~~~-------~~Ga~~vi~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKI-GKAFGLKVTVISSSSNKEDE-AIN-------RLGADSFLVSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCcchhhh-HHH-------hCCCcEEEcCCCHHHHHhhcCCCCEEEE
Confidence 58899999999999999998 48999999888766543211 111 11211100 0000122233334677777
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
++. .+.+ + ...+..++++..++.++.
T Consensus 254 ~~g-~~~~---~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 254 TVS-AVHA---L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CCC-CHHH---H-HHHHHHhcCCcEEEEeCC
Confidence 664 2111 1 335666778877777753
No 391
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=92.13 E-value=0.27 Score=49.05 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=29.8
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~ 200 (394)
||||||-|..|+.+++.+ +.+|++|+++|+++.
T Consensus 1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~ 33 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDAN 33 (352)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCC
Confidence 699999999999999985 789999999998753
No 392
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=92.06 E-value=0.85 Score=45.27 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=66.6
Q ss_pred cCCCeEEEEecChHHHHHHHHHHh------cCCcEEEEE--cCchhhHHHHHHHhhhhhhhhcC-------CCCcccccc
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVE------GFKMNLIYY--DLYQATRLEKFVTAYGQFLKANG-------EQPVTWKRA 227 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~------~~G~~V~~~--d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 227 (394)
-.-++|+|||.|+=|+.+|+.++. .|..+|..| +-..... +.+..+..- -++.+ ..+......
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN-~~heN~KYlpg~~lP~NvvAv 96 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIIN-SRHENVKYLPGIKLPENVVAV 96 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhc-cccccccccCCccCCCCeEec
Confidence 345789999999999999998643 344445444 3222111 111111100 01111 122233345
Q ss_pred CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 228 ~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
+|+.+.+.+||+++..+|.+ -+.. |-++...+.|+++..|.+.-|=
T Consensus 97 ~dl~ea~~dADilvf~vPhQ-f~~~-ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 97 PDLVEAAKDADILVFVVPHQ-FIPR-ICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred chHHHHhccCCEEEEeCChh-hHHH-HHHHHhcccCCCCeEEEeecce
Confidence 78999999999999999932 2223 3467778899999999987663
No 393
>PRK06128 oxidoreductase; Provisional
Probab=91.97 E-value=0.55 Score=45.50 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=30.3
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~ 198 (394)
.++||++.|.|. |.||+.+|+.| ...|++|++..+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l-~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAF-AREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHH-HHcCCEEEEEeCC
Confidence 478999999985 89999999998 4779999876554
No 394
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.93 E-value=0.18 Score=43.12 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCch
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~ 199 (394)
.++|.|+|+|.+|..+|+.|+ ..|+ ++..+|+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence 579999999999999999985 5566 788888754
No 395
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.87 E-value=0.34 Score=45.00 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=47.9
Q ss_pred EEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEEEEcC
Q 016162 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 168 vGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l~l 244 (394)
|.|+|. |.+|+.+++.|. .-+.+|.+.-|.......+. ++..|..-+ .+....++.+.++.+|.|++++
T Consensus 1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~-------l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~ 72 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQ-------LQALGAEVVEADYDDPESLVAALKGVDAVFSVT 72 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHH-------HHHTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhh-------hhcccceEeecccCCHHHHHHHHcCCceEEeec
Confidence 578885 999999999984 57889998888764432221 122232111 1112345677899999999999
Q ss_pred CCC
Q 016162 245 VLD 247 (394)
Q Consensus 245 Plt 247 (394)
|..
T Consensus 73 ~~~ 75 (233)
T PF05368_consen 73 PPS 75 (233)
T ss_dssp SCS
T ss_pred Ccc
Confidence 854
No 396
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.86 E-value=0.82 Score=45.71 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=31.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~ 201 (394)
.|.+|.|.|.|.+|...++.+ +..|+ +|++.+++..+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~la-k~~G~~~Vi~~~~~~~r 228 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGA-VAAGASQVVAVDLNEDK 228 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEEcCCHHH
Confidence 478999999999999999874 89999 69999887654
No 397
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.84 E-value=1 Score=44.15 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=56.2
Q ss_pred CCeEEEEec-ChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-----ccc
Q 016162 165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA 237 (394)
Q Consensus 165 gktvGIIGl-G~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a 237 (394)
|.+|.|.|. |.+|...++. ++.+|+ +|++.+++.++... ..+. .|..........++.+.+ ...
T Consensus 155 ~~~VlI~ga~g~vG~~aiql-Ak~~G~~~Vi~~~~s~~~~~~-~~~~-------lGa~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQI-GRLLGCSRVVGICGSDEKCQL-LKSE-------LGFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred CCEEEEECCCcHHHHHHHHH-HHHcCCCEEEEEcCCHHHHHH-HHHh-------cCCcEEEECCCCCHHHHHHHHCCCCc
Confidence 489999998 9999999987 489999 89998877644211 0011 222111111112333322 246
Q ss_pred CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
|+|+-++.. + . + ...+..++++..+|.++
T Consensus 226 d~vid~~g~-~---~-~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 226 DVYFDNVGG-E---I-S-DTVISQMNENSHIILCG 254 (345)
T ss_pred eEEEECCCc-H---H-H-HHHHHHhccCCEEEEEe
Confidence 788776652 1 1 2 55677788888888775
No 398
>PRK06392 homoserine dehydrogenase; Provisional
Probab=91.83 E-value=0.8 Score=45.56 Aligned_cols=121 Identities=13% Similarity=0.158 Sum_probs=62.4
Q ss_pred eEEEEecChHHHHHHHHHHhc-------CCcEEEE-EcCchhhHHHHH--HHhhhhhhhhcCCCCcccc-ccCCHHHHh-
Q 016162 167 TVGVIGAGRIGSAYARMMVEG-------FKMNLIY-YDLYQATRLEKF--VTAYGQFLKANGEQPVTWK-RASSMDEVL- 234 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~-------~G~~V~~-~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~ell- 234 (394)
+|+|+|+|++|+.+++.|.+. ++.+|.+ .|++.....+.- .+..-+.... +... ... ...++++++
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~-~~~~~~~~~~~ll~ 79 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLE-EIDYEKIKFDEIFE 79 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-Cccc-cCCCCcCCHHHHhc
Confidence 799999999999999987432 5677654 454421100000 0000000111 1100 000 012566664
Q ss_pred cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC
Q 016162 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP 290 (394)
Q Consensus 235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v-de~aL~~aL~~g~ 290 (394)
.++|+|+=|+|...+...-. .-..+.++.|.-+|-..-|.+. .-+.|.++.+++.
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred CCCCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence 46899999998532111111 2223446778888877766653 4456666665543
No 399
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=91.83 E-value=0.23 Score=41.24 Aligned_cols=98 Identities=12% Similarity=0.187 Sum_probs=55.2
Q ss_pred ecChHHHHHHHHHHhc---CCcEEE-EEcCc--hhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEEc
Q 016162 172 GAGRIGSAYARMMVEG---FKMNLI-YYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH 243 (394)
Q Consensus 172 GlG~IG~~vA~~la~~---~G~~V~-~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~ 243 (394)
|+|.||+.+++.+.+. ++++|. ++|++ ......... . ......++++++. ..|+|+=|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF----------P----DEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH----------T----HSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc----------c----cccccCCHHHHhcCcCCCEEEEC
Confidence 8999999999998432 267755 55666 111111100 0 0113468999988 99999988
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc---CHHHHHHHHHc
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI---DEVALVEHLKQ 288 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v---de~aL~~aL~~ 288 (394)
.+..+.+ +-....++.|.-+|-.+-|.+. .-+.|.++.++
T Consensus 67 t~~~~~~-----~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~ 109 (117)
T PF03447_consen 67 TSSEAVA-----EYYEKALERGKHVVTANKGALADEALYEELREAARK 109 (117)
T ss_dssp SSCHHHH-----HHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHH
T ss_pred CCchHHH-----HHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHH
Confidence 6633222 2234456788889988888877 33344444443
No 400
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=91.68 E-value=0.37 Score=54.78 Aligned_cols=106 Identities=11% Similarity=0.160 Sum_probs=65.8
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHH-----H-----hhh----h--hhhhcCCCCccc--
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV-----T-----AYG----Q--FLKANGEQPVTW-- 224 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~-----~-----~~~----~--~~~~~~~~~~~~-- 224 (394)
+.-.++.|+|.|++|+..++.+ .++|++ . .++..-+.+.+.. + .|+ . ..++.+ .+-.+
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~f~~ 276 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKD-PSKQFDK 276 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccC-Cccccch
Confidence 4457899999999999999986 799888 3 3332221111000 0 000 0 000000 00000
Q ss_pred -------cccCC--HHHHhcccCEEEEcCCCChhhhhcccHH-HHhcCCCCc----EEEEcC
Q 016162 225 -------KRASS--MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS 272 (394)
Q Consensus 225 -------~~~~~--l~ell~~aDiV~l~lPlt~~t~~li~~~-~l~~mk~ga----ilIN~a 272 (394)
..+.+ +++.+..+|+|+.|+-..+.+-.++..+ ..+.||+|+ +|+|++
T Consensus 277 ~~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 277 ADYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00001 4578899999999997777788899888 778899998 898876
No 401
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.60 E-value=1.4 Score=43.80 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=31.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~ 201 (394)
.|++|.|.|.|.+|...++. ++.+|++ |++.+++..+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~-ak~~G~~~Vi~~~~~~~~ 213 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAG-AALAGASKIIAVDIDDRK 213 (358)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence 47899999999999999998 4899985 9888887654
No 402
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=91.54 E-value=1.1 Score=45.66 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=48.7
Q ss_pred ccCCCeEEEEec-----C---hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH
Q 016162 162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (394)
Q Consensus 162 ~l~gktvGIIGl-----G---~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (394)
.+.|+||+|+|- | ++.++++..+ ..+|++|.+..|..-...++..+.--+..+..| ..+....++++.
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea 259 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA 259 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 478999999985 5 5668888875 689999999988632111111110000011112 123335799999
Q ss_pred hcccCEEEEc
Q 016162 234 LREADVISLH 243 (394)
Q Consensus 234 l~~aDiV~l~ 243 (394)
++.||+|..-
T Consensus 260 v~~aDvVYtd 269 (395)
T PRK07200 260 FKDADIVYPK 269 (395)
T ss_pred hCCCCEEEEc
Confidence 9999999765
No 403
>PLN02214 cinnamoyl-CoA reductase
Probab=91.38 E-value=0.56 Score=46.54 Aligned_cols=83 Identities=12% Similarity=-0.016 Sum_probs=48.9
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (394)
.++++++.|.|. |-||+.+++.| ..-|.+|++.+|...............................+++++++.+|+|
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 467899999997 99999999998 5779999999886543111100100000000000000111223567788899998
Q ss_pred EEcCC
Q 016162 241 SLHPV 245 (394)
Q Consensus 241 ~l~lP 245 (394)
+-+..
T Consensus 86 ih~A~ 90 (342)
T PLN02214 86 FHTAS 90 (342)
T ss_pred EEecC
Confidence 77654
No 404
>PRK07877 hypothetical protein; Provisional
Probab=91.24 E-value=0.7 Score=50.72 Aligned_cols=98 Identities=18% Similarity=0.154 Sum_probs=59.0
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhh-----HH----H----HHHHhhhhhhhhcCC-CCccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQAT-----RL----E----KFVTAYGQFLKANGE-QPVTW 224 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~-----~~----~----~~~~~~~~~~~~~~~-~~~~~ 224 (394)
..|++++|+|+|+| +|+.+|..|+ ..| -+++.+|...-. +. . .+.+.....+.+.+. ..+..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999 8999999985 445 277777653211 00 0 000000011111110 11110
Q ss_pred c----ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162 225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (394)
Q Consensus 225 ~----~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~ 261 (394)
. ...++++++..+|+|+-|+. +-+++.++++.-...
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 0 11357888999999999996 678899998765543
No 405
>PRK13529 malate dehydrogenase; Provisional
Probab=91.18 E-value=5.2 Score=42.57 Aligned_cols=207 Identities=20% Similarity=0.207 Sum_probs=124.5
Q ss_pred hCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (394)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~ 186 (394)
+..|.+.|+-- .-+|--+++-+|+.+|- .|..|.+.++.|.|.|..|-.+|+.+..
T Consensus 261 r~~i~~FnDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~ 316 (563)
T PRK13529 261 RDEICTFNDDI---QGTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIVA 316 (563)
T ss_pred ccCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHH
Confidence 34677777654 34577778888887772 3457899999999999999999998753
Q ss_pred c---CCc-------EEEEEcCch---hh--HHHHHHHhhhhhhhhcCCCCccc---cccCCHHHHhccc--CEEEEcCCC
Q 016162 187 G---FKM-------NLIYYDLYQ---AT--RLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPVL 246 (394)
Q Consensus 187 ~---~G~-------~V~~~d~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~a--DiV~l~lPl 246 (394)
+ .|. +++.+|+.. .. .+..+...|.. ..... ..| ....+|.|+++.+ |+++=+-
T Consensus 317 ~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~---~~~~~-~~~~~~~~~~~L~e~v~~~kPtvLIG~S-- 390 (563)
T PRK13529 317 AMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYAR---KREEL-ADWDTEGDVISLLEVVRNVKPTVLIGVS-- 390 (563)
T ss_pred HHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhh---hcccc-cccccccCCCCHHHHHhccCCCEEEEec--
Confidence 2 476 789988762 11 12333334421 11100 001 1125899999998 9887542
Q ss_pred ChhhhhcccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCCc-ceEEeeccCCCCCCC----CccccCCceE
Q 016162 247 DKTTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNPM-FRVGLDVFEDEPYMK----PGLSEMKNAI 316 (394)
Q Consensus 247 t~~t~~li~~~~l~~mk~---gailIN~aRG~~vde~aL~~aL~--~g~l-~gaalDV~~~EP~~~----~~L~~~~nvi 316 (394)
..-+.|.++.++.|.+ ..+|.=.|+...--|-.-.+|.+ +|+. .+.|. -| .|... ...-+..|++
T Consensus 391 --~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs-pf--~pv~~~G~~~~p~Q~NN~~ 465 (563)
T PRK13529 391 --GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS-PF--APVEYNGKTYPIGQCNNAY 465 (563)
T ss_pred --CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC-CC--CCeeeCCeEeccCcCccee
Confidence 2247899999999987 89999999866522322223333 4543 22222 11 11110 1123457999
Q ss_pred EcCCCCCCcH-----HHHHHHHHHHHHHHHHHHcCCC
Q 016162 317 VVPHIASASK-----WTREGMATLAALNVLGKIKGYP 348 (394)
Q Consensus 317 lTPHia~~t~-----~~~~~~~~~~~~ni~~~l~g~~ 348 (394)
+-|-++-... .--+.|...+++.+-+...-+.
T Consensus 466 iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~~ 502 (563)
T PRK13529 466 IFPGLGLGVIASGARRVTDGMLMAAAHALADCVPLAK 502 (563)
T ss_pred ecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCcccc
Confidence 9998875322 1225566666676666554443
No 406
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.17 E-value=0.77 Score=44.72 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=51.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
.|+++.|+|.|.||...++.+ +.+|++ |.+.|+..... +. ++... ....-++.-...|+|+-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~a-k~~G~~~v~~~~~~~~rl-~~-----------a~~~~----~i~~~~~~~~g~Dvvid 206 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLT-KAAGGSPPAVWETNPRRR-DG-----------ATGYE----VLDPEKDPRRDYRAIYD 206 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHHH-Hh-----------hhhcc----ccChhhccCCCCCEEEE
Confidence 477899999999999999874 899997 55667654331 11 01100 01111111234688877
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
|... +.+ + ...++.++++..++.++
T Consensus 207 ~~G~-~~~---~-~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 207 ASGD-PSL---I-DTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CCCC-HHH---H-HHHHHhhhcCcEEEEEe
Confidence 7652 111 1 34566778888887764
No 407
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.16 E-value=2 Score=44.21 Aligned_cols=115 Identities=19% Similarity=0.195 Sum_probs=68.7
Q ss_pred cCC-CeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccc-ccCCHHHHhcccCE
Q 016162 163 LKG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV 239 (394)
Q Consensus 163 l~g-ktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi 239 (394)
+.+ +++.|||+|.+|.+.++.|.+.-| ++|.++|........+ .++. + +... ...+. +.+.++|+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~-------~l~~-g---~~~~~g~~~~-~~~~~~d~ 71 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQE-------QLPE-D---VELHSGGWNL-EWLLEADL 71 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHH-------Hhhc-C---CEEEeCCCCh-HHhccCCE
Confidence 445 789999999999999998854444 8999999754321111 0111 1 1111 11133 34578998
Q ss_pred EEEcC--CC-Chhhh-------hcccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 240 ISLHP--VL-DKTTY-------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 240 V~l~l--Pl-t~~t~-------~li~~-~~l-~~mk~gailIN~aRG~~vde~aL~~aL~~g 289 (394)
|+... |. +|+-. .++.+ +.+ ..++...+-|--+.|+.--..-|...|+..
T Consensus 72 vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~ 133 (438)
T PRK04663 72 VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAA 133 (438)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence 87653 32 23221 13333 233 334545666777889998888888888753
No 408
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.07 E-value=1.1 Score=44.26 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=80.4
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHH-hhhhhhhhcCC-CCccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-AYGQFLKANGE-QPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
++|.|+|.|.||+-++-+| ...|..|+..-|... .+++.+ .+ .+..... ..... ....-.+.+..+|+|+++
T Consensus 1 mkI~IlGaGAvG~l~g~~L-~~~g~~V~~~~R~~~--~~~l~~~GL--~i~~~~~~~~~~~-~~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARL-AKAGHDVTLLVRSRR--LEALKKKGL--RIEDEGGNFTTPV-VAATDAEALGPADLVIVT 74 (307)
T ss_pred CeEEEECCcHHHHHHHHHH-HhCCCeEEEEecHHH--HHHHHhCCe--EEecCCCcccccc-ccccChhhcCCCCEEEEE
Confidence 4899999999999999998 466777877776653 122211 11 0111111 00001 112223556789999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc--CCCCCCCCccccCCceEEcCCC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF--EDEPYMKPGLSEMKNAIVVPHI 321 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~--~~EP~~~~~L~~~~nvilTPHi 321 (394)
+- +-++...+ +......++.+.++-.-. ++=.++.+-+.....++. .|+..+ ..+....-.......+.+.+.-
T Consensus 75 vK-a~q~~~al-~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~ 150 (307)
T COG1893 75 VK-AYQLEEAL-PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELR 150 (307)
T ss_pred ec-cccHHHHH-HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCC
Confidence 85 33444443 556667788877764433 344455555555544222 222222 2221111123345677777776
Q ss_pred CCCc
Q 016162 322 ASAS 325 (394)
Q Consensus 322 a~~t 325 (394)
++.+
T Consensus 151 ~~~~ 154 (307)
T COG1893 151 GGRD 154 (307)
T ss_pred CCch
Confidence 6554
No 409
>PRK07411 hypothetical protein; Validated
Probab=91.07 E-value=0.71 Score=47.07 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=59.4
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HHH------------HHHhhhhhhhhcCC-CCccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGE-QPVTW 224 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~-~~~~~ 224 (394)
..|+.++|+|||+|.+|..+|+.|+ ..|. ++..+|...-.. +-+ ..+...+.+++.+. ..+..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~ 112 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL 112 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence 4689999999999999999999985 5555 678887653210 000 00000111111111 00100
Q ss_pred c--cc--CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCC
Q 016162 225 K--RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (394)
Q Consensus 225 ~--~~--~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk 263 (394)
. .. .+..+++.++|+|+.|+- +.+++.++++.-...-+
T Consensus 113 ~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~ 154 (390)
T PRK07411 113 YETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNK 154 (390)
T ss_pred EecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 0 11 234577899999988875 66788888766554433
No 410
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.07 E-value=1.9 Score=44.67 Aligned_cols=112 Identities=14% Similarity=0.091 Sum_probs=63.6
Q ss_pred CeEEEEec-ChHHHHHHHHHHhc--CC------cEEEEEcCchhhHHHHHHHhhhhhhhhcC-CCCccccccCCHHHHhc
Q 016162 166 QTVGVIGA-GRIGSAYARMMVEG--FK------MNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~--~G------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~ 235 (394)
-+|+|||. |.+|..+|-.|+.+ || -+++.+|..........++. .+.- ..........+-.+.++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL-----~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMEL-----EDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHH-----HHhhhhhcCceEEecCCHHHhC
Confidence 48999999 99999999876433 22 37889998776543332221 1110 00001111123457799
Q ss_pred ccCEEEEcCC--CChh-hh--------hccc--HHHHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 016162 236 EADVISLHPV--LDKT-TY--------HLIN--KERLAT-MKKEAILVNCSRGPVIDEVALVE 284 (394)
Q Consensus 236 ~aDiV~l~lP--lt~~-t~--------~li~--~~~l~~-mk~gailIN~aRG~~vde~aL~~ 284 (394)
+||+|+++.- ..+. ++ .++. .+.+.. ..+.+++|.++ .++|.-..+-
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~ 236 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALIC 236 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHH
Confidence 9999998853 2221 11 1121 123444 46788998886 4555555443
No 411
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.06 E-value=0.68 Score=45.98 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=43.3
Q ss_pred CeEEEEec-ChHHHHHHHHHHhcCCc-------EEEEEcCchhh--HHHHHHHhhhhhhhhcC-CCCccccccCCHHHHh
Q 016162 166 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVL 234 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell 234 (394)
.+|+|||. |.+|+.+|-.| ...|. ++..+|..... ......+ +.+.. ..........+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l-~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-----l~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRI-ASGELFGKDQPVVLHLLDIPPAMKALEGVAME-----LEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHH-HhCCcccCCCccEEEEEecCCcccccchHHHH-----HhhccccccCCcEEecChHHHh
Confidence 38999998 99999999876 33343 79999985421 1111111 11111 0000011113456779
Q ss_pred cccCEEEEcCC
Q 016162 235 READVISLHPV 245 (394)
Q Consensus 235 ~~aDiV~l~lP 245 (394)
++||+|+++.-
T Consensus 78 ~daDvVVitAG 88 (323)
T TIGR01759 78 KDVDAALLVGA 88 (323)
T ss_pred CCCCEEEEeCC
Confidence 99999998753
No 412
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.05 E-value=0.7 Score=47.48 Aligned_cols=114 Identities=19% Similarity=0.135 Sum_probs=68.1
Q ss_pred ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 241 (394)
++.++++.|+|+|..|.+.++.| +..|.+|.++|.......... +. .| +.........+.+...|+|+
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~-------l~-~g---~~~~~~~~~~~~~~~~d~vv 70 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDK-------LP-EN---VERHTGSLNDEWLLAADLIV 70 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHH-------Hh-cC---CEEEeCCCCHHHhcCCCEEE
Confidence 35688999999999999999876 688999999997543211110 11 11 11111111224467788766
Q ss_pred EcCCCChhhhh-----------cccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162 242 LHPVLDKTTYH-----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (394)
Q Consensus 242 l~lPlt~~t~~-----------li~~-~~l~~-mk~gailIN~aRG~~vde~aL~~aL~~ 288 (394)
..- .-+.... ++.+ +.+.. ++...+-|--+.|+.--..-|...|+.
T Consensus 71 ~sp-gi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 71 ASP-GIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred ECC-CCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 543 2222111 2332 33333 343455577778998888888888875
No 413
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=91.05 E-value=1.1 Score=44.00 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=55.4
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC-HHHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~l 242 (394)
.|.++.|.|.|.+|+.+++.+ +.+|++|++.+++...... ...+ +..........+ ..+.-...|+|+-
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~~~~~--~~~~-------g~~~vi~~~~~~~~~~~~~~~d~v~~ 238 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPSKKED--ALKL-------GADEFIATKDPEAMKKAAGSLDLIID 238 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHHHHHH--HHHc-------CCcEEecCcchhhhhhccCCceEEEE
Confidence 467999999999999999885 8999999999887643211 1111 111100000001 1122345677777
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
|.+... .-...++.++++..+++++.
T Consensus 239 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 239 TVSASH-----DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred CCCCcc-----hHHHHHHHhcCCCEEEEEec
Confidence 766321 12445666777777777654
No 414
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=91.04 E-value=0.7 Score=45.69 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=48.0
Q ss_pred CeEEEEe-cChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
.+|+|+| .|-.|+++.+.| ... ..++.....+... . ..+.++.+.++|+|++|
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL-~~hp~~~l~~~~s~~~~-------------------~-----~~~~~~~~~~~DvvFla 57 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERL-AGRSDIELLSIPEAKRK-------------------D-----AAARRELLNAADVAILC 57 (313)
T ss_pred cEEEEECCCCHHHHHHHHHH-hcCCCeEEEEEecCCCC-------------------c-----ccCchhhhcCCCEEEEC
Confidence 4799999 899999999998 444 3455443222110 0 02334567889999999
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
+|... ...+. .+. .+.|+.+||.|
T Consensus 58 lp~~~-s~~~~-~~~---~~~g~~VIDlS 81 (313)
T PRK11863 58 LPDDA-AREAV-ALI---DNPATRVIDAS 81 (313)
T ss_pred CCHHH-HHHHH-HHH---HhCCCEEEECC
Confidence 99332 22221 222 24688999987
No 415
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.97 E-value=0.45 Score=46.94 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=46.5
Q ss_pred CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-C--CccccccCCHHHHhcccCEEE
Q 016162 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-Q--PVTWKRASSMDEVLREADVIS 241 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~ell~~aDiV~ 241 (394)
++|+|||.|.||+++|-+|.. .++-++..||.......-...+ +.+... . ........+ .+-++.||+|+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D-----L~~~~~~~~~~~~i~~~~~-y~~~~~aDiVv 74 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD-----LSHAAAPLGSDVKITGDGD-YEDLKGADIVV 74 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc-----hhhcchhccCceEEecCCC-hhhhcCCCEEE
Confidence 489999999999999987643 5666899999883321111111 111110 0 011111022 35689999999
Q ss_pred EcC--CCChh
Q 016162 242 LHP--VLDKT 249 (394)
Q Consensus 242 l~l--Plt~~ 249 (394)
++. |..|.
T Consensus 75 itAG~prKpG 84 (313)
T COG0039 75 ITAGVPRKPG 84 (313)
T ss_pred EeCCCCCCCC
Confidence 987 66654
No 416
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.96 E-value=1.4 Score=42.81 Aligned_cols=94 Identities=20% Similarity=0.177 Sum_probs=57.5
Q ss_pred CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc-CCHHHHh-----cc
Q 016162 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVL-----RE 236 (394)
Q Consensus 164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell-----~~ 236 (394)
.|.+|.|.| -|.+|...++. ++..|++|++.+++..+. + + ++..|......... .++.+.+ ..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiql-Ak~~G~~Vi~~~~s~~~~-~-~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKV-A-Y-------LKKLGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHH-HHHcCCEEEEEeCCHHHH-H-H-------HHHcCCCEEEeccccccHHHHHHHhCCCC
Confidence 478999999 59999999998 489999999888775432 1 1 11222211100011 1233322 13
Q ss_pred cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
.|+|+-++. .+ .+ ...++.++++..+|.++.
T Consensus 208 vdvv~d~~G-~~----~~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 208 YDCYFDNVG-GE----FS-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred eEEEEECCC-HH----HH-HHHHHHhCcCcEEEEecc
Confidence 677777664 11 12 556778888888888764
No 417
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.94 E-value=0.43 Score=36.81 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=29.5
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~ 200 (394)
++.|||-|.+|-++|..+ ..+|.+|+.+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence 588999999999999998 689999999987664
No 418
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=90.91 E-value=1.2 Score=46.09 Aligned_cols=126 Identities=15% Similarity=0.261 Sum_probs=73.3
Q ss_pred CeEEEEecChHHHH--HHHHHHh---cCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 166 QTVGVIGAGRIGSA--YARMMVE---GFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 166 ktvGIIGlG~IG~~--vA~~la~---~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
.||.|||.|+. .. +.+-+.+ .++ -+|..+|...... +. ...+...+.+.......+....|.++.+..||+
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADf 77 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADF 77 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCE
Confidence 48999999986 33 2222221 343 6899999987542 11 122222222222234455667899999999999
Q ss_pred EEEcCCCCh-h----------hhhccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162 240 ISLHPVLDK-T----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (394)
Q Consensus 240 V~l~lPlt~-~----------t~~li~----------------------~~~l~~mk~gailIN~aRG~~vde~aL~~aL 286 (394)
|++.+--.. + -+++++ .+.+....|++++||.+..--+-+.++.+..
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~~ 157 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRLF 157 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHC
Confidence 987754221 1 122332 1223334589999999987766666666554
Q ss_pred HcCCcceE
Q 016162 287 KQNPMFRV 294 (394)
Q Consensus 287 ~~g~l~ga 294 (394)
...++.|.
T Consensus 158 ~~~kviGl 165 (437)
T cd05298 158 PNARILNI 165 (437)
T ss_pred CCCCEEEE
Confidence 33444443
No 419
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=90.81 E-value=1.2 Score=44.31 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=25.2
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~ 197 (394)
.+|||=|||+||+.+.|.+...-+.+|.+.+.
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd 34 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND 34 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEec
Confidence 38999999999999999853344688887654
No 420
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.80 E-value=1.3 Score=44.18 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=58.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccc-ccCCHHHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l 242 (394)
.|.++.|.|.|.+|...++. ++..|.+|++.++...+... ..+.+ |....... ....+.++....|+|+-
T Consensus 180 ~g~~vlV~G~G~vG~~av~~-Ak~~G~~vi~~~~~~~~~~~-~~~~~-------Ga~~~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKI-AKAMGHHVTVISSSDKKREE-ALEHL-------GADDYLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCeEEEEcccHHHHHHHHH-HHHCCCeEEEEeCCHHHHHH-HHHhc-------CCcEEecCCChHHHHHhcCCCcEEEE
Confidence 57899999999999999988 48999999888876543221 11112 22110000 00112333345688888
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
++... .+ -...+..++++..++.++.
T Consensus 251 ~~g~~-~~----~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 251 TVPVF-HP----LEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred CCCch-HH----HHHHHHHhccCCEEEEECC
Confidence 87622 11 1345677888888888764
No 421
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.80 E-value=2 Score=41.84 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=67.4
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
|++++|||--.=-..+++.| ...|++|..|.-..... +.. +.....+.++.++++|+|++-+
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~~---------------~~~--~~~~~~~~~~~~~~~~~~i~p~ 62 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLED---------------GFT--GAVKCELLELDLTTLDVVILPV 62 (287)
T ss_pred CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEecccccc---------------ccc--cceeecchhhhhccCCEEEECC
Confidence 67999999888888899998 68899887775321100 000 1222345566699999999999
Q ss_pred CCChhhh----------hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162 245 VLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (394)
Q Consensus 245 Plt~~t~----------~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ 292 (394)
|.+.+.. --++++.+++|++++++ -++. +..+|-++.++..+.
T Consensus 63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~~-~~G~----~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCTI-YVGI----SNPYLEQLAADAGVK 115 (287)
T ss_pred ccccCCceEecccccCCccccHHHHHhcCCCCEE-EEec----CCHHHHHHHHHCCCe
Confidence 9666532 12568899999987653 3333 334455455544443
No 422
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=90.78 E-value=4 Score=38.28 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=34.0
Q ss_pred eEEEEeCCCCch-HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCC
Q 016162 16 YRVVSTKPMPGT-RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71 (394)
Q Consensus 16 ~~vlv~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~ 71 (394)
|+||||.+-+.. ...+.|++.|+++.....-+....+++..+.+.+.+|.||..+.
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~ 57 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSA 57 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECH
Confidence 579999988763 34578889998886654333221223333333334788876654
No 423
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.75 E-value=0.61 Score=49.72 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=32.6
Q ss_pred cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
-.|+++.|.|. |.||+.+++.| ...|++|++++|+...
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ek 116 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQR 116 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence 46789999986 99999999998 5779999999988654
No 424
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=90.74 E-value=2 Score=40.60 Aligned_cols=156 Identities=16% Similarity=0.223 Sum_probs=87.7
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh---HHHHHHHhhhhhhhhcCCC----C-----ccccccCCHHHH
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQ----P-----VTWKRASSMDEV 233 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~l~el 233 (394)
.+|+|+|-|.+|+.-|..+ .+-|++|..||..... .++...++. ..++.+|.. . .......++.|+
T Consensus 4 ~ki~ivgSgl~g~~WAmlF-As~GyqVqlYDI~e~Ql~~ALen~~Kel-~~Lee~g~lrGnlsa~eqla~is~t~~l~E~ 81 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLF-ASSGYQVQLYDILEKQLQTALENVEKEL-RKLEEHGLLRGNLSADEQLALISGTTSLNEL 81 (313)
T ss_pred cceeEeecccccchHHHHH-hccCceEEEeeccHHHHHHHHHHHHHHH-HHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence 4799999999999999988 4889999999987654 122211111 112222211 0 112235688999
Q ss_pred hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCC
Q 016162 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK 313 (394)
Q Consensus 234 l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~ 313 (394)
.+.|=+|==|+|-.-+-+.-+ -+.+...-....++..|+ +.+-..-+-+.|...+ .+.-.+|. ++|++ .|
T Consensus 82 vk~Ai~iQEcvpE~L~lkk~l-y~qlD~i~d~~tIlaSST-St~mpS~~s~gL~~k~------q~lvaHPv-NPPyf-iP 151 (313)
T KOG2305|consen 82 VKGAIHIQECVPEDLNLKKQL-YKQLDEIADPTTILASST-STFMPSKFSAGLINKE------QCLVAHPV-NPPYF-IP 151 (313)
T ss_pred HhhhhhHHhhchHhhHHHHHH-HHHHHHhcCCceEEeccc-cccChHHHhhhhhhhh------heeEecCC-CCCcc-cc
Confidence 999888888887332222111 122333334444554444 3445555555555443 11223454 33433 35
Q ss_pred ceEEcCCCCCCcHHHHHHHHH
Q 016162 314 NAIVVPHIASASKWTREGMAT 334 (394)
Q Consensus 314 nvilTPHia~~t~~~~~~~~~ 334 (394)
=|=+-|| -+.++++.++...
T Consensus 152 LvElVPa-PwTsp~tVdrt~~ 171 (313)
T KOG2305|consen 152 LVELVPA-PWTSPDTVDRTRA 171 (313)
T ss_pred hheeccC-CCCChhHHHHHHH
Confidence 5667787 5777777666544
No 425
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=90.66 E-value=1.6 Score=42.62 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.|.+|.|.|.|.+|+.+++.+ +.+|.+|++.++....
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a-~~~G~~vi~~~~~~~~ 199 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYA-AKMGFRTVAISRGSDK 199 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCChHH
Confidence 578999999999999999984 8999999999886543
No 426
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=90.61 E-value=1.9 Score=44.40 Aligned_cols=127 Identities=17% Similarity=0.238 Sum_probs=72.7
Q ss_pred CeEEEEecChHHHH-HHHHHHh---cCC-cEEEEEcCc-hhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 166 QTVGVIGAGRIGSA-YARMMVE---GFK-MNLIYYDLY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 166 ktvGIIGlG~IG~~-vA~~la~---~~G-~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
.||.|||.|..-.. +.+-+++ .++ -+|..||.. +.. ++. ...+...+.+.......+....++++.+..||+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~r-l~~-v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEK-LEI-VGALAKRMVKKAGLPIKVHLTTDRREALEGADF 78 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHH-HHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 47999999997432 3333322 244 689999998 443 211 111111122222223445556799999999999
Q ss_pred EEEcCCCChh-hh----------hccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162 240 ISLHPVLDKT-TY----------HLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (394)
Q Consensus 240 V~l~lPlt~~-t~----------~li~----------------------~~~l~~mk~gailIN~aRG~~vde~aL~~aL 286 (394)
|+++.-.... .+ ++++ .+.+....|+++++|.+..--+-+.++.+..
T Consensus 79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~ 158 (419)
T cd05296 79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT 158 (419)
T ss_pred EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc
Confidence 9877532221 11 1110 1122333589999999987666667776655
Q ss_pred HcCCcceEE
Q 016162 287 KQNPMFRVG 295 (394)
Q Consensus 287 ~~g~l~gaa 295 (394)
..++.|.+
T Consensus 159 -~~rviGlc 166 (419)
T cd05296 159 -GDRVIGLC 166 (419)
T ss_pred -cCCEEeeC
Confidence 44555554
No 427
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.48 E-value=0.97 Score=42.26 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=33.6
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.+.||++.|.|. |.||+.+|+.| ...|++|++.+|+...
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l-~~~G~~V~~~~r~~~~ 46 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGL-AQAGAEVILNGRDPAK 46 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 478999999985 99999999998 4679999999987653
No 428
>PRK06172 short chain dehydrogenase; Provisional
Probab=90.47 E-value=0.64 Score=43.39 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=33.6
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.+.||++.|.|. |.||+.+|++| ...|++|++.+|+...
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~ 43 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAF-AREGAKVVVADRDAAG 43 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 478999999985 79999999998 5779999999998654
No 429
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.47 E-value=1.2 Score=43.20 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=58.2
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH--HH--hcccC
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREAD 238 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~aD 238 (394)
.|.++.|+|.|.+|+.+++.+ +..|++ |++.+++..... +...+ +..........+.. .. -...|
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~--~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKLE--LAKKL-------GATETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHHH--HHHHh-------CCeEEecCCCCCHHHHHHhcCCCCc
Confidence 578999999999999999985 899998 888887765421 11111 11100000001111 11 24578
Q ss_pred EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (394)
Q Consensus 239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 275 (394)
+++-+.+... ...+.+..++++..+++++...
T Consensus 229 ~v~~~~~~~~-----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 229 VVIEATGVPK-----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred EEEECCCChH-----HHHHHHHHHhcCCEEEEEecCC
Confidence 8888765211 2245567788888888887644
No 430
>PRK10537 voltage-gated potassium channel; Provisional
Probab=90.45 E-value=1.2 Score=45.48 Aligned_cols=90 Identities=8% Similarity=-0.054 Sum_probs=53.2
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCEE
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV 240 (394)
...+-|+|+|.+|+.+++.| +..|.++++.|+..... . ...+. ........+.+.+ +++|+.|
T Consensus 240 k~HvII~G~g~lg~~v~~~L-~~~g~~vvVId~d~~~~--~---------~~~g~-~vI~GD~td~e~L~~AgI~~A~aV 306 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGL-RQRGQAVTVIVPLGLEH--R---------LPDDA-DLIPGDSSDSAVLKKAGAARARAI 306 (393)
T ss_pred CCeEEEECCChHHHHHHHHH-HHCCCCEEEEECchhhh--h---------ccCCC-cEEEeCCCCHHHHHhcCcccCCEE
Confidence 56799999999999999998 67788888888653211 1 11111 1111112233222 5689999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEE
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILV 269 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailI 269 (394)
+++++.+.++...+ ...+.+.|+..+|
T Consensus 307 I~~t~dD~~Nl~iv--L~ar~l~p~~kII 333 (393)
T PRK10537 307 LALRDNDADNAFVV--LAAKEMSSDVKTV 333 (393)
T ss_pred EEcCCChHHHHHHH--HHHHHhCCCCcEE
Confidence 99888655544332 3344455554443
No 431
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.41 E-value=1.6 Score=43.25 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=32.3
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.|.+|.|+|.|.||...++.+ +..|.+|++.+++..+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a-~~~G~~vi~~~~~~~~ 202 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTA-KAMGAAVVAIDIDPEK 202 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHH
Confidence 478999999999999999984 8999999999887654
No 432
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.40 E-value=1.2 Score=44.84 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=32.1
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.|++|.|.|.|.+|...++. ++.+|++|++.++..+.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~~ 214 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSEK 214 (375)
T ss_pred CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChHH
Confidence 58899999999999999998 58999999998876543
No 433
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=90.38 E-value=1.5 Score=40.76 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=32.8
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~ 200 (394)
++.||++.|.|. |.||+.+|+.| ...|++|++.+|...
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~vi~~~r~~~ 40 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGL-AEAGADIVGAGRSEP 40 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCchH
Confidence 378999999997 89999999998 477999999998653
No 434
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.35 E-value=1.7 Score=41.54 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=31.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~ 201 (394)
.|.+|.|+|.|.||...++.+ +.+|.+ |++.+++..+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~~~~r 157 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADPSPDR 157 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence 688999999999999999984 899996 8888876543
No 435
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.33 E-value=2.5 Score=42.28 Aligned_cols=94 Identities=22% Similarity=0.197 Sum_probs=56.4
Q ss_pred CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccC-C----HHHHh--cc
Q 016162 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-S----MDEVL--RE 236 (394)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----l~ell--~~ 236 (394)
+.++.|+|.|.||...+..+ +.+|+ +|++.|++..+. +.. +.+ +.......... + ..++- ..
T Consensus 169 ~~~V~V~GaGpIGLla~~~a-~~~Ga~~Viv~d~~~~Rl-~~A-~~~-------~g~~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALA-KLLGASVVIVVDRSPERL-ELA-KEA-------GGADVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHHH-HHH-HHh-------CCCeEeecCccccHHHHHHHHhCCCC
Confidence 33999999999999988874 78886 677888877542 211 110 11111111111 1 11222 24
Q ss_pred cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
+|+++-|.. ++.+ -...+...+++..++.++-
T Consensus 239 ~D~vie~~G-~~~~----~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 239 ADVVIEAVG-SPPA----LDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CCEEEECCC-CHHH----HHHHHHHhcCCCEEEEEec
Confidence 899999887 3332 1456667788888887764
No 436
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=90.18 E-value=3.9 Score=35.30 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=48.3
Q ss_pred cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016162 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (394)
Q Consensus 227 ~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~ 301 (394)
..+.++++++||+|+-.-|.+ .+.++.|++|.++|-...-. ....+++.|.+.++...++|....
T Consensus 55 ~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 55 VSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp ESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred ecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 446679999999998776633 66778899999999887644 578888899889999999887654
No 437
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.12 E-value=5.7 Score=34.73 Aligned_cols=117 Identities=15% Similarity=0.027 Sum_probs=76.9
Q ss_pred CCceEEEEeCCCCc------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHh-cCCCcEEEecCC----ccccHHHHHH
Q 016162 13 NGKYRVVSTKPMPG------TRWINLLIEQDCRVEICTQKKTILSVEDIIALI-GDKCDGVIGQLT----EDWGETLFAA 81 (394)
Q Consensus 13 ~~~~~vlv~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~-~~~~d~ii~~~~----~~i~~~~l~~ 81 (394)
..++||++.+.-.+ .-....|++.|+++..... ..+++|+...+ ..++|+|.+++. ...-+.+.++
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~---~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~ 86 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL---FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEA 86 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC---cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHH
Confidence 36788888654322 2234567788998865432 34788877655 556899887653 2334677788
Q ss_pred hcccCCcEEEEcccCc-cccchhHHhhCCceEecCCCCCchhhHHHHHHHHH
Q 016162 82 LSRAGGKAFSNMAVGY-NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSL 132 (394)
Q Consensus 82 l~~l~~k~I~~~g~G~-d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L 132 (394)
|...|...|....-|+ --=|+...++.|+.=.-.|+-+...+++.++..+-
T Consensus 87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 8888877776444444 22256778899999999998877666666665543
No 438
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=90.12 E-value=1.2 Score=44.07 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=49.4
Q ss_pred eEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 167 tvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
+|+|+| -|-.|.++.|+|+.--.+++......... ...+.+++++++|++++|+|
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlalp 58 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCLP 58 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECCC
Confidence 789997 59999999999843335566544322110 01255677789999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 246 LDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 246 lt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
.. ....+. .. + .+.|+.+||.|
T Consensus 59 ~~-~s~~~~-~~-~--~~~g~~VIDlS 80 (310)
T TIGR01851 59 DD-AAREAV-SL-V--DNPNTCIIDAS 80 (310)
T ss_pred HH-HHHHHH-HH-H--HhCCCEEEECC
Confidence 43 223222 22 1 24688899887
No 439
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=90.08 E-value=1.3 Score=44.26 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=25.2
Q ss_pred CeEEEEecChHHHHHHHHHHhc--CCcEEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL 197 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~--~G~~V~~~d~ 197 (394)
.+|||=|||+||+.+.|.+... .+.+|.+.+.
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind 35 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAIND 35 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecC
Confidence 3899999999999999975333 4678887765
No 440
>PLN02427 UDP-apiose/xylose synthase
Probab=90.02 E-value=0.55 Score=47.22 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=33.8
Q ss_pred cccccCCCeEEEEe-cChHHHHHHHHHHhcC-CcEEEEEcCchh
Q 016162 159 VGNLLKGQTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQA 200 (394)
Q Consensus 159 ~g~~l~gktvGIIG-lG~IG~~vA~~la~~~-G~~V~~~d~~~~ 200 (394)
-|+.++.++|.|.| .|-||+.+++.| ..- |.+|+++|+...
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L-~~~~g~~V~~l~r~~~ 50 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKL-MTETPHKVLALDVYND 50 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHH-HhcCCCEEEEEecCch
Confidence 45678889999998 599999999998 454 589999997654
No 441
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.00 E-value=2.2 Score=42.12 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=52.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 242 (394)
.|.+|.|+|.|.||...++.+++.+ +.+|++.|++..+. +. ++..+.. ....++.+-. ..|+|+-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~~--------a~~~~~~----~~~~~~~~~~-g~d~viD 228 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-DL--------FSFADET----YLIDDIPEDL-AVDHAFE 228 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-HH--------HhhcCce----eehhhhhhcc-CCcEEEE
Confidence 4889999999999999888753235 46899999876542 11 1111110 0001111111 3688887
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
++... .+...+ ...+..++++..++.++
T Consensus 229 ~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 229 CVGGR-GSQSAI-NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCCCC-ccHHHH-HHHHHhCcCCcEEEEEe
Confidence 77521 011112 34566778887777664
No 442
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.97 E-value=0.89 Score=44.04 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=35.3
Q ss_pred ccccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 160 g~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
+..+.|+++.|.|. |.||+.+|+.| ..-|++|++.+|+...
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~L-a~~G~~Vi~~~R~~~~ 76 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQF-ARRGATVVAVARREDL 76 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence 46789999999986 99999999998 4679999999998643
No 443
>PRK08324 short chain dehydrogenase; Validated
Probab=89.95 E-value=0.89 Score=49.67 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=35.0
Q ss_pred cccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 161 ~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
..+.|+++.|.| .|.||+.+|+.+ ...|++|++.+++...
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA 458 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence 457899999999 599999999998 5789999999998754
No 444
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=89.92 E-value=1.7 Score=46.02 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=66.0
Q ss_pred ccCCCeEEEEec---ChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (394)
Q Consensus 162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (394)
.+.|++|+++|= |++..+.+..+ ..|| |+|....|..-...+.+.+ .+...| ..+....++++.++.|
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~----~a~~~G---~~v~i~~d~~eav~~A 242 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVE----KMKKNG---FEVRIFSSIEEYLSQK 242 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHhccC
Confidence 478999999998 58898988876 6788 9999888754321122111 111112 2233457899999999
Q ss_pred CEE--EE-------cCCCC-----hh--hhhcccHHHHhcCCCCcEEEEcC
Q 016162 238 DVI--SL-------HPVLD-----KT--TYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 238 DiV--~l-------~lPlt-----~~--t~~li~~~~l~~mk~gailIN~a 272 (394)
|+. .. .++.. .+ -...++++.++.+|+++++.-+.
T Consensus 243 D~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 243 DVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred CccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 952 22 22211 01 12346888999999998887764
No 445
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.78 E-value=0.82 Score=42.08 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=32.3
Q ss_pred cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
+.++++.|+|. |.||+.+++.|+ ..|++|++.+|++..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~ 42 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKE 42 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHH
Confidence 56789999985 999999999984 679999999987654
No 446
>CHL00194 ycf39 Ycf39; Provisional
Probab=89.77 E-value=0.69 Score=45.23 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=45.3
Q ss_pred CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEEEE
Q 016162 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL 242 (394)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l 242 (394)
++|.|+| .|.||+.+++.| ..-|.+|.+.+|+...... +...+.... ......++.+.+..+|+|+.
T Consensus 1 MkIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~~~---------l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKASF---------LKEWGAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred CEEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHhhh---------HhhcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 3789998 699999999998 5779999999987543210 011111000 01112356778999999887
Q ss_pred cCC
Q 016162 243 HPV 245 (394)
Q Consensus 243 ~lP 245 (394)
+.+
T Consensus 71 ~~~ 73 (317)
T CHL00194 71 AST 73 (317)
T ss_pred CCC
Confidence 654
No 447
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=89.75 E-value=7.4 Score=41.39 Aligned_cols=204 Identities=15% Similarity=0.117 Sum_probs=121.5
Q ss_pred CCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh-
Q 016162 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE- 186 (394)
Q Consensus 108 ~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~- 186 (394)
..|.+.|+-- .-+|-.+++-+|+.+|- .|..|.+.++.|.|.|..|-.+|+.+..
T Consensus 264 ~~i~~FnDDi---QGTaaV~lAgll~Alr~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~ 319 (559)
T PTZ00317 264 NKYRCFNDDI---QGTGAVIAAGFLNALKL---------------------SGVPPEEQRIVFFGAGSAAIGVANNIADL 319 (559)
T ss_pred cCCCEecccc---hhHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence 4577777554 34577788888888872 2357899999999999999999998743
Q ss_pred --cCCc-------EEEEEcCchh------hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc--CEEEEcCCCChh
Q 016162 187 --GFKM-------NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKT 249 (394)
Q Consensus 187 --~~G~-------~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~lPlt~~ 249 (394)
..|. +++.+|+..- ..+..+...|.. ...... .....+|.|+++.+ |+++=+- .
T Consensus 320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~---~~~~~~--~~~~~~L~e~v~~~KPtvLIG~S----~ 390 (559)
T PTZ00317 320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFAR---TDISAE--DSSLKTLEDVVRFVKPTALLGLS----G 390 (559)
T ss_pred HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhc---cccccc--cccCCCHHHHHhccCCCEEEEec----C
Confidence 2466 7888886521 002223333321 100000 00135899999999 9987542 1
Q ss_pred hhhcccHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHcCCcceEEeeccCCCCCC-C---CccccCCceEEcC
Q 016162 250 TYHLINKERLATMK---KEAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVVP 319 (394)
Q Consensus 250 t~~li~~~~l~~mk---~gailIN~aRG~~---vde~aL~~aL~~g~l~gaalDV~~~EP~~-~---~~L~~~~nvilTP 319 (394)
..+.|.++.++.|. +..+|.=.|+... ...++.+++ .+|+...|.=--| .|.. + ...-+..|+++-|
T Consensus 391 ~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~-T~Grai~AtGspf--~pv~~~G~~~~p~Q~NN~~iFP 467 (559)
T PTZ00317 391 VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKW-TNGRAIVASGSPF--PPVTLNGKTIQPSQGNNLYVFP 467 (559)
T ss_pred CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhh-ccCCEEEEECCCC--CCcccCCeeeccCcCcceeecc
Confidence 24689999999997 4899998888653 233333332 2455332221111 1211 0 1123457999999
Q ss_pred CCCCCcH-----HHHHHHHHHHHHHHHHHHcCC
Q 016162 320 HIASASK-----WTREGMATLAALNVLGKIKGY 347 (394)
Q Consensus 320 Hia~~t~-----~~~~~~~~~~~~ni~~~l~g~ 347 (394)
-++-... .--+.|...+++.+-++..-+
T Consensus 468 GiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~ 500 (559)
T PTZ00317 468 GVGLGCAIAQPSYIPDEMLIAAAASLATLVSEE 500 (559)
T ss_pred chhhhhHhhcccCCCHHHHHHHHHHHHhhCCcc
Confidence 8764221 122556666666666655433
No 448
>PRK12742 oxidoreductase; Provisional
Probab=89.71 E-value=1.9 Score=39.64 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=30.2
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~ 198 (394)
.+.||++.|.|. |.||+.+|+.| ...|++|+...+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence 467999999985 89999999998 5789998876553
No 449
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=89.71 E-value=0.88 Score=47.99 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=87.8
Q ss_pred cccCCCeEEEEecChH-HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 161 ~~l~gktvGIIGlG~I-G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
..+.|+...++|--.| |..++..| +-.+.+|...-. ...++.|.+.++|+
T Consensus 158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHS----------------------------KT~~lae~v~~ADI 208 (935)
T KOG4230|consen 158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHS----------------------------KTRNLAEKVSRADI 208 (935)
T ss_pred CccccceeEEEecccccCChHHHHH-HhcCceEEEecC----------------------------CCccHHHHhccCCE
Confidence 5689999999998876 88899887 677888876522 12578899999999
Q ss_pred EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcC
Q 016162 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319 (394)
Q Consensus 240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTP 319 (394)
|+.++-. .+++-.+. +|||+++|||+--.+-|.. =++| .-..=||-.++-. . ---.+||
T Consensus 209 vIvAiG~----PefVKgdW---iKpGavVIDvGINyvpD~~-----Kksg--~klvGDVdfe~Ak---e----vas~ITP 267 (935)
T KOG4230|consen 209 VIVAIGQ----PEFVKGDW---IKPGAVVIDVGINYVPDPS-----KKSG--FKLVGDVDFESAK---E----VASFITP 267 (935)
T ss_pred EEEEcCC----cceeeccc---ccCCcEEEEccccccCCCC-----Cccc--ceEeeecchHhhh---h----hhhcccc
Confidence 9999852 34444444 4899999999876554421 1222 1334476543321 1 1236888
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 016162 320 HIASASKWTREGMATLAALNVLGKIKG 346 (394)
Q Consensus 320 Hia~~t~~~~~~~~~~~~~ni~~~l~g 346 (394)
-=||.-+=+..-+..-+.+...++..+
T Consensus 268 VPGGVGPMTVAMLmqNtveaAKR~r~e 294 (935)
T KOG4230|consen 268 VPGGVGPMTVAMLMQNTVEAAKRQREE 294 (935)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 777766544444444445555555544
No 450
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=89.64 E-value=0.52 Score=41.47 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=24.8
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEE-EcC
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL 197 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~ 197 (394)
+|||+|+|+||+.+++.+...-++++.+ .|+
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 7999999999999999864455787765 554
No 451
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.63 E-value=1.8 Score=48.35 Aligned_cols=112 Identities=23% Similarity=0.287 Sum_probs=70.0
Q ss_pred CeEEEEecChHHHHH-HHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162 166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (394)
Q Consensus 166 ktvGIIGlG~IG~~v-A~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 244 (394)
+++.|+|+|.+|.+. |+.| ...|++|.++|.......+. ++..|. .+..-.+ .+.+..+|+|+..-
T Consensus 5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~gi---~~~~g~~-~~~~~~~d~vV~Sp 71 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKGA---RFFLGHQ-EEHVPEDAVVVYSS 71 (809)
T ss_pred ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCCC---EEeCCCC-HHHcCCCCEEEECC
Confidence 369999999999998 9987 79999999999765432221 222222 1111112 35677899998763
Q ss_pred --C-CChhhh-------hcccHHH-Hhc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162 245 --V-LDKTTY-------HLINKER-LAT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP 290 (394)
Q Consensus 245 --P-lt~~t~-------~li~~~~-l~~-mk~-gailIN~aRG~~vde~aL~~aL~~g~ 290 (394)
| .+|+-. .++++-. +.. ++. ..+-|--+.|+.--+.-+...|++..
T Consensus 72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 2 222211 2344332 222 332 35667778899988888888888643
No 452
>PRK06114 short chain dehydrogenase; Provisional
Probab=89.63 E-value=0.75 Score=43.12 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=32.4
Q ss_pred ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (394)
Q Consensus 162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~ 200 (394)
.+.||++.|.| -|.||+.+|++| ...|++|++.+++..
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD 43 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 57899999997 568999999998 578999999988654
No 453
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=89.61 E-value=2.5 Score=41.59 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=57.2
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH----HHHhc--c
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--E 236 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--~ 236 (394)
.|++|.|.|.|.+|...++.+ +..|+ +|++.+++..... +...+ |..........++ .++.. .
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~~--~~~~~-------ga~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILAL-KAAGASKIIVSEPSEARRE--LAEEL-------GATIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHh-------CCCEEECCCccCHHHHHHHHhCCCC
Confidence 578999999999999999985 89999 8888887665421 11111 2111100011122 22222 3
Q ss_pred cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
.|+|+-+... +.+ -...+..++++..++.++.
T Consensus 242 ~d~vid~~g~-~~~----~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 242 VDVSFDCAGV-QAT----LDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCEEEECCCC-HHH----HHHHHHhccCCCEEEEEcc
Confidence 7888877652 111 1455667788888888754
No 454
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.48 E-value=2.8 Score=43.28 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=68.0
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--cCC---HHHHhcccCEEE
Q 016162 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASS---MDEVLREADVIS 241 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---l~ell~~aDiV~ 241 (394)
+|.|||+|..|.+.|+.| ...|.+|.++|+.......... +.+...|. .+.. ..+ +.+.+.+.|.|+
T Consensus 2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~----~~l~~~gi---~~~~g~~~~~~~~~~~~~~~d~vv 73 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQ----QELEQEGI---TVKLGKPLELESFQPWLDQPDLVV 73 (459)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHH----HHHHHcCC---EEEECCccchhhhhHHhhcCCEEE
Confidence 689999999999999987 6889999999976543221100 01222221 1111 112 224678899987
Q ss_pred EcCCCChhhh----------hcccHH-HH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 016162 242 LHPVLDKTTY----------HLINKE-RL-ATMKK-EAILVNCSRGPVIDEVALVEHLKQN 289 (394)
Q Consensus 242 l~lPlt~~t~----------~li~~~-~l-~~mk~-gailIN~aRG~~vde~aL~~aL~~g 289 (394)
....-.+... .++.+- .+ ..+++ ..+-|--+.|+.--..-|...|+..
T Consensus 74 ~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~ 134 (459)
T PRK02705 74 VSPGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAA 134 (459)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 7433222211 123322 22 33333 4566777889998888888888753
No 455
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.41 E-value=0.93 Score=44.77 Aligned_cols=99 Identities=23% Similarity=0.302 Sum_probs=58.0
Q ss_pred CeEEEEec-ChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--c-CCHHHHhcccCE
Q 016162 166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADV 239 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~ell~~aDi 239 (394)
.+|+|||. |++|..+|-.+ ..-| -++..+|.. ... ....+ +.+.. ....... . +++.+.++.||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l-~~~~~~~elvLiDi~-~a~-g~alD-----L~~~~-~~~~i~~~~~~~~~y~~~~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLL-KLNPLVSELALYDIV-NTP-GVAAD-----LSHIN-TPAKVTGYLGPEELKKALKGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHH-HhCCCCcEEEEEecC-ccc-eeehH-----hHhCC-CcceEEEecCCCchHHhcCCCCE
Confidence 38999999 99999999886 3334 489999987 211 11111 11111 1111221 1 345677999999
Q ss_pred EEEcCC--CCh-hhh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016162 240 ISLHPV--LDK-TTY-HLI--NK-------ERLATMKKEAILVNCSR 273 (394)
Q Consensus 240 V~l~lP--lt~-~t~-~li--~~-------~~l~~mk~gailIN~aR 273 (394)
|+++.- ..| +++ .++ |. +.+....|.+++|+++.
T Consensus 72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 988753 333 222 122 11 23344468999999976
No 456
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=89.38 E-value=2 Score=44.27 Aligned_cols=127 Identities=10% Similarity=0.188 Sum_probs=73.1
Q ss_pred CeEEEEecChHHHH--HHHHHHh---cC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 166 QTVGVIGAGRIGSA--YARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 166 ktvGIIGlG~IG~~--vA~~la~---~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
.+|.|||.|+. .. +.+-+.+ .+ +-+|..||..+... +. +..+...+.+.......+....|.++.+..||+
T Consensus 1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl-~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADf 77 (425)
T cd05197 1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERL-DI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADF 77 (425)
T ss_pred CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 37999999985 32 2332221 34 46899999887542 11 122222222222334455667899999999999
Q ss_pred EEEcCCCCh-h----------hhhcccH----------------------HHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162 240 ISLHPVLDK-T----------TYHLINK----------------------ERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (394)
Q Consensus 240 V~l~lPlt~-~----------t~~li~~----------------------~~l~~mk~gailIN~aRG~~vde~aL~~aL 286 (394)
|+..+--.. + -+++++. +.+....|++++||.+..-=+-+.++.+..
T Consensus 78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~ 157 (425)
T cd05197 78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYV 157 (425)
T ss_pred EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhC
Confidence 988764322 1 1112111 122223589999999987666666776664
Q ss_pred HcCCcceEE
Q 016162 287 KQNPMFRVG 295 (394)
Q Consensus 287 ~~g~l~gaa 295 (394)
...++.|.+
T Consensus 158 p~~rviG~c 166 (425)
T cd05197 158 PPEKAVGLC 166 (425)
T ss_pred CCCcEEEEC
Confidence 233444444
No 457
>PRK05717 oxidoreductase; Validated
Probab=89.30 E-value=1.8 Score=40.44 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=33.0
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~ 200 (394)
.++||++.|.|. |.||+.+|+.| ...|++|+..+++..
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l-~~~g~~v~~~~~~~~ 45 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWL-IAEGWQVVLADLDRE 45 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHH-HHcCCEEEEEcCCHH
Confidence 578999999985 89999999998 467999999988754
No 458
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.27 E-value=0.72 Score=45.83 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=55.7
Q ss_pred CeEEEEec-ChHHHHHHHHHHhcC-------CcEEEEEcCchhhH-HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162 166 QTVGVIGA-GRIGSAYARMMVEGF-------KMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~~-------G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (394)
.+|+|+|. |.+|+.++..|. .. +.++..+|+..... .....- +..+.............++.+.++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~-~~~~~~~~~~~el~L~D~~~~~~~~~g~~~---Dl~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIA-KGDVFGPDQPVILHLLDIPPALKALEGVVM---ELQDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHH-hCcccCCCCCcEEEEEEcCCccccccceee---ehhhccccccCCceecCCHHHHhCC
Confidence 37999999 999999998874 32 24899999854321 111000 0000000000011113567788999
Q ss_pred cCEEEEcCCC--Ch-hhh-hcc--cH-------HHHhcC-CCCcEEEEcC
Q 016162 237 ADVISLHPVL--DK-TTY-HLI--NK-------ERLATM-KKEAILVNCS 272 (394)
Q Consensus 237 aDiV~l~lPl--t~-~t~-~li--~~-------~~l~~m-k~gailIN~a 272 (394)
||+|+++.-. .+ .++ .++ |. ..+... ++++++|.++
T Consensus 79 aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9999877432 21 121 111 21 133334 5788888876
No 459
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.27 E-value=1.6 Score=43.05 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 243 (394)
.|.+|.|.|.|.+|...++. ++..|++|++.+++..+. + . +++.|..... ...++.-...|+++.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~-~-~-------a~~~Ga~~vi----~~~~~~~~~~d~~i~~ 230 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAAR-R-L-------ALALGAASAG----GAYDTPPEPLDAAILF 230 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHH-H-H-------HHHhCCceec----cccccCcccceEEEEC
Confidence 48899999999999988887 589999999998876542 1 1 1222321110 0001111246777666
Q ss_pred CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 244 lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
... +++ -...++.++++..++.++.
T Consensus 231 ~~~-~~~----~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 231 APA-GGL----VPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CCc-HHH----HHHHHHhhCCCcEEEEEec
Confidence 542 221 2456777888888887764
No 460
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.23 E-value=2.2 Score=40.18 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=33.2
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~ 200 (394)
.++||++.|.|. |.||+.+|+.| ...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARAL-VAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 478999999986 99999999998 578999999998764
No 461
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=89.23 E-value=2.1 Score=41.92 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=57.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc-CCHHH----Hhc-cc
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDE----VLR-EA 237 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~e----ll~-~a 237 (394)
.|+++.|.|.|.+|+.+++.+ +.+|++|++.+++..... +.+.+ |......... .++.+ +.. ..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~~--~~~~~-------g~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIA-SALGARVIAVDIDDDKLE--LAREL-------GAVATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEeCCHHHHH--HHHHh-------CCCEEEccccchhHHHHHHHHhCCCC
Confidence 578999999999999999985 899999999887765421 11112 2111100010 12221 221 47
Q ss_pred CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
|+++-++.. ..+ -...+..++++..+|+++.
T Consensus 235 d~vi~~~g~-~~~----~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 235 HVSVDALGI-PET----CRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred CEEEEcCCC-HHH----HHHHHHHhhcCCEEEEeCC
Confidence 888777642 111 2345677888888888765
No 462
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=89.22 E-value=1.2 Score=43.78 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=50.9
Q ss_pred cCCCeEEEEe---cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162 163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (394)
Q Consensus 163 l~gktvGIIG---lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (394)
+.|++|+|+| +|+.-++.++.| ..||++|..+.|..-...+...+. ++..+ ..+......+|.+.++|+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~----l~~~~---~~~~~~~~~e~~i~~~DV 227 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEE----LEEKG---GVVVEHDSDEEVIEEADV 227 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHH----HhhcC---ceEEEecchhhhhccCCE
Confidence 8999999999 899999999998 799999999988654322222121 22222 122234556669999999
Q ss_pred EEEc
Q 016162 240 ISLH 243 (394)
Q Consensus 240 V~l~ 243 (394)
+.+.
T Consensus 228 l~~l 231 (316)
T COG0540 228 LYML 231 (316)
T ss_pred EEee
Confidence 9543
No 463
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.15 E-value=1.4 Score=40.74 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=33.9
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
+++|+++.|+|. |.||+.+++.+ ...|++|+..+++...
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~~ 41 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQEK 41 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 377999999998 99999999998 5779999999987643
No 464
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=89.12 E-value=1.2 Score=44.52 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=23.1
Q ss_pred eEEEEecChHHHHHHHHHHhc-C--CcEEEEEcC
Q 016162 167 TVGVIGAGRIGSAYARMMVEG-F--KMNLIYYDL 197 (394)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~-~--G~~V~~~d~ 197 (394)
+|||.|+|+||+.+.|.+... | +.++++.+.
T Consensus 3 ~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind 36 (336)
T PRK13535 3 RVAINGFGRIGRNVLRALYESGRRAEITVVAINE 36 (336)
T ss_pred EEEEECcCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 799999999999999986321 2 456665543
No 465
>PLN02740 Alcohol dehydrogenase-like
Probab=89.02 E-value=2.2 Score=42.84 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=32.5
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~ 201 (394)
-.|.+|.|+|.|.||...++.+ +.+|+ +|++.|+...+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~a-k~~G~~~Vi~~~~~~~r 235 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGA-RARGASKIIGVDINPEK 235 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCCcEEEEcCChHH
Confidence 3588999999999999999984 89999 69999887644
No 466
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.93 E-value=2.7 Score=40.78 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=58.1
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH-HHHhcccCEEEE
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVISL 242 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiV~l 242 (394)
.|.+|.|+|.|.+|+.+++.+ +.+|.+|++.+++...... .. ..+..........+. ...-...|+++-
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a-~~~G~~v~~~~~~~~~~~~--~~-------~~g~~~~~~~~~~~~~~~~~~~~d~vi~ 231 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYA-RAMGFETVAITRSPDKREL--AR-------KLGADEVVDSGAELDEQAAAGGADVILV 231 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HH-------HhCCcEEeccCCcchHHhccCCCCEEEE
Confidence 467999999999999988875 8999999999887654211 11 112111000000011 111235788887
Q ss_pred cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
++.. .. ...+.+..++++..+|+++.
T Consensus 232 ~~~~-~~----~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 232 TVVS-GA----AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred CCCc-HH----HHHHHHHhcccCCEEEEECC
Confidence 7642 11 22556778888889988864
No 467
>PRK05442 malate dehydrogenase; Provisional
Probab=88.91 E-value=0.77 Score=45.65 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=57.8
Q ss_pred CeEEEEec-ChHHHHHHHHHHh-cCCc-----EEEEEcCchhh--HHHHHHHhhhhhhhhcC-CCCccccccCCHHHHhc
Q 016162 166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~-~~G~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~ 235 (394)
.+|+|||. |.+|..+|-.+.. ++-- ++..+|..... ......+ +.+.. ..........+..+.++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~D-----l~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVME-----LDDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehh-----hhhhhhhhcCCcEEecChHHHhC
Confidence 48999998 9999999977532 2222 79999985421 1111111 11110 00000111234567799
Q ss_pred ccCEEEEcCC--CCh-hhhh-cc--cHH-------HHhc-CCCCcEEEEcCCCcccCHHH
Q 016162 236 EADVISLHPV--LDK-TTYH-LI--NKE-------RLAT-MKKEAILVNCSRGPVIDEVA 281 (394)
Q Consensus 236 ~aDiV~l~lP--lt~-~t~~-li--~~~-------~l~~-mk~gailIN~aRG~~vde~a 281 (394)
+||+|+++.- ..+ +|+- ++ |.+ .+.. .++.+++|.++ .++|.-.
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 137 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA 137 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence 9999998753 222 1221 11 111 2222 44788999887 4454444
No 468
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.86 E-value=3 Score=40.75 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=59.9
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHH--H------------HHHHhhhhhhhhcCC-CCccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRL--E------------KFVTAYGQFLKANGE-QPVTW 224 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~--~------------~~~~~~~~~~~~~~~-~~~~~ 224 (394)
..|...+|.|+|+|.+|.++|+.|+ ..|. ++..+|...-... . ...+.-.+.+.+.+. ..+..
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~ 93 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV 93 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence 4688999999999999999999985 5566 6888886642110 0 000000011122111 11111
Q ss_pred cccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 225 ~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
......++.+.+.|+|+.+.. +.+++..+|+.-.+ .+.-+|.++
T Consensus 94 ~~~~~~~~~l~~fdvVV~~~~-~~~~~~~in~~c~~---~~ipfI~a~ 137 (286)
T cd01491 94 STGPLTTDELLKFQVVVLTDA-SLEDQLKINEFCHS---PGIKFISAD 137 (286)
T ss_pred EeccCCHHHHhcCCEEEEecC-CHHHHHHHHHHHHH---cCCEEEEEe
Confidence 111113567889998887764 56666666654332 344555554
No 469
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.85 E-value=3.3 Score=41.14 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=32.0
Q ss_pred CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.|.+|.|.|. |.+|...++. ++.+|++|++.+++..+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiql-Ak~~G~~Vi~~~~~~~k 195 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQL-AKLHGCYVVGSAGSSQK 195 (348)
T ss_pred CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEcCCHHH
Confidence 5889999999 9999999998 48999999998876644
No 470
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=88.80 E-value=2.1 Score=42.80 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=23.8
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEc
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d 196 (394)
.+|||.|+|+||+.+.+.+...-++++.+..
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivain 33 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQIN 33 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEec
Confidence 4899999999999999986333457765544
No 471
>PRK06196 oxidoreductase; Provisional
Probab=88.74 E-value=1.9 Score=42.03 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=33.6
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.+.||++.|.|. |.||+.+|+.| ...|++|++.+|+...
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L-~~~G~~Vv~~~R~~~~ 62 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRAL-AQAGAHVIVPARRPDV 62 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 578999999987 88999999998 5779999999987654
No 472
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=88.71 E-value=1.7 Score=44.31 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=24.4
Q ss_pred CeEEEEecChHHHHHHHHHHh-cC-CcEEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVE-GF-KMNLIYYDL 197 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~-~~-G~~V~~~d~ 197 (394)
.+|||.|+|+||+.+.|.+.. .+ ..+|.+.+.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd 94 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIND 94 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 489999999999999998632 22 457776553
No 473
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.71 E-value=2.4 Score=42.21 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=32.3
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~ 201 (394)
.|.+|.|.|.|.+|...++.+ +.+|+ +|++.++....
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~a-k~~G~~~vi~~~~~~~~ 224 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGA-RIRGASRIIGVDLNPSK 224 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence 588999999999999999984 89999 79999887654
No 474
>PRK07825 short chain dehydrogenase; Provisional
Probab=88.64 E-value=1.9 Score=40.81 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=33.0
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
++.|+++.|.|. |.||+.+++.| ...|++|++.+|+...
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l-~~~G~~v~~~~r~~~~ 41 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARAL-AALGARVAIGDLDEAL 41 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence 467899999986 89999999998 4779999999987644
No 475
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=88.63 E-value=1.9 Score=43.17 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=25.0
Q ss_pred CeEEEEecChHHHHHHHHHHhcCCcEEEEEcC
Q 016162 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197 (394)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~ 197 (394)
.+|||=|||+||+.+.|.+...-+.+|.+.+.
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd 34 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINA 34 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecC
Confidence 38999999999999999853233578887754
No 476
>PRK08628 short chain dehydrogenase; Provisional
Probab=88.51 E-value=0.96 Score=42.33 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=33.6
Q ss_pred cccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 161 ~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.++.|+++.|+| .|.||+.+|+.| ...|++|++.++....
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l-~~~G~~v~~~~r~~~~ 43 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRL-AEEGAIPVIFGRSAPD 43 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHH-HHcCCcEEEEcCChhh
Confidence 358899999998 578999999998 5789999988887644
No 477
>PRK12828 short chain dehydrogenase; Provisional
Probab=88.45 E-value=3.3 Score=37.78 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=33.3
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.+.||++.|+|- |.||+.+++.++ .-|++|++.+|+..+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~-~~G~~v~~~~r~~~~ 43 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA-ARGARVALIGRGAAP 43 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH-HCCCeEEEEeCChHh
Confidence 477999999985 999999999984 669999999997654
No 478
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.45 E-value=2.3 Score=43.22 Aligned_cols=94 Identities=19% Similarity=0.373 Sum_probs=64.9
Q ss_pred cccccCCCeEEEEec---ChH-------HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccC
Q 016162 159 VGNLLKGQTVGVIGA---GRI-------GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (394)
Q Consensus 159 ~g~~l~gktvGIIGl---G~I-------G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (394)
.++.+.|.+|.|+|+ |++ .-.+.+.+ ...|.+|.+|||+......++ . + ... ...
T Consensus 316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l-~~~g~~v~~~DP~v~~~~~~~-~---------~---~~~-~~~ 380 (436)
T COG0677 316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELL-EEWGGEVLVYDPYVKELPTRE-D---------G---EGV-TLA 380 (436)
T ss_pred cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHH-HHhCCeEEEECCCCCcchhhh-h---------c---ccc-chh
Confidence 356789999999998 333 34677777 688999999999986522110 0 0 001 135
Q ss_pred CHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162 229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (394)
Q Consensus 229 ~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~ 271 (394)
++++.+..+|+|++.+- .+...-++.+.+..+ ..+++|+
T Consensus 381 ~~e~al~~~D~vVi~tD--H~~fk~id~~~i~~~--~~vivDt 419 (436)
T COG0677 381 ILEEALKDADAVVIATD--HSEFKEIDYEAIGKE--AKVIVDT 419 (436)
T ss_pred hHHHHhccCCEEEEEec--cHHhhcCCHHHhccC--CcEEEEC
Confidence 78999999999999874 233335777777655 6677775
No 479
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=88.37 E-value=8.6 Score=41.09 Aligned_cols=201 Identities=18% Similarity=0.158 Sum_probs=122.7
Q ss_pred hCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (394)
Q Consensus 107 ~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~ 186 (394)
+..|.+.|+-- .-+|-.+++-+|+.+|- .|..|.+.++.|+|.|..|-.+|+.+..
T Consensus 287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgigia~ll~~ 342 (581)
T PLN03129 287 RTTHLCFNDDI---QGTAAVALAGLLAALRA---------------------TGGDLADQRILFAGAGEAGTGIAELIAL 342 (581)
T ss_pred ccCCCEecccc---chHHHHHHHHHHHHHHH---------------------hCCchhhceEEEECCCHHHHHHHHHHHH
Confidence 34677777654 34577788888887772 2457899999999999999999998743
Q ss_pred c----CCc-------EEEEEcCchhh-----H-HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEEEcCCCC
Q 016162 187 G----FKM-------NLIYYDLYQAT-----R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLD 247 (394)
Q Consensus 187 ~----~G~-------~V~~~d~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~lPlt 247 (394)
. .|. +++.+|+..-- . +..+...|.. .. ....+|.|+++. .|+++=+--
T Consensus 343 ~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~---~~-------~~~~~L~e~v~~vkptvLIG~S~-- 410 (581)
T PLN03129 343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAH---DH-------EPGASLLEAVKAIKPTVLIGLSG-- 410 (581)
T ss_pred HHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHh---hc-------ccCCCHHHHHhccCCCEEEEecC--
Confidence 2 366 78888865311 1 2233333321 10 123589999999 899875431
Q ss_pred hhhhhcccHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHcCCcceEEeeccCCCCCC-C---CccccCCceEE
Q 016162 248 KTTYHLINKERLATMK---KEAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIV 317 (394)
Q Consensus 248 ~~t~~li~~~~l~~mk---~gailIN~aRG~~---vde~aL~~aL~~g~l~gaalDV~~~EP~~-~---~~L~~~~nvil 317 (394)
.-+.|.++.++.|. +..+|.=.|.... ...++.+++ .+|+...|.=--| .|.. + ...-+..|+++
T Consensus 411 --~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~AtGSPf--~pv~~~Gr~~~p~Q~NN~~i 485 (581)
T PLN03129 411 --VGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFASGSPF--DPVEYNGKTFHPGQANNAYI 485 (581)
T ss_pred --CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEEeCCCC--CCeeeCCeeecCccccceee
Confidence 13789999999995 8899998887542 233333333 3355333321111 1110 0 11234579999
Q ss_pred cCCCCCCcH-----HHHHHHHHHHHHHHHHHHcCCC
Q 016162 318 VPHIASASK-----WTREGMATLAALNVLGKIKGYP 348 (394)
Q Consensus 318 TPHia~~t~-----~~~~~~~~~~~~ni~~~l~g~~ 348 (394)
-|-|+-... .--+.|...+++.+-.+..-+.
T Consensus 486 FPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~~~ 521 (581)
T PLN03129 486 FPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEE 521 (581)
T ss_pred ccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCccc
Confidence 998875322 1225566666777766554433
No 480
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.35 E-value=3.4 Score=40.51 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=31.8
Q ss_pred CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.|.+|.|.|. |.+|+.+++. ++.+|++|++.+++..+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiql-Ak~~G~~Vi~~~~~~~~ 188 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQL-AKLKGCYVVGSAGSDEK 188 (338)
T ss_pred CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEeCCHHH
Confidence 5789999998 9999999998 48999999988876544
No 481
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=88.24 E-value=0.99 Score=43.23 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (394)
Q Consensus 177 G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~ 256 (394)
|..+|-.+| ..|.+|+..||+..-..++. ++...++|. ....+=.+..+.+.+.++.+|....|-++. .
T Consensus 33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~----w~~vedAGV-----~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-r 101 (340)
T COG4007 33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEH----WKRVEDAGV-----EVVSDDAEAAEHGEIHVLFTPFGKATFGIA-R 101 (340)
T ss_pred chHHHHHHH-HcCCcEEeecCCccccCHHH----HHHHHhcCc-----EEecCchhhhhcceEEEEecccchhhHHHH-H
Confidence 677887764 66999999999876533332 223344443 223344577899999999999988887765 7
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce--EEeeccCCCCC
Q 016162 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR--VGLDVFEDEPY 304 (394)
Q Consensus 257 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~g--aalDV~~~EP~ 304 (394)
+.+..++.|+++.|+++-+. -.|+.-|+ |.++- -.+-|.+-.|.
T Consensus 102 ei~~hvpEgAVicnTCT~sp---~vLy~~LE-~~Lr~kR~dVGvssmHPA 147 (340)
T COG4007 102 EILEHVPEGAVICNTCTVSP---VVLYYSLE-GELRTKREDVGVSSMHPA 147 (340)
T ss_pred HHHhhCcCCcEecccccCch---hHHHHHhh-hhhcCchhhcCccccCCC
Confidence 88999999999999998655 45777764 33332 23334556664
No 482
>PRK08862 short chain dehydrogenase; Provisional
Probab=88.21 E-value=1.9 Score=40.04 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=33.4
Q ss_pred ccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
+++||++.|.|.+. ||+++|+.| ...|++|+..+|+...
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~l-a~~G~~V~~~~r~~~~ 41 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHF-ARLGATLILCDQDQSA 41 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence 47899999998776 999999998 5789999999987654
No 483
>PRK08328 hypothetical protein; Provisional
Probab=88.20 E-value=0.64 Score=43.80 Aligned_cols=107 Identities=23% Similarity=0.234 Sum_probs=61.2
Q ss_pred cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HH-HH-----------HHhh-hhhhhhcCCCCccc
Q 016162 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KF-----------VTAY-GQFLKANGEQPVTW 224 (394)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~-~~-----------~~~~-~~~~~~~~~~~~~~ 224 (394)
..|++++|.|+|.|.+|.++|+.|+ ..|. +++.+|...-.. +- ++ +.+. ...+++.+. .+..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np-~v~v 100 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS-DIKI 100 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC-CCEE
Confidence 4689999999999999999999985 5666 688888553210 00 00 0000 000111110 0111
Q ss_pred c------ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162 225 K------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (394)
Q Consensus 225 ~------~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 273 (394)
. ...+++++++.+|+|+.|+- +.+++.++++--. +.+.-+|+.+-
T Consensus 101 ~~~~~~~~~~~~~~~l~~~D~Vid~~d-~~~~r~~l~~~~~---~~~ip~i~g~~ 151 (231)
T PRK08328 101 ETFVGRLSEENIDEVLKGVDVIVDCLD-NFETRYLLDDYAH---KKGIPLVHGAV 151 (231)
T ss_pred EEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHH---HcCCCEEEEee
Confidence 0 11245677889999998886 4677777764332 23445666543
No 484
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=88.16 E-value=3 Score=39.79 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=31.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~ 201 (394)
.|.++.|.|.|.+|+.+++.+ +..|++ |++.++....
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la-~~~g~~~v~~~~~~~~~ 166 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLA-AAAGARRVIAIDRRPAR 166 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHH
Confidence 578999999999999999984 899999 8888776543
No 485
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=87.89 E-value=3.9 Score=41.67 Aligned_cols=112 Identities=16% Similarity=0.067 Sum_probs=57.7
Q ss_pred CeEEEEec-ChHHHHHHHHHHh-c-CCc----EEEEE--cCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162 166 QTVGVIGA-GRIGSAYARMMVE-G-FKM----NLIYY--DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (394)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~-~-~G~----~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (394)
.+|+|||. |++|..+|-.++. + ++. .++.+ |...........+-. + .............+-.+.+++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~-d---~a~~~~~~v~i~~~~y~~~kd 120 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELE-D---SLYPLLREVSIGIDPYEVFED 120 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHH-H---hhhhhcCceEEecCCHHHhCC
Confidence 58999999 9999999987643 2 231 34444 766554332222211 1 000000011111233577999
Q ss_pred cCEEEEcCC--CChh-hhh--------ccc--HHHHhc-CCCCcEEEEcCCCcccCHHHHH
Q 016162 237 ADVISLHPV--LDKT-TYH--------LIN--KERLAT-MKKEAILVNCSRGPVIDEVALV 283 (394)
Q Consensus 237 aDiV~l~lP--lt~~-t~~--------li~--~~~l~~-mk~gailIN~aRG~~vde~aL~ 283 (394)
||+|+++.- ..+. ++. ++. ...+.. -+|++++|.++ .++|.-..+
T Consensus 121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v 179 (387)
T TIGR01757 121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALI 179 (387)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHH
Confidence 999998743 2221 221 111 112222 45888888876 445444433
No 486
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=87.89 E-value=2.8 Score=47.81 Aligned_cols=94 Identities=24% Similarity=0.347 Sum_probs=61.1
Q ss_pred CCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh-----------HHH-HHHHhhhhhhhhcCC
Q 016162 152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-----------RLE-KFVTAYGQFLKANGE 219 (394)
Q Consensus 152 ~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~-----------~~~-~~~~~~~~~~~~~~~ 219 (394)
+|....+. ..=.|++|+|||-|.-|-..|..| -..|..|++|.|.... .+. ..++.-.+.+...|.
T Consensus 1773 gwm~p~pp-~~rtg~~vaiigsgpaglaaadql-nk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi 1850 (2142)
T KOG0399|consen 1773 GWMKPCPP-AFRTGKRVAIIGSGPAGLAAADQL-NKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGI 1850 (2142)
T ss_pred cCCccCCc-ccccCcEEEEEccCchhhhHHHHH-hhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCc
Confidence 48755433 345799999999999999999997 6889999999876431 011 111111222333342
Q ss_pred CCc---cccccCCHHHHhcccCEEEEcCCCC
Q 016162 220 QPV---TWKRASSMDEVLREADVISLHPVLD 247 (394)
Q Consensus 220 ~~~---~~~~~~~l~ell~~aDiV~l~lPlt 247 (394)
.-+ ......+++++...-|.|++++-.|
T Consensus 1851 ~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1851 RFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred eEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence 110 1112468999999999999987654
No 487
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=87.84 E-value=3.4 Score=41.17 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=32.4
Q ss_pred cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (394)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~ 201 (394)
-.|.+|.|+|.|.+|...++. ++.+|+ +|++.++...+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~-a~~~G~~~Vi~~~~~~~~ 221 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMG-AKIAGASRIIGVDINEDK 221 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence 358899999999999999997 589999 79999887654
No 488
>PRK08589 short chain dehydrogenase; Validated
Probab=87.80 E-value=2.4 Score=40.27 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=31.9
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~ 198 (394)
.+.||++.|.|. |.||+++|+.| ...|++|++.+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l-~~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIAL-AQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCc
Confidence 478999999987 88999999998 4779999999987
No 489
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=87.77 E-value=3.1 Score=38.33 Aligned_cols=39 Identities=28% Similarity=0.282 Sum_probs=33.5
Q ss_pred ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
.+.++++.|.| .|.+|+.+++.| ...|++|++.+|+...
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l-~~~g~~V~~~~r~~~~ 42 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRL-AADGAEVIVVDICGDD 42 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 46789999998 799999999998 5679999999988643
No 490
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.76 E-value=2.8 Score=41.86 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=32.1
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~ 201 (394)
.|.+|.|.|.|.||...++. ++.+|. +|++.+++..+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~-Ak~~G~~~Vi~~~~~~~~ 222 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQG-ARMAKASRIIAIDINPAK 222 (368)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence 47899999999999999998 489999 79999887654
No 491
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=87.75 E-value=1.2 Score=43.71 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=54.7
Q ss_pred EEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-C--CCccccccCCHHHHhcccCEEEEcCC
Q 016162 170 VIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-E--QPVTWKRASSMDEVLREADVISLHPV 245 (394)
Q Consensus 170 IIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~ell~~aDiV~l~lP 245 (394)
|||.|.+|..+|..++. .+.-++..+|...........+ +.+.. . ...... .+-.+.+++||+|+++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D-----l~~~~~~~~~~~~i~--~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD-----LQHAASFLPTPKKIR--SGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH-----HHHhhcccCCCeEEe--cCCHHHHCCCCEEEECCC
Confidence 69999999999987632 3444899999866432222222 11111 0 111111 133467999999998753
Q ss_pred C--Chh-hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016162 246 L--DKT-TY--------HLIN--KERLATMKKEAILVNCSR 273 (394)
Q Consensus 246 l--t~~-t~--------~li~--~~~l~~mk~gailIN~aR 273 (394)
. .|. ++ .++. .+.+....|.+++|+++.
T Consensus 74 ~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 74 APQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 2 221 22 1121 123444578899999863
No 492
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=87.73 E-value=0.92 Score=43.38 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=44.9
Q ss_pred eEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh------cc-cC
Q 016162 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE-AD 238 (394)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~-aD 238 (394)
+|.|+|. |.+|+.+++.| ..-|.+|.+..|++...... ........+....++.+.+ .. +|
T Consensus 1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~~~~~----------~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d 69 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSSSAGP----------NEKHVKFDWLDEDTWDNPFSSDDGMEPEIS 69 (285)
T ss_pred CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCccccCC----------CCccccccCCCHHHHHHHHhcccCcCCcee
Confidence 4678876 99999999998 56799999999886532100 0000111122234556666 45 89
Q ss_pred EEEEcCCCCh
Q 016162 239 VISLHPVLDK 248 (394)
Q Consensus 239 iV~l~lPlt~ 248 (394)
.|+++.|..+
T Consensus 70 ~v~~~~~~~~ 79 (285)
T TIGR03649 70 AVYLVAPPIP 79 (285)
T ss_pred EEEEeCCCCC
Confidence 9998887543
No 493
>PRK06194 hypothetical protein; Provisional
Probab=87.69 E-value=1.6 Score=41.49 Aligned_cols=39 Identities=28% Similarity=0.443 Sum_probs=32.7
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
++.++++.|.|. |.||+.+|+.| ...|++|++.|++...
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l-~~~G~~V~~~~r~~~~ 42 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIG-AALGMKLVLADVQQDA 42 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHH-HHCCCEEEEEeCChHH
Confidence 467899999985 89999999998 5779999999987543
No 494
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.68 E-value=2.8 Score=39.51 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=32.0
Q ss_pred ccCCCeEEEEecC---hHHHHHHHHHHhcCCcEEEEEcCch
Q 016162 162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ 199 (394)
Q Consensus 162 ~l~gktvGIIGlG---~IG~~vA~~la~~~G~~V~~~d~~~ 199 (394)
.+.||++.|.|.+ .||+++|+.++ ..|++|+..+++.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la-~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFR-ALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCh
Confidence 5789999999986 69999999984 7799999888764
No 495
>PRK12747 short chain dehydrogenase; Provisional
Probab=87.66 E-value=2.8 Score=39.08 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=28.2
Q ss_pred cCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcC
Q 016162 163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL 197 (394)
Q Consensus 163 l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~ 197 (394)
+.||++.|.| .|.||+.+|+.| ...|++|++.++
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l-~~~G~~v~~~~~ 36 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYG 36 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcC
Confidence 4688999997 679999999998 578999988653
No 496
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=87.65 E-value=1.3 Score=45.39 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=34.1
Q ss_pred cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (394)
Q Consensus 161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~ 201 (394)
..++||++.|.|. |.||+++|+.+ ...|++|++.+++...
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~L-a~~G~~Vi~l~r~~~~ 214 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKEL-HQQGAKVVALTSNSDK 214 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 3578999999987 89999999998 5779999999987643
No 497
>PRK06841 short chain dehydrogenase; Provisional
Probab=87.64 E-value=2.9 Score=38.93 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=33.4
Q ss_pred ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (394)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~ 200 (394)
++.|+++.|.|. |.||+.+|+.| ...|++|++.+|+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l-~~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELF-AAKGARVALLDRSED 50 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 578999999995 99999999998 578999999998764
No 498
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=87.61 E-value=1.4 Score=44.88 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=49.8
Q ss_pred cCCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH
Q 016162 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (394)
Q Consensus 163 l~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 232 (394)
.+|++|+|+|+. .-...+++.| ...|.+|.+|||..... . . .+.....++++
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~-~--------------~--~~~~~~~~~~~ 355 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKED-S--------------F--FNSRLERDLAT 355 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCch-h--------------h--cCCeeeCCHHH
Confidence 478999999993 5677899997 78999999999985331 1 0 11234578999
Q ss_pred HhcccCEEEEcCC
Q 016162 233 VLREADVISLHPV 245 (394)
Q Consensus 233 ll~~aDiV~l~lP 245 (394)
.+..||.|++..-
T Consensus 356 ~~~~~~~~~~~~~ 368 (388)
T PRK15057 356 FKQQADVIISNRM 368 (388)
T ss_pred HHHhCCEEEEcCC
Confidence 9999999998764
No 499
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.58 E-value=4.4 Score=39.84 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=31.3
Q ss_pred CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhh
Q 016162 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (394)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~ 201 (394)
.|++|.|.|.|.+|...++.+ +..|.+ |++.+++..+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a-~~~G~~~v~~~~~~~~~ 197 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDINSEK 197 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHH
Confidence 478999999999999999984 899997 6788876654
No 500
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=87.57 E-value=2.6 Score=42.17 Aligned_cols=99 Identities=10% Similarity=0.148 Sum_probs=51.3
Q ss_pred CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhh---hcC-CCCccccccCCHHHHhcccCEE
Q 016162 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANG-EQPVTWKRASSMDEVLREADVI 240 (394)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~ell~~aDiV 240 (394)
.+|+|+| .|.+|+++.+.|..--.+++.++..+....-....+.+. +.. ..+ .....+. ..+.++ +.++|+|
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~-~~~~~~~~~~~~~~~v~-~~~~~~-~~~~DvV 80 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVR-WQLDGPIPEEVADMEVV-STDPEA-VDDVDIV 80 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCccccccc-ccccccccccccceEEE-eCCHHH-hcCCCEE
Confidence 5899998 999999999998433355888774333221100000000 000 000 0011111 124544 4789999
Q ss_pred EEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (394)
Q Consensus 241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 272 (394)
+.++|.... ..+. +.+ .+.|..+|+.+
T Consensus 81 f~a~p~~~s-~~~~--~~~--~~~G~~vIDls 107 (349)
T PRK08664 81 FSALPSDVA-GEVE--EEF--AKAGKPVFSNA 107 (349)
T ss_pred EEeCChhHH-HHHH--HHH--HHCCCEEEECC
Confidence 999995422 2222 112 13577777765
Done!