Query 016163
Match_columns 394
No_of_seqs 323 out of 1705
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:58:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 1.1E-46 3.7E-51 368.5 22.8 231 72-308 32-269 (306)
2 2cch_B Cyclin A2, cyclin-A; co 100.0 6.9E-45 2.4E-49 347.8 23.1 244 76-331 5-253 (260)
3 1f5q_B Gamma herpesvirus cycli 100.0 8.9E-46 3.1E-50 352.6 15.8 234 64-307 9-243 (252)
4 1g3n_C V-cyclin; cyclin-depend 100.0 8.8E-45 3E-49 346.5 21.7 230 72-308 13-250 (257)
5 2f2c_A Cyclin homolog, V-cycli 100.0 3.8E-44 1.3E-48 341.5 23.5 227 72-306 14-248 (254)
6 2b9r_A Human cyclin B1; cell c 100.0 4.6E-44 1.6E-48 343.8 17.6 243 77-331 6-252 (269)
7 2w96_A G1/S-specific cyclin-D1 100.0 8.4E-43 2.9E-47 335.2 20.5 231 72-309 19-260 (271)
8 1w98_B Cyclin E, G1/S-specific 100.0 4.4E-41 1.5E-45 325.4 24.9 219 73-307 11-243 (283)
9 2i53_A Cyclin K; cell cycle, t 100.0 2.2E-34 7.4E-39 274.2 18.4 200 103-307 36-252 (258)
10 3rgf_B Cyclin-C; protein kinas 100.0 7.7E-34 2.6E-38 274.9 21.2 208 103-322 38-262 (285)
11 2ivx_A Cyclin-T2; transcriptio 100.0 2E-33 6.9E-38 267.6 22.2 196 103-308 26-242 (257)
12 1zp2_A RNA polymerase II holoe 100.0 2.5E-32 8.6E-37 257.0 17.4 188 108-307 28-221 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 2.5E-32 8.4E-37 272.2 14.4 195 103-307 33-248 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 6E-30 2E-34 251.7 20.3 196 105-307 54-262 (323)
15 1c9b_A General transcription f 99.9 1.5E-25 5.3E-30 206.5 19.4 186 107-307 4-190 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 2.3E-21 7.9E-26 177.5 19.4 185 106-305 7-194 (200)
17 3k7a_M Transcription initiatio 99.7 6.7E-18 2.3E-22 167.3 7.0 183 108-305 126-321 (345)
18 4bbr_M Transcription initiatio 99.3 3E-12 1E-16 126.7 8.0 184 108-306 126-322 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.1 1.5E-05 5.2E-10 76.3 10.7 107 111-222 77-184 (293)
20 1ais_B TFB TFIIB, protein (tra 95.8 0.05 1.7E-06 48.6 10.1 88 211-305 11-98 (200)
21 1c9b_A General transcription f 95.1 0.12 4.2E-06 46.3 10.1 87 212-305 8-94 (207)
22 4bbr_M Transcription initiatio 91.1 0.77 2.6E-05 44.8 9.2 87 212-305 129-215 (345)
23 1zp2_A RNA polymerase II holoe 88.5 2.9 9.8E-05 38.0 10.4 86 213-305 32-126 (235)
24 3k7a_M Transcription initiatio 87.6 0.3 1E-05 47.6 3.2 86 213-305 130-215 (345)
25 2i53_A Cyclin K; cell cycle, t 84.3 4.2 0.00015 37.2 9.2 87 113-204 153-250 (258)
26 3h4c_A Transcription factor TF 82.1 22 0.00075 32.1 12.3 149 110-269 14-170 (260)
27 2ivx_A Cyclin-T2; transcriptio 79.0 11 0.00037 34.4 10.0 86 113-203 148-238 (257)
28 3rgf_B Cyclin-C; protein kinas 76.4 17 0.00057 34.0 10.6 85 214-304 48-148 (285)
29 2b9r_A Human cyclin B1; cell c 76.0 16 0.00055 33.7 10.2 85 214-304 43-129 (269)
30 2w96_A G1/S-specific cyclin-D1 75.6 24 0.00082 32.5 11.4 68 236-305 80-149 (271)
31 1jkw_A Cyclin H; cell cycle, c 73.1 23 0.0008 33.7 10.8 82 215-303 63-153 (323)
32 2f2c_A Cyclin homolog, V-cycli 71.7 26 0.0009 31.8 10.5 86 214-305 57-144 (254)
33 2pk2_A Cyclin-T1, protein TAT; 71.4 9.3 0.00032 37.1 7.6 85 114-203 156-245 (358)
34 2cch_B Cyclin A2, cyclin-A; co 70.3 17 0.00057 33.3 8.8 66 237-304 63-130 (260)
35 3g33_B CCND3 protein; Ser/Thr 68.2 30 0.001 32.7 10.3 64 239-304 97-162 (306)
36 1g3n_C V-cyclin; cyclin-depend 67.0 23 0.00079 32.3 9.0 71 233-305 71-143 (257)
37 1w98_B Cyclin E, G1/S-specific 59.2 59 0.002 30.1 10.4 69 235-305 72-143 (283)
38 1f5q_B Gamma herpesvirus cycli 34.8 2.4E+02 0.0083 25.5 10.2 64 239-304 75-140 (252)
39 3m03_A ORC6, origin recognitio 33.0 1.1E+02 0.0037 23.9 6.3 76 115-199 6-87 (95)
40 2pmi_B PHO85 cyclin PHO80, ami 27.9 2.9E+02 0.01 25.9 9.5 88 210-303 75-165 (293)
41 3m03_A ORC6, origin recognitio 25.3 1.6E+02 0.0055 23.0 6.0 51 252-305 42-92 (95)
42 1unl_D Cyclin-dependent kinase 22.5 3.9E+02 0.013 23.3 8.6 102 109-221 73-189 (208)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-46 Score=368.53 Aligned_cols=231 Identities=26% Similarity=0.358 Sum_probs=200.3
Q ss_pred CCCCCCcHHHHHHHHHhhccCC----ccccCCCCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccC
Q 016163 72 EQDLSWQDDELSTLLSKEVPNR----LYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQR 147 (394)
Q Consensus 72 ~~d~~~~de~l~~Ll~kE~~~~----~~~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~ 147 (394)
+++++|+++++++|+++|.++. ++...|.+ +++.+|.++|+||.+|+.+|+++++|+++||+|||||+++..+.+
T Consensus 32 dp~l~~~~~i~~~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~ 110 (306)
T 3g33_B 32 DPRLLGDQRVLQSLLRLEERYVPRASYFQCVQRE-IKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRK 110 (306)
T ss_dssp -----CHHHHHHHHHHHGGGGSCSSCCTTTSTTT-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCG
T ss_pred CCcccchHHHHHHHHHHHHHhCCCcHHHhhcCcc-CCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcH
Confidence 6888999999999999999976 45556766 999999999999999999999999999999999999999999876
Q ss_pred CcchhHHHHHHHHHHhhhcccccCCCccchh-hcccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCC
Q 016163 148 DKPWMAQLAAVACLSLAAKVEETQVPLLLDL-QVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLK 226 (394)
Q Consensus 148 ~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~ 226 (394)
.+ +||+|+|||+||+|+||+.+|.+.++ .++++. |++++|++||+.||++|+|++++|||++||.+|++.++..
T Consensus 111 ~~---lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~--~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~ 185 (306)
T 3g33_B 111 AQ---LQLLGAVCMLLASKLRETTPLTIEKLCIYTDHA--VSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLP 185 (306)
T ss_dssp GG---HHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTS--SCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCC
T ss_pred HH---HHHHHHHHHHHHHHhccCCCCCHHHHHHHhccC--ccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCC
Confidence 66 99999999999999999999999998 455554 5899999999999999999999999999999999999876
Q ss_pred CcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhcccc-C-cchhhhhHhHcCCCHHHHHHHHHHHHHHH
Q 016163 227 GYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSL-G-VEYEKQLLNILGTDKDKVEHCSKLIMQLA 304 (394)
Q Consensus 227 ~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~-~-~~~~~~L~~~~~~~~~~l~~C~~~l~~l~ 304 (394)
......+...+.++++.++.++.|+.|+||+||||||++|+..++... + ..|...|..++|+++++|.+|++.|.+++
T Consensus 186 ~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~ 265 (306)
T 3g33_B 186 RDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAAL 265 (306)
T ss_dssp TTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 554433446688999999999999999999999999999999887432 1 34678888999999999999999999999
Q ss_pred Hhhc
Q 016163 305 EQVQ 308 (394)
Q Consensus 305 ~~~~ 308 (394)
.+..
T Consensus 266 ~~~l 269 (306)
T 3g33_B 266 RESL 269 (306)
T ss_dssp HTC-
T ss_pred HHHH
Confidence 8753
No 2
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=6.9e-45 Score=347.78 Aligned_cols=244 Identities=25% Similarity=0.339 Sum_probs=217.7
Q ss_pred CCcHHHHHHHHHhhccCC---ccccCCCCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchh
Q 016163 76 SWQDDELSTLLSKEVPNR---LYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWM 152 (394)
Q Consensus 76 ~~~de~l~~Ll~kE~~~~---~~~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~ 152 (394)
.|.+|++.+|+++|.++. .+...|.+ ++..+|..+|+||.+|+.+|+++++|+++||+|+|||+++.++++.+
T Consensus 5 eY~~di~~~l~~~E~~~~p~~~y~~~q~~-i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~--- 80 (260)
T 2cch_B 5 DYHEDIHTYLREMEVKCKPKVGYMKKQPD-ITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK--- 80 (260)
T ss_dssp TTHHHHHHHHHHHHHHTCCCTTGGGGCSS-CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHH---
T ss_pred hHHHHHHHHHHHHHhhcCCCchhhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHH---
Confidence 389999999999998875 23333555 99999999999999999999999999999999999999999998777
Q ss_pred HHHHHHHHHHhhhcccccCCCccchhh-cccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCCCcccH
Q 016163 153 AQLAAVACLSLAAKVEETQVPLLLDLQ-VEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCW 231 (394)
Q Consensus 153 lqLvavaCL~LAaK~EE~~~p~l~dl~-v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~~~~~~ 231 (394)
+||+|+|||+||||+||+.+|.+.++. ++++. |++++|.+||+.||++|+|++++|||++|+.+|++.++.++.
T Consensus 81 lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~--~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~--- 155 (260)
T 2cch_B 81 LQLVGTAAMLLASKFEEIYPPEVAEFVYITDDT--YTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC--- 155 (260)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSS--SCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCH---
T ss_pred HhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCC--cCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChH---
Confidence 999999999999999999999999994 66554 589999999999999999999999999999999999886542
Q ss_pred HHHHHHHHHHHHhhchhc-ccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHHHHHHHHHHHHHHHHhhccC
Q 016163 232 EFLKRCDRILLSAISDSS-FMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQGQ 310 (394)
Q Consensus 232 ~~l~~a~~ll~~sl~d~~-~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~~~~~ 310 (394)
.+...|+++++.++.++. |++|+||.||+|||++|+..++. ..|...+..++|+++++|.+|++.|.+++.+....
T Consensus 156 ~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~---~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~ 232 (260)
T 2cch_B 156 KVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG---QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQH 232 (260)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS---CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC---CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCc
Confidence 355678899999999999 99999999999999999998873 56999999999999999999999999999887766
Q ss_pred CchhhhhcccCCCCCCCCCCC
Q 016163 311 GSQSIKRKFGSITVPVVPGSP 331 (394)
Q Consensus 311 ~~~~~~~ky~s~~~~~~p~sP 331 (394)
+.+++++||++..+..|+..|
T Consensus 233 ~~~~i~~Ky~~~~~~~vs~~~ 253 (260)
T 2cch_B 233 AQQSIREKYKNSKYHGVSLLN 253 (260)
T ss_dssp SCCHHHHHHTSGGGTTGGGSC
T ss_pred chHHHHHHHCcccccceeCCC
Confidence 789999999988777666544
No 3
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=8.9e-46 Score=352.59 Aligned_cols=234 Identities=16% Similarity=0.154 Sum_probs=199.0
Q ss_pred CCCCCcccCCCCCCcHHHHHHHHHhhccCCccccCCCCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccc
Q 016163 64 PVPVPMLHEQDLSWQDDELSTLLSKEVPNRLYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSF 143 (394)
Q Consensus 64 ~~~~~~l~~~d~~~~de~l~~Ll~kE~~~~~~~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~ 143 (394)
+.+.... +++++ .|+++.+|+++|.++.+ ...|.+ +++.+|.++|+||.+|+.+|+++++|+++||+|+||||++.
T Consensus 9 ~~~~~~~-dp~l~-~d~i~~~l~~~E~~~~p-~~~q~~-i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~ 84 (252)
T 1f5q_B 9 FLDSSLL-NEEDC-RQMIYRSEREHDARMVG-VNVDQH-FTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLST 84 (252)
T ss_dssp SCSCTTC-CHHHH-HHHHHHHHHHHHHHHSS-SSHHHH-HHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHS
T ss_pred CCCcCcC-CHHHh-HHHHHHHHHHHHHHhCc-CccCCC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCC
Confidence 3344455 67765 77999999999998765 333444 78899999999999999999999999999999999999999
Q ss_pred cccCCcchhHHHHHHHHHHhhhcccccCCCccchh-hcccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHH
Q 016163 144 QLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDL-QVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARR 222 (394)
Q Consensus 144 ~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~ 222 (394)
.+++.+ +||+|+|||+||+|+||+.+|.+.++ .++++ .|++++|++||+.||++|+|++++|||++|+.+|++.
T Consensus 85 ~v~~~~---lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~--~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~ 159 (252)
T 1f5q_B 85 RIDREN---YQSTAAVALHIAGKVRAYMPIKATQLAYLCGG--ATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHI 159 (252)
T ss_dssp CCCGGG---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCT--TCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred CcCHHH---HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCC--CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHH
Confidence 998777 99999999999999999999999998 45554 4599999999999999999999999999999999999
Q ss_pred cCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHHHHHHHHHHHHH
Q 016163 223 LGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQ 302 (394)
Q Consensus 223 l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~ 302 (394)
++.+......+...|.++++.++.|+.|+.|+||+|||||+.+++....+ ....|...|.+++|++++++.+|++.|.+
T Consensus 160 ~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~-~~~~~~~~L~~~t~~~~~~l~~C~~~i~~ 238 (252)
T 1f5q_B 160 MHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYD-YYENRIDGVCKSLYITKEELHQCCDLVDI 238 (252)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCC-chhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 98765443345667889999999999999999999999997666532211 12235778889999999999999999999
Q ss_pred HHHhh
Q 016163 303 LAEQV 307 (394)
Q Consensus 303 l~~~~ 307 (394)
++.+-
T Consensus 239 ~l~~~ 243 (252)
T 1f5q_B 239 AIVSF 243 (252)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98654
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=8.8e-45 Score=346.47 Aligned_cols=230 Identities=19% Similarity=0.209 Sum_probs=201.1
Q ss_pred CCCCCCcHHHHHHHHHhhccCC----ccccCCCCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccC
Q 016163 72 EQDLSWQDDELSTLLSKEVPNR----LYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQR 147 (394)
Q Consensus 72 ~~d~~~~de~l~~Ll~kE~~~~----~~~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~ 147 (394)
++++.|++|++ +|+++|.++. ++...|.+ +++.+|.++|+||.+|+.+|+++++|+++||+|+|||+++..+.+
T Consensus 13 dp~~~~~~~i~-~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~ 90 (257)
T 1g3n_C 13 DPTLCEDRIFY-NILEIEPRFLTSDSVFGTFQQS-LTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSK 90 (257)
T ss_dssp ---CHHHHHHH-HHHHHGGGGCCCGGGHHHHTSS-CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCH
T ss_pred CCccccHHHHH-HHHHHHHHhCCChhHHHhcCcc-CCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCH
Confidence 67778889999 9999999876 23345665 999999999999999999999999999999999999999999887
Q ss_pred CcchhHHHHHHHHHHhhhcccccCCCccchh-hcccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCC
Q 016163 148 DKPWMAQLAAVACLSLAAKVEETQVPLLLDL-QVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLK 226 (394)
Q Consensus 148 ~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~ 226 (394)
.+ +||+|+|||+||||+||+.+|.+.++ .++++. |++++|.+||+.||++|+|++++|||++|+.+|++.++.+
T Consensus 91 ~~---lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~--~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~ 165 (257)
T 1g3n_C 91 EH---FQKTGSACLLVASKLRSLTPISTSSLCYAAADS--FSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGG 165 (257)
T ss_dssp HH---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTC--SCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCS
T ss_pred HH---HHHHHHHHHHHHHHHccccCCCHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC
Confidence 76 99999999999999999999999999 466655 4899999999999999999999999999999999999876
Q ss_pred CcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccc---cCcchhhhhHhHcCCCHHHHHHHHHHHHHH
Q 016163 227 GYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESS---LGVEYEKQLLNILGTDKDKVEHCSKLIMQL 303 (394)
Q Consensus 227 ~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~---~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l 303 (394)
......+...+.++++.++.++.|++|+||+||+|||++|+..++.. ....|...|..++|+++++|.+|++.|.++
T Consensus 166 ~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 166 SQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTS 245 (257)
T ss_dssp STTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 65433344668899999999999999999999999999999888732 125699999999999999999999999999
Q ss_pred HHhhc
Q 016163 304 AEQVQ 308 (394)
Q Consensus 304 ~~~~~ 308 (394)
+.+..
T Consensus 246 ~~~~~ 250 (257)
T 1g3n_C 246 VSDFD 250 (257)
T ss_dssp HHHCC
T ss_pred HHHCC
Confidence 97653
No 5
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=3.8e-44 Score=341.54 Aligned_cols=227 Identities=15% Similarity=0.190 Sum_probs=197.9
Q ss_pred CCCCCCcHHHHHHHHHhhccCC----ccccCCCCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccC
Q 016163 72 EQDLSWQDDELSTLLSKEVPNR----LYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQR 147 (394)
Q Consensus 72 ~~d~~~~de~l~~Ll~kE~~~~----~~~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~ 147 (394)
++.+++++|++. |+++|.++. ++...|.+ +++.+|.++|+||.+|+.+|+++++|+++||+|+|||+++..+++
T Consensus 14 dp~l~~~~~i~~-l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~ 91 (254)
T 2f2c_A 14 DSTTMKDPRVLN-NLKLRELLLPKFTSLWEIQTE-VTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTK 91 (254)
T ss_dssp CHHHHTCHHHHH-HHHHHHTTSCCCSSTTTTCSS-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCT
T ss_pred CcccccHHHHHH-HHHHHHhhCCCchhhhhcCcc-CCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCH
Confidence 455667899999 999999887 23345555 999999999999999999999999999999999999999999998
Q ss_pred CcchhHHHHHHHHHHhhhcccccCCCccchh-hcccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCC
Q 016163 148 DKPWMAQLAAVACLSLAAKVEETQVPLLLDL-QVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLK 226 (394)
Q Consensus 148 ~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~ 226 (394)
.+ +||+|+|||+||||+||..+|.+.++ .++++ .|++++|.+||+.||++|+|++++|||++|+.+|++.++.+
T Consensus 92 ~~---lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~--~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~ 166 (254)
T 2f2c_A 92 KT---LQKIGAACVLIGSKIRTVKPMTVSKLTYLSCD--CFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIP 166 (254)
T ss_dssp TT---HHHHHHHHHHHHHHHHCSSCCCHHHHSTTC-----CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCC
T ss_pred HH---ccHHHHHHHHHHHHhcccCCCCHHHHHHHhCC--CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC
Confidence 88 99999999999999999999999999 35554 45999999999999999999999999999999999999876
Q ss_pred CcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcch---hhhhHhHcCCCHHHHHHHHHHHHHH
Q 016163 227 GYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEY---EKQLLNILGTDKDKVEHCSKLIMQL 303 (394)
Q Consensus 227 ~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~---~~~L~~~~~~~~~~l~~C~~~l~~l 303 (394)
......+...|.++++.++.|+.|++|+||+||||||++|+...+ .....| ...|..++|+++++|.+|++.|.++
T Consensus 167 ~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~-~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 167 EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDN-TNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTC-CSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcC-CCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 654323345688999999999999999999999999999998852 222234 8899999999999999999999999
Q ss_pred HHh
Q 016163 304 AEQ 306 (394)
Q Consensus 304 ~~~ 306 (394)
+.+
T Consensus 246 ~~~ 248 (254)
T 2f2c_A 246 FSL 248 (254)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
No 6
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=4.6e-44 Score=343.80 Aligned_cols=243 Identities=19% Similarity=0.292 Sum_probs=213.1
Q ss_pred CcHHHHHHHHHhhccCCc-cccCCCCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchhHHH
Q 016163 77 WQDDELSTLLSKEVPNRL-YNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQL 155 (394)
Q Consensus 77 ~~de~l~~Ll~kE~~~~~-~~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqL 155 (394)
|.+|++.+|+++|.++.. -+.++.+.++..+|..+|+||.+|+.+|+++++|+++||+|+|||+++..+++.+ +||
T Consensus 6 Y~~di~~~l~~~E~~~~~~~~y~~~q~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~---lql 82 (269)
T 2b9r_A 6 YVKDIYAYLRQLEAAQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM---LQL 82 (269)
T ss_dssp -CCTTTTTHHHHHHTTCCCTTTTSSSSSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG---HHH
T ss_pred HHHHHHHHHHHHHHhhCCCcccccCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH---hhH
Confidence 788999999999998761 1112223699999999999999999999999999999999999999999998877 999
Q ss_pred HHHHHHHhhhcccccCCCccchh-hcccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCCCcccHHHH
Q 016163 156 AAVACLSLAAKVEETQVPLLLDL-QVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFL 234 (394)
Q Consensus 156 vavaCL~LAaK~EE~~~p~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~~~~~~~~l 234 (394)
+|+|||+||||+||+.+|.+.++ .++++. |++++|.+||+.||++|+|++++|||++|+.+|++.++.+. +..
T Consensus 83 v~~acL~iA~K~eE~~~p~~~d~~~~~~~~--~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~----~~~ 156 (269)
T 2b9r_A 83 VGVTAMFIASKYEEMYPPEIGDFAFVTDNT--YTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDV----EQH 156 (269)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHHTCSS--SCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCH----HHH
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCH----HHH
Confidence 99999999999999999999999 465554 58999999999999999999999999999999998877543 455
Q ss_pred HHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHHHHHHHHHHHHHHHHhhcc--CCc
Q 016163 235 KRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQG--QGS 312 (394)
Q Consensus 235 ~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~~~~--~~~ 312 (394)
..|+++++.++.++.|++|+||.||+|||++|+..++. ..|...+..++|+++++|.+|++.|.+++..... .+.
T Consensus 157 ~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~---~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~ 233 (269)
T 2b9r_A 157 TLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDN---GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKH 233 (269)
T ss_dssp HHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTC---CCSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSC
T ss_pred HHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCC---CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 67899999999999999999999999999999998874 3699999999999999999999999999876543 367
Q ss_pred hhhhhcccCCCCCCCCCCC
Q 016163 313 QSIKRKFGSITVPVVPGSP 331 (394)
Q Consensus 313 ~~~~~ky~s~~~~~~p~sP 331 (394)
+++++||++..+..++..|
T Consensus 234 ~ai~~Ky~~~~~~~vs~~~ 252 (269)
T 2b9r_A 234 MTVKNKYATSKHAKISTLP 252 (269)
T ss_dssp CHHHHHTTSGGGTTGGGSS
T ss_pred HHHHHHhcchhhCcccCCC
Confidence 8999999987776665554
No 7
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=8.4e-43 Score=335.24 Aligned_cols=231 Identities=23% Similarity=0.351 Sum_probs=196.5
Q ss_pred CCCCCCcHHHHHHHHHhhccCC----ccccCCCCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccC
Q 016163 72 EQDLSWQDDELSTLLSKEVPNR----LYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQR 147 (394)
Q Consensus 72 ~~d~~~~de~l~~Ll~kE~~~~----~~~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~ 147 (394)
+++++ ++|++.+|+++|.++. ++...|.+ +++.+|.++|+||.+|+.+|+++++|+++||+|+|||+++.++++
T Consensus 19 dp~~~-~~~i~~~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~ 96 (271)
T 2w96_A 19 DANLL-NDRVLRAMLKAEETCAPSVSYFKCVQKE-VLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKK 96 (271)
T ss_dssp -------CHHHHHHHHHHHHTCCCTTHHHHTCSS-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCT
T ss_pred CCccc-HHHHHHHHHHHHHHhCCCchHHHhcCCc-CCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCH
Confidence 45555 7899999999999876 34556666 999999999999999999999999999999999999999999998
Q ss_pred CcchhHHHHHHHHHHhhhcccccCCCccchh-hcccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCC
Q 016163 148 DKPWMAQLAAVACLSLAAKVEETQVPLLLDL-QVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLK 226 (394)
Q Consensus 148 ~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~ 226 (394)
.+ +||+|+|||+||||+||+.+|.+.++ .++++ .|++++|.+||+.||++|+|++++|||++|+.+|++.++..
T Consensus 97 ~~---lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~--~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~ 171 (271)
T 2w96_A 97 SR---LQLLGATCMFVASKMKETIPLTAEKLCIYTDN--SIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEA 171 (271)
T ss_dssp TT---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT--SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCC
T ss_pred HH---HHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCC
Confidence 88 99999999999999999988999998 35544 45999999999999999999999999999999999999876
Q ss_pred CcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccc--cC----cchhhhhHhHcCCCHHHHHHHHHHH
Q 016163 227 GYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESS--LG----VEYEKQLLNILGTDKDKVEHCSKLI 300 (394)
Q Consensus 227 ~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~--~~----~~~~~~L~~~~~~~~~~l~~C~~~l 300 (394)
......+...+.++++.++.|+.|++|+||+||+|||++|+..++.. .. ..|.+.|..++|+++++|.+|++.|
T Consensus 172 ~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i 251 (271)
T 2w96_A 172 EENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQI 251 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 54322233568889999999999999999999999999999887631 11 2355678889999999999999999
Q ss_pred HHHHHhhcc
Q 016163 301 MQLAEQVQG 309 (394)
Q Consensus 301 ~~l~~~~~~ 309 (394)
.+++.+...
T Consensus 252 ~~l~~~~~~ 260 (271)
T 2w96_A 252 EALLESSLR 260 (271)
T ss_dssp HHHHTTTTT
T ss_pred HHHHHHHHH
Confidence 999986643
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=4.4e-41 Score=325.42 Aligned_cols=219 Identities=21% Similarity=0.372 Sum_probs=188.4
Q ss_pred CCCCCc--HHHHHHHHHhhccCC---ccccCCCCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-cccc
Q 016163 73 QDLSWQ--DDELSTLLSKEVPNR---LYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFS-FQLQ 146 (394)
Q Consensus 73 ~d~~~~--de~l~~Ll~kE~~~~---~~~~~q~~~i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~-~~v~ 146 (394)
++++|+ +|++.+|+++|.++. .+...|.+ +++.+|.++|+||.+|+.+|+++++|+++||+|+|||+++ ..+.
T Consensus 11 p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~-i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~ 89 (283)
T 1w98_B 11 PVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPL-LQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV 89 (283)
T ss_dssp CCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTT-CCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cchhhcCHHHHHHHHHHHHHHhCCCchhhccCCC-CCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCC
Confidence 667664 599999999999876 23233444 9999999999999999999999999999999999999998 5776
Q ss_pred CCcchhHHHHHHHHHHhhhcccccCCCccchh-hcccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCC
Q 016163 147 RDKPWMAQLAAVACLSLAAKVEETQVPLLLDL-QVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGL 225 (394)
Q Consensus 147 ~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~ 225 (394)
+.+ +||+|+|||+||||+||+.+|.+.++ .++++. |++++|.+||+.||++|+|++++|||++|+.+|++.++.
T Consensus 90 ~~~---lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~--~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~ 164 (283)
T 1w98_B 90 KTL---LQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGA--CSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYL 164 (283)
T ss_dssp GGG---HHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTS--SCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred HHH---HHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhcc
Confidence 555 99999999999999999999999999 466554 589999999999999999999999999999999999876
Q ss_pred CCcc-------cHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHHHHHHHHH
Q 016163 226 KGYL-------CWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSK 298 (394)
Q Consensus 226 ~~~~-------~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~ 298 (394)
++.. .......+.++++.++.|+.|++|+||+||||||++|. |.+.|..++|+++++|.+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~----------~~~~l~~~tg~~~~~i~~c~~ 234 (283)
T 1w98_B 165 NDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS----------SSELMQKVSGYQWCDIENCVK 234 (283)
T ss_dssp CSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS----------CHHHHHHHSCCCHHHHHHHHH
T ss_pred CchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH----------ChHHHHHHhCCCHHHHHHHHH
Confidence 5431 11223346678999999999999999999999999985 467788999999999999999
Q ss_pred HHHHHHHhh
Q 016163 299 LIMQLAEQV 307 (394)
Q Consensus 299 ~l~~l~~~~ 307 (394)
.|..++..-
T Consensus 235 ~l~~~~~~~ 243 (283)
T 1w98_B 235 WMVPFAMVI 243 (283)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887643
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.2e-34 Score=274.18 Aligned_cols=200 Identities=20% Similarity=0.254 Sum_probs=171.0
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccchhh-c-
Q 016163 103 SLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQ-V- 180 (394)
Q Consensus 103 i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~-v- 180 (394)
....+|..+++||.+++.+|+++++|+++|++|||||+++.++.+.+ +|++|+|||+||||+||. +|.+.++. +
T Consensus 36 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~eE~-~~~l~d~~~~~ 111 (258)
T 2i53_A 36 TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFP---RYVTGACCLFLAGKVEET-PKKCKDIIKTA 111 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcC---HHHHHHHHHHHHHccccc-cccHHHHHHHH
Confidence 66789999999999999999999999999999999999999999887 999999999999999996 77888884 2
Q ss_pred ----cccccc----ccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccC
Q 016163 181 ----EDIKFV----FEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQ 252 (394)
Q Consensus 181 ----~~~~~~----f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~ 252 (394)
.++.|. .++++|.+||+.||++|+|+++++||+.|+.+|++.++.+.....++...|+++++.++.++.++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~ 191 (258)
T 2i53_A 112 RSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQ 191 (258)
T ss_dssp HHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhc
Confidence 222221 148999999999999999999999999999999999987653333577889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccccCcchh-----hhhHhH--cCCCHHHHHHHHHHHHHHHHhh
Q 016163 253 YLPSVMANATMLHVVQNIESSLGVEYE-----KQLLNI--LGTDKDKVEHCSKLIMQLAEQV 307 (394)
Q Consensus 253 ~~PS~IAaAai~lA~~~l~~~~~~~~~-----~~L~~~--~~~~~~~l~~C~~~l~~l~~~~ 307 (394)
|+||.||+|||++|.+.++.. .+.|. ..|+.. .|++.++|.+|++.|.+++...
T Consensus 192 ~~Ps~IAaAai~lA~~~~~~~-~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~ 252 (258)
T 2i53_A 192 WEPEIIAVAVMYLAGRLCKFE-IQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQG 252 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHTCC-GGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSS
T ss_pred cChHHHHHHHHHHHHHHhCCC-CCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999987632 12232 235554 4999999999999999988654
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.7e-34 Score=274.91 Aligned_cols=208 Identities=20% Similarity=0.203 Sum_probs=179.3
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccchhh-c-
Q 016163 103 SLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQ-V- 180 (394)
Q Consensus 103 i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~-v- 180 (394)
....+|..+++||.+|+.+|+++++|+++|++|||||+++..+.+.+ +|++|+|||+||||+||+.+|.+.++. +
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSID---PVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSC---HHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcC---HHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 33579999999999999999999999999999999999999999888 999999999999999999887777773 2
Q ss_pred -----------ccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhc
Q 016163 181 -----------EDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSS 249 (394)
Q Consensus 181 -----------~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~ 249 (394)
.+..|.+++++|++||+.||++|+|+++++||+.||..|++.++.+ ..+.+.|+++++.++.+..
T Consensus 115 ~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~----~~~~~~A~~~l~~sl~t~~ 190 (285)
T 3rgf_B 115 TSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE----DMLLPLAWRIVNDTYRTDL 190 (285)
T ss_dssp HHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH----HHHHHHHHHHHHHHTTSSH
T ss_pred HHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHccCh
Confidence 2345667899999999999999999999999999999999999854 2567889999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHHHHHHHHHHHHHHHHhhcc----CCchhhhhcccCC
Q 016163 250 FMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQG----QGSQSIKRKFGSI 322 (394)
Q Consensus 250 ~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~~~~----~~~~~~~~ky~s~ 322 (394)
++.|+||.||+|||++|...++.. . ..|+..+|++.++|.+|+..|.+++..... ....++..|+...
T Consensus 191 ~l~~~Ps~IAaAaiylA~~~~~~~-~----~~W~~~~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~ 262 (285)
T 3rgf_B 191 CLLYPPFMIALACLHVACVVQQKD-A----RQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKP 262 (285)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTTCC-C----HHHHHTSCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCC
T ss_pred hhccCHHHHHHHHHHHHHHHcCCC-h----hhHHHHHCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCC
Confidence 999999999999999999887632 1 356667899999999999999999986432 1234556666543
No 11
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=2e-33 Score=267.59 Aligned_cols=196 Identities=15% Similarity=0.210 Sum_probs=167.8
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccchhh-c-
Q 016163 103 SLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQ-V- 180 (394)
Q Consensus 103 i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~-v- 180 (394)
....+|..+++||.+++.+|+++++|+++|++|||||+++.++.+.+ +|++|+|||+||||+||+ +|.+.++. +
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~EE~-p~~l~d~~~~~ 101 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFN---KNIISSTALFLAAKVEEQ-ARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhC---HHHHHHHHHHHHhccccC-CcCHHHHHHHH
Confidence 44589999999999999999999999999999999999999998888 999999999999999999 88888883 2
Q ss_pred -------------ccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhc-
Q 016163 181 -------------EDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAIS- 246 (394)
Q Consensus 181 -------------~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~- 246 (394)
++..|.+.+++|.+||+.||++|+|+++++||+.|+..|++.++.+. ++...|+++++.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~----~~~~~A~~~~~~sl~~ 177 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK----DLAQTSYFMATNSLHL 177 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc----HHHHHHHHHHHhhhhc
Confidence 23455555999999999999999999999999999999999998643 466778899988885
Q ss_pred hhcccCCCHHHHHHHHHHHHHHHhccccC-----cchhhhhHhHcCCCHHHHHHHHHHHHHHHHhhc
Q 016163 247 DSSFMQYLPSVMANATMLHVVQNIESSLG-----VEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQ 308 (394)
Q Consensus 247 d~~~l~~~PS~IAaAai~lA~~~l~~~~~-----~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~~~ 308 (394)
+..++.|+||.||+|||++|...++...+ ..|...+ ..+++.++|.+|++.|.+++.+..
T Consensus 178 ~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~~ 242 (257)
T 2ivx_A 178 TTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKTP 242 (257)
T ss_dssp CCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTSH
T ss_pred ccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhCh
Confidence 55599999999999999999998773221 2344332 247999999999999999997653
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-32 Score=256.96 Aligned_cols=188 Identities=16% Similarity=0.117 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHHhhhcccccCCCccchhh-cccc--
Q 016163 108 RSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQR-DKPWMAQLAAVACLSLAAKVEETQVPLLLDLQ-VEDI-- 183 (394)
Q Consensus 108 R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~-~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~-v~~~-- 183 (394)
|..+++||.+++..+++++.|+++|++|||||+++.++.+ .+ +|++|+|||+||||+||+ ++.+.++. ++..
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~---~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFS---LEALVATCIYLSCKVEEC-PVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccC---HHHHHHHHHHHHhccccC-cccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999988 77 999999999999999996 67788883 4332
Q ss_pred --cccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHH
Q 016163 184 --KFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANA 261 (394)
Q Consensus 184 --~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaA 261 (394)
.+.+++++|.+||+.||++|+|++.++||+.||..|++.++.+ .++.+.|.++++.++.+..++.|+||.||+|
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~----~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaA 179 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN----QKQLEFAWSIVNDSYASSLCLMAHPHQLAYA 179 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC----HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHcCCchhccCHHHHHHH
Confidence 3467899999999999999999999999999999999987654 3567889999999999999999999999999
Q ss_pred HHHHHHHHhccccCcchhhhhHhHcCCCHHHHHHHHHHHHHHHHhh
Q 016163 262 TMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQV 307 (394)
Q Consensus 262 ai~lA~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~~ 307 (394)
||++|....+.. .+.|...|. |++.++|.+|++.|.+++...
T Consensus 180 ai~lA~~~~~~~-~~~~~~~~~---~~~~~~i~~~~~~i~~ly~~~ 221 (235)
T 1zp2_A 180 ALLISCCNDENT-IPKLLDLIK---STDAFKVILCVQRIISIYYFE 221 (235)
T ss_dssp HHHHHHTSCTTH-HHHHHHHCC---HHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhcCCC-CCCCcchhh---cCCHHHHHHHHHHHHHHHhhC
Confidence 999999876522 122444332 999999999999999998754
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.98 E-value=2.5e-32 Score=272.16 Aligned_cols=195 Identities=17% Similarity=0.199 Sum_probs=166.5
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccchhh-c-
Q 016163 103 SLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQ-V- 180 (394)
Q Consensus 103 i~~~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~-v- 180 (394)
....+|..+++||.+|+.+|+++++|+++||+|||||+++..+.+.+ +|++|+|||+||+|+||+ ++.+.++. +
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~---~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFP---GNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccccc---HHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 44589999999999999999999999999999999999999998888 999999999999999999 78888883 2
Q ss_pred -------------ccccccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhc-
Q 016163 181 -------------EDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAIS- 246 (394)
Q Consensus 181 -------------~~~~~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~- 246 (394)
.+..|.+++++|++||+.||++|+|+|+++||+.||..|++.++.. .++...|+++++.++.
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~----~~l~~~A~~ll~~sl~~ 184 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS----KDLAQTSYFMATNSLHL 184 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC----HHHHHHHHHHHHHHTTT
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhc
Confidence 2345655699999999999999999999999999999999998764 2466788899988885
Q ss_pred hhcccCCCHHHHHHHHHHHHHHHhccccC-----cchhhhhHhHcCCCHHHHHHHHHHHHHHHHhh
Q 016163 247 DSSFMQYLPSVMANATMLHVVQNIESSLG-----VEYEKQLLNILGTDKDKVEHCSKLIMQLAEQV 307 (394)
Q Consensus 247 d~~~l~~~PS~IAaAai~lA~~~l~~~~~-----~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~~ 307 (394)
+..++.|+||+||+|||++|...++...+ ..|...+ ..+++.++|.+|++.|.+++...
T Consensus 185 t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 185 TTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKT 248 (358)
T ss_dssp SCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTC
T ss_pred CcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhC
Confidence 44589999999999999999998863211 2343332 24789999999999999998654
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=6e-30 Score=251.74 Aligned_cols=196 Identities=16% Similarity=0.135 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccchhh-cc
Q 016163 105 SRARSEAVDWMLKVNAHYS--FTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQ-VE 181 (394)
Q Consensus 105 ~~~R~~lvdWi~~v~~~~~--l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~-v~ 181 (394)
..+|...++||.+|+.+|+ +++.|+++|++|||||++..++.+.+ +|++|+|||+||||+||+ ++.+.++. +.
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~-~~~l~d~v~~~ 129 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYH---PRIIMLTCAFLACKVDEF-NVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcC---HHHHHHHHHHHHHhhhcC-CCCHHHHHHHh
Confidence 4689999999999999999 99999999999999999999998887 999999999999999999 56788883 22
Q ss_pred ccc---ccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHHhhchhcccCC
Q 016163 182 DIK---FVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRL-----GLKGYLCWEFLKRCDRILLSAISDSSFMQY 253 (394)
Q Consensus 182 ~~~---~~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l-----~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~ 253 (394)
... ..+++++|++||+.||++|+|++.++||+.||..|+..+ +.+. ...+...|+.++..++.+..++.|
T Consensus 130 ~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~--~~~l~~~A~~~l~~sl~t~~~l~~ 207 (323)
T 1jkw_A 130 RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN--PEILRKTADDFLNRIALTDAYLLY 207 (323)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCC--HHHHHHHHHHHHHHHTTSTHHHHS
T ss_pred ccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHhccHHHcC
Confidence 221 235789999999999999999999999999999999776 2322 124667899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccccCcchhhhhHhH--cCCCHHHHHHHHHHHHHHHHhh
Q 016163 254 LPSVMANATMLHVVQNIESSLGVEYEKQLLNI--LGTDKDKVEHCSKLIMQLAEQV 307 (394)
Q Consensus 254 ~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~--~~~~~~~l~~C~~~l~~l~~~~ 307 (394)
+||+||+|||++|...++.. .+.|...+... .+++.++|.+|++.|..++...
T Consensus 208 ~Ps~IAaAai~lA~~~~~~~-~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 208 TPSQIALTAILSSASRAGIT-MESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp CHHHHHHHHHHHHHHHHSCC-CTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCC-hHHHHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 99999999999999988743 24688776654 6789999999999999999864
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.94 E-value=1.5e-25 Score=206.49 Aligned_cols=186 Identities=18% Similarity=0.168 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccchhh-cccccc
Q 016163 107 ARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQ-VEDIKF 185 (394)
Q Consensus 107 ~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~-v~~~~~ 185 (394)
....+.++|.+++..+++++.|..+|++|++||+....+...+ .+++|+|||+||||+||+ ++.+.|+. +..
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~---~~~v~aaclylAcK~ee~-p~~l~di~~~~~--- 76 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRA---NDAIASACLYIACRQEGV-PRTFKEICAVSR--- 76 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS---
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCC---HHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC---
Confidence 4678999999999999999999999999999999999998777 999999999999999998 77888883 322
Q ss_pred cccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHH
Q 016163 186 VFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLH 265 (394)
Q Consensus 186 ~f~~~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~l 265 (394)
+++++|.++|+.||++|+|++.+++|+.|+..|...+++++ +..+.|++++..++.+.-+++++|+.||+|||++
T Consensus 77 -~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~----~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiyl 151 (207)
T 1c9b_A 77 -ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK----QVQMAATHIARKAVELDLVPGRSPISVAAAAIYM 151 (207)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHH
Confidence 48999999999999999999999999999999999998764 4567788999998888889999999999999999
Q ss_pred HHHHhccccCcchhhhhHhHcCCCHHHHHHHHHHHHHHHHhh
Q 016163 266 VVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQV 307 (394)
Q Consensus 266 A~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~~ 307 (394)
|.+..+ ...|...+..++|+++..|.+|++.|.+.....
T Consensus 152 A~~~~~---~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~ 190 (207)
T 1c9b_A 152 ASQASA---EKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDL 190 (207)
T ss_dssp HHHTSS---SCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHH
T ss_pred HHHHHC---CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 999876 344778899999999999999999998866543
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.88 E-value=2.3e-21 Score=177.50 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccchhh-ccccc
Q 016163 106 RARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQ-VEDIK 184 (394)
Q Consensus 106 ~~R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~-v~~~~ 184 (394)
+....+.++|.+++..+++++.+...|..|++||+....+...+ .+.+|+|||++|||.|+. +..+.|+. +. +
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~---~~~vaaAclylAcr~~~~-p~~l~di~~~~--~ 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRS---IESVMAACVYAACRLLKV-PRTLDEIADIA--R 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCC---HHHHHHHHHHHHHHHHTC-CCCHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCC---HHHHHHHHHHHHHHHcCC-CCCHHHHHHHH--C
Confidence 44678999999999999999999999999999999998887777 899999999999999996 77888883 32 2
Q ss_pred ccccHHHHHHHHHHHHHHcCccccC--CChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHH
Q 016163 185 FVFEAKTIQRMEILVLSTLQWKMNP--VTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANAT 262 (394)
Q Consensus 185 ~~f~~~~I~~mE~~IL~~L~w~l~~--pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAa 262 (394)
.+.++|.++++.|++.|+|++.+ ++|+.|+..|...+++++ +..+.|++++..+..+..+.+++|+.||+||
T Consensus 81 --v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAa 154 (200)
T 1ais_B 81 --VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE----KVRRRAIEILDEAYKRGLTSGKSPAGLVAAA 154 (200)
T ss_dssp --SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHcCcccCCCHHHHHHHH
Confidence 47999999999999999999999 999999999999999764 4567888999999988889999999999999
Q ss_pred HHHHHHHhccccCcchhhhhHhHcCCCHHHHHHHHHHHHHHHH
Q 016163 263 MLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAE 305 (394)
Q Consensus 263 i~lA~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 305 (394)
||+|.+..+ ...|...+..++|+++..|.+|++.|.+.+.
T Consensus 155 ly~A~~~~~---~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 155 LYIASLLEG---EKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHTT---CCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC---CCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 999998876 3447889999999999999999999988653
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.71 E-value=6.7e-18 Score=167.27 Aligned_cols=183 Identities=9% Similarity=0.064 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccchhh-ccccccc
Q 016163 108 RSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQ-VEDIKFV 186 (394)
Q Consensus 108 R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~-v~~~~~~ 186 (394)
...+...|..++..++++..+.-.|..||.|++....+...+ .+.+++|||+||+|.|++ +..+.|+. +. +
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~---~~~vaaAclyiAcR~e~~-prtl~ei~~~~--~-- 197 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKEIQSLI--H-- 197 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCC---SHHHHTTTTTTTSBTTBS-SCCHHHHHHSS--S--
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCc---HHHHHHHHHHHHHHHcCC-CccHHHHHHHH--C--
Confidence 567889999999999999999999999999999998888777 999999999999999998 67888883 32 2
Q ss_pred ccHHHHHHHHHHHHHHcC------------ccccCCChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCC
Q 016163 187 FEAKTIQRMEILVLSTLQ------------WKMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYL 254 (394)
Q Consensus 187 f~~~~I~~mE~~IL~~L~------------w~l~~pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~ 254 (394)
.++++|.++++.|++.|+ +.+.+++|..|+..|...+++++ ++.+.|++++..+..+.-+.+++
T Consensus 198 v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~----~v~~~A~~i~~~~~~~~l~~Gr~ 273 (345)
T 3k7a_M 198 VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEIAGKS 273 (345)
T ss_dssp CCSHHHHHHHHHHHHHHTCC------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhchhcCCC
Confidence 378999999999999999 99999999999999999999874 35577888888888888889999
Q ss_pred HHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHHHHHHHHHHHHHHHH
Q 016163 255 PSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAE 305 (394)
Q Consensus 255 PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 305 (394)
|+.|||||||+|....+. ..+...+..++|++...|..+++.|.+...
T Consensus 274 P~~IAaAaIylAa~~~~~---~~t~~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 274 PITIAVVSIYLNILLFQI---PITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999987762 346788999999999999999999988663
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.30 E-value=3e-12 Score=126.66 Aligned_cols=184 Identities=10% Similarity=0.070 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccchhh-ccccccc
Q 016163 108 RSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQ-VEDIKFV 186 (394)
Q Consensus 108 R~~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~-v~~~~~~ 186 (394)
-..+...|.+++..++++..+.-.|..++.+++....+...+ ...++++||++|+|.+++ +..+.|+. +..
T Consensus 126 L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs---~e~vaAAclYiACR~~~~-prtl~eI~~~~~---- 197 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKEIQSLIH---- 197 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCC---HHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCC---HHHHHHHHHHHHHHhcCC-CccHHHHHHHhC----
Confidence 356677889999999999999999999999999988777666 889999999999999987 56777772 221
Q ss_pred ccHHHHHHHHHHHHHHcCcc------------ccCCChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCC
Q 016163 187 FEAKTIQRMEILVLSTLQWK------------MNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYL 254 (394)
Q Consensus 187 f~~~~I~~mE~~IL~~L~w~------------l~~pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~ 254 (394)
.++++|.+..+.|.+.|+.. +.+++|..|+..|...|+++.. +...|..++..+..+.-....+
T Consensus 198 v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~----v~~~A~~i~~~~~~~~i~~GR~ 273 (345)
T 4bbr_M 198 VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ----VTTSAEYTAKKCKEIKEIAGKS 273 (345)
T ss_dssp CCTTHHHHHHHHHHHCC---------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHHhcccccCCC
Confidence 26889999999999999974 7788999999999999998654 4456777777766666678999
Q ss_pred HHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHHHHHHHHHHHHHHHHh
Q 016163 255 PSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQ 306 (394)
Q Consensus 255 PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~ 306 (394)
|+.||+||||+|....+.. .-...+..+.|++..-|...++.|.+....
T Consensus 274 P~~IAAAaIylAa~l~g~~---~t~~eIa~v~~Vse~TIr~rykel~~~~~~ 322 (345)
T 4bbr_M 274 PITIAVVSIYLNILLFQIP---ITAAKVGQTLQVTEGTIKSGYKILYEHRDK 322 (345)
T ss_dssp ----------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999876632 234677888999999999999888776543
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.09 E-value=1.5e-05 Score=76.29 Aligned_cols=107 Identities=9% Similarity=0.092 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccchh-hcccccccccH
Q 016163 111 AVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDL-QVEDIKFVFEA 189 (394)
Q Consensus 111 lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl-~v~~~~~~f~~ 189 (394)
+-+|+.++..+-++++.++..|+.|+||+..+..--.-.++..+-+-++||.+|+|+-+.....-..+ .+ ++ ++.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--gG--isl 152 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--GG--VRC 152 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH--HT--SCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc--cC--cCH
Confidence 55688999999999999999999999999986432112245588889999999999966544444444 23 22 489
Q ss_pred HHHHHHHHHHHHHcCccccCCChHHHHHHHHHH
Q 016163 190 KTIQRMEILVLSTLQWKMNPVTPLSFLDYIARR 222 (394)
Q Consensus 190 ~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~ 222 (394)
+++.+||+..|..|+|++.+. +-.|..+++..
T Consensus 153 ~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 153 HELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 999999999999999999654 66676655544
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.81 E-value=0.05 Score=48.56 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCH
Q 016163 211 TPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDK 290 (394)
Q Consensus 211 Tp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~ 290 (394)
..+.+|..+...+++++ .+...|..+.........+-+.+|..+|+||+|+|.+..+ .+.-...+..+++++.
T Consensus 11 ~a~~~I~~~~~~L~L~~----~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~---~p~~l~di~~~~~v~~ 83 (200)
T 1ais_B 11 FALSELDRITAQLKLPR----HVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK---VPRTLDEIADIARVDK 83 (200)
T ss_dssp HHHHHHHHHHHHHTCCH----HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT---CCCCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC---CCCCHHHHHHHHCCCH
Confidence 35678888999998874 4566777777776666667789999999999999999876 2334567778899999
Q ss_pred HHHHHHHHHHHHHHH
Q 016163 291 DKVEHCSKLIMQLAE 305 (394)
Q Consensus 291 ~~l~~C~~~l~~l~~ 305 (394)
.+|..++..|.+.+.
T Consensus 84 ~~i~~~~~~l~~~L~ 98 (200)
T 1ais_B 84 KEIGRSYRFIARNLN 98 (200)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.09 E-value=0.12 Score=46.30 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHH
Q 016163 212 PLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKD 291 (394)
Q Consensus 212 p~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~ 291 (394)
.+.+|..+...+++++ ..+..|..+....+....+.+++|..||+||||+|.+.-+. +.-...+..+++++..
T Consensus 8 a~~~I~~~~~~L~L~~----~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~---p~~l~di~~~~~~~~~ 80 (207)
T 1c9b_A 8 AFKEITTMADRINLPR----NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV---PRTFKEICAVSRISKK 80 (207)
T ss_dssp HHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC---CCCHHHHHHTSSSCHH
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHCCCHH
Confidence 4567888888888764 35566666666666666688999999999999999997662 2345677788899999
Q ss_pred HHHHHHHHHHHHHH
Q 016163 292 KVEHCSKLIMQLAE 305 (394)
Q Consensus 292 ~l~~C~~~l~~l~~ 305 (394)
++..++..|.+.+.
T Consensus 81 ~i~~~~~~ll~~L~ 94 (207)
T 1c9b_A 81 EIGRCFKLILKALE 94 (207)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC
Confidence 99999988877553
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=91.15 E-value=0.77 Score=44.78 Aligned_cols=87 Identities=6% Similarity=0.053 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHH
Q 016163 212 PLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKD 291 (394)
Q Consensus 212 p~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~ 291 (394)
.+..|..+...+++++. +.+.|..+...+.....+-..+...|||||||+|.+..+ .+.-...+..++++++.
T Consensus 129 a~~~I~~~~~~L~Lp~~----v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~---~prtl~eI~~~~~v~~k 201 (345)
T 4bbr_M 129 AFAKITMLCDAAELPKI----VKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE---VARTFKEIQSLIHVKTK 201 (345)
T ss_dssp HHHHHHHHHHHTTCCHH----HHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC---CBCCHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC---CCccHHHHHHHhCCCHH
Confidence 34456667777777643 556666666665554446677889999999999998876 23344677888999999
Q ss_pred HHHHHHHHHHHHHH
Q 016163 292 KVEHCSKLIMQLAE 305 (394)
Q Consensus 292 ~l~~C~~~l~~l~~ 305 (394)
+|..++..|.+.+.
T Consensus 202 eigr~~k~l~~~L~ 215 (345)
T 4bbr_M 202 EFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987654
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=88.53 E-value=2.9 Score=37.98 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccC-CCHHHHHHHHHHHHHHHhccccCcchhhhhHhHc-----
Q 016163 213 LSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQ-YLPSVMANATMLHVVQNIESSLGVEYEKQLLNIL----- 286 (394)
Q Consensus 213 ~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~-~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~----- 286 (394)
.++|......+++.. ..+..|..++...+....+.. +.|-.||+|||++|.+.-+. +. -...+..++
T Consensus 32 ~~~i~~v~~~l~L~~----~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~--~~-~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQ----RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC--PV-HIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC--CC-CHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC--cc-cHHHHHHHHHHHcc
Confidence 456666667777664 344556566666666667888 99999999999999987662 22 223344333
Q ss_pred ---CCCHHHHHHHHHHHHHHHH
Q 016163 287 ---GTDKDKVEHCSKLIMQLAE 305 (394)
Q Consensus 287 ---~~~~~~l~~C~~~l~~l~~ 305 (394)
.+++++|..+-..|.+.+.
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLD 126 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTT
T ss_pred chhhccHHHHHHHHHHHHHHCC
Confidence 5889999999888877553
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=87.62 E-value=0.3 Score=47.63 Aligned_cols=86 Identities=6% Similarity=0.053 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHHH
Q 016163 213 LSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDK 292 (394)
Q Consensus 213 ~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~~ 292 (394)
+.+|..+...+++++. +.+.|..+...++....+-..+...||+||||+|.+..+ .+.-...+..++++++.+
T Consensus 130 ~~~I~~~~~~L~Lp~~----v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~---~prtl~ei~~~~~v~~ke 202 (345)
T 3k7a_M 130 FAKITMLCDAAELPKI----VKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE---VARTFKEIQSLIHVKTKE 202 (345)
T ss_dssp HHHHHHHHHHTTCCHH----HHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTB---SSCCHHHHHHSSSCCSHH
T ss_pred HHHHHHHHHHcCCCHH----HHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcC---CCccHHHHHHHHCCCHHH
Confidence 3567777777877643 456666666665555556778899999999999998665 233456777889999999
Q ss_pred HHHHHHHHHHHHH
Q 016163 293 VEHCSKLIMQLAE 305 (394)
Q Consensus 293 l~~C~~~l~~l~~ 305 (394)
|..|+..|.+.+.
T Consensus 203 Igr~~~~l~~~L~ 215 (345)
T 3k7a_M 203 FGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 25
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=84.25 E-value=4.2 Score=37.21 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCCH----HHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcccccCCCccch------hh-cc
Q 016163 113 DWMLKVNAHYSFTA----LTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLD------LQ-VE 181 (394)
Q Consensus 113 dWi~~v~~~~~l~~----~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~d------l~-v~ 181 (394)
+++......++.+. .+..+|..+++.-+....+-... ...+|+||+++|+++-....|.... .. .-
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWE---PEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSC---HHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccC---hHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 46677777788776 57788888888877665555556 6789999999999986543332111 10 00
Q ss_pred cccccccHHHHHHHHHHHHHHcC
Q 016163 182 DIKFVFEAKTIQRMEILVLSTLQ 204 (394)
Q Consensus 182 ~~~~~f~~~~I~~mE~~IL~~L~ 204 (394)
..+ ++.++|..+-..|++...
T Consensus 230 ~~~--~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQD--VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SSS--CCHHHHHHHHHHHHTTTS
T ss_pred ccC--CCHHHHHHHHHHHHHHHh
Confidence 122 478999998888887654
No 26
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=82.05 E-value=22 Score=32.05 Aligned_cols=149 Identities=13% Similarity=0.153 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcccc---ccCCcchhHHHHHHHHHHhhhcccccCCCccchhhccccccc
Q 016163 110 EAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQ---LQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDIKFV 186 (394)
Q Consensus 110 ~lvdWi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~---v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~v~~~~~~ 186 (394)
.+.+-|+.++.+-+++..++--||.+--.|.-... ..-++ .+-+|++|+.||+---.. |..+.++.+-+...
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~---q~dVAAAc~miAae~~~~-PiplaE~r~lD~sL- 88 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVER---QPDVAAACLMIAAEEAQQ-PLPLAEVRCLDSSL- 88 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHCTTC-
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccc---cHHHHHHHHHHHHHHcCC-CccHHHHHHHhhhh-
Confidence 34566789999999999999999999999986542 23345 788999999999853333 44566664333332
Q ss_pred ccHHHHHHHHHHHHHHcCc-----cccCCChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHH
Q 016163 187 FEAKTIQRMEILVLSTLQW-----KMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANA 261 (394)
Q Consensus 187 f~~~~I~~mE~~IL~~L~w-----~l~~pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaA 261 (394)
. +|.---..|++.|+- +|...-.-..|.+|+..+++.-. .+.-.|..++...-.......+---.--.-
T Consensus 89 -~--Dvelrr~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s---~Y~p~C~rL~~ai~~ve~LA~~~~~drii~ 162 (260)
T 3h4c_A 89 -G--DVELRRADIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVS---LYLPHCKRLLTALGRVEALAGLTVADRVTT 162 (260)
T ss_dssp -C--CHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHHHHHHTCGGGTTCCHHHHHHH
T ss_pred -h--HHHHHHHHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchh---hhhhHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 1 333333446666664 22222233455667777776522 234456666665444444566655554555
Q ss_pred HHHHHHHH
Q 016163 262 TMLHVVQN 269 (394)
Q Consensus 262 ai~lA~~~ 269 (394)
|+++|+..
T Consensus 163 AlLLArT~ 170 (260)
T 3h4c_A 163 ALLLARTA 170 (260)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcc
Confidence 67777754
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=79.04 E-value=11 Score=34.44 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhc-cccccCCcchhHHHHHHHHHHhhhcccccCCCccch---hh-cccccccc
Q 016163 113 DWMLKVNAHYSFTALTALLAVNYLDRFLF-SFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLD---LQ-VEDIKFVF 187 (394)
Q Consensus 113 dWi~~v~~~~~l~~~T~~lAV~~lDRFLs-~~~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~d---l~-v~~~~~~f 187 (394)
+++......++.+..+..+|..++..-+. ..-+-... ...+|+||+++|+++-....|...+ .. .-+.. +
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~--~ 222 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYK---PTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPT--V 222 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSC---HHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSS--C
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCC---HHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCC--C
Confidence 35556666778888888888888755442 22233344 6789999999999996654443211 11 11222 3
Q ss_pred cHHHHHHHHHHHHHHc
Q 016163 188 EAKTIQRMEILVLSTL 203 (394)
Q Consensus 188 ~~~~I~~mE~~IL~~L 203 (394)
+.++|..+-..|+..+
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7889998888888765
No 28
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=76.43 E-value=17 Score=33.98 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHc-------
Q 016163 214 SFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNIL------- 286 (394)
Q Consensus 214 ~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~------- 286 (394)
+||......+++.. ..+..|..++..-+....+..+.|-.||+|||++|.+.-+.... -...+..++
T Consensus 48 ~~I~~v~~~l~L~~----~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~--~~~di~~~~~~~~k~~ 121 (285)
T 3rgf_B 48 NVIQALGEHLKLRQ----QVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVV--SNTRLIAAATSVLKTR 121 (285)
T ss_dssp HHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCH----HHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccc--cHHHHHHHHHHHHccc
Confidence 34444445555554 34555666666666667788999999999999999987653211 111222111
Q ss_pred ---------CCCHHHHHHHHHHHHHHH
Q 016163 287 ---------GTDKDKVEHCSKLIMQLA 304 (394)
Q Consensus 287 ---------~~~~~~l~~C~~~l~~l~ 304 (394)
.++.++|..+-..|.+.+
T Consensus 122 ~~~~~~~~~~~~~~~Il~~E~~iL~~L 148 (285)
T 3rgf_B 122 FSYAFPKEFPYRMNHILECEFYLLELM 148 (285)
T ss_dssp CTTTCCSCCCCCHHHHHHHHHHHHHHT
T ss_pred ccccCchhhHHHHHHHHHHHHHHHHHc
Confidence 256788888777766544
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=75.96 E-value=16 Score=33.73 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHc--CCCHH
Q 016163 214 SFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNIL--GTDKD 291 (394)
Q Consensus 214 ~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~--~~~~~ 291 (394)
+|+......+++.. +.+..|..+++..+....+....+-.+|+||+++|.+.-+. .+.-...+..++ .++++
T Consensus 43 ~wl~~v~~~~~l~~----~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~--~~p~~~d~~~~~~~~~~~~ 116 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQ----ETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEM--YPPEIGDFAFVTDNTYTKH 116 (269)
T ss_dssp HHHHHHHHHTTCCH----HHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCS--SCCCHHHHHHHTCSSSCHH
T ss_pred HHHHHHHHHhCCCH----HHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccc--cCccHHHHHHHhcCCCCHH
Confidence 34444445555442 34455556666666666677788899999999999987653 122345566666 38999
Q ss_pred HHHHHHHHHHHHH
Q 016163 292 KVEHCSKLIMQLA 304 (394)
Q Consensus 292 ~l~~C~~~l~~l~ 304 (394)
+|..+-..|.+.+
T Consensus 117 eI~~mE~~IL~~L 129 (269)
T 2b9r_A 117 QIRQMEMKILRAL 129 (269)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999888887754
No 30
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=75.64 E-value=24 Score=32.47 Aligned_cols=68 Identities=9% Similarity=-0.021 Sum_probs=46.1
Q ss_pred HHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHc--CCCHHHHHHHHHHHHHHHH
Q 016163 236 RCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNIL--GTDKDKVEHCSKLIMQLAE 305 (394)
Q Consensus 236 ~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~--~~~~~~l~~C~~~l~~l~~ 305 (394)
.|..+++.-+....+....+-.+|+||+++|.+.-+. .+.-...+..++ .+++++|..+-..|.+.+.
T Consensus 80 lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~--~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 80 LAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKET--IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCS--SCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCC
Confidence 3444444444445566788899999999999997663 122234455555 4899999998888877553
No 31
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=73.05 E-value=23 Score=33.68 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=51.1
Q ss_pred HHHHHHHHcC--CCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCC---
Q 016163 215 FLDYIARRLG--LKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTD--- 289 (394)
Q Consensus 215 FL~~~l~~l~--~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~--- 289 (394)
+|..+...++ +. ...+..|..++..-+....+..+.|-.||+|||++|.+.-+.. .. ...+...++.+
T Consensus 63 ~I~ev~~~l~~~Lp----~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~--~~-l~d~v~~~~~~p~~ 135 (323)
T 1jkw_A 63 RLLEFCSVFKPAMP----RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFN--VS-SPQFVGNLRESPLG 135 (323)
T ss_dssp HHHHHHHHCTTTCC----HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCC--CC-HHHHGGGSSSCHHH
T ss_pred HHHHHHHHHcCCCC----HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCC--CC-HHHHHHHhccChhh
Confidence 3444455555 33 3455666677777777777899999999999999999876632 11 23333333333
Q ss_pred ----HHHHHHHHHHHHHH
Q 016163 290 ----KDKVEHCSKLIMQL 303 (394)
Q Consensus 290 ----~~~l~~C~~~l~~l 303 (394)
.++|..+-..|.+-
T Consensus 136 ~~~~~~~Il~~E~~iL~~ 153 (323)
T 1jkw_A 136 QEKALEQILEYELLLIQQ 153 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 45666665555543
No 32
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=71.68 E-value=26 Score=31.84 Aligned_cols=86 Identities=9% Similarity=-0.005 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHc--CCCHH
Q 016163 214 SFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNIL--GTDKD 291 (394)
Q Consensus 214 ~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~--~~~~~ 291 (394)
+|+......+++... .+..|-.+++..+..........-.+|+||+++|.+.-+.. +.-...+..++ .++++
T Consensus 57 dwl~~v~~~~~l~~e----tl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~--~p~~~d~~~~~~~~~~~~ 130 (254)
T 2f2c_A 57 TWMHLLCESFELDKS----VFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVK--PMTVSKLTYLSCDCFTNL 130 (254)
T ss_dssp HHHHHHHHHTTCCTT----HHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSS--CCCHHHHSTTC---CCHH
T ss_pred HHHHHHHHHHCCCch----HHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccC--CCCHHHHHHHhCCCCCHH
Confidence 344444455555433 33445556666566566778888999999999999876521 22233444444 37899
Q ss_pred HHHHHHHHHHHHHH
Q 016163 292 KVEHCSKLIMQLAE 305 (394)
Q Consensus 292 ~l~~C~~~l~~l~~ 305 (394)
+|..+-..|.+.+.
T Consensus 131 ~i~~mE~~IL~~L~ 144 (254)
T 2f2c_A 131 ELINQEKDILEALK 144 (254)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 99998777776553
No 33
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=71.37 E-value=9.3 Score=37.14 Aligned_cols=85 Identities=14% Similarity=0.098 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcccc-ccCCcchhHHHHHHHHHHhhhcccccCCCccc---hhh-ccccccccc
Q 016163 114 WMLKVNAHYSFTALTALLAVNYLDRFLFSFQ-LQRDKPWMAQLAAVACLSLAAKVEETQVPLLL---DLQ-VEDIKFVFE 188 (394)
Q Consensus 114 Wi~~v~~~~~l~~~T~~lAV~~lDRFLs~~~-v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~---dl~-v~~~~~~f~ 188 (394)
||......++.+.++..+|..++..-+.... +-... ...||+||+++|+++-...+|... ... +-+.. ++
T Consensus 156 fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~---Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~--vt 230 (358)
T 2pk2_A 156 HVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT---PPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDAT--VT 230 (358)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSC---HHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSS--CC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccC---HHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhcc--CC
Confidence 5556666778888888889888866553222 33344 678999999999999665444321 111 11122 37
Q ss_pred HHHHHHHHHHHHHHc
Q 016163 189 AKTIQRMEILVLSTL 203 (394)
Q Consensus 189 ~~~I~~mE~~IL~~L 203 (394)
.++|..+-..|+..+
T Consensus 231 ~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 231 LELLDELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888887665
No 34
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=70.33 E-value=17 Score=33.32 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=42.5
Q ss_pred HHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHc--CCCHHHHHHHHHHHHHHH
Q 016163 237 CDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNIL--GTDKDKVEHCSKLIMQLA 304 (394)
Q Consensus 237 a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~--~~~~~~l~~C~~~l~~l~ 304 (394)
|..+++.-+.-..+.....-.+|+||+++|.+.-+. .+.-...+..++ .+++++|..+-..|.+.+
T Consensus 63 Av~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~--~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L 130 (260)
T 2cch_B 63 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEI--YPPEVAEFVYITDDTYTKKQVLRMEHLVLKVL 130 (260)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCS--SCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhccc--CCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHc
Confidence 333333333333444455778999999999987663 122344555566 489999999888877754
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=68.17 E-value=30 Score=32.66 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=41.2
Q ss_pred HHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcC--CCHHHHHHHHHHHHHHH
Q 016163 239 RILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILG--TDKDKVEHCSKLIMQLA 304 (394)
Q Consensus 239 ~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~--~~~~~l~~C~~~l~~l~ 304 (394)
.+++.-+....+....+-.+|+||+++|.+.-+.. +.-...+..+++ +++++|..+=..|.+.+
T Consensus 97 ~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~--p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L 162 (306)
T 3g33_B 97 NYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETT--PLTIEKLCIYTDHAVSPRQLRDWEVLVLGKL 162 (306)
T ss_dssp HHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSS--CCCTTHHHHHTTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHhccCccHHHHHHHHHHHHHHc
Confidence 33333343444667788899999999999865522 222334555554 78888888877776544
No 36
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=66.96 E-value=23 Score=32.31 Aligned_cols=71 Identities=7% Similarity=-0.066 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHc--CCCHHHHHHHHHHHHHHHH
Q 016163 233 FLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNIL--GTDKDKVEHCSKLIMQLAE 305 (394)
Q Consensus 233 ~l~~a~~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~--~~~~~~l~~C~~~l~~l~~ 305 (394)
.+..|..+++..+....+.....-.+|+||+++|.+.-+.. +.-...+..++ .+++++|..+-..|.+.+.
T Consensus 71 tl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~--~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~ 143 (257)
T 1g3n_C 71 VVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLT--PISTSSLCYAAADSFSRQELIDQEKELLEKLA 143 (257)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcccc--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Confidence 33444455555554444555667789999999999875521 22334555555 3899999998877776543
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=59.19 E-value=59 Score=30.07 Aligned_cols=69 Identities=9% Similarity=0.078 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhch-hcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHc--CCCHHHHHHHHHHHHHHHH
Q 016163 235 KRCDRILLSAISD-SSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNIL--GTDKDKVEHCSKLIMQLAE 305 (394)
Q Consensus 235 ~~a~~ll~~sl~d-~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~--~~~~~~l~~C~~~l~~l~~ 305 (394)
..|..+++..+.- ........-.+|+||+++|.+.-+.. +.-...+..++ .+++++|..+-..|.+.+.
T Consensus 72 ~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~--~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 72 YLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIY--PPKLHQFAYVTDGACSGDEILTMELMIMKALK 143 (283)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSS--CCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccC--CCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 3333444443333 23556778899999999999876531 22334555555 4899999999888877553
No 38
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=34.81 E-value=2.4e+02 Score=25.45 Aligned_cols=64 Identities=11% Similarity=-0.073 Sum_probs=38.6
Q ss_pred HHHHHhhchhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHc--CCCHHHHHHHHHHHHHHH
Q 016163 239 RILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNIL--GTDKDKVEHCSKLIMQLA 304 (394)
Q Consensus 239 ~ll~~sl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~--~~~~~~l~~C~~~l~~l~ 304 (394)
.+++.-+..........-.+|++|+++|.+.-+.. +.-...+..++ .++.++|...=..|.+.+
T Consensus 75 ~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~--p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L 140 (252)
T 1f5q_B 75 ALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYM--PIKATQLAYLCGGATTADKLLTLEVKSLDTL 140 (252)
T ss_dssp HHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHHCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHC
Confidence 33333333334555667789999999999876532 22234444444 478888877655555433
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=32.96 E-value=1.1e+02 Score=23.92 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=48.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccc------cccCCcchhHHHHHHHHHHhhhcccccCCCccchhhccccccccc
Q 016163 115 MLKVNAHYSFTALTALLAVNYLDRFLFSF------QLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFE 188 (394)
Q Consensus 115 i~~v~~~~~l~~~T~~lAV~~lDRFLs~~------~v~~~~p~~lqLvavaCL~LAaK~EE~~~p~l~dl~v~~~~~~f~ 188 (394)
+.+++..||+.. ..-.|-.+|++|=..- .+.-.+ -..+++|++.|||.--..|+...=+-. ++- .
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~----P~f~aaA~~~acr~~K~kVdK~KL~~~--s~l--k 76 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSR----PLFTSAALLSACKILKLKVDKNKMVAT--SGV--K 76 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTS----HHHHHHHHHHHHHHTTCCCCHHHHHHT--TCB--C
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccc----cHHHHHHHHHHHHHHccCCCHHHHHHH--HCC--C
Confidence 457788888776 6667789999998653 222233 356789999999998887765332211 222 3
Q ss_pred HHHHHHHHHHH
Q 016163 189 AKTIQRMEILV 199 (394)
Q Consensus 189 ~~~I~~mE~~I 199 (394)
+.++.+.+..+
T Consensus 77 ~~~f~~l~~~~ 87 (95)
T 3m03_A 77 KAIFDRLCKQL 87 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 40
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=27.87 E-value=2.9e+02 Score=25.90 Aligned_cols=88 Identities=6% Similarity=0.014 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHhh---chhcccCCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHc
Q 016163 210 VTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAI---SDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNIL 286 (394)
Q Consensus 210 pTp~~FL~~~l~~l~~~~~~~~~~l~~a~~ll~~sl---~d~~~l~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~ 286 (394)
++-..|+..+.+...+... .+-.+..+++... ...........-+-++|+.+|.+.+... ..+...|.++.
T Consensus 75 ISI~~Yl~RI~k~t~ls~~----~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~--~ysN~~wAkVg 148 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSLEHC----VLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDS--FSTNAHYAKVG 148 (293)
T ss_dssp SCHHHHHHHHHHTTTCCHH----HHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhcccc--ccChhHhhhcc
Confidence 3456777777766665422 2212222222221 1223345677888899999999998743 34667888899
Q ss_pred CCCHHHHHHHHHHHHHH
Q 016163 287 GTDKDKVEHCSKLIMQL 303 (394)
Q Consensus 287 ~~~~~~l~~C~~~l~~l 303 (394)
|++.+++...=..+..+
T Consensus 149 Gisl~ELN~LE~eFL~l 165 (293)
T 2pmi_B 149 GVRCHELNILENDFLKR 165 (293)
T ss_dssp TSCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99998887764444443
No 41
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=25.27 E-value=1.6e+02 Score=22.97 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHhccccCcchhhhhHhHcCCCHHHHHHHHHHHHHHHH
Q 016163 252 QYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAE 305 (394)
Q Consensus 252 ~~~PS~IAaAai~lA~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 305 (394)
.+.--+-++||+|.+.+..... + -...|...+|+++.++...+..+.++..
T Consensus 42 D~s~P~f~aaA~~~acr~~K~k--V-dK~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 42 DLSRPLFTSAALLSACKILKLK--V-DKNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp CTTSHHHHHHHHHHHHHHTTCC--C-CHHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHccC--C-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3444456778889988877632 1 3467888999999999999988887653
No 42
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=22.47 E-value=3.9e+02 Score=23.30 Aligned_cols=102 Identities=24% Similarity=0.300 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHc--------CC-CH-HHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHhhhcc--cccCCCccc
Q 016163 109 SEAVDWMLKVNAHY--------SF-TA-LTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKV--EETQVPLLL 176 (394)
Q Consensus 109 ~~lvdWi~~v~~~~--------~l-~~-~T~~lAV~~lDRFLs~~~v~~~~p~~lqLvavaCL~LAaK~--EE~~~p~l~ 176 (394)
.++|-|+..|-..+ +| .+ ..++ |+++=|=+-...+.. ...+|-+.+|||+||=-+ .|+..| ++
T Consensus 73 ~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVF--vYmL~R~~v~~~~~t--e~eLqa~vLTCLYlsYSYmGNEISYP-LK 147 (208)
T 1unl_D 73 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVF--LYMLCRDVISSEVGS--DHELQAVLLTCLYLSYSYMGNEISYP-LK 147 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHH--HHHHHHHHSCTTCCC--HHHHHHHHHHHHHHHHHHHCSSSCCC-SG
T ss_pred cceehhHHhhhHHHHHccccccccccchhhhh--HHHHHHHHcccccCC--HHHHHHHHHHHHHHHHHhhCcccccc-Cc
Confidence 35677777776643 12 12 2222 334444332222322 235999999999999888 677655 45
Q ss_pred hhhcccccccccH---HHHHHHHHHHHHHcCccccCCChHHHHHHHHH
Q 016163 177 DLQVEDIKFVFEA---KTIQRMEILVLSTLQWKMNPVTPLSFLDYIAR 221 (394)
Q Consensus 177 dl~v~~~~~~f~~---~~I~~mE~~IL~~L~w~l~~pTp~~FL~~~l~ 221 (394)
-|.|+.++-.|+. .-|.+|-..+|+. -..|.-|-+.|..
T Consensus 148 PFlve~~ke~FWdRCl~ii~~~S~kML~i------N~~p~~Ftevf~e 189 (208)
T 1unl_D 148 PFLVESCKEAFWDRCLSVINLMSSKMLQI------NADPHYFTQVFSD 189 (208)
T ss_dssp GGCCSSCHHHHHHHHHHHHHHHHHHHHHH------HHCHHHHHHHHHH
T ss_pred ceeecCCHHHHHHHHHHHHHhhchhhhee------cCCccHHHHHHHH
Confidence 5656665544442 2344444444432 1235555554443
Done!