BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016164
(394 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis
thaliana GN=MBP1 PE=1 SV=1
Length = 386
Score = 482 bits (1241), Expect = e-135, Method: Compositional matrix adjust.
Identities = 260/389 (66%), Positives = 315/389 (80%), Gaps = 23/389 (5%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLEAT+ICIDNSEWMRNGDY+PSR QAQTEA NL+CGAKTQ NPENTVG++TMAGKGVR
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+
Sbjct: 61 VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGE-DDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNA 179
EKK LE++G++LKKNSV+LDIVNFGE DDE +KLEALL AVNNND SH+VHVP G NA
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANA 180
Query: 180 LSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEER 239
LSDVLLSTP+FTGD EG SG+ +AAAAAAA+G ++FGVDPN+DPELALALRVSMEEER
Sbjct: 181 LSDVLLSTPVFTGD-EGASGYVSAAAAAAAAGGD-FDFGVDPNIDPELALALRVSMEEER 238
Query: 240 ARQEAAAKRAAEEAAKKEKQGEQQSSSQDVT--MTDQDSVPASEADDKKKTTKHDEGLLQ 297
ARQEAAAK+AA+EA +K+K G+ S+SQ+ TD+++ P E D LL
Sbjct: 239 ARQEAAAKKAADEAGQKDKDGDTASASQETVARTTDKNAEPMDE----------DSALLD 288
Query: 298 EAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFV 357
+AIAMS D NMSE A++D +LALALQ+SM G + + + + LL +QAF+
Sbjct: 289 QAIAMSVG-------DVNMSEAADEDQDLALALQMSMS-GEESSEATGAGNNLLGNQAFI 340
Query: 358 SSILASLPGVDPEDPSVKDVLTSMQNQSE 386
SS+L+SLPGVDP DP+VK++L S+ ++S+
Sbjct: 341 SSVLSSLPGVDPNDPAVKELLASLPDESK 369
>sp|P55035|PSMD4_DROME 26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila
melanogaster GN=Pros54 PE=1 SV=2
Length = 396
Score = 275 bits (702), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 230/401 (57%), Gaps = 41/401 (10%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T+IC DNS++ RNGDY P+R Q + NL+C K + NPEN VG+MT++ V
Sbjct: 1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T TSD G+I + MH ++ GE+NL GI++A L LKHRQ K + RI+VFVGSPI H
Sbjct: 60 VLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINH 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPN 178
E+ L ++LKK V +DIV+FG D N E L A + A+N D SHLV VP G +
Sbjct: 120 EEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-S 177
Query: 179 ALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEE 238
LSD LLS+PI G+ A G + +EFGVDPN DPELALALRVSMEE+
Sbjct: 178 VLSDALLSSPIIQGED---------GMGGAGLGGNVFEFGVDPNEDPELALALRVSMEEQ 228
Query: 239 RARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQE 298
R RQE+ +RA + A + + +E + +E +LQ
Sbjct: 229 RQRQESEQRRANPDGAPPTGGDAGGGGGVSGSGPGNEESAGAENE-----ANTEEAMLQR 283
Query: 299 AIAMSS-TPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHS------------ 345
A+A+S+ TP NM+E + ++A A+Q+SMQD D+ +
Sbjct: 284 ALALSTETPEDNLPDFANMTE----EEQIAFAMQMSMQDAPDDSVTQQAKRPKTDEANAP 339
Query: 346 -----DMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSM 381
D S+++ D AF+ S+L +LPGVDP+ +V+D + S+
Sbjct: 340 MDVDEDYSEVIGDPAFLQSVLENLPGVDPQSEAVRDAVGSL 380
>sp|O35226|PSMD4_MOUSE 26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus
GN=Psmd4 PE=1 SV=1
Length = 376
Score = 256 bits (653), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 168/406 (41%), Positives = 243/406 (59%), Gaps = 65/406 (16%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE +E NTEKL A + +N D SHLV VPPGP
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP- 177
Query: 179 ALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEE 238
+L+D L+S+PI G+G A GAS +EFGVDP+ DPELALALRVSMEE+
Sbjct: 178 SLADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSMEEQ 227
Query: 239 RARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQE 298
R RQE A+RAA +A + + P +E D+ LL+
Sbjct: 228 RQRQEEEARRAAAASAAEAGI----------------ATPGTE--------DSDDALLKM 263
Query: 299 AIAMS--STPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTK--------DAPSHSDMS 348
I P P ++S + E++ ++A A+Q+S+Q GT+ DA S D S
Sbjct: 264 TINQQEFGRPGLP-----DLSSMTEEE-QIAYAMQMSLQ-GTEFSQESADMDASSAMDTS 316
Query: 349 ---------QLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
++ D F+ S+L +LPGVDP + +++ V+ ++ +Q+
Sbjct: 317 DPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQA 362
>sp|Q58DA0|PSMD4_BOVIN 26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus
GN=PSMD4 PE=2 SV=1
Length = 382
Score = 254 bits (649), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 160/406 (39%), Positives = 235/406 (57%), Gaps = 64/406 (15%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE +E NTEKL A + +N D SHLV VPPGP
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP- 177
Query: 179 ALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEE 238
+L+D L+S+PI G+G A GAS +EFGVDP+ DPELALALRVSM E
Sbjct: 178 SLADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM--E 225
Query: 239 RARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQE 298
RQ + AA + G + ++D D+ LL+
Sbjct: 226 EQRQRQEEEARRAAAASAAEAGIATAGTED----------------------SDDALLKM 263
Query: 299 AIAMSSTPSYPSGRD--TNMSEVAEDDPELALALQLSMQ--------DGTKDAPSHSDMS 348
I+ GR ++S + E++ ++A A+Q+S+Q DA S D S
Sbjct: 264 TISQQEF-----GRTGLPDLSSMTEEE-QIAYAMQMSLQGAEFGQAESADMDASSAMDTS 317
Query: 349 Q---------LLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
+ ++ D F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 318 EPTKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 363
>sp|P55036|PSMD4_HUMAN 26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens
GN=PSMD4 PE=1 SV=1
Length = 377
Score = 254 bits (649), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 160/406 (39%), Positives = 235/406 (57%), Gaps = 64/406 (15%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPN 178
+K L + ++LKK V +DI+NFGE +E NTEKL A + +N D SHLV VPPGP
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP- 177
Query: 179 ALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEE 238
+L+D L+S+PI G+G A GAS +EFGVDP+ DPELALALRVSM E
Sbjct: 178 SLADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM--E 225
Query: 239 RARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQE 298
RQ + AA + G + ++D D+ LL+
Sbjct: 226 EQRQRQEEEARRAAAASAAEAGIATTGTED----------------------SDDALLKM 263
Query: 299 AIAMSSTPSYPSGRD--TNMSEVAEDDPELALALQLSMQ--------DGTKDAPSHSDMS 348
I+ GR ++S + E++ ++A A+Q+S+Q DA S D S
Sbjct: 264 TISQQEF-----GRTGLPDLSSMTEEE-QIAYAMQMSLQGAEFGQAESADIDASSAMDTS 317
Query: 349 Q---------LLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQS 385
+ ++ D F+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 318 EPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQA 363
>sp|Q553E0|PSMD4_DICDI 26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium
discoideum GN=psmD4 PE=2 SV=1
Length = 349
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 211/378 (55%), Gaps = 62/378 (16%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
M LEAT++C+DNSEWMRNGD+ PSR +AQ +A NLIC +KTQ NPE+ V +M+MAGK
Sbjct: 1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPE 60
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VLVT T +L KIL+ L+I G+++ + +Q+AQLAL+HRQN Q RII FVGSP+K
Sbjct: 61 VLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKE 120
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 180
K+ L + ++LKKN VA+DI+NFGE E N++KLEA + VNNND SHL+ VPPGP+ L
Sbjct: 121 TKEELIQLAKRLKKNGVAVDIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGPHIL 179
Query: 181 SDVLLSTPIF-TGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSM---- 235
SD++L +PI +G G+ GS F ++ + DP+LA+AL++S+
Sbjct: 180 SDIILQSPIVESGSGQFGSEF------------------INADTDPDLAMALKLSLEEEK 221
Query: 236 ----EEERARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKKTTKH 291
E +AR+EA E S+ DV
Sbjct: 222 QRQERERKAREEANGGSTNSGTTTTTAPTE---SNMDVNF-------------------E 259
Query: 292 DEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLL 351
D+ L EA+A+ S + + S D + Q D T S+
Sbjct: 260 DDPELAEALAL----SMATDKMEVQSSTTNTDSQPPQQQQQPPTDDTS--------SEAF 307
Query: 352 ADQAFVSSILASLPGVDP 369
DQ F++S L SLPGVDP
Sbjct: 308 KDQDFLNSTLNSLPGVDP 325
>sp|O94444|RPN10_SCHPO 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1
Length = 243
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/259 (49%), Positives = 170/259 (65%), Gaps = 17/259 (6%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLEAT+I IDNSEWM NGDY P+RF+AQ + ++I K NPEN G+MT+ +
Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T D GK L+ MH L + G GIQ+AQLALKHR+NK Q+QRI+ FVGSPI
Sbjct: 61 VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 180
++K L + +++KKN+VA+DI++ GE N L+ + A N++DS HLV +PP P L
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIGE--LQNESALQHFIDAANSSDSCHLVSIPPSPQLL 178
Query: 181 SDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERA 240
SD++ +PI G G A+ + +E+GVDPNLD ELALAL +SM EERA
Sbjct: 179 SDLVNQSPI-------GQGVVAS--------QNQFEYGVDPNLDVELALALELSMAEERA 223
Query: 241 RQEAAAKRAAEEAAKKEKQ 259
RQE AA++++EE K+ Q
Sbjct: 224 RQEVAAQKSSEETEDKKMQ 242
>sp|O17453|PSMD4_SCHMA 26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma
mansoni PE=2 SV=2
Length = 420
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 153/444 (34%), Positives = 231/444 (52%), Gaps = 100/444 (22%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
M EAT+I +DNS++MRNGD+ P+R QAQ +A LIC +K Q NPENT+G++++A
Sbjct: 1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TE 58
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T+D+ KI +H +E G + + I++A LAL+HRQ + Q+ RI+ F+GSPI
Sbjct: 59 VLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILE 118
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPN 178
++K L + ++LKK V +DI+NFGE+ E N +KL + +N D SHL+ V PG
Sbjct: 119 DEKELTRLAKRLKKEKVNVDIINFGEN-ETNEQKLSEFIDTLNGKDGTGSHLISVAPG-T 176
Query: 179 ALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEE 238
L D L+++P+ G E GSG A A G EFG+D DP+L ALRVSME++
Sbjct: 177 VLHDTLMTSPVVAG--EDGSGMAGAGL--------GLEFGLDGAEDPDLLYALRVSMEDQ 226
Query: 239 RARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQE 298
R RQE E G+ ++S T S+PA +E +LQ+
Sbjct: 227 RMRQE------------HEVNGDGSNTSVVAT-----SLPAGSG-------TSEEAMLQQ 262
Query: 299 AIAMS----STPSYPSGRDTNMSEVAEDDPELALALQLSMQD------------------ 336
A+AMS +T S D +++ ++E+D ++A AL++S+Q
Sbjct: 263 ALAMSMQMNNTESSSLPMDIDLAAMSEED-QIAYALRMSLQQMGEETTQPTTTTLESDKT 321
Query: 337 ---------------------------------GTKDAPSHSDMSQLLADQAFVSSILAS 363
T P+ +D+ ++ D F+ S+L S
Sbjct: 322 IVEPSGVAMDIDQTPTKVTENPNLSSSSGTLAAATSAVPTSADLD-VMYDAEFLESVLQS 380
Query: 364 LPGVDPEDPSVK---DVLTSMQNQ 384
LPGVD ++ V+ + LT Q+Q
Sbjct: 381 LPGVDTQNEDVRKAINALTKSQSQ 404
>sp|P38886|RPN10_YEAST 26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3
Length = 268
Score = 224 bits (571), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/237 (49%), Positives = 163/237 (68%), Gaps = 3/237 (1%)
Query: 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR 60
MVLEAT++ IDNSE+ RNGD+ +RF+AQ ++ I AK NPENTVG+++ AG R
Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60
Query: 61 VLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH 120
VL T T++ GKILA +H +I G+L++A +Q+AQL LKHRQNK Q QRI+ FV SPI
Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120
Query: 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPGPN 178
+ L + + LKKN+VA+DI+NFGE E NTE L+ +AAVNN ++SHL+ V PGP
Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGE-IEQNTELLDEFIAAVNNPQEETSHLLTVTPGPR 179
Query: 179 ALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSM 235
L + + S+PI +G G G + + + + +FGVDP++DPELA+ALR+SM
Sbjct: 180 LLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236
>sp|A2A3N6|PIPSL_HUMAN Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL
PE=5 SV=1
Length = 862
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 221/389 (56%), Gaps = 34/389 (8%)
Query: 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL 62
L+ +DNSE+M NGD+ P+R QAQ +A N +C +KT+ NPEN VG++T+ VL
Sbjct: 488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITLDND-CEVL 546
Query: 63 VTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK 122
T T D G+IL+ +H ++ G++ GI VA LALKHRQ + RII FVG+P++ +
Sbjct: 547 TTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNE 606
Query: 123 KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNAL 180
K L + + LKK V +DI+NFGE +E NTEKL A + +N D SHLV VPPGP +L
Sbjct: 607 KNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SL 664
Query: 181 SDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERA 240
+D L+S PI G+G A GAS +EFGVDP+ DPELAL LRV MEE+R
Sbjct: 665 ADALISFPILAGEG----------GAMMGLGASDFEFGVDPSADPELALVLRVFMEEQRQ 714
Query: 241 RQEAAAKRAAEEAAKKE---KQGEQQSSSQDVTMT-DQDSVPASEADDKKKTTKHDEGLL 296
RQE A++AA +A + G + S + MT Q + D T+ ++ +
Sbjct: 715 RQEEEARQAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGHTGLPDLSSMTEEEKIVC 774
Query: 297 QEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAF 356
A+ MS G + ++E A+ D A+ T + D ++ D F
Sbjct: 775 --AMQMSL-----QGAEFGLAESADIDASSAM--------DTSEPAKEEDDYDVMQDPEF 819
Query: 357 VSSILASLPGVDPEDPSVKDVLTSMQNQS 385
+ S+L +LPGVDP + ++++ + S+ +Q+
Sbjct: 820 LQSVLENLPGVDPNNEAIRNAVGSLASQA 848
>sp|A4T9I4|Y3659_MYCGI UPF0353 protein Mflv_3659 OS=Mycobacterium gilvum (strain PYR-GCK)
GN=Mflv_3659 PE=3 SV=1
Length = 335
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTP 65
++ ID S+ MR D AP+R A EAA QL P +G++ AG VLV+P
Sbjct: 99 VMLVIDVSQSMRATDVAPNRLTAAQEAAKQFAD---QLTPGINLGLIAYAGTAT-VLVSP 154
Query: 66 TSD 68
T++
Sbjct: 155 TTN 157
>sp|A1T8Q8|Y2751_MYCVP UPF0353 protein Mvan_2751 OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=Mvan_2751 PE=3 SV=1
Length = 335
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTP 65
++ ID S+ MR D AP+R A EAA QL P +G++ AG VLV+P
Sbjct: 99 VMLVIDVSQSMRATDVAPNRLVAAQEAAKQFA---DQLTPGINLGLIAYAGTAT-VLVSP 154
Query: 66 TSDLGKILACMHGLEIGGELNLAAGIQVA 94
T++ A + L++ GI A
Sbjct: 155 TTNREATKAAIDKLQLADRTATGEGIFTA 183
>sp|Q9CBL9|Y1808_MYCLE UPF0353 protein ML1808 OS=Mycobacterium leprae (strain TN)
GN=ML1808 PE=3 SV=1
Length = 335
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 LICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT 66
++ ID S+ MR D P+R A EAA G +L P +G++ AG VLV+PT
Sbjct: 100 MLVIDVSQSMRATDVEPNRMAAAQEAAKQFAG---ELTPGINLGLIAYAGTAT-VLVSPT 155
Query: 67 SD 68
++
Sbjct: 156 TN 157
>sp|B8ZS82|Y1808_MYCLB UPF0353 protein MLBr01808 OS=Mycobacterium leprae (strain Br4923)
GN=MLBr01808 PE=3 SV=1
Length = 335
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 LICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT 66
++ ID S+ MR D P+R A EAA G +L P +G++ AG VLV+PT
Sbjct: 100 MLVIDVSQSMRATDVEPNRMAAAQEAAKQFAG---ELTPGINLGLIAYAGTAT-VLVSPT 155
Query: 67 SD 68
++
Sbjct: 156 TN 157
>sp|O07395|Y335_MYCAV UPF0353 protein MAV335 OS=Mycobacterium avium PE=3 SV=1
Length = 335
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTP 65
++ ID S+ MR D AP+R A EAA +L P +G++ AG VLV+P
Sbjct: 99 VMLVIDVSQSMRATDVAPNRMAAAQEAAKQFAD---ELTPGINLGLIAYAGTAT-VLVSP 154
Query: 66 TSD 68
T++
Sbjct: 155 TTN 157
>sp|Q740Y5|Y1207_MYCPA UPF0353 protein MAP_1207 OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=MAP_1207 PE=3 SV=1
Length = 335
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 LICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT 66
++ ID S+ MR D AP+R A EAA +L P +G++ AG VLV+PT
Sbjct: 100 MLVIDVSQSMRATDVAPNRMAAAQEAAKQFAD---ELTPGINLGLIAYAGTAT-VLVSPT 155
Query: 67 SD 68
++
Sbjct: 156 TN 157
>sp|Q1BAI1|EFTS_MYCSS Elongation factor Ts OS=Mycobacterium sp. (strain MCS) GN=tsf PE=3
SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 153 EKLEALLAAVNNNDSSHLVH-----VPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAA 207
EKLE A + + +H +PP L + +TGDGE G+ A A A
Sbjct: 130 EKLELRRVAYFDGNVETYLHKRAADLPPAVGVLVE-------YTGDGENGTEAAHAVALQ 182
Query: 208 AASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQ 267
A+ + Y D PE +A + EE AR E E+A K +G +
Sbjct: 183 IAALKAKYLTREDV---PEDVVANERRIAEETARNEGKP----EQALPKIVEGRVTGFYK 235
Query: 268 DVTMTDQDSVPASEADDKKKTTKHDEGLLQEA 299
DV + DQ SV D KKT K LL EA
Sbjct: 236 DVVLLDQPSVS-----DNKKTVK---ALLDEA 259
>sp|A1UEI1|EFTS_MYCSK Elongation factor Ts OS=Mycobacterium sp. (strain KMS) GN=tsf PE=3
SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 153 EKLEALLAAVNNNDSSHLVH-----VPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAA 207
EKLE A + + +H +PP L + +TGDGE G+ A A A
Sbjct: 130 EKLELRRVAYFDGNVETYLHKRAADLPPAVGVLVE-------YTGDGENGTEAAHAVALQ 182
Query: 208 AASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQ 267
A+ + Y D PE +A + EE AR E E+A K +G +
Sbjct: 183 IAALKAKYLTREDV---PEDVVANERRIAEETARNEGKP----EQALPKIVEGRVTGFYK 235
Query: 268 DVTMTDQDSVPASEADDKKKTTKHDEGLLQEA 299
DV + DQ SV D KKT K LL EA
Sbjct: 236 DVVLLDQPSVS-----DNKKTVK---ALLDEA 259
>sp|A3PXY5|EFTS_MYCSJ Elongation factor Ts OS=Mycobacterium sp. (strain JLS) GN=tsf PE=3
SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 153 EKLEALLAAVNNNDSSHLVH-----VPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAA 207
EKLE A + + +H +PP L + +TGDGE G+ A A A
Sbjct: 130 EKLELRRVAYFDGNVETYLHKRAADLPPAVGVLVE-------YTGDGENGTEAAHAVALQ 182
Query: 208 AASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQ 267
A+ + Y D PE +A + EE AR E E+A K +G +
Sbjct: 183 IAALKAKYLTREDV---PEDVVANERRIAEETARNEGKP----EQALPKIVEGRVTGFYK 235
Query: 268 DVTMTDQDSVPASEADDKKKTTKHDEGLLQEA 299
DV + DQ SV D KKT K LL EA
Sbjct: 236 DVVLLDQPSVS-----DNKKTVK---ALLDEA 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,493,935
Number of Sequences: 539616
Number of extensions: 5991483
Number of successful extensions: 34838
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 416
Number of HSP's that attempted gapping in prelim test: 32812
Number of HSP's gapped (non-prelim): 1942
length of query: 394
length of database: 191,569,459
effective HSP length: 119
effective length of query: 275
effective length of database: 127,355,155
effective search space: 35022667625
effective search space used: 35022667625
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)