Query 016164
Match_columns 394
No_of_seqs 241 out of 475
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2884 26S proteasome regulat 100.0 5.3E-85 1.2E-89 608.0 24.7 240 1-249 1-241 (259)
2 COG5148 RPN10 26S proteasome r 100.0 8.9E-70 1.9E-74 497.5 23.5 233 1-250 1-233 (243)
3 cd01452 VWA_26S_proteasome_sub 100.0 5.4E-56 1.2E-60 410.4 23.6 187 1-188 1-187 (187)
4 PF04056 Ssl1: Ssl1-like; Int 100.0 8.1E-39 1.7E-43 297.2 15.7 169 9-187 1-172 (193)
5 KOG2807 RNA polymerase II tran 100.0 1.2E-31 2.7E-36 262.1 14.7 174 3-187 60-235 (378)
6 cd01453 vWA_transcription_fact 100.0 2.3E-29 4.9E-34 230.5 19.5 173 3-185 3-176 (183)
7 COG5151 SSL1 RNA polymerase II 99.9 1.4E-26 3.1E-31 225.7 13.6 178 3-188 87-267 (421)
8 PRK13685 hypothetical protein; 99.8 9.7E-19 2.1E-23 173.3 20.0 154 5-162 90-266 (326)
9 PF13519 VWA_2: von Willebrand 99.8 2.4E-17 5.2E-22 142.7 18.4 165 5-184 1-169 (172)
10 cd01467 vWA_BatA_type VWA BatA 99.7 2.8E-16 6.2E-21 140.2 19.7 151 5-163 4-168 (180)
11 cd01465 vWA_subgroup VWA subgr 99.7 5.5E-16 1.2E-20 136.3 19.7 146 5-161 2-152 (170)
12 cd01451 vWA_Magnesium_chelatas 99.7 2.7E-15 5.9E-20 135.6 20.1 151 6-163 3-158 (178)
13 cd01472 vWA_collagen von Wille 99.7 1.1E-14 2.3E-19 129.1 18.6 154 5-173 2-161 (164)
14 cd01458 vWA_ku Ku70/Ku80 N-ter 99.6 4.8E-15 1E-19 138.4 16.5 145 4-148 2-174 (218)
15 cd01480 vWA_collagen_alpha_1-V 99.6 1.7E-14 3.8E-19 131.4 18.1 146 5-159 4-160 (186)
16 cd01466 vWA_C3HC4_type VWA C3H 99.6 8.2E-15 1.8E-19 129.9 15.0 148 6-171 3-154 (155)
17 cd01456 vWA_ywmD_type VWA ywmD 99.6 1.7E-14 3.7E-19 133.0 17.6 150 4-163 21-193 (206)
18 cd00198 vWFA Von Willebrand fa 99.6 5.6E-14 1.2E-18 118.3 17.7 150 5-162 2-155 (161)
19 TIGR03436 acidobact_VWFA VWFA- 99.6 5.7E-14 1.2E-18 136.3 19.8 156 5-172 55-238 (296)
20 cd01471 vWA_micronemal_protein 99.6 5.8E-14 1.3E-18 126.8 17.7 170 6-184 3-182 (186)
21 smart00327 VWA von Willebrand 99.6 1.3E-13 2.8E-18 119.9 17.5 149 5-162 3-158 (177)
22 cd01450 vWFA_subfamily_ECM Von 99.6 1.6E-13 3.4E-18 118.2 16.4 147 6-162 3-155 (161)
23 cd01470 vWA_complement_factors 99.6 1.7E-13 3.7E-18 125.5 17.3 160 5-175 2-189 (198)
24 cd01461 vWA_interalpha_trypsin 99.6 3.2E-13 7E-18 118.6 18.2 157 4-178 3-164 (171)
25 cd01469 vWA_integrins_alpha_su 99.6 2.6E-13 5.7E-18 122.9 17.9 161 6-176 3-171 (177)
26 cd01463 vWA_VGCC_like VWA Volt 99.6 2.7E-13 5.8E-18 123.6 18.0 148 4-162 14-179 (190)
27 cd01482 vWA_collagen_alphaI-XI 99.5 5E-13 1.1E-17 119.0 18.9 155 5-174 2-162 (164)
28 cd01474 vWA_ATR ATR (Anthrax T 99.5 6.6E-13 1.4E-17 120.6 18.9 155 5-176 6-166 (185)
29 cd01477 vWA_F09G8-8_type VWA F 99.5 5.4E-13 1.2E-17 123.9 18.2 148 5-160 21-183 (193)
30 PRK13406 bchD magnesium chelat 99.5 4.8E-13 1.1E-17 142.8 20.3 167 4-184 402-579 (584)
31 cd01460 vWA_midasin VWA_Midasi 99.5 7E-13 1.5E-17 129.4 17.5 170 5-185 62-257 (266)
32 cd01473 vWA_CTRP CTRP for CS 99.5 1.3E-12 2.9E-17 120.7 15.5 146 6-159 3-159 (192)
33 cd01476 VWA_integrin_invertebr 99.5 6.4E-12 1.4E-16 110.6 18.4 145 6-159 3-154 (163)
34 cd01454 vWA_norD_type norD typ 99.4 6.4E-12 1.4E-16 112.7 17.7 147 5-159 2-166 (174)
35 cd01464 vWA_subfamily VWA subf 99.4 3.6E-12 7.9E-17 114.7 16.0 147 3-160 3-159 (176)
36 cd01475 vWA_Matrilin VWA_Matri 99.4 6.5E-12 1.4E-16 117.8 18.3 157 5-176 4-169 (224)
37 TIGR00868 hCaCC calcium-activa 99.4 4.1E-12 8.9E-17 140.2 18.6 143 5-162 306-453 (863)
38 TIGR02031 BchD-ChlD magnesium 99.4 1.1E-11 2.4E-16 132.5 19.5 151 5-163 409-574 (589)
39 cd01462 VWA_YIEM_type VWA YIEM 99.4 2E-11 4.4E-16 106.6 17.8 140 5-155 2-141 (152)
40 PF00092 VWA: von Willebrand f 99.4 1.2E-11 2.6E-16 108.4 15.8 166 6-183 2-174 (178)
41 TIGR02442 Cob-chelat-sub cobal 99.3 5.4E-11 1.2E-15 128.1 20.5 152 5-163 467-626 (633)
42 cd01455 vWA_F11C1-5a_type Von 99.3 2.2E-11 4.8E-16 113.8 14.4 156 6-176 3-176 (191)
43 PF13768 VWA_3: von Willebrand 99.3 1E-10 2.2E-15 102.6 14.5 143 5-163 2-150 (155)
44 cd01481 vWA_collagen_alpha3-VI 99.3 4.4E-10 9.6E-15 101.5 18.8 153 5-174 2-163 (165)
45 PTZ00441 sporozoite surface pr 99.3 2.3E-10 5.1E-15 121.3 18.9 171 5-184 44-223 (576)
46 cd01457 vWA_ORF176_type VWA OR 99.3 2E-10 4.4E-15 105.7 16.1 153 4-162 3-166 (199)
47 COG1240 ChlD Mg-chelatase subu 99.2 7.8E-10 1.7E-14 107.2 18.3 151 5-162 80-237 (261)
48 TIGR03788 marine_srt_targ mari 99.1 1.9E-09 4.2E-14 115.1 17.9 145 4-162 272-421 (596)
49 TIGR00627 tfb4 transcription f 98.8 3.2E-07 7E-12 90.5 18.0 175 5-186 4-219 (279)
50 PF03731 Ku_N: Ku70/Ku80 N-ter 98.7 4.1E-07 8.9E-12 84.9 14.5 140 5-144 1-172 (224)
51 TIGR00578 ku70 ATP-dependent D 98.6 2.6E-06 5.7E-11 91.6 17.9 144 3-146 10-183 (584)
52 PRK10997 yieM hypothetical pro 98.4 5.6E-06 1.2E-10 87.3 16.1 139 5-157 325-466 (487)
53 PF10138 vWA-TerF-like: vWA fo 98.3 2.1E-05 4.5E-10 74.4 15.8 170 5-185 3-184 (200)
54 cd01479 Sec24-like Sec24-like: 98.3 1E-05 2.2E-10 77.9 13.9 148 5-163 5-212 (244)
55 cd01468 trunk_domain trunk dom 98.3 3.3E-05 7.2E-10 73.6 16.4 150 4-163 4-215 (239)
56 cd01478 Sec23-like Sec23-like: 98.2 3.1E-05 6.8E-10 75.8 14.1 145 5-162 5-246 (267)
57 PF04811 Sec23_trunk: Sec23/Se 98.1 5.2E-05 1.1E-09 72.2 13.9 148 5-162 5-216 (243)
58 COG4245 TerY Uncharacterized p 98.1 7.1E-05 1.5E-09 70.3 13.6 144 5-162 5-162 (207)
59 PF03850 Tfb4: Transcription f 98.0 0.00061 1.3E-08 67.3 17.8 173 5-185 3-216 (276)
60 PLN00162 transport protein sec 97.7 0.00041 8.8E-09 77.1 14.0 146 5-163 126-368 (761)
61 PF05762 VWA_CoxE: VWA domain 97.7 0.00074 1.6E-08 64.0 13.3 124 5-143 59-186 (222)
62 COG2425 Uncharacterized protei 97.6 0.0015 3.2E-08 68.4 14.4 132 6-148 275-408 (437)
63 PF11265 Med25_VWA: Mediator c 97.2 0.034 7.4E-07 53.8 17.8 157 3-166 13-202 (226)
64 COG2304 Uncharacterized protei 97.2 0.0059 1.3E-07 60.9 13.0 149 3-162 37-191 (399)
65 PTZ00395 Sec24-related protein 97.1 0.0039 8.5E-08 72.2 11.7 135 4-147 953-1155(1560)
66 KOG2487 RNA polymerase II tran 97.0 0.0094 2E-07 58.9 12.2 170 5-187 25-238 (314)
67 smart00187 INB Integrin beta s 96.9 0.059 1.3E-06 56.4 18.0 160 5-177 101-324 (423)
68 COG4867 Uncharacterized protei 96.2 0.083 1.8E-06 55.5 13.0 139 3-163 463-623 (652)
69 cd01459 vWA_copine_like VWA Co 96.2 0.29 6.3E-06 48.0 16.3 148 5-159 33-205 (254)
70 PF06707 DUF1194: Protein of u 96.1 0.15 3.2E-06 48.7 13.5 170 5-184 5-194 (205)
71 KOG1984 Vesicle coat complex C 95.3 0.16 3.5E-06 57.0 11.8 170 5-185 419-652 (1007)
72 PF02809 UIM: Ubiquitin intera 95.1 0.0056 1.2E-07 36.9 -0.2 16 321-336 2-17 (18)
73 COG5242 TFB4 RNA polymerase II 95.0 0.37 8E-06 47.0 11.9 174 6-189 23-227 (296)
74 PF02809 UIM: Ubiquitin intera 94.6 0.01 2.2E-07 35.8 0.1 16 222-237 2-17 (18)
75 smart00726 UIM Ubiquitin-inter 94.5 0.025 5.4E-07 37.1 1.8 20 222-241 1-20 (26)
76 KOG2326 DNA-binding subunit of 94.3 0.86 1.9E-05 49.7 13.8 145 1-146 2-166 (669)
77 KOG1986 Vesicle coat complex C 93.7 1.4 2.9E-05 48.9 14.0 144 6-162 124-354 (745)
78 KOG2353 L-type voltage-depende 93.2 0.83 1.8E-05 53.2 12.0 141 5-157 227-383 (1104)
79 TIGR01651 CobT cobaltochelatas 93.1 0.76 1.7E-05 50.1 11.0 59 88-148 499-569 (600)
80 PF00362 Integrin_beta: Integr 93.0 2.7 5.8E-05 44.3 14.5 167 5-184 104-334 (426)
81 PF07002 Copine: Copine; Inte 92.9 1.9 4.1E-05 39.0 11.6 120 22-145 9-146 (146)
82 COG1721 Uncharacterized conser 92.9 2.4 5.2E-05 43.9 14.0 169 4-184 225-408 (416)
83 smart00726 UIM Ubiquitin-inter 92.3 0.064 1.4E-06 35.2 1.0 19 321-339 1-19 (26)
84 PF11775 CobT_C: Cobalamin bio 92.2 4.3 9.4E-05 39.3 13.7 136 5-148 14-189 (219)
85 COG5028 Vesicle coat complex C 90.1 5.5 0.00012 44.8 13.5 146 5-162 278-477 (861)
86 PF11443 DUF2828: Domain of un 89.6 8.6 0.00019 41.8 14.3 108 3-119 340-449 (534)
87 PF09967 DUF2201: VWA-like dom 86.7 2.7 5.8E-05 36.7 7.0 93 6-119 1-95 (126)
88 cd03819 GT1_WavL_like This fam 82.7 45 0.00098 31.8 14.3 82 106-190 183-267 (355)
89 PF10221 DUF2151: Cell cycle a 82.1 14 0.0003 41.4 11.6 121 5-125 7-171 (695)
90 COG4548 NorD Nitric oxide redu 81.2 5 0.00011 43.7 7.5 136 5-148 448-602 (637)
91 PF03853 YjeF_N: YjeF-related 79.2 11 0.00025 34.2 8.3 57 89-148 8-64 (169)
92 cd03811 GT1_WabH_like This fam 77.0 34 0.00073 31.4 10.9 55 106-164 187-244 (353)
93 cd04922 ACT_AKi-HSDH-ThrA_2 AC 75.3 8.5 0.00018 28.4 5.3 37 110-146 3-39 (66)
94 KOG2327 DNA-binding subunit of 74.0 45 0.00098 36.8 12.2 142 3-146 18-184 (602)
95 cd03820 GT1_amsD_like This fam 73.6 49 0.0011 30.4 11.0 77 106-189 176-255 (348)
96 cd03794 GT1_wbuB_like This fam 72.9 52 0.0011 30.7 11.2 78 106-189 218-297 (394)
97 KOG1327 Copine [Signal transdu 72.8 64 0.0014 35.2 13.0 148 6-160 288-463 (529)
98 cd03809 GT1_mtfB_like This fam 71.6 38 0.00083 31.9 10.1 43 106-148 193-238 (365)
99 KOG1985 Vesicle coat complex C 70.8 93 0.002 35.8 14.0 144 5-160 296-499 (887)
100 cd03799 GT1_amsK_like This is 69.8 16 0.00035 34.6 7.1 80 106-190 177-259 (355)
101 cd05844 GT1_like_7 Glycosyltra 69.1 35 0.00076 32.9 9.4 53 106-162 186-241 (367)
102 cd04924 ACT_AK-Arch_2 ACT doma 68.6 15 0.00032 26.9 5.3 37 110-146 3-39 (66)
103 cd03817 GT1_UGDG_like This fam 68.5 1E+02 0.0022 28.7 12.9 80 106-190 200-282 (374)
104 COG0062 Uncharacterized conser 68.5 36 0.00077 32.6 9.0 71 89-162 32-102 (203)
105 cd04919 ACT_AK-Hom3_2 ACT doma 67.9 15 0.00033 27.2 5.3 37 110-146 3-39 (66)
106 PRK15427 colanic acid biosynth 67.8 10 0.00022 38.8 5.6 52 108-163 222-276 (406)
107 KOG2941 Beta-1,4-mannosyltrans 67.7 21 0.00046 37.4 7.7 63 103-175 8-70 (444)
108 cd03823 GT1_ExpE7_like This fa 66.2 1.1E+02 0.0023 28.6 11.7 43 106-148 189-232 (359)
109 cd03821 GT1_Bme6_like This fam 66.2 32 0.0007 32.0 8.3 56 106-163 201-259 (375)
110 cd03813 GT1_like_3 This family 65.6 13 0.00029 38.7 6.0 58 106-163 291-351 (475)
111 cd03801 GT1_YqgM_like This fam 64.8 53 0.0012 30.1 9.3 80 106-190 197-279 (374)
112 PF00731 AIRC: AIR carboxylase 64.8 33 0.00073 31.3 7.7 78 109-190 2-82 (150)
113 cd03795 GT1_like_4 This family 64.7 44 0.00096 31.7 9.0 52 106-163 189-241 (357)
114 cd04916 ACT_AKiii-YclM-BS_2 AC 64.6 20 0.00043 26.4 5.3 37 110-146 3-39 (66)
115 PF03358 FMN_red: NADPH-depend 63.3 16 0.00034 31.7 5.2 57 108-164 1-70 (152)
116 PF12257 DUF3608: Protein of u 62.0 25 0.00055 35.3 6.9 65 84-148 202-272 (281)
117 PF00534 Glycos_transf_1: Glyc 61.4 40 0.00087 29.0 7.4 133 104-243 11-164 (172)
118 cd04962 GT1_like_5 This family 61.0 1.6E+02 0.0035 28.3 12.2 77 107-190 196-274 (371)
119 cd03807 GT1_WbnK_like This fam 60.4 1.4E+02 0.0031 27.6 11.9 50 107-160 192-244 (365)
120 PLN02948 phosphoribosylaminoim 59.3 1.4E+02 0.003 32.8 12.5 76 105-184 408-483 (577)
121 KOG3768 DEAD box RNA helicase 58.7 50 0.0011 36.8 8.8 95 5-99 3-101 (888)
122 cd04868 ACT_AK-like ACT domain 57.7 33 0.00071 23.7 5.2 36 111-146 3-38 (60)
123 COG2718 Uncharacterized conser 56.7 99 0.0022 32.7 10.3 110 4-132 246-363 (423)
124 TIGR03088 stp2 sugar transfera 55.8 1.4E+02 0.0029 29.3 10.9 77 107-190 193-276 (374)
125 cd03798 GT1_wlbH_like This fam 55.5 50 0.0011 30.5 7.4 54 106-163 200-256 (377)
126 cd04918 ACT_AK1-AT_2 ACT domai 54.9 36 0.00078 25.8 5.3 38 110-148 3-40 (65)
127 COG1432 Uncharacterized conser 53.6 36 0.00078 31.6 6.1 58 80-148 89-146 (181)
128 PF02441 Flavoprotein: Flavopr 53.4 22 0.00047 30.7 4.3 34 108-143 1-34 (129)
129 cd01840 SGNH_hydrolase_yrhL_li 53.0 1.5E+02 0.0033 25.7 10.5 71 71-145 16-88 (150)
130 TIGR02877 spore_yhbH sporulati 52.3 1.4E+02 0.003 31.4 10.5 138 4-163 202-348 (371)
131 cd03814 GT1_like_2 This family 52.3 2E+02 0.0044 26.9 11.9 41 108-148 197-239 (364)
132 TIGR00197 yjeF_nterm yjeF N-te 51.4 56 0.0012 30.8 7.1 52 90-146 31-82 (205)
133 PRK05325 hypothetical protein; 50.2 1.3E+02 0.0029 31.8 10.1 138 4-164 222-370 (401)
134 cd04951 GT1_WbdM_like This fam 50.2 80 0.0017 30.0 8.1 77 106-189 186-265 (360)
135 cd04949 GT1_gtfA_like This fam 49.8 2.2E+02 0.0047 27.8 11.2 53 107-163 203-258 (372)
136 PLN03050 pyridoxine (pyridoxam 49.7 58 0.0013 31.8 7.1 35 107-143 60-94 (246)
137 cd03796 GT1_PIG-A_like This fa 48.9 81 0.0018 31.6 8.3 55 106-164 191-248 (398)
138 cd03792 GT1_Trehalose_phosphor 48.6 2.8E+02 0.006 27.3 12.8 85 106-190 188-277 (372)
139 PF00448 SRP54: SRP54-type pro 48.5 63 0.0014 30.2 6.9 55 109-163 2-56 (196)
140 TIGR03449 mycothiol_MshA UDP-N 48.5 2.7E+02 0.0059 27.6 11.9 57 107-163 218-280 (405)
141 cd04921 ACT_AKi-HSDH-ThrA-like 48.1 54 0.0012 25.2 5.5 36 111-146 4-39 (80)
142 TIGR02690 resist_ArsH arsenica 47.5 41 0.00089 32.4 5.6 70 104-175 23-99 (219)
143 KOG2935 Ataxin 3/Josephin [Gen 47.5 13 0.00027 37.1 2.1 34 291-336 217-250 (315)
144 cd04923 ACT_AK-LysC-DapG-like_ 46.5 54 0.0012 23.5 5.0 34 111-144 3-36 (63)
145 PF00763 THF_DHG_CYH: Tetrahyd 46.1 1.2E+02 0.0025 26.1 7.7 55 122-178 44-100 (117)
146 cd04936 ACT_AKii-LysC-BS-like_ 46.1 56 0.0012 23.4 5.0 34 111-144 3-36 (63)
147 cd04892 ACT_AK-like_2 ACT doma 45.9 57 0.0012 23.0 5.0 36 111-146 3-38 (65)
148 cd03822 GT1_ecORF704_like This 44.8 2.7E+02 0.0059 26.1 12.4 42 106-147 183-227 (366)
149 cd04915 ACT_AK-Ectoine_2 ACT d 44.7 62 0.0013 24.8 5.2 39 109-148 3-41 (66)
150 PF01882 DUF58: Protein of unk 44.1 51 0.0011 26.0 4.8 40 4-43 41-80 (86)
151 PF10293 DUF2405: Domain of un 43.8 35 0.00075 31.2 4.3 29 220-248 112-143 (157)
152 PLN03049 pyridoxine (pyridoxam 43.2 92 0.002 33.3 7.9 56 90-148 43-98 (462)
153 PF01936 NYN: NYN domain; Int 42.8 43 0.00093 28.4 4.5 49 85-144 79-127 (146)
154 TIGR01162 purE phosphoribosyla 42.7 1.4E+02 0.003 27.6 8.0 27 122-148 39-65 (156)
155 PRK15045 cellulose biosynthesi 42.5 1.7E+02 0.0037 31.9 9.7 116 40-163 43-165 (519)
156 PLN02726 dolichyl-phosphate be 42.1 1.4E+02 0.003 27.7 8.2 32 108-139 94-125 (243)
157 cd03805 GT1_ALG2_like This fam 41.6 1.2E+02 0.0026 29.7 8.0 56 106-161 209-274 (392)
158 cd03364 TOPRIM_DnaG_primases T 41.3 46 0.001 26.1 4.2 37 107-144 43-79 (79)
159 COG3552 CoxE Protein containin 40.5 2.3E+02 0.0049 30.0 9.9 114 5-135 220-340 (395)
160 PRK14179 bifunctional 5,10-met 39.9 3.8E+02 0.0081 27.0 11.2 75 109-185 34-110 (284)
161 cd06167 LabA_like LabA_like pr 39.8 78 0.0017 27.3 5.7 78 68-159 53-143 (149)
162 cd03812 GT1_CapH_like This fam 39.4 1.6E+02 0.0035 28.0 8.4 132 106-244 190-338 (358)
163 TIGR02095 glgA glycogen/starch 38.8 1.7E+02 0.0037 30.3 9.0 53 107-161 290-343 (473)
164 TIGR00288 conserved hypothetic 38.8 2.4E+02 0.0051 26.2 8.9 74 81-176 85-158 (160)
165 COG5148 RPN10 26S proteasome r 38.8 31 0.00066 33.3 3.1 28 352-379 173-215 (243)
166 PRK15484 lipopolysaccharide 1, 38.6 1.7E+02 0.0037 29.4 8.8 41 107-147 192-235 (380)
167 cd05009 SIS_GlmS_GlmD_2 SIS (S 36.8 1E+02 0.0022 26.2 6.0 24 120-143 73-96 (153)
168 PRK10307 putative glycosyl tra 36.4 1.3E+02 0.0028 30.2 7.5 52 108-163 229-282 (412)
169 COG1553 DsrE Uncharacterized c 36.0 1.3E+02 0.0028 27.0 6.4 62 81-145 11-81 (126)
170 COG3660 Predicted nucleoside-d 35.9 1.1E+02 0.0023 31.3 6.5 78 79-161 132-218 (329)
171 PRK14177 bifunctional 5,10-met 35.5 3.6E+02 0.0079 27.2 10.3 91 91-185 19-111 (284)
172 PF13911 AhpC-TSA_2: AhpC/TSA 35.5 63 0.0014 26.9 4.3 51 125-184 2-52 (115)
173 PF13477 Glyco_trans_4_2: Glyc 34.9 82 0.0018 26.3 5.0 27 122-148 10-36 (139)
174 PF12646 DUF3783: Domain of un 34.6 1E+02 0.0023 23.4 5.0 49 109-162 2-50 (58)
175 PF13362 Toprim_3: Toprim doma 34.2 1.2E+02 0.0025 24.6 5.6 42 105-146 39-81 (96)
176 PRK14194 bifunctional 5,10-met 33.2 5.4E+02 0.012 26.2 11.6 93 89-186 18-112 (301)
177 PRK06756 flavodoxin; Provision 33.1 70 0.0015 27.8 4.4 40 108-147 2-41 (148)
178 TIGR03567 FMN_reduc_SsuE FMN r 31.8 2.2E+02 0.0048 25.6 7.5 38 109-146 1-40 (171)
179 cd04905 ACT_CM-PDT C-terminal 31.8 1.1E+02 0.0023 24.0 4.8 44 100-143 34-77 (80)
180 PRK12553 ATP-dependent Clp pro 31.6 2.2E+02 0.0048 26.9 7.8 70 77-148 36-105 (207)
181 PRK08105 flavodoxin; Provision 31.4 57 0.0012 29.1 3.6 38 109-146 3-40 (149)
182 PF04244 DPRP: Deoxyribodipyri 31.4 15 0.00033 35.4 -0.1 72 103-186 37-111 (224)
183 PTZ00260 dolichyl-phosphate be 31.4 5.5E+02 0.012 25.8 11.8 95 25-134 84-189 (333)
184 PF00483 NTP_transferase: Nucl 31.2 1.6E+02 0.0034 27.3 6.6 109 50-176 2-112 (248)
185 PRK10569 NAD(P)H-dependent FMN 31.2 97 0.0021 28.9 5.2 66 108-175 1-75 (191)
186 PRK10565 putative carbohydrate 30.9 1.7E+02 0.0038 31.5 7.7 40 107-148 60-99 (508)
187 cd03791 GT1_Glycogen_synthase_ 30.8 2.9E+02 0.0063 28.3 9.1 54 106-161 294-348 (476)
188 COG1105 FruK Fructose-1-phosph 30.6 1.4E+02 0.0031 30.5 6.6 111 49-177 130-244 (310)
189 cd04946 GT1_AmsK_like This fam 30.4 5.7E+02 0.012 26.0 11.1 51 109-161 231-284 (407)
190 PRK14188 bifunctional 5,10-met 30.3 5.4E+02 0.012 26.0 10.7 76 109-186 34-111 (296)
191 cd07041 STAS_RsbR_RsbS_like Su 30.3 1.4E+02 0.0031 24.2 5.6 67 80-148 15-85 (109)
192 cd04912 ACT_AKiii-LysC-EC-like 30.3 1.4E+02 0.0031 23.2 5.3 35 111-145 4-38 (75)
193 PRK03692 putative UDP-N-acetyl 30.2 2.1E+02 0.0044 28.0 7.5 79 88-176 88-166 (243)
194 cd06844 STAS Sulphate Transpor 30.2 1.2E+02 0.0027 24.5 5.1 67 80-148 13-83 (100)
195 PF00117 GATase: Glutamine ami 30.0 58 0.0013 29.3 3.4 48 110-162 45-93 (192)
196 KOG2199 Signal transducing ada 29.6 23 0.00049 37.5 0.8 20 320-339 163-182 (462)
197 PRK14169 bifunctional 5,10-met 29.3 6E+02 0.013 25.6 11.5 76 109-186 32-109 (282)
198 TIGR02826 RNR_activ_nrdG3 anae 29.3 1.3E+02 0.0029 26.9 5.6 47 110-162 64-110 (147)
199 PRK05569 flavodoxin; Provision 29.3 1E+02 0.0022 26.4 4.7 40 109-148 3-42 (141)
200 PRK14175 bifunctional 5,10-met 29.2 4.9E+02 0.011 26.2 10.1 91 91-186 19-111 (286)
201 TIGR02918 accessory Sec system 29.0 1.6E+02 0.0034 31.6 7.0 51 109-163 320-373 (500)
202 cd04955 GT1_like_6 This family 29.0 2.2E+02 0.0048 27.0 7.5 40 108-148 193-233 (363)
203 TIGR00493 clpP ATP-dependent C 28.9 3.1E+02 0.0067 25.6 8.1 69 78-148 28-96 (191)
204 PRK14184 bifunctional 5,10-met 28.8 6.2E+02 0.013 25.5 11.6 76 109-186 33-110 (286)
205 PF13662 Toprim_4: Toprim doma 28.5 36 0.00078 26.8 1.6 36 107-143 46-81 (81)
206 COG4547 CobT Cobalamin biosynt 28.5 2.5E+02 0.0054 30.7 8.1 135 6-148 416-590 (620)
207 TIGR00750 lao LAO/AO transport 28.3 2.1E+02 0.0046 28.2 7.4 52 95-147 21-73 (300)
208 PF13727 CoA_binding_3: CoA-bi 28.3 2.8E+02 0.0061 23.8 7.4 81 87-174 86-175 (175)
209 cd07017 S14_ClpP_2 Caseinolyti 28.3 2.9E+02 0.0063 25.0 7.7 68 79-148 12-79 (171)
210 cd03808 GT1_cap1E_like This fa 28.3 4.7E+02 0.01 24.0 13.3 43 106-148 186-231 (359)
211 COG0528 PyrH Uridylate kinase 27.9 2.5E+02 0.0055 27.7 7.5 48 5-58 5-56 (238)
212 cd03800 GT1_Sucrose_synthase T 27.9 2.9E+02 0.0062 26.7 8.1 57 107-163 219-280 (398)
213 smart00275 G_alpha G protein a 27.8 6.6E+02 0.014 25.5 12.4 51 4-58 209-261 (342)
214 PLN02918 pyridoxine (pyridoxam 27.5 1.8E+02 0.0038 32.0 7.1 54 90-146 119-172 (544)
215 PF02780 Transketolase_C: Tran 27.4 1.1E+02 0.0024 25.9 4.5 52 108-162 10-61 (124)
216 PRK11145 pflA pyruvate formate 27.0 1.4E+02 0.003 28.2 5.6 51 110-161 73-123 (246)
217 PF13768 VWA_3: von Willebrand 27.0 1.9E+02 0.0042 24.8 6.1 12 136-147 34-45 (155)
218 PRK05568 flavodoxin; Provision 26.9 1.2E+02 0.0027 25.8 4.8 40 109-148 3-42 (142)
219 PRK06703 flavodoxin; Provision 26.9 97 0.0021 27.0 4.2 39 109-147 3-41 (151)
220 KOG4465 Uncharacterized conser 26.7 2.9E+02 0.0063 29.3 8.0 116 6-138 430-552 (598)
221 PRK05749 3-deoxy-D-manno-octul 26.6 6.8E+02 0.015 25.3 11.0 53 108-162 233-285 (425)
222 PRK14190 bifunctional 5,10-met 26.1 6.9E+02 0.015 25.2 11.3 76 109-186 34-111 (284)
223 PRK04155 chaperone protein Hch 25.9 2.7E+02 0.0058 27.9 7.6 26 121-146 75-100 (287)
224 PRK14180 bifunctional 5,10-met 25.8 7E+02 0.015 25.1 11.1 77 108-186 32-110 (282)
225 cd04908 ACT_Bt0572_1 N-termina 25.6 1.4E+02 0.0031 22.3 4.4 32 108-143 2-33 (66)
226 PRK14170 bifunctional 5,10-met 25.4 7.1E+02 0.015 25.1 10.9 76 109-186 33-110 (284)
227 cd04937 ACT_AKi-DapG-BS_2 ACT 25.4 1.8E+02 0.0038 21.8 4.9 34 110-143 3-36 (64)
228 TIGR02886 spore_II_AA anti-sig 25.2 2.5E+02 0.0053 22.7 6.1 67 80-148 13-83 (106)
229 PF00574 CLP_protease: Clp pro 25.2 1.8E+02 0.004 26.2 5.8 66 79-148 19-86 (182)
230 PF07745 Glyco_hydro_53: Glyco 25.2 2.5E+02 0.0055 28.8 7.3 62 82-148 52-135 (332)
231 PRK09004 FMN-binding protein M 25.1 95 0.0021 27.6 3.8 36 109-144 3-38 (146)
232 PRK14176 bifunctional 5,10-met 25.1 7.2E+02 0.016 25.1 12.1 76 109-186 40-117 (287)
233 PRK14512 ATP-dependent Clp pro 25.1 3.8E+02 0.0082 25.2 8.1 68 79-148 26-93 (197)
234 PF09875 DUF2102: Uncharacteri 25.1 1.7E+02 0.0038 25.4 5.2 64 112-176 2-65 (104)
235 cd06543 GH18_PF-ChiA-like PF-C 25.0 2.4E+02 0.0053 28.2 7.1 91 50-144 70-176 (294)
236 PRK09271 flavodoxin; Provision 25.0 1.3E+02 0.0028 26.8 4.7 39 108-146 1-39 (160)
237 KOG2228 Origin recognition com 25.0 4.8E+02 0.01 27.6 9.2 92 85-184 115-212 (408)
238 PRK14174 bifunctional 5,10-met 25.0 7E+02 0.015 25.2 10.4 76 109-186 33-110 (295)
239 PRK14171 bifunctional 5,10-met 24.9 7.3E+02 0.016 25.1 11.0 75 109-185 34-110 (288)
240 PRK07765 para-aminobenzoate sy 24.8 83 0.0018 29.8 3.6 38 111-148 50-88 (214)
241 cd03806 GT1_ALG11_like This fa 24.8 2.8E+02 0.006 28.5 7.7 81 107-189 236-327 (419)
242 PRK04460 nickel responsive reg 24.7 1.3E+02 0.0029 27.0 4.7 38 16-54 21-59 (137)
243 PF02635 DrsE: DsrE/DsrF-like 24.7 2.5E+02 0.0055 22.6 6.1 26 123-148 18-46 (122)
244 COG1763 MobB Molybdopterin-gua 24.6 1.3E+02 0.0028 27.7 4.7 40 108-147 2-41 (161)
245 PRK10792 bifunctional 5,10-met 24.6 6.8E+02 0.015 25.2 10.1 76 109-186 35-112 (285)
246 PLN02683 pyruvate dehydrogenas 24.6 2.2E+02 0.0047 29.3 6.8 48 124-176 242-289 (356)
247 PRK13981 NAD synthetase; Provi 24.5 8.9E+02 0.019 26.0 12.3 92 19-146 251-345 (540)
248 COG0166 Pgi Glucose-6-phosphat 24.4 4.9E+02 0.011 27.9 9.5 87 88-180 91-180 (446)
249 PRK14191 bifunctional 5,10-met 24.4 7.4E+02 0.016 25.0 10.5 75 109-185 33-109 (285)
250 cd08576 GDPD_like_SMaseD_PLD G 24.3 7.3E+02 0.016 24.8 10.8 90 76-166 40-143 (265)
251 TIGR00725 conserved hypothetic 24.2 2.9E+02 0.0063 25.0 6.9 59 109-175 3-63 (159)
252 PRK14167 bifunctional 5,10-met 24.2 7.6E+02 0.017 25.0 11.1 76 109-186 33-110 (297)
253 PF03028 Dynein_heavy: Dynein 24.0 42 0.0009 37.2 1.6 38 111-148 119-156 (707)
254 PTZ00062 glutaredoxin; Provisi 24.0 3.3E+02 0.0071 26.0 7.5 97 51-162 66-164 (204)
255 PRK14489 putative bifunctional 24.0 1.3E+02 0.0028 30.8 5.1 51 121-174 186-240 (366)
256 PRK14189 bifunctional 5,10-met 23.9 7.6E+02 0.016 24.9 11.7 77 109-187 34-112 (285)
257 COG1609 PurR Transcriptional r 23.8 7.4E+02 0.016 24.7 12.7 120 7-146 140-274 (333)
258 cd03413 CbiK_C Anaerobic cobal 23.8 3.6E+02 0.0077 22.7 6.9 59 111-175 3-64 (103)
259 PF06415 iPGM_N: BPG-independe 23.6 4.9E+02 0.011 25.4 8.6 35 114-148 37-72 (223)
260 KOG2585 Uncharacterized conser 23.5 4.2E+02 0.009 28.6 8.7 53 109-164 267-319 (453)
261 PRK14166 bifunctional 5,10-met 23.5 7.6E+02 0.017 24.9 10.2 76 109-186 32-109 (282)
262 KOG1549 Cysteine desulfurase N 23.3 7E+02 0.015 26.8 10.3 66 89-159 113-178 (428)
263 COG0426 FpaA Uncharacterized f 23.3 3E+02 0.0064 29.1 7.5 49 109-159 248-296 (388)
264 cd03409 Chelatase_Class_II Cla 23.1 2.7E+02 0.0057 22.2 5.8 58 115-176 8-68 (101)
265 cd00859 HisRS_anticodon HisRS 23.0 89 0.0019 23.6 2.9 25 121-145 13-37 (91)
266 PF00072 Response_reg: Respons 23.0 2.6E+02 0.0057 21.8 5.8 66 111-184 46-111 (112)
267 PRK00923 sirohydrochlorin coba 22.9 3.6E+02 0.0077 22.9 6.9 55 115-175 10-68 (126)
268 PRK14173 bifunctional 5,10-met 22.7 3.2E+02 0.0069 27.6 7.4 74 109-184 31-106 (287)
269 PF03808 Glyco_tran_WecB: Glyc 22.7 5.8E+02 0.013 23.1 8.6 75 89-171 32-106 (172)
270 PRK14168 bifunctional 5,10-met 22.6 8.2E+02 0.018 24.8 11.2 77 109-187 35-113 (297)
271 cd02037 MRP-like MRP (Multiple 22.4 3.7E+02 0.0079 23.7 7.1 63 111-176 95-168 (169)
272 cd04880 ACT_AAAH-PDT-like ACT 22.2 99 0.0022 23.7 3.0 44 100-143 32-75 (75)
273 TIGR00377 ant_ant_sig anti-ant 22.2 2.4E+02 0.0051 22.7 5.4 38 111-148 46-87 (108)
274 cd04891 ACT_AK-LysC-DapG-like_ 22.0 2.6E+02 0.0056 19.3 5.0 29 120-148 10-38 (61)
275 cd01025 TOPRIM_recR TOPRIM_rec 21.9 2E+02 0.0043 25.1 5.1 53 96-149 46-98 (112)
276 TIGR02370 pyl_corrinoid methyl 21.8 6E+02 0.013 23.6 8.7 84 82-174 49-142 (197)
277 PLN02897 tetrahydrofolate dehy 21.8 9.2E+02 0.02 25.1 11.4 76 109-186 88-165 (345)
278 cd04913 ACT_AKii-LysC-BS-like_ 21.7 2.1E+02 0.0046 20.8 4.7 29 119-147 10-38 (75)
279 PF05762 VWA_CoxE: VWA domain 21.6 3E+02 0.0065 26.0 6.7 70 80-149 23-101 (222)
280 PRK09922 UDP-D-galactose:(gluc 21.5 2.8E+02 0.0061 27.3 6.8 54 108-166 180-236 (359)
281 PRK03767 NAD(P)H:quinone oxido 21.5 1.5E+02 0.0032 27.4 4.5 39 109-147 3-42 (200)
282 cd03802 GT1_AviGT4_like This f 21.5 3.3E+02 0.0071 25.6 7.0 42 105-148 168-209 (335)
283 TIGR01753 flav_short flavodoxi 21.4 1.3E+02 0.0029 25.2 3.9 38 110-147 1-38 (140)
284 PRK14192 bifunctional 5,10-met 21.4 8.2E+02 0.018 24.4 11.1 75 109-185 35-111 (283)
285 PRK14974 cell division protein 21.4 5.7E+02 0.012 26.2 9.0 56 107-162 139-194 (336)
286 cd04935 ACT_AKiii-DAPDC_1 ACT 21.3 2.8E+02 0.0061 21.8 5.5 31 115-145 8-38 (75)
287 TIGR03728 glyco_access_1 glyco 21.3 2.5E+02 0.0055 28.2 6.2 50 124-175 3-65 (265)
288 cd04795 SIS SIS domain. SIS (S 21.3 2E+02 0.0044 21.9 4.7 22 122-143 60-81 (87)
289 cd05017 SIS_PGI_PMI_1 The memb 21.2 4.9E+02 0.011 21.7 7.9 44 122-176 56-99 (119)
290 cd03825 GT1_wcfI_like This fam 21.2 1.6E+02 0.0036 27.9 4.9 39 109-147 2-41 (365)
291 PRK14172 bifunctional 5,10-met 21.1 8.5E+02 0.018 24.5 10.0 75 109-185 34-110 (278)
292 PF07739 TipAS: TipAS antibiot 21.0 67 0.0014 26.6 1.9 17 366-382 51-67 (118)
293 cd08551 Fe-ADH iron-containing 20.9 3.4E+02 0.0073 27.4 7.3 38 110-148 54-91 (370)
294 cd01335 Radical_SAM Radical SA 20.8 3.8E+02 0.0082 22.8 6.7 53 106-161 43-97 (204)
295 PRK00726 murG undecaprenyldiph 20.6 1.4E+02 0.0031 29.2 4.4 23 124-146 17-39 (357)
296 PF10740 DUF2529: Protein of u 20.6 1.6E+02 0.0034 27.8 4.4 35 106-143 81-115 (172)
297 cd01542 PBP1_TreR_like Ligand- 20.6 6.4E+02 0.014 22.8 9.0 108 21-148 94-212 (259)
298 cd01746 GATase1_CTP_Synthase T 20.5 3.3E+02 0.0072 26.3 6.8 49 110-163 58-106 (235)
299 PF14275 DUF4362: Domain of un 20.5 1.3E+02 0.0029 25.7 3.6 32 140-172 4-35 (98)
300 KOG3572 Uncharacterized conser 20.5 1.9E+02 0.0042 35.1 5.9 65 84-148 428-498 (1701)
301 PRK14186 bifunctional 5,10-met 20.5 9.1E+02 0.02 24.5 11.4 77 109-187 34-112 (297)
302 PLN02681 proline dehydrogenase 20.4 2.3E+02 0.005 30.3 6.2 37 113-153 88-124 (455)
303 PRK00170 azoreductase; Reviewe 20.3 2E+02 0.0044 26.0 5.1 41 108-148 2-47 (201)
304 PF04055 Radical_SAM: Radical 20.3 3E+02 0.0065 22.8 5.9 39 121-160 125-164 (166)
305 PF00106 adh_short: short chai 20.3 5.3E+02 0.012 21.8 8.6 65 88-163 11-75 (167)
306 PLN02871 UDP-sulfoquinovose:DA 20.3 1.9E+02 0.0042 29.9 5.5 42 105-146 56-101 (465)
307 PF05378 Hydant_A_N: Hydantoin 20.1 3.2E+02 0.007 25.1 6.4 39 121-160 132-173 (176)
308 smart00727 STI1 Heat shock cha 20.0 78 0.0017 21.9 1.8 17 347-363 17-33 (41)
309 cd00001 PTS_IIB_man PTS_IIB, P 20.0 2.1E+02 0.0045 25.9 5.0 61 76-147 45-105 (151)
No 1
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-85 Score=607.98 Aligned_cols=240 Identities=63% Similarity=0.966 Sum_probs=227.4
Q ss_pred CCcceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc
Q 016164 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE 80 (394)
Q Consensus 1 m~lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~ 80 (394)
||||+||||||||+|||||||.||||+||+++|+.+|..|+++||||+||||++++..++||+|||+|+++|+++||.++
T Consensus 1 MvlEatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~d~gkils~lh~i~ 80 (259)
T KOG2884|consen 1 MVLEATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTSDRGKILSKLHGIQ 80 (259)
T ss_pred CCcceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccccchHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
++|+++|.+||++|+++||||++|+|++|||+|+|||+.+++++|++++|+|||++|.||||.||+.. +|+++|.+|++
T Consensus 81 ~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~-~~~e~l~~fid 159 (259)
T KOG2884|consen 81 PHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAE-NNTEKLFEFID 159 (259)
T ss_pred cCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEecccc-ccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 78999999999
Q ss_pred HhcC-CCCcEEEEcCCCCchhhhhhhcCccccCCCCCCCchhHhHHHhhhcCCCCCccCCCCCCCHHHHHHHHhcHHHHH
Q 016164 161 AVNN-NDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEER 239 (394)
Q Consensus 161 ~vn~-~~~S~~v~vp~g~~lLsD~l~sspi~~g~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~Alr~SlEEe~ 239 (394)
++|+ +++||+|+||||+ +|+|+|++|||+.||+ |++ +++.++.|..|+|||||++|||||||||+||||||
T Consensus 160 a~N~~~~gshlv~Vppg~-~L~d~l~ssPii~ge~--g~a-----~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEEer 231 (259)
T KOG2884|consen 160 ALNGKGDGSHLVSVPPGP-LLSDALLSSPIIQGED--GGA-----AAGLGANGMDFEFGVDPEDDPELALALRLSMEEER 231 (259)
T ss_pred HhcCCCCCceEEEeCCCc-cHHHHhhcCceeccCc--ccc-----cccccccccccccCCCcccCHHHHHHHHhhHHHHH
Confidence 9999 7899999999999 8999999999999987 222 12344556789999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 016164 240 ARQEAAAKRA 249 (394)
Q Consensus 240 ~rq~~~~~~~ 249 (394)
+|||++++++
T Consensus 232 ~rQe~aa~~~ 241 (259)
T KOG2884|consen 232 ARQERAAQKA 241 (259)
T ss_pred HHHHHHhhhc
Confidence 9999776543
No 2
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-70 Score=497.48 Aligned_cols=233 Identities=49% Similarity=0.730 Sum_probs=221.4
Q ss_pred CCcceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc
Q 016164 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE 80 (394)
Q Consensus 1 m~lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~ 80 (394)
||||+||++||||+||+||||.||||+||+++|..++.+||+.||+|+||||+.++..+.||+|||.+++||+++||.+.
T Consensus 1 mvlEatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~~~gkilt~lhd~~ 80 (243)
T COG5148 1 MVLEATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTKQRGKILTFLHDIR 80 (243)
T ss_pred CCcceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchhhhhHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
+.|+.++..+|++|+++||||++|.+++|||+|||||+.+++++|+.+||+||||||+|+||.||+.. |.+-|..|++
T Consensus 81 ~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkknnVAidii~fGE~~--n~~~l~efId 158 (243)
T COG5148 81 LHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGEAA--NMAGLFEFID 158 (243)
T ss_pred ccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhhhh--hhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999975 8999999999
Q ss_pred HhcCCCCcEEEEcCCCCchhhhhhhcCccccCCCCCCCchhHhHHHhhhcCCCCCccCCCCCCCHHHHHHHHhcHHHHHH
Q 016164 161 AVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERA 240 (394)
Q Consensus 161 ~vn~~~~S~~v~vp~g~~lLsD~l~sspi~~g~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~Alr~SlEEe~~ 240 (394)
.+|+.+.||++++||+|.+|+++|-+|||-+ | .-|+.+.||||||||+|||||||||+||||||+
T Consensus 159 a~N~~dsshl~~~~P~p~ll~~~~~~spig~--g-------------~~g~~~~~e~gvDp~lDpELA~AlrLSmeEek~ 223 (243)
T COG5148 159 ATNFSDSSHLEVKPPNPELLDRVLPFSPIGQ--G-------------VVGDDLQLEYGVDPNLDPELAEALRLSMEEEKK 223 (243)
T ss_pred hhccccceeeEecCCCHHHHHhhccCCcccc--c-------------cccCccceecCCCCCCCHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999832 2 112334799999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 016164 241 RQEAAAKRAA 250 (394)
Q Consensus 241 rq~~~~~~~~ 250 (394)
||+..+++..
T Consensus 224 rQe~~~qk~~ 233 (243)
T COG5148 224 RQEVAAQKSS 233 (243)
T ss_pred HHHHHHHhhh
Confidence 9998876643
No 3
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=100.00 E-value=5.4e-56 Score=410.37 Aligned_cols=187 Identities=65% Similarity=0.983 Sum_probs=184.0
Q ss_pred CCcceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc
Q 016164 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE 80 (394)
Q Consensus 1 m~lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~ 80 (394)
|++||+|||||+|+||+++||+||||++|+++++.|+.+||++||+++||||+|+|+.+++++|||+|+++++.+|+.++
T Consensus 1 m~~ea~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~i~ 80 (187)
T cd01452 1 MVLEATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQ 80 (187)
T ss_pred CCceEEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
++|+++|++||++|+.+|||++++.+++|||+|++|+.++|++++++++++|||+||+|+|||||+.. +|.+||++|++
T Consensus 81 ~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~-~~~~~l~~~~~ 159 (187)
T cd01452 81 PKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEID-DNTEKLTAFID 159 (187)
T ss_pred CCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCC-CCHHHHHHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999998 89999999999
Q ss_pred HhcCCCCcEEEEcCCCCchhhhhhhcCc
Q 016164 161 AVNNNDSSHLVHVPPGPNALSDVLLSTP 188 (394)
Q Consensus 161 ~vn~~~~S~~v~vp~g~~lLsD~l~ssp 188 (394)
++|++++|||++||+|+++|||+|++||
T Consensus 160 ~~~~~~~s~~~~~~~~~~~lsd~~~~s~ 187 (187)
T cd01452 160 AVNGKDGSHLVSVPPGENLLSDALLSSP 187 (187)
T ss_pred HhcCCCCceEEEeCCCCchhHHHhhcCC
Confidence 9999999999999999999999999998
No 4
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=100.00 E-value=8.1e-39 Score=297.21 Aligned_cols=169 Identities=21% Similarity=0.305 Sum_probs=154.7
Q ss_pred EEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc---cccCcc
Q 016164 9 CIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL---EIGGEL 85 (394)
Q Consensus 9 vIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l---~~~G~~ 85 (394)
|||+|+||+++||+||||.+++++++.|+++||+|||++|||||+|+++.+++++++++++.+|+++|+++ .|.|++
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsgn~~~h~~~L~~~~~~~~~G~~ 80 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSGNPQEHIEALKKLRKLEPSGEP 80 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCCCHHHHHHHHHHhccCCCCCCh
Confidence 68999999999999999999999999999999999999999999999999999999999999999988765 699999
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCC
Q 016164 86 NLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNN 165 (394)
Q Consensus 86 sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~ 165 (394)
+|+|||++|+.+|||+|.+ ..++||+++||..++||+++++++++||++||+|+||||++|++ +|+++++.|+
T Consensus 81 SLqN~Le~A~~~L~~~p~~-~srEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI~laaEv~----I~k~i~~~T~-- 153 (193)
T PF04056_consen 81 SLQNGLEMARSSLKHMPSH-GSREILVIFGSLTTCDPGDIHETIESLKKENIRVSVISLAAEVY----ICKKICKETG-- 153 (193)
T ss_pred hHHHHHHHHHHHHhhCccc-cceEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEEEEhHHHH----HHHHHHHhhC--
Confidence 9999999999999999754 45566777799999999999999999999999999999999996 9999999995
Q ss_pred CCcEEEEcCCCCchhhhhhhcC
Q 016164 166 DSSHLVHVPPGPNALSDVLLST 187 (394)
Q Consensus 166 ~~S~~v~vp~g~~lLsD~l~ss 187 (394)
|.|.|.+... | |.|.|+..
T Consensus 154 -G~y~V~lde~-H-~~~lL~~~ 172 (193)
T PF04056_consen 154 -GTYGVILDED-H-FKELLMEH 172 (193)
T ss_pred -CEEEEecCHH-H-HHHHHHhh
Confidence 4777777665 5 88988766
No 5
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=1.2e-31 Score=262.07 Aligned_cols=174 Identities=20% Similarity=0.284 Sum_probs=155.9
Q ss_pred cceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc-c
Q 016164 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE-I 81 (394)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~-~ 81 (394)
...++|+||.|++|...||+|+|+..+.++++.|+.+||+|||++|+|||+++++.+.+++.+|+|+..++.+|.++. +
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltgnp~~hI~aL~~~~~~ 139 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTGNPRIHIHALKGLTEC 139 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcCCHHHHHHHHhccccc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999885 9
Q ss_pred cCcccHHHHHHHHHHHhhhcCCCCCCeEEE-EEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHRQNKKQQQRII-VFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr~~k~~~~RIV-lFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
.|+++|+|||++|+..|||.|. |..|.| |+++|..++||+++++++++||+.||||++||+.+++. +|+.+++
T Consensus 140 ~g~fSLqNaLe~a~~~Lk~~p~--H~sREVLii~sslsT~DPgdi~~tI~~lk~~kIRvsvIgLsaEv~----icK~l~k 213 (378)
T KOG2807|consen 140 SGDFSLQNALELAREVLKHMPG--HVSREVLIIFSSLSTCDPGDIYETIDKLKAYKIRVSVIGLSAEVF----ICKELCK 213 (378)
T ss_pred CCChHHHHHHHHHHHHhcCCCc--ccceEEEEEEeeecccCcccHHHHHHHHHhhCeEEEEEeechhHH----HHHHHHH
Confidence 9999999999999999999765 443433 33477777899999999999999999999999999995 9999999
Q ss_pred HhcCCCCcEEEEcCCCCchhhhhhhcC
Q 016164 161 AVNNNDSSHLVHVPPGPNALSDVLLST 187 (394)
Q Consensus 161 ~vn~~~~S~~v~vp~g~~lLsD~l~ss 187 (394)
+++ +-|.|.+.++ | |.+.+.-.
T Consensus 214 aT~---G~Y~V~lDe~-H-lkeLl~e~ 235 (378)
T KOG2807|consen 214 ATG---GRYSVALDEG-H-LKELLLEH 235 (378)
T ss_pred hhC---CeEEEEeCHH-H-HHHHHHhc
Confidence 996 4677777776 4 67776544
No 6
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.97 E-value=2.3e-29 Score=230.51 Aligned_cols=173 Identities=20% Similarity=0.298 Sum_probs=147.8
Q ss_pred cceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc-cc
Q 016164 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL-EI 81 (394)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l-~~ 81 (394)
+..+||+||+|.||.+.||.||||++++.+++.|++.+++.||.++||||+|+++.+++++|+|.|+..++..|+.+ .+
T Consensus 3 ~r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~~~ 82 (183)
T cd01453 3 MRHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPRKHIQALKTAREC 82 (183)
T ss_pred eeEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHHHHHHHhhcccCC
Confidence 56899999999999999999999999999999999999999999999999995444899999999999999999987 67
Q ss_pred cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (394)
.|+++|..||++|...|++++ ....++||||+++..++++.++..+++++|+++|+|++|+||.+. +.|+++++.
T Consensus 83 ~G~t~l~~aL~~A~~~l~~~~-~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~----~~L~~ia~~ 157 (183)
T cd01453 83 SGEPSLQNGLEMALESLKHMP-SHGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM----HICKEICKA 157 (183)
T ss_pred CCchhHHHHHHHHHHHHhcCC-ccCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH----HHHHHHHHH
Confidence 888999999999999999853 233566777776655567777888999999999999999999765 589999988
Q ss_pred hcCCCCcEEEEcCCCCchhhhhhh
Q 016164 162 VNNNDSSHLVHVPPGPNALSDVLL 185 (394)
Q Consensus 162 vn~~~~S~~v~vp~g~~lLsD~l~ 185 (394)
+ ++.||.+..+. + |.+++.
T Consensus 158 t---gG~~~~~~~~~-~-l~~~~~ 176 (183)
T cd01453 158 T---NGTYKVILDET-H-LKELLL 176 (183)
T ss_pred h---CCeeEeeCCHH-H-HHHHHH
Confidence 8 46777665553 3 666653
No 7
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=1.4e-26 Score=225.71 Aligned_cols=178 Identities=15% Similarity=0.232 Sum_probs=156.9
Q ss_pred cceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc-cc
Q 016164 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL-EI 81 (394)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l-~~ 81 (394)
+...+|+||+|++|...||.|+|+.-+.+++..||.+||+|||++|+|||.|++..+...+.+.+|+..++..|..+ .|
T Consensus 87 iRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~~~gnpq~hi~~lkS~rd~ 166 (421)
T COG5151 87 IRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSSMDGNPQAHIGQLKSKRDC 166 (421)
T ss_pred hheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhhcCCCHHHHHHHhhccccc
Confidence 46789999999999999999999999999999999999999999999999999998888899999999999999988 79
Q ss_pred cCcccHHHHHHHHHHHhhhcCCCCCCeEE-EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHRQNKKQQQRI-IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr~~k~~~~RI-VlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
.|+++|+|||++|+..|-| +..|..|. +|++||..+.||+++++++.+|...+|+|.+||+.+++ .+|+.+|+
T Consensus 167 ~gnfSLqNaLEmar~~l~~--~~~H~trEvLiifgS~st~DPgdi~~tid~Lv~~~IrV~~igL~aev----aicKeick 240 (421)
T COG5151 167 SGNFSLQNALEMARIELMK--NTMHGTREVLIIFGSTSTRDPGDIAETIDKLVAYNIRVHFIGLCAEV----AICKEICK 240 (421)
T ss_pred CCChhHHhHHHHhhhhhcc--cccccceEEEEEEeecccCCCccHHHHHHHHHhhceEEEEEeehhHH----HHHHHHHh
Confidence 9999999999999888877 44554444 44448888889999999999999999999999999998 59999999
Q ss_pred HhcCCC-CcEEEEcCCCCchhhhhhhcCc
Q 016164 161 AVNNND-SSHLVHVPPGPNALSDVLLSTP 188 (394)
Q Consensus 161 ~vn~~~-~S~~v~vp~g~~lLsD~l~ssp 188 (394)
++|+++ +-|+|.|..+ | |++++..+.
T Consensus 241 aTn~~~e~~y~v~vde~-H-l~el~~E~~ 267 (421)
T COG5151 241 ATNSSTEGRYYVPVDEG-H-LSELMRELS 267 (421)
T ss_pred hcCcCcCceeEeeecHH-H-HHHHHHhcC
Confidence 999875 5566666665 5 666665543
No 8
>PRK13685 hypothetical protein; Provisional
Probab=99.81 E-value=9.7e-19 Score=173.30 Aligned_cols=154 Identities=23% Similarity=0.334 Sum_probs=130.9
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~ 84 (394)
.+|||||.|.||...|+.|+||+.++.++..|++. .+|..+||||+|++. +.+++++|.|+..+...|..+.++|.
T Consensus 90 ~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~---l~~~d~vglv~Fa~~-a~~~~p~t~d~~~l~~~l~~l~~~~~ 165 (326)
T PRK13685 90 VVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADE---LTPGINLGLIAFAGT-ATVLVSPTTNREATKNAIDKLQLADR 165 (326)
T ss_pred eEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHh---CCCCCeEEEEEEcCc-eeecCCCCCCHHHHHHHHHhCCCCCC
Confidence 58999999999999999999999999999999985 467899999999998 68999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhhc------CCCCCCeEEEEEecCCCCCC-----hhHHHHHHHHHHhCCceEEEEEeCCCCC----
Q 016164 85 LNLAAGIQVAQLALKHR------QNKKQQQRIIVFVGSPIKHE-----KKVLEMIGRKLKKNSVALDIVNFGEDDE---- 149 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr------~~k~~~~RIVlFvgSp~~~d-----~~~l~~~akkLKknnI~VdiI~fG~e~~---- 149 (394)
++++.+|..|...++.. ......++||+|+++..+.. +.....+++.+++.+|+|++||||....
T Consensus 166 T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~ 245 (326)
T PRK13685 166 TATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEI 245 (326)
T ss_pred cchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCc
Confidence 99999999998887621 01234678999998876542 2345678899999999999999998521
Q ss_pred --------CcHHHHHHHHHHh
Q 016164 150 --------GNTEKLEALLAAV 162 (394)
Q Consensus 150 --------~n~~~l~~~~~~v 162 (394)
.+.+.|+++.+.+
T Consensus 246 ~g~~~~~~~d~~~L~~iA~~t 266 (326)
T PRK13685 246 NGQRQPVPVDDESLKKIAQLS 266 (326)
T ss_pred CCceeeecCCHHHHHHHHHhc
Confidence 2668899999876
No 9
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.77 E-value=2.4e-17 Score=142.75 Aligned_cols=165 Identities=24% Similarity=0.338 Sum_probs=128.9
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc---
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI--- 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~--- 81 (394)
.+|||||+|.||...|..++|+..++.++..|+..+ |.++|||++|.+. +.++.++|.|+..+...|.++.+
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~l~~f~~~-~~~~~~~t~~~~~~~~~l~~~~~~~~ 75 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANL----PGDRVGLVSFSDS-SRTLSPLTSDKDELKNALNKLSPQGM 75 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHH----TTSEEEEEEESTS-CEEEEEEESSHHHHHHHHHTHHHHG-
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHC----CCCEEEEEEeccc-ccccccccccHHHHHHHhhccccccc
Confidence 379999999999999999999999999999999973 7889999999997 58999999999999999998864
Q ss_pred -cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 82 -GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 82 -~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
+|.+.+..||..|...|... +..++.||+|.++.. ..+..++++.+++.+|+|++|+||... ...+.|+.+++
T Consensus 76 ~~~~t~~~~al~~a~~~~~~~--~~~~~~iv~iTDG~~---~~~~~~~~~~~~~~~i~i~~v~~~~~~-~~~~~l~~la~ 149 (172)
T PF13519_consen 76 PGGGTNLYDALQEAAKMLASS--DNRRRAIVLITDGED---NSSDIEAAKALKQQGITIYTVGIGSDS-DANEFLQRLAE 149 (172)
T ss_dssp -SSS--HHHHHHHHHHHHHC---SSEEEEEEEEES-TT---HCHHHHHHHHHHCTTEEEEEEEES-TT--EHHHHHHHHH
T ss_pred CccCCcHHHHHHHHHHHHHhC--CCCceEEEEecCCCC---CcchhHHHHHHHHcCCeEEEEEECCCc-cHHHHHHHHHH
Confidence 68899999999999999763 235556666666532 245557999999999999999999998 55689999998
Q ss_pred HhcCCCCcEEEEcCCCCchhhhhh
Q 016164 161 AVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 161 ~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
.++ .+|+.+...+.-|.+++
T Consensus 150 ~tg----G~~~~~~~~~~~l~~~~ 169 (172)
T PF13519_consen 150 ATG----GRYFHVDNDPEDLDDAF 169 (172)
T ss_dssp HTE----EEEEEE-SSSHHHHHHH
T ss_pred hcC----CEEEEecCCHHHHHHHH
Confidence 774 46777733333466655
No 10
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.74 E-value=2.8e-16 Score=140.15 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=123.3
Q ss_pred eEEEEEeCChhhhCCCC-CCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc---
Q 016164 5 ATLICIDNSEWMRNGDY-APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE--- 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~-~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~--- 80 (394)
.++||||.|.||...|+ .|+|+..++.++..|+. ..|..+||||+|.+. +.+++++|.+...+...|+.+.
T Consensus 4 ~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~----~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~l~~l~~~~ 78 (180)
T cd01467 4 DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFID----RRENDRIGLVVFAGA-AFTQAPLTLDRESLKELLEDIKIGL 78 (180)
T ss_pred eEEEEEECCcccccccCCCCCHHHHHHHHHHHHHH----hCCCCeEEEEEEcCC-eeeccCCCccHHHHHHHHHHhhhcc
Confidence 47999999999999998 68999999998887776 457899999999886 6888999999988877777764
Q ss_pred ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC----------CCC
Q 016164 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED----------DEG 150 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e----------~~~ 150 (394)
++|.+++..||..|...|... +..++.||||.++..+.........++.+++.+|.|++|+||.. . .
T Consensus 79 ~~g~T~l~~al~~a~~~l~~~--~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~-~ 155 (180)
T cd01467 79 AGQGTAIGDAIGLAIKRLKNS--EAKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTI-L 155 (180)
T ss_pred cCCCCcHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCcCCCCccc-C
Confidence 688999999999999888653 33567788888886655444555667788889999999999982 2 3
Q ss_pred cHHHHHHHHHHhc
Q 016164 151 NTEKLEALLAAVN 163 (394)
Q Consensus 151 n~~~l~~~~~~vn 163 (394)
..+.|+.|.+.++
T Consensus 156 ~~~~l~~la~~tg 168 (180)
T cd01467 156 DEDSLVEIADKTG 168 (180)
T ss_pred CHHHHHHHHHhcC
Confidence 5678999997774
No 11
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.73 E-value=5.5e-16 Score=136.34 Aligned_cols=146 Identities=22% Similarity=0.343 Sum_probs=121.0
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcccc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEIG 82 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~D~~kilsaL~~l~~~ 82 (394)
.++||||+|.||... ||+.++.++..++.. .++..+|||++|.+. +.++++++ .++..++..|..+.++
T Consensus 2 ~~~~vlD~S~SM~~~-----~~~~~k~a~~~~~~~---l~~~~~v~li~f~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~ 72 (170)
T cd01465 2 NLVFVIDRSGSMDGP-----KLPLVKSALKLLVDQ---LRPDDRLAIVTYDGA-AETVLPATPVRDKAAILAAIDRLTAG 72 (170)
T ss_pred cEEEEEECCCCCCCh-----hHHHHHHHHHHHHHh---CCCCCEEEEEEecCC-ccEEecCcccchHHHHHHHHHcCCCC
Confidence 478999999999743 588999999988885 678889999999997 58887766 5888899999999999
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCC---hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016164 83 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE---KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (394)
Q Consensus 83 G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d---~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (394)
|.+++..+|..|...++++..+...++||||+++..+++ ...+.+.++++++.+|.|++|+||. . .+...|+.|+
T Consensus 73 g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~-~-~~~~~l~~ia 150 (170)
T cd01465 73 GSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD-N-YNEDLMEAIA 150 (170)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCC-C-cCHHHHHHHH
Confidence 999999999999998876533334478999998876543 4667788888999999999999994 3 5789999998
Q ss_pred HH
Q 016164 160 AA 161 (394)
Q Consensus 160 ~~ 161 (394)
..
T Consensus 151 ~~ 152 (170)
T cd01465 151 DA 152 (170)
T ss_pred hc
Confidence 53
No 12
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.69 E-value=2.7e-15 Score=135.60 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=123.8
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCcc
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEL 85 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~~ 85 (394)
++||||.|.||..+ +||...+.++..|+... .++..+||||+|.++.+.+++++|.++..+...|..+.++|.|
T Consensus 3 v~lvlD~SgSM~~~----~rl~~ak~a~~~~~~~~--~~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~T 76 (178)
T cd01451 3 VIFVVDASGSMAAR----HRMAAAKGAVLSLLRDA--YQRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGGT 76 (178)
T ss_pred EEEEEECCccCCCc----cHHHHHHHHHHHHHHHh--hcCCCEEEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCCC
Confidence 78999999999753 79999999999998753 3478899999999865788999999999999999999999999
Q ss_pred cHHHHHHHHHHHhh-hcCCCCCCeEEEEEecCCCCC--Ch-hHH-HHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 86 NLAAGIQVAQLALK-HRQNKKQQQRIIVFVGSPIKH--EK-KVL-EMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 86 sL~~gL~iA~lALk-hr~~k~~~~RIVlFvgSp~~~--d~-~~l-~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
+|..||..|...|+ +...+..+++||||.++..++ ++ ... ..+++++++.+|.|.+|++|... .+...|+.+.+
T Consensus 77 ~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~-~~~~~l~~iA~ 155 (178)
T cd01451 77 PLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRP-VRRGLAKDLAR 155 (178)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCc-cCccHHHHHHH
Confidence 99999999998883 211223457888888887664 22 233 67899999999999999999865 46789999998
Q ss_pred Hhc
Q 016164 161 AVN 163 (394)
Q Consensus 161 ~vn 163 (394)
.++
T Consensus 156 ~tg 158 (178)
T cd01451 156 ALG 158 (178)
T ss_pred HcC
Confidence 773
No 13
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.65 E-value=1.1e-14 Score=129.09 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=122.8
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCccc-
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEI- 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~D~~kilsaL~~l~~- 81 (394)
.++|+||.|.||.. .+|+.++.++..|+..+...+...+||||+|+++ +.+..+++ .|...++..|..+..
T Consensus 2 Dvv~vlD~SgSm~~-----~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~-~~~~~~~~~~~~~~~~~~~l~~l~~~ 75 (164)
T cd01472 2 DIVFLVDGSESIGL-----SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDD-PRTEFYLNTYRSKDDVLEAVKNLRYI 75 (164)
T ss_pred CEEEEEeCCCCCCH-----HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCc-eeEEEecCCCCCHHHHHHHHHhCcCC
Confidence 37999999999974 6889999999999998765666789999999987 68889999 899999999999986
Q ss_pred cCcccHHHHHHHHHHHhhhc---CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr---~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
+|.+++..||..|...|... ..++.++.||+|.++..+ .+....+..+++.+|+|.+||+|.. +.+.|+.+
T Consensus 76 ~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~---~~~~~~~~~l~~~gv~i~~ig~g~~---~~~~L~~i 149 (164)
T cd01472 76 GGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQ---DDVEEPAVELKQAGIEVFAVGVKNA---DEEELKQI 149 (164)
T ss_pred CCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCC---chHHHHHHHHHHCCCEEEEEECCcC---CHHHHHHH
Confidence 77899999999999888752 234466777777766432 2345567789999999999999975 56899998
Q ss_pred HHHhcCCCCcEEEEc
Q 016164 159 LAAVNNNDSSHLVHV 173 (394)
Q Consensus 159 ~~~vn~~~~S~~v~v 173 (394)
+... ++.|...+
T Consensus 150 a~~~---~~~~~~~~ 161 (164)
T cd01472 150 ASDP---KELYVFNV 161 (164)
T ss_pred HCCC---chheEEec
Confidence 8433 35565543
No 14
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=99.65 E-value=4.8e-15 Score=138.39 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=116.9
Q ss_pred ceEEEEEeCChhhhCC-CC-CCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc---------cEEEECC-CCCHHH
Q 016164 4 EATLICIDNSEWMRNG-DY-APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG---------VRVLVTP-TSDLGK 71 (394)
Q Consensus 4 Ea~vIvIDnSesMrng-D~-~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~---------a~vLvtl-T~D~~k 71 (394)
|+++||||+|.||... |. .|+||+.++.++..|++.|.-.+|..+||||.|+... ..++.+| |.+...
T Consensus 2 e~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~ 81 (218)
T cd01458 2 ESVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAER 81 (218)
T ss_pred cEEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHH
Confidence 8999999999999855 33 4999999999999999998889999999999999863 2356776 566655
Q ss_pred HHHHhcCccc-----------cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC-----ChhHHHHHHHHHHhC
Q 016164 72 ILACMHGLEI-----------GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-----EKKVLEMIGRKLKKN 135 (394)
Q Consensus 72 ilsaL~~l~~-----------~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~-----d~~~l~~~akkLKkn 135 (394)
+...++.+.+ .++++|..||.+|...|++...+...+|||+|+++.... +...+.+.++.|++.
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~ 161 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK 161 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 5444433322 457999999999999999854455789999999865542 246677899999999
Q ss_pred CceEEEEEeCCCC
Q 016164 136 SVALDIVNFGEDD 148 (394)
Q Consensus 136 nI~VdiI~fG~e~ 148 (394)
+|.|.+|++|...
T Consensus 162 gI~i~~i~i~~~~ 174 (218)
T cd01458 162 GIELELFPLSSPG 174 (218)
T ss_pred CcEEEEEecCCCC
Confidence 9999999999986
No 15
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.63 E-value=1.7e-14 Score=131.36 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=121.1
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhcc------CCcCCeEEEEEecCCccEEEECCC---CCHHHHHHH
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQ------LNPENTVGVMTMAGKGVRVLVTPT---SDLGKILAC 75 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~------~NPes~VGLVtmag~~a~vLvtlT---~D~~kilsa 75 (394)
.++|+||.|.||.. ++|+.++++++.|++.+.. .+...+||||+|++. +.+..++| .+...++.+
T Consensus 4 dvv~vlD~S~Sm~~-----~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~-~~~~~~l~~~~~~~~~l~~~ 77 (186)
T cd01480 4 DITFVLDSSESVGL-----QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQ-QEVEAGFLRDIRNYTSLKEA 77 (186)
T ss_pred eEEEEEeCCCccch-----hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCC-ceeeEecccccCCHHHHHHH
Confidence 58999999999974 6788889999999998744 356789999999987 68999998 789999999
Q ss_pred hcCcc-ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 016164 76 MHGLE-IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 153 (394)
Q Consensus 76 L~~l~-~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~ 153 (394)
|+.++ .+|.+++..||..|...+.....+..++.||+|+++.... +...+.+.++.+|+.||.|++|++|. . |..
T Consensus 78 i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~-~--~~~ 154 (186)
T cd01480 78 VDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS-Q--NEE 154 (186)
T ss_pred HHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc-c--chH
Confidence 99997 5889999999999998887522345778888888887643 35578889999999999999999998 3 456
Q ss_pred HHHHHH
Q 016164 154 KLEALL 159 (394)
Q Consensus 154 ~l~~~~ 159 (394)
.|+.+.
T Consensus 155 ~L~~IA 160 (186)
T cd01480 155 PLSRIA 160 (186)
T ss_pred HHHHHH
Confidence 788876
No 16
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.63 E-value=8.2e-15 Score=129.86 Aligned_cols=148 Identities=16% Similarity=0.261 Sum_probs=116.8
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHHHHHHhcCccc
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGKILACMHGLEI 81 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~----D~~kilsaL~~l~~ 81 (394)
++|+||.|.||.. +||..++.++..+++. .++..+||||+|++. ++++.++|. +...+...+..+.+
T Consensus 3 v~~vlD~S~SM~~-----~rl~~ak~a~~~l~~~---l~~~~~~~li~F~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~ 73 (155)
T cd01466 3 LVAVLDVSGSMAG-----DKLQLVKHALRFVISS---LGDADRLSIVTFSTS-AKRLSPLRRMTAKGKRSAKRVVDGLQA 73 (155)
T ss_pred EEEEEECCCCCCc-----HHHHHHHHHHHHHHHh---CCCcceEEEEEecCC-ccccCCCcccCHHHHHHHHHHHHhccC
Confidence 6899999999964 3999999999988875 456689999999997 688888873 45677888889999
Q ss_pred cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (394)
+|.+++..||+.|...|+.+..++..++|||++++..+.. ....++++.+|.|++||||... +.+.|+.+.+.
T Consensus 74 ~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~-----~~~~~~~~~~v~v~~igig~~~--~~~~l~~iA~~ 146 (155)
T cd01466 74 GGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHG-----AVVLRADNAPIPIHTFGLGASH--DPALLAFIAEI 146 (155)
T ss_pred CCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcc-----hhhhcccCCCceEEEEecCCCC--CHHHHHHHHhc
Confidence 9999999999999998876544556688898887765443 2234466789999999999754 57889999876
Q ss_pred hcCCCCcEEE
Q 016164 162 VNNNDSSHLV 171 (394)
Q Consensus 162 vn~~~~S~~v 171 (394)
++ +..|||
T Consensus 147 t~--G~~~~~ 154 (155)
T cd01466 147 TG--GTFSYV 154 (155)
T ss_pred cC--ceEEEe
Confidence 63 344444
No 17
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.63 E-value=1.7e-14 Score=133.00 Aligned_cols=150 Identities=25% Similarity=0.343 Sum_probs=117.6
Q ss_pred ceEEEEEeCChhhhC-CCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc-----cEEEE---CCC--------
Q 016164 4 EATLICIDNSEWMRN-GDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-----VRVLV---TPT-------- 66 (394)
Q Consensus 4 Ea~vIvIDnSesMrn-gD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~-----a~vLv---tlT-------- 66 (394)
-.++||||+|.||.. .+-.++||+..+.++..|+.. .+|..+|||++|++.. .++++ +++
T Consensus 21 ~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~---l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 97 (206)
T cd01456 21 PNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANA---LPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFPS 97 (206)
T ss_pred CcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHh---CCCCceEEEEEecCCCCCCccccccccccccccccCCCCc
Confidence 368999999999984 445689999999999999986 5678899999999842 23333 222
Q ss_pred CCHHHHHHHhcCcc-ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhC-----CceEE
Q 016164 67 SDLGKILACMHGLE-IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN-----SVALD 140 (394)
Q Consensus 67 ~D~~kilsaL~~l~-~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKkn-----nI~Vd 140 (394)
.++..+...|..+. ++|.++|..||+.|...|. +...++||||+++..++.. +....++.+++. +|+|+
T Consensus 98 ~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~----~~~~~~iillTDG~~~~~~-~~~~~~~~~~~~~~~~~~i~i~ 172 (206)
T cd01456 98 AQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD----PGRVNVVVLITDGEDTCGP-DPCEVARELAKRRTPAPPIKVN 172 (206)
T ss_pred ccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC----CCCcceEEEEcCCCccCCC-CHHHHHHHHHHhcCCCCCceEE
Confidence 47888999999998 9999999999999988885 2233788999888766543 444556666654 99999
Q ss_pred EEEeCCCCCCcHHHHHHHHHHhc
Q 016164 141 IVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 141 iI~fG~e~~~n~~~l~~~~~~vn 163 (394)
+|+||... +.+.|+.+.+.++
T Consensus 173 ~igiG~~~--~~~~l~~iA~~tg 193 (206)
T cd01456 173 VIDFGGDA--DRAELEAIAEATG 193 (206)
T ss_pred EEEecCcc--cHHHHHHHHHhcC
Confidence 99999874 5789999997764
No 18
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.61 E-value=5.6e-14 Score=118.27 Aligned_cols=150 Identities=21% Similarity=0.392 Sum_probs=128.6
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCcc--
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGLE-- 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~--D~~kilsaL~~l~-- 80 (394)
.++|+||.|.|| .+++|...+.++..++..+...++..++||+.|.+. ..++.+++. +...+...+..+.
T Consensus 2 ~v~~viD~S~Sm-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (161)
T cd00198 2 DIVFLLDVSGSM-----GGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSN-ARVVLPLTTDTDKADLLEAIDALKKG 75 (161)
T ss_pred cEEEEEeCCCCc-----CcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCc-cceeecccccCCHHHHHHHHHhcccC
Confidence 589999999999 678999999999999999888888999999999986 588888876 8888888888886
Q ss_pred ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
.+|.+++..+|..+...+.+...+...++||+|+++........+....+++++++|.|.+|++|.. .+...|+.|+.
T Consensus 76 ~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~~--~~~~~l~~l~~ 153 (161)
T cd00198 76 LGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGDD--ANEDELKEIAD 153 (161)
T ss_pred CCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCCC--CCHHHHHHHhc
Confidence 7889999999999999997753355777888888887665555788999999999999999999993 46788998886
Q ss_pred Hh
Q 016164 161 AV 162 (394)
Q Consensus 161 ~v 162 (394)
..
T Consensus 154 ~~ 155 (161)
T cd00198 154 KT 155 (161)
T ss_pred cc
Confidence 55
No 19
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.61 E-value=5.7e-14 Score=136.26 Aligned_cols=156 Identities=24% Similarity=0.247 Sum_probs=124.5
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc---
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI--- 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~--- 81 (394)
.++||||+|.||.. ++...+.++..|+...+ .|..+||||+|.+. +.++.++|.|+..+..+|..+.+
T Consensus 55 ~vvlvlD~SgSM~~------~~~~a~~a~~~~l~~~l--~~~d~v~lv~f~~~-~~~~~~~t~~~~~l~~~l~~l~~~~~ 125 (296)
T TIGR03436 55 TVGLVIDTSGSMRN------DLDRARAAAIRFLKTVL--RPNDRVFVVTFNTR-LRLLQDFTSDPRLLEAALNRLKPPLR 125 (296)
T ss_pred eEEEEEECCCCchH------HHHHHHHHHHHHHHhhC--CCCCEEEEEEeCCc-eeEeecCCCCHHHHHHHHHhccCCCc
Confidence 68999999999973 68888999999998743 58999999999986 68999999999999999999977
Q ss_pred ------------cCcccHHHHHHHHHH-HhhhcC-CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 82 ------------GGELNLAAGIQVAQL-ALKHRQ-NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 82 ------------~G~~sL~~gL~iA~l-ALkhr~-~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
+|.++|..||..|.+ .++... ....++.||+|+++..+.....+..+++.|++++|.|++|+||..
T Consensus 126 ~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~ 205 (296)
T TIGR03436 126 TDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGL 205 (296)
T ss_pred cccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCcc
Confidence 899999999987743 333321 112467788888886666667788999999999999999999864
Q ss_pred CC-----------CcHHHHHHHHHHhcCCCCcEEEE
Q 016164 148 DE-----------GNTEKLEALLAAVNNNDSSHLVH 172 (394)
Q Consensus 148 ~~-----------~n~~~l~~~~~~vn~~~~S~~v~ 172 (394)
.. .+.+.|+.|++.++ +.+|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~L~~iA~~TG---G~~~~~ 238 (296)
T TIGR03436 206 RAPDLGAGAKAGLGGPEALERLAEETG---GRAFYV 238 (296)
T ss_pred ccCCcccccccCCCcHHHHHHHHHHhC---CeEecc
Confidence 20 14679999998884 444444
No 20
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.60 E-value=5.8e-14 Score=126.76 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=123.2
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHH---HHHHhcC
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGK---ILACMHG 78 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~----D~~k---ilsaL~~ 78 (394)
++|+||.|.||... +||..++.++..|++.+--.++..+||||+|++. +.++++++. ++.. ++..|..
T Consensus 3 v~~vlD~SgSm~~~----~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~-~~~~~~l~~~~~~~~~~~~~~i~~l~~ 77 (186)
T cd01471 3 LYLLVDGSGSIGYS----NWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTN-AKELIRLSSPNSTNKDLALNAIRALLS 77 (186)
T ss_pred EEEEEeCCCCccch----hhHHHHHHHHHHHHHhcccCCCceEEEEEEecCC-ceEEEECCCccccchHHHHHHHHHHHh
Confidence 79999999999754 4789999999999998755666779999999987 577777654 4555 4444444
Q ss_pred c-cccCcccHHHHHHHHHHHhhhc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016164 79 L-EIGGELNLAAGIQVAQLALKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (394)
Q Consensus 79 l-~~~G~~sL~~gL~iA~lALkhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l 155 (394)
. .++|.+++..||..|...|.+. ..+..++.||+|+++..+.+ ......+++||+.+|.|.+||||... |.+.|
T Consensus 78 ~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~-~~~~~~a~~l~~~gv~v~~igiG~~~--d~~~l 154 (186)
T cd01471 78 LYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSK-FRTLKEARKLRERGVIIAVLGVGQGV--NHEEN 154 (186)
T ss_pred CcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCC-cchhHHHHHHHHCCCEEEEEEeehhh--CHHHH
Confidence 3 5788999999999999888652 12346678888887775543 34457899999999999999999864 67788
Q ss_pred HHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 156 EALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 156 ~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
+.|...-.+.+.|+.+..-+=.+ |..+|
T Consensus 155 ~~ia~~~~~~~~~~~~~~~~~~~-~~~~~ 182 (186)
T cd01471 155 RSLVGCDPDDSPCPLYLQSSWSE-VQNVI 182 (186)
T ss_pred HHhcCCCCCCCCCCeeecCCHHH-HHHHh
Confidence 88763221223355555544333 44444
No 21
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.58 E-value=1.3e-13 Score=119.86 Aligned_cols=149 Identities=23% Similarity=0.310 Sum_probs=125.2
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECC--CCCHHHHHHHhcCccc-
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTP--TSDLGKILACMHGLEI- 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtl--T~D~~kilsaL~~l~~- 81 (394)
.++||||+|.||. ++||.+++.++..|+..+...++..+|||++|.+. ...+.++ +.+...+...+..+.+
T Consensus 3 ~v~l~vD~S~SM~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 76 (177)
T smart00327 3 DVVFLLDGSGSMG-----PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDD-ATVLFPLNDSRSKDALLEALASLSYK 76 (177)
T ss_pred cEEEEEeCCCccc-----hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-ceEEEcccccCCHHHHHHHHHhcCCC
Confidence 4799999999997 78999999999999999999999999999999986 5777887 8999999999999985
Q ss_pred -cCcccHHHHHHHHHHHhhhcC---CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 016164 82 -GGELNLAAGIQVAQLALKHRQ---NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 157 (394)
Q Consensus 82 -~G~~sL~~gL~iA~lALkhr~---~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~ 157 (394)
.|.+++..+|..|...+.++. ....++.||+|.++.... ...+...++++++++|.|.+|++|... +...|+.
T Consensus 77 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~-~~~~~~~~~~~~~~~i~i~~i~~~~~~--~~~~l~~ 153 (177)
T smart00327 77 LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESND-GGDLLKAAKELKRSGVKVFVVGVGNDV--DEEELKK 153 (177)
T ss_pred CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCC-CccHHHHHHHHHHCCCEEEEEEccCcc--CHHHHHH
Confidence 888999999999999886322 222356777776665443 367899999999999999999999763 5689999
Q ss_pred HHHHh
Q 016164 158 LLAAV 162 (394)
Q Consensus 158 ~~~~v 162 (394)
|....
T Consensus 154 ~~~~~ 158 (177)
T smart00327 154 LASAP 158 (177)
T ss_pred HhCCC
Confidence 98655
No 22
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.56 E-value=1.6e-13 Score=118.19 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=122.4
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC--HHHHHHHhcCccc-c
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD--LGKILACMHGLEI-G 82 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D--~~kilsaL~~l~~-~ 82 (394)
++|+||+|.||.. .+|+..+.++..|+..+...++..++||++|.++ +.+.++++.+ ..+++..|..+.. .
T Consensus 3 i~~llD~S~Sm~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 76 (161)
T cd01450 3 IVFLLDGSESVGP-----ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDD-VRVEFSLNDYKSKDDLLKAVKNLKYLG 76 (161)
T ss_pred EEEEEeCCCCcCH-----HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCC-ceEEEECCCCCCHHHHHHHHHhcccCC
Confidence 7899999999974 3999999999999999888889999999999987 6788888876 8889998988743 4
Q ss_pred C-cccHHHHHHHHHHHhhhcC--CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016164 83 G-ELNLAAGIQVAQLALKHRQ--NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (394)
Q Consensus 83 G-~~sL~~gL~iA~lALkhr~--~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (394)
| .+++..||..|...+.... .+..++.||+|.++..+... ++.++++++++++|.|++|++|. . +.+.|+.|.
T Consensus 77 ~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~-~~~~~~~~~~~~~v~v~~i~~g~-~--~~~~l~~la 152 (161)
T cd01450 77 GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGG-DPKEAAAKLKDEGIKVFVVGVGP-A--DEEELREIA 152 (161)
T ss_pred CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCc-chHHHHHHHHHCCCEEEEEeccc-c--CHHHHHHHh
Confidence 3 8999999999999887643 23567778888888765533 78999999999999999999998 3 467888887
Q ss_pred HHh
Q 016164 160 AAV 162 (394)
Q Consensus 160 ~~v 162 (394)
...
T Consensus 153 ~~~ 155 (161)
T cd01450 153 SCP 155 (161)
T ss_pred CCC
Confidence 544
No 23
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.56 E-value=1.7e-13 Score=125.47 Aligned_cols=160 Identities=14% Similarity=0.213 Sum_probs=119.6
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC----CCHHHHHHHhcCcc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT----SDLGKILACMHGLE 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT----~D~~kilsaL~~l~ 80 (394)
.++||||.|.||. ++||+..+.++..|++.+-...+..+||||+|++. +.++++++ .+...++..|..+.
T Consensus 2 di~~vlD~SgSM~-----~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (198)
T cd01470 2 NIYIALDASDSIG-----EEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASD-PKEIVSIRDFNSNDADDVIKRLEDFN 75 (198)
T ss_pred cEEEEEECCCCcc-----HHHHHHHHHHHHHHHHHccccCCCceEEEEEecCC-ceEEEecccCCCCCHHHHHHHHHhCC
Confidence 3799999999995 67999999999999998655556889999999988 57777654 46788999998874
Q ss_pred -----ccCcccHHHHHHHHHHHhhhcC------CCCCCeEEEEEecCCCCC--ChhHHHHHHHHH----------HhCCc
Q 016164 81 -----IGGELNLAAGIQVAQLALKHRQ------NKKQQQRIIVFVGSPIKH--EKKVLEMIGRKL----------KKNSV 137 (394)
Q Consensus 81 -----~~G~~sL~~gL~iA~lALkhr~------~k~~~~RIVlFvgSp~~~--d~~~l~~~akkL----------KknnI 137 (394)
.+|+|++..||+.+...|.... ....++.||||+++..+. ++....+.++.+ |+.+|
T Consensus 76 ~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (198)
T cd01470 76 YDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYL 155 (198)
T ss_pred cccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcce
Confidence 3578999999999977663110 123467788898876653 444444444444 56689
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHhcCCCC-cEEEEcCC
Q 016164 138 ALDIVNFGEDDEGNTEKLEALLAAVNNNDS-SHLVHVPP 175 (394)
Q Consensus 138 ~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~-S~~v~vp~ 175 (394)
.|++||||... |.+.|+++.... ++ .|+..+..
T Consensus 156 ~i~~iGvG~~~--~~~~L~~iA~~~---~g~~~~f~~~~ 189 (198)
T cd01470 156 DVYVFGVGDDV--NKEELNDLASKK---DNERHFFKLKD 189 (198)
T ss_pred eEEEEecCccc--CHHHHHHHhcCC---CCCceEEEeCC
Confidence 99999999865 678999997533 34 37777654
No 24
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.56 E-value=3.2e-13 Score=118.61 Aligned_cols=157 Identities=16% Similarity=0.195 Sum_probs=121.1
Q ss_pred ceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--C---CHHHHHHHhcC
Q 016164 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--S---DLGKILACMHG 78 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~---D~~kilsaL~~ 78 (394)
-.++||||.|.||. ..||+..+.++..|+.. .++..+|+|++|+++ +..+.+++ . +....+..|..
T Consensus 3 ~~v~~vlD~S~SM~-----~~~~~~~~~al~~~l~~---l~~~~~~~l~~Fs~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (171)
T cd01461 3 KEVVFVIDTSGSMS-----GTKIEQTKEALLTALKD---LPPGDYFNIIGFSDT-VEEFSPSSVSATAENVAAAIEYVNR 73 (171)
T ss_pred ceEEEEEECCCCCC-----ChhHHHHHHHHHHHHHh---CCCCCEEEEEEeCCC-ceeecCcceeCCHHHHHHHHHHHHh
Confidence 45899999999996 35799999999988875 556779999999987 45554432 2 34556677788
Q ss_pred ccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 79 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
+.++|.+++..||..|...|+. .+...+.||+|+++.. .++.++.+.++++.+.+|+|++|+||... |...|+.+
T Consensus 74 ~~~~g~T~l~~al~~a~~~l~~--~~~~~~~iillTDG~~-~~~~~~~~~~~~~~~~~i~i~~i~~g~~~--~~~~l~~i 148 (171)
T cd01461 74 LQALGGTNMNDALEAALELLNS--SPGSVPQIILLTDGEV-TNESQILKNVREALSGRIRLFTFGIGSDV--NTYLLERL 148 (171)
T ss_pred cCCCCCcCHHHHHHHHHHhhcc--CCCCccEEEEEeCCCC-CCHHHHHHHHHHhcCCCceEEEEEeCCcc--CHHHHHHH
Confidence 8889999999999999888865 2446778888888874 44667888888888889999999999865 56899999
Q ss_pred HHHhcCCCCcEEEEcCCCCc
Q 016164 159 LAAVNNNDSSHLVHVPPGPN 178 (394)
Q Consensus 159 ~~~vn~~~~S~~v~vp~g~~ 178 (394)
++..+ ..|+.+.....
T Consensus 149 a~~~g----G~~~~~~~~~~ 164 (171)
T cd01461 149 AREGR----GIARRIYETDD 164 (171)
T ss_pred HHcCC----CeEEEecChHH
Confidence 97663 34555555444
No 25
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.55 E-value=2.6e-13 Score=122.88 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=124.1
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCc-ccc
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGL-EIG 82 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~--D~~kilsaL~~l-~~~ 82 (394)
++|+||.|.||. |.+|+.++..++.|+..+.-.++..+||||+|++. +.+..+++. +...++.++..+ ..+
T Consensus 3 i~fvlD~S~S~~-----~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~-~~~~~~l~~~~~~~~~~~~i~~~~~~~ 76 (177)
T cd01469 3 IVFVLDGSGSIY-----PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSES-FRTEFTLNEYRTKEEPLSLVKHISQLL 76 (177)
T ss_pred EEEEEeCCCCCC-----HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCc-eeEEEecCccCCHHHHHHHHHhCccCC
Confidence 789999999985 78999999999999999887778999999999998 688888883 556677888777 467
Q ss_pred CcccHHHHHHHHHHHhhh---cCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHHHHH
Q 016164 83 GELNLAAGIQVAQLALKH---RQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE--GNTEKLEA 157 (394)
Q Consensus 83 G~~sL~~gL~iA~lALkh---r~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~--~n~~~l~~ 157 (394)
|.+++..||..|...|-. ...+..++.+|||+++....+. ....+++.||++||.|++||+|.... .+.+.|+.
T Consensus 77 g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~-~~~~~~~~~k~~gv~v~~Vgvg~~~~~~~~~~~L~~ 155 (177)
T cd01469 77 GLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP-LLKDVIPQAEREGIIRYAIGVGGHFQRENSREELKT 155 (177)
T ss_pred CCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc-ccHHHHHHHHHCCcEEEEEEecccccccccHHHHHH
Confidence 789999999999876621 1123466777778777765433 23667889999999999999999651 12466666
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 016164 158 LLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 158 ~~~~vn~~~~S~~v~vp~g 176 (394)
++ ......|+..+..-
T Consensus 156 ia---s~p~~~h~f~~~~~ 171 (177)
T cd01469 156 IA---SKPPEEHFFNVTDF 171 (177)
T ss_pred Hh---cCCcHHhEEEecCH
Confidence 65 33355788888654
No 26
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.55 E-value=2.7e-13 Score=123.63 Aligned_cols=148 Identities=16% Similarity=0.139 Sum_probs=112.8
Q ss_pred ceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC---------CCHHHHHH
Q 016164 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT---------SDLGKILA 74 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT---------~D~~kils 74 (394)
-.++||||.|.||.. +||+.++.++..|+.. .++..+||||+|++. +.++++++ .++.+++.
T Consensus 14 ~~vv~llD~SgSM~~-----~~l~~ak~~~~~ll~~---l~~~d~v~lv~F~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (190)
T cd01463 14 KDIVILLDVSGSMTG-----QRLHLAKQTVSSILDT---LSDNDFFNIITFSNE-VNPVVPCFNDTLVQATTSNKKVLKE 84 (190)
T ss_pred ceEEEEEECCCCCCc-----HHHHHHHHHHHHHHHh---CCCCCEEEEEEeCCC-eeEEeeecccceEecCHHHHHHHHH
Confidence 368999999999963 6999999999999885 567889999999998 57776654 35688899
Q ss_pred HhcCccccCcccHHHHHHHHHHHhhh---c----CCCCCCeEEEEEecCCCCCChhHHHHHHHHHH--hCCceEEEEEeC
Q 016164 75 CMHGLEIGGELNLAAGIQVAQLALKH---R----QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLK--KNSVALDIVNFG 145 (394)
Q Consensus 75 aL~~l~~~G~~sL~~gL~iA~lALkh---r----~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLK--knnI~VdiI~fG 145 (394)
.|..+.++|.+++..||+.|...|+. . ..+...+.||||+++..+. ..++....++.+ ..+|+|.+||||
T Consensus 85 ~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~~~~v~i~tigiG 163 (190)
T cd01463 85 ALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN-YKEIFDKYNWDKNSEIPVRVFTYLIG 163 (190)
T ss_pred HHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc-HhHHHHHhcccccCCCcEEEEEEecC
Confidence 99999999999999999999888864 1 1123456788888876554 333333222111 126999999999
Q ss_pred CCCCCcHHHHHHHHHHh
Q 016164 146 EDDEGNTEKLEALLAAV 162 (394)
Q Consensus 146 ~e~~~n~~~l~~~~~~v 162 (394)
.+. .|...|+.+....
T Consensus 164 ~~~-~d~~~L~~lA~~~ 179 (190)
T cd01463 164 REV-TDRREIQWMACEN 179 (190)
T ss_pred Ccc-ccchHHHHHHhhc
Confidence 986 4678999998765
No 27
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.55 E-value=5e-13 Score=118.96 Aligned_cols=155 Identities=14% Similarity=0.167 Sum_probs=120.3
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcc-c
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLE-I 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~D~~kilsaL~~l~-~ 81 (394)
.++++||.|.||.. .+|...+.++..|+..+.-.++..+||||+|+++ +.+..+++ .+...++..|..+. +
T Consensus 2 Dv~~vlD~S~Sm~~-----~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~-~~~~~~l~~~~~~~~l~~~l~~~~~~ 75 (164)
T cd01482 2 DIVFLVDGSWSIGR-----SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDD-PRTEFDLNAYTSKEDVLAAIKNLPYK 75 (164)
T ss_pred CEEEEEeCCCCcCh-----hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCC-eeEEEecCCCCCHHHHHHHHHhCcCC
Confidence 37999999999964 5789999999999998755667899999999998 58877776 67888999999886 6
Q ss_pred cCcccHHHHHHHHHHHhhhc---CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr---~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
+|.+++..||..|...+..+ ..+..++.||||+++..+ .++...+++||+.||.|++||+|.. +.+.|+++
T Consensus 76 ~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~---~~~~~~a~~lk~~gi~i~~ig~g~~---~~~~L~~i 149 (164)
T cd01482 76 GGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQ---DDVELPARVLRNLGVNVFAVGVKDA---DESELKMI 149 (164)
T ss_pred CCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCC---chHHHHHHHHHHCCCEEEEEecCcC---CHHHHHHH
Confidence 88999999999887554221 123456677888777643 3567789999999999999999974 35678887
Q ss_pred HHHhcCCCCcEEEEcC
Q 016164 159 LAAVNNNDSSHLVHVP 174 (394)
Q Consensus 159 ~~~vn~~~~S~~v~vp 174 (394)
+.. ....|+..|.
T Consensus 150 a~~---~~~~~~~~~~ 162 (164)
T cd01482 150 ASK---PSETHVFNVA 162 (164)
T ss_pred hCC---CchheEEEcC
Confidence 743 2456776654
No 28
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.54 E-value=6.6e-13 Score=120.58 Aligned_cols=155 Identities=12% Similarity=0.135 Sum_probs=113.1
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHh---cCccc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACM---HGLEI 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL---~~l~~ 81 (394)
.++|+||.|.||... .+. .++.++.++..+. .|..+||||+|++. ++++.++|.+...+..+| ..+.+
T Consensus 6 Dvv~llD~SgSm~~~--~~~----~~~~~~~l~~~~~--~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~l~~l~~~~~ 76 (185)
T cd01474 6 DLYFVLDKSGSVAAN--WIE----IYDFVEQLVDRFN--SPGLRFSFITFSTR-ATKILPLTDDSSAIIKGLEVLKKVTP 76 (185)
T ss_pred eEEEEEeCcCchhhh--HHH----HHHHHHHHHHHcC--CCCcEEEEEEecCC-ceEEEeccccHHHHHHHHHHHhccCC
Confidence 589999999999742 223 3466777776653 47899999999987 799999999887776664 66677
Q ss_pred cCcccHHHHHHHHHHHhh--hcCCCCCCeEEEEEecCCCC-CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALK--HRQNKKQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALk--hr~~k~~~~RIVlFvgSp~~-~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
+|.|++..||+.|...|. ....+...+.||+|.++..+ .........++.++++||.|++||+|. .|...|+.+
T Consensus 77 ~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv~~---~~~~~L~~i 153 (185)
T cd01474 77 SGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGVTD---FLKSQLINI 153 (185)
T ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEeech---hhHHHHHHH
Confidence 899999999999987663 22222233678888877653 234466778899999999999999943 456678888
Q ss_pred HHHhcCCCCcEEEEcCCC
Q 016164 159 LAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 159 ~~~vn~~~~S~~v~vp~g 176 (394)
+. ...|+..+..+
T Consensus 154 A~-----~~~~~f~~~~~ 166 (185)
T cd01474 154 AD-----SKEYVFPVTSG 166 (185)
T ss_pred hC-----CCCeeEecCcc
Confidence 73 22466645443
No 29
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.53 E-value=5.4e-13 Score=123.94 Aligned_cols=148 Identities=19% Similarity=0.299 Sum_probs=110.0
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccC--Cc----CCeEEEEEecCCccEEEECCCC--CHHHHHHHh
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQL--NP----ENTVGVMTMAGKGVRVLVTPTS--DLGKILACM 76 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~--NP----es~VGLVtmag~~a~vLvtlT~--D~~kilsaL 76 (394)
.+||+||.|.||. |.||+..+..+..|+..+... +| ..+||||+|++. +.+..+|+. +...++.+|
T Consensus 21 DivfvlD~S~Sm~-----~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~-a~~~~~L~d~~~~~~~~~ai 94 (193)
T cd01477 21 DIVFVVDNSKGMT-----QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSN-ATVVADLNDLQSFDDLYSQI 94 (193)
T ss_pred eEEEEEeCCCCcc-----hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCc-eEEEEecccccCHHHHHHHH
Confidence 4799999999995 668999999998888865431 33 479999999998 799999984 456777777
Q ss_pred cC----ccccCcccHHHHHHHHHHHhhhc--CC-CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC
Q 016164 77 HG----LEIGGELNLAAGIQVAQLALKHR--QN-KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE 149 (394)
Q Consensus 77 ~~----l~~~G~~sL~~gL~iA~lALkhr--~~-k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~ 149 (394)
+. +..+|+++++.||+.|...|+.. .. ++.++-+|||+++.......+....+++||++||.|++||+|...
T Consensus 95 ~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~~- 173 (193)
T cd01477 95 QGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQDE- 173 (193)
T ss_pred HHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCCC-
Confidence 74 34567899999999999998731 11 223444666665533332355778899999999999999999864
Q ss_pred CcHHHHHHHHH
Q 016164 150 GNTEKLEALLA 160 (394)
Q Consensus 150 ~n~~~l~~~~~ 160 (394)
....++++.+
T Consensus 174 -d~~~~~~L~~ 183 (193)
T cd01477 174 -SSNLLDKLGK 183 (193)
T ss_pred -CHHHHHHHHH
Confidence 2445666653
No 30
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.53 E-value=4.8e-13 Score=142.79 Aligned_cols=167 Identities=19% Similarity=0.289 Sum_probs=135.2
Q ss_pred ceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccC
Q 016164 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGG 83 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G 83 (394)
-.++||||.|.||. + +||.++|.++..|+..- ..+..+||||+|+|..++++++||.+...+...|..+..+|
T Consensus 402 ~~vvfvvD~SGSM~-~----~rl~~aK~a~~~ll~~a--y~~rD~v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gG 474 (584)
T PRK13406 402 TTTIFVVDASGSAA-L----HRLAEAKGAVELLLAEA--YVRRDQVALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGG 474 (584)
T ss_pred ccEEEEEECCCCCc-H----hHHHHHHHHHHHHHHhh--cCCCCEEEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCC
Confidence 36899999999994 2 59999999999998752 24678999999999888999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCC----------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 016164 84 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE----------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 153 (394)
Q Consensus 84 ~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d----------~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~ 153 (394)
+|.|..||..|...++....+..+.+|||++++..+.. ..+...+++++++.+|.+.+|.+|... ..
T Consensus 475 gTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~~---~~ 551 (584)
T PRK13406 475 GTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPRP---QP 551 (584)
T ss_pred CChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCCC---cH
Confidence 99999999999888765433446788999998887642 145678899999999999999999654 35
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCC-Cchhhhhh
Q 016164 154 KLEALLAAVNNNDSSHLVHVPPG-PNALSDVL 184 (394)
Q Consensus 154 ~l~~~~~~vn~~~~S~~v~vp~g-~~lLsD~l 184 (394)
.++.|++.++ ..|+.+|.- ..-|++++
T Consensus 552 ~~~~LA~~~g----g~y~~l~~~~a~~~~~~v 579 (584)
T PRK13406 552 QARALAEAMG----ARYLPLPRADAGRLSQAV 579 (584)
T ss_pred HHHHHHHhcC----CeEEECCCCCHHHHHHHH
Confidence 7899998774 456677653 23355554
No 31
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.51 E-value=7e-13 Score=129.37 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=127.7
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc---
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI--- 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~--- 81 (394)
.+|||||+|.||...|..|+|++ ++..+. .++.+.+..+|||+.|++. +.++.|+|.|+.. ..+++-+.+
T Consensus 62 qIvlaID~S~SM~~~~~~~~ale-ak~lIs----~al~~Le~g~vgVv~Fg~~-~~~v~Plt~d~~~-~a~~~~l~~~~f 134 (266)
T cd01460 62 QILIAIDDSKSMSENNSKKLALE-SLCLVS----KALTLLEVGQLGVCSFGED-VQILHPFDEQFSS-QSGPRILNQFTF 134 (266)
T ss_pred eEEEEEecchhcccccccccHHH-HHHHHH----HHHHhCcCCcEEEEEeCCC-ceEeCCCCCCchh-hHHHHHhCcccC
Confidence 48999999999999999999998 444444 4445778899999999997 7999999999998 666665543
Q ss_pred -cCcccHHHHHHHHHHHhhhcC--CCCC--CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcH----
Q 016164 82 -GGELNLAAGIQVAQLALKHRQ--NKKQ--QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT---- 152 (394)
Q Consensus 82 -~G~~sL~~gL~iA~lALkhr~--~k~~--~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~---- 152 (394)
.++|++..+|..|...|..+. .... .+-|||+++|....+++....+++++++++|.|.+|++=... .+.
T Consensus 135 ~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~-~~~SI~d 213 (266)
T cd01460 135 QQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPD-NKQSILD 213 (266)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCC-CCCCccc
Confidence 367999999999999997541 1111 156666667775566677777799999999999999998762 111
Q ss_pred ----------H-HHHHHHHHhcCCCCcEEEEcCCC---Cchhhhhhh
Q 016164 153 ----------E-KLEALLAAVNNNDSSHLVHVPPG---PNALSDVLL 185 (394)
Q Consensus 153 ----------~-~l~~~~~~vn~~~~S~~v~vp~g---~~lLsD~l~ 185 (394)
. +++.|.+.. ..-||++|..= |+.|+|+|-
T Consensus 214 ~~~~~~~~~~~~~l~~Yl~~f---pfpYy~~~~~~~~lp~~l~~~lr 257 (266)
T cd01460 214 IKVVSFKNDKSGVITPYLDEF---PFPYYVIVRDLNQLPSVLSDALR 257 (266)
T ss_pred ccccccCCCCccHHHHHHhcC---CCCeEEEecChhHhHHHHHHHHH
Confidence 1 555555433 56788888652 567888774
No 32
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.47 E-value=1.3e-12 Score=120.73 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=114.0
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHHHHHHhcCcc-
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGKILACMHGLE- 80 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~----D~~kilsaL~~l~- 80 (394)
++|+||.|.||...+|.+.+.. .++.+++.+.-.....+||||.|++. +++..++|. +...++.+|+.+.
T Consensus 3 i~fllD~S~Si~~~~f~~~~~~----f~~~lv~~l~i~~~~~rvgvv~fs~~-~~~~~~~~~~~~~~~~~l~~~i~~l~~ 77 (192)
T cd01473 3 LTLILDESASIGYSNWRKDVIP----FTEKIINNLNISKDKVHVGILLFAEK-NRDVVPFSDEERYDKNELLKKINDLKN 77 (192)
T ss_pred EEEEEeCCCcccHHHHHHHHHH----HHHHHHHhCccCCCccEEEEEEecCC-ceeEEecCcccccCHHHHHHHHHHHHh
Confidence 7899999999998888666544 56666666665677899999999987 689888885 4667888777663
Q ss_pred ---ccCcccHHHHHHHHHHHhhhcCC--CCCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHH
Q 016164 81 ---IGGELNLAAGIQVAQLALKHRQN--KKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK 154 (394)
Q Consensus 81 ---~~G~~sL~~gL~iA~lALkhr~~--k~~~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~ 154 (394)
.+|.|++..||+.|...|....+ +..++.+|||++|.... +...+...++.||+.||.|.+||+|... ...
T Consensus 78 ~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~---~~e 154 (192)
T cd01473 78 SYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAAS---ENK 154 (192)
T ss_pred ccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecccc---HHH
Confidence 47899999999999877754221 22366778888888765 4567889999999999999999999865 356
Q ss_pred HHHHH
Q 016164 155 LEALL 159 (394)
Q Consensus 155 l~~~~ 159 (394)
|+.+.
T Consensus 155 l~~ia 159 (192)
T cd01473 155 LKLLA 159 (192)
T ss_pred HHHhc
Confidence 77776
No 33
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.46 E-value=6.4e-12 Score=110.60 Aligned_cols=145 Identities=21% Similarity=0.274 Sum_probs=112.7
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCC-ccEEEECCC--CCHHHHHHHhcCccc-
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGK-GVRVLVTPT--SDLGKILACMHGLEI- 81 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~-~a~vLvtlT--~D~~kilsaL~~l~~- 81 (394)
++|+||.|.||.. +|+.+++++..++..+...++..+||||+|++. .+.+..+++ .++..++..|+.+..
T Consensus 3 v~~llD~S~Sm~~------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~~ 76 (163)
T cd01476 3 LLFVLDSSGSVRG------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFI 76 (163)
T ss_pred EEEEEeCCcchhh------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCccC
Confidence 7899999999963 678889999999998776677899999999984 356777776 478889999999874
Q ss_pred cCcccHHHHHHHHHHHhhhc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCCCCCcHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKk-nnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
+|.+++..||..|...|... ..+..++.||||+++..+.+ ....++.|++ .+|.|+.|++|...+.|...|..+
T Consensus 77 gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~---~~~~~~~l~~~~~v~v~~vg~g~~~~~~~~~L~~i 153 (163)
T cd01476 77 GGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDD---PEKQARILRAVPNIETFAVGTGDPGTVDTEELHSI 153 (163)
T ss_pred CCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCc---hHHHHHHHhhcCCCEEEEEECCCccccCHHHHHHH
Confidence 77899999999999888521 12345577888887755443 4566777888 999999999998743456666666
Q ss_pred H
Q 016164 159 L 159 (394)
Q Consensus 159 ~ 159 (394)
.
T Consensus 154 a 154 (163)
T cd01476 154 T 154 (163)
T ss_pred h
Confidence 4
No 34
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.44 E-value=6.4e-12 Score=112.72 Aligned_cols=147 Identities=17% Similarity=0.152 Sum_probs=109.2
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc-----cEEEE--CCCCC-HHHHHHHh
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-----VRVLV--TPTSD-LGKILACM 76 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~-----a~vLv--tlT~D-~~kilsaL 76 (394)
+++|+||.|.||... +||+.++.++..|+....+ +..++||++|.+.. ..++. +.+.. ..++...|
T Consensus 2 ~v~~llD~SgSM~~~----~kl~~ak~a~~~l~~~l~~--~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 75 (174)
T cd01454 2 AVTLLLDLSGSMRSD----RRIDVAKKAAVLLAEALEA--CGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRL 75 (174)
T ss_pred EEEEEEECCCCCCCC----cHHHHHHHHHHHHHHHHHH--cCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHH
Confidence 589999999999844 8999999999999887654 68899999999872 12333 22222 13567788
Q ss_pred cCccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCC---------hhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 77 HGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE---------KKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 77 ~~l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d---------~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
..+.++|.+.+..||..|...|+.+ +..++.||+|+++..+.. ..+..+.++.+++.+|.|++||+|..
T Consensus 76 ~~~~~~g~T~~~~al~~a~~~l~~~--~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~ 153 (174)
T cd01454 76 AALSPGGNTRDGAAIRHAAERLLAR--PEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRD 153 (174)
T ss_pred HccCCCCCCcHHHHHHHHHHHHhcC--CCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCc
Confidence 8899999999999999999888764 335666778877755431 12333448999999999999999998
Q ss_pred CC-CcHHHHHHHH
Q 016164 148 DE-GNTEKLEALL 159 (394)
Q Consensus 148 ~~-~n~~~l~~~~ 159 (394)
.. .+.+-++.+.
T Consensus 154 ~~~~~~~~~~~~~ 166 (174)
T cd01454 154 ATTVDKEYLKNIF 166 (174)
T ss_pred cccchHHHHHHhh
Confidence 62 1345555554
No 35
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.44 E-value=3.6e-12 Score=114.69 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=113.0
Q ss_pred cceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCC---cCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc
Q 016164 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLN---PENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL 79 (394)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~N---Pes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l 79 (394)
.=.++||||.|.||.. .+|...+.+++.|+....... +..+||||+|.+. ++++.++|..... .+..+
T Consensus 3 ~~~v~~llD~SgSM~~-----~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~-a~~~~~l~~~~~~---~~~~l 73 (176)
T cd01464 3 RLPIYLLLDTSGSMAG-----EPIEALNQGLQMLQSELRQDPYALESVEISVITFDSA-ARVIVPLTPLESF---QPPRL 73 (176)
T ss_pred CCCEEEEEECCCCCCC-----hHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCC-ceEecCCccHHhc---CCCcc
Confidence 3358999999999954 368888999999998755432 5679999999997 6999998864322 24456
Q ss_pred cccCcccHHHHHHHHHHHhhhcCC-------CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcH
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQN-------KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT 152 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~-------k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~ 152 (394)
..+|+|++..||..|...|+.+.. +..++.||+++++..+.+.....+.++.+++.++.|.+||+|.. .|.
T Consensus 74 ~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~--~~~ 151 (176)
T cd01464 74 TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPK--ADL 151 (176)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEeccc--cCH
Confidence 788999999999999988865321 22345788888887665555556778888888999999999994 478
Q ss_pred HHHHHHHH
Q 016164 153 EKLEALLA 160 (394)
Q Consensus 153 ~~l~~~~~ 160 (394)
+.|++|.+
T Consensus 152 ~~L~~ia~ 159 (176)
T cd01464 152 DTLKQITE 159 (176)
T ss_pred HHHHHHHC
Confidence 89999874
No 36
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.44 E-value=6.5e-12 Score=117.82 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=119.2
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcc-c
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLE-I 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~D~~kilsaL~~l~-~ 81 (394)
.++|+||.|.||. +.+|+.++.++..|++.+.-.+...+||||+|+.. +.+..+++ .+...+..+|..+. .
T Consensus 4 DlvfllD~S~Sm~-----~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~-~~~~~~l~~~~~~~~l~~~i~~i~~~ 77 (224)
T cd01475 4 DLVFLIDSSRSVR-----PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSST-VKQEFPLGRFKSKADLKRAVRRMEYL 77 (224)
T ss_pred cEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCc-eeEEecccccCCHHHHHHHHHhCcCC
Confidence 5899999999995 67899999999999998665556789999999988 68999998 56778899998885 4
Q ss_pred cCcccHHHHHHHHHHH-hhh----cCCCC-CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016164 82 GGELNLAAGIQVAQLA-LKH----RQNKK-QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lA-Lkh----r~~k~-~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l 155 (394)
+|.+.+..||..|... +.. |+... .++.+|||+++... +++...++.||+.||.|++||+|.. +...|
T Consensus 78 ~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~---~~~~~~a~~lk~~gv~i~~VgvG~~---~~~~L 151 (224)
T cd01475 78 ETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQ---DDVSEVAAKARALGIEMFAVGVGRA---DEEEL 151 (224)
T ss_pred CCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCc---ccHHHHHHHHHHCCcEEEEEeCCcC---CHHHH
Confidence 6778999999999754 432 22211 24556777777643 3467789999999999999999973 35677
Q ss_pred HHHHHHhcCCCCcEEEEcCCC
Q 016164 156 EALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 156 ~~~~~~vn~~~~S~~v~vp~g 176 (394)
+.++. .....|+..+..-
T Consensus 152 ~~ias---~~~~~~~f~~~~~ 169 (224)
T cd01475 152 REIAS---EPLADHVFYVEDF 169 (224)
T ss_pred HHHhC---CCcHhcEEEeCCH
Confidence 77763 2234577776553
No 37
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.43 E-value=4.1e-12 Score=140.18 Aligned_cols=143 Identities=15% Similarity=0.236 Sum_probs=114.9
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC-----CHHHHHHHhcCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS-----DLGKILACMHGL 79 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~-----D~~kilsaL~~l 79 (394)
.++||||.|.||..+| ||...+.|+..|+... .+|..+||||+|.+. +.++.+|+. ++.++...|. .
T Consensus 306 ~VVLVLDvSGSM~g~d----RL~~lkqAA~~fL~~~--l~~~DrVGLVtFsss-A~vl~pLt~Its~~dr~aL~~~L~-~ 377 (863)
T TIGR00868 306 IVCLVLDKSGSMTVED----RLKRMNQAAKLFLLQT--VEKGSWVGMVTFDSA-AYIKNELIQITSSAERDALTANLP-T 377 (863)
T ss_pred eEEEEEECCccccccC----HHHHHHHHHHHHHHHh--CCCCCEEEEEEECCc-eeEeeccccCCcHHHHHHHHHhhc-c
Confidence 4889999999998765 9999999999998875 467899999999997 688877762 5555666664 4
Q ss_pred cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (394)
.++|+++|..||+.|...|+++..+...+.|||+.++..+. ...+++.+++++|+|++|+||... ...|+.++
T Consensus 378 ~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~----~~~~l~~lk~~gVtI~TIg~G~da---d~~L~~IA 450 (863)
T TIGR00868 378 AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT----ISSCFEEVKQSGAIIHTIALGPSA---AKELEELS 450 (863)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC----HHHHHHHHHHcCCEEEEEEeCCCh---HHHHHHHH
Confidence 57899999999999999998865445667889888776432 345677889999999999999865 25689998
Q ss_pred HHh
Q 016164 160 AAV 162 (394)
Q Consensus 160 ~~v 162 (394)
+.+
T Consensus 451 ~~T 453 (863)
T TIGR00868 451 DMT 453 (863)
T ss_pred Hhc
Confidence 766
No 38
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.41 E-value=1.1e-11 Score=132.49 Aligned_cols=151 Identities=16% Similarity=0.211 Sum_probs=124.6
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~ 84 (394)
.++||||.|.||. .+||..+|.++..|+...+. +..+||||+|++..+++++++|.+...+...|..+.++|.
T Consensus 409 ~v~fvvD~SGSM~-----~~rl~~aK~av~~Ll~~~~~--~~D~v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGg 481 (589)
T TIGR02031 409 LLIFVVDASGSAA-----VARMSEAKGAVELLLGEAYV--HRDQVSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGG 481 (589)
T ss_pred eEEEEEECCCCCC-----hHHHHHHHHHHHHHHHhhcc--CCCEEEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3789999999994 36999999999999985432 4579999999988778999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC--C-------------hhHHHHHHHHHHhCCceEEEEEeCCCCC
Q 016164 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--E-------------KKVLEMIGRKLKKNSVALDIVNFGEDDE 149 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~--d-------------~~~l~~~akkLKknnI~VdiI~fG~e~~ 149 (394)
|.|..||..|...++....+..+.+||||+++-.+. + ..++..+++++++.+|.+.+|++|...
T Consensus 482 TpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~- 560 (589)
T TIGR02031 482 TPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMRF- 560 (589)
T ss_pred CcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCCC-
Confidence 999999999998886432334567889998877652 1 245678899999999999999999764
Q ss_pred CcHHHHHHHHHHhc
Q 016164 150 GNTEKLEALLAAVN 163 (394)
Q Consensus 150 ~n~~~l~~~~~~vn 163 (394)
.....++.|++..+
T Consensus 561 ~~~~~~~~lA~~~~ 574 (589)
T TIGR02031 561 VSTGFAQKLARKMG 574 (589)
T ss_pred ccchHHHHHHHhcC
Confidence 44568999998774
No 39
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.41 E-value=2e-11 Score=106.64 Aligned_cols=140 Identities=12% Similarity=0.144 Sum_probs=106.7
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~ 84 (394)
.++||||.|.||.. +|+..++.++..|+..... +..+|+||+|.++......+.+.+..+++..|..+.++|+
T Consensus 2 ~v~illD~SgSM~~-----~k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~gg 74 (152)
T cd01462 2 PVILLVDQSGSMYG-----APEEVAKAVALALLRIALA--ENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGG 74 (152)
T ss_pred CEEEEEECCCCCCC-----CHHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCC
Confidence 47999999999963 4888888888888877544 4679999999988333334567788889999998889999
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016164 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l 155 (394)
+++..+|..+...+++. +..+..||+|+++.-..++..+.+.++..++.+|+|++||+|... |..+.
T Consensus 75 T~l~~al~~a~~~l~~~--~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~--~~~~~ 141 (152)
T cd01462 75 TDINKALRYALELIERR--DPRKADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGDHG--NPGYD 141 (152)
T ss_pred cCHHHHHHHHHHHHHhc--CCCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCCC--CchHH
Confidence 99999999998887652 334567888887743344455555566677778999999999964 44433
No 40
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.40 E-value=1.2e-11 Score=108.35 Aligned_cols=166 Identities=20% Similarity=0.289 Sum_probs=124.2
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHh-cCc-cc
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACM-HGL-EI 81 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~--D~~kilsaL-~~l-~~ 81 (394)
++|+||.|.||.. .+|+.+++++..|+..+...++..+||||+|++. +.++.+++. +..+++..+ ..+ ..
T Consensus 2 ivflvD~S~sm~~-----~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 75 (178)
T PF00092_consen 2 IVFLVDTSGSMSG-----DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDS-ARVLFSLTDYQSKNDLLNAINDSIPSS 75 (178)
T ss_dssp EEEEEE-STTSCH-----HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSS-EEEEEETTSHSSHHHHHHHHHTTGGCC
T ss_pred EEEEEeCCCCCch-----HHHHHHHHHHHHHHHhhhccccccccceeeeecc-ccccccccccccccccccccccccccc
Confidence 7999999999987 6799999999999998889999999999999988 588888876 478888888 555 56
Q ss_pred cCcccHHHHHHHHHHHhhhc---CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr---~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
+|.+++..||..|...|.++ ..+..++-||+|+++....++.......+..++.+|.+..||+ .. .+.+.|+.|
T Consensus 76 ~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~i~~~~ig~--~~-~~~~~l~~l 152 (178)
T PF00092_consen 76 GGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKSNGIKVIAIGI--DN-ADNEELREL 152 (178)
T ss_dssp BSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHHCTEEEEEEEE--SC-CHHHHHHHH
T ss_pred chhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHhcCcEEEEEec--Cc-CCHHHHHHH
Confidence 78999999999999998764 2245677778888888766444444444444445888777777 33 466788888
Q ss_pred HHHhcCCCCcEEEEcCCCCchhhhh
Q 016164 159 LAAVNNNDSSHLVHVPPGPNALSDV 183 (394)
Q Consensus 159 ~~~vn~~~~S~~v~vp~g~~lLsD~ 183 (394)
+... ....|+..++.-. .|+++
T Consensus 153 a~~~--~~~~~~~~~~~~~-~l~~~ 174 (178)
T PF00092_consen 153 ASCP--TSEGHVFYLADFS-DLSQI 174 (178)
T ss_dssp SHSS--TCHHHEEEESSHH-HHHHH
T ss_pred hCCC--CCCCcEEEcCCHH-HHHHH
Confidence 7422 2456888777643 35544
No 41
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.35 E-value=5.4e-11 Score=128.15 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=124.7
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~ 84 (394)
.++|+||.|.||.. .+||..++.++..|+..-+ .+..+||||+|.|..+++++++|.+...+...|..+.++|.
T Consensus 467 ~vv~vvD~SgSM~~----~~rl~~ak~a~~~ll~~a~--~~~D~v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~gG~ 540 (633)
T TIGR02442 467 LVIFVVDASGSMAA----RGRMAAAKGAVLSLLRDAY--QKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTGGR 540 (633)
T ss_pred eEEEEEECCccCCC----ccHHHHHHHHHHHHHHHhh--cCCCEEEEEEECCCCceEEcCCCCCHHHHHHHHHhCCCCCC
Confidence 58899999999973 3799999999988886532 34689999999987789999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhh--cCCCCCCeEEEEEecCCCCCC------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHH
Q 016164 85 LNLAAGIQVAQLALKH--RQNKKQQQRIIVFVGSPIKHE------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 156 (394)
Q Consensus 85 ~sL~~gL~iA~lALkh--r~~k~~~~RIVlFvgSp~~~d------~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~ 156 (394)
|.|..||..|...|+. +..+..+..||||+++..+.. .++...++++|++.+|.+.+|+.+... .....++
T Consensus 541 Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~~-~~~~~~~ 619 (633)
T TIGR02442 541 TPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESGF-VRLGLAE 619 (633)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCCC-cchhHHH
Confidence 9999999999988873 223446677788877765431 346678899999999999999987754 4567999
Q ss_pred HHHHHhc
Q 016164 157 ALLAAVN 163 (394)
Q Consensus 157 ~~~~~vn 163 (394)
.|++.++
T Consensus 620 ~lA~~~g 626 (633)
T TIGR02442 620 DLARALG 626 (633)
T ss_pred HHHHhhC
Confidence 9998874
No 42
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.34 E-value=2.2e-11 Score=113.75 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=111.1
Q ss_pred EEEEEeCChhhhCCC-C---CCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE------ECCCCCHH---HH
Q 016164 6 TLICIDNSEWMRNGD-Y---APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL------VTPTSDLG---KI 72 (394)
Q Consensus 6 ~vIvIDnSesMrngD-~---~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vL------vtlT~D~~---ki 72 (394)
+||+||.|.||..-+ | ..+||++.+..++.|+. |.+..+..+|| +.|..+ ++ .|||.|.. .+
T Consensus 3 l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~-f~~~r~~DriG---~~g~~~-~~~~lt~d~p~t~d~~~~~~l 77 (191)
T cd01455 3 LKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDG-FEDKIQYDIIG---HSGDGP-CVPFVKTNHPPKNNKERLETL 77 (191)
T ss_pred eEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHH-HHHhCccceee---ecCccc-ccCccccccCcccchhHHHHH
Confidence 799999999996433 2 25899999999988863 34577788999 466642 23 34555554 44
Q ss_pred HHHhcCcccc--C-cccHHHHHHHHHHHhh-hcCCCCCCeEEEEEecCCCCCChhHHHHH-HHHHHhCCceEEEEEeCCC
Q 016164 73 LACMHGLEIG--G-ELNLAAGIQVAQLALK-HRQNKKQQQRIIVFVGSPIKHEKKVLEMI-GRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 73 lsaL~~l~~~--G-~~sL~~gL~iA~lALk-hr~~k~~~~RIVlFvgSp~~~d~~~l~~~-akkLKknnI~VdiI~fG~e 147 (394)
..-|+.++++ | .|. .||.+|...|+ + .+...+.||+|+++.++...-++.++ ++.+++.||+|++||+|..
T Consensus 78 ~~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~--~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~ 153 (191)
T cd01455 78 KMMHAHSQFCWSGDHTV--EATEFAIKELAAK--EDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSL 153 (191)
T ss_pred HHHHHhcccCccCccHH--HHHHHHHHHHHhc--CcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCC
Confidence 4555555543 4 455 99999999997 6 45567888889899887656677775 6888999999999999986
Q ss_pred CCCcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 148 DEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 148 ~~~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
.+ +.|+.+.+.+ ++.+|..-...
T Consensus 154 d~---~~l~~iA~~t---gG~~F~A~d~~ 176 (191)
T cd01455 154 SD---EADQLQRELP---AGKAFVCMDTS 176 (191)
T ss_pred CH---HHHHHHHhCC---CCcEEEeCCHH
Confidence 52 4577666544 45666655443
No 43
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.28 E-value=1e-10 Score=102.58 Aligned_cols=143 Identities=20% Similarity=0.278 Sum_probs=113.4
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECC----C-CCHHHHHHHhcCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTP----T-SDLGKILACMHGL 79 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtl----T-~D~~kilsaL~~l 79 (394)
.+||+||.|.||.-.- ..++++++.+++. .+|..++.||+|+.. +..+.+- | .+....+..|+.+
T Consensus 2 ~vvilvD~S~Sm~g~~------~~~k~al~~~l~~---L~~~d~fnii~f~~~-~~~~~~~~~~~~~~~~~~a~~~I~~~ 71 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK------ELVKDALRAILRS---LPPGDRFNIIAFGSS-VRPLFPGLVPATEENRQEALQWIKSL 71 (155)
T ss_pred eEEEEEeCCCCCCCcH------HHHHHHHHHHHHh---CCCCCEEEEEEeCCE-eeEcchhHHHHhHHHHHHHHHHHHHh
Confidence 4799999999995433 8899999999986 889999999999986 4544422 1 3556678888999
Q ss_pred cc-cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 80 EI-GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 80 ~~-~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
++ .|.+++..+|+.|...+. .+.....||+|+++.....+..+...+++.. .+|+|.+++||... +...|++|
T Consensus 72 ~~~~G~t~l~~aL~~a~~~~~---~~~~~~~IilltDG~~~~~~~~i~~~v~~~~-~~~~i~~~~~g~~~--~~~~L~~L 145 (155)
T PF13768_consen 72 EANSGGTDLLAALRAALALLQ---RPGCVRAIILLTDGQPVSGEEEILDLVRRAR-GHIRIFTFGIGSDA--DADFLREL 145 (155)
T ss_pred cccCCCccHHHHHHHHHHhcc---cCCCccEEEEEEeccCCCCHHHHHHHHHhcC-CCceEEEEEECChh--HHHHHHHH
Confidence 98 999999999998887762 3557888999987775555667777777644 68999999999965 57999999
Q ss_pred HHHhc
Q 016164 159 LAAVN 163 (394)
Q Consensus 159 ~~~vn 163 (394)
....+
T Consensus 146 A~~~~ 150 (155)
T PF13768_consen 146 ARATG 150 (155)
T ss_pred HHcCC
Confidence 97664
No 44
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.27 E-value=4.4e-10 Score=101.51 Aligned_cols=153 Identities=16% Similarity=0.214 Sum_probs=117.9
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCccc-
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGLEI- 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~--D~~kilsaL~~l~~- 81 (394)
-++|+||.|.|+. +..|+.++..+..|++.+.=.+...+||||+|++. +.+...+.. +...++.+|+++..
T Consensus 2 DivfllD~S~Si~-----~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~-~~~~~~l~~~~~~~~l~~~i~~i~~~ 75 (165)
T cd01481 2 DIVFLIDGSDNVG-----SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDT-PRPEFYLNTHSTKADVLGAVRRLRLR 75 (165)
T ss_pred CEEEEEeCCCCcC-----HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCC-eeEEEeccccCCHHHHHHHHHhcccC
Confidence 4799999999984 78899999999999998766667789999999987 677777763 77889999999865
Q ss_pred cC-cccHHHHHHHHHHHhhhcC-----CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016164 82 GG-ELNLAAGIQVAQLALKHRQ-----NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (394)
Q Consensus 82 ~G-~~sL~~gL~iA~lALkhr~-----~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l 155 (394)
+| .++...||..+...+-... .++.++.+|||+++... +++...++.||+.||.|..||.|. .|.+-|
T Consensus 76 ~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~---d~~~~~a~~lr~~gv~i~~vG~~~---~~~~eL 149 (165)
T cd01481 76 GGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQ---DDVERPAVALKRAGIVPFAIGARN---ADLAEL 149 (165)
T ss_pred CCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCc---chHHHHHHHHHHCCcEEEEEeCCc---CCHHHH
Confidence 44 4799999999876553321 12345667788777744 357889999999999999999983 356677
Q ss_pred HHHHHHhcCCCCcEEEEcC
Q 016164 156 EALLAAVNNNDSSHLVHVP 174 (394)
Q Consensus 156 ~~~~~~vn~~~~S~~v~vp 174 (394)
+.++ ++.+|+.+|.
T Consensus 150 ~~ia-----s~p~~vf~v~ 163 (165)
T cd01481 150 QQIA-----FDPSFVFQVS 163 (165)
T ss_pred HHHh-----CCCccEEEec
Confidence 7775 2345766664
No 45
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.26 E-value=2.3e-10 Score=121.33 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=122.6
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC----HHHHHHHhcC--
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD----LGKILACMHG-- 78 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D----~~kilsaL~~-- 78 (394)
.++|+||.|.||. .++++...+..+..|+..+.-+.-..+|||++|++. +.++++++.. ...++..|..
T Consensus 44 DIvFLLD~SgSMg----~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~-~r~vfpL~s~~s~Dk~~aL~~I~sL~ 118 (576)
T PTZ00441 44 DLYLLVDGSGSIG----YHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNN-TTELIRLGSGASKDKEQALIIVKSLR 118 (576)
T ss_pred eEEEEEeCCCccC----CccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCC-ceEEEecCCCccccHHHHHHHHHHHH
Confidence 4899999999996 357788889999999998876666778888999987 6888888754 3456666653
Q ss_pred --ccccCcccHHHHHHHHHHHhhhcCC-CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016164 79 --LEIGGELNLAAGIQVAQLALKHRQN-KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (394)
Q Consensus 79 --l~~~G~~sL~~gL~iA~lALkhr~~-k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l 155 (394)
+.++|.|++..||..|...|+++.+ .+..+.||||+++..+. ..+....+++||+.||.|.+||+|... |.+.|
T Consensus 119 ~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns-~~dvleaAq~LR~~GVeI~vIGVG~g~--n~e~L 195 (576)
T PTZ00441 119 KTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS-KYRALEESRKLKDRNVKLAVIGIGQGI--NHQFN 195 (576)
T ss_pred hhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC-cccHHHHHHHHHHCCCEEEEEEeCCCc--CHHHH
Confidence 4578999999999999888876432 23456677777776433 356667889999999999999999864 56667
Q ss_pred HHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 156 EALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 156 ~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
+.++-.=...++++|+.+..-. .|.+++
T Consensus 196 rlIAgC~p~~g~c~~Y~vadf~-eL~~iv 223 (576)
T PTZ00441 196 RLLAGCRPREGKCKFYSDADWE-EAKNLI 223 (576)
T ss_pred HHHhccCCCCCCCceEEeCCHH-HHHHHH
Confidence 7654210112345555553322 344444
No 46
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.26 E-value=2e-10 Score=105.72 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=112.7
Q ss_pred ceEEEEEeCChhhhCCC--CCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc
Q 016164 4 EATLICIDNSEWMRNGD--YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI 81 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD--~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~ 81 (394)
..++|+||.|.||...+ ..|+||..++.++..++.... ......++++.+.+.. ..+.+++ ...+...+.++.+
T Consensus 3 ~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~-~~D~d~i~l~~f~~~~-~~~~~~~--~~~v~~~~~~~~p 78 (199)
T cd01457 3 RDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCE-EYDSDGITVYLFSGDF-RRYDNVN--SSKVDQLFAENSP 78 (199)
T ss_pred cCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHH-hcCCCCeEEEEecCCc-cccCCcC--HHHHHHHHhcCCC
Confidence 46899999999999887 678999999999999987543 3345569999998873 5556666 7788888888889
Q ss_pred cCcccHHHHHHHHHHHhhhcCC--C-CC-CeEEEEEecCCCCCChhH----HHHHHHHHHh-CCceEEEEEeCCCCCCcH
Q 016164 82 GGELNLAAGIQVAQLALKHRQN--K-KQ-QQRIIVFVGSPIKHEKKV----LEMIGRKLKK-NSVALDIVNFGEDDEGNT 152 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr~~--k-~~-~~RIVlFvgSp~~~d~~~----l~~~akkLKk-nnI~VdiI~fG~e~~~n~ 152 (394)
.|.+++..+|+.|...+..+.. . .+ ..-||||+++..+. ... |.+.+++|++ ++|.+.+|++|... ...
T Consensus 79 ~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d-~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~-~~~ 156 (199)
T cd01457 79 DGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD-KDAVERVIIKASDELDADNELAISFLQIGRDP-AAT 156 (199)
T ss_pred CCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc-HHHHHHHHHHHHHhhccccCceEEEEEeCCcH-HHH
Confidence 9999999999999755543211 1 11 45566666776543 333 3455555544 47999999999976 567
Q ss_pred HHHHHHHHHh
Q 016164 153 EKLEALLAAV 162 (394)
Q Consensus 153 ~~l~~~~~~v 162 (394)
..|+.|-+..
T Consensus 157 ~~L~~ld~~~ 166 (199)
T cd01457 157 AFLKALDDQL 166 (199)
T ss_pred HHHHHHhHHH
Confidence 7888887654
No 47
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.22 E-value=7.8e-10 Score=107.22 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=128.1
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~ 84 (394)
=+||+||-|.||+. ..|+.++|-++..|++.=.+. .++|+||+|.|..++|+++||.+...+-..|..+.++|.
T Consensus 80 lvvfvVDASgSM~~----~~Rm~aaKG~~~~lL~dAYq~--RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~ 153 (261)
T COG1240 80 LIVFVVDASGSMAA----RRRMAAAKGAALSLLRDAYQR--RDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGK 153 (261)
T ss_pred cEEEEEeCcccchh----HHHHHHHHHHHHHHHHHHHHc--cceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCC
Confidence 37999999999984 569999999999998874443 579999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhhcC--CCCCCeEEEEEecCCCCC----C-hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 016164 85 LNLAAGIQVAQLALKHRQ--NKKQQQRIIVFVGSPIKH----E-KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 157 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr~--~k~~~~RIVlFvgSp~~~----d-~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~ 157 (394)
|-|..||++|...+.... ++.....+|+++++-.+. + ..+....+.++...++.+-||++-... .-..+.+.
T Consensus 154 TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~-~~~g~~~~ 232 (261)
T COG1240 154 TPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE-VRLGLAEE 232 (261)
T ss_pred CchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc-ccccHHHH
Confidence 999999999998886532 445778888888776652 3 357788899999999999999998776 45667788
Q ss_pred HHHHh
Q 016164 158 LLAAV 162 (394)
Q Consensus 158 ~~~~v 162 (394)
++...
T Consensus 233 iA~~~ 237 (261)
T COG1240 233 IARAS 237 (261)
T ss_pred HHHHh
Confidence 88766
No 48
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=99.12 E-value=1.9e-09 Score=115.11 Aligned_cols=145 Identities=16% Similarity=0.208 Sum_probs=110.5
Q ss_pred ceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC-----CHHHHHHHhcC
Q 016164 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS-----DLGKILACMHG 78 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~-----D~~kilsaL~~ 78 (394)
..++||||.|.||.. .+++.++.++..++.. .+|..+++||+|.+. ++++.+.+. +..+++..|..
T Consensus 272 ~~vvfvlD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~~~ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~ 342 (596)
T TIGR03788 272 RELVFVIDTSGSMAG-----ESIEQAKSALLLALDQ---LRPGDRFNIIQFDSD-VTLLFPVPVPATAHNLARARQFVAG 342 (596)
T ss_pred ceEEEEEECCCCCCC-----ccHHHHHHHHHHHHHh---CCCCCEEEEEEECCc-ceEeccccccCCHHHHHHHHHHHhh
Confidence 358999999999984 3578889999888875 789999999999887 577755432 34567778889
Q ss_pred ccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 79 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
+.++|+++|..+|+.|...+... .+...++||+|+++... ++..+.+.++. +..+++|++||||... |...|+.+
T Consensus 343 l~a~GgT~l~~aL~~a~~~~~~~-~~~~~~~iillTDG~~~-~~~~~~~~~~~-~~~~~ri~tvGiG~~~--n~~lL~~l 417 (596)
T TIGR03788 343 LQADGGTEMAGALSAALRDDGPE-SSGALRQVVFLTDGAVG-NEDALFQLIRT-KLGDSRLFTVGIGSAP--NSYFMRKA 417 (596)
T ss_pred CCCCCCccHHHHHHHHHHhhccc-CCCceeEEEEEeCCCCC-CHHHHHHHHHH-hcCCceEEEEEeCCCc--CHHHHHHH
Confidence 99999999999999987664332 23455678888888643 45666666644 3457999999999874 67899999
Q ss_pred HHHh
Q 016164 159 LAAV 162 (394)
Q Consensus 159 ~~~v 162 (394)
.+..
T Consensus 418 A~~g 421 (596)
T TIGR03788 418 AQFG 421 (596)
T ss_pred HHcC
Confidence 8653
No 49
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=3.2e-07 Score=90.46 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=121.2
Q ss_pred eEEEEEeCChhhh---CCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC---------CH---
Q 016164 5 ATLICIDNSEWMR---NGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS---------DL--- 69 (394)
Q Consensus 5 a~vIvIDnSesMr---ngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~---------D~--- 69 (394)
-++|+||.+..-- ..+=.+.-|....+++-.|+++++-.|..|+|.||+....+...|-|-+. +.
T Consensus 4 lL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~~ 83 (279)
T TIGR00627 4 LLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKRL 83 (279)
T ss_pred EEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCccccccccccccccc
Confidence 4689999987542 22212557888889999999999999999999999998777666644321 10
Q ss_pred ------------HHHHHHhcCc----cc----cCcccHHHHHHHHHHHhhhcC-----CCCCCeEEEEEecCCCCC-Chh
Q 016164 70 ------------GKILACMHGL----EI----GGELNLAAGIQVAQLALKHRQ-----NKKQQQRIIVFVGSPIKH-EKK 123 (394)
Q Consensus 70 ------------~kilsaL~~l----~~----~G~~sL~~gL~iA~lALkhr~-----~k~~~~RIVlFvgSp~~~-d~~ 123 (394)
..++..|..+ .. .+++.|.-||.+|+-.+..+. ....+.||+||.+|+... .-.
T Consensus 84 ~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~~~~~qYi 163 (279)
T TIGR00627 84 RELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITPDMALQYI 163 (279)
T ss_pred cchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCCCchHHHH
Confidence 0134444321 11 146678889998876664321 234689999999988644 234
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhhhc
Q 016164 124 VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 124 ~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l~s 186 (394)
.+..++..++|.||+||+|+++.+. ...+|+++++.++| -|.+++...+ |.+.|+.
T Consensus 164 ~~mn~Ifaaqk~~I~Idv~~L~~e~--~~~~lqQa~~~TgG----~Y~~~~~~~~-L~q~L~~ 219 (279)
T TIGR00627 164 PLMNCIFSAQKQNIPIDVVSIGGDF--TSGFLQQAADITGG----SYLHVKKPQG-LLQYLMT 219 (279)
T ss_pred HHHHHHHHHHHcCceEEEEEeCCcc--ccHHHHHHHHHhCC----EEeccCCHhH-HHHHHHH
Confidence 5679999999999999999999761 23599999999963 3444444445 6677655
No 50
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=98.69 E-value=4.1e-07 Score=84.92 Aligned_cols=140 Identities=24% Similarity=0.293 Sum_probs=95.1
Q ss_pred eEEEEEeCChhhhCCCCCC-cHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCC------------ccEEEECCCCCHHH
Q 016164 5 ATLICIDNSEWMRNGDYAP-SRFQAQTEAANLICGAKTQLNPENTVGVMTMAGK------------GVRVLVTPTSDLGK 71 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~P-sRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~------------~a~vLvtlT~D~~k 71 (394)
||++|||+|.+|-...-.. .+|..+.+++..++..|.-.+|...||||.++-. ...++.+++.---+
T Consensus 1 ~~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~ 80 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAE 80 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHH
T ss_pred CEEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHH
Confidence 6899999999998443221 1899999999999999999999999999999732 23566666654444
Q ss_pred HHHHhcCc-cc----------cCcccHHHHHHHHHHHhhh--cCCCCCCeEEEEEecCCCCC-ChhHHHHHHHH-----H
Q 016164 72 ILACMHGL-EI----------GGELNLAAGIQVAQLALKH--RQNKKQQQRIIVFVGSPIKH-EKKVLEMIGRK-----L 132 (394)
Q Consensus 72 ilsaL~~l-~~----------~G~~sL~~gL~iA~lALkh--r~~k~~~~RIVlFvgSp~~~-d~~~l~~~akk-----L 132 (394)
.+..|..+ .. ....++..+|.+|...|++ ...+...+|||+|+...... +..++..++++ +
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~~~~~~~~~~~l~~~Dl 160 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHEDDDELERIIQKLKAKDL 160 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCHHHHHHHHHhhccccc
Confidence 55555443 33 4568999999999999986 33455789999998444433 55555555554 9
Q ss_pred HhCCceEEEEEe
Q 016164 133 KKNSVALDIVNF 144 (394)
Q Consensus 133 KknnI~VdiI~f 144 (394)
+.++|.+.++.+
T Consensus 161 ~~~~i~~~~~~l 172 (224)
T PF03731_consen 161 QDNGIEIELFFL 172 (224)
T ss_dssp HHHTEEEEEEEC
T ss_pred hhcCcceeEeec
Confidence 999999999999
No 51
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=98.56 E-value=2.6e-06 Score=91.58 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=105.9
Q ss_pred cceEEEEEeCChhhhCCCC---CCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCC---------ccEEEECCCCCHH
Q 016164 3 LEATLICIDNSEWMRNGDY---APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGK---------GVRVLVTPTSDLG 70 (394)
Q Consensus 3 lEa~vIvIDnSesMrngD~---~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~---------~a~vLvtlT~D~~ 70 (394)
-|++++|||+|.+|-...- ..++|..+..++..+++.+.=.+|...||||.|+-+ .+.|+.++..--.
T Consensus 10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a 89 (584)
T TIGR00578 10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGA 89 (584)
T ss_pred eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCH
Confidence 4899999999999996321 258999999999999999999999999999999643 2455666664444
Q ss_pred HHHHHhcCccc------------cCc-ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecC--CCCCC--hhHH-HHHHHHH
Q 016164 71 KILACMHGLEI------------GGE-LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS--PIKHE--KKVL-EMIGRKL 132 (394)
Q Consensus 71 kilsaL~~l~~------------~G~-~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgS--p~~~d--~~~l-~~~akkL 132 (394)
+.+..|..+.. .++ .+|.++|-+|...|.....+...+||++|++- |...+ ..+. ...|+.|
T Consensus 90 ~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~~~~~~~a~~~a~dl 169 (584)
T TIGR00578 90 KRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDL 169 (584)
T ss_pred HHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCchhHHHHHHHHHHHH
Confidence 44444443322 122 48899999999999765445678999999844 44332 1122 4579999
Q ss_pred HhCCceEEEEEeCC
Q 016164 133 KKNSVALDIVNFGE 146 (394)
Q Consensus 133 KknnI~VdiI~fG~ 146 (394)
++.+|.+.++.+..
T Consensus 170 ~~~gi~ielf~l~~ 183 (584)
T TIGR00578 170 RDTGIFLDLMHLKK 183 (584)
T ss_pred HhcCeEEEEEecCC
Confidence 99999999997654
No 52
>PRK10997 yieM hypothetical protein; Provisional
Probab=98.44 E-value=5.6e-06 Score=87.29 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=93.3
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~ 84 (394)
-++||||.|.||. | + |. .+++..+-.++. .-.....+++++.|.+.....-.++.....+++..|... .+|+
T Consensus 325 piII~VDtSGSM~-G-~-ke--~~AkalAaAL~~--iAl~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~~-f~GG 396 (487)
T PRK10997 325 PFIVCVDTSGSMG-G-F-NE--QCAKAFCLALMR--IALAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQS-FRGG 396 (487)
T ss_pred cEEEEEECCCCCC-C-C-HH--HHHHHHHHHHHH--HHHhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHHh-cCCC
Confidence 3799999999996 3 2 33 333432222222 124456689999999875332244555678888888755 5899
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC--ChhHHHHHHHHHHh-CCceEEEEEeCCCCCCcHHHHHH
Q 016164 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--EKKVLEMIGRKLKK-NSVALDIVNFGEDDEGNTEKLEA 157 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~--d~~~l~~~akkLKk-nnI~VdiI~fG~e~~~n~~~l~~ 157 (394)
|+|..+|..+...++.+ . .++- +|||-|+.-. -++++.+..+.||+ .+.+++.|.+|... |..+++.
T Consensus 397 TDl~~aL~~al~~l~~~--~-~r~a-dIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~--~p~l~~i 466 (487)
T PRK10997 397 TDLAPCLRAIIEKMQGR--E-WFDA-DAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHG--KPGIMRI 466 (487)
T ss_pred CcHHHHHHHHHHHHccc--c-cCCc-eEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCC--CchHHHh
Confidence 99999999998888652 1 2222 3334455533 36789999999988 89999999999643 4455443
No 53
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=98.34 E-value=2.1e-05 Score=74.40 Aligned_cols=170 Identities=16% Similarity=0.205 Sum_probs=117.5
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC-CHHHHHHHhcC----c
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS-DLGKILACMHG----L 79 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~-D~~kilsaL~~----l 79 (394)
.|++|||.|.||+ +=|+--+.|...+=+=-+... ..+..+|=+.+|+.+ +..+-++|- |+...+..+|. +
T Consensus 3 rV~LVLD~SGSM~-~~yk~G~vQ~~~Er~lalA~~---~DdDG~i~v~~Fs~~-~~~~~~vt~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 3 RVYLVLDISGSMR-PLYKDGTVQRVVERILALAAQ---FDDDGEIDVWFFSTE-FDRLPDVTLDNYEGYVDELHAGLPDW 77 (200)
T ss_pred EEEEEEeCCCCCc-hhhhCccHHHHHHHHHHHHhh---cCCCCceEEEEeCCC-CCcCCCcCHHHHHHHHHHHhcccccc
Confidence 4789999999998 455555666554433333332 445677888999887 566666663 45555555543 2
Q ss_pred cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
..-|.++..-+|+-.......+.....+. .|||+ ++... +...+.++++...+..|-...||||...+ .+|++|
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~~~~~P~-~VlFiTDG~~~-~~~~~~~~i~~as~~pifwqFVgiG~~~f---~fL~kL 152 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKREPSDAPA-LVLFITDGGPD-DRRAIEKLIREASDEPIFWQFVGIGDSNF---GFLEKL 152 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcCCCCCCe-EEEEEecCCcc-chHHHHHHHHhccCCCeeEEEEEecCCcc---hHHHHh
Confidence 44577999999999987776443333344 45554 55543 67889999999999999999999999885 799998
Q ss_pred HHHhcCC--CCcEEEEcCCCC----chhhhhhh
Q 016164 159 LAAVNNN--DSSHLVHVPPGP----NALSDVLL 185 (394)
Q Consensus 159 ~~~vn~~--~~S~~v~vp~g~----~lLsD~l~ 185 (394)
-+ +.+- +|..|.++..-+ .-|+|.|+
T Consensus 153 D~-l~gR~vDNa~Ff~~~d~~~lsD~eLy~~LL 184 (200)
T PF10138_consen 153 DD-LAGRVVDNAGFFAIDDIDELSDEELYDRLL 184 (200)
T ss_pred hc-cCCcccCCcCeEecCCcccCCHHHHHHHHH
Confidence 75 3332 788888887643 22566664
No 54
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=98.33 E-value=1e-05 Score=77.91 Aligned_cols=148 Identities=19% Similarity=0.169 Sum_probs=101.8
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE----------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL---------------------- 62 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vL---------------------- 62 (394)
+.++|||+|..-.+.- =++..++++...+...-..+|...||||||... ..+.
T Consensus 5 ~~~FvIDvs~~a~~~g----~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~-v~~y~l~~~~~~~q~~vv~dl~d~f~ 79 (244)
T cd01479 5 VYVFLIDVSYNAIKSG----LLATACEALLSNLDNLPGDDPRTRVGFITFDST-LHFFNLKSSLEQPQMMVVSDLDDPFL 79 (244)
T ss_pred EEEEEEEccHHHHhhC----hHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCe-EEEEECCCCCCCCeEEEeeCcccccC
Confidence 5789999997654321 246777777777775333337799999999863 2221
Q ss_pred -------ECCCCCHHHHHHHhcCcc------ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChh------
Q 016164 63 -------VTPTSDLGKILACMHGLE------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKK------ 123 (394)
Q Consensus 63 -------vtlT~D~~kilsaL~~l~------~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~------ 123 (394)
+++......|...|+++. ......++.||++|..+|++ ..-||++|++++-+..++
T Consensus 80 P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~-----~GGkIi~f~s~~pt~GpG~l~~~~ 154 (244)
T cd01479 80 PLPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKE-----TGGKIIVFQSSLPTLGAGKLKSRE 154 (244)
T ss_pred CCCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHh-----cCCEEEEEeCCCCCcCCcccccCc
Confidence 111222344455555541 12368899999999999996 446999999887542111
Q ss_pred -------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 124 -------------------VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 124 -------------------~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
--.+++.++.+++|.||+..++... -...-+..+++.++
T Consensus 155 ~~~~~~~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~-~dla~l~~l~~~TG 212 (244)
T cd01479 155 DPKLLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQY-VDVATLGCLSRLTG 212 (244)
T ss_pred cccccCchhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcc-cChhhhhhhhhhcC
Confidence 2236899999999999999998876 56778899997774
No 55
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.30 E-value=3.3e-05 Score=73.63 Aligned_cols=150 Identities=21% Similarity=0.181 Sum_probs=105.5
Q ss_pred ceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE--------------------
Q 016164 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV-------------------- 63 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLv-------------------- 63 (394)
=+.+++||.|....+ ..-++..++++...+... ..++..+||||||.+. ..+.-
T Consensus 4 p~~vFvID~s~~ai~----~~~l~~~~~sl~~~l~~l-p~~~~~~igiITf~~~-V~~~~~~~~~~~~~~~v~~dl~d~f 77 (239)
T cd01468 4 PVFVFVIDVSYEAIK----EGLLQALKESLLASLDLL-PGDPRARVGLITYDST-VHFYNLSSDLAQPKMYVVSDLKDVF 77 (239)
T ss_pred CEEEEEEEcchHhcc----ccHHHHHHHHHHHHHHhC-CCCCCcEEEEEEeCCe-EEEEECCCCCCCCeEEEeCCCccCc
Confidence 367999999987644 344678888888888753 1248899999999643 33321
Q ss_pred -C--------CCCCHHHHHHHhcCccc--------cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChh---
Q 016164 64 -T--------PTSDLGKILACMHGLEI--------GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKK--- 123 (394)
Q Consensus 64 -t--------lT~D~~kilsaL~~l~~--------~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~--- 123 (394)
+ +......|...|+++.. .....++.||++|...|+++- ..-||++|++++-+..++
T Consensus 78 ~p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~---~gGkI~~f~sg~pt~GpG~l~ 154 (239)
T cd01468 78 LPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF---AGGRIIVFQGGLPTVGPGKLK 154 (239)
T ss_pred CCCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC---CCceEEEEECCCCCCCCCccc
Confidence 1 11111344455555422 235889999999999999852 578999999887752222
Q ss_pred ----------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 124 ----------------------VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 124 ----------------------~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
--.++++++.+++|.||+..++... -...-+..++..++
T Consensus 155 ~~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~-~dl~~l~~l~~~TG 215 (239)
T cd01468 155 SREDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDY-VDVATLKQLAKSTG 215 (239)
T ss_pred cCcccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccc-cCHHHhhhhhhcCC
Confidence 2357899999999999999999876 56778888887764
No 56
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=98.20 E-value=3.1e-05 Score=75.78 Aligned_cols=145 Identities=18% Similarity=0.183 Sum_probs=102.0
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE---------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV--------------------- 63 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLv--------------------- 63 (394)
..++|||+|..-. .+++.++++...+.. ..+..+||||||... +.+.-
T Consensus 5 ~~vFviDvs~~~~-------el~~l~~sl~~~L~~---lP~~a~VGlITfd~~-V~~~~L~~~~~~~~~vf~g~~~~~~~ 73 (267)
T cd01478 5 VFLFVVDTCMDEE-------ELDALKESLIMSLSL---LPPNALVGLITFGTM-VQVHELGFEECSKSYVFRGNKDYTAK 73 (267)
T ss_pred EEEEEEECccCHH-------HHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEEcCCCcCceeeeccCCccCCHH
Confidence 4689999997422 377888888777765 677889999999754 33321
Q ss_pred -------------------------------------CCCCCHHHHHHHhcCccc---------cCcccHHHHHHHHHHH
Q 016164 64 -------------------------------------TPTSDLGKILACMHGLEI---------GGELNLAAGIQVAQLA 97 (394)
Q Consensus 64 -------------------------------------tlT~D~~kilsaL~~l~~---------~G~~sL~~gL~iA~lA 97 (394)
++......|...|+.+.. .....++.||++|..+
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~l 153 (267)
T cd01478 74 QIQDMLGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGL 153 (267)
T ss_pred HHHHHhccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHH
Confidence 111112233444555532 1357899999999999
Q ss_pred hhhcCCCCCCeEEEEEecCCCCCChhH------------------------------HHHHHHHHHhCCceEEEEEeCCC
Q 016164 98 LKHRQNKKQQQRIIVFVGSPIKHEKKV------------------------------LEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 98 Lkhr~~k~~~~RIVlFvgSp~~~d~~~------------------------------l~~~akkLKknnI~VdiI~fG~e 147 (394)
|++. -++..-||++|++++-+..++. -.++++++.+++|.||+..++..
T Consensus 154 l~~~-~~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d 232 (267)
T cd01478 154 LEAC-FPNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLD 232 (267)
T ss_pred HHhh-cCCCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEecccc
Confidence 9864 3457889999999877522211 12478888999999999999987
Q ss_pred CCCcHHHHHHHHHHh
Q 016164 148 DEGNTEKLEALLAAV 162 (394)
Q Consensus 148 ~~~n~~~l~~~~~~v 162 (394)
. --..-+..+++.+
T Consensus 233 ~-vglaem~~l~~~T 246 (267)
T cd01478 233 Q-VGLLEMKVLVNST 246 (267)
T ss_pred c-cCHHHHHHHHHhc
Confidence 6 5677888888766
No 57
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.13 E-value=5.2e-05 Score=72.18 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=99.0
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE----------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL---------------------- 62 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vL---------------------- 62 (394)
+.++|||+|....+ ...++..++++...++..- .++..+||||||... ..+.
T Consensus 5 ~y~FvID~s~~av~----~g~~~~~~~sl~~~l~~l~-~~~~~~vgiitfd~~-V~~y~l~~~~~~~~~~v~~dl~~~~~ 78 (243)
T PF04811_consen 5 VYVFVIDVSYEAVQ----SGLLQSLIESLKSALDSLP-GDERTRVGIITFDSS-VHFYNLSSSLSQPQMIVVSDLDDPFI 78 (243)
T ss_dssp EEEEEEE-SHHHHH----HTHHHHHHHHHHHHGCTSS-TSTT-EEEEEEESSS-EEEEETTTTSSSTEEEEEHHTTSHHS
T ss_pred EEEEEEECchhhhh----ccHHHHHHHHHHHHHHhcc-CCCCcEEEEEEeCCE-EEEEECCCCcCCCcccchHHHhhccc
Confidence 57899999965322 3467888888888886532 559999999999754 4443
Q ss_pred -------ECCCCCHHHHHHHhcCcc--------ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCCh-----
Q 016164 63 -------VTPTSDLGKILACMHGLE--------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK----- 122 (394)
Q Consensus 63 -------vtlT~D~~kilsaL~~l~--------~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~----- 122 (394)
+++......|...|+.+. ......++.||++|...|+.+. ..-||++|..|+-+..+
T Consensus 79 p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~---~gGkI~~F~s~~pt~G~Gg~l~ 155 (243)
T PF04811_consen 79 PLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRN---TGGKILVFTSGPPTYGPGGSLK 155 (243)
T ss_dssp STSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHT---S-EEEEEEESS---SSSTTSS-
T ss_pred CCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccc---cCCEEEEEeccCCCCCCCceec
Confidence 222233444555555441 2346889999999999999542 67899999988764322
Q ss_pred ----------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 123 ----------------------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 123 ----------------------~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
+-..++++++.+.+|.||+..++... -...-|..++..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~-~~l~tl~~l~~~T 216 (243)
T PF04811_consen 156 KREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDY-VDLATLGPLARYT 216 (243)
T ss_dssp SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS---SHHHHTHHHHCT
T ss_pred ccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCC-CCcHhHHHHHHhC
Confidence 13478999999999999999999987 6788899998766
No 58
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=98.10 E-value=7.1e-05 Score=70.28 Aligned_cols=144 Identities=13% Similarity=0.183 Sum_probs=95.6
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcC----CeEEEEEecCCccEEEECCCCCHHHHHHH-hcCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPE----NTVGVMTMAGKGVRVLVTPTSDLGKILAC-MHGL 79 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPe----s~VGLVtmag~~a~vLvtlT~D~~kilsa-L~~l 79 (394)
-|++++|+|.||+- .|+++....+..+++.+ .++|. .-++||||+|. +.+.+++|. +.++ ...+
T Consensus 5 P~~lllDtSgSM~G-----e~IealN~Glq~m~~~L-kqdp~Ale~v~lsIVTF~~~-a~~~~pf~~----~~nF~~p~L 73 (207)
T COG4245 5 PCYLLLDTSGSMIG-----EPIEALNAGLQMMIDTL-KQDPYALERVELSIVTFGGP-ARVIQPFTD----AANFNPPIL 73 (207)
T ss_pred CEEEEEecCccccc-----ccHHHHHHHHHHHHHHH-HhChhhhheeEEEEEEecCc-ceEEechhh----HhhcCCCce
Confidence 48999999999974 68999999999999985 45554 57899999995 788888774 2222 1234
Q ss_pred cccCcccHHHHHHHHHHHhhhcC-------CCCCCeEEEEEecCCCCCChhHHHHHHHHHHh--CCceEEEEEeCCCCCC
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQ-------NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKK--NSVALDIVNFGEDDEG 150 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~-------~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKk--nnI~VdiI~fG~e~~~ 150 (394)
...|++.++.||+.|......|- .+.+|--++++.+|.-+++ --..++....+ .+.+|-.++||... .
T Consensus 74 ~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~--w~~~~~~~~~~~~~~k~v~a~~~G~~~-a 150 (207)
T COG4245 74 TAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDD--WQAGAALVFQGERRAKSVAAFSVGVQG-A 150 (207)
T ss_pred ecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchH--HHhHHHHhhhcccccceEEEEEecccc-c
Confidence 66799999999999988876541 1224444444443332322 11222222222 23455666777775 5
Q ss_pred cHHHHHHHHHHh
Q 016164 151 NTEKLEALLAAV 162 (394)
Q Consensus 151 n~~~l~~~~~~v 162 (394)
+.+.|+++.++|
T Consensus 151 d~~~L~qit~~V 162 (207)
T COG4245 151 DNKTLNQITEKV 162 (207)
T ss_pred ccHHHHHHHHhh
Confidence 678899988777
No 59
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=97.95 E-value=0.00061 Score=67.32 Aligned_cols=173 Identities=19% Similarity=0.185 Sum_probs=118.4
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--------C--------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--------D-------- 68 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~--------D-------- 68 (394)
-++|+||.+..--..=-.+..|....+++-.|++.++-.|..|+|.||+....+.+.|-|... +
T Consensus 3 LLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~ 82 (276)
T PF03850_consen 3 LLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDS 82 (276)
T ss_pred EEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCccccccccc
Confidence 468999998654322222378888899999999999999999999999998887777755443 0
Q ss_pred ---------HHHHHHHhcCc----cc----cCcccHHHHHHHHHHHhhhcC------CCCCCeEEEE-EecCCCCCC-hh
Q 016164 69 ---------LGKILACMHGL----EI----GGELNLAAGIQVAQLALKHRQ------NKKQQQRIIV-FVGSPIKHE-KK 123 (394)
Q Consensus 69 ---------~~kilsaL~~l----~~----~G~~sL~~gL~iA~lALkhr~------~k~~~~RIVl-FvgSp~~~d-~~ 123 (394)
-..++..|+++ .. ...+.|..||.+|+-.+..+. +...+.||+| +.+|+.... --
T Consensus 83 ~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi 162 (276)
T PF03850_consen 83 NKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYI 162 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHH
Confidence 01223333332 11 112788889999876664331 1356789999 667775542 23
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhhh
Q 016164 124 VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLL 185 (394)
Q Consensus 124 ~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l~ 185 (394)
.+-..+-.+.|.+|.||++.+|... ...|++.++.++| -|+.++.... |...|+
T Consensus 163 ~~MN~iFaAqk~~v~IDv~~L~~~~---s~fLqQa~d~T~G----~y~~~~~~~~-l~q~L~ 216 (276)
T PF03850_consen 163 PLMNCIFAAQKQKVPIDVCKLGGKD---STFLQQASDITGG----IYLKVSKPEG-LLQYLL 216 (276)
T ss_pred HHHHHHHHHhcCCceeEEEEecCCc---hHHHHHHHHHhCc----eeeccCcccc-HHHHHH
Confidence 4557888999999999999999832 4699999988853 4555555433 445554
No 60
>PLN00162 transport protein sec23; Provisional
Probab=97.74 E-value=0.00041 Score=77.08 Aligned_cols=146 Identities=18% Similarity=0.189 Sum_probs=99.3
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE---------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV--------------------- 63 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLv--------------------- 63 (394)
+.++|||+|-.- ..++..++++...+.. .++...||||||... +.+.-
T Consensus 126 ~fvFvID~s~~~-------~~l~~lk~sl~~~L~~---LP~~a~VGlITF~s~-V~~~~L~~~~~~~~~Vf~g~k~~t~~ 194 (761)
T PLN00162 126 VFVFVVDTCMIE-------EELGALKSALLQAIAL---LPENALVGLITFGTH-VHVHELGFSECSKSYVFRGNKEVSKD 194 (761)
T ss_pred EEEEEEecchhH-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEEcCCCCCcceEEecCCccCCHH
Confidence 678999999432 3477777777777764 677899999999864 33321
Q ss_pred -------------------------------------CCCCCHHHHHHHhcCccc------cC---cccHHHHHHHHHHH
Q 016164 64 -------------------------------------TPTSDLGKILACMHGLEI------GG---ELNLAAGIQVAQLA 97 (394)
Q Consensus 64 -------------------------------------tlT~D~~kilsaL~~l~~------~G---~~sL~~gL~iA~lA 97 (394)
++..-...|-+.|..|.. .+ ...++.||++|...
T Consensus 195 ~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~l 274 (761)
T PLN00162 195 QILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGL 274 (761)
T ss_pred HHHHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHH
Confidence 000000122233333321 12 57799999999999
Q ss_pred hhhcCCCCCCeEEEEEecCCCCCChhH------------------------------HHHHHHHHHhCCceEEEEEeCCC
Q 016164 98 LKHRQNKKQQQRIIVFVGSPIKHEKKV------------------------------LEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 98 Lkhr~~k~~~~RIVlFvgSp~~~d~~~------------------------------l~~~akkLKknnI~VdiI~fG~e 147 (394)
|+.. .++...||++|+++|-+..++. -.++++++.+++|.||+..++..
T Consensus 275 L~~~-~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~d 353 (761)
T PLN00162 275 LGAC-VPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLD 353 (761)
T ss_pred Hhhc-cCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEcccc
Confidence 9864 3467899999999986422211 13578899999999999999987
Q ss_pred CCCcHHHHHHHHHHhc
Q 016164 148 DEGNTEKLEALLAAVN 163 (394)
Q Consensus 148 ~~~n~~~l~~~~~~vn 163 (394)
. --..-++.+++.+.
T Consensus 354 q-vglaem~~l~~~TG 368 (761)
T PLN00162 354 Q-VGVAEMKVAVERTG 368 (761)
T ss_pred c-cCHHHHhhhHhhcC
Confidence 6 45677888887663
No 61
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=97.70 E-value=0.00074 Score=64.05 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=85.2
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhc--Ccc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMH--GLE 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~D~~kilsaL~--~l~ 80 (394)
-++||+|+|.||.. | ++ .+-.|+.....+.+ .|.++.|.... ..++.+- .|+.+.+..+. ...
T Consensus 59 ~lvvl~DvSGSM~~--~--s~------~~l~~~~~l~~~~~--~~~~f~F~~~l-~~vT~~l~~~~~~~~l~~~~~~~~~ 125 (222)
T PF05762_consen 59 RLVVLCDVSGSMAG--Y--SE------FMLAFLYALQRQFR--RVRVFVFSTRL-TEVTPLLRRRDPEEALARLSALVQS 125 (222)
T ss_pred cEEEEEeCCCChHH--H--HH------HHHHHHHHHHHhCC--CEEEEEEeeeh-hhhhhhhccCCHHHHHHHHHhhccC
Confidence 48999999999963 2 22 22235555555555 89999998763 3333332 36666666665 234
Q ss_pred ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
.+|+|++..+|..+...+.. ..-.+.-+||+.++--+.+...+....++|+..+.+|..++
T Consensus 126 ~~GgTdi~~aL~~~~~~~~~--~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLn 186 (222)
T PF05762_consen 126 FGGGTDIGQALREFLRQYAR--PDLRRTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLN 186 (222)
T ss_pred CCCccHHHHHHHHHHHHhhc--ccccCcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEEC
Confidence 78999999999999877652 12245666777677556678888999999999998776654
No 62
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.57 E-value=0.0015 Score=68.41 Aligned_cols=132 Identities=15% Similarity=0.120 Sum_probs=97.3
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE-ECCCCCHHHHHHHhcCccccCc
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL-VTPTSDLGKILACMHGLEIGGE 84 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vL-vtlT~D~~kilsaL~~l~~~G~ 84 (394)
+++|||-|.||.= ++.++++..+-.++..=...| -.+.++.|.....++- .++..+..+++.+|..+-.+|
T Consensus 275 villlD~SGSM~G-----~~e~~AKAvalAl~~~alaen--R~~~~~lF~s~~~~~el~~k~~~~~e~i~fL~~~f~GG- 346 (437)
T COG2425 275 VILLLDKSGSMSG-----FKEQWAKAVALALMRIALAEN--RDCYVILFDSEVIEYELYEKKIDIEELIEFLSYVFGGG- 346 (437)
T ss_pred EEEEEeCCCCcCC-----cHHHHHHHHHHHHHHHHHHhc--cceEEEEecccceeeeecCCccCHHHHHHHHhhhcCCC-
Confidence 7999999999963 455666654444444322332 2599999988544443 456779999999999998778
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHH-HHHhCCceEEEEEeCCCC
Q 016164 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGR-KLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ak-kLKknnI~VdiI~fG~e~ 148 (394)
|+|..+|..|...+|.+. ....-||+++++...-. .++....+ ..|+.+.+|+.|.+|...
T Consensus 347 TD~~~~l~~al~~~k~~~--~~~adiv~ITDg~~~~~-~~~~~~v~e~~k~~~~rl~aV~I~~~~ 408 (437)
T COG2425 347 TDITKALRSALEDLKSRE--LFKADIVVITDGEDERL-DDFLRKVKELKKRRNARLHAVLIGGYG 408 (437)
T ss_pred CChHHHHHHHHHHhhccc--ccCCCEEEEeccHhhhh-hHHHHHHHHHHHHhhceEEEEEecCCC
Confidence 999999999999999754 34488888887775555 45555544 445899999999999865
No 63
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=97.20 E-value=0.034 Score=53.76 Aligned_cols=157 Identities=17% Similarity=0.254 Sum_probs=104.9
Q ss_pred cceEEEEEeCChhhhCCCCCCc-HHHHHHHHHHHHHHH------hccCCcCCeEEEEEecCCc----cEE-EECCCCCHH
Q 016164 3 LEATLICIDNSEWMRNGDYAPS-RFQAQTEAANLICGA------KTQLNPENTVGVMTMAGKG----VRV-LVTPTSDLG 70 (394)
Q Consensus 3 lEa~vIvIDnSesMrngD~~Ps-Rl~Aq~~Av~~fv~~------k~~~NPes~VGLVtmag~~----a~v-LvtlT~D~~ 70 (394)
..-+|+|||-+-.| |=|-|+ |=.-..-.++.|... +...+..+.+|||+|.... +-| ...+|.|+.
T Consensus 13 ~~~vVfvvEgTAal--gpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~ 90 (226)
T PF11265_consen 13 QAQVVFVVEGTAAL--GPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQ 90 (226)
T ss_pred cceEEEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHH
Confidence 34588999977655 334443 333333334333321 1124577899999998652 223 357999999
Q ss_pred HHHHHhcCccccC----c-ccHHHHHHHHHHHhhh----cCCCC---CCeEEEEEecCCCC---------CChhHHHHHH
Q 016164 71 KILACMHGLEIGG----E-LNLAAGIQVAQLALKH----RQNKK---QQQRIIVFVGSPIK---------HEKKVLEMIG 129 (394)
Q Consensus 71 kilsaL~~l~~~G----~-~sL~~gL~iA~lALkh----r~~k~---~~~RIVlFvgSp~~---------~d~~~l~~~a 129 (394)
++++.|++|+..| + +++..||..|+..+.. |++.. ..+..|++..||-. ........++
T Consensus 91 ~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~~~~~~~~~~~~d~la 170 (226)
T PF11265_consen 91 KFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPVNECPQYSGKTCDQLA 170 (226)
T ss_pred HHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccccCCCcccCCCHHHHH
Confidence 9999999998754 2 4499999999988863 32211 23555666666652 1234678899
Q ss_pred HHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCC
Q 016164 130 RKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND 166 (394)
Q Consensus 130 kkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~ 166 (394)
..+.+.||.++||+= ....+|+.|.++.+++.
T Consensus 171 ~~~~~~~I~LSiisP-----rklP~l~~Lfeka~~~~ 202 (226)
T PF11265_consen 171 VLISERNISLSIISP-----RKLPSLRSLFEKAKGNP 202 (226)
T ss_pred HHHHhcCceEEEEcC-----ccCHHHHHHHHhcCCCc
Confidence 999999999999985 23468999999887644
No 64
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.18 E-value=0.0059 Score=60.87 Aligned_cols=149 Identities=23% Similarity=0.335 Sum_probs=114.4
Q ss_pred cceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcC-c
Q 016164 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHG-L 79 (394)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~D~~kilsaL~~-l 79 (394)
....++++|.|.||.-.. .+....++...+ +..++...+.++++.+ ...++.+++ .+...+..++.. +
T Consensus 37 ~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 107 (399)
T COG2304 37 PANLTLAIDTSGSMTGAL-LELAKSAAIELV-------NGLNPGDLLSIVTFAG-SADVLIPPTGATNKESITAAIDQSL 107 (399)
T ss_pred CcceEEEeccCCCccchh-HHHHHHHHHHHh-------cccCCCCceEEEEecC-CcceecCcccccCHHHHHHHHhhhh
Confidence 456789999999998776 555554444443 2588999999999999 679998888 899999999998 7
Q ss_pred cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC---ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHH
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH---EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 156 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~---d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~ 156 (394)
.+.|.+.+..++..+..-+.+-..+-...++.+..++..+. |...+...+++.-+.+|.++++|||... |.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~--n~~~~~ 185 (399)
T COG2304 108 QAGGATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDV--NEDELT 185 (399)
T ss_pred ccccccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEeccccc--chhhhh
Confidence 89999999999999965554422455666767666766543 7778888888888889999999999985 455666
Q ss_pred HHHHHh
Q 016164 157 ALLAAV 162 (394)
Q Consensus 157 ~~~~~v 162 (394)
.+....
T Consensus 186 ~~~~~~ 191 (399)
T COG2304 186 GIAAAA 191 (399)
T ss_pred hhhhcc
Confidence 555443
No 65
>PTZ00395 Sec24-related protein; Provisional
Probab=97.08 E-value=0.0039 Score=72.17 Aligned_cols=135 Identities=11% Similarity=0.082 Sum_probs=90.4
Q ss_pred ceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc------------------------c
Q 016164 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG------------------------V 59 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~------------------------a 59 (394)
=+.+||||+|......=+. .+..++++..+... ..|..+||||||-... +
T Consensus 953 P~YvFLIDVS~~AVkSGLl----~tacesIK~sLDsL--~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qP 1026 (1560)
T PTZ00395 953 PYFVFVVECSYNAIYNNIT----YTILEGIRYAVQNV--KCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNH 1026 (1560)
T ss_pred CEEEEEEECCHHHHhhChH----HHHHHHHHHHHhcC--CCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCc
Confidence 3789999999886655444 34455555555543 2578999999986421 0
Q ss_pred ------------------EEEECCCCCHHHHHHHhcCc------cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEec
Q 016164 60 ------------------RVLVTPTSDLGKILACMHGL------EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVG 115 (394)
Q Consensus 60 ------------------~vLvtlT~D~~kilsaL~~l------~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvg 115 (394)
.+++.|...+..|...|+.| ....+..|+.||+.|..+|+++. ..-||++|..
T Consensus 1027 QMLVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~G---GGGKIiVF~S 1103 (1560)
T PTZ00395 1027 QVIVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERN---GLGSICMFYT 1103 (1560)
T ss_pred eEEeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcC---CCceEEEEEc
Confidence 13334444445555555555 12346889999999999999852 3567888876
Q ss_pred CCCCCChh--------------------HHHHHHHHHHhCCceEEEEEeCCC
Q 016164 116 SPIKHEKK--------------------VLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 116 Sp~~~d~~--------------------~l~~~akkLKknnI~VdiI~fG~e 147 (394)
+.-+..++ --.+++..+.+.+|.||+.-|+..
T Consensus 1104 SLPniGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsq 1155 (1560)
T PTZ00395 1104 TTPNCGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSN 1155 (1560)
T ss_pred CCCCCCCCcccccccccccccccccchHHHHHHHHHHHhcCCceEEEEccCc
Confidence 55432221 224689999999999999999864
No 66
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=97.02 E-value=0.0094 Score=58.95 Aligned_cols=170 Identities=21% Similarity=0.186 Sum_probs=105.5
Q ss_pred eEEEEEeCCh---hh---hCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEEC--------------
Q 016164 5 ATLICIDNSE---WM---RNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVT-------------- 64 (394)
Q Consensus 5 a~vIvIDnSe---sM---rngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvt-------------- 64 (394)
-++++||.+. .| ..++. +. --..+|+-.|+++++-.|-.|+|.||.......+-|.|
T Consensus 25 lL~vlId~~p~~Wg~~as~~~~~-ti--~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 25 LLVVLIDANPCSWGMLASAENWE-TI--SKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred eEEEEEecCcchhhhhhhhcCce-eH--HHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 4678899887 23 34454 43 34778999999999999999999999986555555554
Q ss_pred CC----CCH-------HHHHHHhcCc----cc--cC-cccHHHHHHHHHHHhhhcCCC-----CCCeEEEEEecCCCCC-
Q 016164 65 PT----SDL-------GKILACMHGL----EI--GG-ELNLAAGIQVAQLALKHRQNK-----KQQQRIIVFVGSPIKH- 120 (394)
Q Consensus 65 lT----~D~-------~kilsaL~~l----~~--~G-~~sL~~gL~iA~lALkhr~~k-----~~~~RIVlFvgSp~~~- 120 (394)
|| .++ ..|.+-|..+ .. .| .+-+.-++.-|+- .-||-++ .-+.||+||..++...
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~-yi~~~~ke~~~~~lkSRilV~t~t~d~~~ 180 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALG-YINRLHKEEASEKLKSRILVFTLTRDRAL 180 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccc-hHhhhhhhhhhhhhhceEEEEEechHHHh
Confidence 33 111 1223333322 11 12 2333333333322 1222222 3489999998877654
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhhhcC
Q 016164 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLST 187 (394)
Q Consensus 121 d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l~ss 187 (394)
.-..+...+--+.|.||+||++.+|.... +|++-++.++ | -|.+|+.-+.+ -..|+..
T Consensus 181 qyi~~MNciFaAqKq~I~Idv~~l~~~s~----~LqQa~D~TG---G-~YL~v~~~~gL-LqyLlt~ 238 (314)
T KOG2487|consen 181 QYIPYMNCIFAAQKQNIPIDVVSLGGDSG----FLQQACDITG---G-DYLHVEKPDGL-LQYLLTL 238 (314)
T ss_pred hhhhHHHHHHHHHhcCceeEEEEecCCch----HHHHHHhhcC---C-eeEecCCcchH-HHHHHHH
Confidence 23345677778889999999999998863 9999998774 3 45666643443 3455443
No 67
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=96.95 E-value=0.059 Score=56.40 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=107.3
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------------------- 58 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~-------------------------- 58 (394)
.+++++|+|.||.+ -++..+.....+..+.-.-....++|+=+|-+|-
T Consensus 101 DLYyLMDlS~SM~d------dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~c~p~ 174 (423)
T smart00187 101 DLYYLMDLSYSMKD------DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLTCEPP 174 (423)
T ss_pred ceEEEEeCCccHHH------HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHhcCCCcCCCCCcCCC
Confidence 37899999999985 5677778888888887778888899998877761
Q ss_pred --cEEEECCCCCHHHHHHHhcCccccCcccH----HHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCC------------
Q 016164 59 --VRVLVTPTSDLGKILACMHGLEIGGELNL----AAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIK------------ 119 (394)
Q Consensus 59 --a~vLvtlT~D~~kilsaL~~l~~~G~~sL----~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~------------ 119 (394)
.+=+.+||.|..++-..+.+..+.|+.+. ..||..|..--++..-+....|||||+ +++.-
T Consensus 175 f~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaGIv~ 254 (423)
T smart00187 175 YGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGDGKLAGIVQ 254 (423)
T ss_pred cceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCCccccCCcceeeEec
Confidence 22347899999999999999988876552 334433331113322234567888876 44331
Q ss_pred -------------------CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCC
Q 016164 120 -------------------HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (394)
Q Consensus 120 -------------------~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~ 177 (394)
-|=-.+-.++++|+++||.+-+ ..-.. ...+.+.|.+.+. +|.+.++..+.
T Consensus 255 PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~~IF-AVT~~---~~~~Y~~Ls~lip---gs~vg~Ls~DS 324 (423)
T smart00187 255 PNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPIF-AVTKK---QVSLYKELSALIP---GSSVGVLSEDS 324 (423)
T ss_pred CCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCceEEE-EEccc---chhHHHHHHHhcC---cceeeecccCc
Confidence 0223788999999999996532 23222 2456777776663 45565655543
No 68
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.18 E-value=0.083 Score=55.47 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=92.4
Q ss_pred cceEEEEEeCChhhh-CCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc
Q 016164 3 LEATLICIDNSEWMR-NGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI 81 (394)
Q Consensus 3 lEa~vIvIDnSesMr-ngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~ 81 (394)
+-||++.||+|-||. .|-|.|-.-.| -|+-.+|+. +-|...|-||+|....-+|- .+.|..+.+
T Consensus 463 ~aAvallvDtS~SM~~eGRw~PmKQtA--LALhHLv~T---rfrGD~l~~i~Fgr~A~~v~----------v~eLt~l~~ 527 (652)
T COG4867 463 QAAVALLVDTSFSMVMEGRWLPMKQTA--LALHHLVCT---RFRGDALQIIAFGRYARTVT----------AAELTGLAG 527 (652)
T ss_pred ccceeeeeeccHHHHHhccCCchHHHH--HHHHHHHHh---cCCCcceEEEeccchhcccC----------HHHHhcCCC
Confidence 457999999999996 67666654322 244455554 56888999999998753331 223344443
Q ss_pred cC--cccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCC----------------CChhHHHHHH---HHHHhCCceEE
Q 016164 82 GG--ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK----------------HEKKVLEMIG---RKLKKNSVALD 140 (394)
Q Consensus 82 ~G--~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~----------------~d~~~l~~~a---kkLKknnI~Vd 140 (394)
-+ .+++.-||.+|...||.- ++ -.+.||++.++.-+ .||..|.++. .++.+.|+.|.
T Consensus 528 v~eqgTNlhhaL~LA~r~l~Rh-~~-~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~d~~~r~G~q~t 605 (652)
T COG4867 528 VYEQGTNLHHALALAGRHLRRH-AG-AQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGFDDMARLGAQVT 605 (652)
T ss_pred ccccccchHHHHHHHHHHHHhC-cc-cCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHHHHHHhccceee
Confidence 23 589999999999999852 33 44445555554332 2455565553 46788999999
Q ss_pred EEEeCCCCCCcHHHHHHHHHHhc
Q 016164 141 IVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 141 iI~fG~e~~~n~~~l~~~~~~vn 163 (394)
+.-+|..- -|..|++.|.
T Consensus 606 ~FrLg~Dp-----gL~~Fv~qva 623 (652)
T COG4867 606 IFRLGSDP-----GLARFIDQVA 623 (652)
T ss_pred EEeecCCH-----hHHHHHHHHH
Confidence 99999876 4677776664
No 69
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=96.16 E-value=0.29 Score=48.04 Aligned_cols=148 Identities=12% Similarity=0.143 Sum_probs=97.5
Q ss_pred eEEEEEeCChhhhCC------CC----CCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccE--EEECCC-C----
Q 016164 5 ATLICIDNSEWMRNG------DY----APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR--VLVTPT-S---- 67 (394)
Q Consensus 5 a~vIvIDnSesMrng------D~----~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~--vLvtlT-~---- 67 (394)
.+++.||.+.|-.+. -| .||-++.+..++-.++..|-+. ..+-+..|+++-.. .+...- +
T Consensus 33 nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D---~~ip~~GFGa~~~~~~~v~~~f~~~~~~ 109 (254)
T cd01459 33 NLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSD---KLIPAFGFGAIVTKDQSVFSFFPGYSES 109 (254)
T ss_pred eEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCC---CceeeEeecccCCCCCccccccCCCCCC
Confidence 578999999874322 12 4788888888888888876544 56777777764221 111110 1
Q ss_pred ----CHHHHHH----HhcCccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceE
Q 016164 68 ----DLGKILA----CMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVAL 139 (394)
Q Consensus 68 ----D~~kils----aL~~l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~V 139 (394)
-...++. ++.++++.|.++|.--|+.|...-++......-..+++++++.++ |.....+++.++.+.-+.|
T Consensus 110 p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~-D~~~t~~aIv~AS~~PlSI 188 (254)
T cd01459 110 PECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEIT-DMNETIKAIVEASKYPLSI 188 (254)
T ss_pred CcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCcc-cHHHHHHHHHHHhcCCeEE
Confidence 1244443 456788999999998888886655543222222334444466654 5777788888889999999
Q ss_pred EEEEeCCCCCCcHHHHHHHH
Q 016164 140 DIVNFGEDDEGNTEKLEALL 159 (394)
Q Consensus 140 diI~fG~e~~~n~~~l~~~~ 159 (394)
-+||+|...+ ..|+.|-
T Consensus 189 iiVGVGd~~F---~~M~~LD 205 (254)
T cd01459 189 VIVGVGDGPF---DAMERLD 205 (254)
T ss_pred EEEEeCCCCh---HHHHHhc
Confidence 9999998876 5666663
No 70
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=96.11 E-value=0.15 Score=48.75 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=100.4
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHH------HHHHHHhccCCcCCeE--EEEEecCC-ccEEEECCC--C---CHH
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAA------NLICGAKTQLNPENTV--GVMTMAGK-GVRVLVTPT--S---DLG 70 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av------~~fv~~k~~~NPes~V--GLVtmag~-~a~vLvtlT--~---D~~ 70 (394)
+++|+||+|.||-..+| ..|.+-. ..++...+ ..|..+| .++-.+|. ...++++-| . |..
T Consensus 5 aLvLavDvS~SVD~~E~-----~lQ~~G~A~Al~dp~V~~Ai~-~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~ 78 (205)
T PF06707_consen 5 ALVLAVDVSGSVDADEY-----RLQREGYAAALRDPEVIAAIL-SGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAE 78 (205)
T ss_pred eeeeeeeccCCCCHHHH-----HHHHHHHHHHHCCHHHHHHHh-cCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHH
Confidence 68999999999976655 3343321 12333322 3454555 55666763 346777655 2 444
Q ss_pred HHHHHhcCc--cccCcccHHHHHHHHHHHhhhcCCCC-CCeEEEEEecCCCCCChh-HHH-HHHHHHHhCCceEEEEEeC
Q 016164 71 KILACMHGL--EIGGELNLAAGIQVAQLALKHRQNKK-QQQRIIVFVGSPIKHEKK-VLE-MIGRKLKKNSVALDIVNFG 145 (394)
Q Consensus 71 kilsaL~~l--~~~G~~sL~~gL~iA~lALkhr~~k~-~~~RIVlFvgSp~~~d~~-~l~-~~akkLKknnI~VdiI~fG 145 (394)
.+-..|... ...+.|+++.||..|...|... +. ..+|+|= |.++...+.+ ... .+-..+...||.|.-+.++
T Consensus 79 a~A~~l~~~~r~~~~~Taig~Al~~a~~ll~~~--~~~~~RrVID-vSGDG~~N~G~~p~~~ard~~~~~GitINgL~I~ 155 (205)
T PF06707_consen 79 AFAARLRAAPRRFGGRTAIGSALDFAAALLAQN--PFECWRRVID-VSGDGPNNQGPRPVTSARDAAVAAGITINGLAIL 155 (205)
T ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhC--CCCCceEEEE-ECCCCCCCCCCCccHHHHHHHHHCCeEEeeeEec
Confidence 455556554 2345599999999999999874 44 4445444 4444433333 444 5666778889999999999
Q ss_pred CCCCCcH-HHHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 146 EDDEGNT-EKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 146 ~e~~~n~-~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
....... .+-..|-+.|=++.+++++++..- .-+.+.+
T Consensus 156 ~~~~~~~~~L~~yy~~~VIgGpgAFV~~a~~~-~df~~Ai 194 (205)
T PF06707_consen 156 DDDPFGGADLDAYYRRCVIGGPGAFVETARGF-EDFAEAI 194 (205)
T ss_pred CCCCCccccHHHHHhhhcccCCCceEEEcCCH-HHHHHHH
Confidence 8772111 344445555555555555555432 2255544
No 71
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.16 Score=57.05 Aligned_cols=170 Identities=19% Similarity=0.231 Sum_probs=104.0
Q ss_pred eEEEEEeCChhh-hCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------cEEEE
Q 016164 5 ATLICIDNSEWM-RNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG--------------------VRVLV 63 (394)
Q Consensus 5 a~vIvIDnSesM-rngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~--------------------a~vLv 63 (394)
+.|+.||+|-.- +|| -+.+..++++..+..+-..-|.-+||||+|-... -++.+
T Consensus 419 afvFmIDVSy~Ai~~G-----~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfv 493 (1007)
T KOG1984|consen 419 AFVFMIDVSYNAISNG-----AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFV 493 (1007)
T ss_pred eEEEEEEeehhhhhcc-----hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeeccccccc
Confidence 678899998543 233 2347778888888887778888999999997531 01122
Q ss_pred CCCC-------CHHHHH-HHhcCc------cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC-Ch------
Q 016164 64 TPTS-------DLGKIL-ACMHGL------EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-EK------ 122 (394)
Q Consensus 64 tlT~-------D~~kil-saL~~l------~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~-d~------ 122 (394)
++-+ +-.+++ ..|+.| +-.-++-|+.+|+.|.+|||.. + ..+++||..+.-+. .+
T Consensus 494 Pf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~--~--gGKl~vF~s~Lpt~g~g~kl~~r 569 (1007)
T KOG1984|consen 494 PFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAA--D--GGKLFVFHSVLPTAGAGGKLSNR 569 (1007)
T ss_pred ccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhcc--C--CceEEEEecccccccCccccccc
Confidence 2221 112233 333433 1124789999999999999984 2 66778887654432 11
Q ss_pred -------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE---EEEcCCCCchh
Q 016164 123 -------------------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH---LVHVPPGPNAL 180 (394)
Q Consensus 123 -------------------~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~---~v~vp~g~~lL 180 (394)
+...++|+.+.+.+|.||+--|-..- .-.+-+-.++..+. +.-.| |.....++.++
T Consensus 570 ~D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ay-vDvAtlg~v~~~Tg-G~vy~Y~~F~a~~D~~rl~ 647 (1007)
T KOG1984|consen 570 DDRRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAY-VDVATLGVVPALTG-GQVYKYYPFQALTDGPRLL 647 (1007)
T ss_pred chhhhhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccce-eeeeeecccccccC-ceeEEecchhhcccHHHHH
Confidence 12458999999999999998885433 22334444443332 22122 22333345777
Q ss_pred hhhhh
Q 016164 181 SDVLL 185 (394)
Q Consensus 181 sD~l~ 185 (394)
.|...
T Consensus 648 nDL~~ 652 (1007)
T KOG1984|consen 648 NDLVR 652 (1007)
T ss_pred HHHHH
Confidence 88774
No 72
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=95.06 E-value=0.0056 Score=36.86 Aligned_cols=16 Identities=31% Similarity=0.713 Sum_probs=11.1
Q ss_pred CChHHHHHHHHhcccc
Q 016164 321 EDDPELALALQLSMQD 336 (394)
Q Consensus 321 ~e~~~ia~A~~ms~~~ 336 (394)
+||++|++||+|||++
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 4677777777777764
No 73
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=95.01 E-value=0.37 Score=46.97 Aligned_cols=174 Identities=15% Similarity=0.104 Sum_probs=104.5
Q ss_pred EEEEEeCChh-hhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHH-------------
Q 016164 6 TLICIDNSEW-MRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGK------------- 71 (394)
Q Consensus 6 ~vIvIDnSes-MrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~k------------- 71 (394)
++++||.-.- ..--+-+=+|.. ....+-.|.++++.-|-.|+|.||.--..+.+.|-|-+....|
T Consensus 23 L~viid~~p~~W~~~~ek~~~~k-vl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~y 101 (296)
T COG5242 23 LFVIIDLEPENWELTTEKGSRDK-VLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMY 101 (296)
T ss_pred EEEEEecChhhcccccccccHHH-HHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhh
Confidence 4556665321 122222333433 3466778999999999999999998766666776543322111
Q ss_pred ---------HHHHhcCc--ccc---CcccHHHHHHHHHHHhhhcCCC-CCCeEEEEEecCCCCC-Chh-HHHHHHHHHHh
Q 016164 72 ---------ILACMHGL--EIG---GELNLAAGIQVAQLALKHRQNK-KQQQRIIVFVGSPIKH-EKK-VLEMIGRKLKK 134 (394)
Q Consensus 72 ---------ilsaL~~l--~~~---G~~sL~~gL~iA~lALkhr~~k-~~~~RIVlFvgSp~~~-d~~-~l~~~akkLKk 134 (394)
.++.|.++ .++ -...+.-|+..++....|++++ .-+.||+||..|--.. +.- -..+-+--+.|
T Consensus 102 rrfr~vde~~i~eiyrl~e~~~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~d~~~qYip~mnCiF~Aqk 181 (296)
T COG5242 102 RRFRNVDETDITEIYRLIEHPHKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGRDRKDQYIPYMNCIFAAQK 181 (296)
T ss_pred hhhcccchHHHHHHHHHHhCcccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCchhhhhhchhhhheeehhh
Confidence 23333332 122 2467777788887777888765 3678999998744211 110 11233445578
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhhhcCcc
Q 016164 135 NSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPI 189 (394)
Q Consensus 135 nnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l~sspi 189 (394)
.||+|++++++... ..|++-+++++ .-|.+|..-.. |-..|+++-.
T Consensus 182 ~~ipI~v~~i~g~s----~fl~Q~~daTg----G~Yl~ve~~eG-llqyL~~~lf 227 (296)
T COG5242 182 FGIPISVFSIFGNS----KFLLQCCDATG----GDYLTVEDTEG-LLQYLLSLLF 227 (296)
T ss_pred cCCceEEEEecCcc----HHHHHHhhccC----CeeEeecCchh-HHHHHHHHhc
Confidence 89999999998654 57888887774 34666655333 4456655533
No 74
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=94.59 E-value=0.01 Score=35.76 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHhcHHH
Q 016164 222 NLDPELALALRVSMEE 237 (394)
Q Consensus 222 ~~DPELa~Alr~SlEE 237 (394)
++|++|+.||++||+|
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 3589999999999997
No 75
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=94.49 E-value=0.025 Score=37.07 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHhcHHHHHHH
Q 016164 222 NLDPELALALRVSMEEERAR 241 (394)
Q Consensus 222 ~~DPELa~Alr~SlEEe~~r 241 (394)
+.|++|++||++||+|.+.+
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 1 DEDEDLQLALELSLQEAEES 20 (26)
T ss_pred ChHHHHHHHHHHhHHHhhhc
Confidence 36899999999999998765
No 76
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=94.34 E-value=0.86 Score=49.67 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=95.7
Q ss_pred CCcceEEEEEeCChhhhCCCCC-CcHHHHHHHHHHHHHHHhccCC-cCCeEEEEEecCC-------------ccEEEEC-
Q 016164 1 MVLEATLICIDNSEWMRNGDYA-PSRFQAQTEAANLICGAKTQLN-PENTVGVMTMAGK-------------GVRVLVT- 64 (394)
Q Consensus 1 m~lEa~vIvIDnSesMrngD~~-PsRl~Aq~~Av~~fv~~k~~~N-Pes~VGLVtmag~-------------~a~vLvt- 64 (394)
|+-|++++++|++.+|.+.+=. -+-|+.++.++..++..|+-.+ --.-||+|.+.-. +..|+-+
T Consensus 2 s~se~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~ 81 (669)
T KOG2326|consen 2 SSSESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPV 81 (669)
T ss_pred CCCcceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecc
Confidence 4568888888999999999811 3589999999999999987666 5557899987621 1245544
Q ss_pred CCCCHHHHHHHhcCc-cccC-cccHHHHHHHHHH-HhhhcC-CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEE
Q 016164 65 PTSDLGKILACMHGL-EIGG-ELNLAAGIQVAQL-ALKHRQ-NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALD 140 (394)
Q Consensus 65 lT~D~~kilsaL~~l-~~~G-~~sL~~gL~iA~l-ALkhr~-~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~Vd 140 (394)
.|.....++..+.+. +.+- ..+|..+|-+.+- ...|.. ++...+|+|+..-..++.--++++ +++.|++.+|.+-
T Consensus 82 ~tpaf~~l~k~~~~~~qqns~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~~dfsd~~~-ive~l~~~didL~ 160 (669)
T KOG2326|consen 82 TTPAFIGLIKRLKQYCQQNSHQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLFTDFSDDLF-IVEDLTDEDIDLL 160 (669)
T ss_pred cchhhHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhccchhhceEEEEeecccccchhhHH-HHHHHhhcCccee
Confidence 344556666666643 3222 3556666666543 334432 233445555554444444455566 9999999999999
Q ss_pred EEEeCC
Q 016164 141 IVNFGE 146 (394)
Q Consensus 141 iI~fG~ 146 (394)
++|+-.
T Consensus 161 ~~gldf 166 (669)
T KOG2326|consen 161 TEGLDF 166 (669)
T ss_pred EeeccC
Confidence 998754
No 77
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=1.4 Score=48.91 Aligned_cols=144 Identities=18% Similarity=0.241 Sum_probs=93.2
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE----------------CCC---
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV----------------TPT--- 66 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLv----------------tlT--- 66 (394)
.++|||.= .-+.+|++.|+++..++.- .+|..-|||||++.. +.|.- .+|
T Consensus 124 f~fVvDtc-------~~eeeL~~LkssL~~~l~l---LP~~alvGlItfg~~-v~v~el~~~~~sk~~VF~G~ke~s~~q 192 (745)
T KOG1986|consen 124 FVFVVDTC-------MDEEELQALKSSLKQSLSL---LPENALVGLITFGTM-VQVHELGFEECSKSYVFSGNKEYSAKQ 192 (745)
T ss_pred EEEEEeec-------cChHHHHHHHHHHHHHHhh---CCCcceEEEEEecce-EEEEEcCCCcccceeEEeccccccHHH
Confidence 36677754 2468999999999888874 777788999999753 23321 011
Q ss_pred --------C----------CHHHHH-----------HHhcCccc------cC---cccHHHHHHHHHHHhhhcCCCCCCe
Q 016164 67 --------S----------DLGKIL-----------ACMHGLEI------GG---ELNLAAGIQVAQLALKHRQNKKQQQ 108 (394)
Q Consensus 67 --------~----------D~~kil-----------saL~~l~~------~G---~~sL~~gL~iA~lALkhr~~k~~~~ 108 (394)
+ ...+++ .-|..+++ .| --..+.||.+|...|... -++...
T Consensus 193 ~~~~L~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c-~p~~g~ 271 (745)
T KOG1986|consen 193 LLDLLGLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGC-FPNTGA 271 (745)
T ss_pred HHHHhcCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhccc-CCCCcc
Confidence 1 111111 11112221 22 145788899998888654 578999
Q ss_pred EEEEEecCCCCCChh------------------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 109 RIIVFVGSPIKHEKK------------------------------VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 109 RIVlFvgSp~~~d~~------------------------------~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
|||+|+|+|.+..++ --.++|+++..+|..|||..=+-.. --...|+.+
T Consensus 272 rIv~f~gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~ghvlDifa~~lDQ-vGi~EMk~l 350 (745)
T KOG1986|consen 272 RIVLFAGGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQGHVLDIFAAALDQ-VGILEMKPL 350 (745)
T ss_pred eEEEeccCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCCceEeeeeeeccc-cchHHHHHH
Confidence 999999998652221 2257899999999999998776654 345566677
Q ss_pred HHHh
Q 016164 159 LAAV 162 (394)
Q Consensus 159 ~~~v 162 (394)
++.+
T Consensus 351 ~~~T 354 (745)
T KOG1986|consen 351 VEST 354 (745)
T ss_pred hhcC
Confidence 6544
No 78
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.20 E-value=0.83 Score=53.20 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=100.0
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE---------CCCCCHHHHHHH
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV---------TPTSDLGKILAC 75 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLv---------tlT~D~~kilsa 75 (394)
.++|++|.|.|| .+.||..++..++.++.- .-+..-|-|+++.... .-++ --..+...++..
T Consensus 227 diviLlD~SgSm-----~g~~~~lak~tv~~iLdt---Ls~~Dfvni~tf~~~~-~~v~pc~~~~lvqAt~~nk~~~~~~ 297 (1104)
T KOG2353|consen 227 DIVILLDVSGSM-----SGLRLDLAKQTVNEILDT---LSDNDFVNILTFNSEV-NPVSPCFNGTLVQATMRNKKVFKEA 297 (1104)
T ss_pred ceEEEEeccccc-----cchhhHHHHHHHHHHHHh---cccCCeEEEEeecccc-CcccccccCceeecchHHHHHHHHH
Confidence 589999999998 568999999999999997 4445677788887653 2222 223577888999
Q ss_pred hcCccccCcccHHHHHHHHHHHhhhcC----C---CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 76 MHGLEIGGELNLAAGIQVAQLALKHRQ----N---KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 76 L~~l~~~G~~sL~~gL~iA~lALkhr~----~---k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
+..+++.|.+++..|+..|...|..-. + +..-+-|++|.++..+ +..++++.-..= ...|||.+..+|.+.
T Consensus 298 i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~-~~~~If~~yn~~-~~~Vrvftflig~~~ 375 (1104)
T KOG2353|consen 298 IETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDE-NAKEIFEKYNWP-DKKVRVFTFLIGDEV 375 (1104)
T ss_pred HhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcc-cHHHHHHhhccC-CCceEEEEEEecccc
Confidence 999999999999999999977775211 1 1255677777655433 244444332211 578999999999998
Q ss_pred CCcHHHHHH
Q 016164 149 EGNTEKLEA 157 (394)
Q Consensus 149 ~~n~~~l~~ 157 (394)
.+...++-
T Consensus 376 -~~~~~~~w 383 (1104)
T KOG2353|consen 376 -YDLDEIQW 383 (1104)
T ss_pred -cccccchh
Confidence 66555443
No 79
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.12 E-value=0.76 Score=50.15 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCCC-----C-----hhHHHHHHHHHHhC-CceEEEEEeCCCC
Q 016164 88 AAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKH-----E-----KKVLEMIGRKLKKN-SVALDIVNFGEDD 148 (394)
Q Consensus 88 ~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~~-----d-----~~~l~~~akkLKkn-nI~VdiI~fG~e~ 148 (394)
+.||..|+.-|.+|+ -.++.+|||+ |.|... + ..+|-.+++...+. +|.+--||+|..+
T Consensus 499 GeAl~wa~~rL~~R~--e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~Dv 569 (600)
T TIGR01651 499 GEALMWAHQRLIARP--EQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHDV 569 (600)
T ss_pred hHHHHHHHHHHhcCc--ccceEEEEEeCCCcCCccccccCchhHHHHHHHHHHHHHhccCCceEEEeeccccH
Confidence 679999999998875 2555556666 666632 1 23577788888885 8999999998775
No 80
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=92.96 E-value=2.7 Score=44.30 Aligned_cols=167 Identities=14% Similarity=0.204 Sum_probs=97.1
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCC---------------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGK--------------------------- 57 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~--------------------------- 57 (394)
.+++++|.|.||++ -++-.+.....++.+.-+.-...++|+=+|.++
T Consensus 104 DLYyLmDlS~Sm~d------dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~c~~~ 177 (426)
T PF00362_consen 104 DLYYLMDLSYSMKD------DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPNCQPP 177 (426)
T ss_dssp EEEEEEE-SGGGHH------HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS--B--
T ss_pred eEEEEeechhhhhh------hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhhcCcccccCCCCCCC
Confidence 36899999999984 233334444445555555667789999998876
Q ss_pred -ccEEEECCCCCHHHHHHHhcCccccCcccH----HHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCC------------
Q 016164 58 -GVRVLVTPTSDLGKILACMHGLEIGGELNL----AAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIK------------ 119 (394)
Q Consensus 58 -~a~vLvtlT~D~~kilsaL~~l~~~G~~sL----~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~------------ 119 (394)
+.+-..+||.|..++.+.+++..+.|+.+. ..||..|..-=++..=+....|||||+ +++.-
T Consensus 178 ~~f~~~l~Lt~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~~fH~agDg~l~gi~~ 257 (426)
T PF00362_consen 178 FSFRHVLSLTDDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDAGFHFAGDGKLAGIVK 257 (426)
T ss_dssp -SEEEEEEEES-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS-B--TTGGGGGT--S
T ss_pred eeeEEeecccchHHHHHHhhhhccccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCCccccccccccceeee
Confidence 234456788999999999999877764332 233333322222221234577777775 33320
Q ss_pred -----C--------------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchh
Q 016164 120 -----H--------------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 180 (394)
Q Consensus 120 -----~--------------d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lL 180 (394)
+ |=-.+-.+.++|.++||.+- ...-.. -....+.|.+.+ .++.+..+..+...+
T Consensus 258 pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~~I-FAVt~~---~~~~Y~~L~~~i---~~s~vg~L~~dSsNI 330 (426)
T PF00362_consen 258 PNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNINPI-FAVTKD---VYSIYEELSNLI---PGSSVGELSSDSSNI 330 (426)
T ss_dssp ---SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEEEE-EEEEGG---GHHHHHHHHHHS---TTEEEEEESTTSHTH
T ss_pred cCCCceEECCCCcccccccccCCCHHHHHHHHHHcCCEEE-EEEchh---hhhHHHHHhhcC---CCceecccccCchhH
Confidence 1 22256789999999999543 233322 356888888877 577787877765334
Q ss_pred hhhh
Q 016164 181 SDVL 184 (394)
Q Consensus 181 sD~l 184 (394)
-++|
T Consensus 331 v~LI 334 (426)
T PF00362_consen 331 VQLI 334 (426)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 81
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=92.88 E-value=1.9 Score=38.98 Aligned_cols=120 Identities=18% Similarity=0.157 Sum_probs=78.2
Q ss_pred CCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCcc---EE--EECCCCC--------HHHHH----HHhcCccccCc
Q 016164 22 APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGV---RV--LVTPTSD--------LGKIL----ACMHGLEIGGE 84 (394)
Q Consensus 22 ~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a---~v--LvtlT~D--------~~kil----saL~~l~~~G~ 84 (394)
.||.++.+..++-.++..|-..+.. -+..|+++.+ .+ .-+++.+ ...++ .++.++++.|.
T Consensus 9 ~~N~Y~~ai~~vg~il~~Yd~dk~~---p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GP 85 (146)
T PF07002_consen 9 QPNPYQQAIRAVGEILQDYDSDKMI---PAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGP 85 (146)
T ss_pred CCCHHHHHHHHHHHHHHhhccCCcc---ceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCC
Confidence 6899999999999999998665544 4555666533 11 1334433 33444 55667899999
Q ss_pred ccHHHHHHHHHHHhh-hcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 016164 85 LNLAAGIQVAQLALK-HRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 145 (394)
Q Consensus 85 ~sL~~gL~iA~lALk-hr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG 145 (394)
++|.--|+.|...-+ ..++..+=...+|++++.++ |.+.-.+++-.+.+.-++|=+||+|
T Consensus 86 T~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~-D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 86 TNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQIT-DMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred ccHHHHHHHHHHHHhhhccCCceEEEEEEecccccc-cHHHHHHHHHHHccCCeEEEEEEeC
Confidence 999988888865554 22223333445566677765 4555556666666777777777776
No 82
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=92.88 E-value=2.4 Score=43.93 Aligned_cols=169 Identities=15% Similarity=0.199 Sum_probs=100.9
Q ss_pred ceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcC---cc
Q 016164 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHG---LE 80 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~---l~ 80 (394)
..++|++|.|.+|.-|+-..++|+.+..++-.+...-..+ ..+||+.++++.. ...++|......+...|.. +.
T Consensus 225 ~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~--gd~vg~~~~~~~~-~~~~~p~~G~~~l~~~l~~l~~~~ 301 (416)
T COG1721 225 RTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKN--GDRVGLLIFGGGG-PKWIPPSRGRRHLARILKALALLR 301 (416)
T ss_pred ceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhC--CCeeEEEEECCCc-ceeeCCCcchHHHHHHHHHhhccC
Confidence 3689999999999999999999999999888888776555 4589999998763 6778888777666555554 45
Q ss_pred ccCc-ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcH-------
Q 016164 81 IGGE-LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT------- 152 (394)
Q Consensus 81 ~~G~-~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~------- 152 (394)
+.+. ++....... ..+.. .-+..++++...........+..+...+.+. +.+-++.|.+....+.
T Consensus 302 ~~~~~~~~~~~~~~--~~~l~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~ 374 (416)
T COG1721 302 PAPEETDYIRRVSK--LDFLP----PRRPLVILITDLARHGVDELLLEVLDPLGER-PLVLIVDLRDPAGEAEALRALYA 374 (416)
T ss_pred CCCcchhHHHHhhh--hhccC----cccceEEEeehhhccccchhhhccccccCCC-ceEEEEEecCCccccHHHHHHHH
Confidence 5444 333322211 12111 1222334443333222333455666666665 7777888855321221
Q ss_pred ----HHHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 153 ----EKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 153 ----~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
.+.+++...+. .-+.+++.++.+.. +...+
T Consensus 375 ~~~~~~r~~~~~~l~-~~gv~~~~~~~~~~-~~~~~ 408 (416)
T COG1721 375 RKLLADRAALARRLR-RLGVLVIDVRTDED-APAAL 408 (416)
T ss_pred HHHHHHHHHHHHHHH-HcCCeEEecCcccc-hHHHH
Confidence 12222222222 24677888887753 44444
No 83
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=92.30 E-value=0.064 Score=35.16 Aligned_cols=19 Identities=42% Similarity=0.775 Sum_probs=14.3
Q ss_pred CChHHHHHHHHhccccCCC
Q 016164 321 EDDPELALALQLSMQDGTK 339 (394)
Q Consensus 321 ~e~~~ia~A~~ms~~~~~~ 339 (394)
+||++|++||+||+++.+.
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~ 19 (26)
T smart00726 1 DEDEDLQLALELSLQEAEE 19 (26)
T ss_pred ChHHHHHHHHHHhHHHhhh
Confidence 3678888888888886544
No 84
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=92.21 E-value=4.3 Score=39.31 Aligned_cols=136 Identities=22% Similarity=0.285 Sum_probs=74.3
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeE-EEEEecCCccE---EEE--CCCCCHHHHHHHhcC
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTV-GVMTMAGKGVR---VLV--TPTSDLGKILACMHG 78 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~V-GLVtmag~~a~---vLv--tlT~D~~kilsaL~~ 78 (394)
+|-|+||+|.||+. .|-.+ +..++-.|++..-..+--..| |+-|.+-++.. -+. --+..++++..-+|-
T Consensus 14 ~VtlLID~SGSMrg---r~~~v--A~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~ 88 (219)
T PF11775_consen 14 VVTLLIDCSGSMRG---RPIEV--AALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHI 88 (219)
T ss_pred EEEEEEeCCcCCCC---ChHHH--HHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHH
Confidence 46789999999997 33333 333344444444344433333 66555321111 111 012345555444443
Q ss_pred c---------------------cc-cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCC------CC----hhHH
Q 016164 79 L---------------------EI-GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIK------HE----KKVL 125 (394)
Q Consensus 79 l---------------------~~-~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~------~d----~~~l 125 (394)
+ .+ ..+.+ +.||..|..-|..|+ ..++-+|||+ |.|.. .+ ..+|
T Consensus 89 vyk~a~~~wrraR~~l~~m~~~~~~~eniD-GeAl~~a~~rL~~r~--e~rkiLiViSDG~P~d~st~~~n~~~~L~~HL 165 (219)
T PF11775_consen 89 VYKDADTPWRRARRNLGLMMREGLLKENID-GEALRWAAERLLARP--EQRKILIVISDGAPADDSTLSANDGDYLDAHL 165 (219)
T ss_pred HHHhcCChhhhHHHhHHHHhhccccccCCc-HHHHHHHHHHHHcCC--ccceEEEEEeCCCcCcccccccCChHHHHHHH
Confidence 2 11 11233 678888988887764 3555556666 66662 11 2466
Q ss_pred HHHHHHHHh-CCceEEEEEeCCCC
Q 016164 126 EMIGRKLKK-NSVALDIVNFGEDD 148 (394)
Q Consensus 126 ~~~akkLKk-nnI~VdiI~fG~e~ 148 (394)
..+++...+ .+|.+--||+|...
T Consensus 166 r~vi~~ie~~~~Vel~aiGIg~D~ 189 (219)
T PF11775_consen 166 RQVIAEIETRSDVELIAIGIGHDV 189 (219)
T ss_pred HHHHHHHhccCCcEEEEEEcCCCc
Confidence 777877765 47888888887665
No 85
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=90.09 E-value=5.5 Score=44.83 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=90.6
Q ss_pred eEEEEEeCChh-hhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE-ECCCCC--------------
Q 016164 5 ATLICIDNSEW-MRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL-VTPTSD-------------- 68 (394)
Q Consensus 5 a~vIvIDnSes-MrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vL-vtlT~D-------------- 68 (394)
..|+.||+|-. |.+|= +.+..+++..-+..+-+-.|..+|++|.+-.+. ..+ .+|.-|
T Consensus 278 ~yvFlIDVS~~a~~~g~-----~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl-~ffk~s~d~~~~~~~vsdld~pFl 351 (861)
T COG5028 278 VYVFLIDVSFEAIKNGL-----VKAAIRAILENLDQIPNFDPRTKIAIICFDSSL-HFFKLSPDLDEQMLIVSDLDEPFL 351 (861)
T ss_pred EEEEEEEeehHhhhcch-----HHHHHHHHHhhccCCCCCCCcceEEEEEEccee-eEEecCCCCccceeeecccccccc
Confidence 57899999954 44442 335555655555555566799999999997653 332 222221
Q ss_pred ------------HHHH-----HHHhcCcc---ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCC---------
Q 016164 69 ------------LGKI-----LACMHGLE---IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK--------- 119 (394)
Q Consensus 69 ------------~~ki-----lsaL~~l~---~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~--------- 119 (394)
.-++ +.....+- -.-+..++.||++|++.++. .+.+||+|+++.-+
T Consensus 352 Pf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~-----~GGkii~~~stlPn~G~Gkl~~r 426 (861)
T COG5028 352 PFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGG-----TGGKIIVFLSTLPNMGIGKLQLR 426 (861)
T ss_pred cCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhc-----cCceEEEEeecCCCccccccccc
Confidence 0011 11111121 12357899999999998765 56677888766221
Q ss_pred ---------CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 120 ---------HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 120 ---------~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
+..+--.+++..+-|-+|.||+--+.+.- --..-+-.++..+
T Consensus 427 ~d~e~~ll~c~d~fYk~~a~e~~k~gIsvd~Flt~~~y-idvaTls~l~~~T 477 (861)
T COG5028 427 EDKESSLLSCKDSFYKEFAIECSKVGISVDLFLTSEDY-IDVATLSHLCRYT 477 (861)
T ss_pred ccchhhhccccchHHHHHHHHHHHhcceEEEEeccccc-cchhhhcchhhcc
Confidence 22222357899999999999999997755 4455666776555
No 86
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=89.55 E-value=8.6 Score=41.82 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=74.3
Q ss_pred cceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcccc
Q 016164 3 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIG 82 (394)
Q Consensus 3 lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~ 82 (394)
++.++.|.|+|.||--. --...-++..++.+. ..|--.=.+|||... |++..=-..+...-+..+.+..-+
T Consensus 340 l~n~iav~DvSGSM~~~------pm~vaiaLgll~ae~--~~~pf~~~~ITFs~~-P~~~~i~g~~l~ekv~~~~~~~wg 410 (534)
T PF11443_consen 340 LENCIAVCDVSGSMSGP------PMDVAIALGLLIAEL--NKGPFKGRFITFSEN-PQLHKIKGDTLREKVRFIRRMDWG 410 (534)
T ss_pred ccceEEEEecCCccCcc------HHHHHHHHHHHHHHh--cccccCCeEEeecCC-ceEEEecCCCHHHHHHHHHhCCcc
Confidence 68999999999999877 234445677777776 333344578999887 665533333677777788888889
Q ss_pred CcccHHHHHHHHH-HHhhhcC-CCCCCeEEEEEecCCCC
Q 016164 83 GELNLAAGIQVAQ-LALKHRQ-NKKQQQRIIVFVGSPIK 119 (394)
Q Consensus 83 G~~sL~~gL~iA~-lALkhr~-~k~~~~RIVlFvgSp~~ 119 (394)
++|+|+....+-+ .|.++.- ...-.+||+||++=...
T Consensus 411 ~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD 449 (534)
T PF11443_consen 411 MNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFD 449 (534)
T ss_pred cCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEeccccc
Confidence 9999999987764 3444421 12346888888754443
No 87
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=86.66 E-value=2.7 Score=36.71 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=53.0
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc--cccC
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL--EIGG 83 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l--~~~G 83 (394)
++|+||+|.||.+.++. ||.+ .+..+++.+ ..+|-||.+ +....-...+.. ....+..+ .-+|
T Consensus 1 i~vaiDtSGSis~~~l~--~fl~---ev~~i~~~~-----~~~v~vi~~-D~~v~~~~~~~~----~~~~~~~~~~~GgG 65 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELR--RFLS---EVAGILRRF-----PAEVHVIQF-DAEVQDVQVFRS----LEDELRDIKLKGGG 65 (126)
T ss_pred CEEEEECCCCCCHHHHH--HHHH---HHHHHHHhC-----CCCEEEEEE-CCEeeeeeEEec----ccccccccccCCCC
Confidence 57999999999775543 4433 333445543 335777765 432333333333 11223333 4567
Q ss_pred cccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCC
Q 016164 84 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK 119 (394)
Q Consensus 84 ~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~ 119 (394)
+|+|.-.++-+. +++ ....-+|+|+++...
T Consensus 66 GTdf~pvf~~~~---~~~---~~~~~vi~fTDg~~~ 95 (126)
T PF09967_consen 66 GTDFRPVFEYLE---ENR---PRPSVVIYFTDGEGW 95 (126)
T ss_pred CCcchHHHHHHH---hcC---CCCCEEEEEeCCCCC
Confidence 899999888764 232 234556778876553
No 88
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=82.73 E-value=45 Score=31.77 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=45.5
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHh--CCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKK--NSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSD 182 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKk--nnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD 182 (394)
....+|+|+|..... ....+.+++++|++ .++.+.+||-|.....-.+.+++.+...+. ..++..+..-. -+.+
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~--~~~v~~~g~~~-~~~~ 259 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGL--QDRVTFVGHCS-DMPA 259 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCC--cceEEEcCCcc-cHHH
Confidence 345667777765443 56778899999988 567778887776541111233334443321 12333333322 3566
Q ss_pred hhhcCccc
Q 016164 183 VLLSTPIF 190 (394)
Q Consensus 183 ~l~sspi~ 190 (394)
.+..+.++
T Consensus 260 ~l~~ad~~ 267 (355)
T cd03819 260 AYALADIV 267 (355)
T ss_pred HHHhCCEE
Confidence 66655543
No 89
>PF10221 DUF2151: Cell cycle and development regulator; InterPro: IPR019355 This entry represents the cell cycle regulator Mat89b, which plays an evolutionarily conserved role as a crucial regulator of both cell cycle and development []. Mat89Bb is a PNG kinase substrate that is essential for S-M cycles of early Drosophila embryogenesis, Xenopus embryonic cell cycles and morphogenesis, and cell division in cultured mammalian cells.
Probab=82.08 E-value=14 Score=41.41 Aligned_cols=121 Identities=17% Similarity=0.266 Sum_probs=87.7
Q ss_pred eEEEEEeCChhhhC------------------CCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC
Q 016164 5 ATLICIDNSEWMRN------------------GDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT 66 (394)
Q Consensus 5 a~vIvIDnSesMrn------------------gD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT 66 (394)
-||||||-|.||.. .=+..|=|.|..+|+-++|+=-++.=|....=-++..+..+..|-+-+
T Consensus 7 KTVfVLDh~p~f~~ss~~~i~~d~~~~~~~~~~~i~KSLWTc~vEa~~EYcRIV~DlFP~~k~IrfivsD~~a~~lntW~ 86 (695)
T PF10221_consen 7 KTVFVLDHSPYFAESSNQPIDFDIVKKSRQQKAPISKSLWTCAVEASIEYCRIVWDLFPDGKLIRFIVSDTAAHILNTWS 86 (695)
T ss_pred cEEEEEcCCchhhhhccCcEEEeeecCCCCCcCcccchHHHHHHHHHHHHHHHHhhccCCCceEEEEEEccccccccCcC
Confidence 38999999999842 123457899999999999999999999888755566677777776643
Q ss_pred ---CCHHHHHHHhcCcccc-------CcccHHHHHHHHHHHhhhcC----------------CCCCCeEEEEEecCCCCC
Q 016164 67 ---SDLGKILACMHGLEIG-------GELNLAAGIQVAQLALKHRQ----------------NKKQQQRIIVFVGSPIKH 120 (394)
Q Consensus 67 ---~D~~kilsaL~~l~~~-------G~~sL~~gL~iA~lALkhr~----------------~k~~~~RIVlFvgSp~~~ 120 (394)
.+...++..|..+.+- .++++..||..|..+|-+.. ....+.|||+|+.-....
T Consensus 87 ~~~Qsl~~L~~~la~vG~P~~~~~~~~d~svi~GL~~AIEaL~e~td~Q~e~~~~~~~~~~~~~~N~GrIIciT~~k~d~ 166 (695)
T PF10221_consen 87 TSQQSLSHLMNALATVGPPPRSDPENSDYSVIHGLRMAIEALAEPTDSQKEQRASRVNEELKKVENRGRIICITSAKSDE 166 (695)
T ss_pred hhhccHHHHHHHHHhcCCCCCCCcccccchhHHHHHHHHHHHhcCCHHHHHHhhcccchhhhhccCCccEEEEEeecCcH
Confidence 4777788888877332 34589999999999986421 013678999997555544
Q ss_pred ChhHH
Q 016164 121 EKKVL 125 (394)
Q Consensus 121 d~~~l 125 (394)
+-..|
T Consensus 167 ~m~~L 171 (695)
T PF10221_consen 167 SMRSL 171 (695)
T ss_pred HHHHH
Confidence 43444
No 90
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=81.21 E-value=5 Score=43.67 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=80.0
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhcc-CCcCCeEEE----EEecCCc-cEEEECCCCCH-----HHHH
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQ-LNPENTVGV----MTMAGKG-VRVLVTPTSDL-----GKIL 73 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~-~NPes~VGL----Vtmag~~-a~vLvtlT~D~-----~kil 73 (394)
++.|.||+|-||-+. +.-++..+-.|.++..- .++...+|- .++-... +-|.+.--.|+ .++-
T Consensus 448 a~TLLvD~S~St~a~------mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~ 521 (637)
T COG4548 448 AFTLLVDVSASTDAK------MDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVG 521 (637)
T ss_pred eeEEEeecccchHHH------hhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccc
Confidence 578999999999753 33344444444444322 222222321 1221111 11111111111 1122
Q ss_pred HHhcCccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC-C----h---hHHHHHHHHHHhCCceEEEEEeC
Q 016164 74 ACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E----K---KVLEMIGRKLKKNSVALDIVNFG 145 (394)
Q Consensus 74 saL~~l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~-d----~---~~l~~~akkLKknnI~VdiI~fG 145 (394)
-.|-.++|+--+..+.||+.|..-|-||++ +++=.|||+++.-+. | . .+-..++...+|.||.|.-|-+.
T Consensus 522 ~RImALePg~ytR~G~AIR~As~kL~~rpq--~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld 599 (637)
T COG4548 522 PRIMALEPGYYTRDGAAIRHASAKLMERPQ--RQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLD 599 (637)
T ss_pred hhheecCccccccccHHHHHHHHHHhcCcc--cceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEec
Confidence 345567888889999999999999999753 566668888665543 4 1 23446678889999999988887
Q ss_pred CCC
Q 016164 146 EDD 148 (394)
Q Consensus 146 ~e~ 148 (394)
.+.
T Consensus 600 ~ea 602 (637)
T COG4548 600 REA 602 (637)
T ss_pred chh
Confidence 665
No 91
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=79.23 E-value=11 Score=34.16 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 89 ~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
.|..+|...+++.. .....+|+||+|+-. +.++=+.+|+.|+..++.|.|+.++...
T Consensus 8 Ag~~~a~~i~~~~~-~~~~~~v~il~G~Gn--NGgDgl~~AR~L~~~G~~V~v~~~~~~~ 64 (169)
T PF03853_consen 8 AGRAIAELIRKLFG-SPKGPRVLILCGPGN--NGGDGLVAARHLANRGYNVTVYLVGPPE 64 (169)
T ss_dssp HHHHHHHHHHHHST-CCTT-EEEEEE-SSH--HHHHHHHHHHHHHHTTCEEEEEEEESSS
T ss_pred HHHHHHHHHHHHhc-ccCCCeEEEEECCCC--ChHHHHHHHHHHHHCCCeEEEEEEeccc
Confidence 35667776666542 457788888877653 4788899999999999999998887754
No 92
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=77.05 E-value=34 Score=31.42 Aligned_cols=55 Identities=25% Similarity=0.189 Sum_probs=37.0
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (394)
....+|+|+|..... ....+.++++++++. ++.+.++|-|... ..++.+++..+.
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~~ 244 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLR----EELEALAKELGL 244 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccH----HHHHHHHHhcCC
Confidence 445678888876543 566788899999886 6777776655433 466677766653
No 93
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=75.28 E-value=8.5 Score=28.37 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=32.2
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+|-++|.....+++-+.++.+.|.++||+|+.|+.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4667788887788889999999999999999998876
No 94
>KOG2327 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen) [Replication, recombination and repair]
Probab=74.00 E-value=45 Score=36.77 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=91.4
Q ss_pred cceEEEEEeCChhhhCCC---CCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc------cEEEEC----CCCCH
Q 016164 3 LEATLICIDNSEWMRNGD---YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG------VRVLVT----PTSDL 69 (394)
Q Consensus 3 lEa~vIvIDnSesMrngD---~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~------a~vLvt----lT~D~ 69 (394)
.|++.+|||.|.+|+.++ +.++-|.....++..++-.+.=.||...+|++.+.... -..+.+ ++.-.
T Consensus 18 ~~~ilfvi~~~~s~~~~~~~e~~lspl~~~L~~~~~l~~~~vitn~~~~~~v~~y~~~~~~~~~~~~~l~~l~d~~~~~~ 97 (602)
T KOG2327|consen 18 KEAILFVIDVNPSMKAEEPDEFKLSPLKMILDCIDRLCIQLVITNPIDSVGVLFYGTEETEGLENNTLLFPLGDLGQEEV 97 (602)
T ss_pred ccceEEEEecCHHhhccCcccchhhhHHHHHHHHHHHHhheeecCCCCccceEeecccccccCccceEEeeccccChHHH
Confidence 589999999999999876 55899999999999999999999999999998776422 122222 33334
Q ss_pred HHHHHHhcC------ccccC----cccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCc
Q 016164 70 GKILACMHG------LEIGG----ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSV 137 (394)
Q Consensus 70 ~kilsaL~~------l~~~G----~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~--d~~~l~~~akkLKknnI 137 (394)
.+|+.-... +...| ...|.+=|......+-..+.+...+||.+|+.-+... +..+.....+++|...-
T Consensus 98 ~k~~~~~e~~~q~~~~~~~~~~~~~s~ls~vl~~c~~~~~~~~~~~~~krv~l~Td~d~P~~~~~~~~~a~l~r~k~~~~ 177 (602)
T KOG2327|consen 98 KKILELFEEENQLSAVNFYGGMHQKSDLSNVLNYCKRMVFASQKKLSNKRVFLFTDNDNPHERDDFLESAHLQRAKDLVT 177 (602)
T ss_pred HHHHHHhhhhhhhhhhhccCcccccccHHHHHHHHHHHHHHHhhhcccceEEEEecCCCcccccchHHHhhhhhhhhccc
Confidence 444433221 11111 2357777777765444444567889999998776653 33333333444443333
Q ss_pred eEEEEEeCC
Q 016164 138 ALDIVNFGE 146 (394)
Q Consensus 138 ~VdiI~fG~ 146 (394)
.+|+|+.
T Consensus 178 --~~i~~~~ 184 (602)
T KOG2327|consen 178 --KDIGFHH 184 (602)
T ss_pred --ceeeeee
Confidence 2777773
No 95
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=73.63 E-value=49 Score=30.39 Aligned_cols=77 Identities=21% Similarity=0.232 Sum_probs=46.0
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHh--CCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKK--NSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSD 182 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKk--nnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD 182 (394)
...++|+|+|..... ....+.++++++++ .++.+.++|-|... ..++.++...+ -..++....... -+.+
T Consensus 176 ~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~--~~~~v~~~g~~~-~~~~ 248 (348)
T cd03820 176 LKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPER----EALEALIKELG--LEDRVILLGFTK-NIEE 248 (348)
T ss_pred CCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCH----HHHHHHHHHcC--CCCeEEEcCCcc-hHHH
Confidence 456778888876553 56678888888874 46777777765443 46666666553 233444443322 2555
Q ss_pred hhhcCcc
Q 016164 183 VLLSTPI 189 (394)
Q Consensus 183 ~l~sspi 189 (394)
.+..+-+
T Consensus 249 ~~~~ad~ 255 (348)
T cd03820 249 YYAKASI 255 (348)
T ss_pred HHHhCCE
Confidence 5555544
No 96
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=72.86 E-value=52 Score=30.72 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=44.6
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDV 183 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn-nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~ 183 (394)
..+.+|+|+|..... +...+.++++++++. ++.+.++|-|... +.++.++...+ .++-++..-.+. .-+.+.
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~----~~~~~~~~~~~-~~~v~~~g~~~~-~~~~~~ 291 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEK----EELKELAKALG-LDNVTFLGRVPK-EELPEL 291 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccH----HHHHHHHHHcC-CCcEEEeCCCCh-HHHHHH
Confidence 455677787776543 567888889998887 7777777765443 35555543332 233333321121 235555
Q ss_pred hhcCcc
Q 016164 184 LLSTPI 189 (394)
Q Consensus 184 l~sspi 189 (394)
+..+.+
T Consensus 292 ~~~~di 297 (394)
T cd03794 292 LAAADV 297 (394)
T ss_pred HHhhCe
Confidence 555554
No 97
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=72.79 E-value=64 Score=35.22 Aligned_cols=148 Identities=11% Similarity=0.072 Sum_probs=91.1
Q ss_pred EEEEEeCChhhh---------CCC-CCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccE---EE--ECCCCC--
Q 016164 6 TLICIDNSEWMR---------NGD-YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVR---VL--VTPTSD-- 68 (394)
Q Consensus 6 ~vIvIDnSesMr---------ngD-~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~---vL--vtlT~D-- 68 (394)
.+|.||.+.|-- .-| ..||=++-+..+|-.+|..|...+-.- -..|+.+.+. +- -.+..+
T Consensus 288 f~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fp---a~GFGakip~~~~vs~~f~ln~~~~ 364 (529)
T KOG1327|consen 288 FTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFP---AFGFGAKIPPDGQVSHEFVLNFNPE 364 (529)
T ss_pred eEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccc---cccccccCCCCcccccceeecCCCC
Confidence 578888887522 223 779999999999999999876555444 3345544221 10 011111
Q ss_pred ------HHHHH----HHhcCccccCcccHHHHHHHHHHHhhhcC-CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCc
Q 016164 69 ------LGKIL----ACMHGLEIGGELNLAAGIQVAQLALKHRQ-NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV 137 (394)
Q Consensus 69 ------~~kil----saL~~l~~~G~~sL~~gL~iA~lALkhr~-~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI 137 (394)
..-++ .++-.+++.|.|+|.-=|..|..--+.-. ...+=..++|+.++-++. .+.-.+++=.+-+.=.
T Consensus 365 ~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTd-m~~T~~AIV~AS~lPl 443 (529)
T KOG1327|consen 365 DPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTD-MKETRDAIVSASDLPL 443 (529)
T ss_pred CCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCcccc-HHHHHHHHHhhccCCe
Confidence 23344 45556789999998766654433222211 112334445555666655 6666667777788888
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHH
Q 016164 138 ALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 138 ~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
.|-|||+|...+ +.++.|..
T Consensus 444 SIIiVGVGd~df---~~M~~lD~ 463 (529)
T KOG1327|consen 444 SIIIVGVGDADF---DMMRELDG 463 (529)
T ss_pred EEEEEEeCCCCH---HHHHHhhc
Confidence 999999998886 68888863
No 98
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=71.62 E-value=38 Score=31.88 Aligned_cols=43 Identities=16% Similarity=0.019 Sum_probs=30.9
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCC--ceEEEEEeCCCC
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS--VALDIVNFGEDD 148 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKknn--I~VdiI~fG~e~ 148 (394)
..+.+|+|+|..... +...+.++++++++.+ +.+.++|-+...
T Consensus 193 ~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~ 238 (365)
T cd03809 193 LPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL 238 (365)
T ss_pred CCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 345678888877654 5678889999999986 677777655443
No 99
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.82 E-value=93 Score=35.76 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=87.1
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEE-----------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRV----------------------- 61 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~v----------------------- 61 (394)
-.+++||+|-+...--| |++.+.++-.=++.+ --+|..+||+|++-... ..
T Consensus 296 vy~FliDVS~~a~ksG~----L~~~~~slL~~LD~l-pgd~Rt~igfi~fDs~i-hfy~~~~~~~qp~mm~vsdl~d~fl 369 (887)
T KOG1985|consen 296 VYVFLIDVSISAIKSGY----LETVARSLLENLDAL-PGDPRTRIGFITFDSTI-HFYSVQGDLNQPQMMIVSDLDDPFL 369 (887)
T ss_pred eEEEEEEeehHhhhhhH----HHHHHHHHHHhhhcC-CCCCcceEEEEEeecee-eEEecCCCcCCCceeeecccccccc
Confidence 45789999987654333 233333333333332 25599999999986532 21
Q ss_pred ------EECCCCCHHHHHHHhcCc------cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC---------
Q 016164 62 ------LVTPTSDLGKILACMHGL------EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--------- 120 (394)
Q Consensus 62 ------LvtlT~D~~kilsaL~~l------~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~--------- 120 (394)
|+++..-+..|-..|+++ .-.-+.+|+.||+.|...+.. ...||++|..++-+.
T Consensus 370 p~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~-----~GGri~vf~s~lPnlG~G~L~~rE 444 (887)
T KOG1985|consen 370 PMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGS-----TGGRISVFQSTLPNLGAGKLKPRE 444 (887)
T ss_pred CCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhh-----cCCeEEEEeccCCCCCcccccccc
Confidence 222222222233444443 112367899999999888865 455999998776431
Q ss_pred C-------hhH--------H-HHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 121 E-------KKV--------L-EMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 121 d-------~~~--------l-~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
+ +.. . .+++-.+-|-+|.||.--|.+.- .-.+-|.-|.+
T Consensus 445 dp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY-~DlAsLs~Lsk 499 (887)
T KOG1985|consen 445 DPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQY-TDLASLSCLSK 499 (887)
T ss_pred ccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccc-cchhhhhcccc
Confidence 1 111 1 36688899999999999999876 44555655543
No 100
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=69.79 E-value=16 Score=34.63 Aligned_cols=80 Identities=25% Similarity=0.288 Sum_probs=47.7
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSD 182 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD 182 (394)
.....|+|+|..... +...+.++++++++. ++.+.++|-|... ..++.+++..+-.++-++.--.+.. -+.+
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~~~~~v~~~g~~~~~-~l~~ 251 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLR----DELEALIAELGLEDRVTLLGAKSQE-EVRE 251 (355)
T ss_pred CCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccH----HHHHHHHHHcCCCCeEEECCcCChH-HHHH
Confidence 345567788876543 567888999999886 6777777665443 4777887776433332222212222 2556
Q ss_pred hhhcCccc
Q 016164 183 VLLSTPIF 190 (394)
Q Consensus 183 ~l~sspi~ 190 (394)
.+..+.|+
T Consensus 252 ~~~~adi~ 259 (355)
T cd03799 252 LLRAADLF 259 (355)
T ss_pred HHHhCCEE
Confidence 66555553
No 101
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=69.10 E-value=35 Score=32.85 Aligned_cols=53 Identities=28% Similarity=0.282 Sum_probs=36.5
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
...++|+|+|+.... ....+.+++++|++. ++.+.+||-|... +.++.+++..
T Consensus 186 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~----~~~~~~~~~~ 241 (367)
T cd05844 186 RRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLL----AALEALARAL 241 (367)
T ss_pred CCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHH----HHHHHHHHHc
Confidence 345678888876653 456778888888765 6777788765433 4678887764
No 102
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.60 E-value=15 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=32.0
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+|-++|......++-+.++.+.|.+.+|+|+.|+.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4667788888778888899999999999999998875
No 103
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=68.53 E-value=1e+02 Score=28.75 Aligned_cols=80 Identities=25% Similarity=0.337 Sum_probs=44.5
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSD 182 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD 182 (394)
....+|+|+|..... +...+.++++++++. ++.+.++|-|.. .+.++.+++..+..++-++.---+.. -+.+
T Consensus 200 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~-~~~~ 274 (374)
T cd03817 200 EDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE----REELEELARELGLADRVIFTGFVPRE-ELPD 274 (374)
T ss_pred CCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch----HHHHHHHHHHcCCCCcEEEeccCChH-HHHH
Confidence 345667788875543 567788889888874 566666654432 34677777655433333333222222 2444
Q ss_pred hhhcCccc
Q 016164 183 VLLSTPIF 190 (394)
Q Consensus 183 ~l~sspi~ 190 (394)
.+..+.++
T Consensus 275 ~~~~ad~~ 282 (374)
T cd03817 275 YYKAADLF 282 (374)
T ss_pred HHHHcCEE
Confidence 45444443
No 104
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=68.48 E-value=36 Score=32.64 Aligned_cols=71 Identities=24% Similarity=0.311 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 89 ~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
.|..+|+..++..+.. ...|++|| +++.+. .+|=+-+|+.|+..+..|.|+-.|.......+-..+..+..
T Consensus 32 AG~aVa~~i~~~~~~~-~~~~v~vl-cG~GnN-GGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l 102 (203)
T COG0062 32 AGLAVARAILREYPLG-RARRVLVL-CGPGNN-GGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSL 102 (203)
T ss_pred HHHHHHHHHHHHcCcc-cCCEEEEE-ECCCCc-cHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhh
Confidence 4667777777765432 24555555 555443 67888999999999999999999976633333334433333
No 105
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.94 E-value=15 Score=27.17 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=32.5
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+|-.+|+.....++-+.++.+.|.+.+|+|+.|..|.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5667788888888889999999999999999998876
No 106
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=67.82 E-value=10 Score=38.82 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=38.2
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
...|+|+|..... ....+.+++++|++. ++.+.+||-|... +.|+++++..+
T Consensus 222 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~----~~l~~~~~~~~ 276 (406)
T PRK15427 222 PLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWE----RRLRTLIEQYQ 276 (406)
T ss_pred CeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhH----HHHHHHHHHcC
Confidence 3457788877654 566788999988875 5778888877654 57888887764
No 107
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.72 E-value=21 Score=37.37 Aligned_cols=63 Identities=25% Similarity=0.381 Sum_probs=48.3
Q ss_pred CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCC
Q 016164 103 NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 103 ~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
++..++|+|++|=+++.-.|. +.-=|..|.+.|-.|++|||++.. -++++. | +.+.+++.+|+
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPR-MqYHA~Sla~~gf~VdliGy~~s~-----p~e~l~---~-hprI~ih~m~~ 70 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPR-MQYHALSLAKLGFQVDLIGYVESI-----PLEELL---N-HPRIRIHGMPN 70 (444)
T ss_pred cccccceEEEEEecccCCChH-HHHHHHHHHHcCCeEEEEEecCCC-----ChHHHh---c-CCceEEEeCCC
Confidence 466889999999999887665 444567788899999999999986 244444 3 46788888876
No 108
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=66.19 E-value=1.1e+02 Score=28.64 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=31.9
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
....+|+|+|+.... ....+.++++++++.++.+.++|-|...
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~ 232 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLEL 232 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhh
Confidence 445667788876543 5667888888888878888888877654
No 109
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=66.17 E-value=32 Score=32.05 Aligned_cols=56 Identities=25% Similarity=0.262 Sum_probs=36.7
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
..+.+|+|+|..... +...+.+++++|++. ++.+.+||-|... ....++.+++..+
T Consensus 201 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~~~ 259 (375)
T cd03821 201 PDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGG--YRAELKQIAAALG 259 (375)
T ss_pred CCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcc--hHHHHHHHHHhcC
Confidence 455678888876543 566788889999884 6777777665443 3455666655443
No 110
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=65.55 E-value=13 Score=38.71 Aligned_cols=58 Identities=10% Similarity=0.205 Sum_probs=40.6
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
....+|+|+|..... +...+.++++.+++. ++++.|||-|.+...-.+.|+++++..+
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~ 351 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLG 351 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhC
Confidence 456678898887654 667788888888775 6777777776543223467788887765
No 111
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=64.84 E-value=53 Score=30.11 Aligned_cols=80 Identities=29% Similarity=0.398 Sum_probs=45.4
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSD 182 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD 182 (394)
.....|+|+|+.... +-..+.++++.+++. ++.+.++|-| .....++.+++..+..++-++.--.+..+ +.+
T Consensus 197 ~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~-~~~ 271 (374)
T cd03801 197 EDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDG----PLREELEALAAELGLGDRVTFLGFVPDED-LPA 271 (374)
T ss_pred CCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCc----HHHHHHHHHHHHhCCCcceEEEeccChhh-HHH
Confidence 445667888876543 556778888888886 5666666622 23456677665554333333322222222 555
Q ss_pred hhhcCccc
Q 016164 183 VLLSTPIF 190 (394)
Q Consensus 183 ~l~sspi~ 190 (394)
.+..+-|+
T Consensus 272 ~~~~~di~ 279 (374)
T cd03801 272 LYAAADVF 279 (374)
T ss_pred HHHhcCEE
Confidence 55555543
No 112
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=64.83 E-value=33 Score=31.34 Aligned_cols=78 Identities=14% Similarity=0.290 Sum_probs=47.9
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhh---h
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL---L 185 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l---~ 185 (394)
+|+|+.||.. |-....++.+.|++.||.+++--.+.. .+.+.+.+|+++.+..+-.-||.+--...-|.-+| .
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH--R~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t 77 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH--RTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLT 77 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT--TSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHS
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc--CCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheecc
Confidence 5677777764 677888999999999999997655554 47889999998886523234444432222244333 3
Q ss_pred cCccc
Q 016164 186 STPIF 190 (394)
Q Consensus 186 sspi~ 190 (394)
..|++
T Consensus 78 ~~PVI 82 (150)
T PF00731_consen 78 TLPVI 82 (150)
T ss_dssp SS-EE
T ss_pred CCCEE
Confidence 44665
No 113
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=64.68 E-value=44 Score=31.68 Aligned_cols=52 Identities=31% Similarity=0.325 Sum_probs=34.4
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
....+|+|+|..... +...+.+++++++ ++.+.++|=|... ..++.+++..+
T Consensus 189 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~--~~~l~i~G~g~~~----~~~~~~~~~~~ 241 (357)
T cd03795 189 AGRPFFLFVGRLVYYKGLDVLLEAAAALP--DAPLVIVGEGPLE----AELEALAAALG 241 (357)
T ss_pred CCCcEEEEecccccccCHHHHHHHHHhcc--CcEEEEEeCChhH----HHHHHHHHhcC
Confidence 345678888876543 5566777777776 6888888876543 46677765554
No 114
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.59 E-value=20 Score=26.35 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=31.9
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+|-++|......++-+.++.+.|++.+|.|+.|+.+.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4666788887788888999999999999999999875
No 115
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=63.30 E-value=16 Score=31.71 Aligned_cols=57 Identities=16% Similarity=0.404 Sum_probs=39.4
Q ss_pred eEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCC-----------CcHHHHHHHHHHhcC
Q 016164 108 QRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDE-----------GNTEKLEALLAAVNN 164 (394)
Q Consensus 108 ~RIVlFvgSp~~~--d~~~l~~~akkLKknnI~VdiI~fG~e~~-----------~n~~~l~~~~~~vn~ 164 (394)
+||++|+||+... +..-+..+++.+++.++.+++|.+.+... ...+.++++.+++..
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~ 70 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE 70 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceec
Confidence 5899999999643 34455577888888899999999987410 123455666666653
No 116
>PF12257 DUF3608: Protein of unknown function (DUF3608); InterPro: IPR022046 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF00610 from PFAM.
Probab=61.97 E-value=25 Score=35.31 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=47.7
Q ss_pred cccHHHHHHHHHHHhhh----cCCCCCCeEEEEEecCCC--CCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 84 ELNLAAGIQVAQLALKH----RQNKKQQQRIIVFVGSPI--KHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 84 ~~sL~~gL~iA~lALkh----r~~k~~~~RIVlFvgSp~--~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
.-++..||.+|...+.+ |.-++..+-|||++-|.. ..|.+-+.-+-++|-.++|.||+|++|..-
T Consensus 202 ~gNiLEaINlaln~~~~~~idRdl~rTG~~iivITpG~Gvf~Vd~~ll~~T~~rl~~~gi~~DlIcL~~~P 272 (281)
T PF12257_consen 202 KGNILEAINLALNQFDKHYIDRDLRRTGQSIIVITPGTGVFEVDYDLLRLTTQRLLDNGIGIDLICLSKPP 272 (281)
T ss_pred cccHHHHHHHHhhhcccccccCcccccCceEEEEcCCCceEEECHHHHHHHHHHHHhcCccEEEEEcCCCC
Confidence 56788888888777642 222456777777764443 247777778899999999999999999854
No 117
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=61.42 E-value=40 Score=29.05 Aligned_cols=133 Identities=26% Similarity=0.348 Sum_probs=73.8
Q ss_pred CCCCeEEEEEecCCCCC-ChhHHHHHHHHHH---hCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCch
Q 016164 104 KKQQQRIIVFVGSPIKH-EKKVLEMIGRKLK---KNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNA 179 (394)
Q Consensus 104 k~~~~RIVlFvgSp~~~-d~~~l~~~akkLK---knnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~l 179 (394)
......+|+|+|..... +...++++++.++ ..++.+-|+|.+ .....++.+++..+-.++-+++.-.+. .-
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 85 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNLKENIIFLGYVPD-DE 85 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTCGTTEEEEESHSH-HH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----ccccccccccccccccccccccccccc-cc
Confidence 34566778888877664 6778888898887 457777777622 344678888877765555555544432 23
Q ss_pred hhhhhhcCccccCC--CCCCCc--hhHhHHHhh-------------hcCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHH
Q 016164 180 LSDVLLSTPIFTGD--GEGGSG--FAAAAAAAA-------------ASGASGYEFGVDPNLDPELALALRVSMEEERARQ 242 (394)
Q Consensus 180 LsD~l~sspi~~g~--~~~~~~--~~~~~~~~~-------------~~~~~~~efgvDp~~DPELa~Alr~SlEEe~~rq 242 (394)
|.+.+-.+.|+--- .++.+. ..+...|.+ ..+..++ =+++..--+|+-+|+.-+.....|+
T Consensus 86 l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~--~~~~~~~~~l~~~i~~~l~~~~~~~ 163 (172)
T PF00534_consen 86 LDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGF--LFDPNDIEELADAIEKLLNDPELRQ 163 (172)
T ss_dssp HHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEE--EESTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeccccccccccccccccccccccceeeccccCCceeeccccceE--EeCCCCHHHHHHHHHHHHCCHHHHH
Confidence 66666666554211 010110 001111100 0011111 1467766789999998888775554
Q ss_pred H
Q 016164 243 E 243 (394)
Q Consensus 243 ~ 243 (394)
.
T Consensus 164 ~ 164 (172)
T PF00534_consen 164 K 164 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=61.01 E-value=1.6e+02 Score=28.34 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=45.9
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn-nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
..++|+|+|..... +...+.++.+++++. ++.+-++|-|. +.+.+++++...+-.+ ++..+..-++ +.+.+
T Consensus 196 ~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~----~~~~~~~~~~~~~~~~--~v~~~g~~~~-~~~~~ 268 (371)
T cd04962 196 GEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGP----ERSPAERLARELGLQD--DVLFLGKQDH-VEELL 268 (371)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCc----CHHHHHHHHHHcCCCc--eEEEecCccc-HHHHH
Confidence 45678888876553 566777888888764 56666666543 3357778877664333 3333333333 56666
Q ss_pred hcCccc
Q 016164 185 LSTPIF 190 (394)
Q Consensus 185 ~sspi~ 190 (394)
..+.++
T Consensus 269 ~~~d~~ 274 (371)
T cd04962 269 SIADLF 274 (371)
T ss_pred HhcCEE
Confidence 555553
No 119
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=60.42 E-value=1.4e+02 Score=27.58 Aligned_cols=50 Identities=24% Similarity=0.196 Sum_probs=31.5
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
...+|+|+|..... ....+.++++++++. ++.+.++|-|... ..++.+..
T Consensus 192 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~ 244 (365)
T cd03807 192 DTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDR----ANLELLAL 244 (365)
T ss_pred CCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcch----hHHHHHHH
Confidence 34567788876653 566788888888775 5666666655544 24444544
No 120
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=59.26 E-value=1.4e+02 Score=32.79 Aligned_cols=76 Identities=11% Similarity=0.164 Sum_probs=51.7
Q ss_pred CCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 105 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 105 ~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
+...++.|++||.. |-..+.++++.|++.||..++--.|.. ...+++..|+++....+-.-+|.+--...-|.-++
T Consensus 408 ~~~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sah--r~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~ 483 (577)
T PLN02948 408 KGTPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSAH--RTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMV 483 (577)
T ss_pred CCCCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECCc--cCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHH
Confidence 34566778888865 678899999999999999886555554 57899999988776444344444433322244444
No 121
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=58.66 E-value=50 Score=36.80 Aligned_cols=95 Identities=16% Similarity=0.061 Sum_probs=58.4
Q ss_pred eEEEEEeCChhhhCCCCC-CcHHHHHHHHHHHHHHHhccCCc--CCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc-
Q 016164 5 ATLICIDNSEWMRNGDYA-PSRFQAQTEAANLICGAKTQLNP--ENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE- 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~-PsRl~Aq~~Av~~fv~~k~~~NP--es~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~- 80 (394)
.+.++||.|.||...-+. -|=|+-+|.||+.|++..++..- ..+.=++|+.---..|.+---.....++.-|+++.
T Consensus 3 i~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~~~~a~~~~eik~l~a 82 (888)
T KOG3768|consen 3 IFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACEKLGAVVIEEIKKLHA 82 (888)
T ss_pred eEEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHhhcccHHHHHHHhhcC
Confidence 468899999999888877 46888999999999997655211 12222333332211111222233344556666664
Q ss_pred ccCcccHHHHHHHHHHHhh
Q 016164 81 IGGELNLAAGIQVAQLALK 99 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALk 99 (394)
+.|.+-+++++.-|-..|.
T Consensus 83 ~~~s~~~~~~~t~AFdlLn 101 (888)
T KOG3768|consen 83 PYGSCQLHHAITEAFDLLN 101 (888)
T ss_pred ccchhhhhHHHHHHhhhhh
Confidence 4567888888887755543
No 122
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=57.68 E-value=33 Score=23.72 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.4
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 111 VlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
|-++|.+....++-+.++.+.|++++|+|+.|+-+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 445677776667888899999999999999998764
No 123
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=56.70 E-value=99 Score=32.71 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=62.2
Q ss_pred ceEEEE-EeCChhhhCCCCCCcHHHHHHHHHHHHHH---HhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc
Q 016164 4 EATLIC-IDNSEWMRNGDYAPSRFQAQTEAANLICG---AKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL 79 (394)
Q Consensus 4 Ea~vIv-IDnSesMrngD~~PsRl~Aq~~Av~~fv~---~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l 79 (394)
-|+|+| .|+|.||.. +.|+.++.|+- -|+.-..+ +|=||-++-..-..-|+=| .+.+ .
T Consensus 246 ~AVmfclMDvSGSM~~---------~~KdlAkrFF~lL~~FL~~kYe-nveivfIrHht~A~EVdE~-------dFF~-~ 307 (423)
T COG2718 246 NAVMFCLMDVSGSMDQ---------SEKDLAKRFFFLLYLFLRRKYE-NVEIVFIRHHTEAKEVDET-------DFFY-S 307 (423)
T ss_pred ceEEEEEEecCCCcch---------HHHHHHHHHHHHHHHHHhcccc-eeEEEEEeecCcceecchh-------hcee-e
Confidence 367776 599999973 44555554432 23334444 5777766654211111111 1112 2
Q ss_pred cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCC---C-ChhHHHHHHHHH
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---H-EKKVLEMIGRKL 132 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~---~-d~~~l~~~akkL 132 (394)
+-.|+|-+.+||+.++..++.|-++ +.=-|-.|-.|+.. . ++.-+.-+.++|
T Consensus 308 ~esGGTivSSAl~~m~evi~ErYp~-aeWNIY~fqaSDGDN~~dDserc~~ll~~~i 363 (423)
T COG2718 308 QESGGTIVSSALKLMLEVIKERYPP-AEWNIYAFQASDGDNWADDSERCVELLAKKL 363 (423)
T ss_pred cCCCCeEeHHHHHHHHHHHHhhCCh-hheeeeeeeecCCccccCCCHHHHHHHHHHH
Confidence 3468889999999999999988543 44455566655553 2 344444445333
No 124
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=55.79 E-value=1.4e+02 Score=29.30 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=43.6
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC------CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCch
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN------SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNA 179 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn------nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~l 179 (394)
...+|+++|..... +...+.++++.+.+. ++.+-+||=|.. .+.++++++..+- .+.+.++....-
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~----~~~~~~~~~~~~~---~~~v~~~g~~~~ 265 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPA----RGACEQMVRAAGL---AHLVWLPGERDD 265 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCch----HHHHHHHHHHcCC---cceEEEcCCcCC
Confidence 35678888876653 566777887777654 466666664433 3567888766542 222333221112
Q ss_pred hhhhhhcCccc
Q 016164 180 LSDVLLSTPIF 190 (394)
Q Consensus 180 LsD~l~sspi~ 190 (394)
+.+.+..+.|+
T Consensus 266 ~~~~~~~adi~ 276 (374)
T TIGR03088 266 VPALMQALDLF 276 (374)
T ss_pred HHHHHHhcCEE
Confidence 55556555554
No 125
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=55.54 E-value=50 Score=30.52 Aligned_cols=54 Identities=33% Similarity=0.383 Sum_probs=35.2
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
...+.|+|+|+.... ....+.++++++++. ++.+.++|-|... ..++.+++..+
T Consensus 200 ~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~----~~~~~~~~~~~ 256 (377)
T cd03798 200 EDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR----EALEALAAELG 256 (377)
T ss_pred CCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcch----HHHHHHHHhcC
Confidence 356678888876543 566788888888876 5666666554433 46666665443
No 126
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.88 E-value=36 Score=25.78 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=32.1
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
+|-.||. ....++-+.++.+.|.++||+|..|..|+..
T Consensus 3 ~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 3 IISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred EEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 5778888 6656777779999999999999999999875
No 127
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=53.63 E-value=36 Score=31.56 Aligned_cols=58 Identities=12% Similarity=0.239 Sum_probs=45.1
Q ss_pred cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
...|+.+...|+.+..++.+. +-.+||+|+| -.+..-+++.++..|.+|.+++++...
T Consensus 89 ~~k~~vDv~la~D~~~l~~~~-----~~D~ivl~Sg------D~DF~p~v~~~~~~G~rv~v~~~~~~~ 146 (181)
T COG1432 89 ITKGDVDVELAVDAMELADKK-----NVDTIVLFSG------DGDFIPLVEAARDKGKRVEVAGIEPMT 146 (181)
T ss_pred ccccCcchhhHHHHHHhhccc-----CCCEEEEEcC------CccHHHHHHHHHHcCCEEEEEecCCcC
Confidence 346888988899988888653 6677888742 235566799999999999999999943
No 128
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=53.43 E-value=22 Score=30.69 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=25.1
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
+||++.+++.... .+ ...++++|++.++.|++|-
T Consensus 1 k~i~l~vtGs~~~-~~-~~~~l~~L~~~g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIAA-YK-APDLLRRLKRAGWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGGG-GG-HHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEEEECHHHH-HH-HHHHHHHHhhCCCEEEEEE
Confidence 5788887666544 33 8899999999999998764
No 129
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=52.99 E-value=1.5e+02 Score=25.66 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=44.1
Q ss_pred HHHHHhcCccccC--cccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 016164 71 KILACMHGLEIGG--ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 145 (394)
Q Consensus 71 kilsaL~~l~~~G--~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG 145 (394)
.+...+.++.+.+ +-+...++.+....+. .+..+..+||++|+--.....++.++++++++ +.+|.+|+.-
T Consensus 16 ~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~---~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~~-~~~ivlv~~~ 88 (150)
T cd01840 16 ALQEIFPNIQIDAKVGRQMSEAPDLIRQLKD---SGKLRKTVVIGLGTNGPFTKDQLDELLDALGP-DRQVYLVNPH 88 (150)
T ss_pred HHHHHCCCCEEEeeecccHHHHHHHHHHHHH---cCCCCCeEEEEecCCCCCCHHHHHHHHHHcCC-CCEEEEEECC
Confidence 3334444544433 2344566666654433 22355677777777766678999999999964 6777777665
No 130
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=52.30 E-value=1.4e+02 Score=31.36 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=77.5
Q ss_pred ceEEEE-EeCChhhhCCCCCCcHHHHHHHHHHHHH---HHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc
Q 016164 4 EATLIC-IDNSEWMRNGDYAPSRFQAQTEAANLIC---GAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL 79 (394)
Q Consensus 4 Ea~vIv-IDnSesMrngD~~PsRl~Aq~~Av~~fv---~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l 79 (394)
.|+||| +|+|.||.. ..|+.++.|+ -.|+..+.+ +|=|+-++-.....-|+ - -.+.+ .
T Consensus 202 ~AV~fc~MDvSGSM~~---------~~K~lak~ff~~ly~FL~~~Y~-~VeivFI~H~t~AkEVd----E---eeFF~-~ 263 (371)
T TIGR02877 202 NAVVIAMMDTSGSMGQ---------FKKYIARSFFFWMVKFLRTKYE-NVEICFISHHTEAKEVT----E---EEFFH-K 263 (371)
T ss_pred cEEEEEEEeCCCCCCH---------HHHHHHHHHHHHHHHHHHhccC-ceEEEEEeecCeeEEcC----H---HHhcc-c
Confidence 467776 599999953 3455554442 233444453 67777666542111111 1 12222 2
Q ss_pred cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCC---CChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHH
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---HEKKVLEMIGRKLKKNSVALDIVNFGEDDE--GNTEK 154 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~---~d~~~l~~~akkLKknnI~VdiI~fG~e~~--~n~~~ 154 (394)
.-.|+|-+..|+++|+..++.|-++ ..=-|=+|=.|+.. .|.....++.++|-. .|..+++|+-.. ....+
T Consensus 264 ~EsGGT~vSSA~~l~~eII~~rYpp-~~wNIY~f~aSDGDNw~~D~~~c~~ll~~llp---~~~~f~Y~Ei~~~~~~~~l 339 (371)
T TIGR02877 264 GESGGTYCSSGYKKALEIIDERYNP-ARYNIYAFHFSDGDNLTSDNERAVKLVRKLLE---VCNLFGYGEIMPYGYSNTL 339 (371)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCCh-hhCeeEEEEcccCCCccCCcHHHHHHHHHHHH---hhheEEEEEecCCCCcchH
Confidence 3468889999999999999987433 44445556566554 243334444433322 266777877552 12467
Q ss_pred HHHHHHHhc
Q 016164 155 LEALLAAVN 163 (394)
Q Consensus 155 l~~~~~~vn 163 (394)
+..|-..+.
T Consensus 340 ~~~y~~~i~ 348 (371)
T TIGR02877 340 KNKFKNEIK 348 (371)
T ss_pred HHHHHhhhc
Confidence 777644364
No 131
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=52.26 E-value=2e+02 Score=26.85 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.0
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCC
Q 016164 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDD 148 (394)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~akkLKkn-nI~VdiI~fG~e~ 148 (394)
+.+|+|+|..... +...+.++++++++. ++.+.++|-|...
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~ 239 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPAR 239 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchH
Confidence 5667888875443 566788888888774 7888888866543
No 132
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=51.36 E-value=56 Score=30.77 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 90 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 90 gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
|..+|...+++.+ ..+||+||.|+-+ +.+|=+.+|+.|+..+|.|.+++...
T Consensus 31 g~~va~~i~~~~~---~~~~v~vl~G~GN--NGGDGlv~AR~L~~~~v~V~~~~~~~ 82 (205)
T TIGR00197 31 GKAVAQAVLQAFP---LAGHVIIFCGPGN--NGGDGFVVARHLKGFGVEVFLLKKEK 82 (205)
T ss_pred HHHHHHHHHHHcC---CCCeEEEEECCCC--CccHHHHHHHHHHhCCCEEEEEccCC
Confidence 4455555555432 2456776655543 36777889999998899888887655
No 133
>PRK05325 hypothetical protein; Provisional
Probab=50.20 E-value=1.3e+02 Score=31.78 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=77.2
Q ss_pred ceEEEE-EeCChhhhCCCCCCcHHHHHHHHHHHHH---HHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc
Q 016164 4 EATLIC-IDNSEWMRNGDYAPSRFQAQTEAANLIC---GAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL 79 (394)
Q Consensus 4 Ea~vIv-IDnSesMrngD~~PsRl~Aq~~Av~~fv---~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l 79 (394)
.||||| .|+|.||.. ..|+.++.|+ -.|+.-+. .+|=+|-++-..-..-|+ - -.+. ..
T Consensus 222 ~AVmfclMDvSGSM~~---------~~K~lakrff~lly~fL~r~Y-~~vEvvFI~H~t~AkEVd----E---eeFF-~~ 283 (401)
T PRK05325 222 QAVMFCLMDVSGSMDE---------AEKDLAKRFFFLLYLFLRRKY-ENVEVVFIRHHTEAKEVD----E---EEFF-YS 283 (401)
T ss_pred cEEEEEEEeCCCCCch---------HHHHHHHHHHHHHHHHHHhcc-CceEEEEEeecCceeEcC----H---HHcc-cc
Confidence 477776 599999974 3444444332 23344444 467777666542111111 1 1122 23
Q ss_pred cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCC---CChhHHHHHHH-HHHhCCceEEEEEeCCCCCC---cH
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---HEKKVLEMIGR-KLKKNSVALDIVNFGEDDEG---NT 152 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~---~d~~~l~~~ak-kLKknnI~VdiI~fG~e~~~---n~ 152 (394)
.-.|+|-+..|+++|+..+..|-++ ..=-|=+|=.|+.. .|.....++.+ +|-. .|...++++-... +.
T Consensus 284 ~esGGT~vSSA~~l~~eIi~~rYpp-~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp---~~~~f~Y~Ev~~~~~~~~ 359 (401)
T PRK05325 284 RESGGTIVSSAYKLALEIIEERYPP-AEWNIYAFQASDGDNWSSDNPRCVELLREELLP---VCNYFAYIEVTPRAYRHQ 359 (401)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCCH-hHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHH---HhhheEEEEecCCCCCch
Confidence 4478899999999999999987433 33445556566654 24444444433 3221 3566777774421 45
Q ss_pred HHHHHHHHHhcC
Q 016164 153 EKLEALLAAVNN 164 (394)
Q Consensus 153 ~~l~~~~~~vn~ 164 (394)
.++..+- .+..
T Consensus 360 ~l~~~y~-~i~~ 370 (401)
T PRK05325 360 TLWREYE-RLQD 370 (401)
T ss_pred HHHHHHH-Hhhc
Confidence 6666664 6653
No 134
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=50.17 E-value=80 Score=29.97 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=45.4
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSD 182 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD 182 (394)
...++|+|+|+.... ....+.++++++++. ++.+.++|-|... +.++++++..+-.++=++ +.+-.+ +.+
T Consensus 186 ~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~----~~~~~~~~~~~~~~~v~~--~g~~~~-~~~ 258 (360)
T cd04951 186 NDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLR----ATLERLIKALGLSNRVKL--LGLRDD-IAA 258 (360)
T ss_pred CCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcH----HHHHHHHHhcCCCCcEEE--eccccc-HHH
Confidence 345778888876543 556778888888775 6777777755543 467777766543232222 322222 445
Q ss_pred hhhcCcc
Q 016164 183 VLLSTPI 189 (394)
Q Consensus 183 ~l~sspi 189 (394)
.+..+.+
T Consensus 259 ~~~~ad~ 265 (360)
T cd04951 259 YYNAADL 265 (360)
T ss_pred HHHhhce
Confidence 5555544
No 135
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=49.76 E-value=2.2e+02 Score=27.79 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=35.7
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
....|+|+|..... +...+.++.+++++. ++++.++|.|... ..++.+++..+
T Consensus 203 ~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~----~~~~~~~~~~~ 258 (372)
T cd04949 203 KPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEE----EKLKELIEELG 258 (372)
T ss_pred CCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchH----HHHHHHHHHcC
Confidence 34457788876543 556777777777654 6888999988764 36677765543
No 136
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=49.71 E-value=58 Score=31.82 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=27.2
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
..||+||.|+-+ +.+|=+-+|+.|+..|++|.|+-
T Consensus 60 ~~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 60 HPRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CCeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEE
Confidence 357776655543 36788899999999999999887
No 137
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=48.86 E-value=81 Score=31.62 Aligned_cols=55 Identities=20% Similarity=0.114 Sum_probs=36.1
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCC--ceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEALLAAVNN 164 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKknn--I~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (394)
..+.+|+|+|..... +...+.++++.+++.+ +.+-++|-|.. .+.|+++++..+-
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l 248 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPK----RILLEEMREKYNL 248 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCch----HHHHHHHHHHhCC
Confidence 345678888876543 5667888888887754 55555554432 3578888877643
No 138
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=48.64 E-value=2.8e+02 Score=27.34 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=48.1
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCC-CcHHHHHHHHHHhcCCCCcEEEEcCC-CCchh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDE-GNTEKLEALLAAVNNNDSSHLVHVPP-GPNAL 180 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~-~n~~~l~~~~~~vn~~~~S~~v~vp~-g~~lL 180 (394)
..+.+|+|+|..... +...+.++.+++++. ++.+-++|-|.... +..+.++++.+..+..++-+++..++ ....+
T Consensus 188 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 267 (372)
T cd03792 188 PERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEV 267 (372)
T ss_pred CCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHH
Confidence 456688888876544 566677888777664 68888888775421 12345566665444334444444331 22335
Q ss_pred hhhhhcCccc
Q 016164 181 SDVLLSTPIF 190 (394)
Q Consensus 181 sD~l~sspi~ 190 (394)
.+.+-.+-++
T Consensus 268 ~~~~~~ad~~ 277 (372)
T cd03792 268 NALQRASTVV 277 (372)
T ss_pred HHHHHhCeEE
Confidence 5555444443
No 139
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=48.54 E-value=63 Score=30.20 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=40.4
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
++|+|||.....=--.+.|+|..+++++-+|-+|+.-.---.-.+-|+.+++.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 5788888776543446789999999889999999987643245778999998884
No 140
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=48.52 E-value=2.7e+02 Score=27.57 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=34.7
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhCC----ceEEEEEeCCCCC-CcHHHHHHHHHHhc
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS----VALDIVNFGEDDE-GNTEKLEALLAAVN 163 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKknn----I~VdiI~fG~e~~-~n~~~l~~~~~~vn 163 (394)
.+.+|+|+|..... ....+.+++++|++.+ +.+-+||-+...+ ...+.++.+++..+
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~ 280 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELG 280 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcC
Confidence 45678888877654 5667888888886653 4455555221111 12456777777664
No 141
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=48.09 E-value=54 Score=25.20 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=30.2
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 111 VlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
|-++|.....+++-+.++.+.|.+.+|.++.|+.+.
T Consensus 4 I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 4 INIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 455677777778888899999999999999999874
No 142
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=47.55 E-value=41 Score=32.43 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=45.4
Q ss_pred CCCCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCCc-----HHHHHHHHHHhcCCCCcEEEEcCC
Q 016164 104 KKQQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDEGN-----TEKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 104 k~~~~RIVlFvgSp~~~--d~~~l~~~akkLKknnI~VdiI~fG~e~~~n-----~~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
++...+|++|+||.... +..-+..+++.+...++.|.+|.+..-...| .+-.+.|.+.+..-| -+|.+.|
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~AD--gvii~TP 99 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSE--GQVWCSP 99 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCC--EEEEeCC
Confidence 55778999999999875 4445556677777679999999987522122 234556666665333 3444544
No 143
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=47.52 E-value=13 Score=37.14 Aligned_cols=34 Identities=38% Similarity=0.509 Sum_probs=27.9
Q ss_pred CchHHHHHHHHhcCCCCCCCCCCCCCCCCCCChHHHHHHHHhcccc
Q 016164 291 HDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQD 336 (394)
Q Consensus 291 ~e~~~L~~Al~~S~~~~~~~~~~~~~~~~~~e~~~ia~A~~ms~~~ 336 (394)
.++.-|++|++||+++. .+||+.+..|++.||+.
T Consensus 217 q~e~d~a~a~a~s~~et------------~~ede~lrsaie~s~~~ 250 (315)
T KOG2935|consen 217 QDEEDLARALALSRQET------------EMEDEDLRSAIELSMQS 250 (315)
T ss_pred cchHHHHHHHHHHHhhh------------hcccHHHHHHHHhhhhh
Confidence 56678999999997654 24677999999999995
No 144
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.55 E-value=54 Score=23.50 Aligned_cols=34 Identities=12% Similarity=0.337 Sum_probs=27.5
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 016164 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (394)
Q Consensus 111 VlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~f 144 (394)
|-++|......++-+.++.+.|.+.+|+|+.|+-
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4456766666677788999999999999999983
No 145
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=46.13 E-value=1.2e+02 Score=26.14 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEcCCCCc
Q 016164 122 KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPN 178 (394)
Q Consensus 122 ~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~--~v~vp~g~~ 178 (394)
..-.....|.+++-||.+.++-|.+.. ..+-+...++++|.+.+-| +|-.|--++
T Consensus 44 ~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~lN~D~~V~GIlvq~PLP~~ 100 (117)
T PF00763_consen 44 ISYVRSKQKAAEKLGIEFELIELPEDI--SEEELLELIEKLNEDPSVHGILVQLPLPKH 100 (117)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEEE-TTS--SHHHHHHHHHHHHH-TT-SEEEEESSSSTT
T ss_pred HHHHHHHHHHHHHcCCceEEEECCCCc--CHHHHHHHHHHHhCCCCCCEEEEcCCCCCC
Confidence 334556788999999999999998776 3566677778898765433 444444334
No 146
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=46.12 E-value=56 Score=23.43 Aligned_cols=34 Identities=12% Similarity=0.314 Sum_probs=27.4
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 016164 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (394)
Q Consensus 111 VlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~f 144 (394)
|-++|.....+++-+.++.+.|.+.||+|+.|+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4456766666677788999999999999999973
No 147
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=45.95 E-value=57 Score=23.01 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=28.9
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 111 VlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
|-++|......++-+.++.+.|.+.+|+|+.|+-+.
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 455677776667778899999999999999887654
No 148
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=44.84 E-value=2.7e+02 Score=26.12 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=28.8
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCC
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGED 147 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e 147 (394)
....+|+|+|..... +...+.++++++++. ++.+.++|-|..
T Consensus 183 ~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~ 227 (366)
T cd03822 183 DGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHP 227 (366)
T ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCcc
Confidence 345678888876653 567788888888886 566666655443
No 149
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=44.69 E-value=62 Score=24.78 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=32.8
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
-+|-.||.... .++-+.++.+.|.+++|+|..|..|+..
T Consensus 3 a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 3 AIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred EEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 36778898885 6777789999999999999999999864
No 150
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=44.14 E-value=51 Score=26.00 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=34.8
Q ss_pred ceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccC
Q 016164 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQL 43 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~ 43 (394)
..++|++|.+.+|.-+.-.+..++....++..++....++
T Consensus 41 ~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~ 80 (86)
T PF01882_consen 41 QPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQ 80 (86)
T ss_pred CcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999888999999999998888876655
No 151
>PF10293 DUF2405: Domain of unknown function (DUF2405); InterPro: IPR019409 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region found within FMP27.
Probab=43.81 E-value=35 Score=31.25 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=24.2
Q ss_pred CCCCCH---HHHHHHHhcHHHHHHHHHHHHHH
Q 016164 220 DPNLDP---ELALALRVSMEEERARQEAAAKR 248 (394)
Q Consensus 220 Dp~~DP---ELa~Alr~SlEEe~~rq~~~~~~ 248 (394)
.-++|| ||.|-.|+-+.|+|+|.++++.=
T Consensus 112 ~~eDDPFE~~L~~Iy~lGl~Eq~~Rl~r~~~F 143 (157)
T PF10293_consen 112 ELEDDPFESELGMIYRLGLDEQRERLEREEAF 143 (157)
T ss_pred EEeCCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 446677 99999999999999998887643
No 152
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=43.21 E-value=92 Score=33.31 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 90 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 90 gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
|..+|...+++.+ +...+||+|| +++.+ +.+|=+-+|+.|+..|+.|.|+-++...
T Consensus 43 G~ava~~i~~~~~-~~~~~~VlVl-cG~GN-NGGDGlv~AR~L~~~G~~V~v~~~~~~~ 98 (462)
T PLN03049 43 GLSVASAIAEVYS-PSEYRRVLAL-CGPGN-NGGDGLVAARHLHHFGYKPSICYPKRTD 98 (462)
T ss_pred HHHHHHHHHHhcc-cccCCEEEEE-ECCCC-CHHHHHHHHHHHHHCCCceEEEEECCCC
Confidence 4555655554432 2123566665 55544 3778888999999999999999988643
No 153
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=42.78 E-value=43 Score=28.38 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 016164 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~f 144 (394)
.+..-++.+...++.+. . ..+||+ .++ +++..++++|+..|++|.++++
T Consensus 79 ~D~~l~~d~~~~~~~~~----~-d~ivLv-SgD-----~Df~~~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 79 VDVALAVDILELAYENP----P-DTIVLV-SGD-----SDFAPLVRKLRERGKRVIVVGA 127 (146)
T ss_dssp -HHHHHHHHHHHG--GG------SEEEEE---------GGGHHHHHHHHHH--EEEEEE-
T ss_pred cHHHHHHHHHHHhhccC----C-CEEEEE-ECc-----HHHHHHHHHHHHcCCEEEEEEe
Confidence 44444444444444432 2 555554 333 6788999999999999999996
No 154
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=42.74 E-value=1.4e+02 Score=27.62 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 122 KKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 122 ~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
++.+.+.++.++++++.|.|.+-|-+.
T Consensus 39 p~~~~~~~~~a~~~g~~viIa~AG~aa 65 (156)
T TIGR01162 39 PELMLEYAKEAEERGIKVIIAGAGGAA 65 (156)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 444555555555555555444444443
No 155
>PRK15045 cellulose biosynthesis protein BcsE; Provisional
Probab=42.48 E-value=1.7e+02 Score=31.94 Aligned_cols=116 Identities=12% Similarity=0.135 Sum_probs=62.3
Q ss_pred hccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCC
Q 016164 40 KTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK 119 (394)
Q Consensus 40 k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~ 119 (394)
...+....+|.+|+++++ ++.+.++..+.+- .++.+.--+.=..||.-=..=|.. .-+++.|.+||.+.-..
T Consensus 43 i~~q~~~~r~alI~~~~~-~~~ll~l~~~~gp-----~~l~lf~lp~~~~al~~l~~dl~~--~~~~~~~l~il~~~~~~ 114 (519)
T PRK15045 43 IASQAETAHVAVISMDSD-PAKIFQLDDSQGP-----EKIRLFSMPNHEKGLYYLPRDLQC--SIDPHNYLFILVCANNA 114 (519)
T ss_pred HHhCCCCCeEEEEecCCC-hHHhhcCcccCCC-----ceeeeeecCCCHHHHHHhhHHHhh--ccCCCCcEEEEEccHHH
Confidence 335888899999998887 4444444432221 111111111112233222222222 23477788777654432
Q ss_pred ---CChhH----HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 120 ---HEKKV----LEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 120 ---~d~~~----l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
-...+ +.++.+-+++.+..+-||+.|.....-...|-.+...+.
T Consensus 115 w~~~~~~~l~~wl~~l~~w~~~~~~tLLvI~~g~~~~~~~~~L~~~~r~l~ 165 (519)
T PRK15045 115 WQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLMEEYRSLF 165 (519)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhhHHHHHHhhhhcc
Confidence 23333 345666678899999999999987311344555554443
No 156
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=42.14 E-value=1.4e+02 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=27.2
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceE
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVAL 139 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~V 139 (394)
..+|+|++++...+++.+.++.+.+.++++.+
T Consensus 94 g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 125 (243)
T PLN02726 94 GDFVVIMDADLSHHPKYLPSFIKKQRETGADI 125 (243)
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcE
Confidence 46899999999889999999999988777644
No 157
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=41.63 E-value=1.2e+02 Score=29.70 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=35.5
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC-----CceEEEEEeCCCCC-C---cHHHHHHHHHH
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-----SVALDIVNFGEDDE-G---NTEKLEALLAA 161 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn-----nI~VdiI~fG~e~~-~---n~~~l~~~~~~ 161 (394)
....+|+++|..... +...+.++++++++. ++.+.++|=|.... . ..+.|+.+++.
T Consensus 209 ~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~ 274 (392)
T cd03805 209 SGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEE 274 (392)
T ss_pred CCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHH
Confidence 344667777776554 677889999999876 56666655443320 1 13567777766
No 158
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=41.33 E-value=46 Score=26.09 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=27.9
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 016164 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (394)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~f 144 (394)
.++||++.+.+.. ..+-..++.++|.+.++.|.++.|
T Consensus 43 ~~~vii~~D~D~a-G~~a~~~~~~~l~~~g~~~~~~~~ 79 (79)
T cd03364 43 AKEVILAFDGDEA-GQKAALRALELLLKLGLNVRVLTL 79 (79)
T ss_pred CCeEEEEECCCHH-HHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5678888776632 244567899999999999998864
No 159
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=40.47 E-value=2.3e+02 Score=29.98 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=68.2
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC-----CCHHHHHHHhcCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT-----SDLGKILACMHGL 79 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT-----~D~~kilsaL~~l 79 (394)
-+++.+|+|.||.- | +|| .=.|+++..++.+.+. +..|.-. |+..| .|....+..+...
T Consensus 220 ~lvvL~DVSGSm~~--y--s~~------~L~l~hAl~q~~~R~~--~F~F~TR----Lt~vT~~l~~rD~~~Al~~~~a~ 283 (395)
T COG3552 220 PLVVLCDVSGSMSG--Y--SRI------FLHLLHALRQQRSRVH--VFLFGTR----LTRVTHMLRERDLEDALRRLSAQ 283 (395)
T ss_pred CeEEEEecccchhh--h--HHH------HHHHHHHHHhccccee--EEEeech----HHHHHHHhccCCHHHHHHHHHhh
Confidence 36889999999951 2 232 2235666667777666 5566533 22223 4555555555432
Q ss_pred --cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhC
Q 016164 80 --EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN 135 (394)
Q Consensus 80 --~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKkn 135 (394)
.-.|++-+++.+.- .+..-|+..=..+.-|||+.++--..+...+.....+|.+.
T Consensus 284 v~dw~ggTrig~tl~a-F~~~~~~~~L~~gA~VlilsDg~drd~~~~l~~~~~rl~rr 340 (395)
T COG3552 284 VKDWDGGTRIGNTLAA-FLRRWHGNVLSGGAVVLILSDGLDRDDIPELVTAMARLRRR 340 (395)
T ss_pred cccccCCcchhHHHHH-HHccccccccCCceEEEEEecccccCCchHHHHHHHHHHHh
Confidence 34688888887642 22222443334557778887777767777787777776643
No 160
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.86 E-value=3.8e+02 Score=27.03 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=47.9
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEcCCCCchhhhhhh
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 185 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~--~v~vp~g~~lLsD~l~ 185 (394)
++.++.-++...+..-.....|.+++-||.+..+-|.+.. ... -+...++++|.+..-| +|-.|--+++-...++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~-~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~ 110 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETI-SQE-ELLDLIERYNQDPTWHGILVQLPLPKHINEEKIL 110 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHH
Confidence 4444444443444445556789999999999999999887 444 4456778998766544 5555544454344443
No 161
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=39.83 E-value=78 Score=27.25 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=47.5
Q ss_pred CHHHHHHHhcCc--c----c-------cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHh
Q 016164 68 DLGKILACMHGL--E----I-------GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKK 134 (394)
Q Consensus 68 D~~kilsaL~~l--~----~-------~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKk 134 (394)
...+....|+.. . + ....++.-++.+..++..+ ....|||++ ++ .+..-++++|++
T Consensus 53 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~-----~~d~ivLvS-gD-----~Df~~~i~~lr~ 121 (149)
T cd06167 53 RQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKR-----RIDTIVLVS-GD-----SDFVPLVERLRE 121 (149)
T ss_pred hHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhc-----CCCEEEEEE-CC-----ccHHHHHHHHHH
Confidence 456666667643 1 1 1245555555555555433 445666653 32 378889999999
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHH
Q 016164 135 NSVALDIVNFGEDDEGNTEKLEALL 159 (394)
Q Consensus 135 nnI~VdiI~fG~e~~~n~~~l~~~~ 159 (394)
.|++|-++++.... ...|+..+
T Consensus 122 ~G~~V~v~~~~~~~---s~~L~~~~ 143 (149)
T cd06167 122 LGKRVIVVGFEAKT---SRELRKAA 143 (149)
T ss_pred cCCEEEEEccCccC---hHHHHHhC
Confidence 99999999998333 24555444
No 162
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=39.42 E-value=1.6e+02 Score=27.97 Aligned_cols=132 Identities=16% Similarity=0.131 Sum_probs=65.7
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSD 182 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD 182 (394)
....+|+|+|..... ....+.+++++|++. ++++.+||=|.. .+.++.+++..+-.+ ++.......+ +.+
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~----~~~~~~~~~~~~~~~--~v~~~g~~~~-~~~ 262 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGEL----EEEIKKKVKELGLED--KVIFLGVRND-VPE 262 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCch----HHHHHHHHHhcCCCC--cEEEecccCC-HHH
Confidence 456678888886543 556788889999876 455555553332 356777776543222 3333333222 445
Q ss_pred hhhcCcccc----CCCCCCCchhHhHHHhh-----hcCCC----CCccCCCCCCC-HHHHHHHHhcHHHHHHHHHH
Q 016164 183 VLLSTPIFT----GDGEGGSGFAAAAAAAA-----ASGAS----GYEFGVDPNLD-PELALALRVSMEEERARQEA 244 (394)
Q Consensus 183 ~l~sspi~~----g~~~~~~~~~~~~~~~~-----~~~~~----~~efgvDp~~D-PELa~Alr~SlEEe~~rq~~ 244 (394)
.+-.+-|+- -|+.+-.-..+.+.|.+ .+|.. .-..+++++.| -+||-||+--++....|+..
T Consensus 263 ~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 263 LLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSS 338 (358)
T ss_pred HHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhhhh
Confidence 554444321 11110000111111110 00000 00113455666 78999999888766655443
No 163
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=38.84 E-value=1.7e+02 Score=30.26 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=38.2
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (394)
...+|+|+|..... ....+.+++++|++.++.+-|+|-|... -.+.|+.++..
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~--~~~~l~~~~~~ 343 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPE--LEEALRELAER 343 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHH--HHHHHHHHHHH
Confidence 46688888877654 5667889999998888888888877522 23567777654
No 164
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=38.84 E-value=2.4e+02 Score=26.17 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=41.3
Q ss_pred ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
..|.+++.-+|..--++..+ .--.+||+ .|+ +|...++.+|+..|++|.+||+..-. =..|.+
T Consensus 85 ~kG~~Dv~laIDame~~~~~-----~iD~~vLv-SgD-----~DF~~Lv~~lre~G~~V~v~g~~~~t------s~~L~~ 147 (160)
T TIGR00288 85 VAGDVDVRMAVEAMELIYNP-----NIDAVALV-TRD-----ADFLPVINKAKENGKETIVIGAEPGF------STALQN 147 (160)
T ss_pred ecCcccHHHHHHHHHHhccC-----CCCEEEEE-ecc-----HhHHHHHHHHHHCCCEEEEEeCCCCC------hHHHHH
Confidence 35666666555554333221 23334443 333 45677999999999988777753322 234544
Q ss_pred HhcCCCCcEEEEcCCC
Q 016164 161 AVNNNDSSHLVHVPPG 176 (394)
Q Consensus 161 ~vn~~~~S~~v~vp~g 176 (394)
+. ++|+.+.+.
T Consensus 148 ac-----d~FI~L~~~ 158 (160)
T TIGR00288 148 SA-----DIAIILGEE 158 (160)
T ss_pred hc-----CeEEeCCCC
Confidence 33 367666543
No 165
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=38.77 E-value=31 Score=33.26 Aligned_cols=28 Identities=32% Similarity=0.717 Sum_probs=24.6
Q ss_pred CCHHHHHHHHhcCC--------------CCCCC-ChHHHHHHH
Q 016164 352 ADQAFVSSILASLP--------------GVDPE-DPSVKDVLT 379 (394)
Q Consensus 352 ~d~~fl~s~l~~lp--------------gvdpn-~~~i~~~~~ 379 (394)
-.|+||..+|...| ||||| ||.+-.||+
T Consensus 173 P~p~ll~~~~~~spig~g~~g~~~~~e~gvDp~lDpELA~Alr 215 (243)
T COG5148 173 PNPELLDRVLPFSPIGQGVVGDDLQLEYGVDPNLDPELAEALR 215 (243)
T ss_pred CCHHHHHhhccCCccccccccCccceecCCCCCCCHHHHHHHH
Confidence 57999999999988 69999 898888885
No 166
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=38.62 E-value=1.7e+02 Score=29.42 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=29.4
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCC
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGED 147 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e 147 (394)
..++|+|+|..... +...+.++.+++++. ++.+-+||-|..
T Consensus 192 ~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~ 235 (380)
T PRK15484 192 DETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTA 235 (380)
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 45778888876654 556678888888654 678888887654
No 167
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=36.77 E-value=1e+02 Score=26.21 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=17.5
Q ss_pred CChhHHHHHHHHHHhCCceEEEEE
Q 016164 120 HEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 120 ~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
.+...+.++++.+|+.+.+|-+|.
T Consensus 73 ~t~~~~~~~~~~~~~~~~~vi~it 96 (153)
T cd05009 73 RLEEKLESLIKEVKARGAKVIVIT 96 (153)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEe
Confidence 334568889999999988655553
No 168
>PRK10307 putative glycosyl transferase; Provisional
Probab=36.44 E-value=1.3e+02 Score=30.19 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=34.4
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~akkLKkn-nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
..+|+|+|..... +-..+.++++++++. ++.+-|||=|.. .+.|+++++..+
T Consensus 229 ~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~----~~~l~~~~~~~~ 282 (412)
T PRK10307 229 KKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGG----KARLEKMAQCRG 282 (412)
T ss_pred CEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCChh----HHHHHHHHHHcC
Confidence 4578888877654 567788888888654 466666665543 356777776554
No 169
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=36.00 E-value=1.3e+02 Score=27.04 Aligned_cols=62 Identities=10% Similarity=0.157 Sum_probs=44.4
Q ss_pred ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCC--------CCh-hHHHHHHHHHHhCCceEEEEEeC
Q 016164 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK--------HEK-KVLEMIGRKLKKNSVALDIVNFG 145 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~--------~d~-~~l~~~akkLKknnI~VdiI~fG 145 (394)
|.|.-+..+|++.|..+|+. .++--||-+|-++-.. .|+ ..+...-+.+.+.||.|.+-.=.
T Consensus 11 pYg~q~a~~A~~fA~all~~---gh~~v~iFly~DgV~~~~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C~~c 81 (126)
T COG1553 11 PYGTESAFSALRFAEALLEQ---GHELVRLFLYQDGVHNGNKGQKPASDEFNLIQAWLELLTEQGVPVKLCVAC 81 (126)
T ss_pred CCccHHHHHHHHHHHHHHHc---CCeEEEEEEeeccccccccCCCCcccccchHHHHHHHHHHcCCcEeeeHHH
Confidence 57888899999999999986 2566777766665442 123 34557788889999998875443
No 170
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=35.90 E-value=1.1e+02 Score=31.28 Aligned_cols=78 Identities=21% Similarity=0.362 Sum_probs=54.9
Q ss_pred ccccCcccHHHHHHHH--HHHhhhcCCCCCCeEEEEEecCCCCC---ChhHHH----HHHHHHHhCCceEEEEEeCCCCC
Q 016164 79 LEIGGELNLAAGIQVA--QLALKHRQNKKQQQRIIVFVGSPIKH---EKKVLE----MIGRKLKKNSVALDIVNFGEDDE 149 (394)
Q Consensus 79 l~~~G~~sL~~gL~iA--~lALkhr~~k~~~~RIVlFvgSp~~~---d~~~l~----~~akkLKknnI~VdiI~fG~e~~ 149 (394)
+.+.|.++=.+.-..| +.++||+. +..++|+-||||++... .++..+ -+.|.|.+.++++ +|+|.-...
T Consensus 132 lpi~Gs~h~Vt~~~lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~-lisfSRRTp 209 (329)
T COG3660 132 LPINGSPHNVTSQRLAALREAFKHLL-PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSF-LISFSRRTP 209 (329)
T ss_pred eeccCCCCcccHHHhhhhHHHHHhhC-CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceE-EEEeecCCc
Confidence 3567877777776666 67788884 78999999999999862 233333 3456677788886 568887663
Q ss_pred CcHHHHHHHHHH
Q 016164 150 GNTEKLEALLAA 161 (394)
Q Consensus 150 ~n~~~l~~~~~~ 161 (394)
+.++.++.+
T Consensus 210 ---~~~~s~l~~ 218 (329)
T COG3660 210 ---DTVKSILKN 218 (329)
T ss_pred ---HHHHHHHHh
Confidence 566666644
No 171
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.50 E-value=3.6e+02 Score=27.17 Aligned_cols=91 Identities=11% Similarity=0.151 Sum_probs=54.6
Q ss_pred HHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--c
Q 016164 91 IQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--S 168 (394)
Q Consensus 91 L~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S 168 (394)
|.--...||.+.. .+-+++++.-++...+..-.....|.+++-||.+..+-|.+.. .. +-|.+.++.+|.+++ .
T Consensus 19 lk~~i~~l~~~~~--~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-s~-~el~~~I~~lN~D~~V~G 94 (284)
T PRK14177 19 IRETIEERKTKNK--RIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQT-TT-EELLGVIDKLNLDPNVDG 94 (284)
T ss_pred HHHHHHHHHhcCC--CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CH-HHHHHHHHHHhCCCCCCe
Confidence 3333444555421 1234544444444444555667799999999999999998876 33 445566678987664 3
Q ss_pred EEEEcCCCCchhhhhhh
Q 016164 169 HLVHVPPGPNALSDVLL 185 (394)
Q Consensus 169 ~~v~vp~g~~lLsD~l~ 185 (394)
-+|-.|--.++-...++
T Consensus 95 IlvqlPLp~~i~~~~i~ 111 (284)
T PRK14177 95 ILLQHPVPSQIDERAAF 111 (284)
T ss_pred EEEcCCCCCCCCHHHHH
Confidence 45555544454444444
No 172
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=35.49 E-value=63 Score=26.86 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 125 LEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 125 l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
|......|++.||++-+|++|... -++.|++.+.. ... +.+.|.. .|+..+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~-----~~~~f~~~~~~-p~~--ly~D~~~-~lY~~l 52 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPE-----GIEKFCELTGF-PFP--LYVDPER-KLYKAL 52 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHH-----HHHHHHhccCC-CCc--EEEeCcH-HHHHHh
Confidence 445677889999999999998875 48999976532 222 4444443 466666
No 173
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=34.88 E-value=82 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 122 KKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 122 ~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
...+..+++.|++.|+.|++|.++.+.
T Consensus 10 ~~~~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 10 STFIYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 346789999999999999999996553
No 174
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.61 E-value=1e+02 Score=23.37 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=32.3
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
++++|.| .+...+.++.+.+|+.+|.+.+-+.=++. +-.=.++.|++.+
T Consensus 2 ~~ll~~g----~~~~el~~~l~~~r~~~~~~~~kAvlT~t-N~~Wt~~~L~~El 50 (58)
T PF12646_consen 2 EFLLFSG----FSGEELDKFLDALRKAGIPIPLKAVLTPT-NINWTLKDLLEEL 50 (58)
T ss_pred CEEEECC----CCHHHHHHHHHHHHHcCCCcceEEEECCC-cccCcHHHHHHHH
Confidence 4566622 25778999999999999977666666665 3333455555443
No 175
>PF13362 Toprim_3: Toprim domain
Probab=34.17 E-value=1.2e+02 Score=24.55 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=32.3
Q ss_pred CCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 105 KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 105 ~~~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
...++|||+.+-+... ......++++++++.++.+.++--+.
T Consensus 39 ~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p~~ 81 (96)
T PF13362_consen 39 EPGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEPGP 81 (96)
T ss_pred CCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 3677888887765542 46678899999999999999997743
No 176
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.21 E-value=5.4e+02 Score=26.18 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC-
Q 016164 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS- 167 (394)
Q Consensus 89 ~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~- 167 (394)
.-|.-....||++ + .+-.+.++.-++...+..-.....|.+++-||.+..+-|.+.. ...+ +.+.++++|.++.
T Consensus 18 ~~lk~~i~~l~~~-g--~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~~~-l~~~I~~lN~D~~V 92 (301)
T PRK14194 18 AQVREDVRTLKAA-G--IEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADT-SQAR-LLALIAELNADPSV 92 (301)
T ss_pred HHHHHHHHHHHhC-C--CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHcCCCCC
Confidence 3344444556553 1 2334444444443444555567788999999999999999887 4444 4466678887654
Q ss_pred -cEEEEcCCCCchhhhhhhc
Q 016164 168 -SHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 168 -S~~v~vp~g~~lLsD~l~s 186 (394)
.-+|-.|--+++-.+.++.
T Consensus 93 ~GIlvqlPLP~~i~~~~i~~ 112 (301)
T PRK14194 93 NGILLQLPLPAHIDEARVLQ 112 (301)
T ss_pred CeEEEeCCCCCCCCHHHHHh
Confidence 3455555433544444443
No 177
>PRK06756 flavodoxin; Provisional
Probab=33.08 E-value=70 Score=27.84 Aligned_cols=40 Identities=5% Similarity=0.300 Sum_probs=31.0
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
++|+|+.+|....++.-...+++.|++.++.|+++.+...
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDS 41 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc
Confidence 3677777887666676677888999999999999887543
No 178
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=31.83 E-value=2.2e+02 Score=25.57 Aligned_cols=38 Identities=21% Similarity=0.458 Sum_probs=24.6
Q ss_pred EEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 109 RIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 109 RIVlFvgSp~~~--d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+|+++.|||... +..-+..+++.++..+..+.+|.+..
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~ 40 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRD 40 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 467778888653 23333445666777788888887754
No 179
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=31.76 E-value=1.1e+02 Score=23.97 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=32.0
Q ss_pred hcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 100 HRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 100 hr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
.|+.+.....+++|+......+..++.++.+.|++.-..+.++|
T Consensus 34 s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~~~~~lG 77 (80)
T cd04905 34 SRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTEFVKVLG 77 (80)
T ss_pred EEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCeEEEee
Confidence 45554455667878766655457888899999999888777776
No 180
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=31.60 E-value=2.2e+02 Score=26.88 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=45.4
Q ss_pred cCccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 77 HGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 77 ~~l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
..+-+.|...-..+-++....+.-. +.+..+.|+|++.||... -..-..+...++.....|.+++.|-..
T Consensus 36 r~I~l~g~I~~~~~~~i~~~L~~l~-~~~~~~~I~l~INSpGG~-v~~g~~I~d~i~~~~~~v~t~~~G~aa 105 (207)
T PRK12553 36 RIIFLGGQVDDASANDVMAQLLVLE-SIDPDRDITLYINSPGGS-VTAGDAIYDTIQFIRPDVQTVCTGQAA 105 (207)
T ss_pred eEEEEcceECHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCCc-HHHHHHHHHHHHhcCCCcEEEEEeehh
Confidence 4467788877766666654444332 344578899999999864 344445566666666777777777544
No 181
>PRK08105 flavodoxin; Provisional
Probab=31.45 E-value=57 Score=29.08 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=31.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+|.||.||-....+.-...+++.|++.++.|.++.+..
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~ 40 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPE 40 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhh
Confidence 67888899877777777889999999999999887643
No 182
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=31.41 E-value=15 Score=35.41 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=39.6
Q ss_pred CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCc---HHHHHHHHHHhcCCCCcEEEEcCCCCch
Q 016164 103 NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGN---TEKLEALLAAVNNNDSSHLVHVPPGPNA 179 (394)
Q Consensus 103 ~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n---~~~l~~~~~~vn~~~~S~~v~vp~g~~l 179 (394)
-+.|++|||+| -..+-.-++.|++.|..|.-|-+.... .. .+.|.++++.. .-.+++++.|+...
T Consensus 37 ~~~HkqKl~l~--------~saMRhfa~~L~~~G~~V~Y~~~~~~~-~~~s~~~~L~~~~~~~---~~~~~~~~~P~d~~ 104 (224)
T PF04244_consen 37 VPHHKQKLVLF--------FSAMRHFADELRAKGFRVHYIELDDPE-NTQSFEDALARALKQH---GIDRLHVMEPGDYR 104 (224)
T ss_dssp S---HHHHHHH--------HHHHHHHHHHHHHTT--EEEE-TT-TT---SSHHHHHHHHHHHH-------EEEE--S-HH
T ss_pred CcccHHHHHHH--------HHHHHHHHHHHHhCCCEEEEEeCCCcc-ccccHHHHHHHHHHHc---CCCEEEEECCCCHH
Confidence 35577777766 344667799999999999999999865 22 34555555444 56788888888766
Q ss_pred hhhhhhc
Q 016164 180 LSDVLLS 186 (394)
Q Consensus 180 LsD~l~s 186 (394)
|...|-+
T Consensus 105 l~~~l~~ 111 (224)
T PF04244_consen 105 LEQRLES 111 (224)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666644
No 183
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=31.35 E-value=5.5e+02 Score=25.76 Aligned_cols=95 Identities=8% Similarity=0.119 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHh-----------cCccccCcccHHHHHHH
Q 016164 25 RFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACM-----------HGLEIGGELNLAAGIQV 93 (394)
Q Consensus 25 Rl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL-----------~~l~~~G~~sL~~gL~i 93 (394)
++....+.+...+..+.+++|....=||..-++. |.+...++..+ +-+....+.-...|+..
T Consensus 84 ~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgS-------tD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~ 156 (333)
T PTZ00260 84 RLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGS-------KDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRI 156 (333)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCC-------CCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHH
Confidence 5665566555555666667776666666665543 22333333332 11222222233445544
Q ss_pred HHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHh
Q 016164 94 AQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKK 134 (394)
Q Consensus 94 A~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKk 134 (394)
+.. + .+..+|+|++++...++.++.++.+.+.+
T Consensus 157 Gi~---~-----a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 157 GML---A-----SRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred HHH---H-----ccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 432 2 22368999999999999999999888875
No 184
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=31.20 E-value=1.6e+02 Score=27.25 Aligned_cols=109 Identities=21% Similarity=0.194 Sum_probs=62.6
Q ss_pred EEEEecCCccEEEECCCCCHHHHHHHhcCccccCc-ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHH
Q 016164 50 GVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE-LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMI 128 (394)
Q Consensus 50 GLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~-~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~ 128 (394)
|||..+|.+ +.+-|+|.+.-|- -+.+.|. +=|..-|... .. ..-++||+++... ....+...
T Consensus 2 avIla~G~G-tRl~plt~~~pK~-----ll~i~g~~pli~~~l~~l----~~----~g~~~ii~V~~~~---~~~~i~~~ 64 (248)
T PF00483_consen 2 AVILAGGKG-TRLRPLTDTIPKP-----LLPIGGKYPLIDYVLENL----AN----AGIKEIIVVVNGY---KEEQIEEH 64 (248)
T ss_dssp EEEEEESCC-GGGTTTTTTSSGG-----GSEETTEEEHHHHHHHHH----HH----TTCSEEEEEEETT---THHHHHHH
T ss_pred EEEECCCCC-ccCchhhhccccc-----cceecCCCcchhhhhhhh----cc----cCCceEEEEEeec---cccccccc
Confidence 577777875 7788888765441 2455676 6554444333 22 2455644443333 35667777
Q ss_pred HHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCC-CcEEEEcCCC
Q 016164 129 GRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND-SSHLVHVPPG 176 (394)
Q Consensus 129 akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~-~S~~v~vp~g 176 (394)
++...+.++.|.+|--.... ....-+......+.... ...+++++.+
T Consensus 65 ~~~~~~~~~~i~~i~~~~~~-Gta~al~~a~~~i~~~~~~~~~lv~~gD 112 (248)
T PF00483_consen 65 LGSGYKFGVKIEYIVQPEPL-GTAGALLQALDFIEEEDDDEDFLVLNGD 112 (248)
T ss_dssp HTTSGGGTEEEEEEEESSSS-CHHHHHHHTHHHHTTSEE-SEEEEETTE
T ss_pred ccccccccccceeeeccccc-chhHHHHHHHHHhhhccccceEEEEecc
Confidence 77777778888888766665 34444555555554322 2235555543
No 185
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=31.16 E-value=97 Score=28.86 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=38.7
Q ss_pred eEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCC-------CcHHHHHHHHHHhcCCCCcEEEEcCC
Q 016164 108 QRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDE-------GNTEKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 108 ~RIVlFvgSp~~~--d~~~l~~~akkLKknnI~VdiI~fG~e~~-------~n~~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
++|++|.|||... +..-+..+++.+++.++.|.+|.+..-.. ...+-++.+.+++..-| .+|.+-|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD--~iIi~tP 75 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQAD--GLIVATP 75 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCC--EEEEECC
Confidence 3688888888753 33344556677777888888887764210 01235566666665322 4554444
No 186
>PRK10565 putative carbohydrate kinase; Provisional
Probab=30.86 E-value=1.7e+02 Score=31.50 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=29.9
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
..||+||.| +.+. .+|=+-+|+.|+..++.|.|+-++...
T Consensus 60 ~~~v~vl~G-~GNN-GGDG~v~AR~L~~~G~~V~v~~~~~~~ 99 (508)
T PRK10565 60 ARHWLVLCG-HGNN-GGDGYVVARLAQAAGIDVTLLAQESDK 99 (508)
T ss_pred CCeEEEEEc-CCCc-hHHHHHHHHHHHHCCCceEEEEECCcc
Confidence 456665544 4433 566799999999999999999998653
No 187
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=30.76 E-value=2.9e+02 Score=28.29 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=37.8
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (394)
....+|+|+|..... ....+.++++++++.++++-++|-|... -.+.++.+++.
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~--~~~~~~~~~~~ 348 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPE--YEEALRELAAR 348 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHH--HHHHHHHHHHh
Confidence 456778888877654 5667889999999888888888777432 23456666554
No 188
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=30.60 E-value=1.4e+02 Score=30.49 Aligned_cols=111 Identities=13% Similarity=0.202 Sum_probs=64.1
Q ss_pred EEEEEecCCccEEEECCCCCHHHHHHHhcCcc--ccCcccHHHHHHHHHHHhhhcCC--CCCCeEEEEEecCCCCCChhH
Q 016164 49 VGVMTMAGKGVRVLVTPTSDLGKILACMHGLE--IGGELNLAAGIQVAQLALKHRQN--KKQQQRIIVFVGSPIKHEKKV 124 (394)
Q Consensus 49 VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~--~~G~~sL~~gL~iA~lALkhr~~--k~~~~RIVlFvgSp~~~d~~~ 124 (394)
.-+|+++|+-|.-+ +-..+.+++..+++.. .-=.++ +.+|. .+|+..|. |..+..+-..++.+... ..+
T Consensus 130 ~d~VvlsGSlP~g~--~~d~y~~li~~~~~~g~~vilD~S-g~~L~---~~L~~~P~lIKPN~~EL~~~~g~~~~~-~~d 202 (310)
T COG1105 130 DDIVVLSGSLPPGV--PPDAYAELIRILRQQGAKVILDTS-GEALL---AALEAKPWLIKPNREELEALFGRELTT-LED 202 (310)
T ss_pred CCEEEEeCCCCCCC--CHHHHHHHHHHHHhcCCeEEEECC-hHHHH---HHHccCCcEEecCHHHHHHHhCCCCCC-hHH
Confidence 34588888743211 2235666776666531 111111 22232 22332221 22333334445777766 448
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCC
Q 016164 125 LEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (394)
Q Consensus 125 l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~ 177 (394)
+.+.+++|...+|..-||++|...- | .-.+++++++.+|+.+
T Consensus 203 ~i~~a~~l~~~g~~~ViVSlG~~Ga--------l---~~~~~~~~~a~~p~~~ 244 (310)
T COG1105 203 VIKAARELLAEGIENVIVSLGADGA--------L---LVTAEGVYFASPPKVQ 244 (310)
T ss_pred HHHHHHHHHHCCCCEEEEEecCccc--------E---EEccCCeEEEeCCCcc
Confidence 8889999999999999999999872 1 1234678888877754
No 189
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=30.44 E-value=5.7e+02 Score=25.97 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=29.8
Q ss_pred EEEEEecCCCCC-ChhHHHHHHHHHHhCC--ceEEEEEeCCCCCCcHHHHHHHHHH
Q 016164 109 RIIVFVGSPIKH-EKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEALLAA 161 (394)
Q Consensus 109 RIVlFvgSp~~~-d~~~l~~~akkLKknn--I~VdiI~fG~e~~~n~~~l~~~~~~ 161 (394)
..|+++|..... .-..+.++++++++.+ +.+..+.+|... ..+.++.+++.
T Consensus 231 ~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~~ 284 (407)
T cd04946 231 LRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAES 284 (407)
T ss_pred EEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHHh
Confidence 345555555443 4566778888887764 455555555533 23467777653
No 190
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.34 E-value=5.4e+02 Score=25.97 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=48.7
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~--~v~vp~g~~lLsD~l~s 186 (394)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+++ ..++++|.+.+-| +|-.|--+++-.+.+++
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~ 111 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADT-SQAELL-ALIARLNADPAIHGILVQLPLPKHLDSEAVIQ 111 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHh
Confidence 4444444444444555667799999999999999999887 454444 5677898766544 44445434543344443
No 191
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=30.34 E-value=1.4e+02 Score=24.25 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=40.3
Q ss_pred cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC----ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH----EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~----d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
.+.|...+.++=.+-...+.... +...+. |++=.+.+.. .-+.+..+.+++++.|+.+.++|+-...
T Consensus 15 ~l~G~L~~~~a~~~~~~l~~~~~-~~~~~~-vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v 85 (109)
T cd07041 15 PLIGDLDDERAEQLQERLLEAIS-RRRARG-VIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEV 85 (109)
T ss_pred eeeeeECHHHHHHHHHHHHHHHH-HcCCCE-EEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 45677777776555433322221 113333 3333344432 3456788999999999999999977554
No 192
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=30.26 E-value=1.4e+02 Score=23.15 Aligned_cols=35 Identities=9% Similarity=0.178 Sum_probs=28.3
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 016164 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 145 (394)
Q Consensus 111 VlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG 145 (394)
|-++|.....+++-+.++...|.+.+|+|+.|+-+
T Consensus 4 Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s 38 (75)
T cd04912 4 LNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTS 38 (75)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcC
Confidence 44556667777888999999999999999998743
No 193
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=30.25 E-value=2.1e+02 Score=28.03 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC
Q 016164 88 AAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS 167 (394)
Q Consensus 88 ~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~ 167 (394)
.+|..+....|++.. ..+.| |.|+|+. ++.+.+++++|++.- .+.|+|+=..- -+.+-.+++++.+|. .+
T Consensus 88 v~G~dl~~~ll~~~~--~~~~~-v~llG~~----~~v~~~a~~~l~~~y-~l~i~g~~~Gy-f~~~e~~~i~~~I~~-s~ 157 (243)
T PRK03692 88 VAGADLWEALMARAG--KEGTP-VFLVGGK----PEVLAQTEAKLRTQW-NVNIVGSQDGY-FTPEQRQALFERIHA-SG 157 (243)
T ss_pred eChHHHHHHHHHHHH--hcCCe-EEEECCC----HHHHHHHHHHHHHHh-CCEEEEEeCCC-CCHHHHHHHHHHHHh-cC
Confidence 346666666665532 13355 4555665 778899999998875 77888764433 233445567777763 45
Q ss_pred cEEEEcCCC
Q 016164 168 SHLVHVPPG 176 (394)
Q Consensus 168 S~~v~vp~g 176 (394)
.+++.|-=|
T Consensus 158 ~dil~VglG 166 (243)
T PRK03692 158 AKIVTVAMG 166 (243)
T ss_pred CCEEEEECC
Confidence 677777555
No 194
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=30.22 E-value=1.2e+02 Score=24.48 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=41.0
Q ss_pred cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC----ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH----EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~----d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
++.|...+.++=.+-...+..... ...+.|++=.|.++. .-+-|..+.+++++.|+.+.+++.....
T Consensus 13 ~~~G~l~f~~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v 83 (100)
T cd06844 13 RLEGELDHHSVEQFKEELLHNITN--VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISPAV 83 (100)
T ss_pred EEEEEecHhhHHHHHHHHHHHHHh--CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCCHHH
Confidence 456666666665554433322211 223445554555542 3567889999999999999998876543
No 195
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=29.99 E-value=58 Score=29.34 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=38.1
Q ss_pred EEEEecCCCCCC-hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 110 IIVFVGSPIKHE-KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 110 IVlFvgSp~~~d-~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
-||++||+.... -.....+++.+++.+++|--|+||-.. ++.+|-..+
T Consensus 45 ~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~-----la~~~G~~v 93 (192)
T PF00117_consen 45 GIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQI-----LAHALGGKV 93 (192)
T ss_dssp EEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHH-----HHHHTTHEE
T ss_pred EEEECCcCCccccccccccccccccccceEEEEEeehhhh-----hHHhcCCcc
Confidence 366779998864 688889999999999999999999766 666654443
No 196
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=29.62 E-value=23 Score=37.46 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=14.9
Q ss_pred CCChHHHHHHHHhccccCCC
Q 016164 320 AEDDPELALALQLSMQDGTK 339 (394)
Q Consensus 320 ~~e~~~ia~A~~ms~~~~~~ 339 (394)
-.|||+|++||+||+.+.+.
T Consensus 163 k~EeEdiaKAi~lSL~E~~~ 182 (462)
T KOG2199|consen 163 KQEEEDIAKAIELSLKEQEK 182 (462)
T ss_pred cccHHHHHHHHHhhHHHHhh
Confidence 35788888888888876543
No 197
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.30 E-value=6e+02 Score=25.57 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=49.1
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--cEEEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S~~v~vp~g~~lLsD~l~s 186 (394)
+++++.-++...+..-.....|.+++-||.+..+-|.+.. ...++ ...++.+|.+.. .-+|-.|--+++-.+.+++
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el-~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~ 109 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEAT-TQADL-LAKVAELNHDPDVDAILVQLPLPAGLDEQAVID 109 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHH-HHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4555554554444555667789999999999999999887 44444 455678887654 3455555444544444443
No 198
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=29.29 E-value=1.3e+02 Score=26.92 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=34.9
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
-|.|+|+. ....++..+++.+|+.++++.+.. | . ...++.+.++..+
T Consensus 64 gVt~SGGE--l~~~~l~~ll~~lk~~Gl~i~l~T-g--~-~~~~~~~~il~~i 110 (147)
T TIGR02826 64 CVLFLGGE--WNREALLSLLKIFKEKGLKTCLYT-G--L-EPKDIPLELVQHL 110 (147)
T ss_pred EEEEechh--cCHHHHHHHHHHHHHCCCCEEEEC-C--C-CCHHHHHHHHHhC
Confidence 59999999 567789999999999999887765 3 1 2334666666555
No 199
>PRK05569 flavodoxin; Provisional
Probab=29.26 E-value=1e+02 Score=26.43 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=29.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
+|+|+.+|+...+..-...+++.+++.++.|+++.+....
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~ 42 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK 42 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCC
Confidence 5777778885555666677788888889999888876543
No 200
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.16 E-value=4.9e+02 Score=26.21 Aligned_cols=91 Identities=23% Similarity=0.250 Sum_probs=53.3
Q ss_pred HHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE-
Q 016164 91 IQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH- 169 (394)
Q Consensus 91 L~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~- 169 (394)
|......|+.+ . .+-++.++.-+....+..-.....|.+++-||.+.++-|.+.. ...+++ +.++++|.+..-|
T Consensus 19 ~~~~v~~l~~~-g--~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~~l~-~~I~~lN~d~~V~G 93 (286)
T PRK14175 19 LQDQVEALKEK-G--FTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETA-TEEEVL-NELNRLNNDDSVSG 93 (286)
T ss_pred HHHHHHHHHhc-C--CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCE
Confidence 33334445543 2 2224444444443344445567789999999999999999887 444444 5568898766544
Q ss_pred -EEEcCCCCchhhhhhhc
Q 016164 170 -LVHVPPGPNALSDVLLS 186 (394)
Q Consensus 170 -~v~vp~g~~lLsD~l~s 186 (394)
+|-.|--+++-...+++
T Consensus 94 Iivq~Plp~~i~~~~i~~ 111 (286)
T PRK14175 94 ILVQVPLPKQVSEQKILE 111 (286)
T ss_pred EEEeCCCCCCCCHHHHHh
Confidence 44445434544444443
No 201
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=28.98 E-value=1.6e+02 Score=31.57 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=36.0
Q ss_pred EEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 109 RIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 109 RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
..|+|+|..... ....+.++.+++++. ++.+.++|-|.+. +.|+.+++..+
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~----~~l~~~i~~~~ 373 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEK----QKLQKIINENQ 373 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhH----HHHHHHHHHcC
Confidence 457788876544 556677777777764 6788888877654 47888887653
No 202
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=28.97 E-value=2.2e+02 Score=27.02 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=27.0
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
...|+|+|..... +...+.++.+++++ ++++.+||-|...
T Consensus 193 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~-~~~l~ivG~~~~~ 233 (363)
T cd04955 193 GRYYLLVGRIVPENNIDDLIEAFSKSNS-GKKLVIVGNADHN 233 (363)
T ss_pred CcEEEEEecccccCCHHHHHHHHHhhcc-CceEEEEcCCCCc
Confidence 3457788876543 45566666666655 7899999988544
No 203
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=28.86 E-value=3.1e+02 Score=25.60 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=39.6
Q ss_pred CccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 78 GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 78 ~l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
-+-++|..+-..+-++....+.-. .....+.|++++.||... -..-..+...|+..+..|.+|++|-..
T Consensus 28 iI~l~g~I~~~~~~~ii~~L~~l~-~~~~~~~i~l~InSpGG~-v~~g~~I~d~l~~~~~~v~t~~~G~Aa 96 (191)
T TIGR00493 28 IIFLSGEVNDSVANLIVAQLLFLE-AEDPEKDIYLYINSPGGS-ITAGLAIYDTMQFIKPDVSTICIGQAA 96 (191)
T ss_pred EEEEccEEChHHHHHHHHHHHHhh-ccCCCCCEEEEEECCCCC-HHHHHHHHHHHHhcCCCEEEEEEEeec
Confidence 356677665544444443333221 234557799999999764 333444455555555667777776654
No 204
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.81 E-value=6.2e+02 Score=25.55 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=47.9
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~--~v~vp~g~~lLsD~l~s 186 (394)
.+.++.-++...+..-.....|.+++-||.+.++-|.+.. .. +-+...++++|.+..-| +|-.|--+++-...+++
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~-~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~ 110 (286)
T PRK14184 33 GLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADT-TQ-EELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLE 110 (286)
T ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CH-HHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHh
Confidence 4444444443344445557789999999999999999877 34 44556677998765444 44445434544444443
No 205
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=28.55 E-value=36 Score=26.85 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=16.8
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
.++||++.+.+.. ......++.++|+..+|+|+.|.
T Consensus 46 ~~~Vii~~D~D~~-G~~~a~~i~~~l~~~gi~v~~v~ 81 (81)
T PF13662_consen 46 VKEVIIAFDNDKA-GEKAAQKIAKKLLPLGIRVTRVA 81 (81)
T ss_dssp -SEEEEEEESSHH-HHHHHHHHHHHHG----------
T ss_pred CceEEEEeCcCHH-HHHHHHHHHHHHHhhccccccCC
Confidence 5677777666642 24455678888999999998863
No 206
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=28.54 E-value=2.5e+02 Score=30.72 Aligned_cols=135 Identities=17% Similarity=0.288 Sum_probs=66.8
Q ss_pred EEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeE-EEEE---ecCCccEEEE--CCCCCHHHHHHHhcCc
Q 016164 6 TLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTV-GVMT---MAGKGVRVLV--TPTSDLGKILACMHGL 79 (394)
Q Consensus 6 ~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~V-GLVt---mag~~a~vLv--tlT~D~~kilsaL~~l 79 (394)
|-+|||||.|||-.-+ +.+..++-.+.+.+-+-+-.+-| |+-| ++|..-+.+. --+..++++..-.|.+
T Consensus 416 VtlviDnSGSMrGRpI-----tvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhii 490 (620)
T COG4547 416 VTLVIDNSGSMRGRPI-----TVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHII 490 (620)
T ss_pred heeeeccCCCcCCcce-----ehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHH
Confidence 5689999999997533 34555555566655445444433 5555 3333222221 1223444433333322
Q ss_pred ---------------c-------ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCCC-----Ch-----hHHH
Q 016164 80 ---------------E-------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKH-----EK-----KVLE 126 (394)
Q Consensus 80 ---------------~-------~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~~-----d~-----~~l~ 126 (394)
. +.-+++ +.+|-.|+.-|-.|+. +++...+++ |.|... ++ .+|-
T Consensus 491 yksAdaPwrRARrnlGlmmreglLkeNiD-GEal~wah~rl~gRpE--qrkIlmmiSDGAPvddstlsvnpGnylerHLR 567 (620)
T COG4547 491 YKSADAPWRRARRNLGLMMREGLLKENID-GEALMWAHQRLIGRPE--QRKILMMISDGAPVDDSTLSVNPGNYLERHLR 567 (620)
T ss_pred HhccCCHHHHHHhhcchhhhcchhhccCC-hHHHHHHHHHHhcChh--hceEEEEecCCCcccccccccCCchHHHHHHH
Confidence 1 111233 4577778777777642 444334443 444432 23 3455
Q ss_pred HHHHHHHh-CCceEEEEEeCCCC
Q 016164 127 MIGRKLKK-NSVALDIVNFGEDD 148 (394)
Q Consensus 127 ~~akkLKk-nnI~VdiI~fG~e~ 148 (394)
.+++.... .-|-+-.||+|..+
T Consensus 568 aVieeIEtrSpveLlAIGighDv 590 (620)
T COG4547 568 AVIEEIETRSPVELLAIGIGHDV 590 (620)
T ss_pred HHHHHHhcCCchhheeeeccccc
Confidence 55555433 34555556666655
No 207
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=28.34 E-value=2.1e+02 Score=28.24 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=34.9
Q ss_pred HHHhhhcCCCCCCeEEEEEecCCCCCChhH-HHHHHHHHHhCCceEEEEEeCCC
Q 016164 95 QLALKHRQNKKQQQRIIVFVGSPIKHEKKV-LEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 95 ~lALkhr~~k~~~~RIVlFvgSp~~~d~~~-l~~~akkLKknnI~VdiI~fG~e 147 (394)
...|+.......+.++|.|+|.+... +-. +..++..+++.|.+|-+|++-..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~G-Kttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAG-KSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCC-HHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 33444443344567778888776554 444 56778889999999999987643
No 208
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=28.33 E-value=2.8e+02 Score=23.76 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC-Ch--------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 016164 87 LAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-EK--------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 157 (394)
Q Consensus 87 L~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~-d~--------~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~ 157 (394)
..++..++....++ +..+-+++-|++.+... .+ +++..+.+.+++++|.-=+|.+-... .+.+++
T Consensus 86 ~~~~~~~~~~l~~~---~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~---~~~i~~ 159 (175)
T PF13727_consen 86 GGAGRELAEALRSN---PRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSE---EEQIKR 159 (175)
T ss_dssp SHHHHHHHHHHHH-----SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS----HHHHHH
T ss_pred echHHHHHHHHHhh---hhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccC---HHHHHH
Confidence 34555555544333 44667788888655542 22 46677888888999987777776544 468888
Q ss_pred HHHHhcCCCCcEEEEcC
Q 016164 158 LLAAVNNNDSSHLVHVP 174 (394)
Q Consensus 158 ~~~~vn~~~~S~~v~vp 174 (394)
+++.... .+.++..||
T Consensus 160 ii~~~~~-~~v~v~~vP 175 (175)
T PF13727_consen 160 IIEELEN-HGVRVRVVP 175 (175)
T ss_dssp HHHHHHT-TT-EEEE--
T ss_pred HHHHHHh-CCCEEEEeC
Confidence 8888863 456666665
No 209
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=28.31 E-value=2.9e+02 Score=24.97 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=38.0
Q ss_pred ccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 79 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
+-+.|...-..+-++....+.-+ .....+.|+|++.||... ...-..+...|+..+..|.++..|-..
T Consensus 12 i~i~g~I~~~~~~~i~~~l~~~~-~~~~~~~i~l~inSpGG~-v~~~~~i~~~l~~~~~~v~t~~~g~aa 79 (171)
T cd07017 12 IFLGGPIDDEVANLIIAQLLYLE-SEDPKKPIYLYINSPGGS-VTAGLAIYDTMQYIKPPVSTICLGLAA 79 (171)
T ss_pred EEEcCEEcHHHHHHHHHHHHHHH-ccCCCCceEEEEECCCCC-HHHHHHHHHHHHhcCCCEEEEEEeEeh
Confidence 44566554444433332222211 233568899999999874 333445555566556777777766544
No 210
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=28.30 E-value=4.7e+02 Score=23.97 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=30.6
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHh--CCceEEEEEeCCCC
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKK--NSVALDIVNFGEDD 148 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKk--nnI~VdiI~fG~e~ 148 (394)
....+|+|+|..... ....+.++++.+++ .++.+.++|-|...
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~ 231 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE 231 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc
Confidence 345678888876543 56778889999886 45777777777655
No 211
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=27.94 E-value=2.5e+02 Score=27.73 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=37.0
Q ss_pred eEEEEEeCChhhhCCC----CCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc
Q 016164 5 ATLICIDNSEWMRNGD----YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG 58 (394)
Q Consensus 5 a~vIvIDnSesMrngD----~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~ 58 (394)
---|+|..|.+...++ +-|.++..-..-++.++.. ..+||||+=+|.-
T Consensus 5 ~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~------g~eV~iVvGGGni 56 (238)
T COG0528 5 YMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDL------GVEVAVVVGGGNI 56 (238)
T ss_pred eEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhc------CcEEEEEECCCHH
Confidence 3457889999999886 6788888887777777763 4589999877754
No 212
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=27.90 E-value=2.9e+02 Score=26.75 Aligned_cols=57 Identities=23% Similarity=0.125 Sum_probs=34.5
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCC--cHHHHHHHHHHhc
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEG--NTEKLEALLAAVN 163 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~--n~~~l~~~~~~vn 163 (394)
...+|+|+|..... +...+.++++++++. ++.+-+||=|..... ....++.+++..+
T Consensus 219 ~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~ 280 (398)
T cd03800 219 DKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELG 280 (398)
T ss_pred CCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcC
Confidence 35678888876543 677888999999875 466666664443210 0123566666553
No 213
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=27.76 E-value=6.6e+02 Score=25.53 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=38.9
Q ss_pred ceEEEEEeCChh--hhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc
Q 016164 4 EATLICIDNSEW--MRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG 58 (394)
Q Consensus 4 Ea~vIvIDnSes--MrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~ 58 (394)
.++++|+|.|++ ..-.|-..+|+.-.+...+.+|+.. -...+.|+.+.++.
T Consensus 209 ~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~----~~~~~piil~~NK~ 261 (342)
T smart00275 209 TAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR----WFANTSIILFLNKI 261 (342)
T ss_pred CEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc----cccCCcEEEEEecH
Confidence 589999999997 3455666799999998888888742 23457888888873
No 214
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=27.50 E-value=1.8e+02 Score=32.04 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 90 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 90 gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
|..+|...+++.+ +...++|+|| +++.+. .+|=+-+|+.|+..|..|.|+-.+.
T Consensus 119 G~avA~~I~~~~~-~~~~~~VlVl-cGpGNN-GGDGLVaAR~L~~~G~~V~V~~~~~ 172 (544)
T PLN02918 119 GLSVAASIAEVYK-PGEYSRVLAI-CGPGNN-GGDGLVAARHLHHFGYKPFVCYPKR 172 (544)
T ss_pred HHHHHHHHHHhcc-cccCCEEEEE-ECCCcC-HHHHHHHHHHHHHCCCceEEEEcCC
Confidence 4555555554432 2123566555 555443 6788889999999999999877553
No 215
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=27.38 E-value=1.1e+02 Score=25.88 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=34.5
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
..|.|+..+.. -....++++.|+++||.+.+|.+-.-.--..+.+..++.+.
T Consensus 10 ~di~iia~G~~---~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~ 61 (124)
T PF02780_consen 10 ADITIIAYGSM---VEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKT 61 (124)
T ss_dssp SSEEEEEETTH---HHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHH
T ss_pred CCEEEEeehHH---HHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHh
Confidence 44555544442 45678999999999999999998764333445555544433
No 216
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=26.99 E-value=1.4e+02 Score=28.20 Aligned_cols=51 Identities=14% Similarity=0.039 Sum_probs=35.2
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (394)
-|.|+|+.-...++-+..+++.+|+.|+++.+..=|.-. ...+.++.+...
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~-~~~~~~~~ll~~ 123 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR-RYDPVIDELLDV 123 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCC-cchHHHHHHHHh
Confidence 477888877777777789999999999987666555432 133566666543
No 217
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=26.98 E-value=1.9e+02 Score=24.85 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=7.6
Q ss_pred CceEEEEEeCCC
Q 016164 136 SVALDIVNFGED 147 (394)
Q Consensus 136 nI~VdiI~fG~e 147 (394)
+.++.||.||..
T Consensus 34 ~d~fnii~f~~~ 45 (155)
T PF13768_consen 34 GDRFNIIAFGSS 45 (155)
T ss_pred CCEEEEEEeCCE
Confidence 446667777664
No 218
>PRK05568 flavodoxin; Provisional
Probab=26.92 E-value=1.2e+02 Score=25.83 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=29.9
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
+++|+.+|....+..-...+++.+++.++.|.++.+....
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~ 42 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEAS 42 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4566667765556777778888899999999998876543
No 219
>PRK06703 flavodoxin; Provisional
Probab=26.86 E-value=97 Score=27.03 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=30.8
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
+++|+.+|....++.-...+++.|.+.++.|+++.+...
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 41 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM 41 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC
Confidence 577777887666677777888999999999999887653
No 220
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.67 E-value=2.9e+02 Score=29.33 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=69.6
Q ss_pred EEEEEeCChhhhCC---CCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC--HHHHHHHhcCcc
Q 016164 6 TLICIDNSEWMRNG---DYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD--LGKILACMHGLE 80 (394)
Q Consensus 6 ~vIvIDnSesMrng---D~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D--~~kilsaL~~l~ 80 (394)
.++++|+|.||... -+.--|-.|+..++ ...+-+-.+-.|.|+++- +-+|.|.| .++++.++.++.
T Consensus 430 ~~laldvs~sm~~rv~~s~ln~reaaa~m~l-------inlhnead~~~vaf~d~l--te~pftkd~kigqv~~~~nni~ 500 (598)
T KOG4465|consen 430 FCLALDVSASMNQRVLGSILNAREAAAAMCL-------INLHNEADSRCVAFCDEL--TECPFTKDMKIGQVLDAMNNID 500 (598)
T ss_pred EEEEEecchhhhhhhhccccchHHHHhhhhe-------eeeccccceeEEEecccc--ccCCCcccccHHHHHHHHhcCC
Confidence 57899999999643 22223333333222 345667778889999873 34667775 678999999998
Q ss_pred ccCc-ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHh-CCce
Q 016164 81 IGGE-LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVA 138 (394)
Q Consensus 81 ~~G~-~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKk-nnI~ 138 (394)
.+|. |.|.. --| . .+...--..|||.+-..-..+-++...+|+.++ -+|.
T Consensus 501 ~g~tdcglpm--~wa-----~-ennlk~dvfii~tdndt~ageihp~~aik~yrea~~i~ 552 (598)
T KOG4465|consen 501 AGGTDCGLPM--IWA-----Q-ENNLKADVFIIFTDNDTFAGEIHPAEAIKEYREAMDIH 552 (598)
T ss_pred CCCCccCCce--eeh-----h-hcCCCccEEEEEecCcccccccCHHHHHHHHHHhcCCC
Confidence 7763 54321 011 0 122234556777666554456666677776654 3444
No 221
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=26.55 E-value=6.8e+02 Score=25.29 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
..+|+|++. ...+...+.++.+++++..-.+.+|-.|... +..+.++++++..
T Consensus 233 ~~vil~~~~-~~~~~~~ll~A~~~l~~~~~~~~liivG~g~-~r~~~l~~~~~~~ 285 (425)
T PRK05749 233 RPVWIAAST-HEGEEELVLDAHRALLKQFPNLLLILVPRHP-ERFKEVEELLKKA 285 (425)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHHHHhCCCcEEEEcCCCh-hhHHHHHHHHHhC
Confidence 345666544 3334556678888776643334444445433 2224566666543
No 222
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.08 E-value=6.9e+02 Score=25.17 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=47.7
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--cEEEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S~~v~vp~g~~lLsD~l~s 186 (394)
++.++.-+....+..-.....|.+++-||.+.++-|.+.. ...+ |...++.+|.+.. .-+|-.|--+++-.+.+++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~e-l~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~ 111 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADI-TEEE-LLALIDRLNADPRINGILVQLPLPKHIDEKAVIE 111 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4444444443344455557789999999999999999887 4444 5566678987654 3455555434544444433
No 223
>PRK04155 chaperone protein HchA; Provisional
Probab=25.92 E-value=2.7e+02 Score=27.90 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=22.0
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 121 EKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 121 d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
.+.++..-...|++.|+.|+|++...
T Consensus 75 ~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 75 HPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45677788999999999999999843
No 224
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.84 E-value=7e+02 Score=25.14 Aligned_cols=77 Identities=14% Similarity=0.246 Sum_probs=48.2
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--cEEEEcCCCCchhhhhhh
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLL 185 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S~~v~vp~g~~lLsD~l~ 185 (394)
.+++++.-++...+..-.....|.+++-||.+..+-|.+.. ...+ +.+.++++|.+.. .-+|-.|--+++-...++
T Consensus 32 P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~e-l~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~ 109 (282)
T PRK14180 32 PKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHT-TESE-LLELIDQLNNDSSVHAILVQLPLPAHINKNNVI 109 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 34544444443444555567789999999999999999876 3444 4456689987654 345555544454333443
Q ss_pred c
Q 016164 186 S 186 (394)
Q Consensus 186 s 186 (394)
.
T Consensus 110 ~ 110 (282)
T PRK14180 110 Y 110 (282)
T ss_pred h
Confidence 3
No 225
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.65 E-value=1.4e+02 Score=22.32 Aligned_cols=32 Identities=13% Similarity=0.348 Sum_probs=24.5
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
+||.+. ..+.++.|.++.+.|.++||.|.-+.
T Consensus 2 ~ri~v~----v~d~pG~La~v~~~l~~~~inI~~i~ 33 (66)
T cd04908 2 KQLSVF----LENKPGRLAAVTEILSEAGINIRALS 33 (66)
T ss_pred EEEEEE----EcCCCChHHHHHHHHHHCCCCEEEEE
Confidence 456554 34568999999999999999885444
No 226
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.37 E-value=7.1e+02 Score=25.11 Aligned_cols=76 Identities=9% Similarity=0.208 Sum_probs=50.0
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--cEEEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S~~v~vp~g~~lLsD~l~s 186 (394)
.++++.-++...+..-.....|.+++-||.+..+-|.+.. ...+++ ..++++|.+.. .-+|-.|--+++-.+.++.
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~ 110 (284)
T PRK14170 33 GLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENV-TEEKLL-SVVEELNEDKTIHGILVQLPLPEHISEEKVID 110 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCeEEEecCCCCCCCHHHHHh
Confidence 4555555554444555667789999999999999999887 444455 56678987654 3455556444544444433
No 227
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=25.36 E-value=1.8e+02 Score=21.75 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=28.6
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
+|-.+|......++-+.++-+.|.++||+|.-++
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEE
Confidence 4667888888889999999999999999996554
No 228
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=25.23 E-value=2.5e+02 Score=22.71 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=38.3
Q ss_pred cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC----ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 80 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH----EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~----d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
.+.|...+.++=.+-....... ..... +.|++=.+..+. --..|..+.+++++.|+.+.++|.-...
T Consensus 13 ~l~G~L~f~~~~~~~~~l~~~~-~~~~~-~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v 83 (106)
T TIGR02886 13 RLSGELDHHTAERVRRKIDDAI-ERRPI-KHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSPAV 83 (106)
T ss_pred EEecccchhhHHHHHHHHHHHH-HhCCC-CEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 4556666665554443322211 11122 334444455542 2456778999999999999998865443
No 229
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=25.19 E-value=1.8e+02 Score=26.22 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=42.1
Q ss_pred ccccCcccHHHHHHHH--HHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 79 LEIGGELNLAAGIQVA--QLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 79 l~~~G~~sL~~gL~iA--~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
+.+.|..+-..+-.+. +..|.. ....++|.|++.||... -..-..+...++..++.|.+++.|-..
T Consensus 19 i~l~g~I~~~~~~~~~~~L~~l~~---~~~~~~i~i~INSpGG~-v~~g~~i~~~i~~~~~~v~t~~~G~aa 86 (182)
T PF00574_consen 19 IFLNGPIDEESANRLISQLLYLEN---EDKNKPINIYINSPGGD-VDAGLAIYDAIRSSKAPVTTVVLGLAA 86 (182)
T ss_dssp EEEESSBSHHHHHHHHHHHHHHHH---HTSSSEEEEEEEECEBC-HHHHHHHHHHHHHSSSEEEEEEEEEEE
T ss_pred EEECCccCHHHHHHHHHHHHHHhc---cCCCceEEEEEcCCCCc-cHHHHHHHHHHHhcCCCeEEEEeCccc
Confidence 3456655544443333 344533 33668899999888754 445566777777778888888887644
No 230
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=25.16 E-value=2.5e+02 Score=28.83 Aligned_cols=62 Identities=24% Similarity=0.237 Sum_probs=41.6
Q ss_pred cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChh--------------HH--------HHHHHHHHhCCceE
Q 016164 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKK--------------VL--------EMIGRKLKKNSVAL 139 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~--------------~l--------~~~akkLKknnI~V 139 (394)
+|-+++...|.+|+.+=++ .=+-.|-|-.|+.=.||+ .| ..+.++||++||.+
T Consensus 52 ~g~~~~~~~~~~akrak~~-----Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~p 126 (332)
T PF07745_consen 52 GGYNDLEDVIALAKRAKAA-----GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTP 126 (332)
T ss_dssp TTTTSHHHHHHHHHHHHHT-----T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred cccCCHHHHHHHHHHHHHC-----CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 6889999999999988433 233445666777633332 23 24558999999999
Q ss_pred EEEEeCCCC
Q 016164 140 DIVNFGEDD 148 (394)
Q Consensus 140 diI~fG~e~ 148 (394)
++|-+|-|.
T Consensus 127 d~VQVGNEi 135 (332)
T PF07745_consen 127 DMVQVGNEI 135 (332)
T ss_dssp SEEEESSSG
T ss_pred cEEEeCccc
Confidence 999999985
No 231
>PRK09004 FMN-binding protein MioC; Provisional
Probab=25.13 E-value=95 Score=27.56 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=29.2
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~f 144 (394)
+|+||.+|.....+.-...+++.++..++.|.++..
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 577777888777677778889999999999998754
No 232
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.11 E-value=7.2e+02 Score=25.10 Aligned_cols=76 Identities=9% Similarity=0.098 Sum_probs=49.8
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--cEEEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S~~v~vp~g~~lLsD~l~s 186 (394)
.+.++.-++...+..-.....|.+++-||.+..+-|.+.. ...++ .+.++++|.+.. .-+|-.|--+++-.+.+++
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~el-~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~ 117 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADT-TQEEL-LELIDSLNKRKDVHGILLQLPLPKHLDPQEAME 117 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHH-HHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 4444444444455666677899999999999999999887 44444 456689987654 4455556444544444443
No 233
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=25.08 E-value=3.8e+02 Score=25.23 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=42.7
Q ss_pred ccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 79 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
|-+.|...-..+-.+....+.- ......+.|+|++-||... -..-..+...++....+|.+|++|-..
T Consensus 26 I~i~g~I~~~~~~~i~~~L~~l-~~~~~~~~I~l~INSpGG~-v~ag~aI~d~i~~~~~~V~t~v~G~Aa 93 (197)
T PRK14512 26 IVIAGEINKDLSELFQEKILLL-EALDSKKPIFVYIDSEGGD-IDAGFAIFNMIRFVKPKVFTIGVGLVA 93 (197)
T ss_pred EEECCEEcHHHHHHHHHHHHHH-HhcCCCCCEEEEEECCCCC-HHHHHHHHHHHHhCCCCEEEEEEeeeH
Confidence 4667765555554444332221 1234678899999999764 444456666677777888888877655
No 234
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=25.08 E-value=1.7e+02 Score=25.40 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=51.2
Q ss_pred EEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 112 VFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 112 lFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
||++++....|.++..-+-.+. ..|.|.=-+||.-.+--.+..+++++.+-.-+.+|+.+-.-|
T Consensus 2 ivl~~~~~v~Ps~l~~~~~~~~-~~v~iKETCFG~~i~Ge~e~V~~~i~~iR~ld~~~IF~KdRG 65 (104)
T PF09875_consen 2 IVLSSEANVSPSDLAMKLYELS-LPVTIKETCFGAMIEGEEEEVDKVIEEIRKLDPNHIFVKDRG 65 (104)
T ss_pred EEeCCCCCcCHHHHHHHHHhcC-CCceeeecceeeEEECCHHHHHHHHHHHHhhCCCceEeecCC
Confidence 5667777678999988887774 469999999999775668899999999987777888776655
No 235
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=25.03 E-value=2.4e+02 Score=28.21 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=45.0
Q ss_pred EEEEecCCccEEEECCCCCHHHHHHHhcCc-----------cccCcc-cHH---HHHHHHHHHhhhcCCCCCCeEEEEEe
Q 016164 50 GVMTMAGKGVRVLVTPTSDLGKILACMHGL-----------EIGGEL-NLA---AGIQVAQLALKHRQNKKQQQRIIVFV 114 (394)
Q Consensus 50 GLVtmag~~a~vLvtlT~D~~kilsaL~~l-----------~~~G~~-sL~---~gL~iA~lALkhr~~k~~~~RIVlFv 114 (394)
-+|+++|-....+..-..++.++..++.++ .+.+.. .=. .-+-.|+..|++ ..+..+|.+.+
T Consensus 70 ViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~---~~p~l~vs~Tl 146 (294)
T cd06543 70 VIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQK---EYPDLKISFTL 146 (294)
T ss_pred EEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHH---HCCCcEEEEec
Confidence 456888865444444445666665555432 122221 101 112233334433 22334444333
Q ss_pred c-CCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 016164 115 G-SPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (394)
Q Consensus 115 g-Sp~~~d~~~l~~~akkLKknnI~VdiI~f 144 (394)
. .|.-.++ +=..+.+.++++||.|+.|++
T Consensus 147 p~~p~gl~~-~g~~~l~~a~~~Gv~~d~VNi 176 (294)
T cd06543 147 PVLPTGLTP-DGLNVLEAAAANGVDLDTVNI 176 (294)
T ss_pred CCCCCCCCh-hHHHHHHHHHHcCCCcceeee
Confidence 2 2222222 224677888899999999886
No 236
>PRK09271 flavodoxin; Provisional
Probab=24.97 E-value=1.3e+02 Score=26.84 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=28.7
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
++|+|+.+|-...+++-...+++.|+..++.|.+..+..
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~ 39 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDV 39 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEeccc
Confidence 366777788655567777788999999999887666543
No 237
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=24.97 E-value=4.8e+02 Score=27.65 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCC--C---ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016164 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK--H---EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~--~---d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (394)
.+|..-+.--+.+|||+. ++++.. |+|+.-.+. . ..--++.+-........+|-|||.-..-. +++.+=
T Consensus 115 gsfte~l~~lL~~L~~~~-~~t~~~-ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld----~lE~LE 188 (408)
T KOG2228|consen 115 GSFTENLSKLLEALKKGD-ETTSGK-VIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD----ILELLE 188 (408)
T ss_pred cccchhHHHHHHHHhcCC-CCCCce-EEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc----HHHHHH
Confidence 344555666678888863 333333 556653332 1 23345677777788899999999999883 888887
Q ss_pred HHhcCCCCcEEE-EcCCCCchhhhhh
Q 016164 160 AAVNNNDSSHLV-HVPPGPNALSDVL 184 (394)
Q Consensus 160 ~~vn~~~~S~~v-~vp~g~~lLsD~l 184 (394)
+.|.+ -.||-+ ..+|-- -|.|.+
T Consensus 189 KRVKS-RFshr~I~m~~~~-~l~~yv 212 (408)
T KOG2228|consen 189 KRVKS-RFSHRVIFMLPSL-PLGDYV 212 (408)
T ss_pred HHHHh-hcccceeeccCCC-ChHHHH
Confidence 78864 578884 444433 366655
No 238
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.95 E-value=7e+02 Score=25.22 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=48.8
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--cEEEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S~~v~vp~g~~lLsD~l~s 186 (394)
.++++.-++...+..-.....|.+++-||.+..+-|.+.. ...+ +...++.+|.+.. .-+|-.|--+++-...++.
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~e-l~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~ 110 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADT-TEEH-LLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTL 110 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4555544544444555667799999999999999999887 4444 4456688987654 3455555434543343433
No 239
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.95 E-value=7.3e+02 Score=25.09 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=47.3
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCc--EEEEcCCCCchhhhhhh
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSS--HLVHVPPGPNALSDVLL 185 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S--~~v~vp~g~~lLsD~l~ 185 (394)
.+.++.-++...+..-.....|.+++-||.+..+-|.+.. ... -|...++++|.+++- -+|-.|--.++-.+.++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~-~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~ 110 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTI-HTN-DLISKINELNLDNEISGIIVQLPLPSSIDKNKIL 110 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 3444444443444445557799999999999999998887 444 455667789876643 45555543354334443
No 240
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=24.83 E-value=83 Score=29.75 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=29.1
Q ss_pred EEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 111 IVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 111 VlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
|||.|||... +......+++++.+.+++|-=|+||-..
T Consensus 50 liisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Ql 88 (214)
T PRK07765 50 VLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQA 88 (214)
T ss_pred EEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHH
Confidence 6777888653 2334457899999999999999999765
No 241
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=24.82 E-value=2.8e+02 Score=28.55 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=45.0
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC-------CceEEEEEeCCCCCCcH---HHHHHHHHHhcCCCCcEEEEcCC
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-------SVALDIVNFGEDDEGNT---EKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn-------nI~VdiI~fG~e~~~n~---~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
...+|+|+|.-... ....+.+..+++++. ++++.|||=|... ++. +.|+.+++..+-.++=+|+--.+
T Consensus 236 ~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~-~~~~~~~~L~~~~~~l~l~~~V~f~g~v~ 314 (419)
T cd03806 236 RENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNE-DDEKRVEDLKLLAKELGLEDKVEFVVNAP 314 (419)
T ss_pred CCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCc-ccHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 34578888866543 455677777777763 5788888766443 333 45666666654333333332222
Q ss_pred CCchhhhhhhcCcc
Q 016164 176 GPNALSDVLLSTPI 189 (394)
Q Consensus 176 g~~lLsD~l~sspi 189 (394)
... +...+..+-+
T Consensus 315 ~~~-l~~~l~~adv 327 (419)
T cd03806 315 FEE-LLEELSTASI 327 (419)
T ss_pred HHH-HHHHHHhCeE
Confidence 222 4455555544
No 242
>PRK04460 nickel responsive regulator; Provisional
Probab=24.72 E-value=1.3e+02 Score=27.00 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=28.4
Q ss_pred hhCCCCCCcHHHHHHHHHHHHHHHhccCC-cCCeEEEEEe
Q 016164 16 MRNGDYAPSRFQAQTEAANLICGAKTQLN-PENTVGVMTM 54 (394)
Q Consensus 16 MrngD~~PsRl~Aq~~Av~~fv~~k~~~N-Pes~VGLVtm 54 (394)
+...-| |||=++-.++++.++.++.... +..-+|+|++
T Consensus 21 ~~~~gy-~sRSe~ird~ir~~l~e~~~~~~~~~~~Gvi~v 59 (137)
T PRK04460 21 IEEKGY-QNRSEAIRDLIRDFLVEHEWEEGDEEVAGTVTL 59 (137)
T ss_pred HHHcCC-CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEEE
Confidence 444455 9999999999999998755433 3555898887
No 243
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=24.72 E-value=2.5e+02 Score=22.57 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhCC---ceEEEEEeCCCC
Q 016164 123 KVLEMIGRKLKKNS---VALDIVNFGEDD 148 (394)
Q Consensus 123 ~~l~~~akkLKknn---I~VdiI~fG~e~ 148 (394)
.....++..+...+ ..|.|+-+|+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~v~v~~~g~gv 46 (122)
T PF02635_consen 18 KIALRLANAAAAMGDYGHDVVVFFHGDGV 46 (122)
T ss_dssp HHHHHHHHHHHHTTHTTSEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEEEchHH
Confidence 44445555555555 666666666544
No 244
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=24.61 E-value=1.3e+02 Score=27.70 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=30.3
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
++|+-|+|...+.=---+.+++++|+..|++|.+|-=--.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 4678888877665334567999999999999999965433
No 245
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.60 E-value=6.8e+02 Score=25.23 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=46.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~--~v~vp~g~~lLsD~l~s 186 (394)
.+.++.-+....+..-.....|.+++-||.+.++-|-+.. ...+++ +.++++|.++.-| +|-.|--+++-.+.++.
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-s~~el~-~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~ 112 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETT-SEAELL-ALIDELNADPTIDGILVQLPLPAHIDNVKVLE 112 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4433333333333445557789999999999999998776 344444 5567898766544 44445434544444443
No 246
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=24.58 E-value=2.2e+02 Score=29.35 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 124 VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 124 ~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
...+++++|++++|.|.||.+-.-.--..+.|.+.++++ .++++|..+
T Consensus 242 ~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t-----~~vvtvEE~ 289 (356)
T PLN02683 242 YALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKT-----NRLVTVEEG 289 (356)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhc-----CeEEEEeCC
Confidence 455777888888888888888875433445555555444 357777654
No 247
>PRK13981 NAD synthetase; Provisional
Probab=24.54 E-value=8.9e+02 Score=25.96 Aligned_cols=92 Identities=23% Similarity=0.172 Sum_probs=50.4
Q ss_pred CCCCC--cHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCcccHHHHHHHHHH
Q 016164 19 GDYAP--SRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQL 96 (394)
Q Consensus 19 gD~~P--sRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~~sL~~gL~iA~l 96 (394)
..+.| ++.....+++..+++.|++......| ||.+.|+. . .++. ..+|..
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-vvglSGGi-----------D--------------Sa~~--a~la~~ 302 (540)
T PRK13981 251 GPIAPPPEGEAEDYRALVLGLRDYVRKNGFPGV-VLGLSGGI-----------D--------------SALV--AAIAVD 302 (540)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCeE-EEECCCCH-----------H--------------HHHH--HHHHHH
Confidence 34544 56777788888888888877655444 44555441 1 1111 112223
Q ss_pred HhhhcCCCCCCeEEE-EEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 97 ALKHRQNKKQQQRII-VFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 97 ALkhr~~k~~~~RIV-lFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+|. +.+++ +++.+..+ .+.++..+-+.+++-||...+|.+..
T Consensus 303 a~g-------~~~v~~~~~p~~~~-~~~~~~~a~~~a~~lgi~~~~i~i~~ 345 (540)
T PRK13981 303 ALG-------AERVRAVMMPSRYT-SEESLDDAAALAKNLGVRYDIIPIEP 345 (540)
T ss_pred HhC-------cCcEEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEECHH
Confidence 332 12333 33343433 34555555666677799999888764
No 248
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.43 E-value=4.9e+02 Score=27.94 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE--eCCCC-CCcHHHHHHHHHHhcC
Q 016164 88 AAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN--FGEDD-EGNTEKLEALLAAVNN 164 (394)
Q Consensus 88 ~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~--fG~e~-~~n~~~l~~~~~~vn~ 164 (394)
.-|-+++..+|+|... .+-+ |.||+. .|+..+..+.++++-+.--+.||+ |.+.. -.|-...+........
T Consensus 91 ~LG~~~~~~aL~~~~~--~~~~-~~Fv~n---id~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~~~~~~~~ 164 (446)
T COG0166 91 DLGPRAVTEALRPYAP--NGPR-VHFVSN---VDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARKWLEKKEE 164 (446)
T ss_pred HHHHHHHHHHhhhhcc--CCCc-eEEecC---CCchhhhHHHhccCcccEEEEEEeCCCCcHHHHHHHHHHHHHHHhhhh
Confidence 3467788889988532 2233 557655 467778888888877778888888 55532 1233333333322211
Q ss_pred CCCcEEEEcCCCCchh
Q 016164 165 NDSSHLVHVPPGPNAL 180 (394)
Q Consensus 165 ~~~S~~v~vp~g~~lL 180 (394)
--..||+++......+
T Consensus 165 ~~~~~~v~~~~~~~~l 180 (446)
T COG0166 165 AAKKHFVATSTNGGAL 180 (446)
T ss_pred hhhcEEEEEcCCchHH
Confidence 2356899888865433
No 249
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.39 E-value=7.4e+02 Score=24.97 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=48.1
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEcCCCCchhhhhhh
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 185 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~--~v~vp~g~~lLsD~l~ 185 (394)
++.++.-++...+..-.....|.+++-||.+.++-|.+.. .. +-+.+.++.+|.+..-| +|-.|--+++-.+.++
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~-~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~ 109 (285)
T PRK14191 33 KLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENT-TE-AELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVL 109 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CH-HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 4544444444444555667789999999999999999886 33 44556678998766544 4444543354334443
No 250
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=24.26 E-value=7.3e+02 Score=24.83 Aligned_cols=90 Identities=7% Similarity=-0.079 Sum_probs=58.0
Q ss_pred hcCcc--ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCCC-ChhHH----HHHHHHHHh------CCceEEE
Q 016164 76 MHGLE--IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKH-EKKVL----EMIGRKLKK------NSVALDI 141 (394)
Q Consensus 76 L~~l~--~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~~-d~~~l----~~~akkLKk------nnI~Vdi 141 (394)
-|.+. |...|....-+..=+..+++...+..+.++++++ +-.... ..... ..+|++|.+ +++|+.+
T Consensus 40 ~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDlK~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~ 119 (265)
T cd08576 40 DHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFVWLDLKNPDLCGECSINAGRDLARKLLEPYWNGGSGARALY 119 (265)
T ss_pred eCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence 45553 3346777777777777777654455666665554 555542 23333 344444332 3499999
Q ss_pred EEeCCCCCCcHHHHHHHHHHhcCCC
Q 016164 142 VNFGEDDEGNTEKLEALLAAVNNND 166 (394)
Q Consensus 142 I~fG~e~~~n~~~l~~~~~~vn~~~ 166 (394)
|-.-... .+.+.++.|-+.++..+
T Consensus 120 ~~s~~~~-~~~~~~~~~~~~l~~~~ 143 (265)
T cd08576 120 GFSIPSI-TDSRFFKGIRDRLNSEE 143 (265)
T ss_pred EEEeccc-cchHHHHHHHHHHHhcC
Confidence 8888877 78899999999997433
No 251
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=24.25 E-value=2.9e+02 Score=25.05 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=35.7
Q ss_pred EEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCC
Q 016164 109 RIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 109 RIVlFvgSp~~~--d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
+|-|| ||.... ..+...++++.|.++|+ .+|+ |.... ++.+.++.+-..++-.+.++|.
T Consensus 3 ~I~V~-gss~~~~~~~~~A~~lg~~La~~g~--~lv~-Gg~~G----lM~a~a~ga~~~gg~viGVlp~ 63 (159)
T TIGR00725 3 QIGVI-GSSNKSEELYEIAYRLGKELAKKGH--ILIN-GGRTG----VMEAVSKGAREAGGLVVGILPD 63 (159)
T ss_pred EEEEE-eCCCCChHHHHHHHHHHHHHHHCCC--EEEc-CCchh----HHHHHHHHHHHCCCeEEEECCh
Confidence 44455 444322 23355788999999997 4555 65554 8888887776444434444443
No 252
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.18 E-value=7.6e+02 Score=25.04 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=48.7
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--cEEEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S~~v~vp~g~~lLsD~l~s 186 (394)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+ |...++.+|.+.. .-+|-.|--.++-.+.++.
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~e-l~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~ 110 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDA-PAEE-LYDTIDELNADEDVHGILVQMPVPDHVDDREVLR 110 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHh
Confidence 5544444554444555567789999999999999999887 4444 5566689987664 3455445433543444443
No 253
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=24.01 E-value=42 Score=37.19 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=20.1
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 111 VlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
|||+.++..+--..+.++|++.+..+..+.+|++|...
T Consensus 119 il~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~ 156 (707)
T PF03028_consen 119 ILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQ 156 (707)
T ss_dssp EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHH
T ss_pred eEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCch
Confidence 56666776554455666666554333788999998765
No 254
>PTZ00062 glutaredoxin; Provisional
Probab=23.97 E-value=3.3e+02 Score=25.95 Aligned_cols=97 Identities=13% Similarity=0.177 Sum_probs=56.5
Q ss_pred EEEecCCccEEEECCCC-CHHHHHHHhcCccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCCCChhHHHHH
Q 016164 51 VMTMAGKGVRVLVTPTS-DLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKHEKKVLEMI 128 (394)
Q Consensus 51 LVtmag~~a~vLvtlT~-D~~kilsaL~~l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~~d~~~l~~~ 128 (394)
++.+.++ .++-.+.+ |+.++.++++...-.+.. .. +..-++. -...++||||+ |+|....=....++
T Consensus 66 fv~~~~g--~~i~r~~G~~~~~~~~~~~~~~~~~~~--~~----~~~~v~~---li~~~~Vvvf~Kg~~~~p~C~~C~~~ 134 (204)
T PTZ00062 66 FEFYQNS--QLINSLEGCNTSTLVSFIRGWAQKGSS--ED----TVEKIER---LIRNHKILLFMKGSKTFPFCRFSNAV 134 (204)
T ss_pred EEEEECC--EEEeeeeCCCHHHHHHHHHHHcCCCCH--HH----HHHHHHH---HHhcCCEEEEEccCCCCCCChhHHHH
Confidence 4455554 44555554 999999988775322221 11 1222222 12456789998 44543233456678
Q ss_pred HHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 129 GRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 129 akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
-+.|++.+|....+.+-.. .++.+.+.+..
T Consensus 135 k~~L~~~~i~y~~~DI~~d----~~~~~~l~~~s 164 (204)
T PTZ00062 135 VNMLNSSGVKYETYNIFED----PDLREELKVYS 164 (204)
T ss_pred HHHHHHcCCCEEEEEcCCC----HHHHHHHHHHh
Confidence 8888899999888877643 34555555433
No 255
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=23.97 E-value=1.3e+02 Score=30.75 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHH---hCCc-eEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcC
Q 016164 121 EKKVLEMIGRKLK---KNSV-ALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 174 (394)
Q Consensus 121 d~~~l~~~akkLK---knnI-~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp 174 (394)
++.++.++-+.+. ..++ .|.|+|+-.. -++..+++++..+.. .+....+|-
T Consensus 186 TpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~--GKtt~~~~l~~~l~~-~g~~v~~iK 240 (366)
T PRK14489 186 TPEDLEQLRAIPDGTTTGAPPLLGVVGYSGT--GKTTLLEKLIPELIA-RGYRIGLIK 240 (366)
T ss_pred CHHHHHHHhhhhhcccCCCccEEEEecCCCC--CHHHHHHHHHHHHHH-cCCEEEEEE
Confidence 4666655543321 1111 3444444322 367777888877753 233344443
No 256
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.85 E-value=7.6e+02 Score=24.89 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=48.9
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--cEEEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S~~v~vp~g~~lLsD~l~s 186 (394)
.+.++.-++...+..-.....|.+++-||.+..+-|.+.. ...+ +.+.++.+|.+.+ .-+|-.|--+++-.+.+++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~~-l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~ 111 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADL-SEAE-LLARIDELNRDPKIHGILVQLPLPKHIDSHKVIE 111 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHh
Confidence 4444444444444555667789999999999999999877 4444 4566678987654 3555556544544444443
Q ss_pred C
Q 016164 187 T 187 (394)
Q Consensus 187 s 187 (394)
.
T Consensus 112 ~ 112 (285)
T PRK14189 112 A 112 (285)
T ss_pred h
Confidence 3
No 257
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=23.78 E-value=7.4e+02 Score=24.72 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=70.5
Q ss_pred EEEEeCChhhhCCC-CCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC-CC-HHHHHHHhc--Cc--
Q 016164 7 LICIDNSEWMRNGD-YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT-SD-LGKILACMH--GL-- 79 (394)
Q Consensus 7 vIvIDnSesMrngD-~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT-~D-~~kilsaL~--~l-- 79 (394)
+++||-+..-..-+ +.++-..+...+++.|++.- .-++|+++-... ..+ .+ ..-.+.++. .+
T Consensus 140 ~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G-----~~~i~~i~~~~~------~~~~~~R~~Gf~~al~~~~~~~ 208 (333)
T COG1609 140 VVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELG-----HRRIAFIGGPLD------SSASRERLEGYRAALREAGLPI 208 (333)
T ss_pred EEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCC-----CceEEEEeCCCc------cccHhHHHHHHHHHHHHCCCCC
Confidence 56666655511111 33678889999999999852 336777665421 111 11 122344442 22
Q ss_pred ----cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCce----EEEEEeCC
Q 016164 80 ----EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVA----LDIVNFGE 146 (394)
Q Consensus 80 ----~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~----VdiI~fG~ 146 (394)
-..|..+...|...+...|.... .+..-| |..+ ..-...+.+.+++.|++ |.||||+.
T Consensus 209 ~~~~i~~~~~~~~~g~~~~~~ll~~~~--~~ptAi--f~~n-----D~~Alg~l~~~~~~g~~vP~disviGfDd 274 (333)
T COG1609 209 NPEWIVEGDFSEESGYEAAERLLARGE--PRPTAI--FCAN-----DLMALGALRALRELGLRVPEDLSVIGFDD 274 (333)
T ss_pred CcceEEecCCChHHHHHHHHHHHhcCC--CCCcEE--EEcC-----cHHHHHHHHHHHHcCCCCCCeeEEEEecC
Confidence 23466788999999988887532 113333 3222 23345667778888887 89999998
No 258
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=23.76 E-value=3.6e+02 Score=22.71 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=32.0
Q ss_pred EEEe--cCCCCCChhHHHHHHHHHHhCC-ceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCC
Q 016164 111 IVFV--GSPIKHEKKVLEMIGRKLKKNS-VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 111 VlFv--gSp~~~d~~~l~~~akkLKknn-I~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
|||+ ||+... ......+++++++.. .+|. ++|=+.. +-++..++++...+-.+++.+|-
T Consensus 3 illvgHGSr~~~-~~~~~~l~~~l~~~~~~~v~-~~~lE~~----P~i~~~l~~l~~~G~~~i~lvPl 64 (103)
T cd03413 3 VVFMGHGTDHPS-NAVYAALEYVLREEDPANVF-VGTVEGY----PGLDDVLAKLKKAGIKKVTLMPL 64 (103)
T ss_pred EEEEECCCCchh-hhHHHHHHHHHHhcCCCcEE-EEEEcCC----CCHHHHHHHHHHcCCCEEEEEeh
Confidence 4455 566554 466778888887754 3333 3444322 23444444444344456666664
No 259
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=23.62 E-value=4.9e+02 Score=25.40 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=23.2
Q ss_pred ecCCCCCChhHHHHHHHHHHhCCce-EEEEEeCCCC
Q 016164 114 VGSPIKHEKKVLEMIGRKLKKNSVA-LDIVNFGEDD 148 (394)
Q Consensus 114 vgSp~~~d~~~l~~~akkLKknnI~-VdiI~fG~e~ 148 (394)
+++-+-.+-.+|..+++.++++||. |.|=.|.+.-
T Consensus 37 SdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGR 72 (223)
T PF06415_consen 37 SDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGR 72 (223)
T ss_dssp SS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SS
T ss_pred cCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 3444446899999999999999986 7776776544
No 260
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.53 E-value=4.2e+02 Score=28.61 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=37.2
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (394)
-.|+++++|.+. .++..-.++.|+..|..+-|.=+=.. .|++.++.|+.+..+
T Consensus 267 P~V~Ilcgpgnn-ggdg~v~gRHL~~~G~~~vi~~pk~s--~~~~~~~~L~~q~~~ 319 (453)
T KOG2585|consen 267 PLVAILCGPGNN-GGDGLVCGRHLAQHGYTPVIYYPKRS--LNVDLYKSLVKQCDG 319 (453)
T ss_pred ceEEEEeCCCCc-cchhHHHHHHHHHcCceeEEEeecCc--cchhHHHHHHHHhcC
Confidence 356667777765 34444499999999976655544433 467899999988864
No 261
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.48 E-value=7.6e+02 Score=24.85 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=48.4
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~--~v~vp~g~~lLsD~l~s 186 (394)
.++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+ |.+.++++|.+++-| +|-.|--.++-.+.++.
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~~~-l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~ 109 (282)
T PRK14166 32 CLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENT-TQNE-LLALINTLNHDDSVHGILVQLPLPDHICKDLILE 109 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4544444444444555567789999999999999999876 4444 556667898766544 44445433544444443
No 262
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=23.34 E-value=7e+02 Score=26.78 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016164 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (394)
Q Consensus 89 ~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (394)
.|+.+++.......++ ..++-||.+ .+.-+.+....+.|.++++.|.-|.|......+.++++.++
T Consensus 113 Es~Nlvl~~v~~~~~~-~~~k~iitl----~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i 178 (428)
T KOG1549|consen 113 ESNNLVLKGVARFFGD-KTKKHIITL----QTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAI 178 (428)
T ss_pred HHHHHHHHHhhccccc-cccceEEEe----cccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhc
Confidence 4666776666554444 333334332 33345677888899999988888888855544444444444
No 263
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=23.32 E-value=3e+02 Score=29.11 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=40.8
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 159 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (394)
.|+||-.|.-..++.-...+|+.|+|.+|.|.++.|.... -.+|++.+.
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~--~~eI~~~i~ 296 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDAD--PSEIVEEIL 296 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCC--HHHHHHHHh
Confidence 7888888888777888889999999999999999999875 346666654
No 264
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=23.06 E-value=2.7e+02 Score=22.18 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=29.5
Q ss_pred cCCCC-CChhHHHHHHHHHHhCC--ceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 115 GSPIK-HEKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 115 gSp~~-~d~~~l~~~akkLKknn--I~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
||+.. .-...+.++++++++.. ..| .++|-.... +-+...++.+...+-.+++++|-.
T Consensus 8 Gs~~~s~~~~~~~~~~~~l~~~~~~~~v-~~a~~~~~~---P~i~~~l~~l~~~g~~~vvvvPl~ 68 (101)
T cd03409 8 GSPYKDPYKKDIEAQAHNLAESLPDFPY-YVGFQSGLG---PDTEEAIRELAEEGYQRVVIVPLA 68 (101)
T ss_pred CCCCCccHHHHHHHHHHHHHHHCCCCCE-EEEEECCCC---CCHHHHHHHHHHcCCCeEEEEeCc
Confidence 56654 33456677777776642 333 345554411 123333344433344677777764
No 265
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.04 E-value=89 Score=23.64 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeC
Q 016164 121 EKKVLEMIGRKLKKNSVALDIVNFG 145 (394)
Q Consensus 121 d~~~l~~~akkLKknnI~VdiI~fG 145 (394)
......+++++|++.|++|.+.-.+
T Consensus 13 ~~~~a~~i~~~Lr~~g~~v~~~~~~ 37 (91)
T cd00859 13 ALSEALELAEQLRDAGIKAEIDYGG 37 (91)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCC
Confidence 4456788999999999999875543
No 266
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.01 E-value=2.6e+02 Score=21.80 Aligned_cols=66 Identities=9% Similarity=0.255 Sum_probs=40.1
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 111 VlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
|+|++..... .+...+++.+++.+-.+-+|.++... . ...+.... .. +-..|+.-|-.++-|...|
T Consensus 46 ~iiid~~~~~--~~~~~~~~~i~~~~~~~~ii~~t~~~-~-~~~~~~~~-~~---g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 46 LIIIDLELPD--GDGLELLEQIRQINPSIPIIVVTDED-D-SDEVQEAL-RA---GADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEEEESSSSS--SBHHHHHHHHHHHTTTSEEEEEESST-S-HHHHHHHH-HT---TESEEEESSSSHHHHHHHH
T ss_pred EEEEEeeecc--ccccccccccccccccccEEEecCCC-C-HHHHHHHH-HC---CCCEEEECCCCHHHHHHhh
Confidence 5666655543 45667888888877777888888765 3 34444443 22 3456777776554455443
No 267
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=22.86 E-value=3.6e+02 Score=22.86 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=29.4
Q ss_pred cCCCCCChhHHHHHHHHHHhCC--ceE--EEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCC
Q 016164 115 GSPIKHEKKVLEMIGRKLKKNS--VAL--DIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 115 gSp~~~d~~~l~~~akkLKknn--I~V--diI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
||........+.+++..+++.. ..| -.+.++... =.+.++.+. ..+-.+++++|-
T Consensus 10 GS~~~~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~--l~~~l~~l~----~~g~~~v~vvPl 68 (126)
T PRK00923 10 GSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPT--IPEALKKLI----GTGADKIIVVPV 68 (126)
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCC--HHHHHHHHH----HcCCCEEEEEch
Confidence 5654444567788888888742 233 334445433 133444443 233457777753
No 268
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.71 E-value=3.2e+02 Score=27.58 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=46.5
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEcCCCCchhhhhh
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVL 184 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~--~v~vp~g~~lLsD~l 184 (394)
.+.++.-++...+..-.....|.+++-||.+.++-|.+.. .. +-+..+++.+|.++.-| +|-.|--+|+-...+
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~-~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i 106 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPEST-SQ-EELLELIARLNADPEVDGILVQLPLPPHIDFQRV 106 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CH-HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence 3444444443333445557789999999999999998876 34 44556777998766544 444454345433333
No 269
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.68 E-value=5.8e+02 Score=23.09 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCc
Q 016164 89 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSS 168 (394)
Q Consensus 89 ~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S 168 (394)
+|..+....|++... ...| |.|+|+. ++.+.+++++|++.-=.+.|+|.-..-+ +.+-.+++++.+|...-.
T Consensus 32 ~g~dl~~~l~~~~~~--~~~~-ifllG~~----~~~~~~~~~~l~~~yP~l~ivg~~~g~f-~~~~~~~i~~~I~~~~pd 103 (172)
T PF03808_consen 32 TGSDLFPDLLRRAEQ--RGKR-IFLLGGS----EEVLEKAAANLRRRYPGLRIVGYHHGYF-DEEEEEAIINRINASGPD 103 (172)
T ss_pred CHHHHHHHHHHHHHH--cCCe-EEEEeCC----HHHHHHHHHHHHHHCCCeEEEEecCCCC-ChhhHHHHHHHHHHcCCC
Confidence 344444445544211 2345 4455554 6778888888888877778887665542 445566666666643333
Q ss_pred EEE
Q 016164 169 HLV 171 (394)
Q Consensus 169 ~~v 171 (394)
.++
T Consensus 104 iv~ 106 (172)
T PF03808_consen 104 IVF 106 (172)
T ss_pred EEE
Confidence 333
No 270
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.56 E-value=8.2e+02 Score=24.82 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=49.7
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--cEEEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S~~v~vp~g~~lLsD~l~s 186 (394)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ...+++ ..++++|.+.. .-+|-.|--+++-.+.++.
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-t~~el~-~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~ 112 (297)
T PRK14168 35 GLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDI-TEEELL-ALIDKYNNDDSIHGILVQLPLPKHINEKKVLN 112 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4444444444444555567789999999999999999887 454455 56678987654 3455556444544555544
Q ss_pred C
Q 016164 187 T 187 (394)
Q Consensus 187 s 187 (394)
.
T Consensus 113 ~ 113 (297)
T PRK14168 113 A 113 (297)
T ss_pred c
Confidence 3
No 271
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=22.37 E-value=3.7e+02 Score=23.67 Aligned_cols=63 Identities=16% Similarity=0.009 Sum_probs=41.4
Q ss_pred EEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC----------C-CcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 111 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD----------E-GNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 111 VlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~----------~-~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
++++..|...+-.+...+.+.+++.++++.-|-+---. . .+.+.+++|++.+ .-.++..||-.
T Consensus 95 viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ip~~ 168 (169)
T cd02037 95 AVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEEL---GVPLLGKIPLD 168 (169)
T ss_pred EEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHc---CCCEEEeccCC
Confidence 55566666667888889999999998876543222110 0 0235788888777 45677777754
No 272
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=22.23 E-value=99 Score=23.69 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 100 HRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 100 hr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
.||.+.......+|+.-....+...+..+.+.|++.-..+.++|
T Consensus 32 Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~~~lG 75 (75)
T cd04880 32 SRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDVKVLG 75 (75)
T ss_pred eeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCeeEECC
Confidence 45555545556666654443356778888888888776666654
No 273
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=22.16 E-value=2.4e+02 Score=22.67 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=26.6
Q ss_pred EEEecCCCC----CChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 111 IVFVGSPIK----HEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 111 VlFvgSp~~----~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
|+|-.+.+. .--.-|..+.+++++.++.+.++|.-...
T Consensus 46 vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~~~~~ 87 (108)
T TIGR00377 46 IVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVSPRV 87 (108)
T ss_pred EEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 444445544 23567788899999999999998875443
No 274
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.00 E-value=2.6e+02 Score=19.32 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 120 HEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 120 ~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
..++-+.++.+.|++++|+++.|..+...
T Consensus 10 ~~~~~~~~i~~~L~~~~i~i~~i~~~~~~ 38 (61)
T cd04891 10 DKPGVAAKIFSALAEAGINVDMIVQSVSR 38 (61)
T ss_pred CCCcHHHHHHHHHHHcCCcEEEEEEcCCC
Confidence 35778889999999999999999887543
No 275
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=21.94 E-value=2e+02 Score=25.09 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=35.2
Q ss_pred HHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC
Q 016164 96 LALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE 149 (394)
Q Consensus 96 lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~ 149 (394)
..|+.|-.+ ..-+.|+|--+|.-+.+-...-+.+.||..+++|+=|++|=..+
T Consensus 46 ~~L~~ri~~-~~i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvsRlA~GiP~G 98 (112)
T cd01025 46 DKLLERIAK-GQVKEVILATNPTVEGEATALYIAKLLKDFGVKVTRLAQGIPVG 98 (112)
T ss_pred HHHHHHHhc-CCCcEEEEecCCCchHHHHHHHHHHHHhHcCCCeEEEEEcCCCC
Confidence 344455432 22344555556655556667778889999999999999987653
No 276
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=21.85 E-value=6e+02 Score=23.61 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=46.3
Q ss_pred cCcccH------HHHHHHHHHHhhhcCC----CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCc
Q 016164 82 GGELNL------AAGIQVAQLALKHRQN----KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGN 151 (394)
Q Consensus 82 ~G~~sL------~~gL~iA~lALkhr~~----k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n 151 (394)
.|+..+ ...++.+...|.++.. ...+.|||++ +-+.+.+.-.+.-++..|+.+|. +||-+|... .
T Consensus 49 ~gei~va~~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~vv~~-t~~gd~H~lG~~~v~~~l~~~G~--~vi~LG~~v-p- 123 (197)
T TIGR02370 49 DGELFLPHVMMSADAMLAGIKVLTPEMEKAVETEVLGKVVCG-VAEGDVHDIGKNIVVTMLRANGF--DVIDLGRDV-P- 123 (197)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEE-eCCCchhHHHHHHHHHHHHhCCc--EEEECCCCC-C-
Confidence 466655 5556655555554322 1233465443 44434455555666777888888 677788887 3
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcC
Q 016164 152 TEKLEALLAAVNNNDSSHLVHVP 174 (394)
Q Consensus 152 ~~~l~~~~~~vn~~~~S~~v~vp 174 (394)
.+.|++.+.. .+.++|.+.
T Consensus 124 ---~e~~v~~~~~-~~pd~v~lS 142 (197)
T TIGR02370 124 ---IDTVVEKVKK-EKPLMLTGS 142 (197)
T ss_pred ---HHHHHHHHHH-cCCCEEEEc
Confidence 4455555542 334555444
No 277
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=21.80 E-value=9.2e+02 Score=25.11 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=48.4
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCC--cEEEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~--S~~v~vp~g~~lLsD~l~s 186 (394)
.++++.-+....+..-.....|.+++-||.+.++-|.+.. ...+++ ..++++|.+.. .-+|-.|--+++-.+.+++
T Consensus 88 ~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~-te~ell-~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~ 165 (345)
T PLN02897 88 GLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDC-TEGQIL-SALRKFNEDTSIHGILVQLPLPQHLDESKILN 165 (345)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 3444443443444555567789999999999999999887 455544 56778987654 3555555544544444443
No 278
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=21.67 E-value=2.1e+02 Score=20.80 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=24.1
Q ss_pred CCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 119 KHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 119 ~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
...++-+.++.+.|.+.+|+|+.|..+..
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~~~ 38 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQNVS 38 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 34578888999999999999999987643
No 279
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=21.61 E-value=3e+02 Score=26.03 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=46.7
Q ss_pred cccCcccHHHHHHHHHH------HhhhcCCCCCCe-EEEEEecCCCCCC--hhHHHHHHHHHHhCCceEEEEEeCCCCC
Q 016164 80 EIGGELNLAAGIQVAQL------ALKHRQNKKQQQ-RIIVFVGSPIKHE--KKVLEMIGRKLKKNSVALDIVNFGEDDE 149 (394)
Q Consensus 80 ~~~G~~sL~~gL~iA~l------ALkhr~~k~~~~-RIVlFvgSp~~~d--~~~l~~~akkLKknnI~VdiI~fG~e~~ 149 (394)
...|..++-..|.-+.. .|+++..+..+. +||++++-..+-. ..-+..++..+.+..-+|.++.|++...
T Consensus 23 ~~~~~lD~rrTir~~~r~~g~~~~l~~r~~r~~~~~~lvvl~DvSGSM~~~s~~~l~~~~~l~~~~~~~~~f~F~~~l~ 101 (222)
T PF05762_consen 23 RRRGRLDLRRTIRASLRTGGEPLRLVRRRRRPRKPRRLVVLCDVSGSMAGYSEFMLAFLYALQRQFRRVRVFVFSTRLT 101 (222)
T ss_pred CCCCCCCHHHHHHHHHhcCCCcceeeccccccCCCccEEEEEeCCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeehh
Confidence 44567777777766642 344444233444 8888887666642 4456677777888777999999998873
No 280
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=21.54 E-value=2.8e+02 Score=27.33 Aligned_cols=54 Identities=20% Similarity=0.123 Sum_probs=33.3
Q ss_pred eEEEEEecCCCCC---ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCC
Q 016164 108 QRIIVFVGSPIKH---EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND 166 (394)
Q Consensus 108 ~RIVlFvgSp~~~---d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~ 166 (394)
...|+|+|..... +...+.+.+.++++ ++.+.+||-|... +.|+++++..+-.+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~-~~~l~ivG~g~~~----~~l~~~~~~~~l~~ 236 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTG-EWQLHIIGDGSDF----EKCKAYSRELGIEQ 236 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCC-CeEEEEEeCCccH----HHHHHHHHHcCCCC
Confidence 3457777864322 23445555555544 6888888877543 57888888765333
No 281
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=21.48 E-value=1.5e+02 Score=27.41 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=30.1
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCC
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGED 147 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKk-nnI~VdiI~fG~e 147 (394)
+|+|+.+|+...+..-...+++.+++ .++.|.++.+.+.
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~ 42 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPET 42 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecccc
Confidence 67778889865556666677888887 8999999998754
No 282
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=21.47 E-value=3.3e+02 Score=25.61 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=29.7
Q ss_pred CCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 105 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 105 ~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
..++++|+|+|.... .+.+..+++.+++.++++.++|-|...
T Consensus 168 ~~~~~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~ 209 (335)
T cd03802 168 GPKGDYLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDP 209 (335)
T ss_pred CCCCCEEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCH
Confidence 355677888877633 344555666677789999999988654
No 283
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=21.41 E-value=1.3e+02 Score=25.18 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=28.0
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
|+|+.+|....++.-...+++.++..++.|+++.+..-
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~ 38 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADA 38 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccC
Confidence 35566887555666667788888889999998887643
No 284
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.41 E-value=8.2e+02 Score=24.37 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=48.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCC--CcEEEEcCCCCchhhhhhh
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLL 185 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~--~S~~v~vp~g~~lLsD~l~ 185 (394)
++.++.-+....+..-...-.+.+++-||....+-|.++. . .+-+..+++.+|.++ ...+|++|--.++..+.++
T Consensus 35 ~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~-~-~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~l 111 (283)
T PRK14192 35 ILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQET-T-TEQLLAKIEELNANPDVHGILLQHPVPAQIDERACF 111 (283)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCC-C-HHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHH
Confidence 4444444443333444455678889999999999998766 3 345778888998764 3577777764455444443
No 285
>PRK14974 cell division protein FtsY; Provisional
Probab=21.41 E-value=5.7e+02 Score=26.21 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=35.3
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
+.++|+|+|-+...=.-.+.+++..|++.+.+|-+|.--.--..-.+-|+.+++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 45789998877655344577899999999988877652211001124456666554
No 286
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.33 E-value=2.8e+02 Score=21.84 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=25.1
Q ss_pred cCCCCCChhHHHHHHHHHHhCCceEEEEEeC
Q 016164 115 GSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 145 (394)
Q Consensus 115 gSp~~~d~~~l~~~akkLKknnI~VdiI~fG 145 (394)
+.....+++-+.++.+.|.+++|.|+.|.-+
T Consensus 8 ~~~~~~~~g~~~~IF~~La~~~I~vDmI~~s 38 (75)
T cd04935 8 TLGMWQQVGFLADVFAPFKKHGVSVDLVSTS 38 (75)
T ss_pred cCCCCCccCHHHHHHHHHHHcCCcEEEEEeC
Confidence 4444556888889999999999999999753
No 287
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=21.28 E-value=2.5e+02 Score=28.16 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCC------------CcHHHHHHHHHHh-cCCCCcEEEEcCC
Q 016164 124 VLEMIGRKLKKNSVALDIVNFGEDDE------------GNTEKLEALLAAV-NNNDSSHLVHVPP 175 (394)
Q Consensus 124 ~l~~~akkLKknnI~VdiI~fG~e~~------------~n~~~l~~~~~~v-n~~~~S~~v~vp~ 175 (394)
.+.++.+.+++++. +|+=||+... .|.+.-++|-+-+ ++.+..|+|++|.
T Consensus 3 s~~ETl~~I~~~~~--Sv~RFGDGE~~li~g~~I~fQ~y~~~La~rLkeiL~~~~~~n~lVclpd 65 (265)
T TIGR03728 3 SIDETLDYIIKNNC--SVVRFGDGEIDLIAGESIGYQSYDPELAKRLKEILGNESDENLLVCLPD 65 (265)
T ss_pred CHHHHHHHHHHCCC--eEEEecCceeeeecCCCCCCCCCCHHHHHHHHHHHhcCCCCCeEEeCCc
Confidence 46678888888887 6677776432 4555555665555 5667888988887
No 288
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.26 E-value=2e+02 Score=21.86 Aligned_cols=22 Identities=9% Similarity=-0.031 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHhCCceEEEEE
Q 016164 122 KKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 122 ~~~l~~~akkLKknnI~VdiI~ 143 (394)
..++.++++++|++|+++-.|.
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 3568889999999998766554
No 289
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=21.22 E-value=4.9e+02 Score=21.72 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 122 KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 122 ~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
..++.++++.+|+.+++| |.+-... -+..+++.. +.+.+.||.+
T Consensus 56 t~e~i~~~~~a~~~g~~i--I~IT~~~-----~l~~~~~~~----~~~~~~~p~~ 99 (119)
T cd05017 56 TEETLSAVEQAKERGAKI--VAITSGG-----KLLEMAREH----GVPVIIIPKG 99 (119)
T ss_pred CHHHHHHHHHHHHCCCEE--EEEeCCc-----hHHHHHHHc----CCcEEECCCC
Confidence 467889999999999855 4444322 266666433 4677887775
No 290
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=21.17 E-value=1.6e+02 Score=27.90 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=24.8
Q ss_pred EEEEEecCCCC-CChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 109 RIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 109 RIVlFvgSp~~-~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
+|++|..++.. ..+.....+++.|++.|+.|.++.+...
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 56666555542 2455666777777777777777776543
No 291
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.14 E-value=8.5e+02 Score=24.48 Aligned_cols=75 Identities=8% Similarity=0.125 Sum_probs=45.9
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE--EEEcCCCCchhhhhhh
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 185 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~--~v~vp~g~~lLsD~l~ 185 (394)
.+.++.-++...+..-.....|.+++-||.+..+-|.+.. ...+ +...++++|.+++-| +|-.|--.++-...++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~e-l~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~ 110 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESI-SEED-LINEIEELNKDNNVHGIMLQLPLPKHLDEKKIT 110 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 3433333333333444456689999999999999999887 4545 445568998776544 4444543354334343
No 292
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=21.02 E-value=67 Score=26.58 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=11.9
Q ss_pred CCCCCChHHHHHHHHhh
Q 016164 366 GVDPEDPSVKDVLTSMQ 382 (394)
Q Consensus 366 gvdpn~~~i~~~~~~~~ 382 (394)
||||+|+.||.++..+.
T Consensus 51 g~~p~s~evq~l~~~~~ 67 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWM 67 (118)
T ss_dssp T--TT-HHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHH
Confidence 79999999999987664
No 293
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=20.91 E-value=3.4e+02 Score=27.44 Aligned_cols=38 Identities=8% Similarity=0.203 Sum_probs=27.6
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
+++|.+-..+.+...+.++++.++++++.+ ||++|...
T Consensus 54 ~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~-IiaiGGGs 91 (370)
T cd08551 54 VVIFDGVEPNPTLSNVDAAVAAYREEGCDG-VIAVGGGS 91 (370)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHhcCCCE-EEEeCCch
Confidence 455654444556778888888888888876 88888755
No 294
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.76 E-value=3.8e+02 Score=22.76 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=36.1
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHH
Q 016164 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAA 161 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (394)
...+.|.|+|+.....+ .+..+++++++. ++.+.+..-|... +.+.++.+.+.
T Consensus 43 ~~~~~i~~~ggep~~~~-~~~~~i~~~~~~~~~~~~~i~T~~~~~--~~~~~~~l~~~ 97 (204)
T cd01335 43 RGVEVVILTGGEPLLYP-ELAELLRRLKKELPGFEISIETNGTLL--TEELLKELKEL 97 (204)
T ss_pred cCceEEEEeCCcCCccH-hHHHHHHHHHhhCCCceEEEEcCcccC--CHHHHHHHHhC
Confidence 34566777777666655 788888888888 7777776555442 45677777653
No 295
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=20.64 E-value=1.4e+02 Score=29.21 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhCCceEEEEEeCC
Q 016164 124 VLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 124 ~l~~~akkLKknnI~VdiI~fG~ 146 (394)
-...+++.|++.+..|.+|+++.
T Consensus 17 ~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 17 PALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred HHHHHHHHHHhCCCEEEEEECCC
Confidence 34456666666666666665543
No 296
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.63 E-value=1.6e+02 Score=27.78 Aligned_cols=35 Identities=14% Similarity=0.378 Sum_probs=24.0
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
..-|+++|. |.. +.++..+++++|...+|.+-.|+
T Consensus 81 ~~DRVllfs--~~~-~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFS--PFS-TDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEE--S-S---HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEe--CCC-CCHHHHHHHHHHHHCCCCEEEEE
Confidence 567888884 433 35688999999999999888887
No 297
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=20.55 E-value=6.4e+02 Score=22.81 Aligned_cols=108 Identities=8% Similarity=0.120 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCH-HHHHHHhcCcc------ccCcccHHHHHHH
Q 016164 21 YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDL-GKILACMHGLE------IGGELNLAAGIQV 93 (394)
Q Consensus 21 ~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~-~kilsaL~~l~------~~G~~sL~~gL~i 93 (394)
+.++-.++...+++.+++. ...+|+++..... . . ..+.++ .-+..++.... ..+..+...+.+.
T Consensus 94 v~~d~~~~~~~~~~~l~~~-----g~~~i~~v~~~~~--~-~-~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T cd01542 94 VVYDDYGAGYELGEYLAQQ-----GHKNIAYLGVSES--D-I-AVGILRKQGYLDALKEHGICPPNIVETDFSYESAYEA 164 (259)
T ss_pred EEECcHHHHHHHHHHHHHc-----CCCcEEEEcCCcc--c-c-hhHHHHHHHHHHHHHHcCCChHHeeeccCchhhHHHH
Confidence 3467777888888888773 3457887742211 1 0 001111 11223332211 1334455566665
Q ss_pred HHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCce----EEEEEeCCCC
Q 016164 94 AQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVA----LDIVNFGEDD 148 (394)
Q Consensus 94 A~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~----VdiI~fG~e~ 148 (394)
....|+. . . -. .||+.+ ......+.+.|++.|++ |.||||+...
T Consensus 165 ~~~~l~~--~--~-~~-~i~~~~-----d~~a~g~~~~l~~~g~~vp~di~v~g~d~~~ 212 (259)
T cd01542 165 AQELLEP--Q--P-PD-AIVCAT-----DTIALGAMKYLQELGRRIPEDISVAGFGGYE 212 (259)
T ss_pred HHHHhcC--C--C-CC-EEEEcC-----cHHHHHHHHHHHHcCCCCCCceEEEecCCch
Confidence 5555543 1 1 12 333222 22344667777888876 6888888653
No 298
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=20.50 E-value=3.3e+02 Score=26.28 Aligned_cols=49 Identities=10% Similarity=-0.041 Sum_probs=35.6
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
-|||.|++..........+++.+.+.+++|--|++|-.. ++.+|..++.
T Consensus 58 givl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~Q~-----l~~~~g~~~~ 106 (235)
T cd01746 58 GILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQL-----AVIEFARNVL 106 (235)
T ss_pred EEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHHHH-----HHHHHHHHhc
Confidence 377778886543445567788888999999999999876 5666655543
No 299
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=20.49 E-value=1.3e+02 Score=25.70 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=23.9
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 016164 140 DIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVH 172 (394)
Q Consensus 140 diI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~ 172 (394)
|||.=+.+. .|.++|.+|++.++.+-...+.+
T Consensus 4 DVi~~~~~i-~Nl~kl~~Fi~nv~~~k~d~IrI 35 (98)
T PF14275_consen 4 DVINKHGEI-ENLDKLDQFIENVEQGKPDKIRI 35 (98)
T ss_pred CEEEeCCeE-EeHHHHHHHHHHHhcCCCCEEEE
Confidence 466557788 89999999999998765443333
No 300
>KOG3572 consensus Uncharacterized conserved protein, contains DEP domain [Signal transduction mechanisms]
Probab=20.48 E-value=1.9e+02 Score=35.10 Aligned_cols=65 Identities=18% Similarity=0.413 Sum_probs=47.1
Q ss_pred cccHHHHHHHHHHHhh----hcCCCCCCeEEEEEe-cCCC-CCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 84 ELNLAAGIQVAQLALK----HRQNKKQQQRIIVFV-GSPI-KHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 84 ~~sL~~gL~iA~lALk----hr~~k~~~~RIVlFv-gSp~-~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
+-+|...|.+|...|. .|.=....+-|||++ |+-+ ..|..-+.-+.++|-..+|.+|+|++|+.-
T Consensus 428 ~gNfLEvVNms~n~F~~~yidrdf~rTgq~iiiVTPG~GvfeVDr~Ll~LTkqrlid~gigmDlVCLgeqP 498 (1701)
T KOG3572|consen 428 DGNFLEVVNMSMNSFSMYYIDRDFERTGQQIIIVTPGNGVFEVDRDLLSLTKQRLIDMGIGMDLVCLGEQP 498 (1701)
T ss_pred ccchHHhhhhhhhhccchhhhccccccceEEEEEcCCCceeeecHHHHHHhhhHhhhcccceeEEEccCCc
Confidence 4567788888877663 232244667777665 3333 348888888899999999999999999853
No 301
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.46 E-value=9.1e+02 Score=24.51 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=48.4
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCc--EEEEcCCCCchhhhhhhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSS--HLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S--~~v~vp~g~~lLsD~l~s 186 (394)
+++++.-++...+..-.....|.+++-||.+.++-|.+.. ... -+...++++|.+..- -+|-.|--.++-...++.
T Consensus 34 ~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~-el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~ 111 (297)
T PRK14186 34 GLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADT-SQA-EVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLH 111 (297)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4544444444444555567789999999999999998876 343 455666889876643 444445444544444443
Q ss_pred C
Q 016164 187 T 187 (394)
Q Consensus 187 s 187 (394)
.
T Consensus 112 ~ 112 (297)
T PRK14186 112 A 112 (297)
T ss_pred c
Confidence 3
No 302
>PLN02681 proline dehydrogenase
Probab=20.35 E-value=2.3e+02 Score=30.30 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=29.0
Q ss_pred EecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 016164 113 FVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 153 (394)
Q Consensus 113 FvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~ 153 (394)
|++|. +..+..+++++|++.||.+ ++.+..|...+.+
T Consensus 88 F~aGE---t~~e~~~~i~~L~~~G~~~-iLdy~~E~~~~e~ 124 (455)
T PLN02681 88 FCAGE---DAEEAARTVRRLWELGLGG-ILDYAAEDAGDNA 124 (455)
T ss_pred eecCC---CHHHHHHHHHHHHHCCCeE-EeeccccCcCCHH
Confidence 66665 6889999999999999999 7777776644433
No 303
>PRK00170 azoreductase; Reviewed
Probab=20.35 E-value=2e+02 Score=25.99 Aligned_cols=41 Identities=7% Similarity=0.174 Sum_probs=29.0
Q ss_pred eEEEEEecCCCCC-C--hhHHHHHHHHHHhC--CceEEEEEeCCCC
Q 016164 108 QRIIVFVGSPIKH-E--KKVLEMIGRKLKKN--SVALDIVNFGEDD 148 (394)
Q Consensus 108 ~RIVlFvgSp~~~-d--~~~l~~~akkLKkn--nI~VdiI~fG~e~ 148 (394)
++|+++.|||... . ..-+...++.|++. +..|.++.+....
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~ 47 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEP 47 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 4788999999753 2 22333567778887 8999999887543
No 304
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=20.28 E-value=3e+02 Score=22.78 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHHhCCce-EEEEEeCCCCCCcHHHHHHHHH
Q 016164 121 EKKVLEMIGRKLKKNSVA-LDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 121 d~~~l~~~akkLKknnI~-VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
+.....+.+++|++.++. +.++-+|-.. +|.+-++++++
T Consensus 125 ~~~~~~~~l~~l~~~g~~~~~~~i~~~~~-~~~~e~~~~~~ 164 (166)
T PF04055_consen 125 SFERVLEALERLKEAGIPRVIIFIVGLPG-ENDEEIEETIR 164 (166)
T ss_dssp HHHHHHHHHHHHHHTTSETEEEEEEEBTT-TSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEeCC-CCHHHHHHHhC
Confidence 455677888888888887 6666666665 56666666654
No 305
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=20.27 E-value=5.3e+02 Score=21.78 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 88 AAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 88 ~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
.-|..+|+..+++ ...++|+..-+ .+...+.+++.+++..+..+.++-.- . .+.+-++.+++.+.
T Consensus 11 giG~~~a~~l~~~-----g~~~v~~~~r~---~~~~~~~~l~~~l~~~~~~~~~~~~D--~-~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 11 GIGRALARALARR-----GARVVILTSRS---EDSEGAQELIQELKAPGAKITFIECD--L-SDPESIRALIEEVI 75 (167)
T ss_dssp HHHHHHHHHHHHT-----TTEEEEEEESS---CHHHHHHHHHHHHHHTTSEEEEEESE--T-TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CceEEEEeeec---cccccccccccccccccccccccccc--c-cccccccccccccc
Confidence 3466677666654 33444544333 44677788899999889888888732 3 45677888888775
No 306
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=20.27 E-value=1.9e+02 Score=29.90 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=32.4
Q ss_pred CCCeEEEEEec-CCCCC---ChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 105 KQQQRIIVFVG-SPIKH---EKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 105 ~~~~RIVlFvg-Sp~~~---d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+.++||++|+. +|... -+..+..+++.|++.|..|.||....
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57789999985 44322 24578899999999999999998654
No 307
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.08 E-value=3.2e+02 Score=25.10 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeCCCCCCc---HHHHHHHHH
Q 016164 121 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGN---TEKLEALLA 160 (394)
Q Consensus 121 d~~~l~~~akkLKknnI~VdiI~fG~e~~~n---~~~l~~~~~ 160 (394)
|+.++.+.++.+++.||..-.|+|==.. .| ..+++.++.
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~-~np~hE~~v~eii~ 173 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSY-RNPEHEQRVAEIIR 173 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCC-CCHHHHHHHHHHHH
Confidence 7889999999999999988888765443 33 445555554
No 308
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=20.03 E-value=78 Score=21.89 Aligned_cols=17 Identities=6% Similarity=0.350 Sum_probs=12.9
Q ss_pred hhhhcCCHHHHHHHHhc
Q 016164 347 MSQLLADQAFVSSILAS 363 (394)
Q Consensus 347 ~~~~~~d~~fl~s~l~~ 363 (394)
..++++||.+++.++.+
T Consensus 17 l~~~~~nP~~~~~~~~~ 33 (41)
T smart00727 17 LQDMQQNPDMLAQMLQE 33 (41)
T ss_pred HHHHHHCHHHHHHHHHh
Confidence 34456699999999876
No 309
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=20.01 E-value=2.1e+02 Score=25.93 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=39.3
Q ss_pred hcCccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 76 MHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 76 L~~l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
|.-..|.|---..-.++-|...|+. .....+|+++++.+| ..+.+|.+.++.+.-|++|.-
T Consensus 45 l~ma~P~gvk~~i~sve~a~~~l~~--~~~~~~~v~il~k~~---------~~~~~l~~~g~~i~~vnvG~~ 105 (151)
T cd00001 45 LKLAAPPGVKLRIFTVEKAIEAINS--PKYDKQRVFLLFKNP---------QDVLRLVEGGVPIKTINVGNM 105 (151)
T ss_pred HHhhCCCCCeEEEEEHHHHHHHHhC--cCCCCceEEEEECCH---------HHHHHHHHcCCCCCEEEECCC
Confidence 3334555532223355666677765 345677888776666 456666778998999999964
Done!