Query 016164
Match_columns 394
No_of_seqs 241 out of 475
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_W RPN10, 26S proteasome r 100.0 4.8E-78 1.6E-82 582.8 22.2 250 1-251 1-252 (268)
2 2x5n_A SPRPN10, 26S proteasome 100.0 9.6E-46 3.3E-50 339.6 22.5 189 2-192 1-189 (192)
3 1yx4_A 26S proteasome non-ATPa 99.9 9.1E-27 3.1E-31 201.6 8.4 103 208-338 23-125 (132)
4 1jey_B KU80; double-strand DNA 99.9 7.3E-21 2.5E-25 199.1 17.4 161 4-164 8-217 (565)
5 3ibs_A Conserved hypothetical 99.8 3.5E-19 1.2E-23 160.6 20.7 163 5-180 13-202 (218)
6 1ijb_A VON willebrand factor; 99.7 2.2E-15 7.6E-20 136.1 18.8 160 5-175 15-180 (202)
7 1q0p_A Complement factor B; VO 99.7 1.7E-15 6E-20 136.3 17.1 162 5-176 17-205 (223)
8 1atz_A VON willebrand factor; 99.7 3.7E-15 1.3E-19 132.4 18.5 157 5-175 7-169 (189)
9 1shu_X Anthrax toxin receptor 99.7 8.7E-16 3E-20 134.4 14.1 163 5-184 8-174 (182)
10 2xgg_A Microneme protein 2; A/ 99.6 5.7E-15 1.9E-19 130.8 16.4 137 5-148 19-163 (178)
11 4hqo_A Sporozoite surface prot 99.6 5.5E-15 1.9E-19 139.8 16.1 162 5-175 20-191 (266)
12 3n2n_F Anthrax toxin receptor 99.6 2.7E-15 9.4E-20 131.5 12.4 154 5-175 9-168 (185)
13 1jey_A KU70; double-strand DNA 99.6 4.8E-15 1.7E-19 156.7 16.4 145 4-148 36-209 (609)
14 1mf7_A Integrin alpha M; cell 99.6 2.4E-15 8.2E-20 133.9 10.9 160 5-176 7-175 (194)
15 4fx5_A VON willebrand factor t 99.6 3.8E-14 1.3E-18 145.5 21.2 147 5-163 79-234 (464)
16 2b2x_A Integrin alpha-1; compu 99.6 6E-14 2E-18 128.2 18.9 162 5-176 24-197 (223)
17 1v7p_C Integrin alpha-2; snake 99.6 8.8E-14 3E-18 124.8 19.5 165 5-183 8-187 (200)
18 1n3y_A Integrin alpha-X; alpha 99.6 7.4E-15 2.5E-19 130.4 11.5 161 5-176 11-179 (198)
19 4hqf_A Thrombospondin-related 99.6 3.1E-14 1.1E-18 135.0 15.9 164 5-176 23-195 (281)
20 2x31_A Magnesium-chelatase 60 99.6 4.2E-16 1.4E-20 138.0 0.6 149 4-162 6-164 (189)
21 1pt6_A Integrin alpha-1; cell 99.5 1E-13 3.5E-18 125.5 16.2 170 5-184 9-189 (213)
22 1rrk_A Complement factor B; BB 99.5 5.9E-14 2E-18 141.6 14.2 169 5-184 3-198 (497)
23 2odp_A Complement C2; C3/C5 co 99.5 1.9E-13 6.6E-18 138.7 13.2 163 5-176 11-199 (509)
24 3hrz_D Complement factor B; se 99.4 1.3E-12 4.5E-17 138.0 14.5 162 5-176 245-433 (741)
25 3zqk_A VON willebrand factor; 99.4 5.9E-12 2E-16 113.4 14.3 140 5-160 23-169 (199)
26 1mjn_A Integrin alpha-L; rossm 99.2 2.9E-11 1E-15 107.1 10.6 152 5-175 4-164 (179)
27 3k6s_A Integrin alpha-X; cell 99.2 1.8E-11 6E-16 137.4 9.6 161 5-176 132-300 (1095)
28 1yvr_A RO autoantigen, 60-kDa 98.8 6.7E-09 2.3E-13 107.9 9.9 129 5-148 370-505 (538)
29 2ww8_A RRGA, cell WALL surface 98.7 3.3E-08 1.1E-12 109.1 11.3 114 5-119 226-391 (893)
30 3rag_A Uncharacterized protein 98.5 2.1E-07 7E-12 88.8 8.8 88 5-99 136-226 (242)
31 2nvo_A RO sixty-related protei 98.5 7.9E-07 2.7E-11 92.7 13.9 129 5-148 364-501 (535)
32 2nut_A Protein transport prote 98.5 6.9E-07 2.4E-11 97.1 13.4 146 5-163 134-372 (769)
33 2iue_A Pactolus I-domain; memb 98.3 1.6E-05 5.4E-10 74.4 16.2 166 5-184 5-205 (212)
34 1pcx_A Protein transport prote 98.2 1.1E-05 3.6E-10 88.3 14.6 148 5-163 189-404 (810)
35 1m2v_B SEC24, protein transpor 98.1 2.1E-05 7.2E-10 87.2 13.8 148 5-163 305-520 (926)
36 1m2o_A SEC23, protein transpor 98.1 8.4E-05 2.9E-09 80.8 17.5 146 5-163 123-366 (768)
37 3eh2_A Protein transport prote 97.7 0.0005 1.7E-08 74.8 15.4 149 5-163 175-389 (766)
38 3eh1_A Protein transport prote 97.6 0.0008 2.7E-08 73.1 15.9 146 5-163 162-368 (751)
39 3efo_B SEC24 related gene fami 97.6 0.00046 1.6E-08 75.1 13.5 149 5-163 179-393 (770)
40 2klz_A Ataxin-3; UIM, ubiquiti 97.6 1.2E-05 4.2E-10 58.6 0.8 39 291-339 5-43 (52)
41 3fcs_B Integrin beta-3; beta p 97.5 0.0012 4.2E-08 71.1 15.3 160 5-177 113-337 (690)
42 3k6s_B Integrin beta-2; cell r 97.2 0.00055 1.9E-08 73.7 7.8 158 5-176 106-326 (687)
43 3vi3_B Integrin beta-1; beta p 97.1 0.02 6.9E-07 58.9 17.6 165 5-183 124-350 (454)
44 1p9c_A 26S proteasome non-ATPa 97.0 0.00019 6.5E-09 51.8 1.1 22 317-338 16-37 (45)
45 3rag_A Uncharacterized protein 96.9 0.003 1E-07 60.2 9.1 73 105-184 8-83 (242)
46 3t3p_B Integrin beta-3; integr 96.9 0.027 9.1E-07 58.3 16.5 167 5-184 113-344 (472)
47 3v4v_B Integrin beta-7; cell a 96.7 0.04 1.4E-06 57.4 16.7 159 5-177 134-356 (503)
48 1q0v_A Hydrophilic protein; ha 95.0 0.015 5E-07 46.8 3.3 49 290-338 9-70 (81)
49 1yx4_A 26S proteasome non-ATPa 93.0 0.094 3.2E-06 45.6 4.5 91 209-307 28-124 (132)
50 3a1q_C Ubiquitin interaction m 90.6 0.27 9.2E-06 34.7 3.8 13 292-304 31-43 (45)
51 2klz_A Ataxin-3; UIM, ubiquiti 90.5 0.073 2.5E-06 38.9 0.9 19 290-308 24-42 (52)
52 2rr9_C Putative uncharacterize 89.4 0.44 1.5E-05 33.7 4.1 15 292-306 28-42 (46)
53 2rr9_C Putative uncharacterize 84.4 0.32 1.1E-05 34.5 1.1 18 320-337 1-18 (46)
54 3qhp_A Type 1 capsular polysac 83.0 11 0.00039 30.7 10.5 26 218-243 121-146 (166)
55 3a1q_C Ubiquitin interaction m 82.5 0.33 1.1E-05 34.2 0.6 19 319-337 3-21 (45)
56 1p9c_A 26S proteasome non-ATPa 75.0 0.74 2.5E-05 33.0 0.5 19 289-307 18-36 (45)
57 2jjm_A Glycosyl transferase, g 71.9 18 0.00062 33.9 9.6 129 107-242 210-355 (394)
58 2iw1_A Lipopolysaccharide core 67.0 25 0.00085 32.3 9.2 77 106-190 194-274 (374)
59 2f9f_A First mannosyl transfer 66.2 9.7 0.00033 32.1 5.7 48 107-160 22-70 (177)
60 3c48_A Predicted glycosyltrans 65.3 57 0.002 30.8 11.6 78 107-189 242-328 (438)
61 3okp_A GDP-mannose-dependent a 61.7 35 0.0012 31.4 9.2 49 107-159 197-248 (394)
62 1q0v_A Hydrophilic protein; ha 59.5 8.4 0.00029 30.8 3.7 23 220-242 51-73 (81)
63 2x6q_A Trehalose-synthase TRET 56.0 41 0.0014 31.7 8.7 84 106-189 229-318 (416)
64 1rzu_A Glycogen synthase 1; gl 53.1 67 0.0023 31.0 9.9 77 108-190 291-369 (485)
65 2d3g_P Ubiquitin interacting m 52.9 8.7 0.0003 24.4 2.2 17 225-241 5-21 (26)
66 2qzs_A Glycogen synthase; glyc 51.2 1E+02 0.0035 29.7 10.8 79 107-190 291-370 (485)
67 3fro_A GLGA glycogen synthase; 48.8 81 0.0028 29.3 9.4 53 109-163 252-310 (439)
68 2gek_A Phosphatidylinositol ma 48.7 66 0.0023 29.8 8.7 49 109-162 209-261 (406)
69 4grd_A N5-CAIR mutase, phospho 48.1 76 0.0026 28.5 8.5 65 106-174 11-75 (173)
70 3fni_A Putative diflavin flavo 48.0 29 0.00099 29.6 5.7 42 106-147 3-44 (159)
71 3ors_A N5-carboxyaminoimidazol 47.2 67 0.0023 28.6 8.0 62 108-173 4-65 (163)
72 3kuu_A Phosphoribosylaminoimid 47.0 66 0.0022 29.0 7.9 61 109-173 14-74 (174)
73 3u7r_A NADPH-dependent FMN red 46.9 38 0.0013 30.2 6.4 66 108-175 3-76 (190)
74 3oow_A Phosphoribosylaminoimid 46.8 79 0.0027 28.2 8.4 64 108-175 6-69 (166)
75 3d3k_A Enhancer of mRNA-decapp 46.3 58 0.002 30.5 7.9 39 108-148 86-124 (259)
76 1o4v_A Phosphoribosylaminoimid 46.1 82 0.0028 28.6 8.5 67 104-174 10-76 (183)
77 3k1y_A Oxidoreductase; structu 45.6 29 0.00098 30.9 5.4 44 104-147 8-59 (191)
78 1xmp_A PURE, phosphoribosylami 45.1 70 0.0024 28.7 7.8 66 105-174 9-74 (170)
79 2a5l_A Trp repressor binding p 44.3 22 0.00074 30.5 4.3 40 108-147 6-45 (200)
80 2iuy_A Avigt4, glycosyltransfe 43.7 26 0.0009 32.1 5.1 74 107-189 161-234 (342)
81 1jzt_A Hypothetical 27.5 kDa p 43.1 42 0.0014 31.2 6.4 56 90-147 36-96 (246)
82 1ydg_A Trp repressor binding p 42.6 26 0.0009 30.5 4.6 40 108-147 7-46 (211)
83 1f4p_A Flavodoxin; electron tr 42.2 21 0.00073 29.2 3.8 40 108-147 1-40 (147)
84 3f6r_A Flavodoxin; FMN binding 42.2 25 0.00085 28.8 4.2 40 108-147 2-41 (148)
85 3rg8_A Phosphoribosylaminoimid 42.1 1E+02 0.0035 27.3 8.3 52 109-164 4-55 (159)
86 3d3j_A Enhancer of mRNA-decapp 41.9 37 0.0013 32.7 5.9 39 107-147 132-170 (306)
87 3hly_A Flavodoxin-like domain; 41.5 27 0.00094 29.6 4.5 41 108-148 1-41 (161)
88 2db7_A Hairy/enhancer-OF-split 41.5 22 0.00074 27.0 3.3 27 357-383 31-57 (64)
89 3qbr_A SJA, sjchgc06286 protei 40.9 11 0.00036 34.3 1.8 30 352-382 36-66 (179)
90 1u11_A PURE (N5-carboxyaminoim 39.3 99 0.0034 28.0 7.9 63 108-174 22-84 (182)
91 2bfw_A GLGA glycogen synthase; 39.3 1.6E+02 0.0055 24.3 12.1 53 108-162 36-94 (200)
92 3lp6_A Phosphoribosylaminoimid 39.0 65 0.0022 29.0 6.6 51 109-163 9-59 (174)
93 2amj_A Modulator of drug activ 38.9 42 0.0014 29.7 5.4 45 104-148 9-59 (204)
94 8abp_A L-arabinose-binding pro 38.5 1.5E+02 0.0051 26.3 9.2 113 23-147 108-234 (306)
95 2o8n_A APOA-I binding protein; 37.7 57 0.002 30.9 6.4 55 90-146 59-116 (265)
96 3b6i_A Flavoprotein WRBA; flav 37.6 34 0.0012 29.2 4.5 40 108-147 2-42 (198)
97 2llw_A Heat shock protein STI1 35.8 26 0.00087 27.0 3.0 52 319-382 6-62 (71)
98 3trh_A Phosphoribosylaminoimid 34.1 1.5E+02 0.0051 26.5 8.1 50 109-162 8-57 (169)
99 4b4k_A N5-carboxyaminoimidazol 34.0 2.1E+02 0.0071 25.9 9.1 60 110-173 25-84 (181)
100 2kln_A Probable sulphate-trans 33.8 1.3E+02 0.0044 24.1 7.3 41 108-148 48-92 (130)
101 3tem_A Ribosyldihydronicotinam 33.7 45 0.0015 30.3 4.8 41 107-147 1-43 (228)
102 2lnd_A De novo designed protei 32.9 97 0.0033 25.0 6.0 56 104-163 48-103 (112)
103 2q62_A ARSH; alpha/beta, flavo 32.9 48 0.0016 30.7 5.0 69 105-175 32-107 (247)
104 2ki0_A DS119; beta-alpha-beta, 32.0 22 0.00077 23.6 1.8 21 121-141 13-33 (36)
105 2vzf_A NADH-dependent FMN redu 31.5 45 0.0015 29.0 4.3 40 108-147 3-45 (197)
106 3ced_A Methionine import ATP-b 31.4 92 0.0032 24.7 5.8 25 121-145 74-98 (98)
107 3c8f_A Pyruvate formate-lyase 31.2 61 0.0021 28.1 5.1 52 109-161 71-122 (245)
108 4b4t_W RPN10, 26S proteasome r 31.1 10 0.00035 36.1 0.0 18 320-337 222-239 (268)
109 2ark_A Flavodoxin; FMN, struct 30.6 55 0.0019 28.1 4.7 40 108-147 5-45 (188)
110 3gff_A IROE-like serine hydrol 29.9 3.6E+02 0.012 25.4 11.0 19 3-23 74-92 (331)
111 2wte_A CSA3; antiviral protein 29.8 3E+02 0.01 25.3 9.8 75 104-180 31-107 (244)
112 2fzv_A Putative arsenical resi 29.2 54 0.0018 31.2 4.7 68 106-175 57-132 (279)
113 3hr4_A Nitric oxide synthase, 28.6 53 0.0018 30.2 4.4 59 87-148 22-80 (219)
114 2zki_A 199AA long hypothetical 28.1 52 0.0018 28.1 4.1 39 108-147 5-43 (199)
115 4f8x_A Endo-1,4-beta-xylanase; 26.9 1.2E+02 0.0043 29.4 7.0 62 83-147 151-215 (335)
116 2lta_A De novo designed protei 32.6 14 0.00047 29.9 0.0 48 108-163 3-50 (110)
117 3sc4_A Short chain dehydrogena 26.4 1.3E+02 0.0046 27.3 6.8 70 85-158 123-208 (285)
118 3oy2_A Glycosyltransferase B73 26.4 93 0.0032 29.1 5.8 57 107-163 183-244 (413)
119 3rss_A Putative uncharacterize 25.8 95 0.0032 31.9 6.1 55 90-147 36-90 (502)
120 2hna_A Protein MIOC, flavodoxi 25.4 79 0.0027 25.8 4.6 35 109-143 3-37 (147)
121 1ur4_A Galactanase; hydrolase, 25.3 3.6E+02 0.012 26.7 10.1 63 83-151 84-168 (399)
122 3hp4_A GDSL-esterase; psychrot 25.3 2.3E+02 0.008 23.0 7.6 67 108-176 3-75 (185)
123 5nul_A Flavodoxin; electron tr 24.8 42 0.0014 27.0 2.7 39 110-148 1-39 (138)
124 1t5b_A Acyl carrier protein ph 24.3 65 0.0022 27.3 4.0 40 108-147 2-46 (201)
125 1bvy_F Protein (cytochrome P45 24.0 47 0.0016 29.4 3.1 41 106-146 20-60 (191)
126 3mcu_A Dipicolinate synthase, 23.9 65 0.0022 29.4 4.0 36 107-143 5-40 (207)
127 2fz5_A Flavodoxin; alpha/beta 23.9 74 0.0025 25.1 4.0 38 110-147 2-39 (137)
128 3vue_A GBSS-I, granule-bound s 23.5 1.1E+02 0.0037 31.2 6.1 55 106-162 325-380 (536)
129 3lwa_A Secreted thiol-disulfid 23.2 1.8E+02 0.0061 24.0 6.5 55 108-163 60-122 (183)
130 1ufo_A Hypothetical protein TT 22.5 3.1E+02 0.011 22.2 8.2 47 132-178 167-217 (238)
131 3v5n_A Oxidoreductase; structu 22.4 2.2E+02 0.0076 27.7 7.9 85 65-160 93-184 (417)
132 3can_A Pyruvate-formate lyase- 22.1 92 0.0031 26.3 4.5 49 110-161 6-54 (182)
133 3fzy_A RTX toxin RTXA; RTXA to 22.1 2.3E+02 0.0078 26.6 7.4 45 104-148 154-200 (234)
134 3r6w_A FMN-dependent NADH-azor 21.8 88 0.003 27.3 4.4 40 108-147 2-46 (212)
135 2f6i_A ATP-dependent CLP prote 21.8 1.5E+02 0.0052 26.8 6.1 61 79-146 42-106 (215)
136 3k9c_A Transcriptional regulat 21.7 4.1E+02 0.014 23.4 9.0 119 7-148 91-224 (289)
137 3qjg_A Epidermin biosynthesis 21.5 86 0.003 27.8 4.3 34 108-143 6-39 (175)
138 2qip_A Protein of unknown func 21.5 1.4E+02 0.0048 25.4 5.6 24 123-146 119-143 (165)
139 3p2l_A ATP-dependent CLP prote 21.4 1.4E+02 0.0049 26.8 5.8 64 79-146 33-98 (201)
140 2x6q_A Trehalose-synthase TRET 21.4 1.1E+02 0.0037 28.7 5.2 42 106-147 39-81 (416)
141 4g81_D Putative hexonate dehyd 21.2 73 0.0025 29.6 3.9 63 85-148 116-193 (255)
142 3e03_A Short chain dehydrogena 21.0 1.8E+02 0.0063 26.1 6.5 60 85-146 120-196 (274)
143 3zqu_A Probable aromatic acid 20.9 1.1E+02 0.0038 27.9 4.9 35 107-143 4-38 (209)
144 1o2d_A Alcohol dehydrogenase, 20.9 3.1E+02 0.011 26.4 8.5 38 125-163 58-95 (371)
145 3qwd_A ATP-dependent CLP prote 20.7 1.6E+02 0.0055 26.5 6.0 64 79-146 30-95 (203)
146 2pd2_A Hypothetical protein ST 20.6 1.6E+02 0.0055 22.8 5.3 55 86-144 12-69 (108)
147 3ju3_A Probable 2-oxoacid ferr 20.5 2.6E+02 0.009 22.5 6.8 39 122-160 25-63 (118)
148 1t0i_A YLR011WP; FMN binding p 20.5 1.2E+02 0.004 25.8 4.8 39 108-146 1-47 (191)
149 1y7p_A Hypothetical protein AF 20.5 1.7E+02 0.0058 27.3 6.1 38 104-144 142-179 (223)
150 2xci_A KDO-transferase, 3-deox 20.4 2E+02 0.0068 27.3 6.9 50 109-162 197-248 (374)
No 1
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-78 Score=582.83 Aligned_cols=250 Identities=49% Similarity=0.771 Sum_probs=190.0
Q ss_pred CCcceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc
Q 016164 1 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE 80 (394)
Q Consensus 1 m~lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~ 80 (394)
|||||||||||+|.||+++||.||||+++++|++.|++.|+++||+++||||+|+|+.++|++|||+|+.+|+.+|+.++
T Consensus 1 m~lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l~ 80 (268)
T 4b4t_W 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQ 80 (268)
T ss_dssp CCCEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTCC
T ss_pred CCceeEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
++|.|+|.+||++|+++||||+++++++|||||++|+.+++++++++++|++||+||+|+|||||... +|.++|++|++
T Consensus 81 ~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~-~n~~kLe~l~~ 159 (268)
T 4b4t_W 81 IEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIE-QNTELLDEFIA 159 (268)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCC-SSCCHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCc-cchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HhcC--CCCcEEEEcCCCCchhhhhhhcCccccCCCCCCCchhHhHHHhhhcCCCCCccCCCCCCCHHHHHHHHhcHHHH
Q 016164 161 AVNN--NDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEE 238 (394)
Q Consensus 161 ~vn~--~~~S~~v~vp~g~~lLsD~l~sspi~~g~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~Alr~SlEEe 238 (394)
++|+ +++||||+||||+++|+|.|++|||+.|++.++.+++++++|++++++++|||||||++|||||||||||||||
T Consensus 160 ~~Ng~~~~~s~~v~v~~g~~~lsd~l~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~dpela~alr~s~eee 239 (268)
T 4b4t_W 160 AVNNPQEETSHLLTVTPGPRLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEE 239 (268)
T ss_dssp HHCSSTTTSCEEEEECCCSSCHHHHHHTSTTSCCCCC-------------------------------------------
T ss_pred HhcCCCCCceeEEEeCCCCccHHHHHhcCCccccCCccccccccccccccccCCcccccCCCCCCCHHHHHHHHHhHHHH
Confidence 9998 57899999999999999999999999998743333223333445566678999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 016164 239 RARQEAAAKRAAE 251 (394)
Q Consensus 239 ~~rq~~~~~~~~~ 251 (394)
|+|||++++++.+
T Consensus 240 ~~rq~~~~~~~~~ 252 (268)
T 4b4t_W 240 QQRQERLRQQQQQ 252 (268)
T ss_dssp -------------
T ss_pred HHHHHHHhhcccc
Confidence 9999999877654
No 2
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-46 Score=339.58 Aligned_cols=189 Identities=50% Similarity=0.808 Sum_probs=180.1
Q ss_pred CcceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc
Q 016164 2 VLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI 81 (394)
Q Consensus 2 ~lEa~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~ 81 (394)
|+|++|||||+|.||+++||.||||+++++++..|+..|+++||+++||||+|+|+.+++++|||+|+.+++.+|+.+.+
T Consensus 1 ~~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~ 80 (192)
T 2x5n_A 1 VLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPV 80 (192)
T ss_dssp CCEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCCC
T ss_pred CceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999999999999999999999997689999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (394)
+|++++++||++|...|||++++.+++|||||++++.+++++++.++++++|++||+|+|||||++. .|.+ |+.|+++
T Consensus 81 ~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~-~~~~-l~~la~~ 158 (192)
T 2x5n_A 81 RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ-NESA-LQHFIDA 158 (192)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC----CH-HHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCC-ccHH-HHHHHHh
Confidence 9999999999999999999887888999999999998888999999999999999999999999998 7888 9999999
Q ss_pred hcCCCCcEEEEcCCCCchhhhhhhcCccccC
Q 016164 162 VNNNDSSHLVHVPPGPNALSDVLLSTPIFTG 192 (394)
Q Consensus 162 vn~~~~S~~v~vp~g~~lLsD~l~sspi~~g 192 (394)
+|++++|||++||+++++|+|.|++|||+.|
T Consensus 159 ~n~~~~s~~~~~~~~~~~l~d~~~~s~~~~~ 189 (192)
T 2x5n_A 159 ANSSDSCHLVSIPPSPQLLSDLVNQSPIGQG 189 (192)
T ss_dssp HCSTTCCEEEEECCCSSCHHHHHHTSTTSCC
T ss_pred ccCCCceEEEEecCcchhHHHHHhcCccccc
Confidence 9999999999999999999999999999985
No 3
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=99.93 E-value=9.1e-27 Score=201.60 Aligned_cols=103 Identities=42% Similarity=0.556 Sum_probs=74.1
Q ss_pred hhcCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhHhhhcccccCCccccccccCCCCCCcccccccc
Q 016164 208 AASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKK 287 (394)
Q Consensus 208 ~~~~~~~~efgvDp~~DPELa~Alr~SlEEe~~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (394)
.+.|+++|+|||||++||||||||||||||||+||+++++++.+.++. .. + .++ . .
T Consensus 23 ~~~~~~~fefgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~~~~e~saa----~~----~-~a~--------~-------~ 78 (132)
T 1yx4_A 23 LGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAA----EA----G-IAT--------T-------G 78 (132)
T ss_dssp SCCCSSSCCSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SS----S-SSC--------C-------C
T ss_pred cccCccccccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHHhhcccccc----cc----c-ccc--------c-------C
Confidence 345667899999999999999999999999999999998876544321 00 0 000 0 0
Q ss_pred cCCCchHHHHHHHHhcCCCCCCCCCCCCCCCCCCChHHHHHHHHhccccCC
Q 016164 288 TTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGT 338 (394)
Q Consensus 288 ~~~~e~~~L~~Al~~S~~~~~~~~~~~~~~~~~~e~~~ia~A~~ms~~~~~ 338 (394)
+...++++|++++.++-.... . ..+.+.|+||++|+||||||||+..
T Consensus 79 ~~~~eeamL~~a~~~~~~~~~---~-~~d~~~MtEEeqLa~ALqMSMQe~~ 125 (132)
T 1yx4_A 79 TEDSDDALLKMTISQQEFGRT---G-LPDLSSMTEEEQIAYAMQMSLQGAE 125 (132)
T ss_dssp CCSCHHHHHHHHHHHHHHHHS---S-CCCSTTSCHHHHHHHHHHHSSSSCS
T ss_pred CcccHHHHHHHhhcccccCCC---C-CCchhhCChHHHHHHHHHhcccccc
Confidence 124577899999876632111 1 1235789999999999999999764
No 4
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.85 E-value=7.3e-21 Score=199.11 Aligned_cols=161 Identities=16% Similarity=0.265 Sum_probs=139.5
Q ss_pred ceEEEEEeCChhhhCCCC-CCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc-------------cEEEECCCCCH
Q 016164 4 EATLICIDNSEWMRNGDY-APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------VRVLVTPTSDL 69 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD~-~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~-------------a~vLvtlT~D~ 69 (394)
|++|||||+|.||.++|+ .||||+++++++..|+..|...+|..+||||+|++.. ..++.+++...
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~~~ 87 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPD 87 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCCCC
Confidence 999999999999999999 8999999999999999999999999999999999864 23677777777
Q ss_pred HHHHHHhcC-cccc-CcccHHHHHHHHHHHhhhc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEE-EEEe
Q 016164 70 GKILACMHG-LEIG-GELNLAAGIQVAQLALKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALD-IVNF 144 (394)
Q Consensus 70 ~kilsaL~~-l~~~-G~~sL~~gL~iA~lALkhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~Vd-iI~f 144 (394)
.+++..|+. +.++ ++++|..||.+|...|+++ ..+..++|||||+++....+..++.++++.|+++||.|+ ||||
T Consensus 88 ~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~~gI~i~~vig~ 167 (565)
T 1jey_B 88 FDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPF 167 (565)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESS
T ss_pred HHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecc
Confidence 788899998 7766 7899999999999999997 334467999999977776667789999999999999999 9999
Q ss_pred CCCCC------------------------------CcHHHHHHHHHHhcC
Q 016164 145 GEDDE------------------------------GNTEKLEALLAAVNN 164 (394)
Q Consensus 145 G~e~~------------------------------~n~~~l~~~~~~vn~ 164 (394)
|.... .|...|+.|++.+++
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G 217 (565)
T 1jey_B 168 SLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEG 217 (565)
T ss_dssp CCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCC
Confidence 87520 245679999999975
No 5
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=3.5e-19 Score=160.61 Aligned_cols=163 Identities=15% Similarity=0.185 Sum_probs=137.5
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccc---
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEI--- 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~--- 81 (394)
.++||||.|.||...|+.|+||+.++.++..|+..+ |..+||||+|.+. +.+++++|.|+..+...|+.+.+
T Consensus 13 ~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~----~~~~v~lv~F~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~ 87 (218)
T 3ibs_A 13 EVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDEL----DNDKVGMIVFAGD-AFTQLPITSDYISAKMFLESISPSLI 87 (218)
T ss_dssp EEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTC----SSCEEEEEEESSS-EEEEEEEESCHHHHHHHHHTCCGGGC
T ss_pred cEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhC----CCCeEEEEEECCC-ceEeCCCCCCHHHHHHHHHhcCcccC
Confidence 689999999999999999999999999999999863 5789999999987 79999999999999999999876
Q ss_pred -cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC------------
Q 016164 82 -GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD------------ 148 (394)
Q Consensus 82 -~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~------------ 148 (394)
.|.+++..||..|...|+++ +..++.||||+++..+.+ ++..+++.+++.+|+|++||||...
T Consensus 88 ~~g~T~l~~al~~a~~~l~~~--~~~~~~ivllTDG~~~~~--~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~ 163 (218)
T 3ibs_A 88 SKQGTAIGEAINLATRSFTPQ--EGVGRAIIVITDGENHEG--GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDY 163 (218)
T ss_dssp CSCSCCHHHHHHHHHTTSCSC--SSCCEEEEEEECCTTCCS--CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCB
T ss_pred CCCCCcHHHHHHHHHHHHhhC--CCCCcEEEEEcCCCCCCC--cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCce
Confidence 68999999999999888764 457788888888876554 6889999999999999999999852
Q ss_pred -----------CCcHHHHHHHHHHhcCCCCcEEEEcCCCCchh
Q 016164 149 -----------EGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 180 (394)
Q Consensus 149 -----------~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lL 180 (394)
..|...|+.+++.++ .+|+.+......+
T Consensus 164 ~~~~~g~~~~~~~~~~~L~~iA~~~g----G~~~~~~~~~~~~ 202 (218)
T 3ibs_A 164 RRDREGNVIVTRLNEGMCQEIAKDGK----GIYVRVDNSNSAQ 202 (218)
T ss_dssp CBCTTSCBCEECCCHHHHHHHHHHTE----EEEEEECSSSHHH
T ss_pred eEcCCCCEeEecCCHHHHHHHHHhcC----CEEEECCCChHHH
Confidence 157889999998774 3455555533334
No 6
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.68 E-value=2.2e-15 Score=136.15 Aligned_cols=160 Identities=9% Similarity=0.083 Sum_probs=125.8
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcccc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEIG 82 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~D~~kilsaL~~l~~~ 82 (394)
.++|+||.|.||. +.+|+.+++++..|+..+.-..+..+||||+|++. +.+..+++ .++..+..+|+.+...
T Consensus 15 divfvlD~SgSm~-----~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 88 (202)
T 1ijb_A 15 DLVFLLDGSSRLS-----EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDG-SHAYIGLKDRKRPSELRRIASQVKYA 88 (202)
T ss_dssp EEEEEEECBTTSC-----HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSS-EEEEECTTCCCCHHHHHHHHHTCCCC
T ss_pred cEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCC-ceEEEecCCCCCHHHHHHHHHhCcCC
Confidence 5899999999996 46899999999999997654455789999999987 68889988 7899999999999764
Q ss_pred C--cccHHHHHHHHHHH-hhhcCCCCCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 83 G--ELNLAAGIQVAQLA-LKHRQNKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 83 G--~~sL~~gL~iA~lA-Lkhr~~k~~~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
| .+++..||+.|... |+....++.++.||||+++..+. ...++...++.||+.+|.|++||||... |.+.|+.|
T Consensus 89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~~--~~~~L~~i 166 (202)
T 1ijb_A 89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHA--NLKQIRLI 166 (202)
T ss_dssp CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTS--CHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCcC--CHHHHHHH
Confidence 4 39999999999754 44322234667788888877653 2457889999999999999999999864 67889999
Q ss_pred HHHhcCCCCcEEEEcCC
Q 016164 159 LAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 159 ~~~vn~~~~S~~v~vp~ 175 (394)
+... .+.|+..+..
T Consensus 167 A~~~---~~~~~~~~~~ 180 (202)
T 1ijb_A 167 EKQA---PENKAFVLSS 180 (202)
T ss_dssp HHHC---TTCCCEEESS
T ss_pred hCCC---CcccEEEeCC
Confidence 8543 2345555554
No 7
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.67 E-value=1.7e-15 Score=136.25 Aligned_cols=162 Identities=12% Similarity=0.163 Sum_probs=126.4
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE----CCCCCHHHHHHHhcCcc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV----TPTSDLGKILACMHGLE 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLv----tlT~D~~kilsaL~~l~ 80 (394)
.++||||.|.||.. ++|+.+++++..|+..+...++..+||||+|++. +.+++ ++|.|+..+..+|..+.
T Consensus 17 div~vlD~SgSM~~-----~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~ 90 (223)
T 1q0p_A 17 NIYLVLDGSDSIGA-----SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEIN 90 (223)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHTCC
T ss_pred eEEEEEeCCCCCch-----HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCc-cceeeccccCCCCCHHHHHHHHHhcc
Confidence 58999999999975 3599999999999998887888899999999987 68888 56668889999999987
Q ss_pred c-----cCcccHHHHHHHHHHHhhhcCC------CCCCeEEEEEecCCCCC--ChhHHHHHHHH----------HHhCCc
Q 016164 81 I-----GGELNLAAGIQVAQLALKHRQN------KKQQQRIIVFVGSPIKH--EKKVLEMIGRK----------LKKNSV 137 (394)
Q Consensus 81 ~-----~G~~sL~~gL~iA~lALkhr~~------k~~~~RIVlFvgSp~~~--d~~~l~~~akk----------LKknnI 137 (394)
+ +|.+++..||+.|...|..... +..++.||||+++..+. ++..+.+.++. +++.+|
T Consensus 91 ~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (223)
T 1q0p_A 91 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 170 (223)
T ss_dssp TTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGE
T ss_pred cccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCc
Confidence 4 6899999999999999875322 23556678888887664 56666666644 467899
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 138 ALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 138 ~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
.|++||||... +.+.|+.++...+ +..||+.+...
T Consensus 171 ~i~~igvG~~~--~~~~L~~iA~~~~--G~~~~~~~~~~ 205 (223)
T 1q0p_A 171 DVYVFGVGPLV--NQVNINALASKKD--NEQHVFKVKDM 205 (223)
T ss_dssp EEEEEECSSCC--CHHHHHHHSCCCT--TCCCEEETTC-
T ss_pred EEEEEEecCcC--CHHHHHHHhcCCC--CCceEEEcCCH
Confidence 99999999865 5678888864321 12377777654
No 8
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.66 E-value=3.7e-15 Score=132.41 Aligned_cols=157 Identities=13% Similarity=0.188 Sum_probs=123.9
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECC--CCCHHHHHHHhcCccc-
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTP--TSDLGKILACMHGLEI- 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtl--T~D~~kilsaL~~l~~- 81 (394)
.++|+||.|.||. ++||+.++.++..|+..+--.+...+||||+|++. +.+..++ +.|+..+..+|..+..
T Consensus 7 div~vlD~SgSm~-----~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 80 (189)
T 1atz_A 7 DVILLLDGSSSFP-----ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSI-TTIDVPWNVVPEKAHLLSLVDVMQRE 80 (189)
T ss_dssp EEEEEEECSSSSC-----HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS-EEEEECTTCCCCHHHHHHHHHTCCCC
T ss_pred eEEEEEeCCCCCC-----hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCc-ceEEEecCCCCCHHHHHHHHHhCcCC
Confidence 5899999999996 48999999999999998643445689999999876 6888888 8999999999999975
Q ss_pred cCcccHHHHHHHHHHHhhhcC---CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHRQ---NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr~---~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
+|.+++..||..|...|.... .+..++++|||+++..+. ++...++.+++.+|+|++||+|... |.+.|+.+
T Consensus 81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~---~~~~~~~~~~~~gi~v~~igvG~~~--~~~~L~~i 155 (189)
T 1atz_A 81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVD---SVDAAADAARSNRVTVFPIGIGDRY--DAAQLRIL 155 (189)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSS---CCHHHHHHHHHTTEEEEEEEESSSS--CHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCc---hHHHHHHHHHHCCCEEEEEEcCCcC--CHHHHHHH
Confidence 789999999999988876521 122345567776554333 3678899999999999999999864 56788888
Q ss_pred HHHhcCCCCcEEEEcCC
Q 016164 159 LAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 159 ~~~vn~~~~S~~v~vp~ 175 (394)
.... .+.|+..+..
T Consensus 156 A~~~---~~~~~~~~~~ 169 (189)
T 1atz_A 156 AGPA---GDSNVVKLQR 169 (189)
T ss_dssp TGGG---GGGGCEEESS
T ss_pred HCCC---cccCEEEecC
Confidence 7443 3457766654
No 9
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.66 E-value=8.7e-16 Score=134.38 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=120.9
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCc---cc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGL---EI 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l---~~ 81 (394)
.++|+||.|.||...++ +|+...+.++ ..+.. |..+||||+|.+. +.++.++|.++..+...|+.+ .+
T Consensus 8 dvv~vlD~SgSM~~~~~--~~~~~~~~~~----~~~~~--~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~ 78 (182)
T 1shu_X 8 DLYFVLDKSGSVANNWI--EIYNFVQQLA----ERFVS--PEMRLSFIVFSSQ-ATIILPLTGDRGKISKGLEDLKRVSP 78 (182)
T ss_dssp EEEEEEECSGGGGGGHH--HHHHHHHHHH----HHCCC--TTEEEEEEEESSS-EEEEEEEECCHHHHHHHHHHHHTCCC
T ss_pred eEEEEEECCCCcccCHH--HHHHHHHHHH----HHhcC--CCceEEEEEeCCC-ceEEECCCCCHHHHHHHHHhcccCCC
Confidence 58999999999985332 3545555444 44433 7899999999887 689999999999888777765 48
Q ss_pred cCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCC-hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE-KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d-~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
+|++++..||..|...|+++..+..++.||+|+++..+.+ +..+...++.+++.+|.|++||||. .+...|+.+..
T Consensus 79 ~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~---~~~~~L~~ia~ 155 (182)
T 1shu_X 79 VGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD---FEQAQLERIAD 155 (182)
T ss_dssp CSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSS---CCHHHHHHHSS
T ss_pred CCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCc---CCHHHHHHHhC
Confidence 9999999999999999987544557788888888876553 3456788999999999999999993 35677888764
Q ss_pred HhcCCCCcEEEEcCCCCchhhhhh
Q 016164 161 AVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 161 ~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
.. .++..+..+..-|.+++
T Consensus 156 ~~-----~~~~~~~~~~~~L~~~~ 174 (182)
T 1shu_X 156 SK-----EQVFPVKGGFQALKGII 174 (182)
T ss_dssp SG-----GGEEESSSTTHHHHHHH
T ss_pred CC-----CceEEccCCHHHHHHHH
Confidence 32 23444443333355543
No 10
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.64 E-value=5.7e-15 Score=130.76 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=111.9
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHHHHHHhcCcc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGKILACMHGLE 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~----D~~kilsaL~~l~ 80 (394)
.++|+||.|.||. +++|+.+++++..|+..+-..++..+||||+|++. +.+..+++. +...++..|..+.
T Consensus 19 divfvlD~SgSm~-----~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~-~~~~~~l~~~~~~~~~~~~~~i~~l~ 92 (178)
T 2xgg_A 19 DICFLIDSSGSIG-----IQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTD-VHLQWDLQSPNAVDKQLAAHAVLDMP 92 (178)
T ss_dssp EEEEEEECCTTTC-----HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS-EEEEECTTSGGGSCHHHHHHHHHHCC
T ss_pred eEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCc-eEEEEeCCCCCccCHHHHHHHHHhCC
Confidence 5899999999995 46899999999999998644456689999999987 688999987 7889999999987
Q ss_pred -ccCcccHHHHHHHHHHHhhhc---CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 81 -IGGELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 81 -~~G~~sL~~gL~iA~lALkhr---~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
.+|.+++..||+.|...|... ..+..++.||||+++..+. ..++...+++||+.+|.|++||||...
T Consensus 93 ~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~-~~~~~~~~~~l~~~gi~v~~igvG~~~ 163 (178)
T 2xgg_A 93 YKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS-DFRTVRAAKEIRELGGIVTVLAVGHYV 163 (178)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH-HHHHSHHHHHHHHTTCEEEEEECC---
T ss_pred CCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC-CccHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 789999999999998876421 1234677888888876553 456889999999999999999999986
No 11
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.63 E-value=5.5e-15 Score=139.77 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=127.9
Q ss_pred eEEEEEeCChhhhCCCCCCcHH-HHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC----HHHHHHHhcCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRF-QAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD----LGKILACMHGL 79 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl-~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D----~~kilsaL~~l 79 (394)
.++|+||.|.||... .| ...++++..|+..+.-.++..+||||+|++. +.++.+++.. ...++.+|..+
T Consensus 20 DivfvlD~SgSM~~~-----~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~~~~~i~~l 93 (266)
T 4hqo_A 20 DLYLLVDGSGSIGYP-----NWITKVIPMLNGLINSLSLSRDTINLYMNLFGSY-TTELIRLGSGQSIDKRQALSKVTEL 93 (266)
T ss_dssp EEEEEEECSTTTCHH-----HHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSS-EEEEECTTSHHHHCHHHHHHHHHHH
T ss_pred eEEEEEECCCCcChh-----HHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCC-cceEEecCCCCccCHHHHHHHHHHh
Confidence 479999999999643 45 4678999999998766678999999999988 7999999975 78889999988
Q ss_pred ----cccCcccHHHHHHHHHHHhhhc-CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHH
Q 016164 80 ----EIGGELNLAAGIQVAQLALKHR-QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK 154 (394)
Q Consensus 80 ----~~~G~~sL~~gL~iA~lALkhr-~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~ 154 (394)
.++|.+++..||+.|...|+.+ ..+..++.||||+++..+ ++.++...++.|++.||.|++||||... +.+.
T Consensus 94 ~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~-d~~~~~~~a~~l~~~gi~i~~iGiG~~~--~~~~ 170 (266)
T 4hqo_A 94 RKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPN-SKYRALEVANKLKQRNVRLAVIGIGQGI--NHQF 170 (266)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCS-CHHHHHHHHHHHHHTTCEEEEEECSSSC--CHHH
T ss_pred hhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCC-CchHHHHHHHHHHHCCCEEEEEecCccc--CHHH
Confidence 5789999999999998888764 224466777888777655 6788999999999999999999999965 5677
Q ss_pred HHHHHHHhcCCCCcEEEEcCC
Q 016164 155 LEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 155 l~~~~~~vn~~~~S~~v~vp~ 175 (394)
|+.+...-.++++.+++.+..
T Consensus 171 L~~iA~~~~~~g~~~~~~~~d 191 (266)
T 4hqo_A 171 NRLIAGCRPREPNCKFYSYAD 191 (266)
T ss_dssp HHHHHTCCTTCSSCTTEECSC
T ss_pred HHHhhCCCCCCCCCCeEEecC
Confidence 888874321122234455544
No 12
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.62 E-value=2.7e-15 Score=131.52 Aligned_cols=154 Identities=15% Similarity=0.184 Sum_probs=118.6
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCcc---c
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLE---I 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~---~ 81 (394)
.++|+||.|.||.. + |...+++++.++..+ ..|..+||||+|.+. +.++.++|.+...+..+|..+. +
T Consensus 9 div~vlD~SgSM~~-~-----~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~-~~~~~~l~~~~~~~~~~i~~l~~~~~ 79 (185)
T 3n2n_F 9 DLYFILDKSGSVLH-H-----WNEIYYFVEQLAHKF--ISPQLRMSFIVFSTR-GTTLMKLTEDREQIRQGLEELQKVLP 79 (185)
T ss_dssp EEEEEEECSGGGGG-G-----HHHHHHHHHHHHHHC--CCTTEEEEEEEESSS-EEEEEEEECCHHHHHHHHHHHHTCCC
T ss_pred eEEEEEeCCCChhh-h-----HHHHHHHHHHHHHHh--CCCCcEEEEEEEecC-ceEEeccCCCHHHHHHHHHHHhhhcC
Confidence 58999999999985 2 455566677777766 347899999999987 7999999999999988888764 6
Q ss_pred cCcccHHHHHHHHHHHhhh--cCCCCCCeEEEEEecCCCCCChh-HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKH--RQNKKQQQRIIVFVGSPIKHEKK-VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 158 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkh--r~~k~~~~RIVlFvgSp~~~d~~-~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (394)
+|.+++..||+.|...|.. +..+..++.||+|+++..+.+.. ++...++.+++.+|.|++|||| . .|...|+.+
T Consensus 80 ~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg--~-~~~~~L~~i 156 (185)
T 3n2n_F 80 GGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVK--D-FNETQLARI 156 (185)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECS--S-CCHHHHTTT
T ss_pred CCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEec--c-CCHHHHHHH
Confidence 8999999999999887743 22233567777777777654332 5578999999999999999999 3 466777777
Q ss_pred HHHhcCCCCcEEEEcCC
Q 016164 159 LAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 159 ~~~vn~~~~S~~v~vp~ 175 (394)
.. ...|+..+..
T Consensus 157 A~-----~~~~~~~~~~ 168 (185)
T 3n2n_F 157 AD-----SKDHVFPVND 168 (185)
T ss_dssp SS-----SGGGEEEHHH
T ss_pred hC-----CCCCeEEecc
Confidence 62 2356666654
No 13
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=99.62 E-value=4.8e-15 Score=156.69 Aligned_cols=145 Identities=15% Similarity=0.183 Sum_probs=115.8
Q ss_pred ceEEEEEeCChhhhCCC--CCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCcc---------EEEECCC---CCH
Q 016164 4 EATLICIDNSEWMRNGD--YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGV---------RVLVTPT---SDL 69 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD--~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a---------~vLvtlT---~D~ 69 (394)
|+||||||+|.||.+.| ..||||+++++++..|++.+.-.+|...||||.|++... .++.+++ .+.
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ 115 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKR 115 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHH
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHH
Confidence 78999999999999999 589999999999999999998899999999999999852 4555554 222
Q ss_pred HHHHHHhcC----------ccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCCh-----hHHHHHHHHHHh
Q 016164 70 GKILACMHG----------LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK-----KVLEMIGRKLKK 134 (394)
Q Consensus 70 ~kilsaL~~----------l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~-----~~l~~~akkLKk 134 (394)
-+.+..|.. +..+.+++|..||.+|...|+++..+...+|||||+++...... ..+..+|+.|++
T Consensus 116 ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~ 195 (609)
T 1jey_A 116 ILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRD 195 (609)
T ss_dssp HHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 223333321 12235799999999999999986444458999999987665422 378899999999
Q ss_pred CCceEEEEEeCCCC
Q 016164 135 NSVALDIVNFGEDD 148 (394)
Q Consensus 135 nnI~VdiI~fG~e~ 148 (394)
.||.|++||+|...
T Consensus 196 ~gI~i~~igig~~~ 209 (609)
T 1jey_A 196 TGIFLDLMHLKKPG 209 (609)
T ss_dssp HTEEEEEEEBCCTT
T ss_pred cCcEEEEEecCCCC
Confidence 99999999999864
No 14
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.61 E-value=2.4e-15 Score=133.92 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=123.1
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCcc-c
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGLE-I 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~--D~~kilsaL~~l~-~ 81 (394)
.++|+||.|.||. +++|+.+++++..|+..+. ++..+||||+|++. +.++.+++. +...++.+|..+. .
T Consensus 7 div~vlD~SgSm~-----~~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 78 (194)
T 1mf7_A 7 DIAFLIDGSGSII-----PHDFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEE-FRIHFTFKEFQNNPNPRSLVKPITQL 78 (194)
T ss_dssp EEEEEEECCTTSC-----HHHHHHHHHHHHHHHHHHC--CTTEEEEEEEESSS-EEEEECHHHHHHSCCHHHHHTTCCCC
T ss_pred eEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHhcC--CCCeEEEEEEecCC-ceEEEecCCcCCHHHHHHHHHhCcCC
Confidence 6899999999996 4589999999999999865 66789999999887 688898886 4567888899987 4
Q ss_pred cCcccHHHHHHHHHHHh-hhc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCC---cHHHH
Q 016164 82 GGELNLAAGIQVAQLAL-KHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEG---NTEKL 155 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lAL-khr--~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~---n~~~l 155 (394)
+|.+++..||+.|...| ... ..++.++.||||+++..+.++..+...++.+|+.+|+|++||||... . +.+.|
T Consensus 79 ~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~-~~~~~~~~L 157 (194)
T 1mf7_A 79 LGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAF-RSEKSRQEL 157 (194)
T ss_dssp CSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGG-CSHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccc-cccccHHHH
Confidence 89999999999998655 321 11235677888888877645656677889999999999999999875 3 25666
Q ss_pred HHHHHHhcCCCCcEEEEcCCC
Q 016164 156 EALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 156 ~~~~~~vn~~~~S~~v~vp~g 176 (394)
+.++.. ..+.|+..+..-
T Consensus 158 ~~iA~~---~~~~~~~~~~~~ 175 (194)
T 1mf7_A 158 NTIASK---PPRDHVFQVNNF 175 (194)
T ss_dssp HHHSCS---SHHHHEEEESSG
T ss_pred HHHhCC---CCcccEEEeCCH
Confidence 666522 123577777653
No 15
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.61 E-value=3.8e-14 Score=145.48 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=123.2
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--------CCHHHHHHHh
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--------SDLGKILACM 76 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--------~D~~kilsaL 76 (394)
.++||||.|.||. +.++||+..+.++..|+.. ..|..+||||+|.+. +.++.++| .++..++..|
T Consensus 79 dvv~VLD~SGSM~---~~~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~-a~~~~p~t~~l~~~~~~~~~~l~~~I 151 (464)
T 4fx5_A 79 VEVIIIDCSGSMD---YPRTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEG-ARVVYPTGGQLLRADYQSRAAAKEAV 151 (464)
T ss_dssp EEEEEEECCGGGG---TTTHHHHHHHHHHHHHHHH---SCTTCEEEEEEESSS-EEEEESSSSSCEECSHHHHHHHHHHH
T ss_pred eEEEEEEcCcccC---CCCchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCc-eEEEecCCcccccCCHHHHHHHHHHH
Confidence 5899999999997 4589999999999999997 558889999999987 69999987 5788899999
Q ss_pred cCccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016164 77 HGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (394)
Q Consensus 77 ~~l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l 155 (394)
..+.++|++++..||..|...|+.+ +...+.||+|+++..+. ++..+....+ ..+.+|+|++||||... |...|
T Consensus 152 ~~L~~~GgT~l~~aL~~A~~~l~~~--~~~~~~IILLTDG~~~~~~~~~l~~~~~-a~~~~i~i~tiGiG~~~--d~~~L 226 (464)
T 4fx5_A 152 GRLHANGGTAMGRWLAQAGRIFDTA--PSAIKHAILLTDGKDESETPADLARAIQ-SSIGNFTADCRGIGEDW--EPKEL 226 (464)
T ss_dssp HTCCCCSCCCHHHHHHHHHHHHTTC--TTSEEEEEEEESSCCTTSCHHHHHHHHH-HHTTTCEEEEEEESSSS--CHHHH
T ss_pred HcCCCCCCCcHHHHHHHHHHHHhcC--CCCCCEEEEEcCCCCCCCChHHHHHHHH-HhcCCCeEEEEEeCCcc--CHHHH
Confidence 9999999999999999999999874 34668888888887664 4445544443 45789999999999875 67899
Q ss_pred HHHHHHhc
Q 016164 156 EALLAAVN 163 (394)
Q Consensus 156 ~~~~~~vn 163 (394)
+.+++..+
T Consensus 227 ~~IA~~tg 234 (464)
T 4fx5_A 227 RKIADALL 234 (464)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 99997663
No 16
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.59 E-value=6e-14 Score=128.16 Aligned_cols=162 Identities=12% Similarity=0.157 Sum_probs=119.3
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcccc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEIG 82 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~D~~kilsaL~~l~~~ 82 (394)
.++|+||.|.||.+ |+.+++++..|+..+.-.++..+||||+|++. +.++.+++ .+...++.+|+.+...
T Consensus 24 div~vlD~SgSM~~-------~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 95 (223)
T 2b2x_A 24 DIVIVLDGSNSIYP-------WESVIAFLNDLLKRMDIGPKQTQVGIVQYGEN-VTHEFNLNKYSSTEEVLVAANKIVQR 95 (223)
T ss_dssp EEEEEEECSTTCCC-------HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSS-EEEEECTTTCCSHHHHHHHHTTCCCC
T ss_pred eEEEEEECCCChhh-------HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCC-ccEEEecCCCCCHHHHHHHHHhhhcc
Confidence 47999999999983 88999999999987655678999999999887 68888886 3667889999988754
Q ss_pred -C-cccHHHHHHHHHHH-hhhc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCc----HH
Q 016164 83 -G-ELNLAAGIQVAQLA-LKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGN----TE 153 (394)
Q Consensus 83 -G-~~sL~~gL~iA~lA-Lkhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n----~~ 153 (394)
| .+++..||+.|... |+.. ..+..++.||||+++..+. ..++...++.+|+.+|.|++||||... +. ..
T Consensus 96 gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~gi~v~~igvG~~~-~~~~~~~~ 173 (223)
T 2b2x_A 96 GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHD-NYRLKQVIQDCEDENIQRFSIAILGHY-NRGNLSTE 173 (223)
T ss_dssp CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTT-GGGHHHHHHHHHTTTEEEEEEEECGGG-C---CCCH
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC-CccHHHHHHHHHHCCCEEEEEEecCcc-ccccccch
Confidence 4 49999999999876 4411 1234667778888877654 347888999999999999999999864 21 11
Q ss_pred HHHHHHHHhcCC-CCcEEEEcCCC
Q 016164 154 KLEALLAAVNNN-DSSHLVHVPPG 176 (394)
Q Consensus 154 ~l~~~~~~vn~~-~~S~~v~vp~g 176 (394)
.+....+.+-+. .+.||..+...
T Consensus 174 ~~~~~L~~iA~~p~~g~~~~~~~~ 197 (223)
T 2b2x_A 174 KFVEEIKSIASEPTEKHFFNVSDE 197 (223)
T ss_dssp HHHHHHHTTSCSSGGGTEEEESST
T ss_pred hHHHHHHHHhCCCchhcEEEeCCH
Confidence 122333333333 34566666654
No 17
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.59 E-value=8.8e-14 Score=124.79 Aligned_cols=165 Identities=11% Similarity=0.102 Sum_probs=122.1
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcccc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEIG 82 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~D~~kilsaL~~l~~~ 82 (394)
.++|+||.|.||.+ |+.+++++..|+..+.-.++..+||||+|++. +.++.++| .+...++.+|..+.+.
T Consensus 8 div~vlD~SgSm~~-------~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 79 (200)
T 1v7p_C 8 DVVVVCDESNSIYP-------WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANN-PRVVFNLNTYKTKEEMIVATSQTSQY 79 (200)
T ss_dssp EEEEEEECCTTCCC-------HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSS-EEEEECTTTCSSHHHHHHHHHHCCCC
T ss_pred cEEEEEECCCCccc-------HHHHHHHHHHHHHhcCCCCCceEEEEEEECCC-ceEEEeCCCcCCHHHHHHHHHhhhcc
Confidence 58999999999973 88999999999997655567899999999987 68999998 4778899999988764
Q ss_pred -C-cccHHHHHHHHHHH-hhhc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC-----CCCCc-
Q 016164 83 -G-ELNLAAGIQVAQLA-LKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE-----DDEGN- 151 (394)
Q Consensus 83 -G-~~sL~~gL~iA~lA-Lkhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~-----e~~~n- 151 (394)
| .+++..||+.|... |... ..+..++.||||+++..+ +...+...++.+|+.+|.|++||+|. .. ..
T Consensus 80 ~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~-~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~-~~~ 157 (200)
T 1v7p_C 80 GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESH-DGSMLKAVIDQCNHDNILRFGIAVLGYLNRNAL-DTK 157 (200)
T ss_dssp CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCS-CGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTC-CCH
T ss_pred CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCC-CcccHHHHHHHHHHCCCEEEEEEeccccccccc-chh
Confidence 4 59999999999876 4321 123456778888888765 45567789999999999999999953 22 21
Q ss_pred --HHHHHHHHHHhcCCCCcEEEEcCCCCchhhhh
Q 016164 152 --TEKLEALLAAVNNNDSSHLVHVPPGPNALSDV 183 (394)
Q Consensus 152 --~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~ 183 (394)
.+.|+.++. ..++.|+..+..... |.++
T Consensus 158 ~~~~~L~~iA~---~~~g~~~~~~~~~~~-l~~i 187 (200)
T 1v7p_C 158 NLIKEIKAIAS---IPTERYFFNVSDEAA-LLEK 187 (200)
T ss_dssp HHHHHHHHHSC---SSHHHHEEEESSSGG-GHHH
T ss_pred hHHHHHHHHhC---CccHhcEEEcCCHHH-HHHH
Confidence 233555542 223456666654332 4443
No 18
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.58 E-value=7.4e-15 Score=130.36 Aligned_cols=161 Identities=12% Similarity=0.127 Sum_probs=122.6
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCcc-c
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGLE-I 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~--D~~kilsaL~~l~-~ 81 (394)
.++|+||.|.||... .|...++++..|+..+. ++..+||||+|++. +.+..+++. +...++..|..+. +
T Consensus 11 div~vlD~SgSM~~~-----~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~ 82 (198)
T 1n3y_A 11 DIVFLIDGSGSISSR-----NFATMMNFVRAVISQFQ--RPSTQFSLMQFSNK-FQTHFTFEEFRRSSNPLSLLASVHQL 82 (198)
T ss_dssp EEEEEEECCTTSCHH-----HHHHHHHHHHHHHTTSC--TTTEEEEEEEESSS-EEEEECHHHHHHCSSGGGGGTTCCCC
T ss_pred eEEEEEECCCCCCHH-----HHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCC-ccEEEecCccCCHHHHHHHHhcCcCC
Confidence 589999999999764 45677788888888765 89999999999988 688888864 2245777787775 6
Q ss_pred cCcccHHHHHHHHHHHh-hhcC--CCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHHHH
Q 016164 82 GGELNLAAGIQVAQLAL-KHRQ--NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE--GNTEKLE 156 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lAL-khr~--~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~--~n~~~l~ 156 (394)
+|.+++..||+.|...| +... .+..++.||||+++..+.++.++..+++.+++.+|+|++||+|.... .+...|+
T Consensus 83 ~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~ 162 (198)
T 1n3y_A 83 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELN 162 (198)
T ss_dssp CSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHH
T ss_pred CCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHH
Confidence 89999999999998444 4311 13456778888888877667777889999999999999999998751 1467888
Q ss_pred HHHHHhcCCCCcEEEEcCCC
Q 016164 157 ALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 157 ~~~~~vn~~~~S~~v~vp~g 176 (394)
.++.. +++.|+..+...
T Consensus 163 ~iA~~---~~g~~~~~~~~~ 179 (198)
T 1n3y_A 163 DIASK---PSQEHIFKVEDF 179 (198)
T ss_dssp HHSCS---SSGGGEEEESSG
T ss_pred HHHcC---CCcccEEEeCCH
Confidence 88643 345675666553
No 19
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.58 E-value=3.1e-14 Score=134.97 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=125.4
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC----HHHHHHHhcCcc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD----LGKILACMHGLE 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D----~~kilsaL~~l~ 80 (394)
.++|+||.|.||... +++...++++..|+..+...+...+||||+|++. +.++.+++.+ ...++.+|..+.
T Consensus 23 div~vlD~SgSM~~~----~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~l~~~i~~l~ 97 (281)
T 4hqf_A 23 DLYLLMDGSGSIRRH----NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNN-AREIIRLHSDASKNKEKALIIIKSLL 97 (281)
T ss_dssp EEEEEEECCCCSSTH----HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETT-EEEEEEECSSCSSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCcCHH----HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCC-ceEEEEccccCccCHHHHHHHHHHHh
Confidence 589999999999753 2348899999999998766666899999999987 6888887764 778888888775
Q ss_pred ----ccCcccHHHHHHHHHHHhhhcCC-CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016164 81 ----IGGELNLAAGIQVAQLALKHRQN-KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 155 (394)
Q Consensus 81 ----~~G~~sL~~gL~iA~lALkhr~~-k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l 155 (394)
++|.+++..||+.|...|..+.. ++.++.||||+++..+ ++.++...++.|++.||.|++||||... +.+.|
T Consensus 98 ~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~-d~~~~~~~~~~l~~~gv~i~~igiG~~~--~~~~L 174 (281)
T 4hqf_A 98 STNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPD-SIQDSLKESRKLSDRGVKIAVFGIGQGI--NVAFN 174 (281)
T ss_dssp HTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCS-CHHHHHHHHHHHHHTTCEEEEEEESSSC--CHHHH
T ss_pred hccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCC-CcHHHHHHHHHHHHCCCEEEEEeCCCcc--CHHHH
Confidence 68999999999999888765422 3356667777777654 5678999999999999999999999875 56778
Q ss_pred HHHHHHhcCCCCcEEEEcCCC
Q 016164 156 EALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 156 ~~~~~~vn~~~~S~~v~vp~g 176 (394)
+.+...-..++++|++.+..-
T Consensus 175 ~~iA~~~~~~g~~~~~~~~~~ 195 (281)
T 4hqf_A 175 RFLVGCHPSDGKCNLYADSAW 195 (281)
T ss_dssp HHHTTSCSSSSCCTTEEEECG
T ss_pred HhhhCCCCCCCCCceEEecch
Confidence 887632111111455555543
No 20
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.55 E-value=4.2e-16 Score=137.99 Aligned_cols=149 Identities=18% Similarity=0.302 Sum_probs=120.4
Q ss_pred ceEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccC
Q 016164 4 EATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGG 83 (394)
Q Consensus 4 Ea~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G 83 (394)
-.++||||.|.||. ++||..++.++..|+... .+|..+||||+|.+..+++++++|.+...+...|..+.++|
T Consensus 6 ~~vv~vlD~SgSM~-----~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g 78 (189)
T 2x31_A 6 RVLIFAVDASGSAA-----VARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGG 78 (189)
T ss_dssp CEEEEEEECCTTSC-----C--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCB
T ss_pred eEEEEEEECCCCCC-----chHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCC
Confidence 46899999999995 589999999999999864 37889999999998557899999999999999999999999
Q ss_pred cccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCCh----------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 016164 84 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK----------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 153 (394)
Q Consensus 84 ~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~----------~~l~~~akkLKknnI~VdiI~fG~e~~~n~~ 153 (394)
.+++..||..|...|+....+..++.||||+++..+... .++..+++.+++.+|.|.+||||... ..
T Consensus 79 ~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~~---~~ 155 (189)
T 2x31_A 79 GTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMRP---NP 155 (189)
T ss_dssp CCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHSS---CS
T ss_pred CCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCCC---HH
Confidence 999999999999999875444567788888877665421 23445678889999999999999763 24
Q ss_pred HHHHHHHHh
Q 016164 154 KLEALLAAV 162 (394)
Q Consensus 154 ~l~~~~~~v 162 (394)
.|+.+++.+
T Consensus 156 ~L~~iA~~~ 164 (189)
T 2x31_A 156 ALVDLARTM 164 (189)
T ss_dssp SSCSTTTEE
T ss_pred HHHHHHHhc
Confidence 666666444
No 21
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.55 E-value=1e-13 Score=125.52 Aligned_cols=170 Identities=13% Similarity=0.158 Sum_probs=121.7
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCC--CCHHHHHHHhcCcccc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPT--SDLGKILACMHGLEIG 82 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT--~D~~kilsaL~~l~~~ 82 (394)
.++|+||.|.||.+ |+.++.++..|+..+.-.++..+||||+|++. +.++.+++ .+...++.+|..+.+.
T Consensus 9 div~vlD~SgSm~~-------~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 80 (213)
T 1pt6_A 9 DIVIVLDGSNSIYP-------WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGEN-VTHEFNLNKYSSTEEVLVAAKKIVQR 80 (213)
T ss_dssp EEEEEEECCTTCCC-------HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSS-EEEEECTTTCSSHHHHHHHHHTCCCC
T ss_pred cEEEEEECCCChhh-------HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCC-ccEEEeccccCCHHHHHHHHHhccCC
Confidence 58999999999983 78899999999987644578999999999987 68888886 3677888999988754
Q ss_pred -C-cccHHHHHHHHHHH-hhhc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC---CcHHH
Q 016164 83 -G-ELNLAAGIQVAQLA-LKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE---GNTEK 154 (394)
Q Consensus 83 -G-~~sL~~gL~iA~lA-Lkhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~---~n~~~ 154 (394)
| .+++..||+.|... |+.. ..+..++.||||+++..+.+ .++...++++|+.+|.|++||||.... .+...
T Consensus 81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~-~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~ 159 (213)
T 1pt6_A 81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN-HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEK 159 (213)
T ss_dssp CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS-HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHH
T ss_pred CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC-ccHHHHHHHHHHCCCEEEEEEeccccccccccchh
Confidence 5 48999999999876 4411 12346677888888876553 478889999999999999999997530 01112
Q ss_pred HHHHHHHhcCC-CCcEEEEcCCCCchhhhhh
Q 016164 155 LEALLAAVNNN-DSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 155 l~~~~~~vn~~-~~S~~v~vp~g~~lLsD~l 184 (394)
+....+.+-+. .+.||..+.... -|.+++
T Consensus 160 ~~~~L~~iA~~~~~g~~~~~~~~~-~l~~i~ 189 (213)
T 1pt6_A 160 FVEEIKSIASEPTEKHFFNVSDEL-ALVTIV 189 (213)
T ss_dssp HHHHHHHHSCSSHHHHEEEESSGG-GGGGGH
T ss_pred hHHHHHHHhCCCchhcEEEeCCHH-HHHHHH
Confidence 22333333332 346777776543 244443
No 22
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.53 E-value=5.9e-14 Score=141.64 Aligned_cols=169 Identities=14% Similarity=0.201 Sum_probs=126.8
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE----CCCCCHHHHHHHhcCcc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV----TPTSDLGKILACMHGLE 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLv----tlT~D~~kilsaL~~l~ 80 (394)
.++|+||.|.||.. +||+.+++++..|+..+...++..+||||+|++. +++++ ++|.|...++.+|..+.
T Consensus 3 div~vlD~SgSM~~-----~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~ 76 (497)
T 1rrk_A 3 NIYLVLDGSDSIGA-----SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEIN 76 (497)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHHCC
T ss_pred eEEEEEECCCCcch-----hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCC-ceEeeccccccccCHHHHHHHHHhCc
Confidence 48999999999965 8999999999999999877888899999999987 68888 77789999999999987
Q ss_pred -----ccCcccHHHHHHHHHHHhhhcCC------CCCCeEEEEEecCCCCC--ChhHHHHHHHHH----------HhCCc
Q 016164 81 -----IGGELNLAAGIQVAQLALKHRQN------KKQQQRIIVFVGSPIKH--EKKVLEMIGRKL----------KKNSV 137 (394)
Q Consensus 81 -----~~G~~sL~~gL~iA~lALkhr~~------k~~~~RIVlFvgSp~~~--d~~~l~~~akkL----------KknnI 137 (394)
.+|.+++..||+.|...|..+.. +..++.||||+++..+. ++....+.++.+ ++.+|
T Consensus 77 ~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 156 (497)
T 1rrk_A 77 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 156 (497)
T ss_dssp GGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGE
T ss_pred CccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCe
Confidence 45799999999999988854322 23556777888886654 344433333333 34499
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 138 ALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 138 ~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
+|++||+|... +...|+.|+.... +..|+..+.... -|.+++
T Consensus 157 ~v~~igvG~~~--~~~~L~~iA~~~~--g~~~~~~~~~~~-~l~~~~ 198 (497)
T 1rrk_A 157 DVYVFGVGPLV--NQVNINALASKKD--NEQHVCKVKDME-CLEDVF 198 (497)
T ss_dssp EEEEEECSSSC--CHHHHHHHSCCCT--TCCCEEETTCHH-HHHHHH
T ss_pred eEEEecCCCcc--CHHHHHHHhcCCC--CcceEEEeCCHH-HHhhhh
Confidence 99999999865 5678888874331 223788876532 244433
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.48 E-value=1.9e-13 Score=138.72 Aligned_cols=163 Identities=15% Similarity=0.224 Sum_probs=125.9
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHHHHHHhcCcc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGKILACMHGLE 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~----D~~kilsaL~~l~ 80 (394)
.+||+||.|.||.. ++|+.+++++..|++.+...++..+||||+|++. +.++.+++. |...++.+|..+.
T Consensus 11 divfvlD~SgSM~~-----~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~~~l~~l~ 84 (509)
T 2odp_A 11 NLYLLLDASQSVSE-----NDFLIFKESASLMVDRIFSFEINVSVAIITFASE-PKVLMSVLNDNSRDMTEVISSLENAN 84 (509)
T ss_dssp EEEEEEECSTTSCH-----HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHHTCC
T ss_pred eEEEEEeCCCccch-----hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCC-CceeEeccCCCCCCHHHHHHHHHhcc
Confidence 48999999999974 4679999999999998877789999999999987 799999886 8999999999997
Q ss_pred cc-----CcccHHHHHHHHHHHhhhcCC---------CCCCeEEEEEecCCCCC--ChhHHHHHHHHH------HhCCce
Q 016164 81 IG-----GELNLAAGIQVAQLALKHRQN---------KKQQQRIIVFVGSPIKH--EKKVLEMIGRKL------KKNSVA 138 (394)
Q Consensus 81 ~~-----G~~sL~~gL~iA~lALkhr~~---------k~~~~RIVlFvgSp~~~--d~~~l~~~akkL------KknnI~ 138 (394)
.. |++++..||+.|...|+.... +..++.||||+++..+. ++..+.+.++.+ ++.+|.
T Consensus 85 ~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 164 (509)
T 2odp_A 85 YKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLD 164 (509)
T ss_dssp GGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEE
T ss_pred cccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceE
Confidence 65 889999999999988854211 12446678887776654 344444444433 288999
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 139 LDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 139 VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
|++||||... .|.+.|+.++... ++..|+..+...
T Consensus 165 i~~iGvG~~~-~~~~~L~~iA~~~--~G~~~~~~~~~~ 199 (509)
T 2odp_A 165 IYAIGVGKLD-VDWRELNELGSKK--DGERHAFILQDT 199 (509)
T ss_dssp EEEEEESSSC-CCHHHHHHHSCCC--TTCCCEEEESSH
T ss_pred EEEEEcCCCc-ccHHHHHhhccCC--CCceeeEEecCH
Confidence 9999999974 4678899987533 234577777664
No 24
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.41 E-value=1.3e-12 Score=138.04 Aligned_cols=162 Identities=11% Similarity=0.139 Sum_probs=125.7
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC----CHHHHHHHhcCcc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS----DLGKILACMHGLE 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~----D~~kilsaL~~l~ 80 (394)
.++|+||.|.||.. ++|+..++++..|+..+.......+||||+|++. +.+++++|. |...++.+|+.+.
T Consensus 245 div~vlD~SgSM~~-----~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~-~~~~~~l~~~~~~~~~~~~~~i~~l~ 318 (741)
T 3hrz_D 245 NIYLVLDGSGSIGA-----SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATY-PKIWVKVSEADSSNADWVTKQLNEIN 318 (741)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSS-EEEEECTTSGGGGCHHHHHHHHTTCC
T ss_pred eEEEEeccCCcccc-----cchHHHHHHHHHHHHhhhccCCCceEEEEEeccC-CceeEeecccCCcCHHHHHHHHHhcc
Confidence 48999999999964 4588999999999999877677789999999987 699999998 8999999999997
Q ss_pred -----ccCcccHHHHHHHHHHHhhhc-----C-CCCCCeEEEEEecCCCCC--ChhHHHHHH----------HHHHhCCc
Q 016164 81 -----IGGELNLAAGIQVAQLALKHR-----Q-NKKQQQRIIVFVGSPIKH--EKKVLEMIG----------RKLKKNSV 137 (394)
Q Consensus 81 -----~~G~~sL~~gL~iA~lALkhr-----~-~k~~~~RIVlFvgSp~~~--d~~~l~~~a----------kkLKknnI 137 (394)
.+|.+++..||+.|...|... . .+..++.||||+++..+. ++......+ +.+++.+|
T Consensus 319 ~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi 398 (741)
T 3hrz_D 319 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 398 (741)
T ss_dssp GGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGE
T ss_pred cccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCe
Confidence 789999999999999888311 0 122456678888886553 454444433 36788999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 138 ALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 138 ~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
+|++||||... |.+.|+.|..... +..|+..+..-
T Consensus 399 ~i~~igvG~~~--~~~~L~~ia~~~~--g~~~~~~~~~~ 433 (741)
T 3hrz_D 399 DVYVFGVGPLV--NQVNINALASKKD--NEQHVFKVKDM 433 (741)
T ss_dssp EEEEEECSSSC--CHHHHHHHSCCCT--TCCCEECBSSH
T ss_pred eEEEEeCCCcC--CHHHHHHHhcCCC--CcceEEEeCCH
Confidence 99999999854 5678888874332 22377777664
No 25
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.38 E-value=5.9e-12 Score=113.37 Aligned_cols=140 Identities=15% Similarity=0.173 Sum_probs=110.6
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCcccc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGLEIG 82 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~--D~~kilsaL~~l~~~ 82 (394)
.++|+||.|.||. +.+|+..++++..|+..+.-..+..+||||+|++. +.+..+++. +...++.+|..+...
T Consensus 23 DivfvlD~S~Sm~-----~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~i~~l~~~ 96 (199)
T 3zqk_A 23 DVAFVLEGSDKIG-----EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYM-VTVEYPFSEAQSKGDILQRLREIRYQ 96 (199)
T ss_dssp EEEEEEECCTTTC-----HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSS-EEEEECTTSCCCHHHHHHHHHHCCCC
T ss_pred CEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCc-ccEEEecCCcCCHHHHHHHHHhCcCC
Confidence 5899999999995 57899999999999998766678999999999987 689999886 888999999998754
Q ss_pred -C-cccHHHHHHHHHHHh-hhc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 016164 83 -G-ELNLAAGIQVAQLAL-KHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 157 (394)
Q Consensus 83 -G-~~sL~~gL~iA~lAL-khr--~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~ 157 (394)
| .+++..||+.|...| +.. ..+..++.||+|+++....+... + +.+|+|++||+|.. .|.+.|+.
T Consensus 97 gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~~-------~-~~~v~v~~iGiG~~--~~~~~L~~ 166 (199)
T 3zqk_A 97 GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIKR-------L-PGDIQVVPIGVGPN--ANVQELER 166 (199)
T ss_dssp CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCCC-------C-CTTEEEEEEEESTT--CCHHHHHH
T ss_pred CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHHH-------H-hCCCEEEEEEcCCC--CCHHHHHH
Confidence 4 499999999997643 211 11345677888888876543322 1 27999999999975 36788998
Q ss_pred HHH
Q 016164 158 LLA 160 (394)
Q Consensus 158 ~~~ 160 (394)
+..
T Consensus 167 iA~ 169 (199)
T 3zqk_A 167 IGW 169 (199)
T ss_dssp HHT
T ss_pred HhC
Confidence 873
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.24 E-value=2.9e-11 Score=107.10 Aligned_cols=152 Identities=10% Similarity=0.096 Sum_probs=105.4
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCH--HHHHHHhcCcc-c
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDL--GKILACMHGLE-I 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~--~kilsaL~~l~-~ 81 (394)
.++|+||.|.||. +.+|+.+++++..|+..+ .++..+||||+|++. +.+..+++... ..+...+..+. .
T Consensus 4 divfvlD~S~Sm~-----~~~~~~~k~~~~~~~~~l--~~~~~rv~vv~fs~~-~~~~~~l~~~~~~~~~~~~~~~i~~~ 75 (179)
T 1mjn_A 4 DLVFLFDGSMSLQ-----PDEFQKILDFMKDVMKKC--SNTSYQFAAVQFSTS-YKTEFDFSDYVKRKDPDALLKHVKHM 75 (179)
T ss_dssp EEEEEEECBTTCC-----HHHHHHHHHHHHHHHHHT--TTSSEEEEEEEESSS-EEEEECHHHHHHHCCHHHHHTTCCCC
T ss_pred cEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHHh--CCCCeEEEEEEECCc-eeEEEcCcccCCHHHHHHHHHhcccC
Confidence 5899999999996 468999999999999986 334469999999987 68888888532 23445555553 3
Q ss_pred cCcccHHHHHHHHHH-Hhhhc--CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCc---HHHH
Q 016164 82 GGELNLAAGIQVAQL-ALKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGN---TEKL 155 (394)
Q Consensus 82 ~G~~sL~~gL~iA~l-ALkhr--~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n---~~~l 155 (394)
+|.|++..||+.|.. .++.. ..+..++.||||+++..+.+... +++.+|.|++||+|... .. .+.|
T Consensus 76 ~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~-------~~~~~i~i~~igvG~~~-~~~~~~~~L 147 (179)
T 1mjn_A 76 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNI-------DAAKDIIRYIIGIGKHF-QTKESQETL 147 (179)
T ss_dssp CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCC-------GGGTTSEEEEEEESGGG-CSHHHHHTT
T ss_pred CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcch-------HHHCCCEEEEEEccccc-cccccHHHH
Confidence 689999999999985 44421 12345677888888876654321 26789999999999875 22 2344
Q ss_pred HHHHHHhcCCCCcEEEEcCC
Q 016164 156 EALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 156 ~~~~~~vn~~~~S~~v~vp~ 175 (394)
+.++ ...++.|+..+..
T Consensus 148 ~~iA---~~~~~~~~~~~~~ 164 (179)
T 1mjn_A 148 HKFA---SKPASEFVKILDT 164 (179)
T ss_dssp GGGS---CSCHHHHEEEESS
T ss_pred HHHh---CCccHhcEEEeCC
Confidence 4443 1122346666554
No 27
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.22 E-value=1.8e-11 Score=137.37 Aligned_cols=161 Identities=13% Similarity=0.139 Sum_probs=126.4
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCC--CHHHHHHHhcCc-cc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTS--DLGKILACMHGL-EI 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~--D~~kilsaL~~l-~~ 81 (394)
.++|+||.|.||. +.+|+..++++..|++.+. .+..+||||+|++. +.+..++|. +...++.++..+ ..
T Consensus 132 DIvfvlD~SgSm~-----~~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs~~-~~~~~~lt~~~~~~~l~~ai~~i~~~ 203 (1095)
T 3k6s_A 132 DIVFLIDGSGSIS-----SRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNK-FQTHFTFEEFRRSSNPLSLLASVHQL 203 (1095)
T ss_dssp EEEEEEECCTTSC-----SHHHHHHHHHHHHHHHSSC--SSSEEEEEEEESSS-EEEEECSHHHHSCSCGGGGTTTCCCC
T ss_pred cEEEEEcCCCCCC-----hhHHHHHHHHHHHHHHhcc--ccccEEEEEEECCe-EEEEecCcccCCHHHHHHHHhhhhcc
Confidence 4799999999995 6899999999999999764 44589999999987 799999985 666778888887 56
Q ss_pred cCcccHHHHHHHHHHHhhhc---CCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC--CcHHHHH
Q 016164 82 GGELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE--GNTEKLE 156 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALkhr---~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~--~n~~~l~ 156 (394)
+|.+++..||+.|...|.+. ..+..++.||||+++..+.|+.++...++.+|+.+|.|++||+|.... .+.+.|+
T Consensus 204 gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~ 283 (1095)
T 3k6s_A 204 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELN 283 (1095)
T ss_dssp CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHH
T ss_pred cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHHCCCEEEEEecccccccccCHHHHH
Confidence 88999999999997655321 123456778888888887778889999999999999999999998620 2456777
Q ss_pred HHHHHhcCCCCcEEEEcCCC
Q 016164 157 ALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 157 ~~~~~vn~~~~S~~v~vp~g 176 (394)
.++.. .++.|+..+..-
T Consensus 284 ~IAs~---p~g~~vf~v~d~ 300 (1095)
T 3k6s_A 284 DIASK---PSQEHIFKVEDF 300 (1095)
T ss_dssp TTSCS---STTTSCCCBSCS
T ss_pred HHHcC---CCCceEEEcCCH
Confidence 77632 234477766543
No 28
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.84 E-value=6.7e-09 Score=107.92 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=88.9
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHH--HHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCH--HHHHHHhcCcc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEA--ANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDL--GKILACMHGLE 80 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~A--v~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~--~kilsaL~~l~ 80 (394)
.++||||.|.||..+|.. +|+.+ +++ +-.|+. ..+..+||||+|++. .+.+++|.+. ..++..|..+
T Consensus 370 ~v~lvvD~SgSM~~~~~~-~~l~~-~~~Aa~l~~~~----~~~~d~vglv~Fs~~--~~~~~~t~~~~l~~~l~~l~~~- 440 (538)
T 1yvr_A 370 RFLLAIDVSASMNQRVLG-SILNA-SVVAAAMCMLV----ARTEKDSHMVAFSDE--MLPCPITVNMLLHEVVEKMSDI- 440 (538)
T ss_dssp CEEEEEECSGGGGSBSTT-SSCBH-HHHHHHHHHHH----HHHCSSEEEEEESSS--EECCSCCTTSCHHHHHHHHTTC-
T ss_pred eEEEEEECccccCCCCCC-CcHHH-HHHHHHHHHHH----hccCCceEEEEECCC--ceEcCCCCcccHHHHHHHHhcC-
Confidence 589999999999998876 56776 443 333333 346679999999973 4556677653 4444555544
Q ss_pred ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhC-C--ceEEEEEeCCCC
Q 016164 81 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN-S--VALDIVNFGEDD 148 (394)
Q Consensus 81 ~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKkn-n--I~VdiI~fG~e~ 148 (394)
++|+|++..+|..|... +....+||||+++..+.+..++...++++++. | |++.+||||...
T Consensus 441 ~~GgT~i~~aL~~a~~~------~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~~ 505 (538)
T 1yvr_A 441 TMGSTDCALPMLWAQKT------NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNG 505 (538)
T ss_dssp CCSCCCTTHHHHHHHHT------TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSS
T ss_pred CCCCCcHHHHHHHHHhc------cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCCC
Confidence 68999999999988543 23457889898887665444455666666543 5 555999999854
No 29
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=98.73 E-value=3.3e-08 Score=109.07 Aligned_cols=114 Identities=20% Similarity=0.154 Sum_probs=84.9
Q ss_pred eEEEEEeCChhhhCCCCC-CcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCcc-----EE-----------------
Q 016164 5 ATLICIDNSEWMRNGDYA-PSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGV-----RV----------------- 61 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~-PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a-----~v----------------- 61 (394)
.+|||||.|.||...++. ++||+..+++++.|++.+ ..+|..+||||+|++... .|
T Consensus 226 DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L-~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~~ 304 (893)
T 2ww8_A 226 DVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKI-TSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSLF 304 (893)
T ss_dssp EEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHH-HTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCTT
T ss_pred cEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHh-hcCCCcEEEEEEecCccccccccccccccccccccccccccc
Confidence 489999999999986543 359999999999999654 458999999999998531 11
Q ss_pred ----------------EECCCCCHHHH---HHHhcC----------ccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 016164 62 ----------------LVTPTSDLGKI---LACMHG----------LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIV 112 (394)
Q Consensus 62 ----------------LvtlT~D~~ki---lsaL~~----------l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVl 112 (394)
.+++|.|+..+ ...|.. +.+.|++++..||..|...|+....+..++.|||
T Consensus 305 w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIIL 384 (893)
T 2ww8_A 305 WNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKVIFH 384 (893)
T ss_dssp SCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEE
T ss_pred cccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeEEEE
Confidence 13567888544 477764 3458899999999999999975322346667777
Q ss_pred EecCCCC
Q 016164 113 FVGSPIK 119 (394)
Q Consensus 113 FvgSp~~ 119 (394)
+.++.-+
T Consensus 385 LTDG~pt 391 (893)
T 2ww8_A 385 ITDGVPT 391 (893)
T ss_dssp EESSCCS
T ss_pred EcCCCCC
Confidence 7766544
No 30
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.52 E-value=2.1e-07 Score=88.80 Aligned_cols=88 Identities=24% Similarity=0.268 Sum_probs=76.4
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--cEEEE-CCCCCHHHHHHHhcCccc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG--VRVLV-TPTSDLGKILACMHGLEI 81 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~--a~vLv-tlT~D~~kilsaL~~l~~ 81 (394)
.|+|+||.|.||. .||.+.+.++..++..+......++|+||+|.++. +.+++ ++|.+. .+...+..+..
T Consensus 136 ~vvfLVDtSgSM~------~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~-~~~~~l~~L~a 208 (242)
T 3rag_A 136 HLVVCLDTSASMR------DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV-NVAALEAELVA 208 (242)
T ss_dssp EEEEEEECSGGGT------TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-CHHHHHHHCCC
T ss_pred CEEEEEECcccHH------HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-HHHHHHhhCCC
Confidence 5899999999996 27999999999999987666679999999999974 45554 999988 77788888899
Q ss_pred cCcccHHHHHHHHHHHhh
Q 016164 82 GGELNLAAGIQVAQLALK 99 (394)
Q Consensus 82 ~G~~sL~~gL~iA~lALk 99 (394)
+|.|.+..||..|...|+
T Consensus 209 gG~Tplg~AL~~A~~~~~ 226 (242)
T 3rag_A 209 RGGTPTGPAIDHAADLLL 226 (242)
T ss_dssp CSCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 999999999999988773
No 31
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.52 E-value=7.9e-07 Score=92.67 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=85.4
Q ss_pred eEEEEEeCChhhhCCCC----CCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCC--HHHHHHHhcC
Q 016164 5 ATLICIDNSEWMRNGDY----APSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSD--LGKILACMHG 78 (394)
Q Consensus 5 a~vIvIDnSesMrngD~----~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D--~~kilsaL~~ 78 (394)
.++||||+|.||..+.. ++++++++...+ |+... ...+||||+|++. ...+++|.+ ...++..|..
T Consensus 364 ~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la--~~~~r----~~d~v~lv~Fs~~--~~~~~~~~~~~l~~~l~~l~~ 435 (535)
T 2nvo_A 364 RHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS--LIALR----TEPDALTMGFAEQ--FRPLGITPRDTLESAMQKAQS 435 (535)
T ss_dssp EEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH--HHHHH----HSSEEEEEEEBSS--EEECCCCTTCCHHHHHHHTCC
T ss_pred eEEEEEECCccccCCCCCCCCcccHHHHHHHHH--HHHcC----cCCceEEEEECCc--ceEcCCCcchhHHHHHHHHhh
Confidence 47899999999987332 367777664333 33321 2338999999984 233455544 3334444443
Q ss_pred ccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhC---CceEEEEEeCCCC
Q 016164 79 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN---SVALDIVNFGEDD 148 (394)
Q Consensus 79 l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKkn---nI~VdiI~fG~e~ 148 (394)
. ++|+|++..+|..|. ++ +....+||||+++.......++.++++++|+. +++|.+||+|...
T Consensus 436 ~-~~ggTdi~~~l~~a~---~~---~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~~~~ 501 (535)
T 2nvo_A 436 V-SFGGTDCAQPILWAA---QE---RLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTATE 501 (535)
T ss_dssp S-SBCCCCTTHHHHHHH---HT---TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCSC
T ss_pred C-CCCCccHHHHHHHHH---Hh---cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEeccCCC
Confidence 3 378999999987662 22 33568899999887765444566677777765 8999999998754
No 32
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.50 E-value=6.9e-07 Score=97.10 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=106.6
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEEC--------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVT-------------------- 64 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvt-------------------- 64 (394)
..++|||+|.+.. ++++.++++..++.. .+|..+||||||.+. +.+.--
T Consensus 134 ~~vFvIDvS~~a~-------~l~~l~~si~~~L~~---Lp~~~~VGlITf~~~-v~~y~l~~~~~~~~~vf~G~k~~~~~ 202 (769)
T 2nut_A 134 IFLYVVDTCMEDE-------DLQALKESMQMSLSL---LPPTALVGLITFGRM-VQVHELGCEGISKSYVFRGTKDLSAK 202 (769)
T ss_dssp EEEEEEECCSCHH-------HHHHHHHHHHHHHTT---SCTTCEEEEEEESSE-EEEEESSCCSSCEEEEEETTSCCCSH
T ss_pred EEEEEEECCccHH-------HHHHHHHHHHHHHHh---CCCCceEEEEEeCCE-EEEEeCCCCCCccceeecCCccccHH
Confidence 5789999998754 689999999888874 678899999999864 454210
Q ss_pred -------CC-----------CC----------------HHHHHHHhcCccc---------cCcccHHHHHHHHHHHhhhc
Q 016164 65 -------PT-----------SD----------------LGKILACMHGLEI---------GGELNLAAGIQVAQLALKHR 101 (394)
Q Consensus 65 -------lT-----------~D----------------~~kilsaL~~l~~---------~G~~sL~~gL~iA~lALkhr 101 (394)
++ .| ...|.+.|+.+.. .....++.||++|..+|+..
T Consensus 203 q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~ 282 (769)
T 2nut_A 203 QLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECT 282 (769)
T ss_dssp HHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhc
Confidence 00 01 1123344454433 45789999999999999964
Q ss_pred CCCCCCeEEEEEecCCCCCChhH------------------------------HHHHHHHHHhCCceEEEEEeCCCCCCc
Q 016164 102 QNKKQQQRIIVFVGSPIKHEKKV------------------------------LEMIGRKLKKNSVALDIVNFGEDDEGN 151 (394)
Q Consensus 102 ~~k~~~~RIVlFvgSp~~~d~~~------------------------------l~~~akkLKknnI~VdiI~fG~e~~~n 151 (394)
.++...||++|++++-+..++. -.++|+++.+++|.||+..|+... -.
T Consensus 283 -~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~-vd 360 (769)
T 2nut_A 283 -FPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQ-TG 360 (769)
T ss_dssp -SCSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSC-CC
T ss_pred -ccCCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCc-cC
Confidence 2457899999999876532211 245899999999999999999876 57
Q ss_pred HHHHHHHHHHhc
Q 016164 152 TEKLEALLAAVN 163 (394)
Q Consensus 152 ~~~l~~~~~~vn 163 (394)
..-|+.+++.++
T Consensus 361 la~l~~l~~~TG 372 (769)
T 2nut_A 361 LLEMKCCPNLTG 372 (769)
T ss_dssp HHHHTHHHHHSS
T ss_pred hHHHHHHhhcCC
Confidence 788999998774
No 33
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.33 E-value=1.6e-05 Score=74.36 Aligned_cols=166 Identities=11% Similarity=0.150 Sum_probs=113.5
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHHHHHHhcCccccCc
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGE 84 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~kilsaL~~l~~~G~ 84 (394)
.+++|+|.|.||..- ++..+..++.++++.-..+...++|+++|.++......++|.|..++...+.++.+.|+
T Consensus 5 Dl~fl~D~S~SM~~d------i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~vsg~ 78 (212)
T 2iue_A 5 DLYFLMGLSGSAQGH------LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGK 78 (212)
T ss_dssp EEEEEEECCGGGTTT------HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCCCCCC
T ss_pred EEEEEEeCCCcchhH------HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHHHHHhhccccCC
Confidence 479999999999865 88888888888887756667799999999999877788999999999999999987764
Q ss_pred c----cHHHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCC-C-Ch----------------------------hHHHHHH
Q 016164 85 L----NLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIK-H-EK----------------------------KVLEMIG 129 (394)
Q Consensus 85 ~----sL~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~-~-d~----------------------------~~l~~~a 129 (394)
- .-..||..|........-++ ..|+|||+ +.+.- . |. -.+.++.
T Consensus 79 ~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~ 157 (212)
T 2iue_A 79 LATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLA 157 (212)
T ss_dssp SSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHH
T ss_pred CCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHH
Confidence 2 23335544442212111223 66776666 44432 1 11 3677899
Q ss_pred HHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 130 RKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 130 kkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
++|+++||.+...-= . .....++.|.+.+ .++....+......+-++|
T Consensus 158 ~~l~~~~i~~ifavt---~-~~~~~Y~~l~~~i---~~s~v~~L~~dSsni~~li 205 (212)
T 2iue_A 158 SKLAENNIQPIFVVP---S-RMVKTYEKLTTFI---PKLTIGELSDDSSNVAQLI 205 (212)
T ss_dssp HHHHHHTCEEEEEEE---H-HHHHHHHHHHHHS---TTCEEEEESSCCHHHHHHH
T ss_pred HHHHhcCCcEEEEEc---c-chhHHHHHHHHHc---ccceeeeecCCcHHHHHHH
Confidence 999999987543321 2 2234678888777 4666767766543344444
No 34
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.23 E-value=1.1e-05 Score=88.33 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=103.4
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE----------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL---------------------- 62 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vL---------------------- 62 (394)
..++|||+|.++.+.. .+++.++++...+...-..+|..+||||||... ..+.
T Consensus 189 ~yvFvIDvs~~av~~g----~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~-V~~~~l~~~~~g~k~~~~q~~mlvv~ 263 (810)
T 1pcx_A 189 TYCFLIDVSQSSIKSG----LLATTINTLLQNLDSIPNHDERTRISILCVDNA-IHYFKIPLDSENNEESADQINMMDIA 263 (810)
T ss_dssp EEEEEEECSHHHHHHT----HHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSS-EEEEECCCGGGC-------CEEECCC
T ss_pred EEEEEEECChHHHhhh----HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE-EEEEecCccccCccccccchhhcccc
Confidence 5799999998874311 467777777776654333345689999999754 3443
Q ss_pred --------------ECCCCCHHHHHHHhcCcc------ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCCh
Q 016164 63 --------------VTPTSDLGKILACMHGLE------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK 122 (394)
Q Consensus 63 --------------vtlT~D~~kilsaL~~l~------~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~ 122 (394)
+++......|...|+.+. -.+...++.||++|...|++ ...||++|++|+-+..+
T Consensus 264 dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~-----~GGrI~~F~sg~pt~Gp 338 (810)
T 1pcx_A 264 DLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGI 338 (810)
T ss_dssp CTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSST
T ss_pred ccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh-----cCCEEEEEecCCCCCCC
Confidence 111222333334444442 25689999999999999986 45799999998754222
Q ss_pred h--------------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 123 K--------------------------VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 123 ~--------------------------~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
+ --.++|+++.+++|.||+..++... -...-|..+++.++
T Consensus 339 G~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~-~dla~l~~l~~~TG 404 (810)
T 1pcx_A 339 GKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDY-MDVASLSNLSRFTA 404 (810)
T ss_dssp TCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSC-CCHHHHHHHHHTTT
T ss_pred CcccccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCc-cChHHHHHHHhcCC
Confidence 1 1257899999999999999999876 57788999987763
No 35
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=98.10 E-value=2.1e-05 Score=87.22 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=103.0
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEE----------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVL---------------------- 62 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vL---------------------- 62 (394)
..++|||+|....+.. .+++.++++...+...-..+|...||||||... ..+.
T Consensus 305 vyvFvIDvS~~av~~g----~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~-Vh~y~l~~~~~g~k~~~~q~qmlvvs 379 (926)
T 1m2v_B 305 TYCFLIDVSQSSIKSG----LLATTINTLLQNLDSIPNHDERTRISILCVDNA-IHYFKIPLDSENNEESADQINMMDIA 379 (926)
T ss_dssp BEEEEEECSHHHHHSC----HHHHHHHHHHHTTTTSCCTTSCCEECEEEESSS-EEEEECCCC---------CCEEEEEC
T ss_pred EEEEEEECCHHHHhhh----HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE-EEEEecCCcccCCcccccchhhcccc
Confidence 5799999998864322 466777777666654323334689999999753 3332
Q ss_pred --------------ECCCCCHHHHHHHhcCcc------ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCCh
Q 016164 63 --------------VTPTSDLGKILACMHGLE------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK 122 (394)
Q Consensus 63 --------------vtlT~D~~kilsaL~~l~------~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~ 122 (394)
+++......|...|+.|. -.....++.||++|..+|++ ...||++|++|+-+..+
T Consensus 380 dl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~-----~GGrI~~F~sg~Pt~Gp 454 (926)
T 1m2v_B 380 DLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGI 454 (926)
T ss_dssp CCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSST
T ss_pred ccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh-----hCCEEEEEecCCCCCCC
Confidence 122223344444455442 24578999999999999986 46799999998854211
Q ss_pred h-----------------H---------HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 123 K-----------------V---------LEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 123 ~-----------------~---------l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
+ . -.++|+++.+++|.||+..++..- -...-|..+++.+.
T Consensus 455 G~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~-vdla~l~~l~~~TG 520 (926)
T 1m2v_B 455 GKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDY-MDVASLSNLSRFTA 520 (926)
T ss_dssp TCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSC-CCHHHHHHHHHTTT
T ss_pred CcccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCC-cChHHHHHHHhcCC
Confidence 1 1 257899999999999999999876 67788999987763
No 36
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=98.07 E-value=8.4e-05 Score=80.77 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=105.1
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEE-C-------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLV-T------------------- 64 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLv-t------------------- 64 (394)
..++|||+|.... .+++.++++...++. .+|...||||||... ..+.- .
T Consensus 123 ~~vFvIDvs~~~~-------~l~~l~~sl~~~L~~---Lp~~~~VGlITf~~~-V~~y~l~~~~~~~~~V~~g~k~~~~~ 191 (768)
T 1m2o_A 123 IFFFVVDLTSETE-------NLDSLKESIITSLSL---LPPNALIGLITYGNV-VQLHDLSSETIDRCNVFRGDREYQLE 191 (768)
T ss_dssp EEEEEEECCSCHH-------HHHHHHHHHHHHHHT---SCTTCEEEEEEESSE-EEECCCSSSSSEEEEEEETTSCCCHH
T ss_pred EEEEEEECCcCHH-------HHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEECCCCCCcceeeecCCccccHH
Confidence 5689999998875 488888888888874 678889999999753 33321 0
Q ss_pred --------CCC----C---------------------------HHHHHHHhcCccc---------cCcccHHHHHHHHHH
Q 016164 65 --------PTS----D---------------------------LGKILACMHGLEI---------GGELNLAAGIQVAQL 96 (394)
Q Consensus 65 --------lT~----D---------------------------~~kilsaL~~l~~---------~G~~sL~~gL~iA~l 96 (394)
++. + ...|.+.|+.+.. .....++.||++|..
T Consensus 192 q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ 271 (768)
T 1m2o_A 192 ALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASL 271 (768)
T ss_dssp HHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHH
Confidence 000 1 0113344455532 345789999999999
Q ss_pred HhhhcCCCCCCeEEEEEecCCCCCChh---------------H---------------HHHHHHHHHhCCceEEEEEeCC
Q 016164 97 ALKHRQNKKQQQRIIVFVGSPIKHEKK---------------V---------------LEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 97 ALkhr~~k~~~~RIVlFvgSp~~~d~~---------------~---------------l~~~akkLKknnI~VdiI~fG~ 146 (394)
.|+.. .++...||++|++++-+..++ + -.++|+++.+++|.||+..++.
T Consensus 272 ll~~~-~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~ 350 (768)
T 1m2o_A 272 LLQGC-YKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCY 350 (768)
T ss_dssp HHHHH-CTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred HHhhc-cCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccC
Confidence 99864 345789999999987652111 1 1467899999999999999998
Q ss_pred CCCCcHHHHHHHHHHhc
Q 016164 147 DDEGNTEKLEALLAAVN 163 (394)
Q Consensus 147 e~~~n~~~l~~~~~~vn 163 (394)
.- -...-|..+++.+.
T Consensus 351 ~~-~dla~l~~l~~~TG 366 (768)
T 1m2o_A 351 DQ-IGMSEMKQLTDSTG 366 (768)
T ss_dssp SC-CSHHHHHHHHHHHT
T ss_pred Cc-cChHHHhhHhhcCC
Confidence 76 57788999998884
No 37
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.69 E-value=0.0005 Score=74.84 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=101.9
Q ss_pred eEEEEEeCChhh-hCCCCCCcHHHHHHHHHHHHHHHhccC----CcCCeEEEEEecCCccEE------------------
Q 016164 5 ATLICIDNSEWM-RNGDYAPSRFQAQTEAANLICGAKTQL----NPENTVGVMTMAGKGVRV------------------ 61 (394)
Q Consensus 5 a~vIvIDnSesM-rngD~~PsRl~Aq~~Av~~fv~~k~~~----NPes~VGLVtmag~~a~v------------------ 61 (394)
+.+++||+|..- ++|. +++.++++...+...=.. .|...||||||... ..+
T Consensus 175 ~y~FvIDvs~~av~sg~-----l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~-vh~y~l~~~~~~~q~~vv~dl 248 (766)
T 3eh2_A 175 AFIFMIDVSYNAIRTGL-----VRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKV-LHFYNVKSSLAQPQMMVVSDV 248 (766)
T ss_dssp EEEEEEECSHHHHHTTH-----HHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSS-EEEEECCTTCSSCEEEEECCT
T ss_pred EEEEEEECchhhccchH-----HHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCE-EEEEECCCCCCCceEEEecCh
Confidence 467899999753 3333 667777777766642110 12378999999752 122
Q ss_pred -----------EECCCCCHHHHHHHhcCc------cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecC-CCCCCh-
Q 016164 62 -----------LVTPTSDLGKILACMHGL------EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS-PIKHEK- 122 (394)
Q Consensus 62 -----------LvtlT~D~~kilsaL~~l------~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgS-p~~~d~- 122 (394)
|+++......|.+.|+.+ ....++.++.+|+.|.++|++. +...||++|++| |.+..+
T Consensus 249 ~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG 325 (766)
T 3eh2_A 249 ADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA---ECAGKLFLFHTSLPIAEAPG 325 (766)
T ss_dssp TTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT---TCCEEEEEEECSCCCSSSTT
T ss_pred hhhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCc
Confidence 223333334444445444 2345778999999999999873 478999999988 663211
Q ss_pred ------------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 123 ------------------------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 123 ------------------------~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
+--.++|+++.+++|.||+..|+..- -...-|..+++.++
T Consensus 326 ~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~-vdlatl~~l~~~TG 389 (766)
T 3eh2_A 326 KLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQY-VDVATLSVVPQLTG 389 (766)
T ss_dssp CCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSC-CCHHHHTHHHHHTT
T ss_pred ccccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCC-cChHHHHHHHhhcC
Confidence 12368999999999999999999876 67788888888774
No 38
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.64 E-value=0.0008 Score=73.11 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=97.3
Q ss_pred eEEEEEeCChhhh-CCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEE----------------------
Q 016164 5 ATLICIDNSEWMR-NGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRV---------------------- 61 (394)
Q Consensus 5 a~vIvIDnSesMr-ngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~v---------------------- 61 (394)
+.+++||+|..-. +| =+++.++++...+.. .-.++...||||||... ..+
T Consensus 162 ~yvFvIDvs~~a~~~g-----~l~~~~~sl~~~L~~-lp~~~~~~VG~ITfd~~-vh~y~l~~~~~~~qmlvv~dl~d~f 234 (751)
T 3eh1_A 162 VYLFVLDVSHNAVEAG-----YLTILCQSLLENLDK-LPGDSRTRIGFMTFDST-IHFYNLQEGLSQPQMLIVSDIDDVF 234 (751)
T ss_dssp EEEEEEECSHHHHHHT-----HHHHHHHHHHHHTTT-SSCCTTCEEEEEEESSS-EEEEECCTTCSSCEEEEESCTTCTT
T ss_pred EEEEEEEccHhhhhhh-----HHHHHHHHHHHHHHh-cCCCcCcEEEEEEeCCE-EEEEECCCCcccceeeccccccccC
Confidence 5688999996533 33 245556666555542 22234448999999753 222
Q ss_pred -------EECCCCCHHHHHHHhcCcc------ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChh-----
Q 016164 62 -------LVTPTSDLGKILACMHGLE------IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKK----- 123 (394)
Q Consensus 62 -------LvtlT~D~~kilsaL~~l~------~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~----- 123 (394)
|+++......|-..|+.+. ..-...++.||++|..+|++ ...||++|++|+-+..++
T Consensus 235 ~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~-----~GGrI~~F~sg~pt~GpG~l~~r 309 (751)
T 3eh1_A 235 LPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSP-----TGGRVSVFQTQLPSLGAGLLQSR 309 (751)
T ss_dssp SCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTT-----TCEEEEEEECSCCCSSTTCCCCC
T ss_pred CCChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhc-----CCCEEEEEecCCCCCCCCccccc
Confidence 1223333344444454442 12357899999999999975 568999999887653222
Q ss_pred --------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 124 --------------------VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 124 --------------------~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
--.++|+++.+++|.||+..|+..- -...-|..+++.++
T Consensus 310 ~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~-~dlatl~~l~~~TG 368 (751)
T 3eh1_A 310 EDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQY-SDLASLACMSKYSA 368 (751)
T ss_dssp CCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSC-CCHHHHTHHHHTTT
T ss_pred cccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcc-cChHhHHHHHhhcC
Confidence 1368899999999999999999876 56777888887663
No 39
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.60 E-value=0.00046 Score=75.10 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=100.7
Q ss_pred eEEEEEeCChhh-hCCCCCCcHHHHHHHHHHHHHHHhcc----CCcCCeEEEEEecCCccEE------------------
Q 016164 5 ATLICIDNSEWM-RNGDYAPSRFQAQTEAANLICGAKTQ----LNPENTVGVMTMAGKGVRV------------------ 61 (394)
Q Consensus 5 a~vIvIDnSesM-rngD~~PsRl~Aq~~Av~~fv~~k~~----~NPes~VGLVtmag~~a~v------------------ 61 (394)
+.+++||+|..- ++|. +++.++++...+...=. ..+...||||||... ..+
T Consensus 179 ~y~FvIDvs~~av~sg~-----l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~-vh~y~l~~~~~q~q~~vv~d~ 252 (770)
T 3efo_B 179 AFIFMIDVSYSNIKNGL-----VKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKV-LHFFNVKSNLAQPQMMVVTDV 252 (770)
T ss_dssp EEEEEEECSHHHHHTTH-----HHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSS-EEEEECCTTCSSCEEEEECCT
T ss_pred EEEEEEEcchhhccchH-----HHHHHHHHHHHHHhCCccccccCccceEEEEEeCCE-EEEEeCCCcccCceEEEeccc
Confidence 567899999764 4443 67777777777664211 012369999999743 121
Q ss_pred -----------EECCCCCHHHHHHHhcCc------cccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecC-CCCCChh
Q 016164 62 -----------LVTPTSDLGKILACMHGL------EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS-PIKHEKK 123 (394)
Q Consensus 62 -----------LvtlT~D~~kilsaL~~l------~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgS-p~~~d~~ 123 (394)
|+++......|...|..| ....++.++.+|+.|.++|++. +...||++|++| |.+..++
T Consensus 253 ~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG 329 (770)
T 3efo_B 253 GEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAA---DCPGKLFIFHSSLPTAEAPG 329 (770)
T ss_dssp TSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHH---TCCEEEEEEECSCCCSSSTT
T ss_pred ccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCc
Confidence 122223333444444443 2245678999999999999873 367899999987 6632221
Q ss_pred -------------------------HHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 124 -------------------------VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 124 -------------------------~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
--.++|+++.+++|.||+..|+..- -...-|..+++.++
T Consensus 330 ~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~-vdlatl~~l~~~TG 393 (770)
T 3efo_B 330 KLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQY-VDVASLGLVPQLTG 393 (770)
T ss_dssp CCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSC-CCHHHHTHHHHHTT
T ss_pred cccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCc-cChHHHHHHHhhcC
Confidence 2257899999999999999999876 56788888887774
No 40
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=97.60 E-value=1.2e-05 Score=58.62 Aligned_cols=39 Identities=36% Similarity=0.544 Sum_probs=32.0
Q ss_pred CchHHHHHHHHhcCCCCCCCCCCCCCCCCCCChHHHHHHHHhccccCCC
Q 016164 291 HDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTK 339 (394)
Q Consensus 291 ~e~~~L~~Al~~S~~~~~~~~~~~~~~~~~~e~~~ia~A~~ms~~~~~~ 339 (394)
++|+.||+||++|+|+. +..+||..+.+|||+|||....
T Consensus 5 EDEedlqrALalSRQE~----------dmEDeeadLrrAiqLSmQGss~ 43 (52)
T 2klz_A 5 EDEEDLQRALALSRQEI----------DMEDEEADLRRAIQLSMQGSSR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHH----------CCSSSHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHHHHHHh----------ccchhHHHHHHHHHHHhhcccc
Confidence 35669999999999876 3456889999999999997543
No 41
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.52 E-value=0.0012 Score=71.08 Aligned_cols=160 Identities=10% Similarity=0.107 Sum_probs=101.0
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------------------- 58 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~-------------------------- 58 (394)
.+|+++|.|.||.. =|+..+.....|+++.-.....-++|+.+|.++.
T Consensus 113 Dly~LmD~S~SM~d------di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~ 186 (690)
T 3fcs_B 113 DIYYLMDLSYSMKD------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (690)
T ss_dssp EEEEEEECSGGGHH------HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCC
T ss_pred cEEEEecCCcchHH------HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCC
Confidence 47999999999974 2334444445555544334455799999999842
Q ss_pred ---cEEEECCCCCHHHHHHHhcCccccCccc----HHHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCCC--Ch------
Q 016164 59 ---VRVLVTPTSDLGKILACMHGLEIGGELN----LAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKH--EK------ 122 (394)
Q Consensus 59 ---a~vLvtlT~D~~kilsaL~~l~~~G~~s----L~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~~--d~------ 122 (394)
.+-..+||.|..++...++++.+.|+.+ -..||..|..-.+...-+....|||||+ +.+... |.
T Consensus 187 ~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~ 266 (690)
T 3fcs_B 187 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIV 266 (690)
T ss_dssp CCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred CccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCcccccee
Confidence 1234689999999999999998877533 2344444432112221223466666665 554321 11
Q ss_pred -----------------------hHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCC
Q 016164 123 -----------------------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (394)
Q Consensus 123 -----------------------~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~ 177 (394)
-.+..+.++|+++||.+.+..... .....+.|.+.+. ++.+.++..+.
T Consensus 267 ~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~----~~~~y~~l~~~i~---~s~v~~l~~dS 337 (690)
T 3fcs_B 267 QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTEN----VVNLYQNYSELIP---GTTVGVLSMDS 337 (690)
T ss_dssp SCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGG----GHHHHHHHHHHST---TCEEEEECTTC
T ss_pred cCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEeCC----chhhHHHHHhhcC---Cceeeeecccc
Confidence 137899999999999776665543 3457788877773 45666665543
No 42
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.19 E-value=0.00055 Score=73.74 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=99.0
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------------------- 58 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~-------------------------- 58 (394)
.+|+++|.|.||.. =|+..+.....|+++.-......++|+.+|.++-
T Consensus 106 Dly~LmD~S~SM~d------di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~ 179 (687)
T 3k6s_B 106 DLYYLMDLSYSMLD------DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPP 179 (687)
T ss_dssp EEEEEEECSSTTHH------HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCC
T ss_pred eEEEEEcCCcchHH------HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCc
Confidence 47999999999974 2333444445555555455667899999999842
Q ss_pred --cEEEECCCCCHHHHHHHhcCccccCcccH----HHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCCC--C--------
Q 016164 59 --VRVLVTPTSDLGKILACMHGLEIGGELNL----AAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKH--E-------- 121 (394)
Q Consensus 59 --a~vLvtlT~D~~kilsaL~~l~~~G~~sL----~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~~--d-------- 121 (394)
.+-..+||.|..++...++++.+.|+.+. ..||..|..--+...-+. ..|||||+ +.+.-. |
T Consensus 180 f~f~~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TDa~~H~agDg~l~gi~~ 258 (687)
T 3k6s_B 180 FAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKLGAILT 258 (687)
T ss_dssp CSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECSSCCCCTTGGGGGTCCC
T ss_pred ccceeecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECCCccccCCCccccceec
Confidence 22346799999999999999988776333 333333321012221223 56666665 444321 1
Q ss_pred --------------------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 122 --------------------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 122 --------------------~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
--.+-.+.++|+++||.+.+..... .....+.|.+.+. ++.+.++..+
T Consensus 259 pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~I~~ifavt~~----~~~~y~~l~~~i~---~s~v~~L~~d 326 (687)
T 3k6s_B 259 PNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSR----MVKTYEKLTEIIP---KSAVGELSED 326 (687)
T ss_dssp CCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGG----GHHHHHHHHHHSS---SCCEEECCTT
T ss_pred CCCCccccCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEecc----chhhHHHHHhhcC---Cceeeeeccc
Confidence 1136789999999999776665443 3467888887774 3445554443
No 43
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=97.07 E-value=0.02 Score=58.94 Aligned_cols=165 Identities=11% Similarity=0.118 Sum_probs=108.1
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------------------- 58 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~-------------------------- 58 (394)
.+++++|+|.||.+ =++-.+.....++++.-+.-...++|+.+|.++-
T Consensus 124 DLyyLmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f 197 (454)
T 3vi3_B 124 DLYYLMDLSYSMKD------DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPF 197 (454)
T ss_dssp EEEEEEECSGGGHH------HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCC
T ss_pred eEEEEecCCcchhh------HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCc
Confidence 47899999999974 3556666777788777777788999999999861
Q ss_pred -cEEEECCCCCHHHHHHHhcCccccCcccH----HHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCC--C----------
Q 016164 59 -VRVLVTPTSDLGKILACMHGLEIGGELNL----AAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIK--H---------- 120 (394)
Q Consensus 59 -a~vLvtlT~D~~kilsaL~~l~~~G~~sL----~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~--~---------- 120 (394)
.+-..+||.|..++...+.++.+.|+-+. ..||..|..--+...-++ ..|+|||+ +.+.- .
T Consensus 198 ~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa~fH~agDgkL~GIv~P 276 (454)
T 3vi3_B 198 SYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAGFHFAGDGKLGGIVLP 276 (454)
T ss_dssp SEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBCCTTTTGGGTCCSC
T ss_pred ceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCCCcCcCCCccccceecC
Confidence 12367899999999999999988876333 334443332212222233 77777776 44321 0
Q ss_pred ------------------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhh
Q 016164 121 ------------------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSD 182 (394)
Q Consensus 121 ------------------d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD 182 (394)
|--.+-.+.++|.++||.+-.-- .. ......+.|.+.+ .++.+.++..+...+-+
T Consensus 277 NDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~IFAV---t~-~~~~~Y~~L~~~i---p~s~vg~Ls~dSsNiv~ 349 (454)
T 3vi3_B 277 NDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAV---TE-EFQPVYKELKNLI---PKSAVGTLSANSSNVIQ 349 (454)
T ss_dssp CCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEEEEEE---EG-GGHHHHHHHHHHS---TTEEEEEECTTCTTHHH
T ss_pred CCCccEeCCCcccccccCCCCCHHHHHHHHHhcCCcEEEEE---cC-ccchHHHHHHHhC---CCceeeEccccchhHHH
Confidence 11258899999999999643222 12 2346778887776 34667777665423333
Q ss_pred h
Q 016164 183 V 183 (394)
Q Consensus 183 ~ 183 (394)
+
T Consensus 350 L 350 (454)
T 3vi3_B 350 L 350 (454)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>1p9c_A 26S proteasome non-ATPase regulatory subunit 4; alpha helix, hairpin loop, ligand binding protein; NMR {Homo sapiens} SCOP: j.105.1.1 PDB: 1p9d_S 1uel_B
Probab=96.97 E-value=0.00019 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.8
Q ss_pred CCCCCChHHHHHHHHhccccCC
Q 016164 317 SEVAEDDPELALALQLSMQDGT 338 (394)
Q Consensus 317 ~~~~~e~~~ia~A~~ms~~~~~ 338 (394)
+..|+||++|++|||||||+.+
T Consensus 16 ~~~mteeeqla~ALqMSmq~~~ 37 (45)
T 1p9c_A 16 LSSMTEEEQIAYAMQMSLQGAE 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSS
T ss_pred hhccCchHHHHHHHHhcccccc
Confidence 3578999999999999999664
No 45
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.91 E-value=0.003 Score=60.16 Aligned_cols=73 Identities=8% Similarity=0.131 Sum_probs=53.4
Q ss_pred CCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCC---CcHHHHHHHHHHhcCCCCcEEEEcCCCCchhh
Q 016164 105 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE---GNTEKLEALLAAVNNNDSSHLVHVPPGPNALS 181 (394)
Q Consensus 105 ~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~---~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLs 181 (394)
...+.|||++++..++.. ++..+|+.+++.||+|++||||.... ...+.|+.+.+.+ ++.||.. .. . -|+
T Consensus 8 ~~~k~iillTDG~~~~g~-~p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~t---GG~yf~a-~~-~-~l~ 80 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGP-DPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAG---GGMCRIV-QP-A-DIS 80 (242)
T ss_dssp CCEEEEEEEESSCCCSSS-CHHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHT---TSCEEEE-CG-G-GHH
T ss_pred CCccEEEEEccCCCCCCC-CHHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhc---CCeEEEe-eH-H-HHH
Confidence 467788888899877754 78899999999999999999976421 2247899999776 4556654 33 2 366
Q ss_pred hhh
Q 016164 182 DVL 184 (394)
Q Consensus 182 D~l 184 (394)
+.|
T Consensus 81 ~~~ 83 (242)
T 3rag_A 81 ATA 83 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 46
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=96.87 E-value=0.027 Score=58.32 Aligned_cols=167 Identities=10% Similarity=0.134 Sum_probs=107.2
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCcc-------------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGV------------------------- 59 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a------------------------- 59 (394)
.+|+++|.|.||.+ =++-.+.....+.++.-......++|+.+|.++-.
T Consensus 113 DLy~LmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p 186 (472)
T 3t3p_B 113 DIYYLMDLSYSMKD------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (472)
T ss_dssp EEEEEEECSGGGHH------HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCC
T ss_pred eEEEEEccCcchHH------HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCC
Confidence 47999999999974 34556666777777776777789999999998621
Q ss_pred ----EEEECCCCCHHHHHHHhcCccccCccc----HHHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCC-----------
Q 016164 60 ----RVLVTPTSDLGKILACMHGLEIGGELN----LAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIK----------- 119 (394)
Q Consensus 60 ----~vLvtlT~D~~kilsaL~~l~~~G~~s----L~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~----------- 119 (394)
+-..+||.|..++...++++.+.|+-+ -..||..|..--+...-+....|+|||+ +.+.-
T Consensus 187 ~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv 266 (472)
T 3t3p_B 187 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIV 266 (472)
T ss_dssp CCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred CcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCcccccee
Confidence 124689999999999999998877633 3344444432112221233566777776 33321
Q ss_pred --------------------CChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCch
Q 016164 120 --------------------HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNA 179 (394)
Q Consensus 120 --------------------~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~l 179 (394)
-|--.+-.+.++|.++||.+-. .-.. ......+.|.+.+. ++.+.++..+...
T Consensus 267 ~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~IF---AVt~-~~~~~Y~~L~~~ip---~s~vg~L~~dSsN 339 (472)
T 3t3p_B 267 QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIF---AVTE-NVVNLYQNYSELIP---GTTVGVLSMDSSN 339 (472)
T ss_dssp CCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEEEE---EECG-GGHHHHHHHHHTST---TCEEEECCTTSTT
T ss_pred cCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccEEE---EEec-cchhHHHHHHHhCC---Cceeeeccccchh
Confidence 0112578999999999986432 2222 34567888877663 4666666555433
Q ss_pred hhhhh
Q 016164 180 LSDVL 184 (394)
Q Consensus 180 LsD~l 184 (394)
+-++|
T Consensus 340 iv~LI 344 (472)
T 3t3p_B 340 VLQLI 344 (472)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33433
No 47
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=96.74 E-value=0.04 Score=57.37 Aligned_cols=159 Identities=12% Similarity=0.143 Sum_probs=105.4
Q ss_pred eEEEEEeCChhhhCCCCCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCc--------------------------
Q 016164 5 ATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKG-------------------------- 58 (394)
Q Consensus 5 a~vIvIDnSesMrngD~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~-------------------------- 58 (394)
.+++++|.|.||.+ =++-.+.....+.++.-+.....++|+.+|.++-
T Consensus 134 DLyyLmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~ 207 (503)
T 3v4v_B 134 DLYYLMDLSYSMKD------DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSP 207 (503)
T ss_dssp EEEEEEECSGGGHH------HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCC
T ss_pred eEEEEEecCcchhh------HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCC
Confidence 47999999999974 3556677777788887777788999999998851
Q ss_pred --cEEEECCCCCHHHHHHHhcCccccCcccH----HHHHHHHHHHhhhcCCCCCCeEEEEEe-cCCCC------------
Q 016164 59 --VRVLVTPTSDLGKILACMHGLEIGGELNL----AAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIK------------ 119 (394)
Q Consensus 59 --a~vLvtlT~D~~kilsaL~~l~~~G~~sL----~~gL~iA~lALkhr~~k~~~~RIVlFv-gSp~~------------ 119 (394)
.+-+.++|.|..++...+.++.+.|+.+. ..||..|..--+...=+. ..|+|||+ +.+.-
T Consensus 208 f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~-a~rllV~~TDA~fH~agDgkLaGIv~ 286 (503)
T 3v4v_B 208 FSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRN-VSRLLVFTSDDTFHTAGDGKLGGIFM 286 (503)
T ss_dssp CSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBCCTTGGGTTTCCS
T ss_pred cceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCCc-ceEEEEEECCCCcCcCCCccccceec
Confidence 12257899999999999999988776333 344444432112111122 55777776 33321
Q ss_pred -----C--------------ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCC
Q 016164 120 -----H--------------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (394)
Q Consensus 120 -----~--------------d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~ 177 (394)
+ |--.+-.+.++|.++||.+- |.-.. .....++.|.+.+ .++.+.++..+.
T Consensus 287 pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~~I---FAVt~-~~~~~Y~~L~~~i---p~s~vg~Ls~dS 356 (503)
T 3v4v_B 287 PSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPI---FAVTS-AALPVYQELSKLI---PKSAVGELSEDS 356 (503)
T ss_dssp CCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEEEE---EEECS-SSHHHHHHHHTTS---TTCEEEECCTTS
T ss_pred CCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCeEE---EEEcc-cchhHHHHHHHhC---CCceeeEccccc
Confidence 0 11247789999999999432 44433 3457888887666 346666666654
No 48
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=95.05 E-value=0.015 Score=46.76 Aligned_cols=49 Identities=29% Similarity=0.376 Sum_probs=34.1
Q ss_pred CCchHHHHHHHHhcCCCCCCC----C--CC------C-CCCCCCCChHHHHHHHHhccccCC
Q 016164 290 KHDEGLLQEAIAMSSTPSYPS----G--RD------T-NMSEVAEDDPELALALQLSMQDGT 338 (394)
Q Consensus 290 ~~e~~~L~~Al~~S~~~~~~~----~--~~------~-~~~~~~~e~~~ia~A~~ms~~~~~ 338 (394)
.++|+.|++||.||+++.... . +. . ......+||++|+.||+.||.+.+
T Consensus 9 ~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASLrd~E 70 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESLREAE 70 (81)
T ss_dssp SSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 568889999999999764311 1 00 0 112346789999999999998643
No 49
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=92.98 E-value=0.094 Score=45.57 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=46.7
Q ss_pred hcCCCCCccCCCCCCCHHHHHHHHhcH--HHHHHHHHHHHHHHHHHHhHhhhcccccCCc----cccccccCCCCCCccc
Q 016164 209 ASGASGYEFGVDPNLDPELALALRVSM--EEERARQEAAAKRAAEEAAKKEKQGEQQSSS----QDVTMTDQDSVPASEA 282 (394)
Q Consensus 209 ~~~~~~~efgvDp~~DPELa~Alr~Sl--EEe~~rq~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 282 (394)
++-..+++-.+||++==-|+|-|.--- +|..+|+..+...+....+ ......... ....+.... + .
T Consensus 28 ~~fefgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~~~~e~saa~~~~a---~~~~~~~eeamL~~a~~~~~~~--~---~ 99 (132)
T 1yx4_A 28 SDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIA---TTGTEDSDDALLKMTISQQEFG--R---T 99 (132)
T ss_dssp SSCCSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSS---CCCCCSCHHHHHHHHHHHHHHH--H---S
T ss_pred cccccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccc---ccCCcccHHHHHHHhhcccccC--C---C
Confidence 344567888899999999999974433 3333443333322211111 011000000 000000000 0 0
Q ss_pred ccccccCCCchHHHHHHHHhcCCCC
Q 016164 283 DDKKKTTKHDEGLLQEAIAMSSTPS 307 (394)
Q Consensus 283 ~~~~~~~~~e~~~L~~Al~~S~~~~ 307 (394)
...+..+|+||++|++||+|||++.
T Consensus 100 ~~~d~~~MtEEeqLa~ALqMSMQe~ 124 (132)
T 1yx4_A 100 GLPDLSSMTEEEQIAYAMQMSLQGA 124 (132)
T ss_dssp SCCCSTTSCHHHHHHHHHHHSSSSC
T ss_pred CCCchhhCChHHHHHHHHHhccccc
Confidence 0123356899999999999999865
No 50
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=90.56 E-value=0.27 Score=34.68 Aligned_cols=13 Identities=54% Similarity=0.593 Sum_probs=10.4
Q ss_pred chHHHHHHHHhcC
Q 016164 292 DEGLLQEAIAMSS 304 (394)
Q Consensus 292 e~~~L~~Al~~S~ 304 (394)
||.+|++|++-|+
T Consensus 31 EdellrKAIaESL 43 (45)
T 3a1q_C 31 EEELLRKAIAESL 43 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5678999998775
No 51
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=90.49 E-value=0.073 Score=38.87 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCchHHHHHHHHhcCCCCC
Q 016164 290 KHDEGLLQEAIAMSSTPSY 308 (394)
Q Consensus 290 ~~e~~~L~~Al~~S~~~~~ 308 (394)
++|++-|++|+.|||+...
T Consensus 24 EDeeadLrrAiqLSmQGss 42 (52)
T 2klz_A 24 EDEEADLRRAIQLSMQGSS 42 (52)
T ss_dssp SSSHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHHhhccc
Confidence 3567899999999998764
No 52
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=89.42 E-value=0.44 Score=33.74 Aligned_cols=15 Identities=47% Similarity=0.534 Sum_probs=12.1
Q ss_pred chHHHHHHHHhcCCC
Q 016164 292 DEGLLQEAIAMSSTP 306 (394)
Q Consensus 292 e~~~L~~Al~~S~~~ 306 (394)
||++|++|++-|+..
T Consensus 28 E~~llrKAIaESLn~ 42 (46)
T 2rr9_C 28 EEELLRKAIAESLNS 42 (46)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 677999999988743
No 53
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=84.36 E-value=0.32 Score=34.46 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=16.2
Q ss_pred CCChHHHHHHHHhccccC
Q 016164 320 AEDDPELALALQLSMQDG 337 (394)
Q Consensus 320 ~~e~~~ia~A~~ms~~~~ 337 (394)
|+||+++|.||.||-|..
T Consensus 1 MtEEEq~ALA~kmSeQEA 18 (46)
T 2rr9_C 1 MTEEEQFALALKMSEQEA 18 (46)
T ss_dssp CCSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhHHHH
Confidence 789999999999998864
No 54
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=83.02 E-value=11 Score=30.74 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=18.6
Q ss_pred CCCCCCCHHHHHHHHhcHHHHHHHHH
Q 016164 218 GVDPNLDPELALALRVSMEEERARQE 243 (394)
Q Consensus 218 gvDp~~DPELa~Alr~SlEEe~~rq~ 243 (394)
.++|..-.+|+-+|+.-++....|++
T Consensus 121 ~~~~~~~~~l~~~i~~l~~~~~~~~~ 146 (166)
T 3qhp_A 121 LFEPNNAKDLSAKIDWWLENKLERER 146 (166)
T ss_dssp EECTTCHHHHHHHHHHHHHCHHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHhCHHHHHH
Confidence 46777777899999988875544433
No 55
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=82.50 E-value=0.33 Score=34.24 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=16.8
Q ss_pred CCCChHHHHHHHHhccccC
Q 016164 319 VAEDDPELALALQLSMQDG 337 (394)
Q Consensus 319 ~~~e~~~ia~A~~ms~~~~ 337 (394)
.|+||+++|.|+.||-|..
T Consensus 3 ~mtEEEq~ALA~rmSeQEA 21 (45)
T 3a1q_C 3 LGSEEEQFALALKMSEQEA 21 (45)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhHHHH
Confidence 5899999999999998863
No 56
>1p9c_A 26S proteasome non-ATPase regulatory subunit 4; alpha helix, hairpin loop, ligand binding protein; NMR {Homo sapiens} SCOP: j.105.1.1 PDB: 1p9d_S 1uel_B
Probab=75.00 E-value=0.74 Score=32.97 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=16.4
Q ss_pred CCCchHHHHHHHHhcCCCC
Q 016164 289 TKHDEGLLQEAIAMSSTPS 307 (394)
Q Consensus 289 ~~~e~~~L~~Al~~S~~~~ 307 (394)
+|.|+++|+.||+|||+..
T Consensus 18 ~mteeeqla~ALqMSmq~~ 36 (45)
T 1p9c_A 18 SMTEEEQIAYAMQMSLQGA 36 (45)
T ss_dssp HHHHHHHHHHHHHHHTSSS
T ss_pred ccCchHHHHHHHHhccccc
Confidence 4778889999999999855
No 57
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=71.88 E-value=18 Score=33.92 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 184 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn-nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l 184 (394)
...+|+|+|..... ....+.++++++++. ++.+.+||-|.. .+.|+++++..+-.+ ++..+.+..+ +.+.+
T Consensus 210 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~~--~v~~~g~~~~-~~~~~ 282 (394)
T 2jjm_A 210 SEKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPE----FCTILQLVKNLHIED--RVLFLGKQDN-VAELL 282 (394)
T ss_dssp --CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCTT----HHHHHHHHHTTTCGG--GBCCCBSCSC-THHHH
T ss_pred CCeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCchH----HHHHHHHHHHcCCCC--eEEEeCchhh-HHHHH
Confidence 34578888887643 566778888888775 677777775543 357888887653212 2222323333 55555
Q ss_pred hcCcccc----CCCCCCCchhHhHHHh-----hhcCCCC------CccCCCCCCCHHHHHHHHhcHHHHHHHH
Q 016164 185 LSTPIFT----GDGEGGSGFAAAAAAA-----AASGASG------YEFGVDPNLDPELALALRVSMEEERARQ 242 (394)
Q Consensus 185 ~sspi~~----g~~~~~~~~~~~~~~~-----~~~~~~~------~efgvDp~~DPELa~Alr~SlEEe~~rq 242 (394)
..+.|+- .|+.+..-..+.+.|. ..++-.. ..|=++|..-.+|+-||+.-++....|+
T Consensus 283 ~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~ 355 (394)
T 2jjm_A 283 AMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHR 355 (394)
T ss_dssp HTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHH
T ss_pred HhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHH
Confidence 5554432 2221100011111111 0111111 1122566666789999988777554443
No 58
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=66.97 E-value=25 Score=32.29 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=47.0
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC---CceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN---SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALS 181 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn---nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLs 181 (394)
....+|+|+|..... ....+.++++++++. ++.+.++|-|.. +.++.+++..+-.+ ++..+....+ +.
T Consensus 194 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~-----~~~~~~~~~~~~~~--~v~~~g~~~~-~~ 265 (374)
T 2iw1_A 194 EQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP-----RKFEALAEKLGVRS--NVHFFSGRND-VS 265 (374)
T ss_dssp TTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC-----HHHHHHHHHHTCGG--GEEEESCCSC-HH
T ss_pred CCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH-----HHHHHHHHHcCCCC--cEEECCCccc-HH
Confidence 345778888876543 455667777777654 788888877653 46788887764222 3333333333 55
Q ss_pred hhhhcCccc
Q 016164 182 DVLLSTPIF 190 (394)
Q Consensus 182 D~l~sspi~ 190 (394)
+.+..+.++
T Consensus 266 ~~~~~ad~~ 274 (374)
T 2iw1_A 266 ELMAAADLL 274 (374)
T ss_dssp HHHHHCSEE
T ss_pred HHHHhcCEE
Confidence 666555553
No 59
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=66.25 E-value=9.7 Score=32.10 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=29.2
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
.+.+|+|+|..... ....+.++++++ .++.+.+||-|.... .++.+++
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~~----~l~~~~~ 70 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKGD----HAERYAR 70 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTTS----THHHHHH
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccHH----HHHHHHH
Confidence 45567787776532 334444555544 378888888776652 5666665
No 60
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=65.33 E-value=57 Score=30.79 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=45.1
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC----CceEEEEEe----CCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCC
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN----SVALDIVNF----GEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 177 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn----nI~VdiI~f----G~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~ 177 (394)
...+|+|+|..... ....+.++++++++. ++.+.+||- |... +.|+.+++..+-.++-++.---+..
T Consensus 242 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~----~~l~~~~~~~~l~~~v~~~g~~~~~ 317 (438)
T 3c48_A 242 HTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATP----DTYRHMAEELGVEKRIRFLDPRPPS 317 (438)
T ss_dssp SSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC----------CHHHHHHHHTTCTTTEEEECCCCHH
T ss_pred CCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHH----HHHHHHHHHcCCCCcEEEcCCCChH
Confidence 45678888876543 566788888888775 677777775 4333 4788888776533333333221212
Q ss_pred chhhhhhhcCcc
Q 016164 178 NALSDVLLSTPI 189 (394)
Q Consensus 178 ~lLsD~l~sspi 189 (394)
-+.+.+..+.+
T Consensus 318 -~~~~~~~~adv 328 (438)
T 3c48_A 318 -ELVAVYRAADI 328 (438)
T ss_dssp -HHHHHHHHCSE
T ss_pred -HHHHHHHhCCE
Confidence 24555555544
No 61
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=61.67 E-value=35 Score=31.40 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=34.1
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHH
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALL 159 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~ 159 (394)
...+|+|+|..... ....+.+++++|++. ++.+.|+|-|.. .+.++.++
T Consensus 197 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~ 248 (394)
T 3okp_A 197 TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRY----ESTLRRLA 248 (394)
T ss_dssp TCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTT----HHHHHHHT
T ss_pred CceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchH----HHHHHHHH
Confidence 34678888886543 566788888888775 677777765543 35777776
No 62
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=59.54 E-value=8.4 Score=30.78 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHhcHHHHHHHH
Q 016164 220 DPNLDPELALALRVSMEEERARQ 242 (394)
Q Consensus 220 Dp~~DPELa~Alr~SlEEe~~rq 242 (394)
|.++||+|.-||-.||.|-..++
T Consensus 51 ~edeD~DLKAAIaASLrd~E~qK 73 (81)
T 1q0v_A 51 EEEEDPDLKAAIQESLREAEEAK 73 (81)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHHH
Confidence 55789999999999998655443
No 63
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=55.96 E-value=41 Score=31.72 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=52.0
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCC-CcHHHHHHHHHHhcCCCCcEEEE-cCCCC-ch
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDE-GNTEKLEALLAAVNNNDSSHLVH-VPPGP-NA 179 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~-~n~~~l~~~~~~vn~~~~S~~v~-vp~g~-~l 179 (394)
....+|+|+|..... ....+.++++.+++. ++++.+||-|.... +..+.++.+++..+-.++-+|+- ++.-+ .-
T Consensus 229 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~ 308 (416)
T 2x6q_A 229 PEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHARE 308 (416)
T ss_dssp TTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHH
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHH
Confidence 345678888876543 567788888888775 78888888886531 12457888888876544545543 33311 12
Q ss_pred hhhhhhcCcc
Q 016164 180 LSDVLLSTPI 189 (394)
Q Consensus 180 LsD~l~sspi 189 (394)
+.+.+..+-+
T Consensus 309 ~~~~~~~ad~ 318 (416)
T 2x6q_A 309 VNAFQRASDV 318 (416)
T ss_dssp HHHHHHHCSE
T ss_pred HHHHHHhCCE
Confidence 4455544444
No 64
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=53.12 E-value=67 Score=30.98 Aligned_cols=77 Identities=5% Similarity=-0.056 Sum_probs=49.9
Q ss_pred eEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcE-EEEcCCCCchhhhhhh
Q 016164 108 QRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH-LVHVPPGPNALSDVLL 185 (394)
Q Consensus 108 ~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~-~v~vp~g~~lLsD~l~ 185 (394)
..+|+|+|..... ....+.++++++++.++.+-|||-|... -.+.|++++.... ++-+ +.-. ..+.+.+.+.
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~--~~~~l~~~~~~~~--~~v~~~~g~--~~~~~~~~~~ 364 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVA--LEGALLAAASRHH--GRVGVAIGY--NEPLSHLMQA 364 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHH--HHHHHHHHHHHTT--TTEEEEESC--CHHHHHHHHH
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchH--HHHHHHHHHHhCC--CcEEEecCC--CHHHHHHHHh
Confidence 4488898887654 5667888888998889999999987531 1357888887662 3333 2222 2233556665
Q ss_pred cCccc
Q 016164 186 STPIF 190 (394)
Q Consensus 186 sspi~ 190 (394)
.+.++
T Consensus 365 ~adv~ 369 (485)
T 1rzu_A 365 GCDAI 369 (485)
T ss_dssp HCSEE
T ss_pred cCCEE
Confidence 55553
No 65
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=52.90 E-value=8.7 Score=24.35 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=12.3
Q ss_pred HHHHHHHHhcHHHHHHH
Q 016164 225 PELALALRVSMEEERAR 241 (394)
Q Consensus 225 PELa~Alr~SlEEe~~r 241 (394)
-||++||-+|+-|..+|
T Consensus 5 EEl~LAlAlS~sEae~~ 21 (26)
T 2d3g_P 5 EELQLALALSQSEAEEK 21 (26)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47888888887776554
No 66
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=51.24 E-value=1e+02 Score=29.70 Aligned_cols=79 Identities=9% Similarity=0.021 Sum_probs=50.3
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhhh
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLL 185 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l~ 185 (394)
...+|+|+|..... ....+.++++++++.++.+.|||-|... -.+.|++++.... ++-++ ......+.+.+.+.
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~--~~~~l~~~~~~~~--~~v~~-~~g~~~~~~~~~~~ 365 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV--LQEGFLAAAAEYP--GQVGV-QIGYHEAFSHRIMG 365 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHH--HHHHHHHHHHHST--TTEEE-EESCCHHHHHHHHH
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchH--HHHHHHHHHHhCC--CcEEE-eCCCCHHHHHHHHH
Confidence 45678888876543 5667888889998889999999988632 1357888887652 33221 22222234556665
Q ss_pred cCccc
Q 016164 186 STPIF 190 (394)
Q Consensus 186 sspi~ 190 (394)
.+.++
T Consensus 366 ~adv~ 370 (485)
T 2qzs_A 366 GADVI 370 (485)
T ss_dssp HCSEE
T ss_pred hCCEE
Confidence 55553
No 67
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=48.77 E-value=81 Score=29.35 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=38.4
Q ss_pred EEEEEecCCC-CC-ChhHHHHHHHHHHh----CCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 109 RIIVFVGSPI-KH-EKKVLEMIGRKLKK----NSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 109 RIVlFvgSp~-~~-d~~~l~~~akkLKk----nnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
.+|+|+|... .. +...+.++++++++ .++++.+||=|... -.+.|+.+++..+
T Consensus 252 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~--~~~~l~~~~~~~~ 310 (439)
T 3fro_A 252 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPE--LEGWARSLEEKHG 310 (439)
T ss_dssp EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHH--HHHHHHHHHHHCT
T ss_pred cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChh--HHHHHHHHHhhcC
Confidence 7888999876 44 67788899999988 56777777755432 1367888876653
No 68
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=48.75 E-value=66 Score=29.75 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=32.6
Q ss_pred EEEEEecCC-CCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 109 RIIVFVGSP-IKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 109 RIVlFvgSp-~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
.+|+|+|.. ... ....+.++++++++. ++.+.+||-|.. +.++.+++..
T Consensus 209 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~-----~~l~~~~~~~ 261 (406)
T 2gek_A 209 RTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE-----DELREQAGDL 261 (406)
T ss_dssp CEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH-----HHHHHHTGGG
T ss_pred eEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH-----HHHHHHHHhc
Confidence 578888887 443 566788888888875 566666655432 4666666544
No 69
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=48.12 E-value=76 Score=28.55 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=45.4
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcC
Q 016164 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 174 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp 174 (394)
..-++.|+.||.. |-..+.+.++.|++.+|..++--.|.. ...+++..|++.....+-.-+|.+-
T Consensus 11 ~~P~V~IimGS~S--D~~v~~~a~~~l~~~gi~~ev~V~saH--R~p~~l~~~~~~a~~~g~~ViIa~A 75 (173)
T 4grd_A 11 SAPLVGVLMGSSS--DWDVMKHAVAILQEFGVPYEAKVVSAH--RMPDEMFDYAEKARERGLRAIIAGA 75 (173)
T ss_dssp SSCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHHTTTTCSEEEEEE
T ss_pred CCCeEEEEeCcHh--HHHHHHHHHHHHHHcCCCEEEEEEccc--cCHHHHHHHHHHHHhcCCeEEEEec
Confidence 4446677777764 667788899999999999876666655 4678888888877644434444443
No 70
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=48.04 E-value=29 Score=29.56 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=34.7
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
..++|+|+.+|+...++.-...+++.|++.++.|.++.+...
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 44 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA 44 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc
Confidence 456788888998766777777889999999999999999876
No 71
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=47.24 E-value=67 Score=28.61 Aligned_cols=62 Identities=8% Similarity=0.129 Sum_probs=39.4
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEc
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~v 173 (394)
.++.|+.||.. |-....++++.|++.||..++--.|.. ...+.+..|++.....+-.-||.+
T Consensus 4 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~SaH--R~p~~~~~~~~~a~~~g~~ViIa~ 65 (163)
T 3ors_A 4 MKVAVIMGSSS--DWKIMQESCNMLDYFEIPYEKQVVSAH--RTPKMMVQFASEARERGINIIIAG 65 (163)
T ss_dssp CCEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEECCc--CCHHHHHHHHHHHHhCCCcEEEEE
Confidence 45666667654 566677888888888888776544533 467788888776654333334433
No 72
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=46.99 E-value=66 Score=29.00 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=41.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~v 173 (394)
++.|+.||.. |-....++++.|++.||.+++--.|.. ...+.+..|++.....+-.-||.+
T Consensus 14 ~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~ev~V~SaH--R~p~~~~~~~~~a~~~g~~ViIa~ 74 (174)
T 3kuu_A 14 KIAIVMGSKS--DWATMQFAADVLTTLNVPFHVEVVSAH--RTPDRLFSFAEQAEANGLHVIIAG 74 (174)
T ss_dssp CEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHTTTTTCSEEEEE
T ss_pred cEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEccc--CCHHHHHHHHHHHHhCCCcEEEEE
Confidence 5677777754 566778888888999998876555544 468888888876654333344444
No 73
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=46.90 E-value=38 Score=30.16 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=44.1
Q ss_pred eEEEEEecCCCCCC-hhHHHHHHHHHHhCCceEEEEEeCCCCC-------CcHHHHHHHHHHhcCCCCcEEEEcCC
Q 016164 108 QRIIVFVGSPIKHE-KKVLEMIGRKLKKNSVALDIVNFGEDDE-------GNTEKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 108 ~RIVlFvgSp~~~d-~~~l~~~akkLKknnI~VdiI~fG~e~~-------~n~~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
++|+|++||+.... ...+.+.+.++.+.++.|.+|.+.+--. ...+..++|.+++..-| .+|.+-|
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD--~~ii~tP 76 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSD--AVLAITP 76 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSS--EEEEECC
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCC--cEEEech
Confidence 67889999988652 3456666777778899999999875211 12356777888886433 3555444
No 74
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=46.77 E-value=79 Score=28.24 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=43.2
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
.++.|+.||.. |-....++++.|++.||..++--.|.. ...+.+..|++.....+-.-||.+--
T Consensus 6 p~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~SaH--Rtp~~l~~~~~~~~~~g~~ViIa~AG 69 (166)
T 3oow_A 6 VQVGVIMGSKS--DWSTMKECCDILDNLGIGYECEVVSAH--RTPDKMFDYAETAKERGLKVIIAGAG 69 (166)
T ss_dssp EEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCTT--TCHHHHHHHHHHTTTTTCCEEEEEEC
T ss_pred CeEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEcCc--CCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 36777777754 566778888888999998776555544 46788888887775433344444433
No 75
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=46.34 E-value=58 Score=30.51 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=30.4
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
.||+||.| +.+ +.+|=+-+|+.|+..|..|.|+-++...
T Consensus 86 ~~vlVlcG-~GN-NGGDGlv~AR~L~~~G~~V~v~~~~~~~ 124 (259)
T 3d3k_A 86 PTVALLCG-PHV-KGAQGISCGRHLANHDVQVILFLPNFVK 124 (259)
T ss_dssp CEEEEEEC-SSH-HHHHHHHHHHHHHHTTCEEEEECCBCSS
T ss_pred CeEEEEEC-CCC-CHHHHHHHHHHHHHCCCeEEEEEecCCC
Confidence 57777655 443 3678899999999999999999888543
No 76
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=46.13 E-value=82 Score=28.59 Aligned_cols=67 Identities=9% Similarity=0.174 Sum_probs=44.6
Q ss_pred CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcC
Q 016164 104 KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 174 (394)
Q Consensus 104 k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp 174 (394)
+++-..+.|+.||.. |-.-..++++.|++.||..++--.|.. ...+.+.+|+++....+-.-||.+-
T Consensus 10 ~~~~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~SaH--R~p~~l~~~~~~a~~~g~~ViIa~A 76 (183)
T 1o4v_A 10 HHHVPRVGIIMGSDS--DLPVMKQAAEILEEFGIDYEITIVSAH--RTPDRMFEYAKNAEERGIEVIIAGA 76 (183)
T ss_dssp ----CEEEEEESCGG--GHHHHHHHHHHHHHTTCEEEEEECCTT--TCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred ccCCCeEEEEeccHH--HHHHHHHHHHHHHHcCCCeEEEEEccc--CCHHHHHHHHHHHHhCCCcEEEEec
Confidence 345567777777764 667788999999999999877666654 4688889998766543333444443
No 77
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=45.63 E-value=29 Score=30.87 Aligned_cols=44 Identities=7% Similarity=0.206 Sum_probs=30.3
Q ss_pred CCCCeEEEEEecCCCCCC-hhHH-HHHHH----HHHhC--CceEEEEEeCCC
Q 016164 104 KKQQQRIIVFVGSPIKHE-KKVL-EMIGR----KLKKN--SVALDIVNFGED 147 (394)
Q Consensus 104 k~~~~RIVlFvgSp~~~d-~~~l-~~~ak----kLKkn--nI~VdiI~fG~e 147 (394)
+.+-.||++|+||+.... ...+ ..+++ .|++. ++.|.+|-+++.
T Consensus 8 ~~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~ 59 (191)
T 3k1y_A 8 HSHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSEL 59 (191)
T ss_dssp -CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred hhhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhC
Confidence 457789999999998752 2233 34444 56665 899999998764
No 78
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=45.06 E-value=70 Score=28.70 Aligned_cols=66 Identities=6% Similarity=0.066 Sum_probs=44.8
Q ss_pred CCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcC
Q 016164 105 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 174 (394)
Q Consensus 105 ~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp 174 (394)
+-+.++.|+.||.. |-.-..++++.|++.||..++--.|.. ...+.+.+|.+.....+-.-||.+-
T Consensus 9 ~~~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~SaH--R~p~~l~~~~~~a~~~g~~ViIa~A 74 (170)
T 1xmp_A 9 HMKSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSAH--RTPDYMFEYAETARERGLKVIIAGA 74 (170)
T ss_dssp --CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred cCCCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEecc--CCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 34556777777764 667788999999999999886655554 4788899998766543333444443
No 79
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=44.30 E-value=22 Score=30.50 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=31.1
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
++|+++.+|+...+..-...+++.+++.++.|.++.+.+.
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 45 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAV 45 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCE
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhc
Confidence 3788888998444555566778888889999999998764
No 80
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=43.72 E-value=26 Score=32.06 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=42.5
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchhhhhhhc
Q 016164 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLS 186 (394)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lLsD~l~s 186 (394)
..++|+|+|.... .+.+..+++.+++-++++.+||-|.. .+.++++++..+ ++-+|.---+... |.+.+..
T Consensus 161 ~~~~i~~vG~~~~--~Kg~~~li~a~~~~~~~l~i~G~g~~----~~~l~~~~~~~~--~~v~~~g~~~~~~-l~~~~~~ 231 (342)
T 2iuy_A 161 KEDFLLFMGRVSP--HKGALEAAAFAHACGRRLVLAGPAWE----PEYFDEITRRYG--STVEPIGEVGGER-RLDLLAS 231 (342)
T ss_dssp CCSCEEEESCCCG--GGTHHHHHHHHHHHTCCEEEESCCCC----HHHHHHHHHHHT--TTEEECCCCCHHH-HHHHHHH
T ss_pred CCCEEEEEecccc--ccCHHHHHHHHHhcCcEEEEEeCccc----HHHHHHHHHHhC--CCEEEeccCCHHH-HHHHHHh
Confidence 4457889888653 34444444444444899999987753 357888887764 3333322122222 4555555
Q ss_pred Ccc
Q 016164 187 TPI 189 (394)
Q Consensus 187 spi 189 (394)
+-+
T Consensus 232 adv 234 (342)
T 2iuy_A 232 AHA 234 (342)
T ss_dssp CSE
T ss_pred CCE
Confidence 544
No 81
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=43.12 E-value=42 Score=31.20 Aligned_cols=56 Identities=18% Similarity=0.139 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhcCCCCC-----CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 90 GIQVAQLALKHRQNKKQ-----QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 90 gL~iA~lALkhr~~k~~-----~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
|..+|...+++.+.... ..||+||.| +.+ +.+|=+-+|+.|+..|..|.|+-++..
T Consensus 36 g~ava~~i~~~~~~~~~~~~~~~~~v~VlcG-~GN-NGGDGlv~AR~L~~~G~~V~v~~~~~~ 96 (246)
T 1jzt_A 36 GFSVAQAVCRQFPLRGKTETEKGKHVFVIAG-PGN-NGGDGLVCARHLKLFGYNPVVFYPKRS 96 (246)
T ss_dssp HHHHHHHHHHHSCCSSCCHHHHTCEEEEEEC-SSH-HHHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred HHHHHHHHHHHccccccccccCCCeEEEEEC-CCC-CHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 45566666665432101 157777655 433 467889999999999999999877763
No 82
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=42.58 E-value=26 Score=30.51 Aligned_cols=40 Identities=5% Similarity=0.063 Sum_probs=32.0
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
++|+++.+|+...+..-...+++.+++.++.|.+|.+...
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 5788888999444555556778888889999999999875
No 83
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=42.20 E-value=21 Score=29.15 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=30.9
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
++|+|+.+|+...+..-...+++.|+..++.|.++.+...
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~ 40 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASV 40 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhC
Confidence 3677888998655566666778888888999999987654
No 84
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=42.16 E-value=25 Score=28.85 Aligned_cols=40 Identities=8% Similarity=0.302 Sum_probs=31.3
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
++|+|+.+|....+..-...+++.|++.++.|+++.+.+.
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADA 41 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTB
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhC
Confidence 3677777887555566667788899999999999988764
No 85
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=42.06 E-value=1e+02 Score=27.29 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=33.3
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcC
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 164 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (394)
++.|+.||.. |-....++++.|++.||..++--.|.. ...+.+..|++....
T Consensus 4 ~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~saH--R~p~~~~~~~~~a~~ 55 (159)
T 3rg8_A 4 LVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGSAH--KTAEHVVSMLKEYEA 55 (159)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCTT--TCHHHHHHHHHHHHT
T ss_pred eEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEccc--CCHHHHHHHHHHhhh
Confidence 4556666653 556677777777788887765444433 467777777766543
No 86
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=41.93 E-value=37 Score=32.73 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=30.3
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
..||+||.| +.+ +.+|=+-+|+.|+..|+.|.|+-++..
T Consensus 132 ~~~vlVlcG-~GN-NGGDGlv~AR~L~~~G~~V~V~~~~~~ 170 (306)
T 3d3j_A 132 RPTVALLCG-PHV-KGAQGISCGRHLANHDVQVILFLPNFV 170 (306)
T ss_dssp CCEEEEEEC-SSH-HHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CCeEEEEEC-CCC-CHHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 357776655 544 367889999999999999999888854
No 87
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=41.53 E-value=27 Score=29.59 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=32.5
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
++|+|+.+|+...++.-...+++.|++.++.|.++.+....
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~ 41 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVD 41 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence 35777778987666777778899999999999999887654
No 88
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=41.51 E-value=22 Score=26.98 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=22.5
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHhhc
Q 016164 357 VSSILASLPGVDPEDPSVKDVLTSMQN 383 (394)
Q Consensus 357 l~s~l~~lpgvdpn~~~i~~~~~~~~~ 383 (394)
+...|..+|||||.||.=+.+|.-|.+
T Consensus 31 V~rfLs~~eg~d~~d~~r~rLl~HL~~ 57 (64)
T 2db7_A 31 VARYLSIIEGLDASDPLRVRLVSHLNN 57 (64)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 457889999999999988888877754
No 89
>3qbr_A SJA, sjchgc06286 protein; helical bundle, BCL-2-like fold, apoptosis; HET: NHE; 2.60A {Schistosoma japonicum}
Probab=40.90 E-value=11 Score=34.30 Aligned_cols=30 Identities=17% Similarity=0.461 Sum_probs=26.1
Q ss_pred CCHHHHHHHHhcCCCCC-CCChHHHHHHHHhh
Q 016164 352 ADQAFVSSILASLPGVD-PEDPSVKDVLTSMQ 382 (394)
Q Consensus 352 ~d~~fl~s~l~~lpgvd-pn~~~i~~~~~~~~ 382 (394)
+|.++|..|+.+ |||| |+||..|+++..|.
T Consensus 36 ~~~~~~~~~~~~-~~~~l~~dp~~~~v~~~L~ 66 (179)
T 3qbr_A 36 QDTDYLTDLLDN-TNIDLTCVPNGQEIIHSLL 66 (179)
T ss_dssp HHHHHHHHHHHH-HTCCCCCCTTHHHHHHHHH
T ss_pred ccchHHHHHHcC-CCCCCCCCCChHHHHHHHH
Confidence 578899999876 8999 89999999988875
No 90
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=39.33 E-value=99 Score=28.02 Aligned_cols=63 Identities=6% Similarity=0.115 Sum_probs=43.0
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 174 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp 174 (394)
.++.|+.||.. |-....++++.|++.||..++--.|.. ...+.+..|.+.....+-.-||.+-
T Consensus 22 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~SaH--R~p~~l~~~~~~a~~~g~~ViIa~A 84 (182)
T 1u11_A 22 PVVGIIMGSQS--DWETMRHADALLTELEIPHETLIVSAH--RTPDRLADYARTAAERGLNVIIAGA 84 (182)
T ss_dssp CSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CEEEEEECcHH--HHHHHHHHHHHHHHcCCCeEEEEEccc--CCHHHHHHHHHHHHhCCCcEEEEec
Confidence 35777777764 667788889999999999776555554 4688888888765543333444443
No 91
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=39.32 E-value=1.6e+02 Score=24.27 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=32.7
Q ss_pred eEEEEEecCCC-CC-ChhHHHHHHHHHH--hC--CceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 108 QRIIVFVGSPI-KH-EKKVLEMIGRKLK--KN--SVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 108 ~RIVlFvgSp~-~~-d~~~l~~~akkLK--kn--nI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
..+|+|+|... .. ....+.+++++++ +. ++++.+||-|... ..+.++.+++..
T Consensus 36 ~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~--~~~~l~~~~~~~ 94 (200)
T 2bfw_A 36 GVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPE--LEGWARSLEEKH 94 (200)
T ss_dssp CEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHH--HHHHHHHHHHHC
T ss_pred CCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChH--HHHHHHHHHHhc
Confidence 34777888766 33 5667788888885 43 5666666554411 235677777654
No 92
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=39.03 E-value=65 Score=29.03 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=27.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
++.|+.||.. |-....++++.|++.||..++--.|.. ...+.+..|++...
T Consensus 9 ~V~IimgS~S--D~~v~~~a~~~L~~~gi~~ev~V~SaH--R~p~~~~~~~~~a~ 59 (174)
T 3lp6_A 9 RVGVIMGSDS--DWPVMADAAAALAEFDIPAEVRVVSAH--RTPEAMFSYARGAA 59 (174)
T ss_dssp SEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHHH
T ss_pred eEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEECCC--CCHHHHHHHHHHHH
Confidence 4555555543 445556666666666666554444432 35566666655443
No 93
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=38.86 E-value=42 Score=29.73 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=28.8
Q ss_pred CCCCeEEEEEecCCCCC------ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 104 KKQQQRIIVFVGSPIKH------EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 104 k~~~~RIVlFvgSp~~~------d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
++...+|+++.|||.-. +..-+..+++.+++.+..|.+|-+....
T Consensus 9 ~~~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~ 59 (204)
T 2amj_A 9 HHGSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDY 59 (204)
T ss_dssp ---CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred ccCCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccc
Confidence 45678999999999832 1222334566677779999999998754
No 94
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=38.51 E-value=1.5e+02 Score=26.29 Aligned_cols=113 Identities=4% Similarity=0.005 Sum_probs=66.5
Q ss_pred CcHHHHHHHHHHHHHHH-hccCCcCCeEEEEEecCCccEEEECCCCC-HHHHHHHhcC--c---c----ccCcccHHHHH
Q 016164 23 PSRFQAQTEAANLICGA-KTQLNPENTVGVMTMAGKGVRVLVTPTSD-LGKILACMHG--L---E----IGGELNLAAGI 91 (394)
Q Consensus 23 PsRl~Aq~~Av~~fv~~-k~~~NPes~VGLVtmag~~a~vLvtlT~D-~~kilsaL~~--l---~----~~G~~sL~~gL 91 (394)
++-..+...+++.+++. ..+-+...+||++..+.... +.+.+ ..-++.+|.. + + ..+..+...+.
T Consensus 108 ~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~----~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 183 (306)
T 8abp_A 108 LAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL----DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 183 (306)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTS----HHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCC----hHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCChHHHH
Confidence 57888888899988865 22222234788887544320 00001 1113333432 1 1 24667788898
Q ss_pred HHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCc---eEEEEEeCCC
Q 016164 92 QVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV---ALDIVNFGED 147 (394)
Q Consensus 92 ~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI---~VdiI~fG~e 147 (394)
+.+...|...+ ...-|+||.. +..-..-+.+.|++.|+ .|.||||...
T Consensus 184 ~~~~~~l~~~~---~~~a~~i~~~-----nD~~A~g~~~al~~~g~~v~di~vvG~D~~ 234 (306)
T 8abp_A 184 DAANSMLVQHP---EVKHWLIVGM-----NDSTVLGGVRATEGQGFKAADIIGIGINGV 234 (306)
T ss_dssp HHHHHHHTTCT---TCSEEEEECS-----SHHHHHHHHHHHHHTTCCGGGEEEEEESSG
T ss_pred HHHHHHHHhCC---CCceEEEEeC-----CcHHHHHHHHHHHHcCCCCCceEEEEeCcH
Confidence 88888886532 2233345522 23445578888999999 5999999754
No 95
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=37.73 E-value=57 Score=30.86 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCC---CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 90 GIQVAQLALKHRQN---KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 90 gL~iA~lALkhr~~---k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
|..+|...+++.+. .++..||+||.| +.+ +.+|=+-+|+.|+..|..|.|+-++.
T Consensus 59 G~ava~~i~~~~~~~~~~~~~~~VlVlcG-~GN-NGGDGlv~AR~L~~~G~~V~V~~~~~ 116 (265)
T 2o8n_A 59 GLSCATAIAKAYPPTSMSKSPPTVLVICG-PGN-NGGDGLVCARHLKLFGYQPTIYYPKR 116 (265)
T ss_dssp HHHHHHHHHHHSCGGGSSSSSCEEEEEEC-SSH-HHHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHHcccccccCCCCeEEEEEC-CCC-CHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 45555555554321 112358777655 433 46788999999999999999987775
No 96
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=37.60 E-value=34 Score=29.18 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=30.8
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKk-nnI~VdiI~fG~e 147 (394)
++|+++.+|+...+..-...+++.+++ .++.|+++.+...
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~ 42 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPET 42 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCC
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcccc
Confidence 368888899744455555677888888 8999999999876
No 97
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=35.76 E-value=26 Score=27.00 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=28.9
Q ss_pred CCCChHHHHHHHH-----hccccCCCCCCCcchhhhhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHhh
Q 016164 319 VAEDDPELALALQ-----LSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQ 382 (394)
Q Consensus 319 ~~~e~~~ia~A~~-----ms~~~~~~~~~~~~~~~~~~~d~~fl~s~l~~lpgvdpn~~~i~~~~~~~~ 382 (394)
..+++|.++++|+ ..|+++.-. .-..++++||..++..+. ||.|++.+..|.
T Consensus 6 ~e~~ee~~~~~m~dPEi~~im~DP~~~----~~lq~~~~NP~~~~k~~~--------nP~v~~~i~kl~ 62 (71)
T 2llw_A 6 NETPEETYQRAMKDPEVAAIMQDPVMQ----SILQQAQQNPAALQEHMK--------NPEVFKKIQTLI 62 (71)
T ss_dssp CSCHHHHHHHHHHSHHHHHHHTCTHHH----HHHHHHHHCHHHHHHHHH--------SHHHHHHHHHHH
T ss_pred CCCcHHHHHHHhcCHHHHHHhCCHHHH----HHHHHHHHCHHHHHHHHh--------CHHHHHHHHHHH
Confidence 3456777777775 233332111 234445556666666654 577777776664
No 98
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=34.06 E-value=1.5e+02 Score=26.51 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=24.7
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
++.|+.||.. |-....++++.|++.||.+++--.|.. ...+.+..|++..
T Consensus 8 ~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~SaH--R~p~~~~~~~~~a 57 (169)
T 3trh_A 8 FVAILMGSDS--DLSTMETAFTELKSLGIPFEAHILSAH--RTPKETVEFVENA 57 (169)
T ss_dssp EEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHH
T ss_pred cEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEccc--CCHHHHHHHHHHH
Confidence 3444445432 344455555566666666554333332 3455555555443
No 99
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=34.03 E-value=2.1e+02 Score=25.90 Aligned_cols=60 Identities=7% Similarity=0.076 Sum_probs=38.0
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEc
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 173 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~v 173 (394)
+-|+.||.. |-..+.++++.|++.+|..++--.+.. .+.+++..|++.....+-.-+|.+
T Consensus 25 V~IimGS~S--D~~v~~~a~~~L~~~gI~~e~~V~SAH--Rtp~~l~~~~~~a~~~g~~ViIa~ 84 (181)
T 4b4k_A 25 VGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSAH--RTPDYMFEYAETARERGLKVIIAG 84 (181)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred EEEEECCHh--HHHHHHHHHHHHHHcCCCeeEEEEccc--cChHHHHHHHHHHHhcCceEEEEe
Confidence 445556653 556677788888888888766555554 367777777776654333344444
No 100
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=33.77 E-value=1.3e+02 Score=24.12 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=30.3
Q ss_pred eEEEEEecCCCC----CChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 108 QRIIVFVGSPIK----HEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 108 ~RIVlFvgSp~~----~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
.+.||+=.+.++ +.-+.|..+.+++++.|+.+.+++.....
T Consensus 48 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 92 (130)
T 2kln_A 48 VEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDL 92 (130)
T ss_dssp CEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSHH
T ss_pred ceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 345555556554 24568889999999999999999886544
No 101
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=33.74 E-value=45 Score=30.30 Aligned_cols=41 Identities=2% Similarity=0.141 Sum_probs=31.5
Q ss_pred CeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 107 QQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 107 ~~RIVlFvgSp~~~--d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
.++|+++.|||... +..-...+++.|++.+..|.+|-+.+.
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 36899999999864 233344668888888999999999764
No 102
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=32.94 E-value=97 Score=24.96 Aligned_cols=56 Identities=18% Similarity=0.351 Sum_probs=39.5
Q ss_pred CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 104 KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 104 k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
|...+.+|+||.+.. ..+....-..+||++|.-|++---... +=+...+.|..+..
T Consensus 48 kdngkplvvfvngas---qndvnefqneakkegvsydvlkstdpe-eltqrvreflktag 103 (112)
T 2lnd_A 48 KDNGKPLVVFVNGAS---QNDVNEFQNEAKKEGVSYDVLKSTDPE-ELTQRVREFLKTAG 103 (112)
T ss_dssp TTCCSCEEEEECSCC---HHHHHHHHHHHHHHTCEEEEEECCCHH-HHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEecCcc---cccHHHHHHHHHhcCcchhhhccCCHH-HHHHHHHHHHHhcc
Confidence 336677899986653 556667777788999999988765544 45667777876553
No 103
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=32.94 E-value=48 Score=30.66 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=43.6
Q ss_pred CCCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCCc-----HHHHHHHHHHhcCCCCcEEEEcCC
Q 016164 105 KQQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDEGN-----TEKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 105 ~~~~RIVlFvgSp~~~--d~~~l~~~akkLKknnI~VdiI~fG~e~~~n-----~~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
...++|+++.||+... +..-+..+++.+++.++.|.+|.+.+-...+ .+-++.+++++..-| .+|.+-|
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD--~iI~~sP 107 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE--GQVWVSP 107 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS--EEEEEEE
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC--EEEEEeC
Confidence 3567899999999753 2333445677788889999999987642111 233566666665322 4554444
No 104
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=31.99 E-value=22 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHHhCCceEEE
Q 016164 121 EKKVLEMIGRKLKKNSVALDI 141 (394)
Q Consensus 121 d~~~l~~~akkLKknnI~Vdi 141 (394)
.|.++.++-+..||.||+|..
T Consensus 13 tpeelkklkeeakkanirvtf 33 (36)
T 2ki0_A 13 TPEELKKLKEEAKKANIRVTF 33 (36)
T ss_dssp CHHHHHHHHHHHHHHCCCCCB
T ss_pred CHHHHHHHHHHHHhccEEEEe
Confidence 588999999999999999864
No 105
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=31.52 E-value=45 Score=28.98 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=28.8
Q ss_pred eEEEEEecCCCCC--ChhHHHHHHHH-HHhCCceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKH--EKKVLEMIGRK-LKKNSVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~--d~~~l~~~akk-LKknnI~VdiI~fG~e 147 (394)
++|++|.||+... +..-...+++. +++.++.|.+|.+...
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~ 45 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDL 45 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGS
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 4788999998632 34444455677 7888999999998764
No 106
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=31.35 E-value=92 Score=24.68 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=22.0
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEeC
Q 016164 121 EKKVLEMIGRKLKKNSVALDIVNFG 145 (394)
Q Consensus 121 d~~~l~~~akkLKknnI~VdiI~fG 145 (394)
++.++.++.+.|++.+|.|.+|++|
T Consensus 74 ~~~~~~~ai~~L~~~~v~vEvlg~~ 98 (98)
T 3ced_A 74 SSVDFGKFEKELIERQVKMEVLRHG 98 (98)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 4667889999999999999999876
No 107
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=31.19 E-value=61 Score=28.11 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=36.1
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (394)
+-|.|.|+.-...++.+.++++.+++.++.|.+..=|... ...+.++.|.+.
T Consensus 71 ~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~-~~~~~~~~l~~~ 122 (245)
T 3c8f_A 71 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR-RYDPVIDELLEV 122 (245)
T ss_dssp CEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCC-CCCHHHHHHHHT
T ss_pred CeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcC-cCHHHHHHHHHh
Confidence 3466777655555655789999999999988877767441 134677777764
No 108
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.07 E-value=10 Score=36.15 Aligned_cols=18 Identities=56% Similarity=0.826 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHhccccC
Q 016164 320 AEDDPELALALQLSMQDG 337 (394)
Q Consensus 320 ~~e~~~ia~A~~ms~~~~ 337 (394)
...|++||.||+|||++.
T Consensus 222 p~~dpela~alr~s~eee 239 (268)
T 4b4t_W 222 PSMDPELAMALRLSMEEE 239 (268)
T ss_dssp ------------------
T ss_pred CCCCHHHHHHHHHhHHHH
Confidence 346788999999998754
No 109
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=30.62 E-value=55 Score=28.08 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=29.6
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHh-CCceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKk-nnI~VdiI~fG~e 147 (394)
++|+++.+|+...+..-...+++.+++ .++.|+++.+...
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~ 45 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA 45 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC
Confidence 578888899654455555677888888 8899988887654
No 110
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis}
Probab=29.88 E-value=3.6e+02 Score=25.43 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=13.2
Q ss_pred cceEEEEEeCChhhhCCCCCC
Q 016164 3 LEATLICIDNSEWMRNGDYAP 23 (394)
Q Consensus 3 lEa~vIvIDnSesMrngD~~P 23 (394)
.+.+||+||+.. |..||.|
T Consensus 74 ~~~IvV~i~~~~--R~~dytp 92 (331)
T 3gff_A 74 PKVIIVGIHNTN--RMRDYTP 92 (331)
T ss_dssp CCCEEEEECCSS--HHHHSCS
T ss_pred CCEEEEEECCCC--cccccCC
Confidence 467899999854 5556655
No 111
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=29.78 E-value=3e+02 Score=25.29 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=46.4
Q ss_pred CCCCeEEEEEecCCCCC-ChhHHHHHHHHHHhCC-ceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCCCchh
Q 016164 104 KKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS-VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 180 (394)
Q Consensus 104 k~~~~RIVlFvgSp~~~-d~~~l~~~akkLKknn-I~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g~~lL 180 (394)
.....|+|+++.++... ..+.+..+-+.|++.+ |.|.++-.--..+ .+.+..+.+.+....+.-++.+.-|+.+|
T Consensus 31 ~~~~d~ViLv~~~~~~~~~~~A~~~i~~~l~~~~~i~~e~~~vd~~df--~~~v~~i~~~i~~~~~~iivnlsGG~Ril 107 (244)
T 2wte_A 31 AQKEDSLVIVVPSPIVSGTRAAIESLRAQISRLNYPPPRIYEIEITDF--NLALSKILDIILTLPEPIISDLTMGMRMI 107 (244)
T ss_dssp CCTTSEEEEEEESSCCHHHHHHHHHHHHHHHHHTCCCEEEEEECCCSH--HHHHHHHHHHHTTSCSSEEEECSSSCHHH
T ss_pred CCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHcCCCceEEEEECCccH--HHHHHHHHHHHhhcCCcEEEEecCCchHH
Confidence 44677889988877643 3444444445555444 5777777654332 45556666666654457777788888654
No 112
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=29.22 E-value=54 Score=31.20 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=44.7
Q ss_pred CCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCCCC------cHHHHHHHHHHhcCCCCcEEEEcCC
Q 016164 106 QQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDEG------NTEKLEALLAAVNNNDSSHLVHVPP 175 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~--d~~~l~~~akkLKknnI~VdiI~fG~e~~~------n~~~l~~~~~~vn~~~~S~~v~vp~ 175 (394)
..++|+++.||+... +..-+..+++.+++.++.|.+|.+...... ..+.++.+++++..-| .+|.+-|
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~AD--giV~aSP 132 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSE--GQVWCSP 132 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCS--EEEEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCC--eEEEEcC
Confidence 567999999999853 333444567888888999999999874311 1244666777775323 4555444
No 113
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=28.64 E-value=53 Score=30.18 Aligned_cols=59 Identities=8% Similarity=0.168 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 87 LAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 87 L~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
+..++..+..-++.. ...+++|+||.||-....+.-...+++.| ..++.+.++.+.+-.
T Consensus 22 ~~~av~~~~~l~~~~--~~~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~~ 80 (219)
T 3hr4_A 22 LVKAVLFACMLMRKT--MASRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKYR 80 (219)
T ss_dssp HHHHHHHHHHHHHHH--HHTSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGCC
T ss_pred HHHHHHHHHHHHHHH--HhcCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccCC
Confidence 455666665544332 34677888888998766666667777777 578999999887643
No 114
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=28.08 E-value=52 Score=28.14 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=29.6
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
++|+++.+| ...+..-...+++.+++.++.|.+|.+...
T Consensus 5 mkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 578888899 333455556678888888999999998765
No 115
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}
Probab=26.95 E-value=1.2e+02 Score=29.39 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=40.8
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCC---hhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 83 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE---KKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 83 G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d---~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
|.--+..+.+.|+.+|... ..+..++.+= +=.+... ...+.++++.|+..||+||-|||=..
T Consensus 151 G~~~i~~aF~~Ar~a~~~~--~dP~a~L~~N-DYn~e~~~~k~~~~~~lv~~l~~~gvpidgiG~Q~H 215 (335)
T 4f8x_A 151 GEEYFYLAFKYAQEALAQI--GANDVKLYYN-DYGIENPGTKSTAVLQLVSNLRKRGIRIDGVGLESH 215 (335)
T ss_dssp CTHHHHHHHHHHHHHHHHT--TCTTSEEEEE-ESSCSSSSHHHHHHHHHHHHHHHTTCCCCEEEECCE
T ss_pred CHHHHHHHHHHHHHhcccc--CCCCcEEEEe-cccccCCcHhHHHHHHHHHHHHHCCCCcceeeeeee
Confidence 5566788999999997542 2233333221 2222221 24688999999999999999998544
No 116
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=32.56 E-value=14 Score=29.85 Aligned_cols=48 Identities=27% Similarity=0.478 Sum_probs=31.4
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
.+||+++.|. .-.+..++++.|.++..|+|+---... ..|+.-+.++.
T Consensus 3 skiiviissd----dttleelarkikdeglevyillkdkde----krleekiqklk 50 (110)
T 2lta_A 3 SKIIVIISSD----DTTLEELARKIKDEGLEVYILLKDKDE----KRLEEKIQKLK 50 (110)
Confidence 3566665555 345778999999999999987544332 34555554443
No 117
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=26.43 E-value=1.3e+02 Score=27.31 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChh------------HH----HHHHHHHHhCCceEEEEEeCCCC
Q 016164 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKK------------VL----EMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~------------~l----~~~akkLKknnI~VdiI~fG~e~ 148 (394)
+++...+.+.+.++++.. +....||| +++|.....+. -+ ..+++.+++.||+|.+|.-|.-.
T Consensus 123 vN~~g~~~l~~~~~~~m~-~~~~g~iv-~isS~~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v 200 (285)
T 3sc4_A 123 IQVRGTYAVSQSCIPHMK-GRDNPHIL-TLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTV 200 (285)
T ss_dssp HHHHHHHHHHHHHGGGTT-TSSSCEEE-ECCCCCCCSGGGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCB
T ss_pred HHhHHHHHHHHHHHHHHH-HcCCcEEE-EECChhhccCCCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcc
Confidence 456667778888887753 22345654 55664432111 11 23456677789999999999533
Q ss_pred CCcHHHHHHH
Q 016164 149 EGNTEKLEAL 158 (394)
Q Consensus 149 ~~n~~~l~~~ 158 (394)
+++..+.+
T Consensus 201 --~t~~~~~~ 208 (285)
T 3sc4_A 201 --ATAAVQNL 208 (285)
T ss_dssp --CCHHHHHH
T ss_pred --ccHHHHhh
Confidence 23455444
No 118
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=26.38 E-value=93 Score=29.10 Aligned_cols=57 Identities=4% Similarity=0.026 Sum_probs=38.3
Q ss_pred CeEEEEEecCCCCC-ChhHHHHHHHHHHhC--CceEEEEEeCCCCCCc--HHHHHHHHHHhc
Q 016164 107 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN--SVALDIVNFGEDDEGN--TEKLEALLAAVN 163 (394)
Q Consensus 107 ~~RIVlFvgSp~~~-d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n--~~~l~~~~~~vn 163 (394)
...+|+|+|..... ....+.++.+++++. ++.+.|||-|...... .+.++++++..+
T Consensus 183 ~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~ 244 (413)
T 3oy2_A 183 DDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASG 244 (413)
T ss_dssp TSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHT
T ss_pred CceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcC
Confidence 45678888885443 556677777776553 6899999988754111 267788877764
No 119
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=25.84 E-value=95 Score=31.89 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 90 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 90 gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
|..+|...+++.+ ....+||+||.|. .+ +.+|=+-+|+.|+..+.+|.|+-++..
T Consensus 36 g~a~a~~i~~~~~-~~~~~~v~VlcG~-GN-NGGDGlv~AR~L~~~G~~V~v~~~~~~ 90 (502)
T 3rss_A 36 GISVVLAMEEELG-NLSDYRFLVLCGG-GN-NGGDGFVVARNLLGVVKDVLVVFLGKK 90 (502)
T ss_dssp HHHHHHHHHHHHS-CCTTCEEEEEECS-SH-HHHHHHHHHHHHTTTSSEEEEEECCSS
T ss_pred HHHHHHHHHHhcC-ccCCCEEEEEECC-CC-CHHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 4555655555543 2245677777554 33 477888999999999999999999876
No 120
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=25.40 E-value=79 Score=25.84 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=27.5
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
+|+|+.+|....++.-...+++.|...++.|.++.
T Consensus 3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 46666788877777777888999998888888764
No 121
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=25.34 E-value=3.6e+02 Score=26.73 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=43.3
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCCh--------------h--------HHHHHHHHHHhCCceEE
Q 016164 83 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEK--------------K--------VLEMIGRKLKKNSVALD 140 (394)
Q Consensus 83 G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~--------------~--------~l~~~akkLKknnI~Vd 140 (394)
|..++..-+.++..|-++ .-+.+|-|-.|+.=.|| . ....++++||++++.|+
T Consensus 84 g~~d~~~~~~~a~~Ak~~-----GLkVlldfHysD~WadPg~Q~~P~aW~~~~~~~l~~~~~~yt~~~l~~l~~~g~~~~ 158 (399)
T 1ur4_A 84 GNNDLEKAIQIGKRATAN-----GMKLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIG 158 (399)
T ss_dssp TCCCHHHHHHHHHHHHHT-----TCEEEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHHHHC-----CCEEEEEeccCCccCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 557888888888888544 33455556566442233 1 22356789999999999
Q ss_pred EEEeCCCCCCc
Q 016164 141 IVNFGEDDEGN 151 (394)
Q Consensus 141 iI~fG~e~~~n 151 (394)
.|..|.|. .+
T Consensus 159 ~vqvGNEi-~~ 168 (399)
T 1ur4_A 159 MVQVGNET-NG 168 (399)
T ss_dssp EEEESSSC-SS
T ss_pred EEEEcccc-cc
Confidence 99999987 44
No 122
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=25.34 E-value=2.3e+02 Score=22.96 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=38.9
Q ss_pred eEEEEEecCCCCCC------hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhcCCCCcEEEEcCCC
Q 016164 108 QRIIVFVGSPIKHE------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 176 (394)
Q Consensus 108 ~RIVlFvgSp~~~d------~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~~~S~~v~vp~g 176 (394)
+|| +|+|..++.. ..-...+.+.|++.+..+.++++|-....-...+..|-..+.. ....+|+|--|
T Consensus 3 ~~i-~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~-~~pd~vvi~~G 75 (185)
T 3hp4_A 3 NTI-LILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQ-YEPTHVLIELG 75 (185)
T ss_dssp EEE-EEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHH-HCCSEEEEECC
T ss_pred CeE-EEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhh-cCCCEEEEEee
Confidence 454 4556555532 2345677888998899999998888762223455555443321 12235555554
No 123
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=24.76 E-value=42 Score=27.05 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=29.7
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
|+|+.+|....+..-...+++.|++.++.|+++.+.+..
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~ 39 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN 39 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC
Confidence 355567775556666678889999999999999887654
No 124
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=24.34 E-value=65 Score=27.33 Aligned_cols=40 Identities=5% Similarity=0.238 Sum_probs=28.8
Q ss_pred eEEEEEecCCCC--C-ChhHHHHHHHHHHhCC--ceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIK--H-EKKVLEMIGRKLKKNS--VALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~--~-d~~~l~~~akkLKknn--I~VdiI~fG~e 147 (394)
++|+++.+||.. . +..-...+++.+++.+ +.|.+|.+...
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTS
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 478888999983 3 3333445677788765 89999998764
No 125
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=24.05 E-value=47 Score=29.40 Aligned_cols=41 Identities=10% Similarity=0.188 Sum_probs=32.6
Q ss_pred CCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 106 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
..++|+|+.+|.....++-...+++.|+..++.|+++.+..
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~ 60 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDS 60 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGG
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHH
Confidence 45678888888877677777888999998899999988765
No 126
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=23.86 E-value=65 Score=29.43 Aligned_cols=36 Identities=14% Similarity=-0.100 Sum_probs=25.9
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
.+||++-+.+.+. --+....+++.|++.|+.|.+|-
T Consensus 5 ~k~IllgiTGsia-ayk~~~~ll~~L~~~g~eV~vv~ 40 (207)
T 3mcu_A 5 GKRIGFGFTGSHC-TYEEVMPHLEKLIAEGAEVRPVV 40 (207)
T ss_dssp TCEEEEEECSCGG-GGTTSHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEEChHH-HHHHHHHHHHHHHhCCCEEEEEE
Confidence 4678777755442 23336788999999999999874
No 127
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=23.86 E-value=74 Score=25.14 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=26.9
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
|+|+.+|....+..-...+++.+++.++.|+++.+.+.
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~ 39 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDT 39 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSC
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccC
Confidence 45556777544555566778888888999998887653
No 128
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=23.54 E-value=1.1e+02 Score=31.18 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=40.3
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
....+|+|||..... ....+.++.++|++.++.+-++|-|... ....++.+....
T Consensus 325 ~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~--~~~~~~~~~~~~ 380 (536)
T 3vue_A 325 RKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKK--FEKLLKSMEEKY 380 (536)
T ss_dssp TTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHH--HHHHHHHHHHHS
T ss_pred CCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCch--HHHHHHHHHhhc
Confidence 455689999887654 5667889999999999999999988754 234555555443
No 129
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=23.21 E-value=1.8e+02 Score=24.04 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=34.0
Q ss_pred eEEEEEecCCCC--C--ChhHHHHHHHHHHhCCc----eEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 108 QRIIVFVGSPIK--H--EKKVLEMIGRKLKKNSV----ALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 108 ~RIVlFvgSp~~--~--d~~~l~~~akkLKknnI----~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
+.+||+..++-. | .-..+.++.+++++.++ +|.+|++.... .+.+.+++|++.-+
T Consensus 60 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~-~~~~~~~~~~~~~~ 122 (183)
T 3lwa_A 60 QVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD-YSRDIAQDFVTDNG 122 (183)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSC-CCHHHHHHHHHHTT
T ss_pred CEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCC-CCHHHHHHHHHHcC
Confidence 344444444432 2 23467788889988888 44556655544 36789999998764
No 130
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27
Probab=22.46 E-value=3.1e+02 Score=22.23 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=26.4
Q ss_pred HHhC-CceEEEEEeCCCCCCcHHHHHHHHHHhc-CCC--CcEEEEcCCCCc
Q 016164 132 LKKN-SVALDIVNFGEDDEGNTEKLEALLAAVN-NND--SSHLVHVPPGPN 178 (394)
Q Consensus 132 LKkn-nI~VdiI~fG~e~~~n~~~l~~~~~~vn-~~~--~S~~v~vp~g~~ 178 (394)
+++- ++++-+|.=........+..+.+.+.+. ..+ +..+++++...|
T Consensus 167 ~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 217 (238)
T 1ufo_A 167 GEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGH 217 (238)
T ss_dssp GGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCS
T ss_pred hhhccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCc
Confidence 3444 6777666433332223456677777775 333 567777776444
No 131
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=22.40 E-value=2.2e+02 Score=27.67 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=56.8
Q ss_pred CCCCHHHHHHH-------hcCccccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCc
Q 016164 65 PTSDLGKILAC-------MHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV 137 (394)
Q Consensus 65 lT~D~~kilsa-------L~~l~~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI 137 (394)
..+|+..++.. ++-+-+.-.+.+- .+++..+|++ +| =||+-=|+..+..+..++++.++++|+
T Consensus 93 ~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H--~~~~~~al~a--Gk------hVl~EKPla~~~~ea~~l~~~a~~~g~ 162 (417)
T 3v5n_A 93 VYSDFKEMAIREAKLKNGIEAVAIVTPNHVH--YAAAKEFLKR--GI------HVICDKPLTSTLADAKKLKKAADESDA 162 (417)
T ss_dssp BCSCHHHHHHHHHHCTTCCSEEEECSCTTSH--HHHHHHHHTT--TC------EEEEESSSCSSHHHHHHHHHHHHHCSS
T ss_pred ccCCHHHHHhcccccCCCCcEEEECCCcHHH--HHHHHHHHhC--CC------eEEEECCCcCCHHHHHHHHHHHHHcCC
Confidence 34677777765 5554443333322 4667777776 33 266788988899999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHH
Q 016164 138 ALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 138 ~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
.+ .|+|--.-......++++++
T Consensus 163 ~~-~v~~~~R~~p~~~~~k~~i~ 184 (417)
T 3v5n_A 163 LF-VLTHNYTGYPMVRQAREMIE 184 (417)
T ss_dssp CE-EEECGGGGSHHHHHHHHHHH
T ss_pred EE-EEEecccCCHHHHHHHHHHh
Confidence 77 67776654333456666664
No 132
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=22.14 E-value=92 Score=26.31 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=31.9
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016164 110 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 161 (394)
Q Consensus 110 IVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (394)
-|.|.|+.-...++-+.++++.+|+.++.+.+..=|.- +.+.++.|.+.
T Consensus 6 ~v~~tGGEPll~~~~~~~l~~~~~~~g~~~~l~TNG~l---~~~~~~~l~~~ 54 (182)
T 3can_A 6 GVTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLA---RKETVDEVMRN 54 (182)
T ss_dssp CEEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCC---CHHHHHHHHHT
T ss_pred EEEEEcccccCCHHHHHHHHHHHHHCCCcEEEECCCCC---CHHHHHHHHhh
Confidence 36677766555554446888888888887777766652 24566666643
No 133
>3fzy_A RTX toxin RTXA; RTXA toxin, CPD, cysteine protease domain, PRE-cleavage form IDP00167, structural genomics; HET: IHP; 1.95A {Vibrio cholerae} PDB: 3eeb_A* 3gcd_A*
Probab=22.07 E-value=2.3e+02 Score=26.57 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=36.3
Q ss_pred CCCCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCCCC
Q 016164 104 KKQQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 104 k~~~~RIVlFvgSp~~~--d~~~l~~~akkLKknnI~VdiI~fG~e~ 148 (394)
...+++|+|.-|+.... .+.-..+.++.|.+++|+.+|-+.-.++
T Consensus 154 ~~~P~~IsLvGCsL~~~~~~~~Fa~~f~~aL~~~Gi~~~VsAr~~~V 200 (234)
T 3fzy_A 154 NNKPDHISIVGSSLVSDDKQKGFGHQFINAMDANGLRVDVSVRSSEL 200 (234)
T ss_dssp CCCCSEEEEESSSCSCTTSSSSHHHHHHHHHHHTTCCCEEEEESSCE
T ss_pred CCCCCEEEEEEecCcCCCccccHHHHHHHHHHhCCCceeEEEEEeeE
Confidence 45677888877777764 3446778999999999999999998888
No 134
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=21.80 E-value=88 Score=27.32 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=29.6
Q ss_pred eEEEEEecCCCCC---ChhHHHHHHHHHHhC--CceEEEEEeCCC
Q 016164 108 QRIIVFVGSPIKH---EKKVLEMIGRKLKKN--SVALDIVNFGED 147 (394)
Q Consensus 108 ~RIVlFvgSp~~~---d~~~l~~~akkLKkn--nI~VdiI~fG~e 147 (394)
++|+++.|||... +..-...+++.+++. +..|.+|-+.+.
T Consensus 2 mkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~ 46 (212)
T 3r6w_A 2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRV 46 (212)
T ss_dssp CCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSS
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 3688888999863 233344668888887 899999998765
No 135
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=21.75 E-value=1.5e+02 Score=26.79 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=32.9
Q ss_pred ccccCcccHHHH--HHHHHHHhhhcCCCCCCeEEEEEecCCCCC--ChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 79 LEIGGELNLAAG--IQVAQLALKHRQNKKQQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 79 l~~~G~~sL~~g--L~iA~lALkhr~~k~~~~RIVlFvgSp~~~--d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+.++|.+.-..+ |.-.++.|... .. +-|+|++.||.-. ....|..+++.+ +..|.++..|-
T Consensus 42 I~l~G~I~~~~a~~i~~~L~~l~~~---~~-k~I~l~INSPGGsv~a~~~I~~~i~~~---~~pV~t~v~g~ 106 (215)
T 2f6i_A 42 IYLTDEINKKTADELISQLLYLDNI---NH-NDIKIYINSPGGSINEGLAILDIFNYI---KSDIQTISFGL 106 (215)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHHH---CC-SCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEE
T ss_pred EEEccEECHHHHHHHHHHHHHHHhC---CC-CcEEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEeeE
Confidence 356676554333 33333334332 23 8899999999865 233445555544 44555555543
No 136
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.67 E-value=4.1e+02 Score=23.43 Aligned_cols=119 Identities=12% Similarity=0.148 Sum_probs=67.9
Q ss_pred EEEEeCChhhhCCC-CCCcHHHHHHHHHHHHHHHhccCCcCCeEEEEEecCCccEEEECCCCCHHH---HHHHhcC--cc
Q 016164 7 LICIDNSEWMRNGD-YAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGK---ILACMHG--LE 80 (394)
Q Consensus 7 vIvIDnSesMrngD-~~PsRl~Aq~~Av~~fv~~k~~~NPes~VGLVtmag~~a~vLvtlT~D~~k---ilsaL~~--l~ 80 (394)
+|++|....-..-+ +..+-..+...+++.+++. -..+||+|+-... . ....+ +..+|.. +.
T Consensus 91 vV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~-----G~~~I~~i~~~~~-------~-~~~~R~~Gf~~al~~~g~~ 157 (289)
T 3k9c_A 91 ALVVARASGLPGVGAVRGDDVAGITLAVDHLTEL-----GHRNIAHIDGADA-------P-GGADRRAGFLAAMDRHGLS 157 (289)
T ss_dssp EEEESSCCSSTTSEEEEECHHHHHHHHHHHHHHT-----TCCSEEEECCTTS-------T-THHHHHHHHHHHHHHTTCG
T ss_pred EEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHC-----CCCcEEEEeCCCC-------c-cHHHHHHHHHHHHHHCCCC
Confidence 56666543211122 2356788888999988884 2236777653221 1 11222 2333432 21
Q ss_pred -----ccCcccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCce----EEEEEeCCCC
Q 016164 81 -----IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVA----LDIVNFGEDD 148 (394)
Q Consensus 81 -----~~G~~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~----VdiI~fG~e~ 148 (394)
..+..+...+.+.+...|+..+ ... .||.. +......+.+.|++.|++ |.||||....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~--ai~~~-----~d~~A~g~~~al~~~g~~vP~di~vig~D~~~ 224 (289)
T 3k9c_A 158 ASATVVTGGTTETEGAEGMHTLLEMPT---PPT--AVVAF-----NDRCATGVLDLLVRSGRDVPADISVVGYDDSR 224 (289)
T ss_dssp GGEEEECCCSSHHHHHHHHHHHHTSSS---CCS--EEEES-----SHHHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred CCccEEECCCCHHHHHHHHHHHHcCCC---CCC--EEEEC-----ChHHHHHHHHHHHHcCCCCCCceEEEEECCHH
Confidence 2466777888888888886421 122 23322 234455778889999987 7899998643
No 137
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=21.53 E-value=86 Score=27.75 Aligned_cols=34 Identities=6% Similarity=0.176 Sum_probs=25.6
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 108 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 108 ~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
+||++.+.+.+.. - ....+++.|++.++.|++|-
T Consensus 6 k~IllgvTGs~aa-~-k~~~ll~~L~~~g~~V~vv~ 39 (175)
T 3qjg_A 6 ENVLICLCGSVNS-I-NISHYIIELKSKFDEVNVIA 39 (175)
T ss_dssp CEEEEEECSSGGG-G-GHHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEEEeCHHHH-H-HHHHHHHHHHHCCCEEEEEE
Confidence 6787777555543 2 36789999999999999874
No 138
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.53 E-value=1.4e+02 Score=25.38 Aligned_cols=24 Identities=0% Similarity=0.163 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhC-CceEEEEEeCC
Q 016164 123 KVLEMIGRKLKKN-SVALDIVNFGE 146 (394)
Q Consensus 123 ~~l~~~akkLKkn-nI~VdiI~fG~ 146 (394)
+|...++++|++. |++|.++|+-.
T Consensus 119 ~DF~plv~~lr~~~G~~V~v~g~~~ 143 (165)
T 2qip_A 119 GDFSLLVERIQQRYNKKVTVYGVPR 143 (165)
T ss_dssp GGGHHHHHHHHHHHCCEEEEEECGG
T ss_pred hhHHHHHHHHHHHcCcEEEEEeCCC
Confidence 3678899999995 99998888743
No 139
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=21.38 E-value=1.4e+02 Score=26.81 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=35.7
Q ss_pred ccccCcccHHHHHHHH--HHHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 79 LEIGGELNLAAGIQVA--QLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 79 l~~~G~~sL~~gL~iA--~lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+.++|.++-..+=.+. ++.|.. ....+.|++++.||... ...-..+...++..+..|.+++.|-
T Consensus 33 I~l~g~I~~~~a~~i~~~L~~l~~---~~~~~~I~l~INSpGG~-v~~~~~I~~~i~~~~~~v~t~~~G~ 98 (201)
T 3p2l_A 33 VFLNGEVNDHSANLVIAQLLFLES---EDPDKDIYFYINSPGGM-VTAGMGVYDTMQFIKPDVSTICIGL 98 (201)
T ss_dssp EEEESCBCHHHHHHHHHHHHHHHH---HCSSSCEEEEEEECCBC-HHHHHHHHHHHHHSSSCEEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHh---cCCCCCEEEEEECCCCC-HHHHHHHHHHHHHhCCCeEEEEcCE
Confidence 4667876655444443 333433 23567899999999865 2223334444444445555555554
No 140
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=21.36 E-value=1.1e+02 Score=28.73 Aligned_cols=42 Identities=5% Similarity=0.041 Sum_probs=31.9
Q ss_pred CCeEEEEEecCCCCC-ChhHHHHHHHHHHhCCceEEEEEeCCC
Q 016164 106 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGED 147 (394)
Q Consensus 106 ~~~RIVlFvgSp~~~-d~~~l~~~akkLKknnI~VdiI~fG~e 147 (394)
.++||++++.++... .+.-+..+++.|++.|..|.++.+...
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 81 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGP 81 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 568888877765332 345667899999999999999988754
No 141
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=21.23 E-value=73 Score=29.57 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCC--Ch---------hHH----HHHHHHHHhCCceEEEEEeCCCC
Q 016164 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--EK---------KVL----EMIGRKLKKNSVALDIVNFGEDD 148 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~--d~---------~~l----~~~akkLKknnI~VdiI~fG~e~ 148 (394)
.+|...+.+++.+++|...++..-+|| +++|-... .+ .-+ ..+++.+.+.||||..|+=|--.
T Consensus 116 vNl~g~~~~~~~~~p~m~~~~~~G~IV-nisS~~~~~~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~ 193 (255)
T 4g81_D 116 TNLTSAFLVSRSAAKRMIARNSGGKII-NIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYIL 193 (255)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTCCEEEE-EECCGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC
T ss_pred HHhHHHHHHHHHHHHHHHHccCCCEEE-EEeehhhcCCCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCC
Confidence 456667777888887753233455655 45554421 11 122 35678888999999999999743
No 142
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=20.96 E-value=1.8e+02 Score=26.12 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCCCCChh-----------------HHHHHHHHHHhCCceEEEEEeCC
Q 016164 85 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKK-----------------VLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 85 ~sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~~~d~~-----------------~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+++...+.+.+.++++.. +....|| |+++|.....+. -...+++.+++.||+|.+|.-|.
T Consensus 120 vN~~g~~~l~~~~~~~m~-~~~~g~i-v~isS~~~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~ 196 (274)
T 3e03_A 120 VNARGSFVCAQACLPHLL-QAPNPHI-LTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRT 196 (274)
T ss_dssp HTHHHHHHHHHHHHHHHT-TSSSCEE-EECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSB
T ss_pred HhhHhHHHHHHHHHHHHH-hcCCceE-EEECChHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCc
Confidence 566667777777777653 2234564 456665543331 11345677788899999999994
No 143
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=20.90 E-value=1.1e+02 Score=27.88 Aligned_cols=35 Identities=9% Similarity=-0.012 Sum_probs=26.2
Q ss_pred CeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEE
Q 016164 107 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 143 (394)
Q Consensus 107 ~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~ 143 (394)
.+||||-+.+.+.. --...+++.|++.++.|.+|-
T Consensus 4 ~k~IllgvTGaiaa--~k~~~ll~~L~~~g~eV~vv~ 38 (209)
T 3zqu_A 4 PERITLAMTGASGA--QYGLRLLDCLVQEEREVHFLI 38 (209)
T ss_dssp CSEEEEEECSSSCH--HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEECHHHH--HHHHHHHHHHHHCCCEEEEEE
Confidence 46888777665543 336788999999999999874
No 144
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=20.88 E-value=3.1e+02 Score=26.39 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHhc
Q 016164 125 LEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 163 (394)
Q Consensus 125 l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (394)
+.++.+.|++.++.+.++.=++.. .+.+.+++.++...
T Consensus 58 ~~~v~~~L~~~g~~~~~~~~~~~~-p~~~~v~~~~~~~~ 95 (371)
T 1o2d_A 58 LDDLKKLLDETEISYEIFDEVEEN-PSFDNVMKAVERYR 95 (371)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSS-CBHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEeCCccCC-CCHHHHHHHHHHHH
Confidence 344444555555544333322333 34445555555444
No 145
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=20.66 E-value=1.6e+02 Score=26.47 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=35.6
Q ss_pred ccccCcccHHHHHHHHH--HHhhhcCCCCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEeCC
Q 016164 79 LEIGGELNLAAGIQVAQ--LALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 146 (394)
Q Consensus 79 l~~~G~~sL~~gL~iA~--lALkhr~~k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~fG~ 146 (394)
+.++|.++-..+=.+.. +.|.. ....+.|+|++.||... ...-..+...++..+..|.++..|-
T Consensus 30 I~l~g~I~~~~a~~i~~~L~~l~~---~~~~~~I~l~InSPGG~-v~~~~~I~~~i~~~~~~V~t~~~G~ 95 (203)
T 3qwd_A 30 IMLGSQIDDNVANSIVSQLLFLQA---QDSEKDIYLYINSPGGS-VTAGFAIYDTIQHIKPDVQTICIGM 95 (203)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHH---HCSSSCEEEEEEECCBC-HHHHHHHHHHHHHSSSCEEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHh---cCCCCCEEEEEeCCCCC-HHHHHHHHHHHHHhcCCcEEEEeee
Confidence 46778766555444443 33333 23567899999999865 2233334444444445555555443
No 146
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=20.64 E-value=1.6e+02 Score=22.84 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCeEEEEEecCCC-CC--ChhHHHHHHHHHHhCCceEEEEEe
Q 016164 86 NLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPI-KH--EKKVLEMIGRKLKKNSVALDIVNF 144 (394)
Q Consensus 86 sL~~gL~iA~lALkhr~~k~~~~RIVlFvgSp~-~~--d~~~l~~~akkLKknnI~VdiI~f 144 (394)
.+.++|..|...++.. + ...|.||+-++. .. ....+.+.++.|++.||++.+-+-
T Consensus 12 ~~~~al~~~~n~~~~~--~--~~~v~vv~~g~gv~~~~~~~~~~~~i~~l~~~gV~~~~C~~ 69 (108)
T 2pd2_A 12 KVPQALRSVINLYNDI--K--DAEIEVVLHQSAIKALLKDSDTRSIIEDLIKKNILIVGCEN 69 (108)
T ss_dssp GHHHHHHHHHHHHHHS--T--TCEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTCEEEEEHH
T ss_pred HHHHHHHHHHHHHhhC--C--CCeEEEEEcChHHHHHHcCchHHHHHHHHHHCcCEEEecHH
Confidence 4567888888888762 2 345555554443 21 233677888889899998776443
No 147
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=20.50 E-value=2.6e+02 Score=22.52 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016164 122 KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 160 (394)
Q Consensus 122 ~~~l~~~akkLKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (394)
-....++++.|+++||.|.+|.+..-.--..+.+..+++
T Consensus 25 ~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~ 63 (118)
T 3ju3_A 25 KGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLS 63 (118)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHc
Confidence 466788899999999999999999864334455666654
No 148
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=20.48 E-value=1.2e+02 Score=25.81 Aligned_cols=39 Identities=10% Similarity=0.336 Sum_probs=27.3
Q ss_pred eEEEEEecCCCCC--ChhHHHHHHHHHHhC------CceEEEEEeCC
Q 016164 108 QRIIVFVGSPIKH--EKKVLEMIGRKLKKN------SVALDIVNFGE 146 (394)
Q Consensus 108 ~RIVlFvgSp~~~--d~~~l~~~akkLKkn------nI~VdiI~fG~ 146 (394)
++|+++.||+... +..-...+++.+++. ++.|.+|.+.+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~ 47 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQ 47 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhh
Confidence 4788899999842 333344556677765 68999998764
No 149
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=20.46 E-value=1.7e+02 Score=27.28 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=29.3
Q ss_pred CCCCeEEEEEecCCCCCChhHHHHHHHHHHhCCceEEEEEe
Q 016164 104 KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 144 (394)
Q Consensus 104 k~~~~RIVlFvgSp~~~d~~~l~~~akkLKknnI~VdiI~f 144 (394)
+-+|--++++-||.. .+.+.+..+++|+++|+|-.+++
T Consensus 142 ~lpr~~~lvlags~m---gg~i~~~v~~~~~~~i~vi~l~m 179 (223)
T 1y7p_A 142 RLHRAEVLVLAGGIM---GGKITEEVKKLRKSGIRVISLSM 179 (223)
T ss_dssp GSTTEEEEEEESSBC---CTHHHHHHHHHGGGTCEEEEESC
T ss_pred hccccceeeEecccc---cchHHHHHHHHHHCCCeEEEecC
Confidence 347788888888875 67889999999999887655544
No 150
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=20.41 E-value=2e+02 Score=27.31 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=29.8
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHh
Q 016164 109 RIIVFVGSPIKHEKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAV 162 (394)
Q Consensus 109 RIVlFvgSp~~~d~~~l~~~akkLKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (394)
.++++.+. ..-+...+.++.+++++. ++.+-|||-|.+ ..+.|+++++..
T Consensus 197 ~vi~~~~~-~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~---~~~~l~~~~~~~ 248 (374)
T 2xci_A 197 EFIVAGSI-HTGEVEIILKAFKEIKKTYSSLKLILVPRHIE---NAKIFEKKARDF 248 (374)
T ss_dssp CEEEEEEE-CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGG---GHHHHHHHHHHT
T ss_pred CEEEEEeC-CCchHHHHHHHHHHHHhhCCCcEEEEECCCHH---HHHHHHHHHHHC
Confidence 34554443 222455677777888764 677888875543 234677777654
Done!