BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016165
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 311 bits (796), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 143/231 (61%), Positives = 176/231 (76%)
Query: 164 LKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYP 223
LK LY KL PLE YRF F SP L ++DFD KPMV++ GQYSTGKT+FI++LL P
Sbjct: 32 LKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91
Query: 224 GAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHS 283
G+ +GPEPTTD FV VM G + ++PGN + V + PF L FG FL++F C+Q+P+
Sbjct: 92 GSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQ 151
Query: 284 LLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVI 343
+LE I+++DTPG+LSG KQR R YDF V WFA + DLI+LLFD HKL+ISDEF I
Sbjct: 152 VLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAI 211
Query: 344 TSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIG 394
+LRGH+DKIRVVLNKAD V+TQQLMRVYGALMW+LGKV+ TPEV+RVYIG
Sbjct: 212 GALRGHEDKIRVVLNKADMVETQQLMRVYGALMWALGKVVGTPEVLRVYIG 262
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGY 70
+KD K ++N A +DG +++G+ A + + L L ++W ++D R G L
Sbjct: 453 VTKDKSKYDEIFYNLAPADG--KLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDD 510
Query: 71 REFIAAMQLISLVQDGHQVTHDL 93
EF A LI +GH + +L
Sbjct: 511 EEFALASHLIEAKLEGHGLPTNL 533
>pdb|2KHN|A Chain A, Nmr Solution Structure Of The Eh 1 Domain From Human
Intersectin-1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 32 GRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQVTH 91
G ITG+ A FF S L + L Q+WA+AD G + EF AM+LI L G+Q+
Sbjct: 47 GFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQLPS 106
Query: 92 DL 93
L
Sbjct: 107 AL 108
>pdb|1QJT|A Chain A, Solution Structure Of The Apo Eh1 Domain Of Mouse
Epidermal Growth Factor Receptor Substrate 15, Eps15
Length = 99
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 18 IYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAM 77
+Y +++ ++ GR+ DA F S L L ++W +AD +G L +EF A+
Sbjct: 12 VYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVAL 71
Query: 78 QLISLVQDGHQV 89
+L++ Q+G +V
Sbjct: 72 RLVACAQNGLEV 83
>pdb|2JQ6|A Chain A, Structure Of Eh-Domain Of Ehd1
Length = 139
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 19 YLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
Y E F Y S +G+ITG +A K S L L ++W +AD + G L EF A
Sbjct: 53 YDEIF-YTLSPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANH 111
Query: 79 LISLVQDGHQVTHDL 93
LI + +GH++ DL
Sbjct: 112 LIKVKLEGHELPADL 126
>pdb|2KFF|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestnpftak
pdb|2KFG|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 In Complex
With Fnyestdpftak
pdb|2KFH|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestgpftak
pdb|2KSP|A Chain A, Mechanism For The Selective Interaction Of C-Terminal
Eh-Dom Proteins With Specific Npf-Containing Partners
Length = 105
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 6 GPIGS------CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAI 59
GP+GS KD + Y E F Y S +G+ITG +A K S L L ++W +
Sbjct: 1 GPLGSDDVEWVVGKD-KPTYDEIF-YTLSPVNGKITGANAKKEMVKSKLPNTVLGKIWKL 58
Query: 60 ADAKRQGYLGYREFIAAMQLISLVQDGHQVTHDL 93
AD + G L EF A LI + +GH++ DL
Sbjct: 59 ADVDKDGLLDDEEFALANHLIKVKLEGHELPADL 92
>pdb|2KGR|A Chain A, Solution Structure Of Protein Itsn1 From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr5524a
Length = 111
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 19 YLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
Y + FN D G +TG A S+L + L +W ++D + G L EFI AM
Sbjct: 16 YRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMH 75
Query: 79 LISLVQDGH 87
LI + G
Sbjct: 76 LIDVAMSGQ 84
>pdb|1FI6|A Chain A, Solution Structure Of The Reps1 Eh Domain
Length = 92
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREF 73
+ ++ Y+ F D +G I G+ A +FF S L +L +W ++D + G L EF
Sbjct: 6 EQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEF 65
Query: 74 IAAMQLISLVQDGHQVTHDL 93
AA L+ ++G+ + L
Sbjct: 66 CAAFHLVVARKNGYDLPEKL 85
>pdb|3FIA|A Chain A, Crystal Structure Of The Eh 1 Domain From Human
Intersectin- 1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 32 GRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQVTH 91
G ITG+ A FF S L + L Q+WA+AD G EF A +LI L G+Q+
Sbjct: 47 GFITGDQARNFFFQSGLPQPVLAQIWALADXNNDGRXDQVEFSIAXKLIKLKLQGYQLPS 106
Query: 92 DL 93
L
Sbjct: 107 AL 108
>pdb|1IQ3|A Chain A, Solution Structure Of The Eps15 Homology Domain Of A
Human Pob1
Length = 110
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYR 71
+++ ++ Y+ F D I+G+ A FF S LS +L +W ++DA G L
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLP 76
Query: 72 EFIAAMQLISLVQDGHQVTHDL 93
EF AA LI ++G+ + L
Sbjct: 77 EFCAAFHLIVARKNGYPLPEGL 98
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 20 LEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79
L F DSDG G+IT + + F ++ + + QV D G + + EF+ MQ
Sbjct: 400 LAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 459
Query: 80 ISLVQDGH 87
I V+ H
Sbjct: 460 ICDVKVKH 467
>pdb|1C07|A Chain A, Structure Of The Third Eps15 Homology Domain Of Human
Eps15
Length = 95
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 19 YLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
Y E F D D DG ++G + + F + L L +W++ D K G L +F A
Sbjct: 12 YDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFH 71
Query: 79 LIS 81
LIS
Sbjct: 72 LIS 74
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 20 LEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79
L F DSDG G+IT + + F ++ + + QV D G + + EF+ MQ
Sbjct: 126 LAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 185
Query: 80 ISLVQ 84
I V+
Sbjct: 186 ICDVK 190
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81
FN D+D G+IT + F L+++S + V AD + + + EF++ M I
Sbjct: 441 FNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKIC 499
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1
With Calcium Bound
Length = 198
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 32 GRITGNDATKFFALSNLS---RQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80
G++T + +FF L NLS + ++Q++ D + GY+ + E++AA+ L+
Sbjct: 30 GQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLV 81
>pdb|2I18|A Chain A, The Refined Structure Of C-Terminal Domain Of An Ef-Hand
Calcium Binding Protein From Entamoeba Histolytica
Length = 64
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 23 FNYADSDGDGRITGNDATKFF---ALSNLSRQDLKQVWAIADAKRQGYLGYREFI 74
+ D DGDG++T + T FF + ++ Q +K ADA GY+ EF+
Sbjct: 11 YKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMK-----ADANGDGYITLEEFL 60
>pdb|2OCP|A Chain A, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|B Chain B, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|C Chain C, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|D Chain D, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|E Chain E, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|F Chain F, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|G Chain G, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|H Chain H, Crystal Structure Of Human Deoxyguanosine Kinase
Length = 241
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 204 GQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP---GNTVAVQADMP 260
G + GK+TF+K LL +YP H+ EP + +G GN + + P
Sbjct: 9 GNIAVGKSTFVK-LLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREP 67
Query: 261 FSGLTTFGT-AFLS--KFECSQMPHSLLE 286
TF T +FLS K + P LL+
Sbjct: 68 ARWSYTFQTFSFLSRLKVQLEPFPEKLLQ 96
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 23 FNYADSDGDGRITGNDATKFF--ALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
F D DG G+I+ + K F A S++ ++L+ + D + G + + EF+ +Q
Sbjct: 423 FKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQ 480
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
F D DG+G+I+ ++ F L +L + K++ + D+ G + + EF +Q
Sbjct: 432 FQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQ 487
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 27 DSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIA 75
D+DGDG++T + T FF + + Q+ ADA GY+ EF+A
Sbjct: 85 DADGDGKLTKEEVTTFFKKFGYEKV-VDQIMK-ADANGDGYITLEEFLA 131
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 23 FNYADSDGDGRITGNDATKFF---ALSNLSRQDLKQVWAIADAKRQGYLGYREFI 74
+ D DGDG++T + T FF + ++ Q +K ADA GY+ EF+
Sbjct: 81 YKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMK-----ADANGDGYITLEEFL 130
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 23 FNYADSDGDGRITGNDATKFF---ALSNLSRQDLKQVWAIADAKRQGYLGYREFI 74
+ D DGDG++T + T FF + ++ Q +K ADA GY+ EF+
Sbjct: 81 YKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMK-----ADANGDGYITLEEFL 130
>pdb|1OQP|A Chain A, Structure Of The Ca2+C-Terminal Domain Of Caltractin In
Complex With The Cdc31p-Binding Domain From Kar1p
Length = 77
Score = 31.6 bits (70), Expect = 0.84, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFAL--SNLSRQDLKQVWAIADAKRQG 66
GS +D ++ L+ F D D G IT D + NL+ ++L+++ A AD
Sbjct: 1 GSGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDN 60
Query: 67 YLGYREFIAAMQLISL 82
+ EFI M+ SL
Sbjct: 61 EIDEDEFIRIMKKTSL 76
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
F D DG+G+I+ ++ F L +L + K++ + D+ G + + EF +Q
Sbjct: 149 FQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQ 204
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 21 EWFNYADSDGDGRITGNDATKFFAL--SNLSRQDLKQVWAIADAKRQGYLGYREFIAA-M 77
E FN D+D G+IT + +NL ++ + AD G + Y+EFIAA +
Sbjct: 31 EXFNXIDADKSGQITFEELKAGLKRVGANLKESEILDLXQAADVDNSGTIDYKEFIAATL 90
Query: 78 QLISLVQDGH 87
L + ++ H
Sbjct: 91 HLNKIEREDH 100
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 21 EWFNYADSDGDGRITGNDATKFFALS--NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
E F DS GDGR+ N+ S +S Q + + D +R+G LG+ +++
Sbjct: 97 EGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSI 156
Query: 79 LISLVQD 85
+ V++
Sbjct: 157 FVCRVRN 163
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 5 TGPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFAL--SNLSRQDLKQVWAIADA 62
T +G +D ++ L+ F D D G IT D + NL+ ++L+++ A AD
Sbjct: 91 TAKMGE--RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADR 148
Query: 63 KRQGYLGYREFIAAMQLISL 82
+ EFI M+ SL
Sbjct: 149 NDDNEIDEDEFIRIMKKTSL 168
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 19 YLEWFNYADSDGDGRITGND-ATKFFAL-SNLSRQDLKQVWAIADAKRQGYLGYREFIAA 76
+ E F D DGDG IT + AT +L N + ++L+ + + DA G + + EF++
Sbjct: 12 FKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSL 71
Query: 77 M 77
M
Sbjct: 72 M 72
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREF 73
F DSD G+I+ + F +S++ + K V + D G + + EF
Sbjct: 424 FRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEF 474
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo
Form
Length = 190
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 22/76 (28%)
Query: 7 PIGSCSK-DHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQ 65
P G +K + QKIY ++F + D FA + V+ + DA +
Sbjct: 39 PSGHLNKSEFQKIYKQFFPFGDPSA------------FA---------EYVFNVFDADKN 77
Query: 66 GYLGYREFIAAMQLIS 81
GY+ ++EFI A+ + S
Sbjct: 78 GYIDFKEFICALSVTS 93
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREF 73
F DSD G+I+ + F +S++ + K V + D G + + EF
Sbjct: 447 FRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEF 497
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREF 73
F DSD G+I+ + F +S++ + K V + D G + + EF
Sbjct: 448 FRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEF 498
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 46/171 (26%)
Query: 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA 257
P+V +LG GKTT + H+ S V R G T + A
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIR---------------------GSAVASREAGGITQHIGA 44
Query: 258 -DMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSW 316
++P + FL KF + L + +DTPG + FT +
Sbjct: 45 TEIPXDVIEGICGDFLKKFSIRET----LPGLFFIDTPGHEA-----------FTTLRKR 89
Query: 317 FAAKCDLILLLFDPHKLDISDEFK----RVITSLRGHDDKIRVVLNKADQV 363
A DL +L+ +DI++ FK + LR + V NK D++
Sbjct: 90 GGALADLAILI-----VDINEGFKPQTQEALNILRXYRTPFVVAANKIDRI 135
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 44 ALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80
L+ + + + QV+ D + G++ + EFIAA+ LI
Sbjct: 50 GLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLI 86
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 23 FNYADSDGDGRITGNDATKFF-ALSNLSRQDLKQVWAIADAKRQGYLGYREFIA 75
F D++GDG+I+ ++ T L + S +++++ A D G++ + EFI+
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFIS 62
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREF 73
F DSD G+I+ + F +S++ + K V + D G + + EF
Sbjct: 424 FRXFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEF 474
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 23 FNYADSDGDGRITGNDATKFF-ALSNLSRQDLKQVWAIADAKRQGYLGYREFIA 75
F D++GDG+I+ ++ T L + S +++++ A D G++ + EFI+
Sbjct: 8 FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFIS 61
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 19 YLEWFNYADSDGDGRITGND-ATKFFAL-SNLSRQDLKQVWAIADAKRQGYLGYREFIAA 76
+ E F D DGDG IT + AT +L N + ++L+ + + DA G + + EF++
Sbjct: 12 FKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSL 71
Query: 77 M 77
M
Sbjct: 72 M 72
>pdb|1DXI|A Chain A, Structure Determination Of Glucose Isomerase From
Streptomyces Murinus At 2.6 Angstroms Resolution
pdb|1DXI|B Chain B, Structure Determination Of Glucose Isomerase From
Streptomyces Murinus At 2.6 Angstroms Resolution
Length = 388
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 35 TGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQVTHDLW 94
G + + F +D VWA A + YL ++ AA + VQ+ L
Sbjct: 278 AGYEGPRHFDFKPPRTEDFDGVWASAAGCMRNYLILKDRAAAFRADPEVQEA------LR 331
Query: 95 NSDVDFQNLKPPAMEGLDKLLANK 118
+ +D Q +P A +GLD LLA++
Sbjct: 332 AARLD-QLAQPTAADGLDALLADR 354
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 46/171 (26%)
Query: 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA 257
P+V +LG GKTT + H+ S V R G T + A
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIRG---------------------SAVASREAGGITQHIGA 44
Query: 258 -DMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSW 316
++P + FL KF + L + +DTPG + FT +
Sbjct: 45 TEIPMDVIEGICGDFLKKFSIRET----LPGLFFIDTPGHEA-----------FTTLRKR 89
Query: 317 FAAKCDLILLLFDPHKLDISDEFK----RVITSLRGHDDKIRVVLNKADQV 363
A DL +L+ +DI++ FK + LR + V NK D++
Sbjct: 90 GGALADLAILI-----VDINEGFKPQTQEALNILRMYRTPFVVAANKIDRI 135
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 19 YLEWFNYADSDGDGRITGND-ATKFFAL-SNLSRQDLKQVWAIADAKRQGYLGYREFIAA 76
+ E F D DGDG IT + AT +L N + ++L+ + + DA G + + EF++
Sbjct: 12 FKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSL 71
Query: 77 M 77
M
Sbjct: 72 M 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,904,597
Number of Sequences: 62578
Number of extensions: 482838
Number of successful extensions: 1442
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1401
Number of HSP's gapped (non-prelim): 66
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)