Query 016165
Match_columns 394
No_of_seqs 350 out of 3498
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:23:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1954 Endocytosis/signaling 100.0 2E-32 4.3E-37 254.5 18.4 239 156-394 17-255 (532)
2 COG1126 GlnQ ABC-type polar am 100.0 5.8E-29 1.3E-33 218.0 9.1 191 176-393 7-225 (240)
3 COG0486 ThdF Predicted GTPase 100.0 8.6E-31 1.9E-35 253.6 -4.1 248 33-367 74-341 (454)
4 PF12763 EF-hand_4: Cytoskelet 99.9 6.6E-27 1.4E-31 186.1 7.6 95 9-110 2-98 (104)
5 COG1120 FepC ABC-type cobalami 99.9 2E-26 4.4E-31 211.2 11.2 192 175-393 6-228 (258)
6 COG1135 AbcC ABC-type metal io 99.9 2.7E-26 5.9E-31 211.1 9.6 183 186-393 19-231 (339)
7 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 8.6E-26 1.9E-30 206.0 8.7 201 175-393 8-227 (254)
8 COG1117 PstB ABC-type phosphat 99.9 2.3E-24 5E-29 188.4 12.6 194 176-393 12-237 (253)
9 COG1125 OpuBA ABC-type proline 99.9 4.8E-25 1E-29 197.4 7.6 192 174-392 4-224 (309)
10 COG2884 FtsE Predicted ATPase 99.9 1.3E-24 2.9E-29 186.6 9.1 186 175-386 5-219 (223)
11 COG3842 PotA ABC-type spermidi 99.9 5.7E-25 1.2E-29 210.2 7.4 192 175-393 9-226 (352)
12 COG0411 LivG ABC-type branched 99.9 2.8E-25 6E-30 198.7 4.8 189 176-391 9-237 (250)
13 COG1116 TauB ABC-type nitrate/ 99.9 1.5E-24 3.2E-29 195.5 9.5 178 176-380 8-207 (248)
14 COG3638 ABC-type phosphate/pho 99.9 1.8E-24 3.9E-29 192.1 9.5 199 175-390 7-234 (258)
15 COG1136 SalX ABC-type antimicr 99.9 2.8E-24 6.2E-29 193.3 9.0 186 173-383 5-221 (226)
16 COG3839 MalK ABC-type sugar tr 99.9 1.8E-24 3.8E-29 205.8 8.0 192 175-393 7-223 (338)
17 COG1118 CysA ABC-type sulfate/ 99.9 6E-24 1.3E-28 195.2 7.4 190 177-393 8-227 (345)
18 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.8E-25 1E-29 220.1 -4.3 248 32-365 63-325 (442)
19 COG1127 Ttg2A ABC-type transpo 99.9 7.8E-23 1.7E-27 182.2 9.9 194 173-393 10-235 (263)
20 TIGR02314 ABC_MetN D-methionin 99.9 5.5E-23 1.2E-27 199.1 8.7 192 176-392 6-229 (343)
21 COG3840 ThiQ ABC-type thiamine 99.9 1.3E-22 2.7E-27 173.2 9.6 191 176-393 6-219 (231)
22 PRK11650 ugpC glycerol-3-phosp 99.9 7.5E-23 1.6E-27 199.6 8.7 190 176-392 8-223 (356)
23 COG1137 YhbG ABC-type (unclass 99.9 8.9E-24 1.9E-28 182.9 1.8 189 176-391 9-226 (243)
24 PRK11432 fbpC ferric transport 99.9 8.6E-23 1.9E-27 198.6 8.6 192 175-393 10-226 (351)
25 COG1131 CcmA ABC-type multidru 99.9 7.1E-23 1.5E-27 194.7 7.7 189 175-390 8-223 (293)
26 TIGR03265 PhnT2 putative 2-ami 99.9 9.5E-23 2.1E-27 198.6 8.5 192 175-393 8-224 (353)
27 COG4598 HisP ABC-type histidin 99.9 3.7E-23 8E-28 176.1 4.2 193 174-393 9-241 (256)
28 TIGR03258 PhnT 2-aminoethylpho 99.9 1.5E-22 3.3E-27 197.5 9.0 194 173-393 7-228 (362)
29 COG1124 DppF ABC-type dipeptid 99.9 3.8E-22 8.2E-27 178.5 10.3 191 177-392 9-230 (252)
30 COG4555 NatA ABC-type Na+ tran 99.9 5.7E-23 1.2E-27 178.1 4.5 190 176-391 6-220 (245)
31 PRK10851 sulfate/thiosulfate t 99.9 2.1E-22 4.5E-27 196.3 8.8 190 176-392 7-225 (353)
32 PRK09452 potA putrescine/sperm 99.9 1.9E-22 4.2E-27 197.6 8.5 191 175-392 18-233 (375)
33 PRK09536 btuD corrinoid ABC tr 99.9 3.6E-22 7.8E-27 196.9 9.1 191 175-392 7-227 (402)
34 PRK13537 nodulation ABC transp 99.9 2.8E-22 6.2E-27 192.1 8.1 190 175-391 11-225 (306)
35 cd03261 ABC_Org_Solvent_Resist 99.9 3.9E-22 8.5E-27 184.3 8.6 189 176-391 5-224 (235)
36 COG0410 LivF ABC-type branched 99.9 5.8E-22 1.2E-26 176.1 8.7 189 176-391 8-224 (237)
37 PRK13536 nodulation factor exp 99.9 4.4E-22 9.5E-27 193.0 8.4 193 172-391 42-259 (340)
38 KOG1029 Endocytic adaptor prot 99.9 1.1E-21 2.3E-26 195.6 10.6 94 4-98 3-96 (1118)
39 PRK05291 trmE tRNA modificatio 99.9 6.4E-24 1.4E-28 213.2 -5.3 247 33-365 72-336 (449)
40 PRK11000 maltose/maltodextrin 99.9 5.9E-22 1.3E-26 194.4 8.7 191 175-392 7-222 (369)
41 TIGR01186 proV glycine betaine 99.9 4.6E-22 1E-26 193.8 7.5 186 180-392 2-218 (363)
42 cd03265 ABC_DrrA DrrA is the A 99.9 1E-21 2.2E-26 179.7 8.9 188 176-390 5-218 (220)
43 PRK11607 potG putrescine trans 99.9 8.3E-22 1.8E-26 193.4 8.4 191 175-392 23-238 (377)
44 TIGR00960 3a0501s02 Type II (G 99.9 1.3E-21 2.7E-26 178.6 8.6 182 176-382 6-216 (216)
45 cd03219 ABC_Mj1267_LivG_branch 99.9 1.6E-21 3.4E-26 180.3 9.4 190 176-392 5-231 (236)
46 COG1122 CbiO ABC-type cobalt t 99.9 1.2E-21 2.6E-26 179.3 8.2 192 175-392 7-227 (235)
47 cd03296 ABC_CysA_sulfate_impor 99.8 1.5E-21 3.3E-26 180.8 8.8 190 175-391 6-224 (239)
48 cd03218 ABC_YhbG The ABC trans 99.8 1.9E-21 4.2E-26 179.3 9.3 189 176-391 5-220 (232)
49 TIGR01188 drrA daunorubicin re 99.8 8.7E-22 1.9E-26 188.6 7.3 184 180-390 2-210 (302)
50 cd03259 ABC_Carb_Solutes_like 99.8 1.6E-21 3.6E-26 177.4 8.7 183 176-385 5-212 (213)
51 TIGR01288 nodI ATP-binding ABC 99.8 1.5E-21 3.4E-26 187.0 8.5 190 175-391 8-222 (303)
52 PRK11153 metN DL-methionine tr 99.8 1.6E-21 3.4E-26 189.8 8.4 192 176-392 6-229 (343)
53 cd03301 ABC_MalK_N The N-termi 99.8 3.3E-21 7.1E-26 175.5 9.0 184 176-386 5-213 (213)
54 COG4181 Predicted ABC-type tra 99.8 4.9E-21 1.1E-25 161.9 9.0 185 175-384 12-226 (228)
55 cd03258 ABC_MetN_methionine_tr 99.8 2.8E-21 6.1E-26 178.3 8.4 191 176-391 6-228 (233)
56 cd03266 ABC_NatA_sodium_export 99.8 2.9E-21 6.3E-26 176.4 8.1 186 175-385 5-217 (218)
57 TIGR02315 ABC_phnC phosphonate 99.8 3.5E-21 7.5E-26 178.9 8.8 188 176-390 6-232 (243)
58 cd03294 ABC_Pro_Gly_Bertaine T 99.8 2.2E-21 4.7E-26 182.9 7.2 189 176-391 29-248 (269)
59 cd03264 ABC_drug_resistance_li 99.8 4.3E-21 9.3E-26 174.4 8.6 182 176-385 5-210 (211)
60 PRK09493 glnQ glutamine ABC tr 99.8 5.1E-21 1.1E-25 177.5 9.1 188 176-390 6-222 (240)
61 cd03268 ABC_BcrA_bacitracin_re 99.8 4.4E-21 9.6E-26 174.0 8.4 183 176-385 5-207 (208)
62 PRK13651 cobalt transporter AT 99.8 5.2E-21 1.1E-25 183.1 9.1 193 175-392 6-253 (305)
63 PRK11629 lolD lipoprotein tran 99.8 6.4E-21 1.4E-25 176.0 9.5 189 175-388 9-229 (233)
64 cd03224 ABC_TM1139_LivF_branch 99.8 4.3E-21 9.3E-26 175.8 8.2 190 176-392 5-220 (222)
65 cd03256 ABC_PhnC_transporter A 99.8 5.9E-21 1.3E-25 177.0 9.2 189 176-390 5-231 (241)
66 COG4175 ProV ABC-type proline/ 99.8 4.1E-21 8.8E-26 177.0 7.9 181 188-393 43-254 (386)
67 PRK11831 putative ABC transpor 99.8 4E-21 8.6E-26 181.2 7.9 190 175-391 11-231 (269)
68 TIGR03005 ectoine_ehuA ectoine 99.8 6.2E-21 1.3E-25 178.2 9.0 189 176-391 5-234 (252)
69 PRK11144 modC molybdate transp 99.8 4.1E-21 8.9E-26 187.5 8.1 189 175-392 4-217 (352)
70 COG0444 DppD ABC-type dipeptid 99.8 6.6E-21 1.4E-25 177.7 9.0 200 172-393 4-243 (316)
71 cd03260 ABC_PstB_phosphate_tra 99.8 7.5E-21 1.6E-25 174.8 9.2 191 176-390 5-226 (227)
72 COG4148 ModC ABC-type molybdat 99.8 8.8E-21 1.9E-25 172.0 9.3 180 191-393 16-218 (352)
73 PRK11300 livG leucine/isoleuci 99.8 6.6E-21 1.4E-25 178.3 8.9 189 175-390 9-240 (255)
74 PRK11264 putative amino-acid A 99.8 7.7E-21 1.7E-25 177.3 9.1 190 175-391 7-231 (250)
75 PRK11231 fecE iron-dicitrate t 99.8 7.5E-21 1.6E-25 177.9 8.9 189 176-391 7-225 (255)
76 KOG1191 Mitochondrial GTPase [ 99.8 8.3E-22 1.8E-26 190.7 2.5 232 74-365 138-404 (531)
77 PRK10895 lipopolysaccharide AB 99.8 6.8E-21 1.5E-25 176.7 8.3 189 176-391 8-224 (241)
78 COG4152 ABC-type uncharacteriz 99.8 4.7E-21 1E-25 170.8 6.9 189 176-391 7-217 (300)
79 PRK11247 ssuB aliphatic sulfon 99.8 8.4E-21 1.8E-25 177.5 9.0 190 172-388 13-218 (257)
80 cd03293 ABC_NrtD_SsuB_transpor 99.8 8.7E-21 1.9E-25 173.6 8.9 188 176-388 5-218 (220)
81 TIGR02673 FtsE cell division A 99.8 9.9E-21 2.1E-25 172.4 9.1 179 176-381 6-214 (214)
82 cd03269 ABC_putative_ATPase Th 99.8 9.1E-21 2E-25 172.2 8.8 183 176-385 5-209 (210)
83 PRK11124 artP arginine transpo 99.8 8.6E-21 1.9E-25 176.1 8.8 188 175-389 6-226 (242)
84 cd03226 ABC_cobalt_CbiO_domain 99.8 7.8E-21 1.7E-25 172.0 8.3 182 176-383 4-205 (205)
85 cd03263 ABC_subfamily_A The AB 99.8 8E-21 1.7E-25 173.8 8.3 189 176-390 5-218 (220)
86 TIGR03415 ABC_choXWV_ATP choli 99.8 4.3E-21 9.2E-26 187.9 6.5 187 178-391 31-252 (382)
87 TIGR03411 urea_trans_UrtD urea 99.8 1.1E-20 2.5E-25 175.3 9.1 188 176-391 7-229 (242)
88 PRK11614 livF leucine/isoleuci 99.8 8.7E-21 1.9E-25 175.5 8.2 190 175-391 9-224 (237)
89 COG1129 MglA ABC-type sugar tr 99.8 6E-21 1.3E-25 189.0 7.5 186 175-387 12-228 (500)
90 COG3845 ABC-type uncharacteriz 99.8 6.4E-21 1.4E-25 185.4 7.5 188 173-387 6-223 (501)
91 PRK10619 histidine/lysine/argi 99.8 1.1E-20 2.4E-25 177.0 8.9 192 173-391 7-239 (257)
92 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 1E-20 2.2E-25 172.8 8.3 182 176-382 5-218 (218)
93 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 6.6E-21 1.4E-25 176.3 7.1 188 176-390 6-218 (236)
94 COG4559 ABC-type hemin transpo 99.8 1.5E-20 3.2E-25 164.4 8.9 194 173-393 3-230 (259)
95 PRK10253 iron-enterobactin tra 99.8 1.2E-20 2.5E-25 177.6 8.9 192 173-391 9-231 (265)
96 cd03262 ABC_HisP_GlnQ_permease 99.8 1.5E-20 3.2E-25 171.1 9.2 180 176-382 5-213 (213)
97 TIGR03522 GldA_ABC_ATP gliding 99.8 9.2E-21 2E-25 181.4 8.1 189 175-391 6-219 (301)
98 PRK10908 cell division protein 99.8 1.7E-20 3.8E-25 171.8 9.6 183 176-385 6-218 (222)
99 TIGR02142 modC_ABC molybdenum 99.8 9.4E-21 2E-25 185.2 8.2 189 175-392 3-220 (354)
100 TIGR02211 LolD_lipo_ex lipopro 99.8 1.1E-20 2.3E-25 173.1 8.0 183 176-383 6-220 (221)
101 PRK13637 cbiO cobalt transport 99.8 1.3E-20 2.7E-25 179.3 8.5 193 175-392 6-233 (287)
102 TIGR00972 3a0107s01c2 phosphat 99.8 1.7E-20 3.6E-25 174.7 9.2 192 176-391 6-230 (247)
103 PRK15079 oligopeptide ABC tran 99.8 1E-20 2.2E-25 182.9 7.9 182 186-392 34-250 (331)
104 PRK13650 cbiO cobalt transport 99.8 1E-20 2.2E-25 179.2 7.6 193 175-392 8-228 (279)
105 PRK10575 iron-hydroxamate tran 99.8 1.4E-20 3.1E-25 177.0 8.6 190 174-390 14-234 (265)
106 PRK15439 autoinducer 2 ABC tra 99.8 1.7E-20 3.7E-25 192.3 9.7 191 174-391 14-227 (510)
107 PRK13647 cbiO cobalt transport 99.8 1.6E-20 3.4E-25 177.5 8.8 189 175-389 8-223 (274)
108 PRK09473 oppD oligopeptide tra 99.8 1.2E-20 2.7E-25 182.4 8.2 185 186-392 29-250 (330)
109 PRK13643 cbiO cobalt transport 99.8 1.6E-20 3.4E-25 178.7 8.6 192 175-392 5-232 (288)
110 TIGR03873 F420-0_ABC_ATP propo 99.8 1.8E-20 3.8E-25 175.5 8.7 189 176-391 6-224 (256)
111 cd03225 ABC_cobalt_CbiO_domain 99.8 2.2E-20 4.9E-25 169.7 9.1 180 177-381 5-211 (211)
112 PRK13644 cbiO cobalt transport 99.8 1.4E-20 3E-25 177.9 7.9 190 176-391 6-222 (274)
113 cd03292 ABC_FtsE_transporter F 99.8 1.9E-20 4.1E-25 170.5 8.6 181 176-382 5-214 (214)
114 PRK13548 hmuV hemin importer A 99.8 2.4E-20 5.2E-25 174.8 9.3 189 176-391 7-228 (258)
115 cd03295 ABC_OpuCA_Osmoprotecti 99.8 1.7E-20 3.8E-25 174.1 8.3 188 176-389 5-221 (242)
116 COG4161 ArtP ABC-type arginine 99.8 2.3E-20 4.9E-25 156.5 8.0 188 177-389 8-226 (242)
117 cd03298 ABC_ThiQ_thiamine_tran 99.8 3.4E-20 7.3E-25 168.6 9.9 181 176-385 5-210 (211)
118 PRK09700 D-allose transporter 99.8 1.9E-20 4.1E-25 192.0 9.2 190 175-391 9-232 (510)
119 PRK13635 cbiO cobalt transport 99.8 1.5E-20 3.3E-25 178.0 7.9 192 175-391 9-227 (279)
120 PRK13641 cbiO cobalt transport 99.8 2.2E-20 4.8E-25 177.7 9.0 190 176-390 7-231 (287)
121 PRK13646 cbiO cobalt transport 99.8 2E-20 4.3E-25 177.9 8.7 192 175-392 6-234 (286)
122 PRK13638 cbiO cobalt transport 99.8 1.7E-20 3.6E-25 177.1 8.0 190 175-391 5-223 (271)
123 PRK10070 glycine betaine trans 99.8 1.1E-20 2.3E-25 186.3 6.9 185 180-391 37-252 (400)
124 TIGR03740 galliderm_ABC gallid 99.8 2.4E-20 5.2E-25 171.0 8.7 187 176-389 5-209 (223)
125 PRK13634 cbiO cobalt transport 99.8 1.6E-20 3.5E-25 178.8 7.7 193 175-392 6-234 (290)
126 PRK11022 dppD dipeptide transp 99.8 2.4E-20 5.2E-25 180.2 8.7 196 176-392 8-242 (326)
127 cd03257 ABC_NikE_OppD_transpor 99.8 4.3E-20 9.4E-25 169.8 10.0 185 176-385 6-227 (228)
128 PRK11248 tauB taurine transpor 99.8 4.1E-20 8.8E-25 172.9 9.9 184 176-386 6-213 (255)
129 PRK14247 phosphate ABC transpo 99.8 4.9E-20 1.1E-24 171.9 10.3 194 175-391 7-232 (250)
130 PRK15093 antimicrobial peptide 99.8 2.4E-20 5.3E-25 180.6 8.6 196 176-392 8-247 (330)
131 TIGR01277 thiQ thiamine ABC tr 99.8 4E-20 8.7E-25 168.4 9.5 184 176-388 5-213 (213)
132 PRK13652 cbiO cobalt transport 99.8 3.2E-20 7E-25 175.7 9.1 191 175-391 7-225 (277)
133 PRK14250 phosphate ABC transpo 99.8 2.8E-20 6E-25 172.7 8.4 190 175-392 7-220 (241)
134 cd03300 ABC_PotA_N PotA is an 99.8 3.4E-20 7.4E-25 171.0 8.9 189 176-391 5-218 (232)
135 PRK09984 phosphonate/organopho 99.8 3.1E-20 6.8E-25 174.4 8.8 192 175-390 8-239 (262)
136 cd03297 ABC_ModC_molybdenum_tr 99.8 4E-20 8.6E-25 168.5 9.2 182 175-385 4-213 (214)
137 PRK11308 dppF dipeptide transp 99.8 2.6E-20 5.6E-25 179.9 8.4 182 186-392 28-243 (327)
138 PRK14242 phosphate transporter 99.8 4.2E-20 9.1E-25 172.7 9.5 194 174-391 9-235 (253)
139 COG1123 ATPase components of v 99.8 3E-20 6.5E-25 185.3 8.9 201 172-393 8-244 (539)
140 PRK10762 D-ribose transporter 99.8 3.4E-20 7.3E-25 189.8 9.5 190 175-391 8-228 (501)
141 COG4604 CeuD ABC-type enteroch 99.8 4.3E-21 9.3E-26 165.9 2.4 191 176-393 6-225 (252)
142 cd03235 ABC_Metallic_Cations A 99.8 3.5E-20 7.6E-25 168.7 8.5 179 176-381 4-209 (213)
143 TIGR03410 urea_trans_UrtE urea 99.8 3.3E-20 7.2E-25 170.9 8.5 189 176-391 5-219 (230)
144 PRK13631 cbiO cobalt transport 99.8 4.1E-20 8.9E-25 178.0 9.4 193 174-392 24-264 (320)
145 PRK10584 putative ABC transpor 99.8 3.9E-20 8.4E-25 170.2 8.7 185 175-384 10-226 (228)
146 PRK14267 phosphate ABC transpo 99.8 5.9E-20 1.3E-24 171.7 9.5 194 175-391 8-235 (253)
147 PRK14273 phosphate ABC transpo 99.8 6.7E-20 1.4E-24 171.4 9.6 195 174-392 10-237 (254)
148 PRK13636 cbiO cobalt transport 99.8 3.9E-20 8.4E-25 175.6 7.9 192 175-392 9-230 (283)
149 TIGR01184 ntrCD nitrate transp 99.8 5.5E-20 1.2E-24 169.4 8.6 177 190-391 2-202 (230)
150 PRK13648 cbiO cobalt transport 99.8 4.7E-20 1E-24 173.9 8.3 192 175-391 11-229 (269)
151 PRK10771 thiQ thiamine transpo 99.8 7.2E-20 1.6E-24 168.9 9.4 186 176-390 6-216 (232)
152 TIGR01978 sufC FeS assembly AT 99.8 7.2E-20 1.6E-24 170.0 9.4 189 176-389 5-230 (243)
153 TIGR02769 nickel_nikE nickel i 99.8 6.9E-20 1.5E-24 172.4 9.1 182 186-392 24-239 (265)
154 PRK13549 xylose transporter AT 99.8 6.5E-20 1.4E-24 187.9 9.7 192 175-391 9-230 (506)
155 KOG1029 Endocytic adaptor prot 99.8 3.9E-20 8.5E-25 184.6 7.2 102 6-113 184-285 (1118)
156 PRK13649 cbiO cobalt transport 99.8 6.8E-20 1.5E-24 173.8 8.5 190 176-391 7-232 (280)
157 PRK10982 galactose/methyl gala 99.8 7.9E-20 1.7E-24 186.7 9.6 188 176-390 3-220 (491)
158 PRK11701 phnK phosphonate C-P 99.8 9.3E-20 2E-24 170.8 9.3 191 175-392 10-240 (258)
159 COG4608 AppF ABC-type oligopep 99.8 6.6E-20 1.4E-24 167.6 8.0 158 187-393 27-199 (268)
160 TIGR00968 3a0106s01 sulfate AB 99.8 6.9E-20 1.5E-24 169.6 8.2 189 176-391 5-218 (237)
161 PRK13639 cbiO cobalt transport 99.8 6.1E-20 1.3E-24 173.6 8.0 191 176-392 6-225 (275)
162 PRK14268 phosphate ABC transpo 99.8 1E-19 2.2E-24 170.6 9.2 194 175-392 16-241 (258)
163 PRK14235 phosphate transporter 99.8 8.6E-20 1.9E-24 171.9 8.7 196 172-391 20-249 (267)
164 PRK14269 phosphate ABC transpo 99.8 1.2E-19 2.5E-24 169.0 9.2 191 175-391 6-228 (246)
165 PRK13640 cbiO cobalt transport 99.8 7.3E-20 1.6E-24 173.7 7.7 192 175-391 9-230 (282)
166 PRK14256 phosphate ABC transpo 99.8 1.7E-19 3.7E-24 168.5 9.9 196 174-392 7-235 (252)
167 PRK13632 cbiO cobalt transport 99.8 8.4E-20 1.8E-24 172.3 7.6 191 175-390 11-228 (271)
168 PRK14245 phosphate ABC transpo 99.8 1.6E-19 3.4E-24 168.5 9.2 193 175-391 7-232 (250)
169 PRK10744 pstB phosphate transp 99.8 1.6E-19 3.4E-24 169.5 9.3 193 175-391 17-242 (260)
170 PRK14257 phosphate ABC transpo 99.8 1.6E-19 3.4E-24 174.5 9.5 197 174-392 83-312 (329)
171 PRK14244 phosphate ABC transpo 99.8 1.5E-19 3.3E-24 168.6 9.1 192 176-391 10-235 (251)
172 PRK13547 hmuV hemin importer A 99.8 1.4E-19 3.1E-24 170.6 9.0 195 176-391 6-242 (272)
173 PRK14272 phosphate ABC transpo 99.8 2.4E-19 5.2E-24 167.4 9.7 194 175-391 8-234 (252)
174 PRK14271 phosphate ABC transpo 99.8 2.2E-19 4.8E-24 169.8 9.5 195 173-391 23-249 (276)
175 PRK14270 phosphate ABC transpo 99.8 2.3E-19 4.9E-24 167.5 9.4 194 175-392 8-234 (251)
176 PRK14240 phosphate transporter 99.8 2.8E-19 6.1E-24 166.8 9.9 193 175-391 7-232 (250)
177 PRK14258 phosphate ABC transpo 99.8 2.2E-19 4.9E-24 168.5 9.2 197 173-392 9-244 (261)
178 PRK13642 cbiO cobalt transport 99.8 1.4E-19 3E-24 171.4 7.8 193 175-392 8-228 (277)
179 PRK14248 phosphate ABC transpo 99.8 2.5E-19 5.5E-24 168.8 9.5 196 172-391 22-250 (268)
180 PRK15056 manganese/iron transp 99.8 3.9E-19 8.5E-24 167.8 10.6 191 174-391 9-228 (272)
181 PRK15112 antimicrobial peptide 99.8 2.1E-19 4.6E-24 169.2 8.8 181 186-391 26-237 (267)
182 PRK13633 cobalt transporter AT 99.8 1.1E-19 2.4E-24 172.3 6.8 192 175-391 8-231 (280)
183 PRK14241 phosphate transporter 99.8 2.5E-19 5.4E-24 168.0 9.1 196 173-391 6-240 (258)
184 PRK11288 araG L-arabinose tran 99.8 2.4E-19 5.2E-24 183.5 9.8 185 175-386 8-222 (501)
185 TIGR02323 CP_lyasePhnK phospho 99.8 3.3E-19 7.1E-24 166.6 9.8 190 175-391 7-236 (253)
186 PRK14249 phosphate ABC transpo 99.8 3.5E-19 7.6E-24 166.3 9.8 193 175-391 8-233 (251)
187 cd03234 ABCG_White The White s 99.8 4.1E-19 9E-24 163.2 10.1 190 175-386 7-226 (226)
188 cd03230 ABC_DR_subfamily_A Thi 99.8 5.3E-19 1.2E-23 155.7 10.4 155 176-382 5-173 (173)
189 cd03299 ABC_ModC_like Archeal 99.8 2.8E-19 6E-24 165.3 9.0 186 176-389 5-215 (235)
190 PRK10261 glutathione transport 99.8 1.8E-19 4E-24 188.6 8.7 181 187-392 338-552 (623)
191 TIGR02633 xylG D-xylose ABC tr 99.8 2.2E-19 4.8E-24 183.8 9.2 190 176-390 6-227 (500)
192 PRK10938 putative molybdenum t 99.8 2.2E-19 4.8E-24 183.4 9.1 188 175-390 7-221 (490)
193 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.4E-19 3E-24 170.6 7.0 191 173-392 4-224 (275)
194 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1.7E-19 3.7E-24 165.5 7.2 176 178-386 29-224 (224)
195 PRK14251 phosphate ABC transpo 99.8 3.2E-19 6.9E-24 166.5 9.0 194 175-392 8-234 (251)
196 cd03229 ABC_Class3 This class 99.8 6.8E-19 1.5E-23 155.7 10.7 156 176-381 5-178 (178)
197 PRK13645 cbiO cobalt transport 99.8 2.5E-19 5.5E-24 170.6 8.4 195 172-391 7-238 (289)
198 PRK14237 phosphate transporter 99.8 4.8E-19 1E-23 166.8 10.1 195 174-392 23-250 (267)
199 PRK14262 phosphate ABC transpo 99.8 3.5E-19 7.6E-24 166.2 9.0 193 175-391 7-232 (250)
200 cd03214 ABC_Iron-Siderophores_ 99.8 3.8E-19 8.3E-24 157.6 8.8 162 176-385 4-179 (180)
201 PRK14239 phosphate transporter 99.8 4E-19 8.8E-24 165.9 9.4 194 175-392 9-235 (252)
202 cd03252 ABCC_Hemolysin The ABC 99.8 2.3E-19 5E-24 166.0 7.6 189 176-391 5-223 (237)
203 PRK14274 phosphate ABC transpo 99.8 3.9E-19 8.5E-24 166.7 9.1 194 175-392 16-242 (259)
204 cd03369 ABCC_NFT1 Domain 2 of 99.8 7.3E-19 1.6E-23 159.3 10.4 183 175-387 10-206 (207)
205 cd03245 ABCC_bacteriocin_expor 99.8 4.7E-19 1E-23 162.0 9.1 184 175-385 6-219 (220)
206 PRK14253 phosphate ABC transpo 99.8 4.8E-19 1E-23 165.1 9.3 192 176-391 8-231 (249)
207 TIGR03608 L_ocin_972_ABC putat 99.8 3.4E-19 7.4E-24 161.3 8.0 160 176-357 3-191 (206)
208 PRK14261 phosphate ABC transpo 99.8 5.2E-19 1.1E-23 165.3 9.5 193 175-391 10-235 (253)
209 cd03244 ABCC_MRP_domain2 Domai 99.8 4E-19 8.7E-24 162.6 8.5 186 175-387 6-220 (221)
210 COG4525 TauB ABC-type taurine 99.8 5.9E-19 1.3E-23 152.5 8.9 184 176-384 8-215 (259)
211 COG4674 Uncharacterized ABC-ty 99.8 8.8E-20 1.9E-24 157.5 3.8 191 175-394 9-245 (249)
212 COG4988 CydD ABC-type transpor 99.8 2.7E-19 5.8E-24 177.9 7.6 193 172-392 321-542 (559)
213 KOG1955 Ral-GTPase effector RA 99.8 4.2E-19 9.1E-24 170.0 8.6 90 6-95 220-309 (737)
214 cd03233 ABC_PDR_domain1 The pl 99.8 1.2E-18 2.6E-23 157.3 10.9 177 176-385 8-201 (202)
215 PRK13549 xylose transporter AT 99.8 4.9E-19 1.1E-23 181.4 9.3 191 176-390 264-491 (506)
216 PRK14238 phosphate transporter 99.8 6.2E-19 1.3E-23 166.4 9.3 196 173-392 26-254 (271)
217 COG4172 ABC-type uncharacteriz 99.8 8.2E-19 1.8E-23 166.4 9.9 202 172-393 9-247 (534)
218 PRK09544 znuC high-affinity zi 99.8 3.5E-19 7.7E-24 166.1 7.5 183 175-390 8-206 (251)
219 CHL00131 ycf16 sulfate ABC tra 99.8 7E-19 1.5E-23 164.3 9.5 190 175-389 11-237 (252)
220 PRK14254 phosphate ABC transpo 99.8 6.1E-19 1.3E-23 167.5 9.1 194 174-391 42-267 (285)
221 PRK14259 phosphate ABC transpo 99.8 4.8E-19 1E-23 167.0 8.3 194 175-392 17-252 (269)
222 TIGR02770 nickel_nikD nickel i 99.8 3.9E-19 8.4E-24 163.8 7.6 184 188-392 1-214 (230)
223 COG1123 ATPase components of v 99.8 6.2E-19 1.3E-23 175.9 9.5 183 186-393 304-519 (539)
224 PRK10418 nikD nickel transport 99.8 5.7E-19 1.2E-23 165.1 8.7 193 175-391 8-228 (254)
225 PRK14265 phosphate ABC transpo 99.8 6.9E-19 1.5E-23 166.3 9.3 195 174-392 23-257 (274)
226 PRK10419 nikE nickel transport 99.8 6.5E-19 1.4E-23 166.0 9.1 181 186-391 25-239 (268)
227 PRK14236 phosphate transporter 99.8 7.8E-19 1.7E-23 165.8 9.6 195 173-391 27-254 (272)
228 PRK14246 phosphate ABC transpo 99.8 9.8E-19 2.1E-23 163.7 10.1 198 172-391 11-239 (257)
229 PRK14255 phosphate ABC transpo 99.8 8.6E-19 1.9E-23 163.7 9.6 195 174-392 8-235 (252)
230 PRK14263 phosphate ABC transpo 99.8 7.7E-19 1.7E-23 164.8 9.3 192 177-392 14-244 (261)
231 cd03246 ABCC_Protease_Secretio 99.8 1.3E-18 2.9E-23 153.2 10.2 155 176-382 5-173 (173)
232 PRK14243 phosphate transporter 99.8 6.7E-19 1.5E-23 165.5 8.8 194 175-392 14-247 (264)
233 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 3.6E-19 7.8E-24 188.9 7.8 191 172-391 452-671 (686)
234 cd03267 ABC_NatA_like Similar 99.8 5.6E-19 1.2E-23 163.4 8.0 179 180-385 30-235 (236)
235 PRK09700 D-allose transporter 99.8 7E-19 1.5E-23 180.5 9.5 177 187-388 277-493 (510)
236 COG1119 ModF ABC-type molybden 99.8 2.7E-19 5.9E-24 160.4 5.5 196 173-387 33-256 (257)
237 cd03216 ABC_Carb_Monos_I This 99.8 2.7E-18 5.8E-23 149.7 11.4 149 176-384 5-162 (163)
238 COG2274 SunT ABC-type bacterio 99.8 4.9E-19 1.1E-23 185.0 7.8 193 172-391 472-694 (709)
239 cd03251 ABCC_MsbA MsbA is an e 99.8 9.6E-19 2.1E-23 161.5 8.9 189 176-391 5-223 (234)
240 PRK10247 putative ABC transpor 99.8 6.7E-19 1.5E-23 161.6 7.8 175 176-378 12-211 (225)
241 PRK14252 phosphate ABC transpo 99.8 1.2E-18 2.5E-23 164.1 9.5 194 175-392 20-248 (265)
242 PRK14275 phosphate ABC transpo 99.8 7.2E-19 1.6E-23 167.1 8.1 193 175-391 43-268 (286)
243 PRK15134 microcin C ABC transp 99.8 6.4E-19 1.4E-23 181.5 8.4 197 175-391 9-244 (529)
244 cd03217 ABC_FeS_Assembly ABC-t 99.8 2.5E-18 5.4E-23 155.0 11.0 166 176-387 5-188 (200)
245 PRK10261 glutathione transport 99.8 6.3E-19 1.4E-23 184.5 8.1 198 176-391 17-256 (623)
246 PRK11176 lipid transporter ATP 99.8 7.3E-19 1.6E-23 183.3 8.4 193 172-391 342-565 (582)
247 PRK14260 phosphate ABC transpo 99.8 1.1E-18 2.5E-23 163.5 8.8 195 174-392 10-242 (259)
248 TIGR03269 met_CoM_red_A2 methy 99.8 9.8E-19 2.1E-23 179.8 9.1 192 176-390 5-255 (520)
249 PRK15134 microcin C ABC transp 99.8 9E-19 2E-23 180.4 8.7 181 186-392 299-514 (529)
250 cd03254 ABCC_Glucan_exporter_l 99.8 5.2E-19 1.1E-23 162.7 6.2 189 175-391 6-224 (229)
251 PRK14266 phosphate ABC transpo 99.8 1.5E-18 3.2E-23 161.9 9.3 192 176-391 8-232 (250)
252 PRK13538 cytochrome c biogenes 99.8 8E-19 1.7E-23 158.7 7.3 169 176-371 6-195 (204)
253 PRK13543 cytochrome c biogenes 99.8 1.1E-18 2.5E-23 158.9 8.0 176 175-377 15-210 (214)
254 TIGR02982 heterocyst_DevA ABC 99.8 9.9E-19 2.1E-23 160.0 7.5 182 176-382 6-219 (220)
255 cd03231 ABC_CcmA_heme_exporter 99.8 1.4E-18 3.1E-23 156.7 8.4 169 176-371 5-191 (201)
256 PRK03695 vitamin B12-transport 99.8 1.1E-18 2.3E-23 162.6 7.7 178 188-391 11-220 (248)
257 cd03215 ABC_Carb_Monos_II This 99.8 2.8E-18 6.2E-23 152.3 10.1 149 188-382 15-182 (182)
258 TIGR03375 type_I_sec_LssB type 99.8 8.6E-19 1.9E-23 186.2 7.9 193 172-391 464-686 (694)
259 PRK09580 sufC cysteine desulfu 99.8 2.4E-18 5.3E-23 160.2 10.0 190 175-389 5-231 (248)
260 TIGR03269 met_CoM_red_A2 methy 99.8 9.9E-19 2.1E-23 179.8 8.0 191 176-391 284-515 (520)
261 PRK11160 cysteine/glutathione 99.8 9.4E-19 2E-23 181.9 7.7 193 172-391 339-560 (574)
262 PRK10790 putative multidrug tr 99.8 9.7E-19 2.1E-23 182.7 7.8 192 172-391 341-561 (592)
263 TIGR02633 xylG D-xylose ABC tr 99.8 1.7E-18 3.6E-23 177.3 9.2 179 186-388 273-487 (500)
264 cd03247 ABCC_cytochrome_bd The 99.8 3E-18 6.5E-23 151.6 9.4 159 176-385 5-177 (178)
265 PRK11288 araG L-arabinose tran 99.8 1.6E-18 3.5E-23 177.4 8.8 179 187-390 267-482 (501)
266 COG0396 sufC Cysteine desulfur 99.8 4.4E-18 9.4E-23 151.0 10.2 187 177-388 9-229 (251)
267 cd03213 ABCG_EPDR ABCG transpo 99.8 5.6E-18 1.2E-22 152.0 11.2 168 175-385 7-193 (194)
268 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1E-18 2.2E-23 186.2 7.4 191 172-391 478-698 (710)
269 PLN03211 ABC transporter G-25; 99.8 1.2E-18 2.5E-23 182.7 7.6 190 177-391 74-294 (659)
270 KOG0057 Mitochondrial Fe/S clu 99.7 1.1E-18 2.4E-23 171.4 6.7 192 171-391 351-572 (591)
271 PRK13539 cytochrome c biogenes 99.7 1.5E-18 3.2E-23 157.3 7.0 171 176-374 7-195 (207)
272 PRK14264 phosphate ABC transpo 99.7 2.8E-18 6E-23 164.6 9.2 193 175-391 49-287 (305)
273 TIGR01257 rim_protein retinal- 99.7 1.7E-18 3.7E-23 196.2 8.4 192 175-391 1941-2157(2272)
274 PRK13546 teichoic acids export 99.7 2.8E-18 6.1E-23 161.0 8.5 173 186-390 37-229 (264)
275 cd03253 ABCC_ATM1_transporter 99.7 1.6E-18 3.5E-23 160.2 6.6 187 176-390 5-221 (236)
276 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 1.6E-18 3.4E-23 160.5 6.5 187 176-389 5-222 (238)
277 cd03232 ABC_PDR_domain2 The pl 99.7 6.3E-18 1.4E-22 151.4 10.2 171 175-386 7-192 (192)
278 KOG0058 Peptide exporter, ABC 99.7 1.9E-18 4E-23 175.3 7.4 195 168-391 462-689 (716)
279 TIGR01842 type_I_sec_PrtD type 99.7 2.4E-18 5.3E-23 177.9 8.4 194 172-391 317-540 (544)
280 COG1134 TagH ABC-type polysacc 99.7 1.7E-18 3.6E-23 155.5 6.2 178 186-392 40-235 (249)
281 PRK13540 cytochrome c biogenes 99.7 3.9E-18 8.4E-23 153.8 8.5 163 175-359 5-186 (200)
282 COG1132 MdlB ABC-type multidru 99.7 1.9E-18 4.1E-23 179.5 7.4 193 172-392 329-551 (567)
283 PRK15439 autoinducer 2 ABC tra 99.7 3.9E-18 8.4E-23 174.9 9.5 178 188-390 278-489 (510)
284 PLN03130 ABC transporter C fam 99.7 1.9E-18 4.2E-23 196.2 7.9 193 172-391 1238-1459(1622)
285 PRK13545 tagH teichoic acids e 99.7 3.2E-18 6.9E-23 171.5 8.5 185 175-391 25-230 (549)
286 cd03288 ABCC_SUR2 The SUR doma 99.7 2.8E-18 6.1E-23 160.7 7.6 192 173-391 21-241 (257)
287 PRK11174 cysteine/glutathione 99.7 2E-18 4.4E-23 180.1 7.4 190 173-391 351-570 (588)
288 PRK10762 D-ribose transporter 99.7 4.4E-18 9.6E-23 174.2 9.5 180 187-391 266-482 (501)
289 TIGR01187 potA spermidine/putr 99.7 2.2E-18 4.8E-23 166.6 6.6 166 202-392 1-189 (325)
290 PLN03232 ABC transporter C fam 99.7 2.4E-18 5.3E-23 195.0 7.8 193 172-391 1235-1456(1495)
291 TIGR01193 bacteriocin_ABC ABC- 99.7 1.7E-18 3.8E-23 184.3 6.2 191 172-391 474-695 (708)
292 cd03250 ABCC_MRP_domain1 Domai 99.7 5E-18 1.1E-22 153.5 8.2 173 176-381 5-204 (204)
293 cd03228 ABCC_MRP_Like The MRP 99.7 1.1E-17 2.3E-22 147.1 9.7 153 176-381 5-171 (171)
294 TIGR01166 cbiO cobalt transpor 99.7 5.2E-18 1.1E-22 151.6 7.5 155 186-360 5-187 (190)
295 TIGR03771 anch_rpt_ABC anchore 99.7 9.5E-18 2.1E-22 153.8 9.4 172 194-391 3-199 (223)
296 TIGR02203 MsbA_lipidA lipid A 99.7 4E-18 8.7E-23 177.3 7.7 193 172-391 331-554 (571)
297 TIGR01189 ccmA heme ABC export 99.7 7.3E-18 1.6E-22 151.7 8.3 162 176-359 5-186 (198)
298 cd03290 ABCC_SUR1_N The SUR do 99.7 8.4E-18 1.8E-22 153.6 8.7 178 176-380 5-217 (218)
299 PRK15064 ABC transporter ATP-b 99.7 8.7E-18 1.9E-22 173.2 9.7 173 176-389 6-238 (530)
300 PRK10789 putative multidrug tr 99.7 5.1E-18 1.1E-22 176.3 7.7 190 175-391 317-536 (569)
301 TIGR00958 3a01208 Conjugate Tr 99.7 4.8E-18 1E-22 180.7 7.4 191 172-391 479-700 (711)
302 COG4987 CydC ABC-type transpor 99.7 4.8E-18 1E-22 166.8 6.6 193 172-391 337-559 (573)
303 TIGR02324 CP_lyasePhnL phospho 99.7 1.8E-17 3.9E-22 152.0 9.9 176 176-376 6-221 (224)
304 cd03248 ABCC_TAP TAP, the Tran 99.7 1.6E-17 3.4E-22 152.6 9.5 181 175-382 15-226 (226)
305 TIGR01846 type_I_sec_HlyB type 99.7 6.9E-18 1.5E-22 179.3 8.0 193 172-391 456-678 (694)
306 TIGR00957 MRP_assoc_pro multi 99.7 6.5E-18 1.4E-22 191.8 8.3 192 173-392 1286-1507(1522)
307 PRK10535 macrolide transporter 99.7 1.2E-17 2.5E-22 175.7 9.4 192 175-391 8-230 (648)
308 TIGR01257 rim_protein retinal- 99.7 1E-17 2.2E-22 190.1 9.0 191 173-389 930-1145(2272)
309 PTZ00243 ABC transporter; Prov 99.7 9.5E-18 2.1E-22 190.2 7.9 194 172-392 1309-1532(1560)
310 COG4167 SapF ABC-type antimicr 99.7 6.6E-18 1.4E-22 144.5 5.0 183 186-393 26-239 (267)
311 PRK13657 cyclic beta-1,2-gluca 99.7 1.1E-17 2.4E-22 174.6 7.7 191 172-390 335-555 (588)
312 KOG0055 Multidrug/pheromone ex 99.7 1E-17 2.2E-22 179.0 7.0 196 169-391 348-574 (1228)
313 TIGR01194 cyc_pep_trnsptr cycl 99.7 2.2E-17 4.8E-22 171.0 9.4 186 172-385 338-551 (555)
314 PRK11819 putative ABC transpor 99.7 2.3E-17 5E-22 170.8 9.2 179 175-388 10-245 (556)
315 PRK15064 ABC transporter ATP-b 99.7 1.4E-17 3E-22 171.7 7.4 181 176-391 324-523 (530)
316 PRK10982 galactose/methyl gala 99.7 3.3E-17 7.2E-22 167.4 9.6 177 187-388 262-475 (491)
317 TIGR01192 chvA glucan exporter 99.7 2E-17 4.3E-22 172.3 7.9 192 172-391 335-556 (585)
318 TIGR02204 MsbA_rel ABC transpo 99.7 2.3E-17 5E-22 171.8 8.1 192 172-390 338-560 (576)
319 cd03236 ABC_RNaseL_inhibitor_d 99.7 3.6E-17 7.8E-22 152.7 8.5 183 175-384 4-218 (255)
320 PRK10938 putative molybdenum t 99.7 2.3E-17 5.1E-22 168.5 7.4 187 175-387 264-486 (490)
321 COG1159 Era GTPase [General fu 99.7 1.2E-16 2.6E-21 147.4 10.8 124 199-367 8-131 (298)
322 cd03222 ABC_RNaseL_inhibitor T 99.7 1.5E-16 3.3E-21 140.0 11.1 136 176-382 5-150 (177)
323 cd03223 ABCD_peroxisomal_ALDP 99.7 1.5E-16 3.3E-21 139.1 11.0 151 176-380 5-163 (166)
324 cd03238 ABC_UvrA The excision 99.7 3.8E-17 8.2E-22 143.7 7.2 149 186-388 8-172 (176)
325 TIGR01271 CFTR_protein cystic 99.7 3E-17 6.5E-22 185.9 8.3 190 175-392 1221-1439(1490)
326 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.3E-16 2.8E-21 136.2 10.0 131 176-381 5-144 (144)
327 COG1101 PhnK ABC-type uncharac 99.7 3.8E-17 8.2E-22 143.5 6.4 174 186-384 19-229 (263)
328 cd03237 ABC_RNaseL_inhibitor_d 99.7 4.4E-17 9.5E-22 151.4 7.2 153 197-380 25-192 (246)
329 PF02421 FeoB_N: Ferrous iron 99.7 9.4E-17 2E-21 137.5 8.6 112 199-364 2-119 (156)
330 PTZ00265 multidrug resistance 99.7 3.9E-17 8.5E-22 184.0 8.0 202 172-391 1166-1450(1466)
331 COG1160 Predicted GTPases [Gen 99.7 2.1E-16 4.6E-21 153.4 12.0 118 198-364 4-126 (444)
332 TIGR02857 CydD thiol reductant 99.7 6.6E-17 1.4E-21 166.7 9.0 177 172-375 321-527 (529)
333 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 8.8E-17 1.9E-21 166.4 9.7 179 175-388 8-243 (552)
334 COG4586 ABC-type uncharacteriz 99.7 5.4E-17 1.2E-21 147.2 6.8 179 187-390 38-243 (325)
335 TIGR00955 3a01204 The Eye Pigm 99.7 5.2E-17 1.1E-21 170.0 7.6 184 186-391 38-254 (617)
336 PRK10522 multidrug transporter 99.7 7.2E-17 1.6E-21 167.0 8.5 184 172-385 323-530 (547)
337 PRK13541 cytochrome c biogenes 99.7 7.7E-17 1.7E-21 144.7 7.5 161 176-359 6-182 (195)
338 PRK15177 Vi polysaccharide exp 99.7 5.4E-17 1.2E-21 147.7 6.5 171 188-390 2-189 (213)
339 COG4107 PhnK ABC-type phosphon 99.7 1.8E-16 3.9E-21 134.7 8.7 191 176-391 11-239 (258)
340 PRK10636 putative ABC transpor 99.7 6.3E-17 1.4E-21 169.7 7.3 179 176-388 317-512 (638)
341 cd03291 ABCC_CFTR1 The CFTR su 99.7 6.4E-17 1.4E-21 153.1 6.1 172 186-391 50-245 (282)
342 COG1160 Predicted GTPases [Gen 99.7 2.2E-16 4.7E-21 153.4 9.8 124 198-365 179-304 (444)
343 COG4172 ABC-type uncharacteriz 99.7 1.1E-16 2.5E-21 152.0 7.2 179 187-393 301-516 (534)
344 COG4619 ABC-type uncharacteriz 99.7 1.7E-16 3.6E-21 134.2 7.4 176 186-387 16-217 (223)
345 KOG0055 Multidrug/pheromone ex 99.7 9.5E-17 2.1E-21 171.6 6.6 197 168-391 984-1211(1228)
346 PRK13409 putative ATPase RIL; 99.7 2E-16 4.4E-21 163.9 8.6 175 176-386 345-535 (590)
347 TIGR00956 3a01205 Pleiotropic 99.7 1.4E-16 3.1E-21 179.1 8.0 181 186-388 776-988 (1394)
348 PRK10636 putative ABC transpor 99.6 1.1E-16 2.4E-21 167.9 5.8 181 175-383 5-225 (638)
349 PRK11147 ABC transporter ATPas 99.6 2.9E-16 6.3E-21 165.0 8.8 174 176-384 324-518 (635)
350 TIGR02868 CydC thiol reductant 99.6 3.4E-16 7.3E-21 161.5 8.0 164 172-358 335-527 (529)
351 PRK11819 putative ABC transpor 99.6 4.8E-16 1E-20 161.1 8.8 173 176-383 329-522 (556)
352 smart00027 EH Eps15 homology d 99.6 3E-15 6.5E-20 118.6 11.3 88 8-95 1-88 (96)
353 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 5.6E-16 1.2E-20 160.4 8.7 173 176-383 327-520 (552)
354 cd00267 ABC_ATPase ABC (ATP-bi 99.6 2E-15 4.3E-20 130.7 10.3 144 177-381 5-157 (157)
355 KOG0056 Heavy metal exporter H 99.6 2.3E-16 5.1E-21 152.7 4.7 196 169-392 535-760 (790)
356 PLN03140 ABC transporter G fam 99.6 5.1E-16 1.1E-20 174.5 7.8 180 186-388 893-1105(1470)
357 PRK11147 ABC transporter ATPas 99.6 9.3E-16 2E-20 161.1 9.0 181 175-384 7-233 (635)
358 PTZ00265 multidrug resistance 99.6 4.5E-16 9.8E-21 175.5 7.1 184 172-381 383-656 (1466)
359 KOG0061 Transporter, ABC super 99.6 2.1E-15 4.5E-20 156.8 10.9 185 186-390 43-257 (613)
360 PLN03073 ABC transporter F fam 99.6 1.2E-15 2.7E-20 161.0 8.4 176 176-388 513-709 (718)
361 KOG0054 Multidrug resistance-a 99.6 1.2E-15 2.7E-20 166.5 8.1 194 172-392 1139-1361(1381)
362 TIGR00956 3a01205 Pleiotropic 99.6 7.7E-16 1.7E-20 173.3 6.6 185 186-391 74-298 (1394)
363 PRK13409 putative ATPase RIL; 99.6 1.5E-15 3.3E-20 157.5 8.1 183 177-379 79-286 (590)
364 PLN03232 ABC transporter C fam 99.6 1.3E-15 2.7E-20 173.1 7.9 184 174-390 617-825 (1495)
365 PLN03130 ABC transporter C fam 99.6 1.8E-15 3.8E-20 172.3 8.2 184 173-390 616-825 (1622)
366 COG4618 ArpD ABC-type protease 99.6 1.8E-15 3.9E-20 147.7 6.7 185 182-392 345-559 (580)
367 TIGR00957 MRP_assoc_pro multi 99.6 2.7E-15 5.9E-20 170.6 7.6 186 173-391 638-848 (1522)
368 PLN03140 ABC transporter G fam 99.6 1.9E-15 4E-20 170.0 6.1 184 186-391 178-425 (1470)
369 TIGR00436 era GTP-binding prot 99.6 2.8E-14 6.1E-19 134.6 12.9 124 199-368 2-125 (270)
370 cd03270 ABC_UvrA_I The excisio 99.6 5.6E-15 1.2E-19 135.7 7.2 89 283-386 119-226 (226)
371 COG0488 Uup ATPase components 99.6 7.2E-15 1.6E-19 149.2 8.4 183 174-383 6-229 (530)
372 KOG1954 Endocytosis/signaling 99.6 4.6E-15 1E-19 139.1 6.4 97 7-110 434-530 (532)
373 TIGR00954 3a01203 Peroxysomal 99.6 4.8E-15 1E-19 156.1 7.3 170 173-378 453-652 (659)
374 TIGR01271 CFTR_protein cystic 99.5 3.4E-15 7.4E-20 169.4 6.2 171 186-390 439-633 (1490)
375 COG1084 Predicted GTPase [Gene 99.5 1.2E-13 2.6E-18 128.8 14.2 128 198-372 169-302 (346)
376 PLN03073 ABC transporter F fam 99.5 6.5E-15 1.4E-19 155.6 5.8 184 175-387 181-425 (718)
377 PRK15494 era GTPase Era; Provi 99.5 8.1E-14 1.8E-18 135.4 12.0 149 171-365 18-175 (339)
378 PF01926 MMR_HSR1: 50S ribosom 99.5 8E-14 1.7E-18 114.3 10.1 116 199-359 1-116 (116)
379 PTZ00243 ABC transporter; Prov 99.5 1.3E-14 2.8E-19 165.0 7.1 172 186-391 673-868 (1560)
380 PRK00089 era GTPase Era; Revie 99.5 2.6E-13 5.6E-18 129.5 14.1 126 199-369 7-133 (292)
381 KOG0054 Multidrug resistance-a 99.5 1.7E-14 3.7E-19 157.7 6.5 171 187-391 535-729 (1381)
382 COG4778 PhnL ABC-type phosphon 99.5 4.7E-14 1E-18 119.6 7.1 169 186-377 24-225 (235)
383 COG4136 ABC-type uncharacteriz 99.5 1.1E-13 2.3E-18 115.2 7.4 164 176-358 7-193 (213)
384 KOG0059 Lipid exporter ABCA1 a 99.5 4.9E-14 1.1E-18 152.6 6.3 191 175-391 568-785 (885)
385 PRK12298 obgE GTPase CgtA; Rev 99.4 7.6E-13 1.7E-17 130.5 13.1 126 199-369 161-294 (390)
386 COG5265 ATM1 ABC-type transpor 99.4 5.3E-14 1.1E-18 134.7 4.6 192 172-391 263-484 (497)
387 TIGR03156 GTP_HflX GTP-binding 99.4 7.6E-13 1.7E-17 128.9 11.9 124 198-367 190-318 (351)
388 cd03271 ABC_UvrA_II The excisi 99.4 3.9E-14 8.5E-19 132.1 2.6 93 280-387 148-260 (261)
389 cd01898 Obg Obg subfamily. Th 99.4 8.1E-13 1.8E-17 115.1 10.4 123 200-369 3-133 (170)
390 PRK12299 obgE GTPase CgtA; Rev 99.4 1.7E-12 3.7E-17 125.6 12.1 124 199-367 160-288 (335)
391 PRK00093 GTP-binding protein D 99.4 2.1E-12 4.6E-17 130.1 12.6 127 198-368 174-302 (435)
392 COG0488 Uup ATPase components 99.4 3.4E-13 7.4E-18 137.0 6.7 170 176-379 326-511 (530)
393 PRK03003 GTP-binding protein D 99.4 2.2E-12 4.8E-17 131.0 12.6 119 198-364 39-160 (472)
394 KOG1423 Ras-like GTPase ERA [C 99.4 2.1E-12 4.6E-17 118.9 10.8 141 199-383 74-217 (379)
395 TIGR03594 GTPase_EngA ribosome 99.4 1.5E-12 3.3E-17 130.9 10.9 122 199-365 1-122 (429)
396 COG4138 BtuD ABC-type cobalami 99.4 2E-13 4.4E-18 116.3 3.6 179 196-393 24-221 (248)
397 cd01897 NOG NOG1 is a nucleola 99.4 5.6E-12 1.2E-16 109.7 11.9 124 199-369 2-132 (168)
398 PRK03003 GTP-binding protein D 99.4 3.9E-12 8.4E-17 129.3 12.4 124 198-365 212-337 (472)
399 KOG0065 Pleiotropic drug resis 99.4 4.9E-13 1.1E-17 143.6 5.9 185 184-389 802-1017(1391)
400 PF00350 Dynamin_N: Dynamin fa 99.4 1.7E-12 3.7E-17 113.3 8.0 152 200-360 1-168 (168)
401 cd01879 FeoB Ferrous iron tran 99.4 2.3E-12 5E-17 110.7 8.7 115 202-366 1-117 (158)
402 PF00005 ABC_tran: ABC transpo 99.4 1.4E-13 3E-18 116.1 1.0 115 189-326 1-132 (137)
403 cd04164 trmE TrmE (MnmE, ThdF, 99.4 4.7E-12 1E-16 108.3 10.5 119 198-367 2-124 (157)
404 cd04163 Era Era subfamily. Er 99.4 9.3E-12 2E-16 107.1 12.4 127 199-370 5-132 (168)
405 PRK11058 GTPase HflX; Provisio 99.4 3.7E-12 7.9E-17 127.0 11.0 122 198-364 198-323 (426)
406 COG4133 CcmA ABC-type transpor 99.4 1.5E-12 3.2E-17 112.5 6.9 149 186-358 15-187 (209)
407 PRK12296 obgE GTPase CgtA; Rev 99.3 8.2E-12 1.8E-16 125.6 12.9 125 198-368 160-302 (500)
408 TIGR02729 Obg_CgtA Obg family 99.3 9.1E-12 2E-16 120.3 12.7 126 199-369 159-292 (329)
409 TIGR03594 GTPase_EngA ribosome 99.3 7.8E-12 1.7E-16 125.7 12.2 119 199-363 174-296 (429)
410 TIGR03598 GTPase_YsxC ribosome 99.3 5E-11 1.1E-15 105.3 15.4 122 198-367 19-146 (179)
411 COG4615 PvdE ABC-type sideroph 99.3 4.2E-12 9.1E-17 120.8 8.8 179 175-384 326-528 (546)
412 PRK00093 GTP-binding protein D 99.3 7.9E-12 1.7E-16 125.9 11.3 121 198-364 2-123 (435)
413 cd03278 ABC_SMC_barmotin Barmo 99.3 2.2E-12 4.8E-17 115.8 6.4 161 190-378 14-189 (197)
414 cd01878 HflX HflX subfamily. 99.3 1.6E-11 3.4E-16 110.8 11.9 127 198-368 42-171 (204)
415 cd01894 EngA1 EngA1 subfamily. 99.3 8.9E-12 1.9E-16 106.7 9.6 123 201-368 1-123 (157)
416 COG0218 Predicted GTPase [Gene 99.3 2.8E-11 6.1E-16 106.3 12.6 122 196-368 23-153 (200)
417 cd01895 EngA2 EngA2 subfamily. 99.3 2.9E-11 6.3E-16 105.0 12.7 123 199-365 4-128 (174)
418 cd01881 Obg_like The Obg-like 99.3 8.4E-12 1.8E-16 109.2 9.1 120 202-369 1-139 (176)
419 PRK09554 feoB ferrous iron tra 99.3 1.1E-11 2.4E-16 131.7 11.6 117 199-365 5-127 (772)
420 PRK09518 bifunctional cytidyla 99.3 1.2E-11 2.6E-16 131.5 11.8 126 198-367 451-578 (712)
421 cd04159 Arl10_like Arl10-like 99.3 2.6E-11 5.7E-16 103.5 11.7 112 200-366 2-117 (159)
422 PRK12297 obgE GTPase CgtA; Rev 99.3 1.9E-11 4.2E-16 121.3 12.3 122 199-365 160-289 (424)
423 cd04171 SelB SelB subfamily. 99.3 3.1E-11 6.8E-16 104.2 12.0 115 199-366 2-120 (164)
424 cd04104 p47_IIGP_like p47 (47- 99.3 2.7E-11 5.8E-16 108.9 11.8 119 199-364 3-121 (197)
425 PRK09518 bifunctional cytidyla 99.3 1.4E-11 3.1E-16 131.0 11.4 122 199-365 277-398 (712)
426 cd04154 Arl2 Arl2 subfamily. 99.3 3.8E-11 8.2E-16 105.4 11.9 120 189-364 5-129 (173)
427 KOG0998 Synaptic vesicle prote 99.3 4.1E-12 8.9E-17 135.7 6.7 90 5-95 117-208 (847)
428 cd03279 ABC_sbcCD SbcCD and ot 99.3 6.4E-12 1.4E-16 114.4 6.6 74 293-381 120-210 (213)
429 cd00879 Sar1 Sar1 subfamily. 99.3 5.9E-11 1.3E-15 105.7 12.6 120 188-363 9-133 (190)
430 cd04161 Arl2l1_Arl13_like Arl2 99.3 4.3E-11 9.4E-16 104.5 11.5 111 199-365 1-115 (167)
431 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 3.5E-11 7.7E-16 104.4 10.7 116 198-364 1-116 (168)
432 cd01886 EF-G Elongation factor 99.2 3.8E-11 8.2E-16 113.0 10.9 66 287-364 65-130 (270)
433 KOG0927 Predicted transporter 99.2 1E-11 2.2E-16 122.5 6.6 162 188-383 405-585 (614)
434 cd00881 GTP_translation_factor 99.2 6.6E-11 1.4E-15 104.6 11.2 68 287-366 63-130 (189)
435 cd01861 Rab6 Rab6 subfamily. 99.2 4.6E-11 1E-15 103.0 9.6 114 199-363 2-118 (161)
436 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 1.1E-10 2.4E-15 101.7 11.8 112 200-366 2-115 (164)
437 cd04160 Arfrp1 Arfrp1 subfamil 99.2 5.1E-11 1.1E-15 103.5 9.7 68 287-365 51-122 (167)
438 cd04124 RabL2 RabL2 subfamily. 99.2 6.9E-11 1.5E-15 102.5 10.4 66 287-363 50-117 (161)
439 PRK04213 GTP-binding protein; 99.2 1.1E-10 2.3E-15 105.1 11.6 116 198-365 10-145 (201)
440 COG0370 FeoB Fe2+ transport sy 99.2 4.2E-11 9.1E-16 121.8 9.8 112 199-364 5-122 (653)
441 cd04145 M_R_Ras_like M-Ras/R-R 99.2 9.6E-11 2.1E-15 101.3 10.8 115 199-365 4-122 (164)
442 cd03240 ABC_Rad50 The catalyti 99.2 9.7E-11 2.1E-15 105.8 11.0 78 292-378 111-196 (204)
443 cd04157 Arl6 Arl6 subfamily. 99.2 1.5E-10 3.2E-15 99.9 11.6 113 199-365 1-119 (162)
444 cd04140 ARHI_like ARHI subfami 99.2 1.5E-10 3.3E-15 100.6 11.7 114 199-364 3-122 (165)
445 cd04136 Rap_like Rap-like subf 99.2 1.1E-10 2.5E-15 100.7 10.8 114 199-364 3-120 (163)
446 cd01866 Rab2 Rab2 subfamily. 99.2 1.4E-10 3E-15 101.3 11.1 115 199-364 6-123 (168)
447 smart00175 RAB Rab subfamily o 99.2 8.9E-11 1.9E-15 101.4 9.7 115 199-364 2-119 (164)
448 cd04155 Arl3 Arl3 subfamily. 99.2 2.2E-10 4.8E-15 100.1 12.3 112 198-365 15-130 (173)
449 cd01864 Rab19 Rab19 subfamily. 99.2 8.3E-11 1.8E-15 102.2 9.5 117 198-365 4-123 (165)
450 cd04149 Arf6 Arf6 subfamily. 99.2 2.2E-10 4.7E-15 100.2 12.0 110 199-364 11-124 (168)
451 PRK09866 hypothetical protein; 99.2 4.1E-10 8.9E-15 114.4 15.4 73 285-364 229-303 (741)
452 cd04113 Rab4 Rab4 subfamily. 99.2 1.6E-10 3.4E-15 99.8 11.0 116 199-365 2-120 (161)
453 smart00178 SAR Sar1p-like memb 99.2 2.2E-10 4.7E-15 101.8 12.0 110 198-363 18-131 (184)
454 cd04138 H_N_K_Ras_like H-Ras/N 99.2 2E-10 4.4E-15 98.8 11.5 114 199-364 3-120 (162)
455 cd04151 Arl1 Arl1 subfamily. 99.2 1.9E-10 4.1E-15 99.2 11.3 111 199-365 1-115 (158)
456 cd01868 Rab11_like Rab11-like. 99.2 1.6E-10 3.4E-15 100.3 10.7 115 199-364 5-122 (165)
457 cd01896 DRG The developmentall 99.2 1.6E-10 3.5E-15 106.5 11.3 88 199-332 2-89 (233)
458 cd03274 ABC_SMC4_euk Eukaryoti 99.2 3.9E-11 8.5E-16 109.0 7.1 79 283-378 110-203 (212)
459 cd04156 ARLTS1 ARLTS1 subfamil 99.2 2.1E-10 4.6E-15 98.8 11.4 111 199-364 1-115 (160)
460 cd04142 RRP22 RRP22 subfamily. 99.2 1.2E-10 2.5E-15 104.9 10.0 123 199-365 2-131 (198)
461 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 2.2E-10 4.8E-15 99.5 11.5 115 199-364 4-121 (166)
462 cd00880 Era_like Era (E. coli 99.2 2.9E-10 6.2E-15 96.6 11.9 123 202-369 1-123 (163)
463 PRK00454 engB GTP-binding prot 99.2 7.8E-10 1.7E-14 98.8 15.2 121 197-368 24-153 (196)
464 KOG1489 Predicted GTP-binding 99.2 8.6E-11 1.9E-15 109.0 9.0 122 199-365 198-327 (366)
465 cd00878 Arf_Arl Arf (ADP-ribos 99.2 2.8E-10 6E-15 98.0 11.6 111 199-365 1-115 (158)
466 cd00154 Rab Rab family. Rab G 99.2 1.6E-10 3.5E-15 98.5 10.1 114 199-363 2-118 (159)
467 cd04166 CysN_ATPS CysN_ATPS su 99.2 1.8E-10 3.8E-15 104.5 10.8 130 199-364 1-144 (208)
468 cd01867 Rab8_Rab10_Rab13_like 99.2 2.9E-10 6.3E-15 99.1 11.5 115 199-364 5-122 (167)
469 cd01891 TypA_BipA TypA (tyrosi 99.2 1.9E-10 4.1E-15 103.0 10.5 66 287-364 66-131 (194)
470 cd04119 RJL RJL (RabJ-Like) su 99.2 1.6E-10 3.4E-15 100.1 9.7 114 199-363 2-123 (168)
471 cd04168 TetM_like Tet(M)-like 99.2 2.2E-10 4.7E-15 105.9 11.1 66 287-364 65-130 (237)
472 cd01860 Rab5_related Rab5-rela 99.2 2E-10 4.4E-15 99.2 10.3 114 199-363 3-119 (163)
473 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 3.4E-10 7.4E-15 99.5 11.9 111 198-364 16-130 (174)
474 cd04150 Arf1_5_like Arf1-Arf5- 99.2 3.7E-10 8.1E-15 97.8 12.0 110 199-364 2-115 (159)
475 cd01865 Rab3 Rab3 subfamily. 99.2 2.8E-10 6E-15 99.0 11.2 116 199-365 3-121 (165)
476 smart00173 RAS Ras subfamily o 99.2 2.6E-10 5.7E-15 98.7 11.0 114 199-364 2-119 (164)
477 cd04127 Rab27A Rab27a subfamil 99.2 2.4E-10 5.1E-15 100.7 10.7 67 287-364 64-134 (180)
478 cd04115 Rab33B_Rab33A Rab33B/R 99.2 1.9E-10 4.1E-15 100.6 10.0 117 199-365 4-124 (170)
479 cd03272 ABC_SMC3_euk Eukaryoti 99.2 5.5E-11 1.2E-15 110.3 6.9 69 293-378 155-234 (243)
480 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 3.5E-10 7.5E-15 101.9 11.8 114 199-363 2-123 (201)
481 cd03273 ABC_SMC2_euk Eukaryoti 99.2 3.9E-11 8.5E-16 112.0 5.7 69 293-377 163-241 (251)
482 cd04109 Rab28 Rab28 subfamily. 99.1 4E-10 8.7E-15 102.6 12.0 116 199-364 2-123 (215)
483 cd04175 Rap1 Rap1 subgroup. T 99.1 3.6E-10 7.9E-15 97.9 11.2 114 199-364 3-120 (164)
484 cd04169 RF3 RF3 subfamily. Pe 99.1 1.8E-10 3.9E-15 108.3 9.9 66 287-364 72-137 (267)
485 COG2262 HflX GTPases [General 99.1 2.2E-10 4.8E-15 110.2 10.5 122 198-367 193-321 (411)
486 cd01884 EF_Tu EF-Tu subfamily. 99.1 4.3E-10 9.4E-15 100.8 11.7 128 199-365 4-133 (195)
487 cd04112 Rab26 Rab26 subfamily. 99.1 2.1E-10 4.6E-15 102.4 9.5 114 199-363 2-119 (191)
488 smart00177 ARF ARF-like small 99.1 4.9E-10 1.1E-14 98.6 11.7 111 198-364 14-128 (175)
489 cd01890 LepA LepA subfamily. 99.1 3.8E-10 8.2E-15 99.2 10.9 66 287-364 68-133 (179)
490 cd01862 Rab7 Rab7 subfamily. 99.1 5E-10 1.1E-14 97.6 11.3 115 199-364 2-123 (172)
491 COG0536 Obg Predicted GTPase [ 99.1 4.3E-10 9.3E-15 105.7 11.4 128 199-371 161-297 (369)
492 cd04158 ARD1 ARD1 subfamily. 99.1 5.6E-10 1.2E-14 97.6 11.6 110 199-364 1-114 (169)
493 cd04120 Rab12 Rab12 subfamily. 99.1 2.4E-10 5.1E-15 103.1 9.4 117 199-366 2-121 (202)
494 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.1 7E-10 1.5E-14 98.4 12.3 114 199-364 5-123 (183)
495 cd04118 Rab24 Rab24 subfamily. 99.1 2.9E-10 6.4E-15 101.4 9.9 115 199-364 2-119 (193)
496 PLN00223 ADP-ribosylation fact 99.1 6.1E-10 1.3E-14 98.7 11.9 112 199-366 19-134 (181)
497 cd04176 Rap2 Rap2 subgroup. T 99.1 4.9E-10 1.1E-14 97.0 10.9 113 199-363 3-119 (163)
498 PF00009 GTP_EFTU: Elongation 99.1 6.5E-11 1.4E-15 105.5 5.4 66 286-363 70-135 (188)
499 cd04106 Rab23_lke Rab23-like s 99.1 2.5E-10 5.5E-15 98.5 8.8 117 199-364 2-120 (162)
500 KOG0998 Synaptic vesicle prote 99.1 4.9E-11 1.1E-15 127.5 5.2 85 9-93 3-87 (847)
No 1
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-32 Score=254.46 Aligned_cols=239 Identities=70% Similarity=1.173 Sum_probs=229.9
Q ss_pred hhhhHHHHHHHHHHHhcCCceeeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccce
Q 016165 156 SVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR 235 (394)
Q Consensus 156 ~~e~~id~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r 235 (394)
-...+.+.+++.|.+++.++...|+|+++++.++.|.+|..+|.|.++|+-..||||++|.|+..+.|+..+++.|+|.+
T Consensus 17 ~~~tv~~glkrlY~~kl~PLE~~Yrf~df~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~ 96 (532)
T KOG1954|consen 17 VLQTVSEGLKRLYKQKLLPLEELYRFHDFHSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDR 96 (532)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHhhhhcccccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcce
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHH
Q 016165 236 FVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 236 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iar 315 (394)
..+.++|+.+..++|.+.+++...+|.|++.+++.|.+++.|.+.++.+|+.+.++||||++|||+||+.|.+.|.+...
T Consensus 97 Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~ 176 (532)
T KOG1954|consen 97 FIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLE 176 (532)
T ss_pred eEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCccceeecC
Q 016165 316 WFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIG 394 (394)
Q Consensus 316 al~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~v~~~ 394 (394)
.++..+|.||+++|+...++..++.++|..|+.+...+-+|+||.|..+.+++.++...++|..|+++.++++..||+|
T Consensus 177 WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~rvYig 255 (532)
T KOG1954|consen 177 WFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSRVYIG 255 (532)
T ss_pred HHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcceeEEee
Confidence 9999999999999999889999999999999988888999999999999999999999999999999999999999985
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=5.8e-29 Score=217.98 Aligned_cols=191 Identities=22% Similarity=0.314 Sum_probs=157.8
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------- 246 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------- 246 (394)
++++.|++ ..+|+++++++.. +++|+||+||||||||+||.+++. |..+. |.+++.+..
T Consensus 7 ~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--------~~~G~--I~i~g~~~~~~~~~~~ 74 (240)
T COG1126 7 NLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--------PDSGS--ITVDGEDVGDKKDILK 74 (240)
T ss_pred eeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--------CCCce--EEECCEeccchhhHHH
Confidence 45668888 6799999999887 999999999999999999999993 44444 233332211
Q ss_pred ccCCceeeeccCCCCCccccccccc--------chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 247 SIPGNTVAVQADMPFSGLTTFGTAF--------LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
....+..++|....|+.++..+|.. +++.+.++.+.++|+++++.| .|..+| ||+|||+ |
T Consensus 75 ~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVA-------I 147 (240)
T COG1126 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVA-------I 147 (240)
T ss_pred HHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHH-------H
Confidence 1124456778877888888887764 234477888999999999988 899999 8999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
||+++.+|+++|+ .||+.- ..++.++++.|.+.|.++++|+ |+...+.++ |++++|+.|+++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPEl---v~EVL~vm~~LA~eGmTMivVT-----HEM~FAr~VadrviFmd~G~iie~g~ 219 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPEL---VGEVLDVMKDLAEEGMTMIIVT-----HEMGFAREVADRVIFMDQGKIIEEGP 219 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHH---HHHHHHHHHHHHHcCCeEEEEe-----chhHHHHHhhheEEEeeCCEEEEecC
Confidence 9999999999999 788765 8889999999999999999999 888888888 9999999999999888
Q ss_pred cceeec
Q 016165 388 VVRVYI 393 (394)
Q Consensus 388 ~~~v~~ 393 (394)
+.++|.
T Consensus 220 p~~~f~ 225 (240)
T COG1126 220 PEEFFD 225 (240)
T ss_pred HHHHhc
Confidence 877764
No 3
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.95 E-value=8.6e-31 Score=253.62 Aligned_cols=248 Identities=21% Similarity=0.286 Sum_probs=183.4
Q ss_pred ccchHHHHHHHHHcCCCHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHHHHhcCCCCCccCCCCccCCCCCCCCC
Q 016165 33 RITGNDATKFFALSNLSRQDLKQVWAIADA-----KRQGYLGYREFIAAMQLISLVQDGHQVTHDLWNSDVDFQNLKPPA 107 (394)
Q Consensus 33 ~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~-----~~~g~l~~~ef~~a~~Li~~~~~g~~~~~~l~~~~~~~~~~~lp~ 107 (394)
.-||++++++-++-| +.++..|..++-. -..|.++++.| .|+++||.+
T Consensus 74 SFTGEDvvEi~~HGg--~~v~~~iL~~~l~~GaR~AepGEFs~RAF-------------------------LNgK~DLtq 126 (454)
T COG0486 74 SFTGEDVVEIQCHGG--PVVVNLILELLLKLGARLAEPGEFSKRAF-------------------------LNGKLDLTQ 126 (454)
T ss_pred CcccccEEEEEcCCC--HHHHHHHHHHHHHcCCeecCCCcchHHHH-------------------------hcCCccHHH
Confidence 357788777777755 3344444444322 23455555544 569999999
Q ss_pred ccccchhhhhcccCCCCCCCC-CCCCCCCCCCccccccccccCCcc--cchhhhhHHHHHH--------HHHHHhcCCce
Q 016165 108 MEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKI--SMSSVTSIIDGLK--------RLYIQKLKPLE 176 (394)
Q Consensus 108 ~~~l~~~i~a~t~~~~~~a~~-~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~id~~~--------~~~~~~~~~l~ 176 (394)
+|++.|+|.|+|+.+++.|++ ++|.++. .+.+| |+.+ .++.+|+.||..+ ..+...++.+.
T Consensus 127 AEai~dLI~A~te~a~r~A~~~l~G~ls~---~i~~l-----r~~li~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~ 198 (454)
T COG0486 127 AEAIADLIDAKTEQAARIALRQLQGALSQ---LINEL-----REALLELLAQVEANIDFPEEDIEELVLEKIREKLEELI 198 (454)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcHHH---HHHHH-----HHHHHHHHHHheEeCCCCcccccchhHHHHHHHHHHHH
Confidence 999999999999999999999 9997666 58999 8888 8999999999433 12222222221
Q ss_pred eeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeec
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ 256 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~ 256 (394)
. .........-++.-++.+..++|+|+||||||||||+|++.++ ++|++.|+|||+.+ +
T Consensus 199 ~--~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDvi-----------------e 257 (454)
T COG0486 199 A--ELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVI-----------------E 257 (454)
T ss_pred H--HHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceE-----------------E
Confidence 1 1111111122333456667999999999999999999999999 99999999999987 3
Q ss_pred cCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc----hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCC
Q 016165 257 ADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS----GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK 332 (394)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls----Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~ 332 (394)
+.+.++|+ .+.+.||+|++. =|+.+|+ -++..+.+||++|+++|++.
T Consensus 258 e~i~i~G~----------------------pv~l~DTAGiRet~d~VE~iGIe-------Rs~~~i~~ADlvL~v~D~~~ 308 (454)
T COG0486 258 EDINLNGI----------------------PVRLVDTAGIRETDDVVERIGIE-------RAKKAIEEADLVLFVLDASQ 308 (454)
T ss_pred EEEEECCE----------------------EEEEEecCCcccCccHHHHHHHH-------HHHHHHHhCCEEEEEEeCCC
Confidence 45556676 889999999998 2888888 66789999999999999987
Q ss_pred CCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHH
Q 016165 333 LDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQ 367 (394)
Q Consensus 333 ~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~ 367 (394)
. .......++. +...++++++|.||.|+.....
T Consensus 309 ~-~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 309 P-LDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred C-CchhhHHHHH-hcccCCCEEEEEechhcccccc
Confidence 2 3455556666 4456789999999999976544
No 4
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.94 E-value=6.6e-27 Score=186.09 Aligned_cols=95 Identities=34% Similarity=0.573 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcC--
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDG-- 86 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g-- 86 (394)
..||++|+++|+++|..+|+ ++|+|+|++|++||++||||.++|++||+|||.+++|+||++||++|||||.++++|
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~ 80 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNG 80 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999997 689999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCccCCCCccCCCCCCCCCccc
Q 016165 87 HQVTHDLWNSDVDFQNLKPPAMEG 110 (394)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~lp~~~~ 110 (394)
.++|.+||+ .+-+|+...
T Consensus 81 ~~lP~~LP~------~L~p~s~~~ 98 (104)
T PF12763_consen 81 KPLPSSLPP------SLIPPSKRP 98 (104)
T ss_dssp S---SSSSG------GGSSSCG--
T ss_pred CCCchhcCH------HHCCCCccc
Confidence 599999987 666666554
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=2e-26 Score=211.20 Aligned_cols=192 Identities=22% Similarity=0.304 Sum_probs=148.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC---
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP--- 249 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~--- 249 (394)
-++++.|++ +.++++++|+++. +++|+||||||||||+++|+|... |..+. +.+++++...++
T Consensus 6 ~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--------p~~G~--V~l~g~~i~~~~~ke 73 (258)
T COG1120 6 ENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--------PKSGE--VLLDGKDIASLSPKE 73 (258)
T ss_pred EEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--------CCCCE--EEECCCchhhcCHHH
Confidence 466788987 7899999999987 999999999999999999999984 33333 334444433322
Q ss_pred ---CceeeeccCCCCCcccccccc----------c-chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 250 ---GNTVAVQADMPFSGLTTFGTA----------F-LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 250 ---~~~~~~~~~~~~~g~~~~~~~----------~-~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
...+++|......+++.++.. + ....++++.+.+.++.+++.+ ....+| ||+||+.
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~----- 148 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVL----- 148 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHH-----
Confidence 233344443333333322221 1 123456667888888888866 667788 8999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+||+++++|+++|+ .+|..+ +.+++++++++.+ ++.++|+|+ ||.+.+.++ |+++++++|+++
T Consensus 149 --iArALaQ~~~iLLLDEPTs~LDi~~---Q~evl~ll~~l~~~~~~tvv~vl-----HDlN~A~ryad~~i~lk~G~i~ 218 (258)
T COG1120 149 --IARALAQETPILLLDEPTSHLDIAH---QIEVLELLRDLNREKGLTVVMVL-----HDLNLAARYADHLILLKDGKIV 218 (258)
T ss_pred --HHHHHhcCCCEEEeCCCccccCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHHhCCEEEEEECCeEE
Confidence 99999999999999 899988 9999999999984 588999999 899999888 999999999999
Q ss_pred ecCccceeec
Q 016165 384 NTPEVVRVYI 393 (394)
Q Consensus 384 ~~~~~~~v~~ 393 (394)
+.|.+.++++
T Consensus 219 a~G~p~evlT 228 (258)
T COG1120 219 AQGTPEEVLT 228 (258)
T ss_pred eecCcchhcC
Confidence 9999988875
No 6
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.7e-26 Score=211.06 Aligned_cols=183 Identities=21% Similarity=0.313 Sum_probs=151.6
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC---------Cceee
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP---------GNTVA 254 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~---------~~~~~ 254 (394)
..+++++++++.. +++|+|.+|||||||++++.+++ .|..++ +.+++++...++ ..+..
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le--------~PtsG~--v~v~G~di~~l~~~~Lr~~R~~IGMI 88 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE--------RPTSGS--VFVDGQDLTALSEAELRQLRQKIGMI 88 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC--------CCCCce--EEEcCEecccCChHHHHHHHhhccEE
Confidence 3599999999987 99999999999999999999999 455555 444554433332 34445
Q ss_pred eccCCCCCccccccccc-------chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCC
Q 016165 255 VQADMPFSGLTTFGTAF-------LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (394)
Q Consensus 255 ~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~d 322 (394)
+|....+...+.++|.. +++.+..+++.++++.+++.| +|..+| ||+|||+ ||||++.+|+
T Consensus 89 FQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVa-------IARALa~~P~ 161 (339)
T COG1135 89 FQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVA-------IARALANNPK 161 (339)
T ss_pred eccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHH-------HHHHHhcCCC
Confidence 66666666666666653 335578899999999999998 899999 8999999 9999999999
Q ss_pred EEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceeec
Q 016165 323 LILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 323 llLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~~ 393 (394)
++|. .+|+.. .+.++++|+.+.++ |.++++|+ |.++.+.++ +++.+|+.|+++..|++.++|.
T Consensus 162 iLL~DEaTSALDP~T---T~sIL~LL~~In~~lglTIvlIT-----HEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 162 ILLCDEATSALDPET---TQSILELLKDINRELGLTIVLIT-----HEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred EEEecCccccCChHH---HHHHHHHHHHHHHHcCCEEEEEe-----chHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 9999 889877 89999999999764 88888888 888899887 9999999999999999999884
No 7
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=8.6e-26 Score=206.04 Aligned_cols=201 Identities=20% Similarity=0.234 Sum_probs=140.7
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCC--C-CCcCCCcccc---eeEEEEecCccc
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--G-AHIGPEPTTD---RFVVVMSGVDDR 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~--~-~~vs~~p~t~---r~~i~~~~~~~~ 246 (394)
-++++.|++. .+++|++|++.. +++|+||||||||||+++++|...| | ..+.+.+.+. +..+.|..|...
T Consensus 8 ~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~ 85 (254)
T COG1121 8 ENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSS 85 (254)
T ss_pred eeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccc
Confidence 4566788863 599999999887 9999999999999999999998854 1 1111121111 123444444331
Q ss_pred ccCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcC
Q 016165 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (394)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~ 321 (394)
.-......+.+.+........+........+++.+.++|+.+++.| ..|.+| ||+|||. +|||++++|
T Consensus 86 ~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~-------lARAL~~~p 158 (254)
T COG1121 86 VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVL-------LARALAQNP 158 (254)
T ss_pred cCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHH-------HHHHhccCC
Confidence 1111111111111111111111111223456788999999999987 789999 8999999 999999999
Q ss_pred CEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceeec
Q 016165 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 322 dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~~ 393 (394)
|++|+ ++|+.. +..+.++|++++++|++|++|+ ||...+..+ |+++.+ +++++..|++.++++
T Consensus 159 ~lllLDEP~~gvD~~~---~~~i~~lL~~l~~eg~tIl~vt-----HDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 159 DLLLLDEPFTGVDVAG---QKEIYDLLKELRQEGKTVLMVT-----HDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred CEEEecCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999 899887 8899999999999899999998 888888887 776555 467777787777764
No 8
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.3e-24 Score=188.44 Aligned_cols=194 Identities=22% Similarity=0.327 Sum_probs=150.3
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----- 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----- 248 (394)
++.+.|++ +.+|+++++.+.. ++|++||+||||||||++|..... .+.....+++ +.+++++.-..
T Consensus 12 ~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~--v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 12 DLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGE--VLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEE--EEECCeeccCCCCCHH
Confidence 34557887 7799999999988 999999999999999999999873 3333333333 45555553221
Q ss_pred ---CCceeeeccCCCCCcccccccccch-h------hhhhcCCccccccceeec--------CCCCCc-hhhhhhhcccC
Q 016165 249 ---PGNTVAVQADMPFSGLTTFGTAFLS-K------FECSQMPHSLLEHITLVD--------TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 249 ---~~~~~~~~~~~~~~g~~~~~~~~~~-~------~~~~~~~~~~l~~~~l~D--------t~g~ls-Ge~qrv~~~~~ 309 (394)
..+..++|.+.+|+ .+.+.|..+. + .+..+.+...|+...+|| .+.-+| ||+||+.
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc---- 159 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC---- 159 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH----
Confidence 23455778888777 5666665221 1 234455666777777776 566688 8999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
|||+++.+|+++|+ .+|+.+ ...+.+++.+|++ .-+|++|+ |+++++.++ |+..++..|+++
T Consensus 160 ---IARalAv~PeVlLmDEPtSALDPIs---T~kIEeLi~eLk~-~yTIviVT-----HnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 160 ---IARALAVKPEVLLMDEPTSALDPIS---TLKIEELITELKK-KYTIVIVT-----HNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred ---HHHHHhcCCcEEEecCcccccCchh---HHHHHHHHHHHHh-ccEEEEEe-----CCHHHHHHHhHhhhhhcccEEE
Confidence 99999999999999 899987 7888999999984 57888888 999999998 999999999999
Q ss_pred ecCccceeec
Q 016165 384 NTPEVVRVYI 393 (394)
Q Consensus 384 ~~~~~~~v~~ 393 (394)
+.++...+|+
T Consensus 228 E~g~T~~iF~ 237 (253)
T COG1117 228 EFGPTDKIFT 237 (253)
T ss_pred EEcCHHhhhc
Confidence 9999988886
No 9
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=4.8e-25 Score=197.38 Aligned_cols=192 Identities=21% Similarity=0.305 Sum_probs=157.6
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC--
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP-- 249 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~-- 249 (394)
.-++++.|++ ..+++++++++.. +++++||+||||||+|++|.++. .|+.+. +.+++++...++
T Consensus 4 ~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi--------ept~G~--I~i~g~~i~~~d~~ 71 (309)
T COG1125 4 FENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI--------EPTSGE--ILIDGEDISDLDPV 71 (309)
T ss_pred eeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc--------CCCCce--EEECCeecccCCHH
Confidence 3466778887 7799999999987 99999999999999999999999 566666 555666665544
Q ss_pred ----CceeeeccCCCCCcccccccc-c------chhhhhhcCCccccccceeec------CCCCCc-hhhhhhhcccChH
Q 016165 250 ----GNTVAVQADMPFSGLTTFGTA-F------LSKFECSQMPHSLLEHITLVD------TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 250 ----~~~~~~~~~~~~~g~~~~~~~-~------~~~~~~~~~~~~~l~~~~l~D------t~g~ls-Ge~qrv~~~~~~~ 311 (394)
...|+.|..-.|+.++..+|+ . |.+.+..+++.++++.+++.. .|..+| ||+|||.
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVG------ 145 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG------ 145 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHH------
Confidence 566777888888888888876 3 344567788899999998852 799999 8999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
++||++.+|+++|+ .+|+-. ..++.+.+..++++ ++++++|+ ||.+++... |++.+|+.|+++.
T Consensus 146 -v~RALAadP~ilLMDEPFgALDpI~---R~~lQ~e~~~lq~~l~kTivfVT-----HDidEA~kLadri~vm~~G~i~Q 216 (309)
T COG1125 146 -VARALAADPPILLMDEPFGALDPIT---RKQLQEEIKELQKELGKTIVFVT-----HDIDEALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred -HHHHHhcCCCeEeecCCccccChhh---HHHHHHHHHHHHHHhCCEEEEEe-----cCHHHHHhhhceEEEecCCeEEE
Confidence 99999999999999 899876 66776777777654 88999999 888888887 9999999999998
Q ss_pred cCccceee
Q 016165 385 TPEVVRVY 392 (394)
Q Consensus 385 ~~~~~~v~ 392 (394)
.+++.+++
T Consensus 217 ~~~P~~il 224 (309)
T COG1125 217 YDTPDEIL 224 (309)
T ss_pred eCCHHHHH
Confidence 87766554
No 10
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.91 E-value=1.3e-24 Score=186.58 Aligned_cols=186 Identities=21% Similarity=0.289 Sum_probs=151.8
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|.+. ..+|+|++|++++ ++-++||+|||||||+++|++.+. |+.+. +.+.+.+...+
T Consensus 5 ~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--------pt~G~--i~~~~~dl~~l~~~~ 73 (223)
T COG2884 5 ENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--------PTRGK--ILVNGHDLSRLKGRE 73 (223)
T ss_pred hhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--------CCCce--EEECCeecccccccc
Confidence 4566788876 6799999999988 999999999999999999999994 44444 33344433222
Q ss_pred -C----CceeeeccCCCCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 249 -P----GNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 249 -~----~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
| ...+++|+.-.+...+.++|..+ ...+..+++.+.|+.+++.+ .|..+| ||+||++
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRva------ 147 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVA------ 147 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHH------
Confidence 1 34567787777778888887632 23467888999999999987 789999 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
||||++.+|+++|. ++|+.. ..+++.+++++...|.+|++.+ |+.+.+..+ .+++.+.+|+++..
T Consensus 148 -IARAiV~~P~vLlADEPTGNLDp~~---s~~im~lfeeinr~GtTVl~AT-----Hd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 148 -IARAIVNQPAVLLADEPTGNLDPDL---SWEIMRLFEEINRLGTTVLMAT-----HDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred -HHHHHccCCCeEeecCCCCCCChHH---HHHHHHHHHHHhhcCcEEEEEe-----ccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999999999 899876 8899999999999999999999 888888777 78899999999865
Q ss_pred C
Q 016165 386 P 386 (394)
Q Consensus 386 ~ 386 (394)
.
T Consensus 219 ~ 219 (223)
T COG2884 219 E 219 (223)
T ss_pred c
Confidence 3
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=5.7e-25 Score=210.18 Aligned_cols=192 Identities=21% Similarity=0.306 Sum_probs=153.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC---
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP--- 249 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~--- 249 (394)
-++++.|++ ..+++|+++++.+ +++++|||||||||||++|+|.+ .|..++ |.+.+++....|
T Consensus 9 ~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe--------~p~~G~--I~l~G~~i~~lpp~k 76 (352)
T COG3842 9 RNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE--------QPSSGE--ILLDGEDITDVPPEK 76 (352)
T ss_pred EeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCce--EEECCEECCCCChhh
Confidence 345668887 6799999999988 99999999999999999999999 455554 445555554444
Q ss_pred -CceeeeccCCCCCcccccccc-cch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 250 -GNTVAVQADMPFSGLTTFGTA-FLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 250 -~~~~~~~~~~~~~g~~~~~~~-~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
++..++|..-.|+.++..+|+ |-. ..+..+++.++++.+++.+ .|..+| ||+|||+ +||
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVA-------LAR 149 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVA-------LAR 149 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHH-------HHH
Confidence 455677888888888888776 311 1245678899999999876 789999 8999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
+++.+|+++|+ .+|..- ..+...-++.+.+ .|.+.|+|+ ||.+++..+ |++.+|++|+|...|.+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kL---R~~mr~Elk~lq~~~giT~i~VT-----HDqeEAl~msDrI~Vm~~G~I~Q~gtP 221 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKL---REQMRKELKELQRELGITFVYVT-----HDQEEALAMSDRIAVMNDGRIEQVGTP 221 (352)
T ss_pred HhhcCcchhhhcCcccchhHHH---HHHHHHHHHHHHHhcCCeEEEEE-----CCHHHHhhhccceEEccCCceeecCCH
Confidence 99999999999 666643 5556556666654 488999999 999999888 99999999999999999
Q ss_pred ceeec
Q 016165 389 VRVYI 393 (394)
Q Consensus 389 ~~v~~ 393 (394)
.++|.
T Consensus 222 ~eiY~ 226 (352)
T COG3842 222 EEIYE 226 (352)
T ss_pred HHHhh
Confidence 98885
No 12
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=2.8e-25 Score=198.72 Aligned_cols=189 Identities=24% Similarity=0.419 Sum_probs=154.3
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP---- 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~---- 249 (394)
+++++|++ -.+++|++|++.+ +++|+||||||||||+|+|+|.+ .|..++ +.+.+++....+
T Consensus 9 ~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~--------~P~~G~--v~~~G~~it~l~p~~i 76 (250)
T COG0411 9 GLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY--------KPSSGT--VIFRGRDITGLPPHRI 76 (250)
T ss_pred cceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc--------cCCCce--EEECCcccCCCCHHHH
Confidence 45668888 5599999999988 99999999999999999999999 455555 555666544333
Q ss_pred ---CceeeeccCCCCCcccccccccch-------------------hhhhhcCCccccccceeec----CCCCCc-hhhh
Q 016165 250 ---GNTVAVQADMPFSGLTTFGTAFLS-------------------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQ 302 (394)
Q Consensus 250 ---~~~~~~~~~~~~~g~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~q 302 (394)
|..+.+|..-.|.+++..+|.... ..+..+.+.++|+.+++.+ .+|.+| |+++
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 777888888889998887776422 1246677888999999876 678889 9999
Q ss_pred hhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHh
Q 016165 303 RTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGAL 375 (394)
Q Consensus 303 rv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~ 375 (394)
+++ |||+++.+|+++|+ ++.+.. ..++.++|+++++. +.++++|- |+++.+..+ |+++
T Consensus 157 ~LE-------IArALa~~P~lLLLDEPaAGln~~e---~~~l~~~i~~i~~~~g~tillIE-----HdM~~Vm~l~dri~ 221 (250)
T COG0411 157 RLE-------IARALATQPKLLLLDEPAAGLNPEE---TEELAELIRELRDRGGVTILLIE-----HDMKLVMGLADRIV 221 (250)
T ss_pred HHH-------HHHHHhcCCCEEEecCccCCCCHHH---HHHHHHHHHHHHhcCCcEEEEEE-----eccHHHhhhccEEE
Confidence 999 99999999999999 666655 77888999999874 68888888 778888887 9999
Q ss_pred hhccceeeecCcccee
Q 016165 376 MWSLGKVLNTPEVVRV 391 (394)
Q Consensus 376 ~~~~G~i~~~~~~~~v 391 (394)
++..|++++.|++.+|
T Consensus 222 Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 222 VLNYGEVIAEGTPEEV 237 (250)
T ss_pred eccCCcCcccCCHHHH
Confidence 9999999988877665
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.5e-24 Score=195.49 Aligned_cols=178 Identities=23% Similarity=0.322 Sum_probs=136.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcc-cccCCce
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD-RSIPGNT 252 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~-~~~~~~~ 252 (394)
++++.|++ ..+++|+++++.. +|+|+||+|||||||+|+++|+.. |..+. +.+.++.. ..-+...
T Consensus 8 ~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--------p~~G~--V~~~g~~v~~p~~~~~ 75 (248)
T COG1116 8 GVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--------PTSGE--VLLDGRPVTGPGPDIG 75 (248)
T ss_pred eeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCcccCCCCCCEE
Confidence 34567777 6799999999987 999999999999999999999994 44444 33334332 1223455
Q ss_pred eeeccCCCCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhc
Q 016165 253 VAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
+++|....++..+..+|..+ .+.+..+.+.++++.+++.+ .|..+| ||+|||+ |||+++.+
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVa-------iARAL~~~ 148 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVA-------IARALATR 148 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHH-------HHHHHhcC
Confidence 67777777777777776632 23345667899999999976 899999 8999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHHHH-HhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVITS-LRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l~~-l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
|+++|+ .+|+.+ .....+.+.. +.+.++++++|+ ||.+++... |++++|.++
T Consensus 149 P~lLLlDEPFgALDalT---R~~lq~~l~~lw~~~~~TvllVT-----Hdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 149 PKLLLLDEPFGALDALT---REELQDELLRLWEETRKTVLLVT-----HDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCEEEEcCCcchhhHHH---HHHHHHHHHHHHHhhCCEEEEEe-----CCHHHHHhhhCEEEEecCC
Confidence 999999 788865 5555554444 455678999999 888888777 999999883
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.8e-24 Score=192.09 Aligned_cols=199 Identities=18% Similarity=0.237 Sum_probs=141.1
Q ss_pred ceeeeee-cCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCC--CCC------cCCCc----ccceeEEE
Q 016165 175 LEVTYRF-NDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH------IGPEP----TTDRFVVV 239 (394)
Q Consensus 175 l~~~~~~-~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~--~~~------vs~~p----~t~r~~i~ 239 (394)
-++++.| ++ +.+|+++++++.. +|+|+|++||||||||++|.|...| |.+ +...+ ..-|..+.
T Consensus 7 ~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG 84 (258)
T COG3638 7 KNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG 84 (258)
T ss_pred eeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce
Confidence 3456677 44 7799999999987 9999999999999999999997742 000 00000 00122344
Q ss_pred EecCcccccCCceeeeccCCCCCccc-cccccc-chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 240 MSGVDDRSIPGNTVAVQADMPFSGLT-TFGTAF-LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
+.+|++..++..++..+.-...-+.. .+...| +...++...+.+.|+++++.| .++.+| ||+|||+
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVa------- 157 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVA------- 157 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHH-------
Confidence 44555544444333222111111111 111111 223467778889999999998 678899 8999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
|||+++++|++||. .+|+.. .+.++++|+++.++ |.++++.+ |..+.+.++ ++++-++.|+++.+
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~---a~~Vm~~l~~in~~~g~Tvi~nL-----H~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPES---AKKVMDILKDINQEDGITVIVNL-----HQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhh---HHHHHHHHHHHHHHcCCEEEEEe-----chHHHHHHHHhhheEecCCcEEEe
Confidence 99999999999999 899987 89999999999764 78888888 666677777 99999999999998
Q ss_pred Cccce
Q 016165 386 PEVVR 390 (394)
Q Consensus 386 ~~~~~ 390 (394)
|...+
T Consensus 230 g~~~e 234 (258)
T COG3638 230 GPASE 234 (258)
T ss_pred CChhh
Confidence 87654
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=2.8e-24 Score=193.33 Aligned_cols=186 Identities=21% Similarity=0.266 Sum_probs=141.1
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc--
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-- 248 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-- 248 (394)
+.+.+.|..++....++++++|+++. +|+|+||+|||||||||+|.|.+. |+.+. +.+.+.+....
T Consensus 5 ~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--------pt~G~--v~i~g~d~~~l~~ 74 (226)
T COG1136 5 KNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--------PTSGE--VLINGKDLTKLSE 74 (226)
T ss_pred eeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--------CCCce--EEECCEEcCcCCH
Confidence 34444333333224699999999988 999999999999999999999994 43333 22333222211
Q ss_pred --------CCceeeeccCCCCCcccccccccchh----h---hhhcCCccccccceeec-----CCCCCc-hhhhhhhcc
Q 016165 249 --------PGNTVAVQADMPFSGLTTFGTAFLSK----F---ECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 249 --------~~~~~~~~~~~~~~g~~~~~~~~~~~----~---~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~ 307 (394)
....+++|....++.++..+|..++- . ...+.+..+++.+++.| .|..+| ||+|||+
T Consensus 75 ~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA-- 152 (226)
T COG1136 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA-- 152 (226)
T ss_pred HHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH--
Confidence 13456777777778888888775321 1 34555677888888874 699999 8999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
||||++.+|++||. .+|..+ .+++++++..+.++ ++++++|+ ||+..+..+|+++.+++|+
T Consensus 153 -----IARAL~~~P~iilADEPTgnLD~~t---~~~V~~ll~~~~~~~g~tii~VT-----Hd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 153 -----IARALINNPKIILADEPTGNLDSKT---AKEVLELLRELNKERGKTIIMVT-----HDPELAKYADRVIELKDGK 219 (226)
T ss_pred -----HHHHHhcCCCeEEeeCccccCChHH---HHHHHHHHHHHHHhcCCEEEEEc-----CCHHHHHhCCEEEEEeCCe
Confidence 99999999999999 899887 88999999999765 78888888 8888777779999999999
Q ss_pred ee
Q 016165 382 VL 383 (394)
Q Consensus 382 i~ 383 (394)
+.
T Consensus 220 ~~ 221 (226)
T COG1136 220 IE 221 (226)
T ss_pred ee
Confidence 53
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.8e-24 Score=205.78 Aligned_cols=192 Identities=21% Similarity=0.337 Sum_probs=152.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC---
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP--- 249 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~--- 249 (394)
-++++.|++.. +++++++++.. +++|+||||||||||||+|+|++ .|..++ +.+.+.+....+
T Consensus 7 ~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe--------~~~~G~--I~i~g~~vt~l~P~~ 74 (338)
T COG3839 7 KNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE--------EPTSGE--ILIDGRDVTDLPPEK 74 (338)
T ss_pred eeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCce--EEECCEECCCCChhH
Confidence 45667888732 89999998887 99999999999999999999999 444444 334444443332
Q ss_pred -CceeeeccCCCCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 250 -GNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 250 -~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
+...++|....|+.++.++|+.+ .+.+..+++.+..+.+++.+ .|..+| ||+|||+ +||+
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVA-------laRA 147 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVA-------LARA 147 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHH-------HHHH
Confidence 55667787777888888887732 23356777788888887765 799999 8999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++++|+++|+ ++|+.- ..+....++.++++ +.++|+|+ ||..++... |++.+|++|++.+.|.+.
T Consensus 148 lVr~P~v~L~DEPlSnLDa~l---R~~mr~ei~~lh~~l~~T~IYVT-----HDq~EAmtladri~Vm~~G~i~Q~g~p~ 219 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKL---RVLMRSEIKKLHERLGTTTIYVT-----HDQVEAMTLADRIVVMNDGRIQQVGTPL 219 (338)
T ss_pred HhcCCCEEEecCchhHhhHHH---HHHHHHHHHHHHHhcCCcEEEEc-----CCHHHHHhhCCEEEEEeCCeeeecCChH
Confidence 9999999999 688754 66667777777664 77889999 999999888 999999999999999998
Q ss_pred eeec
Q 016165 390 RVYI 393 (394)
Q Consensus 390 ~v~~ 393 (394)
++|.
T Consensus 220 ely~ 223 (338)
T COG3839 220 ELYE 223 (338)
T ss_pred HHhh
Confidence 8874
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6e-24 Score=195.24 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=150.2
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecC---cccc----
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGV---DDRS---- 247 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~---~~~~---- 247 (394)
+++.++. -.+++++++++.. .+|++|||||||||||++|+|++ .|..++ |.++++ +...
T Consensus 8 ~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe--------~p~~G~--I~~~~~~l~D~~~~~~~ 75 (345)
T COG1118 8 VKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE--------TPDAGR--IRLNGRVLFDVSNLAVR 75 (345)
T ss_pred hhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC--------CCCCce--EEECCEeccchhccchh
Confidence 3446666 4478888888776 99999999999999999999999 444454 333333 2221
Q ss_pred cCCceeeeccCCCCCcccccccc-cch--------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTA-FLS--------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~-~~~--------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
-..+.+++|+.-.|..++...|+ |-. ..+...++.++|+.+++.+ .|-++| ||+|||+ +
T Consensus 76 ~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVA-------L 148 (345)
T COG1118 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVA-------L 148 (345)
T ss_pred hcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHH-------H
Confidence 22455677777777777777776 311 2356777888888888866 799999 8999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
||+++.+|+++|+ .+|+.- ..++..+|+++..+ +.++++|+ ||.+++.+. |++++|++|+|...+
T Consensus 149 ARALA~eP~vLLLDEPf~ALDa~v---r~~lr~wLr~~~~~~~~ttvfVT-----HD~eea~~ladrvvvl~~G~Ieqvg 220 (345)
T COG1118 149 ARALAVEPKVLLLDEPFGALDAKV---RKELRRWLRKLHDRLGVTTVFVT-----HDQEEALELADRVVVLNQGRIEQVG 220 (345)
T ss_pred HHHhhcCCCeEeecCCchhhhHHH---HHHHHHHHHHHHHhhCceEEEEe-----CCHHHHHhhcceEEEecCCeeeeeC
Confidence 9999999999999 788765 78888899998876 88999999 999999998 999999999999999
Q ss_pred ccceeec
Q 016165 387 EVVRVYI 393 (394)
Q Consensus 387 ~~~~v~~ 393 (394)
.+.++|.
T Consensus 221 ~p~ev~~ 227 (345)
T COG1118 221 PPDEVYD 227 (345)
T ss_pred CHHHHhc
Confidence 8888874
No 18
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=4.8e-25 Score=220.15 Aligned_cols=248 Identities=21% Similarity=0.250 Sum_probs=171.2
Q ss_pred CccchHHHHHHHHHcC--CCHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCccCCCCccCCCCCCCCCc
Q 016165 32 GRITGNDATKFFALSN--LSRQDLKQVWAI-ADAKRQGYLGYREFIAAMQLISLVQDGHQVTHDLWNSDVDFQNLKPPAM 108 (394)
Q Consensus 32 g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l-~d~~~~g~l~~~ef~~a~~Li~~~~~g~~~~~~l~~~~~~~~~~~lp~~ 108 (394)
..-||+++++|..+-| +-+.+|..+-.. +..-..|.++++.| .|+++||.++
T Consensus 63 ~S~TGEDvvEi~~HGg~~v~~~il~~l~~~g~R~A~pGEFT~RAf-------------------------lNGk~DL~qa 117 (442)
T TIGR00450 63 NSYTGEDVIEIQCHGSMLIVQEILQLCLKSGARLAQPGEFTQRAF-------------------------LNGKMDLTQA 117 (442)
T ss_pred CCcccccEEEEECCCCHHHHHHHHHHHHHcCCeEcCCchhhHHHH-------------------------hcCCccHHHH
Confidence 3568999999988876 334444444443 44445566666666 5599999999
Q ss_pred cccchhhhhcccCCCCCCCC-CCCCCCCCCCccccccccccCCcc--cchhhhhHHHHHHH-----HHHHhcCCceeeee
Q 016165 109 EGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKI--SMSSVTSIIDGLKR-----LYIQKLKPLEVTYR 180 (394)
Q Consensus 109 ~~l~~~i~a~t~~~~~~a~~-~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~id~~~~-----~~~~~~~~l~~~~~ 180 (394)
|++.++|.|+|+.+++.|++ ++|.++. ++.+| |+.+ .++.+|+.||+.++ .+...+..+.. .
T Consensus 118 Eav~dlI~a~t~~~~~~A~~~l~G~ls~---~~~~~-----r~~l~~~~a~iea~iDf~ee~~~~~~~~~~l~~~~~--~ 187 (442)
T TIGR00450 118 EAINELILAPNNKVKDIALNKLAGELDQ---KIEAI-----RKSLLQLLAQVEVNIDYEEDDDEQDSLNQLLLSIIA--E 187 (442)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCcHHHH---HHHHH-----HHHHHHHHHHeeEECCcCCCCccHHHHHHHHHHHHH--H
Confidence 99999999999999999999 9996655 58899 8888 89999999995432 11112221111 0
Q ss_pred ecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCC
Q 016165 181 FNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMP 260 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~ 260 (394)
........ +...+..+..|+|+|++|||||||+|.|++... ++++..|+||++.+.. .+.
T Consensus 188 l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~--aivs~~pgtTrd~~~~-----------------~i~ 247 (442)
T TIGR00450 188 LKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDR--AIVSDIKGTTRDVVEG-----------------DFE 247 (442)
T ss_pred HHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCcEEEEEEE-----------------EEE
Confidence 00000001 111233445899999999999999999999876 7888899998865421 111
Q ss_pred CCcccccccccchhhhhhcCCccccccceeecCCCCCch----hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCch
Q 016165 261 FSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG----EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDIS 336 (394)
Q Consensus 261 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsG----e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~ 336 (394)
+.|. .+.++||||+... |+.++. .++..+.++|++|+++|++.....
T Consensus 248 ~~g~----------------------~v~l~DTaG~~~~~~~ie~~gi~-------~~~~~~~~aD~il~V~D~s~~~s~ 298 (442)
T TIGR00450 248 LNGI----------------------LIKLLDTAGIREHADFVERLGIE-------KSFKAIKQADLVIYVLDASQPLTK 298 (442)
T ss_pred ECCE----------------------EEEEeeCCCcccchhHHHHHHHH-------HHHHHHhhCCEEEEEEECCCCCCh
Confidence 2222 6689999999761 333444 456678999999999999763222
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 337 DEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 337 ~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
. .. ++..+...+.|+++|.||+|+.+.
T Consensus 299 ~-~~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 299 D-DF-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred h-HH-HHHHHhhCCCCEEEEEECccCCCc
Confidence 2 22 666666568899999999998643
No 19
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=7.8e-23 Score=182.20 Aligned_cols=194 Identities=23% Similarity=0.316 Sum_probs=154.3
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc--
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-- 248 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-- 248 (394)
+.-+++++|++ +.+++++++++.+ +++|+|++|+|||||++++.|+. .|..+. +.+.+.+....
T Consensus 10 ~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll--------~P~~Ge--I~i~G~~i~~ls~ 77 (263)
T COG1127 10 EVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL--------RPDKGE--ILIDGEDIPQLSE 77 (263)
T ss_pred EEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC--------CCCCCe--EEEcCcchhccCH
Confidence 33456778888 7899999999988 99999999999999999999999 455555 44455543322
Q ss_pred -------CCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec-----CCCCCc-hhhhhhhcc
Q 016165 249 -------PGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 249 -------~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~ 307 (394)
....+.+|..-.|..++.++|..++ +....+.+..-|+.+++-- .|..+| |+++|++
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva-- 155 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA-- 155 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH--
Confidence 2466788888889999988887432 2234555555566777642 789999 8999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+|||++.+|+++++ ++|+-. ...+.++++.+++. +.++++|+ ||...+..+ |+++++.+|
T Consensus 156 -----LARAialdPell~~DEPtsGLDPI~---a~~~~~LI~~L~~~lg~T~i~VT-----HDl~s~~~i~Drv~~L~~g 222 (263)
T COG1127 156 -----LARAIALDPELLFLDEPTSGLDPIS---AGVIDELIRELNDALGLTVIMVT-----HDLDSLLTIADRVAVLADG 222 (263)
T ss_pred -----HHHHHhcCCCEEEecCCCCCCCcch---HHHHHHHHHHHHHhhCCEEEEEE-----CChHHHHhhhceEEEEeCC
Confidence 99999999999999 999987 67788899998875 77889898 888888887 999999999
Q ss_pred eeeecCccceeec
Q 016165 381 KVLNTPEVVRVYI 393 (394)
Q Consensus 381 ~i~~~~~~~~v~~ 393 (394)
+++..|.+.+++.
T Consensus 223 kv~~~Gt~~el~~ 235 (263)
T COG1127 223 KVIAEGTPEELLA 235 (263)
T ss_pred EEEEeCCHHHHHh
Confidence 9999988876643
No 20
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.88 E-value=5.5e-23 Score=199.11 Aligned_cols=192 Identities=22% Similarity=0.299 Sum_probs=146.4
Q ss_pred eeeeeecC--CcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 176 EVTYRFND--FVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 176 ~~~~~~~~--~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
++++.|+. ....++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+++...
T Consensus 6 ~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--------p~~G~--I~i~G~~i~~~~~~ 75 (343)
T TIGR02314 6 NITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--------PTSGS--VIVDGQDLTTLSNS 75 (343)
T ss_pred EEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEECCcCCHH
Confidence 45566742 113599999999887 999999999999999999999983 44444 3334443221
Q ss_pred -----cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 248 -----IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 -----~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
.....++++....+...+.+++..+. ..+..+++.++++.+++.+ .|+.+| ||+||+.
T Consensus 76 ~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~----- 150 (343)
T TIGR02314 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVA----- 150 (343)
T ss_pred HHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-----
Confidence 12455566766666556666655321 1234455778888888865 788999 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++.++ +.++++++ |+.+.+.++ |++++|++|+++
T Consensus 151 --IARAL~~~P~iLLlDEPts~LD~~t---~~~i~~lL~~l~~~~g~tiiliT-----H~~~~v~~~~d~v~vl~~G~iv 220 (343)
T TIGR02314 151 --IARALASNPKVLLCDEATSALDPAT---TQSILELLKEINRRLGLTILLIT-----HEMDVVKRICDCVAVISNGELI 220 (343)
T ss_pred --HHHHHHhCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999 888876 88889999998765 78888888 888888886 999999999999
Q ss_pred ecCccceee
Q 016165 384 NTPEVVRVY 392 (394)
Q Consensus 384 ~~~~~~~v~ 392 (394)
..|++.++|
T Consensus 221 ~~g~~~~v~ 229 (343)
T TIGR02314 221 EQGTVSEIF 229 (343)
T ss_pred EEcCHHHHH
Confidence 888776665
No 21
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=1.3e-22 Score=173.22 Aligned_cols=191 Identities=19% Similarity=0.339 Sum_probs=146.4
Q ss_pred eeeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC----Cc
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP----GN 251 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~----~~ 251 (394)
++++.|+. ...--|+.+..+.++||+||+|||||||+|.++|.+ .|..+. +.+++++....+ .+
T Consensus 6 ~V~~~y~~--~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~--------~P~~G~--i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 6 DVRFSYGH--LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE--------TPASGE--ILINGVDHTASPPAERPV 73 (231)
T ss_pred ceEEeeCc--ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc--------CCCCce--EEEcCeecCcCCcccCCh
Confidence 45667765 233344455555699999999999999999999999 455554 444565544332 34
Q ss_pred eeeeccCCCCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 252 TVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
+..+|+...|..++...|.-+ -+.+..+++..++.++++.+ .|+.+| ||+|||+ +||.+++
T Consensus 74 SmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvA-------LARclvR 146 (231)
T COG3840 74 SMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVA-------LARCLVR 146 (231)
T ss_pred hhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHH-------HHHHHhc
Confidence 456778777877777766521 12367777888888999876 799999 8999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceee
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~ 392 (394)
+-.++|+ .+|+. ...+...++..++.+ +.++++|+ |.++++..+ ++++++.+|+|...+.+.+.+
T Consensus 147 ~~PilLLDEPFsALdP~---LR~eMl~Lv~~l~~E~~~TllmVT-----H~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 147 EQPILLLDEPFSALDPA---LRAEMLALVSQLCDERKMTLLMVT-----HHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred cCCeEEecCchhhcCHH---HHHHHHHHHHHHHHhhCCEEEEEe-----CCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999998 67764 478888888888764 67888898 888888887 999999999999988877665
Q ss_pred c
Q 016165 393 I 393 (394)
Q Consensus 393 ~ 393 (394)
.
T Consensus 219 ~ 219 (231)
T COG3840 219 S 219 (231)
T ss_pred c
Confidence 3
No 22
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=7.5e-23 Score=199.56 Aligned_cols=190 Identities=16% Similarity=0.209 Sum_probs=146.4
Q ss_pred eeeeee-cCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 176 EVTYRF-NDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 176 ~~~~~~-~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
+++++| ++ ..++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+....
T Consensus 8 ~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--------p~~G~--I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 8 AVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--------ITSGE--IWIGGRVVNELEPAD 75 (356)
T ss_pred eEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--------CCceE--EEECCEECCCCCHHH
Confidence 556677 55 5689999999887 999999999999999999999983 44444 33344332211
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....+++|....|+.++..+|..+. ..+..+.+.++++.+++.+ .|..+| ||+||++ +||+
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRva-------lARA 148 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVA-------MGRA 148 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHH-------HHHH
Confidence 2456677777667777776665321 1233455677888888865 788899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ .+|+.. ...+.+.++.+.++ +.++|+|+ |+.+++..+ |+++++++|+++..|++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tii~vT-----Hd~~ea~~l~D~i~vl~~G~i~~~g~~~ 220 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKL---RVQMRLEIQRLHRRLKTTSLYVT-----HDQVEAMTLADRVVVMNGGVAEQIGTPV 220 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEeCCEEEEECCHH
Confidence 9999999999 788766 77888888888765 78899998 888888887 999999999999888777
Q ss_pred eee
Q 016165 390 RVY 392 (394)
Q Consensus 390 ~v~ 392 (394)
++|
T Consensus 221 ~~~ 223 (356)
T PRK11650 221 EVY 223 (356)
T ss_pred HHH
Confidence 665
No 23
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=8.9e-24 Score=182.88 Aligned_cols=189 Identities=22% Similarity=0.319 Sum_probs=152.6
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP---- 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~---- 249 (394)
++.++|++ +.+++++|+.+.+ +|+++|||||||||.++++.|.. .|..++ +.+++.+....|
T Consensus 9 ~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv--------~~d~G~--i~ld~~diT~lPm~~R 76 (243)
T COG1137 9 NLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV--------RPDSGK--ILLDDEDITKLPMHKR 76 (243)
T ss_pred hhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE--------ecCCce--EEECCcccccCChHHH
Confidence 44557777 7799999999887 99999999999999999999999 455555 555666665554
Q ss_pred ---CceeeeccCCCCCccccccccc--ch-----hh--hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 250 ---GNTVAVQADMPFSGLTTFGTAF--LS-----KF--ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 250 ---~~~~~~~~~~~~~g~~~~~~~~--~~-----~~--~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
|.+|.+|+...|.+++...|+. +. .. +.....+++|+.|.+.. .+..+| ||+.|++
T Consensus 77 ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~E------- 149 (243)
T COG1137 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVE------- 149 (243)
T ss_pred hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHH-------
Confidence 8888999999999999888873 11 11 23334668888888865 566788 8999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
|||+++.+|+.+|+ ++|+-. -.++.++++.|+..|..|+|-= |+..+...+ |+.++++.|++++.|
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPia---V~dIq~iI~~L~~rgiGvLITD-----HNVREtL~i~dRaYIi~~G~vla~G 221 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIA---VIDIQRIIKHLKDRGIGVLITD-----HNVRETLDICDRAYIISDGKVLAEG 221 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchh---HHHHHHHHHHHHhCCceEEEcc-----ccHHHHHhhhheEEEEecCeEEecC
Confidence 99999999999999 899987 7788899999998888665543 888888777 999999999999877
Q ss_pred cccee
Q 016165 387 EVVRV 391 (394)
Q Consensus 387 ~~~~v 391 (394)
.+.++
T Consensus 222 ~p~ei 226 (243)
T COG1137 222 SPEEI 226 (243)
T ss_pred CHHHH
Confidence 66554
No 24
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=8.6e-23 Score=198.63 Aligned_cols=192 Identities=21% Similarity=0.269 Sum_probs=148.3
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+....
T Consensus 10 ~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--------p~~G~--I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 10 KNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--------PTEGQ--IFIDGEDVTHRSIQQ 77 (351)
T ss_pred EeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--------CCceE--EEECCEECCCCCHHH
Confidence 356678876 5689999999877 999999999999999999999993 44444 33344332211
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....+++|....|+.++..+|..+. ..+..+.+.++++.+++.+ .|..+| ||+||++ +||+
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVa-------LARa 150 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVA-------LARA 150 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHH
Confidence 2455677777777777777766321 1233456677787877754 688899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ ++|+.. ..++.+.|+.+.++ +.++++|+ |+.+++..+ |++++|++|+++..+++.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tii~vT-----Hd~~e~~~laD~i~vm~~G~i~~~g~~~ 222 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANL---RRSMREKIRELQQQFNITSLYVT-----HDQSEAFAVSDTVIVMNKGKIMQIGSPQ 222 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEc-----CCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999 788866 77888888888664 78888888 889998887 999999999999988887
Q ss_pred eeec
Q 016165 390 RVYI 393 (394)
Q Consensus 390 ~v~~ 393 (394)
++|.
T Consensus 223 ~~~~ 226 (351)
T PRK11432 223 ELYR 226 (351)
T ss_pred HHHh
Confidence 7663
No 25
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=7.1e-23 Score=194.67 Aligned_cols=189 Identities=23% Similarity=0.296 Sum_probs=150.4
Q ss_pred ceeeeeec-CCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----
Q 016165 175 LEVTYRFN-DFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR----- 246 (394)
Q Consensus 175 l~~~~~~~-~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~----- 246 (394)
-++++.|+ + +.++++++|++++ +++++||||||||||+|+|+|.. .|..++ +.+.+.+..
T Consensus 8 ~~l~k~~~~~--~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~--------~p~~G~--i~i~G~~~~~~~~~ 75 (293)
T COG1131 8 RNLTKKYGGD--KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL--------KPTSGE--ILVLGYDVVKEPAK 75 (293)
T ss_pred cceEEEeCCC--CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc--------CCCceE--EEEcCEeCccCHHH
Confidence 46677888 5 6799999999987 99999999999999999999999 444454 333443321
Q ss_pred ccCCceeeeccCCCCCcccccccc-cchhh------hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHH
Q 016165 247 SIPGNTVAVQADMPFSGLTTFGTA-FLSKF------ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (394)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~------~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ia 314 (394)
......+.++....+..++..++. ++... ...+.+.++++.+++.+ .++.+| ||+||+. +|
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~-------ia 148 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLS-------IA 148 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHH-------HH
Confidence 223466777888878888887776 33332 23567888999999975 477788 9999999 99
Q ss_pred HHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCC-CeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHD-DKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 315 ral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~-~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
.+++.+|+++|+ ++|+.. ..++.++|+.+.+++ .+|++.+ |..+++..+ |+++++++|+++..+.
T Consensus 149 ~aL~~~P~lliLDEPt~GLDp~~---~~~~~~~l~~l~~~g~~tvliss-----H~l~e~~~~~d~v~il~~G~~~~~g~ 220 (293)
T COG1131 149 LALLHDPELLILDEPTSGLDPES---RREIWELLRELAKEGGVTILLST-----HILEEAEELCDRVIILNDGKIIAEGT 220 (293)
T ss_pred HHHhcCCCEEEECCCCcCCCHHH---HHHHHHHHHHHHhCCCcEEEEeC-----CcHHHHHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999 899987 888999999999887 5666666 888899886 9999999999998876
Q ss_pred cce
Q 016165 388 VVR 390 (394)
Q Consensus 388 ~~~ 390 (394)
+.+
T Consensus 221 ~~~ 223 (293)
T COG1131 221 PEE 223 (293)
T ss_pred HHH
Confidence 554
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.87 E-value=9.5e-23 Score=198.62 Aligned_cols=192 Identities=21% Similarity=0.285 Sum_probs=148.8
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----I 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~ 248 (394)
-++++.|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+++... .
T Consensus 8 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--------p~~G~--I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 8 DNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--------QTAGT--IYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--------CCceE--EEECCEECCCCCHHH
Confidence 356678876 5689999999876 999999999999999999999983 44444 3334433221 1
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....+++|....|+.++..+|..+. ..+..+.+.++++.+++.+ .|..+| ||+||++ +||+
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRva-------LARa 148 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVA-------LARA 148 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHH-------HHHH
Confidence 2456677777777777777766321 1233456778888888765 788899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ .+|+.. ...+.+.|+++.++ +.++|+|+ |+.+++..+ |++++|++|+++..|++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~---r~~l~~~L~~l~~~~~~tvi~vT-----Hd~~ea~~l~d~i~vl~~G~i~~~g~~~ 220 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARV---REHLRTEIRQLQRRLGVTTIMVT-----HDQEEALSMADRIVVMNHGVIEQVGTPQ 220 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEc-----CCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999 888876 78888888888664 78899998 888888887 999999999999988877
Q ss_pred eeec
Q 016165 390 RVYI 393 (394)
Q Consensus 390 ~v~~ 393 (394)
++|.
T Consensus 221 ~~~~ 224 (353)
T TIGR03265 221 EIYR 224 (353)
T ss_pred HHHh
Confidence 7653
No 27
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=3.7e-23 Score=176.07 Aligned_cols=193 Identities=19% Similarity=0.297 Sum_probs=147.9
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC--
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP-- 249 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~-- 249 (394)
..+++++|+. ..+|++++++... +|+|+|.+|||||||++||.=++. |..++. ...++.....+
T Consensus 9 v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--------P~~G~I--~v~geei~~k~~~ 76 (256)
T COG4598 9 VEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--------PSAGSI--RVNGEEIRLKRDK 76 (256)
T ss_pred hhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--------CCCceE--EECCeEEEeeeCC
Confidence 3344568888 7799999998776 999999999999999999998884 333332 22222211111
Q ss_pred -----------------CceeeeccCCCCCccccccccc--------chhhhhhcCCccccccceeec----CCCCCc-h
Q 016165 250 -----------------GNTVAVQADMPFSGLTTFGTAF--------LSKFECSQMPHSLLEHITLVD----TPGVLS-G 299 (394)
Q Consensus 250 -----------------~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~D----t~g~ls-G 299 (394)
..+.++|....|..++...|.. ..+.+..+++..+|.++++.+ +|.++| |
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCch
Confidence 1222444444444455444432 234467888899999999987 899999 8
Q ss_pred hhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-Hh
Q 016165 300 EKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YG 373 (394)
Q Consensus 300 e~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~ 373 (394)
++||++ |||+++.+|+++|| .+|+.- --+++++++.|.++|.++++|+ |++...... ..
T Consensus 157 QQQR~a-------IARaLameP~vmLFDEPTSALDPEl---VgEVLkv~~~LAeEgrTMv~VT-----HEM~FAR~Vss~ 221 (256)
T COG4598 157 QQQRVA-------IARALAMEPEVMLFDEPTSALDPEL---VGEVLKVMQDLAEEGRTMVVVT-----HEMGFARDVSSH 221 (256)
T ss_pred HHHHHH-------HHHHHhcCCceEeecCCcccCCHHH---HHHHHHHHHHHHHhCCeEEEEe-----eehhHHHhhhhh
Confidence 999999 99999999999999 677653 6788999999999999999999 888888887 88
Q ss_pred HhhhccceeeecCccceeec
Q 016165 374 ALMWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 374 ~~~~~~G~i~~~~~~~~v~~ 393 (394)
++++++|.+-..|.+.++|.
T Consensus 222 v~fLh~G~iEE~G~P~qvf~ 241 (256)
T COG4598 222 VIFLHQGKIEEEGPPEQVFG 241 (256)
T ss_pred eEEeecceecccCChHHHhc
Confidence 99999999999999988874
No 28
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.87 E-value=1.5e-22 Score=197.53 Aligned_cols=194 Identities=19% Similarity=0.259 Sum_probs=149.4
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCccc--ceeEEEEecCcccc-
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT--DRFVVVMSGVDDRS- 247 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t--~r~~i~~~~~~~~~- 247 (394)
+.-+++++|++ ..++++++|++.. +++|+||||||||||+++|+|... |.. ++ +.+.+.+...
T Consensus 7 ~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--------p~~~~G~--i~~~g~~~~~~ 74 (362)
T TIGR03258 7 RIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--------AAGLTGR--IAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCCCEE--EEECCEECCCC
Confidence 33456778876 5699999999876 999999999999999999999984 333 33 3344433221
Q ss_pred ---cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
.....++++....|..++..+|..+. ..+..+.+.++++.+++.+ .|..+| ||+||++
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRva------- 147 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIA------- 147 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHH-------
Confidence 12455677777667777777666221 1233455777888888754 788999 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC--CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH--DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~--~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+||+++.+|+++|+ .+|+.. ..++.+.|+++.++ +.++++|+ |+.+++..+ |++++|++|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~---r~~l~~~l~~l~~~~~g~til~vT-----Hd~~ea~~l~dri~vl~~G~i~~ 219 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANI---RANMREEIAALHEELPELTILCVT-----HDQDDALTLADKAGIMKDGRLAA 219 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHH---HHHHHHHHHHHHHhCCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999 888876 78888889888775 68888888 888888887 9999999999999
Q ss_pred cCccceeec
Q 016165 385 TPEVVRVYI 393 (394)
Q Consensus 385 ~~~~~~v~~ 393 (394)
.+++.++|.
T Consensus 220 ~g~~~~~~~ 228 (362)
T TIGR03258 220 HGEPQALYD 228 (362)
T ss_pred EcCHHHHHh
Confidence 888777653
No 29
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.8e-22 Score=178.51 Aligned_cols=191 Identities=15% Similarity=0.233 Sum_probs=132.4
Q ss_pred eeeeecC--CcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 177 VTYRFND--FVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 177 ~~~~~~~--~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
+++.|+. ....++++++|++.+ +++|+|++|||||||.++|+|+..| .++. |.+.++....
T Consensus 9 l~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--------~~G~--I~~~G~~~~~~~~~~ 78 (252)
T COG1124 9 LSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--------SSGS--ILLDGKPLAPKKRAK 78 (252)
T ss_pred eEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--------CCce--EEECCcccCccccch
Confidence 3445554 222499999999887 9999999999999999999999953 3333 2222221111
Q ss_pred --cCCceeeeccCCC-CCccccccccc-----c-hhhhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccChHH
Q 016165 248 --IPGNTVAVQADMP-FSGLTTFGTAF-----L-SKFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 248 --~~~~~~~~~~~~~-~~g~~~~~~~~-----~-~~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
...+-.++|+... ++-....+... . ...+..+.+.++++.+++.. .|..+| ||+||++
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRia------- 151 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIA------- 151 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHH-------
Confidence 1112223333221 11100000000 0 00122233677888888754 899999 8999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
||||++.+|+++|+ .+|+.. +.++++++.+++++ +.+.++|. ||...+..+ |++++|++|++++.
T Consensus 152 IARAL~~~PklLIlDEptSaLD~si---Qa~IlnlL~~l~~~~~lt~l~Is-----Hdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSV---QAQILNLLLELKKERGLTYLFIS-----HDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHH---HHHHHHHHHHHHHhcCceEEEEe-----CcHHHHHHHhhheeeeeCCeEEEe
Confidence 99999999999999 888876 99999999999875 67888888 888888887 99999999999987
Q ss_pred Cccceee
Q 016165 386 PEVVRVY 392 (394)
Q Consensus 386 ~~~~~v~ 392 (394)
.+..+++
T Consensus 224 ~~~~~l~ 230 (252)
T COG1124 224 GPTEELL 230 (252)
T ss_pred echhhhh
Confidence 7666553
No 30
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.7e-23 Score=178.09 Aligned_cols=190 Identities=18% Similarity=0.280 Sum_probs=142.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP---- 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~---- 249 (394)
+++++|+.. ..+++|++|..+. +++|+|+|||||||++++|+++. .|..+...+ ++-+....|
T Consensus 6 ~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL--------~P~~G~v~i--dg~d~~~~p~~vr 74 (245)
T COG4555 6 DLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL--------IPDSGKVTI--DGVDTVRDPSFVR 74 (245)
T ss_pred ehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc--------cCCCceEEE--eecccccChHHHh
Confidence 445677762 4589999998876 99999999999999999999999 455555333 332222211
Q ss_pred -CceeeeccCCCCCcccccccc-cc------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 250 -GNTVAVQADMPFSGLTTFGTA-FL------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 250 -~~~~~~~~~~~~~g~~~~~~~-~~------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
...+.+.+.-.+..++..+++ ++ .+.+.+.+..++.+.+++.| .+|-+| |++|+|. |||+
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~-------iARA 147 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVA-------IARA 147 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHH-------HHHH
Confidence 233333333334445555555 22 23355666777778888866 578888 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
++++|+++++ ++|... ...+.+++.+++..+..|++.. |.+++++.+ |++++++.|+++..|....
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~---~r~~~dfi~q~k~egr~viFSS-----H~m~EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRT---RRKFHDFIKQLKNEGRAVIFSS-----HIMQEVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHH---HHHHHHHHHHhhcCCcEEEEec-----ccHHHHHHhhheEEEEecCcEEEcCCHHH
Confidence 9999999999 889887 8888999999999899888888 889999876 9999999999998776554
Q ss_pred e
Q 016165 391 V 391 (394)
Q Consensus 391 v 391 (394)
+
T Consensus 220 l 220 (245)
T COG4555 220 L 220 (245)
T ss_pred H
Confidence 3
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.87 E-value=2.1e-22 Score=196.27 Aligned_cols=190 Identities=23% Similarity=0.327 Sum_probs=144.6
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----C
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----P 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----~ 249 (394)
++++.|++ ..++++++|++.. +++|+||||||||||+++|+|... |..++ +.+.+++.... .
T Consensus 7 ~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--------p~~G~--I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 7 NIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--------QTSGH--IRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEECCCCCHHHC
Confidence 55667876 5699999999877 999999999999999999999983 33443 33333332111 2
Q ss_pred CceeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
...+++|....+..++..++..+. ..+..+.+.++++.+++.+ .|..+| ||+||++ +
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRva-------l 147 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVA-------L 147 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------H
Confidence 345566666556666665554211 1123456677888888864 788899 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
||+++.+|+++|+ .+|+.. ...+.++|+++.++ +.++++|+ |+.+++..+ |++++|++|+++..+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~---r~~l~~~L~~l~~~~g~tii~vT-----Hd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQV---RKELRRWLRQLHEELKFTSVFVT-----HDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999 888876 78888999888765 78888888 889898887 999999999999888
Q ss_pred ccceee
Q 016165 387 EVVRVY 392 (394)
Q Consensus 387 ~~~~v~ 392 (394)
++.++|
T Consensus 220 ~~~~i~ 225 (353)
T PRK10851 220 TPDQVW 225 (353)
T ss_pred CHHHHH
Confidence 877665
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.87 E-value=1.9e-22 Score=197.60 Aligned_cols=191 Identities=19% Similarity=0.292 Sum_probs=146.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----I 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~ 248 (394)
-++++.|++ ..++++++|++.. +++|+||||||||||+++|+|... |..++ +.+.+++... .
T Consensus 18 ~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--------p~~G~--I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 18 RGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--------PDSGR--IMLDGQDITHVPAEN 85 (375)
T ss_pred EEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--------CCceE--EEECCEECCCCCHHH
Confidence 355667876 5689999998876 999999999999999999999993 43444 3334433221 1
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
.+..+++|....|..++..+|..+. ..+..+.+.++++.+++.+ .|..+| ||+|||+ +||+
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVa-------LARa 158 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVA-------IARA 158 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHH
Confidence 2455677777667777777665221 1123445677788888765 788899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ ++|... ...+.+.|+.+.++ +.++|+|+ |+.+++..+ |++++|++|+++..+++.
T Consensus 159 L~~~P~llLLDEP~s~LD~~~---r~~l~~~L~~l~~~~g~tiI~vT-----Hd~~ea~~laDri~vl~~G~i~~~g~~~ 230 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKL---RKQMQNELKALQRKLGITFVFVT-----HDQEEALTMSDRIVVMRDGRIEQDGTPR 230 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999 888765 77888888888764 78899998 888888887 999999999999888777
Q ss_pred eee
Q 016165 390 RVY 392 (394)
Q Consensus 390 ~v~ 392 (394)
++|
T Consensus 231 ~i~ 233 (375)
T PRK09452 231 EIY 233 (375)
T ss_pred HHH
Confidence 665
No 33
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.86 E-value=3.6e-22 Score=196.90 Aligned_cols=191 Identities=18% Similarity=0.208 Sum_probs=139.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ +.++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+...
T Consensus 7 ~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--------p~sG~--I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 7 SDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--------PTAGT--VLVAGDDVEALSARA 74 (402)
T ss_pred eeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--------CCCcE--EEECCEEcCcCCHHH
Confidence 355678876 6799999999887 999999999999999999999984 33333 2223322211
Q ss_pred -cCCceeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
.....++.+....+..++..++..+. .....+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~----- 149 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVL----- 149 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-----
Confidence 11233444444333333333332111 1234455677788887764 577889 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+||+++++|+++|+ .+|+.. +.+++++|+++.+++.++|+++ |+.+++.++ ++++++++|+++.
T Consensus 150 --IArAL~~~P~iLLLDEPtsgLD~~~---~~~l~~lL~~l~~~g~TIIivs-----Hdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 150 --LARALAQATPVLLLDEPTASLDINH---QVRTLELVRRLVDDGKTAVAAI-----HDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred --HHHHHHcCCCEEEEECCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEE-----CCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999 888876 7889999999987778888887 888898887 9999999999998
Q ss_pred cCccceee
Q 016165 385 TPEVVRVY 392 (394)
Q Consensus 385 ~~~~~~v~ 392 (394)
.+.+.+++
T Consensus 220 ~G~~~ev~ 227 (402)
T PRK09536 220 AGPPADVL 227 (402)
T ss_pred ecCHHHHh
Confidence 88766543
No 34
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.86 E-value=2.8e-22 Score=192.10 Aligned_cols=190 Identities=20% Similarity=0.224 Sum_probs=142.3
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-----S 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~-----~ 247 (394)
-++++.|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..+. +.+.+.+.. .
T Consensus 11 ~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--------p~~G~--v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 11 RNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--------PDAGS--ISLCGEPVPSRARHA 78 (306)
T ss_pred EeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEecccchHHH
Confidence 456678876 5699999999887 999999999999999999999983 44444 223333221 1
Q ss_pred cCCceeeeccCCCCCccccccccc-chh------hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAF-LSK------FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~------~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.....+.++....+..++..++.. ... .+..+.+.++++.+++.+ .++.+| ||+||+. +|+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~ 151 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLT-------LAR 151 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHH-------HHH
Confidence 123555666655555566655542 111 122344567777777754 678889 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
+++.+|+++|+ ++|+.. ...+.++++++++++.++++++ |+.+++..+ |+++++++|+++..+++.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~---~~~l~~~l~~l~~~g~till~s-----H~l~e~~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQA---RHLMWERLRSLLARGKTILLTT-----HFMEEAERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHHhCCCEEEEEC-----CCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999 899877 8888999999987788888887 888888886 999999999999877665
Q ss_pred ee
Q 016165 390 RV 391 (394)
Q Consensus 390 ~v 391 (394)
++
T Consensus 224 ~l 225 (306)
T PRK13537 224 AL 225 (306)
T ss_pred HH
Confidence 43
No 35
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.9e-22 Score=184.34 Aligned_cols=189 Identities=22% Similarity=0.300 Sum_probs=136.6
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+|+|+|... |..++ +.+.+.+...
T Consensus 5 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------p~~G~--i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 5 GLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--------PDSGE--VLIDGEDISGLSEAEL 72 (235)
T ss_pred EEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEEccccChhhH
Confidence 45667765 5699999998887 999999999999999999999984 33333 2233322111
Q ss_pred ---cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
.....++++....+.+.+...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~------ 146 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVA------ 146 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH------
Confidence 12344555555445555554443211 1122334556777777754 678899 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.++ +.++++++ |+.+.+..+ ++++++++|+++.
T Consensus 147 -ia~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tvi~vs-----H~~~~~~~~~d~v~~l~~G~i~~ 217 (235)
T cd03261 147 -LARALALDPELLLYDEPTAGLDPIA---SGVIDDLIRSLKKELGLTSIMVT-----HDLDTAFAIADRIAVLYDGKIVA 217 (235)
T ss_pred -HHHHHhcCCCEEEecCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEe-----cCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999 888876 78888999988764 78888888 888888776 9999999999988
Q ss_pred cCcccee
Q 016165 385 TPEVVRV 391 (394)
Q Consensus 385 ~~~~~~v 391 (394)
.++..++
T Consensus 218 ~g~~~~~ 224 (235)
T cd03261 218 EGTPEEL 224 (235)
T ss_pred ecCHHHH
Confidence 7765544
No 36
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=5.8e-22 Score=176.14 Aligned_cols=189 Identities=21% Similarity=0.353 Sum_probs=142.9
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP---- 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~---- 249 (394)
+++..|+. ..++++++|+++. +++++|+||||||||+++|+|... +.+++ |.+.+++....+
T Consensus 8 ~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--------~~~G~--I~~~G~dit~~p~~~r 75 (237)
T COG0410 8 NLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--------PRSGR--IIFDGEDITGLPPHER 75 (237)
T ss_pred eEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCee--EEECCeecCCCCHHHH
Confidence 45558888 6799999999987 999999999999999999999983 33444 555666655443
Q ss_pred ---CceeeeccCCCCCcccccccccchhhhh-----hcC-Cccccccc-eeec----CCCCCc-hhhhhhhcccChHHHH
Q 016165 250 ---GNTVAVQADMPFSGLTTFGTAFLSKFEC-----SQM-PHSLLEHI-TLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (394)
Q Consensus 250 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~-~~~~l~~~-~l~D----t~g~ls-Ge~qrv~~~~~~~~ia 314 (394)
|..++++..-.|..++..+|..+..... ... .+++.+.| .+.+ .+|.+| ||+|.++ ||
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLA-------ia 148 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLA-------IA 148 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHH-------HH
Confidence 7888899999999999988876443211 111 22233333 1222 799999 8999999 99
Q ss_pred HHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 315 ral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
|+++.+|+++|+ ++-+. +..++++.++.++++ +.+|++|- .+...+.++ |+.+++..|+++..|+
T Consensus 149 RALm~~PklLLLDEPs~GLaP~---iv~~I~~~i~~l~~~~g~tIlLVE-----Qn~~~Al~iaDr~yvle~Griv~~G~ 220 (237)
T COG0410 149 RALMSRPKLLLLDEPSEGLAPK---IVEEIFEAIKELRKEGGMTILLVE-----QNARFALEIADRGYVLENGRIVLSGT 220 (237)
T ss_pred HHHhcCCCEEEecCCccCcCHH---HHHHHHHHHHHHHHcCCcEEEEEe-----ccHHHHHHhhCEEEEEeCCEEEEecC
Confidence 999999999997 33332 367788999999865 66777777 667777777 9999999999998886
Q ss_pred ccee
Q 016165 388 VVRV 391 (394)
Q Consensus 388 ~~~v 391 (394)
..++
T Consensus 221 ~~eL 224 (237)
T COG0410 221 AAEL 224 (237)
T ss_pred HHHH
Confidence 5543
No 37
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.86 E-value=4.4e-22 Score=193.00 Aligned_cols=193 Identities=20% Similarity=0.216 Sum_probs=143.0
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc---
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--- 246 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--- 246 (394)
++--++++.|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..+. +.+.|.+..
T Consensus 42 i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--------p~~G~--i~i~G~~~~~~~ 109 (340)
T PRK13536 42 IDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--------PDAGK--ITVLGVPVPARA 109 (340)
T ss_pred EEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--------CCceE--EEECCEECCcch
Confidence 344466778876 5699999999887 999999999999999999999983 44443 333333321
Q ss_pred --ccCCceeeeccCCCCCccccccccc-chh------hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 247 --SIPGNTVAVQADMPFSGLTTFGTAF-LSK------FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 247 --~~~~~~~~~~~~~~~~g~~~~~~~~-~~~------~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
......+.++....+..++...+.. ... .+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~------- 182 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLT------- 182 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHH-------
Confidence 1123455556555455555555442 111 122334556777777764 677889 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
+|++++.+|+++|+ ++|+.. ...+.++++++.+.+.++++++ |+.+++..+ ++++++++|+++..+
T Consensus 183 lA~aL~~~P~lLiLDEPt~gLD~~~---r~~l~~~l~~l~~~g~tilisS-----H~l~e~~~~~d~i~il~~G~i~~~g 254 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGLDPHA---RHLIWERLRSLLARGKTILLTT-----HFMEEAERLCDRLCVLEAGRKIAEG 254 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEC-----CCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999 899877 8889999999987788888887 888888887 999999999999877
Q ss_pred cccee
Q 016165 387 EVVRV 391 (394)
Q Consensus 387 ~~~~v 391 (394)
.+.++
T Consensus 255 ~~~~l 259 (340)
T PRK13536 255 RPHAL 259 (340)
T ss_pred CHHHH
Confidence 66543
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.1e-21 Score=195.64 Aligned_cols=94 Identities=32% Similarity=0.441 Sum_probs=89.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 016165 4 GTGPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (394)
Q Consensus 4 ~~~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~ 83 (394)
+...+|.+|++||++|++.|.++.+ +.|||+|++|++||++||||..+|++||.|+|.|+||.+|..||.|||+||.++
T Consensus 3 g~~n~WavT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lk 81 (1118)
T KOG1029|consen 3 GMTNPWAVTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLK 81 (1118)
T ss_pred CCCCccccchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHH
Confidence 4567799999999999999999998 779999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccCCCCcc
Q 016165 84 QDGHQVTHDLWNSDV 98 (394)
Q Consensus 84 ~~g~~~~~~l~~~~~ 98 (394)
.+|.++|+.|||+.+
T Consensus 82 LqG~~lP~~LPPsll 96 (1118)
T KOG1029|consen 82 LQGIQLPPVLPPSLL 96 (1118)
T ss_pred hcCCcCCCCCChHHh
Confidence 999999999999654
No 39
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=6.4e-24 Score=213.16 Aligned_cols=247 Identities=21% Similarity=0.277 Sum_probs=165.0
Q ss_pred ccchHHHHHHHHHcC--CCHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCccCCCCccCCCCCCCCCcc
Q 016165 33 RITGNDATKFFALSN--LSRQDLKQVWAI-ADAKRQGYLGYREFIAAMQLISLVQDGHQVTHDLWNSDVDFQNLKPPAME 109 (394)
Q Consensus 33 ~i~g~~~~~~~~~s~--L~~~~L~~Iw~l-~d~~~~g~l~~~ef~~a~~Li~~~~~g~~~~~~l~~~~~~~~~~~lp~~~ 109 (394)
.-||+++++|..+-| +-+.+|..+-.. +..-..|.++++.| .|+++||.++|
T Consensus 72 S~TGEd~vEi~~HG~~~v~~~il~~l~~~g~r~A~pGEFt~RAf-------------------------lngk~dL~qaE 126 (449)
T PRK05291 72 SFTGEDVVEIQCHGGPAVLNLILELLLALGARLAEPGEFTKRAF-------------------------LNGKLDLTQAE 126 (449)
T ss_pred CccCCcEEEEECCCCHHHHHHHHHHHHHcCCEEccCccchHHHH-------------------------hcCCcCHHHHH
Confidence 358899999888866 233334433333 33345566666666 55999999999
Q ss_pred ccchhhhhcccCCCCCCCC-CCCCCCCCCCccccccccccCCcc--cchhhhhHHHHHH--------HHHHHhcCCceee
Q 016165 110 GLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKI--SMSSVTSIIDGLK--------RLYIQKLKPLEVT 178 (394)
Q Consensus 110 ~l~~~i~a~t~~~~~~a~~-~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~id~~~--------~~~~~~~~~l~~~ 178 (394)
++.++|.|+|+.+++.|++ ++|.++. .+..| |+.| .++.+|+.||+.+ +.+..++..+...
T Consensus 127 ai~~li~a~t~~~~~~al~~l~G~l~~---~~~~~-----r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~ 198 (449)
T PRK05291 127 AIADLIDAKTEAAARLALRQLQGALSK---LINEL-----REELLELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAE 198 (449)
T ss_pred HHHHHHhCCCHHHHHHHHHhcCcHHHH---HHHHH-----HHHHHHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHH
Confidence 9999999999999999999 9996655 58899 8888 7899999998432 1222223222111
Q ss_pred eeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccC
Q 016165 179 YRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQAD 258 (394)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~ 258 (394)
. .+.....-++-.+..+.+|+++|.+|||||||+|.|++... ++++..|+++++.+.. .
T Consensus 199 l--~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~--a~v~~~~gtT~d~~~~-----------------~ 257 (449)
T PRK05291 199 L--EALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEER--AIVTDIAGTTRDVIEE-----------------H 257 (449)
T ss_pred H--HHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCcccccEEE-----------------E
Confidence 0 00000000111223345899999999999999999999875 6788888888765321 0
Q ss_pred CCCCcccccccccchhhhhhcCCccccccceeecCCCCCch----hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCC
Q 016165 259 MPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG----EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD 334 (394)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsG----e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~ 334 (394)
+.+.|. .+.++||||+... ++.++. .+...+.++|++++++|++...
T Consensus 258 i~~~g~----------------------~i~l~DT~G~~~~~~~ie~~gi~-------~~~~~~~~aD~il~VvD~s~~~ 308 (449)
T PRK05291 258 INLDGI----------------------PLRLIDTAGIRETDDEVEKIGIE-------RSREAIEEADLVLLVLDASEPL 308 (449)
T ss_pred EEECCe----------------------EEEEEeCCCCCCCccHHHHHHHH-------HHHHHHHhCCEEEEEecCCCCC
Confidence 111222 6789999998751 222233 3456789999999999997632
Q ss_pred chHHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 335 ISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 335 ~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
..+..+++.. ..+.|+++|.||+|+.+.
T Consensus 309 -s~~~~~~l~~--~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 309 -TEEDDEILEE--LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred -ChhHHHHHHh--cCCCCcEEEEEhhhcccc
Confidence 2233344443 346899999999998653
No 40
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.9e-22 Score=194.43 Aligned_cols=191 Identities=19% Similarity=0.263 Sum_probs=143.1
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----I 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~ 248 (394)
-++++.|++ ..++++++|++.. +++|+|+||||||||+++|+|... |..++ +.+.+.+... .
T Consensus 7 ~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--------p~~G~--I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 7 RNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--------ITSGD--LFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--------CCceE--EEECCEECCCCCHhH
Confidence 355667876 5689999999877 999999999999999999999984 33343 2333332211 1
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....++++....+..++..++..+. ..+..+.+.++++.+++.+ .++.+| ||+||+. +||+
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRva-------LAra 147 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVA-------IGRT 147 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHH
Confidence 2345566666666666666655221 1123345677788888754 678899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ .+|+.. ...+.++|+++.++ +.++|+++ |+.+++..+ |+++++++|+++..+++.
T Consensus 148 L~~~P~lLLLDEPts~LD~~~---~~~l~~~L~~l~~~~g~tvI~vT-----Hd~~~~~~~~d~i~vl~~G~i~~~g~~~ 219 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAAL---RVQMRIEISRLHKRLGRTMIYVT-----HDQVEAMTLADKIVVLDAGRVAQVGKPL 219 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHHhCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999 888876 77888888888664 78888888 888888876 999999999999887766
Q ss_pred eee
Q 016165 390 RVY 392 (394)
Q Consensus 390 ~v~ 392 (394)
++|
T Consensus 220 ~i~ 222 (369)
T PRK11000 220 ELY 222 (369)
T ss_pred HHH
Confidence 654
No 41
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.86 E-value=4.6e-22 Score=193.78 Aligned_cols=186 Identities=20% Similarity=0.311 Sum_probs=143.5
Q ss_pred eecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----------
Q 016165 180 RFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---------- 247 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---------- 247 (394)
+|++ ..++++++|+++. +++|+|+||||||||+++|+|.. .|..++ +.+.+++...
T Consensus 2 ~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~--------~p~~G~--I~i~G~~i~~~~~~~~~~~r 69 (363)
T TIGR01186 2 KTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI--------EPTAGQ--IFIDGENIMKQSPVELREVR 69 (363)
T ss_pred ccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC--------CCCceE--EEECCEECCcCCHHHHHHHH
Confidence 3555 5689999999887 99999999999999999999999 344444 3344443321
Q ss_pred cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.....+++|....++..+...|..+. ..+..+.+.++++.+++.+ .|+.+| ||+||+. +||
T Consensus 70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~-------lAR 142 (363)
T TIGR01186 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVG-------LAR 142 (363)
T ss_pred hCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHH-------HHH
Confidence 23456677777777777776665321 1234556778888888854 688899 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
+++.+|+++|+ .+|+.. ...+.+.+..+.+. ++++++++ |+.+++..+ +++++|++|+++..+++
T Consensus 143 AL~~~p~iLLlDEP~saLD~~~---r~~l~~~l~~l~~~~~~Tii~vT-----Hd~~ea~~~~drI~vl~~G~iv~~g~~ 214 (363)
T TIGR01186 143 ALAAEPDILLMDEAFSALDPLI---RDSMQDELKKLQATLQKTIVFIT-----HDLDEAIRIGDRIVIMKAGEIVQVGTP 214 (363)
T ss_pred HHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999 888876 78888888888654 78888888 888888776 99999999999988776
Q ss_pred ceee
Q 016165 389 VRVY 392 (394)
Q Consensus 389 ~~v~ 392 (394)
.+++
T Consensus 215 ~ei~ 218 (363)
T TIGR01186 215 DEIL 218 (363)
T ss_pred HHHH
Confidence 5543
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1e-21 Score=179.68 Aligned_cols=188 Identities=18% Similarity=0.239 Sum_probs=134.8
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----c
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-----I 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-----~ 248 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .
T Consensus 5 ~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 5 NLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--------PTSGR--ATVAGHDVVREPREVR 72 (220)
T ss_pred EEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEecCcChHHHh
Confidence 45667776 5699999999887 999999999999999999999883 33333 2222322110 1
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....+.++....+.+.+...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+. +|++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~-------la~a 145 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLE-------IARS 145 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHH-------HHHH
Confidence 1234444554444444444443111 1122344567778887754 578899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ .+|+.. ...+.++++++.++ +.++++++ |+.+.+..+ ++++++++|+++..+++.
T Consensus 146 l~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tvi~~t-----H~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQT---RAHVWEYIEKLKEEFGMTILLTT-----HYMEEAEQLCDRVAIIDHGRIIAEGTPE 217 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEeCCEEEEeCChH
Confidence 9999999999 888876 77888889888765 77888888 888888776 999999999998776654
Q ss_pred e
Q 016165 390 R 390 (394)
Q Consensus 390 ~ 390 (394)
+
T Consensus 218 ~ 218 (220)
T cd03265 218 E 218 (220)
T ss_pred H
Confidence 3
No 43
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.3e-22 Score=193.41 Aligned_cols=191 Identities=20% Similarity=0.287 Sum_probs=144.4
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----I 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~ 248 (394)
-++++.|++ ..++++++|++.. +++|+||||||||||+++|+|... |..++ +.+.+++... .
T Consensus 23 ~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--------p~~G~--I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 23 RNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--------PTAGQ--IMLDGVDLSHVPPYQ 90 (377)
T ss_pred EeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--------CCceE--EEECCEECCCCCHHH
Confidence 355667766 4589999998876 999999999999999999999994 33443 3333333221 1
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....+++|....|..++..+|..+. ..+..+.+.++++.+++.+ .|..+| ||+||++ +||+
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVa-------LARA 163 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVA-------LARS 163 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHH
Confidence 2455677777777777777766321 1233455677888888764 788899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ .+|... ...+.+.++++.+ .+.++|+|+ |+.+++..+ |++++|++|+++..+++.
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tii~vT-----Hd~~ea~~laDri~vl~~G~i~~~g~~~ 235 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKL---RDRMQLEVVDILERVGVTCVMVT-----HDQEEAMTMAGRIAIMNRGKFVQIGEPE 235 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEc-----CCHHHHHHhCCEEEEEeCCEEEEEcCHH
Confidence 9999999999 788765 6677777777654 478888888 889888887 999999999999988877
Q ss_pred eee
Q 016165 390 RVY 392 (394)
Q Consensus 390 ~v~ 392 (394)
++|
T Consensus 236 ~~~ 238 (377)
T PRK11607 236 EIY 238 (377)
T ss_pred HHH
Confidence 765
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.85 E-value=1.3e-21 Score=178.58 Aligned_cols=182 Identities=24% Similarity=0.331 Sum_probs=130.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++....++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 6 QVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--------PTRGK--IRFNGQDLTRLRGREI 75 (216)
T ss_pred EEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEehhhcChhHH
Confidence 45667754213589999999887 999999999999999999999983 33333 3333332211
Q ss_pred ---cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
.....+.++....+...+..++..+. .....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~------- 148 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVA------- 148 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------
Confidence 12344555555444444554443211 1123344567777887754 678899 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++++.+.++|+++ |+.+.+..+ ++++++++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~vs-----H~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPEL---SRDIMRLFEEFNRRGTTVLVAT-----HDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999 888876 7888899988876677888888 888888776 89999988874
No 45
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.85 E-value=1.6e-21 Score=180.35 Aligned_cols=190 Identities=25% Similarity=0.367 Sum_probs=136.1
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 5 ~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 5 GLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--------PTSGS--VLFDGEDITGLPPHEI 72 (236)
T ss_pred eeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--------CCCce--EEECCEECCCCCHHHH
Confidence 45567765 4689999999887 999999999999999999999983 33333 2223322111
Q ss_pred -cCCceeeeccCCCCCcccccccccch-----------------hhhhhcCCccccccceeec----CCCCCc-hhhhhh
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS-----------------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRT 304 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv 304 (394)
..+..+.++....+.+.+...+..+. .....+.+.++++.+++.+ .+..+| ||+||+
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRL 152 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHH
Confidence 11234455554444454544443111 1122334566777777754 567788 999999
Q ss_pred hcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS 378 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~ 378 (394)
. +|++++.+|+++|+ .+|+.. ...+.++++++.+.+.++|+++ |+.+.+..+ +++++++
T Consensus 153 ~-------la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~vs-----H~~~~~~~~~d~i~~l~ 217 (236)
T cd03219 153 E-------IARALATDPKLLLLDEPAAGLNPEE---TEELAELIRELRERGITVLLVE-----HDMDVVMSLADRVTVLD 217 (236)
T ss_pred H-------HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----cCHHHHHHhCCEEEEEe
Confidence 9 99999999999999 888876 7888899998876678888888 888888776 9999999
Q ss_pred cceeeecCccceee
Q 016165 379 LGKVLNTPEVVRVY 392 (394)
Q Consensus 379 ~G~i~~~~~~~~v~ 392 (394)
+|+++..++..+++
T Consensus 218 ~G~i~~~~~~~~~~ 231 (236)
T cd03219 218 QGRVIAEGTPDEVR 231 (236)
T ss_pred CCEEEeecCHHHhc
Confidence 99998877665543
No 46
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.2e-21 Score=179.31 Aligned_cols=192 Identities=22% Similarity=0.345 Sum_probs=142.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|.+. ..+++++++.+.+ .++|+|+||||||||+++|+|...| ..++. .+.+.+..
T Consensus 7 ~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--------~~G~v--~~~g~~~~~~~~~~ 75 (235)
T COG1122 7 ENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--------TSGEV--LVDGLDTSSEKSLL 75 (235)
T ss_pred EEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--------CCCEE--EECCeeccchhhHH
Confidence 4567788775 5799999999887 9999999999999999999999953 22221 11121110
Q ss_pred -ccCCceeeeccC-CCCCcccccccc-c------chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 247 -SIPGNTVAVQAD-MPFSGLTTFGTA-F------LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 247 -~~~~~~~~~~~~-~~~~g~~~~~~~-~------~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
....+.+++|.. ..+-+-+..... | +...+..+++.++++.+++.+ .|..+| ||+||++
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRva------- 148 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVA------- 148 (235)
T ss_pred HhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHH-------
Confidence 011223333332 112222222222 1 223356777888899998864 788899 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
||.+++.+|+++|+ ++|+.. ..+++++++++++. ++++|+++ |+.+.+..+ ++++++++|+++..
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~---~~~l~~~l~~L~~~~~~tii~~t-----Hd~~~~~~~ad~v~vl~~G~i~~~ 220 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKG---RRELLELLKKLKEEGGKTIIIVT-----HDLELVLEYADRVVVLDDGKILAD 220 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHH---HHHHHHHHHHHHhcCCCeEEEEe-----CcHHHHHhhCCEEEEEECCEEeec
Confidence 99999999999999 899887 88999999999887 57888888 888899886 99999999999998
Q ss_pred Cccceee
Q 016165 386 PEVVRVY 392 (394)
Q Consensus 386 ~~~~~v~ 392 (394)
|++.++|
T Consensus 221 g~p~~i~ 227 (235)
T COG1122 221 GDPAEIF 227 (235)
T ss_pred CCHHHHh
Confidence 8876665
No 47
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.5e-21 Score=180.85 Aligned_cols=190 Identities=23% Similarity=0.328 Sum_probs=134.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----I 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~ 248 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .
T Consensus 6 ~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~ 73 (239)
T cd03296 6 RNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--------PDSGT--ILFGGEDATDVPVQE 73 (239)
T ss_pred EeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEECCcCCccc
Confidence 355667876 5699999999887 999999999999999999999983 33333 2233322111 1
Q ss_pred CCceeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
....++.+....+...+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~------- 146 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVA------- 146 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH-------
Confidence 2344455554444444444443111 0111233456677777643 578889 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++++. +.++|+++ |+.+.+... ++++++++|+++..
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tvii~s-----H~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKV---RKELRRWLRRLHDELHVTTVFVT-----HDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999999999999 888876 78888999988764 77888888 778777776 99999999999877
Q ss_pred Ccccee
Q 016165 386 PEVVRV 391 (394)
Q Consensus 386 ~~~~~v 391 (394)
+.+.++
T Consensus 219 ~~~~~~ 224 (239)
T cd03296 219 GTPDEV 224 (239)
T ss_pred cCHHHH
Confidence 766544
No 48
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.85 E-value=1.9e-21 Score=179.32 Aligned_cols=189 Identities=21% Similarity=0.301 Sum_probs=135.3
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 5 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 5 NLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--------PDSGK--ILLDGQDITKLPMHKR 72 (232)
T ss_pred EEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEecccCCHhHH
Confidence 45667766 5699999999887 999999999999999999999983 33333 2223322111
Q ss_pred -cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHH
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ia 314 (394)
..+..+.++....+.+.+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+. +|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la 145 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVE-------IA 145 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HH
Confidence 11344455554445555544443211 0112234456777777753 577788 9999999 99
Q ss_pred HHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 315 ral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
++++.+|+++|+ .+|+.. ...+.++++++.+++.++|+++ |+.+.+... ++++++++|+++..++.
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~---~~~~~~~l~~~~~~~~tii~~s-----H~~~~~~~~~d~i~~l~~G~i~~~~~~ 217 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIA---VQDIQKIIKILKDRGIGVLITD-----HNVRETLSITDRAYIIYEGKVLAEGTP 217 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEEECCeEEEEeCH
Confidence 999999999999 888876 7888899998877777888888 888888776 99999999999876655
Q ss_pred cee
Q 016165 389 VRV 391 (394)
Q Consensus 389 ~~v 391 (394)
.++
T Consensus 218 ~~~ 220 (232)
T cd03218 218 EEI 220 (232)
T ss_pred HHh
Confidence 443
No 49
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.85 E-value=8.7e-22 Score=188.64 Aligned_cols=184 Identities=19% Similarity=0.218 Sum_probs=136.6
Q ss_pred eecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----cCCce
Q 016165 180 RFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-----IPGNT 252 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-----~~~~~ 252 (394)
.|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..+. +.+.+.+... .....
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~~~i~ 69 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--------PTSGT--ARVAGYDVVREPRKVRRSIG 69 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEEcccCHHHHHhhcE
Confidence 4555 5689999999887 999999999999999999999983 44444 2333322211 12345
Q ss_pred eeeccCCCCCcccccccccc-h------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhc
Q 016165 253 VAVQADMPFSGLTTFGTAFL-S------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~-~------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
+.++....+.+++..++..+ . .....+.+.++++.+++.+ .++.+| ||+||+. +|++++.+
T Consensus 70 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~ 142 (302)
T TIGR01188 70 IVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLD-------IAASLIHQ 142 (302)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHH-------HHHHHhcC
Confidence 55566555556565555421 1 1122344667788888754 678899 9999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
|+++|+ ++|+.. ...+.++++.+++.+.++++++ |+.+++..+ ++++++++|+++..+.+.+
T Consensus 143 p~lllLDEPt~gLD~~~---~~~l~~~l~~~~~~g~tvi~~s-----H~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 210 (302)
T TIGR01188 143 PDVLFLDEPTTGLDPRT---RRAIWDYIRALKEEGVTILLTT-----HYMEEADKLCDRIAIIDHGRIIAEGTPEE 210 (302)
T ss_pred CCEEEEeCCCcCCCHHH---HHHHHHHHHHHHhCCCEEEEEC-----CCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999 888876 7888899999877788888887 888888876 9999999999987766544
No 50
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.6e-21 Score=177.44 Aligned_cols=183 Identities=21% Similarity=0.298 Sum_probs=130.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IP 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~ 249 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+++... ..
T Consensus 5 ~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------p~~G~--i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 5 GLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--------PDSGE--ILIDGRDVTGVPPERR 72 (213)
T ss_pred eeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCeE--EEECCEEcCcCchhhc
Confidence 45667766 5699999999887 999999999999999999999983 33333 2233322211 11
Q ss_pred CceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
...+.++....+.+.+...+..+. .....+.+.++++.+++.+ .+..+| ||+||+. +|+++
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~-------la~al 145 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVA-------LARAL 145 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH-------HHHHH
Confidence 234444544444444444443211 1122334566777777754 567889 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+.+|+++|+ .+|+.. ...+.++++++.+ .+.++++++ |+.+.+..+ ++++.+++|+++..
T Consensus 146 ~~~p~~lllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~s-----H~~~~~~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKL---REELREELKELQRELGITTIYVT-----HDQEEALALADRIAVMNEGRIVQV 212 (213)
T ss_pred hcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----cCHHHHHHhcCEEEEEECCEEEec
Confidence 999999999 888876 7888899988865 377888887 888887776 99999999998754
No 51
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.85 E-value=1.5e-21 Score=187.00 Aligned_cols=190 Identities=20% Similarity=0.210 Sum_probs=137.1
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-----S 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~-----~ 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+.. .
T Consensus 8 ~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~ 75 (303)
T TIGR01288 8 VGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--------PDRGK--ITVLGEPVPSRARLA 75 (303)
T ss_pred EeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEECcccHHHH
Confidence 456677876 5699999999887 999999999999999999999983 33333 222222211 1
Q ss_pred cCCceeeeccCCCCCccccccccc-ch------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAF-LS------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~-~~------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.....+.++....+...+...+.. .. .....+.+.++++.+++.+ .++.+| ||+||+. +|+
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~-------la~ 148 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLT-------LAR 148 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHH-------HHH
Confidence 123444555544444455544432 11 1112233456677777754 678899 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
+++.+|+++|+ ++|+.. ...+.++++++.+++.++++++ |+.+++..+ ++++++++|+++..++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~---~~~l~~~l~~~~~~g~til~~s-----H~~~~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHA---RHLIWERLRSLLARGKTILLTT-----HFMEEAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHHhCCCEEEEEC-----CCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999 888876 7888899999877788888888 888888876 999999999998776654
Q ss_pred ee
Q 016165 390 RV 391 (394)
Q Consensus 390 ~v 391 (394)
++
T Consensus 221 ~~ 222 (303)
T TIGR01288 221 AL 222 (303)
T ss_pred HH
Confidence 43
No 52
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.6e-21 Score=189.78 Aligned_cols=192 Identities=22% Similarity=0.301 Sum_probs=139.1
Q ss_pred eeeeeec--CCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 176 EVTYRFN--DFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 176 ~~~~~~~--~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
++++.|+ +....++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 6 ~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--------p~~G~--I~~~g~~i~~~~~~ 75 (343)
T PRK11153 6 NISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--------PTSGR--VLVDGQDLTALSEK 75 (343)
T ss_pred eEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--------CCceE--EEECCEECCcCCHH
Confidence 4566776 2124699999999887 999999999999999999999983 33343 3333332211
Q ss_pred -----cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 248 -----IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 -----~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
.....++++....+...+...+..+. ..+..+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~----- 150 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVA----- 150 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-----
Confidence 12344555655555555555554211 1122344566777777754 578899 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ .+|+.. ...+.++|+++.++ +.++|+++ |+.+.+..+ ++++++++|+++
T Consensus 151 --lAraL~~~p~iLlLDEPts~LD~~~---~~~l~~~L~~l~~~~g~tiilvt-----H~~~~i~~~~d~v~~l~~G~i~ 220 (343)
T PRK11153 151 --IARALASNPKVLLCDEATSALDPAT---TRSILELLKDINRELGLTIVLIT-----HEMDVVKRICDRVAVIDAGRLV 220 (343)
T ss_pred --HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999 888876 78888999988664 77888888 888888876 999999999999
Q ss_pred ecCccceee
Q 016165 384 NTPEVVRVY 392 (394)
Q Consensus 384 ~~~~~~~v~ 392 (394)
..+.+.+++
T Consensus 221 ~~g~~~~~~ 229 (343)
T PRK11153 221 EQGTVSEVF 229 (343)
T ss_pred EEcCHHHHH
Confidence 877665543
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.84 E-value=3.3e-21 Score=175.47 Aligned_cols=184 Identities=20% Similarity=0.279 Sum_probs=129.8
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IP 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~ 249 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+++... ..
T Consensus 5 ~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------~~~G~--v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 5 NVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--------PTSGR--IYIGGRDVTDLPPKDR 72 (213)
T ss_pred eeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEECCcCCcccc
Confidence 45667776 5699999999887 999999999999999999999984 33333 2222222111 11
Q ss_pred CceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
...+.++....+...+...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+. +|+++
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~-------laral 145 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVA-------LGRAI 145 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHH-------HHHHH
Confidence 233444444334344444443111 1122334556677777643 678889 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
+.+|+++|+ .+|+.. ...+.++++++.++ +.++++++ |+.+++..+ ++++++++|+++..|
T Consensus 146 ~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tvi~~s-----H~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKL---RVQMRAELKRLQQRLGTTTIYVT-----HDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999 888876 77888899888764 77888888 888888776 899999999987653
No 54
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=4.9e-21 Score=161.93 Aligned_cols=185 Identities=22% Similarity=0.266 Sum_probs=139.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
++++..-+...-.+|+++++.+.+ .++||||+|||||||+-.++|++. |..+. +...+++...
T Consensus 12 l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--------~ssGe--V~l~G~~L~~ldEd~ 81 (228)
T COG4181 12 LSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--------PSSGE--VRLLGQPLHKLDEDA 81 (228)
T ss_pred hhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--------CCCce--EEEcCcchhhcCHHH
Confidence 334333333334689999998887 999999999999999999999994 44444 2333433221
Q ss_pred ---cC--CceeeeccCCCCCcccccccccchhh-------hhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 248 ---IP--GNTVAVQADMPFSGLTTFGTAFLSKF-------ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 ---~~--~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
+. .+.+++|....++.++..+|..++-. .....+.++|+.+++.+ .|+++| ||+|||+
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVA----- 156 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVA----- 156 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHH-----
Confidence 11 34557777777778877777644322 23445678888888765 899999 8999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHh-cCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLN 384 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~-~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~ 384 (394)
|||+++..|++++. ++|... ..++.+++-.+. +.|.+.++|+ ||+....+++|.+.++.|+++.
T Consensus 157 --iARAfa~~P~vLfADEPTGNLD~~T---g~~iaDLlF~lnre~G~TlVlVT-----HD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 157 --LARAFAGRPDVLFADEPTGNLDRAT---GDKIADLLFALNRERGTTLVLVT-----HDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred --HHHHhcCCCCEEeccCCCCCcchhH---HHHHHHHHHHHhhhcCceEEEEe-----CCHHHHHhhhheeeeecceecc
Confidence 99999999999998 788766 677777776665 4588888888 9999999999999999999975
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.8e-21 Score=178.34 Aligned_cols=191 Identities=23% Similarity=0.294 Sum_probs=136.0
Q ss_pred eeeeeecCC--cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 176 EVTYRFNDF--VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 176 ~~~~~~~~~--~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
++++.|++. ...++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~ 75 (233)
T cd03258 6 NVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--------PTSGS--VLVDGTDLTLLSGK 75 (233)
T ss_pred cceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEEcccCCHH
Confidence 345567651 01699999999887 999999999999999999999983 33333 2233332111
Q ss_pred -----cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 248 -----IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 -----~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
.....+.++....+.+.+...+..+. .....+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~----- 150 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVG----- 150 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHH-----
Confidence 12344455555545555554443211 1112334566777777754 577788 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.++ +.++|+++ |+.+.+..+ ++++.+++|+++
T Consensus 151 --la~al~~~p~lllLDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tvii~s-----H~~~~~~~~~d~i~~l~~G~i~ 220 (233)
T cd03258 151 --IARALANNPKVLLCDEATSALDPET---TQSILALLRDINRELGLTIVLIT-----HEMEVVKRICDRVAVMEKGEVV 220 (233)
T ss_pred --HHHHHhcCCCEEEecCCCCcCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999 888876 78888999888765 77888888 888888776 999999999998
Q ss_pred ecCcccee
Q 016165 384 NTPEVVRV 391 (394)
Q Consensus 384 ~~~~~~~v 391 (394)
..+...++
T Consensus 221 ~~~~~~~~ 228 (233)
T cd03258 221 EEGTVEEV 228 (233)
T ss_pred EecCHHHH
Confidence 87765544
No 56
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.84 E-value=2.9e-21 Score=176.44 Aligned_cols=186 Identities=20% Similarity=0.214 Sum_probs=133.6
Q ss_pred ceeeeeecCCc--CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---
Q 016165 175 LEVTYRFNDFV--SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--- 247 (394)
Q Consensus 175 l~~~~~~~~~~--~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--- 247 (394)
.++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 5 ~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~ 74 (218)
T cd03266 5 DALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--------PDAGF--ATVDGFDVVKEPA 74 (218)
T ss_pred EEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--------CCCce--EEECCEEcccCHH
Confidence 35566776521 1699999999887 999999999999999999999983 33333 2222222111
Q ss_pred --cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
.....+.++....+.+.+..++..+. ..+..+.+.++++.+++.+ .++.+| ||+||+. +
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------l 147 (218)
T cd03266 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVA-------I 147 (218)
T ss_pred HHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHH-------H
Confidence 12344455555445555555544211 1123445567788888754 677888 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
||+++.+|+++|+ .+|+.. ...+.++++++++++.++|+++ |+.+.+..+ ++++.+++|+++..
T Consensus 148 aral~~~p~illlDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~t-----H~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMA---TRALREFIRQLRALGKCILFST-----HIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhcCEEEEEECCEEeec
Confidence 9999999999999 888776 7888899998876678888888 888887776 99999999998754
No 57
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.84 E-value=3.5e-21 Score=178.86 Aligned_cols=188 Identities=19% Similarity=0.270 Sum_probs=130.5
Q ss_pred eeeeeec-CCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 176 EVTYRFN-DFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 176 ~~~~~~~-~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
++++.|+ + ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 6 NLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--------PSSGS--ILLEGTDITKLRGKK 73 (243)
T ss_pred eeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--------CCccE--EEECCEEhhhCCHHH
Confidence 4556776 4 5699999999887 999999999999999999999984 33333 2223322111
Q ss_pred ----cCCceeeeccCCCCCcccccccccch---------------hhhhhcCCccccccceeec----CCCCCc-hhhhh
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLS---------------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQR 303 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qr 303 (394)
.....++++....+...+...+..+. .....+.+.++++.+++.+ .+..+| ||+||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 11233344443333333333332110 1122334556677777643 577889 99999
Q ss_pred hhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhh
Q 016165 304 TQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALM 376 (394)
Q Consensus 304 v~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~ 376 (394)
+. +|++++.+|+++|+ .+|+.. ...+.++|+++.++ +.++|+++ |+.+.+.++ ++++.
T Consensus 154 v~-------la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiii~t-----H~~~~~~~~~d~v~~ 218 (243)
T TIGR02315 154 VA-------IARALAQQPDLILADEPIASLDPKT---SKQVMDYLKRINKEDGITVIINL-----HQVDLAKKYADRIVG 218 (243)
T ss_pred HH-------HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhcCeEEE
Confidence 99 99999999999999 888876 78888999888654 77788888 788887776 99999
Q ss_pred hccceeeecCccce
Q 016165 377 WSLGKVLNTPEVVR 390 (394)
Q Consensus 377 ~~~G~i~~~~~~~~ 390 (394)
+++|+++..+...+
T Consensus 219 l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 219 LKAGEIVFDGAPSE 232 (243)
T ss_pred EECCEEEecCCHHH
Confidence 99999988776544
No 58
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.2e-21 Score=182.91 Aligned_cols=189 Identities=19% Similarity=0.291 Sum_probs=135.3
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 29 ~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--------p~~G~--i~i~g~~~~~~~~~~~ 96 (269)
T cd03294 29 EILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--------PTSGK--VLIDGQDIAAMSRKEL 96 (269)
T ss_pred hhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCeE--EEECCEEccccChhhh
Confidence 34456766 5689999999887 999999999999999999999983 33333 2233322111
Q ss_pred ----cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
.....+.++....+...+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~------ 170 (269)
T cd03294 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVG------ 170 (269)
T ss_pred hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHH------
Confidence 01344555555444444554444211 1122334566777777754 678899 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ .+|+.. ...+.+++.++.+. +.++|+++ |+.+.+..+ ++++++++|+++.
T Consensus 171 -lAral~~~p~illLDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tiii~t-----H~~~~~~~~~d~v~~l~~G~i~~ 241 (269)
T cd03294 171 -LARALAVDPDILLMDEAFSALDPLI---RREMQDELLRLQAELQKTIVFIT-----HDLDEALRLGDRIAIMKDGRLVQ 241 (269)
T ss_pred -HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999 888876 78888999888654 77888887 888887776 9999999999987
Q ss_pred cCcccee
Q 016165 385 TPEVVRV 391 (394)
Q Consensus 385 ~~~~~~v 391 (394)
.+...++
T Consensus 242 ~g~~~~~ 248 (269)
T cd03294 242 VGTPEEI 248 (269)
T ss_pred eCCHHHH
Confidence 6655443
No 59
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=4.3e-21 Score=174.44 Aligned_cols=182 Identities=19% Similarity=0.245 Sum_probs=131.3
Q ss_pred eeeeeecCCcCcccccCCCCccc-EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----cC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-----IP 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~-~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-----~~ 249 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |.+++ +.+.+.+... ..
T Consensus 5 ~~~~~~~~--~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 5 NLTKRYGK--KRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTP--------PSSGT--IRIDGQDVLKQPQKLRR 72 (211)
T ss_pred EEEEEECC--EEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCC--------CCccE--EEECCCccccchHHHHh
Confidence 45667766 4699999998777 999999999999999999999883 33443 3334433221 12
Q ss_pred CceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
...+.++....+.+.+..++..+. ..+..+.+.++++.+++.+ .++.+| ||+||+. +|+++
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al 145 (211)
T cd03264 73 RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVG-------IAQAL 145 (211)
T ss_pred heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHH-------HHHHH
Confidence 334455555445555554443211 1122334566777777753 678889 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+.+|+++|+ .+|+.. ...+.++++++++ +.++++++ |+.+.+..+ ++++++++|+++..
T Consensus 146 ~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tii~vs-----H~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEE---RIRFRNLLSELGE-DRIVILST-----HIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred hcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHhC-CCEEEEEc-----CCHHHHHHhCCEEEEEECCEEEec
Confidence 999999999 888876 7888899998876 46777777 888888776 99999999998764
No 60
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=5.1e-21 Score=177.46 Aligned_cols=188 Identities=21% Similarity=0.341 Sum_probs=134.7
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 6 NVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--------ITSGD--LIVDGLKVNDPKVDER 73 (240)
T ss_pred eEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEECCcCChhHH
Confidence 45667765 5699999999887 999999999999999999999883 33333 2223322111
Q ss_pred --cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
.....+..+....+...+...+..+. ..+..+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~------- 146 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVA------- 146 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHH-------
Confidence 11344455544444444444443211 1122334566777777743 567788 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
+|++++.+|+++|+ ++|+.. ...+.++++.+++++.++|+++ |+.+++..+ ++++++++|+++..+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~G~i~~~g 218 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPEL---RHEVLKVMQDLAEEGMTMVIVT-----HEIGFAEKVASRLIFIDKGRIAEDG 218 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEeeC
Confidence 99999999999999 888876 7888899998876678888888 888888776 999999999998776
Q ss_pred ccce
Q 016165 387 EVVR 390 (394)
Q Consensus 387 ~~~~ 390 (394)
+..+
T Consensus 219 ~~~~ 222 (240)
T PRK09493 219 DPQV 222 (240)
T ss_pred CHHH
Confidence 6543
No 61
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.84 E-value=4.4e-21 Score=173.96 Aligned_cols=183 Identities=21% Similarity=0.256 Sum_probs=130.6
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IP 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~ 249 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... ..
T Consensus 5 ~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 5 DLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--------PDSGE--ITFDGKSYQKNIEALR 72 (208)
T ss_pred EEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--------CCceE--EEECCCcccchHHHHh
Confidence 45667765 5699999999877 999999999999999999999983 33333 2333332211 11
Q ss_pred CceeeeccCCCCCcccccccccchhh---hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcC
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLSKF---ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~ 321 (394)
...++++....+...+...+..+... ...+.+.++++.+++.+ .++.+| ||+||+. +|++++.+|
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p 145 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLG-------IALALLGNP 145 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHH-------HHHHHhcCC
Confidence 23344454444444444444321110 12234556677777643 578889 9999999 999999999
Q ss_pred CEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 322 dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+++|+ .+|+.. ...+.++++++++++.++++++ |+.+.+..+ ++++.+++|+++..
T Consensus 146 ~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~t-----H~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 146 DLLILDEPTNGLDPDG---IKELRELILSLRDQGITVLISS-----HLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred CEEEECCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEc-----CCHHHHHHhcCEEEEEECCEEEec
Confidence 99999 888876 7888899988877677888887 888888776 99999999998764
No 62
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.2e-21 Score=183.13 Aligned_cols=193 Identities=21% Similarity=0.287 Sum_probs=137.7
Q ss_pred ceeeeeecCCc---CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcc----
Q 016165 175 LEVTYRFNDFV---SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD---- 245 (394)
Q Consensus 175 l~~~~~~~~~~---~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~---- 245 (394)
-++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++..+ .+.+.
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--------p~~G~i~~--~g~~~~~~~ 75 (305)
T PRK13651 6 KNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--------PDTGTIEW--IFKDEKNKK 75 (305)
T ss_pred EEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--------CCCcEEEE--eceeccccc
Confidence 35566776421 2589999999887 999999999999999999999984 33333222 21110
Q ss_pred --------------------------cccCCceeeeccC-CCCCcccccccccch-------hhhhhcCCccccccceee
Q 016165 246 --------------------------RSIPGNTVAVQAD-MPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLV 291 (394)
Q Consensus 246 --------------------------~~~~~~~~~~~~~-~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~ 291 (394)
.......++++.. ..+...+...++.+. ..+..+.+.++++.+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred ccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 0011334555542 222223444443211 113345567778888874
Q ss_pred -c----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecC
Q 016165 292 -D----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (394)
Q Consensus 292 -D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~ 360 (394)
+ .+..+| ||+||+. +|++++.+|+++|+ .+|+.. ...+.++++++++.+.++|+++
T Consensus 156 ~~~~~~~~~~LSgGqkqrva-------lA~aL~~~P~lLlLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tiiivt--- 222 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVA-------LAGILAMEPDFLVFDEPTAGLDPQG---VKEILEIFDNLNKQGKTIILVT--- 222 (305)
T ss_pred hhhhhCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHCCCEEEEEe---
Confidence 3 678899 9999999 99999999999999 888876 7788899999887788888888
Q ss_pred CccCHHHHHHH-HhHhhhccceeeecCccceee
Q 016165 361 DQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 361 Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~ 392 (394)
|+.+.+.++ ++++++++|+++..+.+.+++
T Consensus 223 --Hd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 223 --HDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred --eCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 788887776 999999999999887776654
No 63
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.4e-21 Score=175.99 Aligned_cols=189 Identities=20% Similarity=0.272 Sum_probs=134.7
Q ss_pred ceeeeeecCCc--CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc--
Q 016165 175 LEVTYRFNDFV--SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-- 248 (394)
Q Consensus 175 l~~~~~~~~~~--~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-- 248 (394)
-++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+....
T Consensus 9 ~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~i~~~~~ 78 (233)
T PRK11629 9 DNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--------PTSGD--VIFNGQPMSKLSS 78 (233)
T ss_pred EeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEEcCcCCH
Confidence 35566775321 3589999999887 999999999999999999999983 33343 33333322111
Q ss_pred --------CCceeeeccCCCCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhccc
Q 016165 249 --------PGNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 249 --------~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~ 308 (394)
....+.++....+.+.+...+..+ ...+..+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~--- 155 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVA--- 155 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH---
Confidence 234455555544545555544421 11123345667778887754 567888 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.+ .+.++|+++ |+.+.+..+++++++++|++
T Consensus 156 ----la~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tvii~s-----H~~~~~~~~~~~~~l~~G~i 223 (233)
T PRK11629 156 ----IARALVNNPRLVLADEPTGNLDARN---ADSIFQLLGELNRLQGTAFLVVT-----HDLQLAKRMSRQLEMRDGRL 223 (233)
T ss_pred ----HHHHHhcCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHhhCEEEEEECCEE
Confidence 99999999999999 888876 7888899998865 478888888 77777777788889999999
Q ss_pred eecCcc
Q 016165 383 LNTPEV 388 (394)
Q Consensus 383 ~~~~~~ 388 (394)
+..+..
T Consensus 224 ~~~~~~ 229 (233)
T PRK11629 224 TAELSL 229 (233)
T ss_pred EEEecc
Confidence 875543
No 64
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.84 E-value=4.3e-21 Score=175.76 Aligned_cols=190 Identities=21% Similarity=0.283 Sum_probs=133.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 5 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 5 NLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--------PRSGS--IRFDGRDITGLPPHER 72 (222)
T ss_pred eEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEEcCCCCHHHH
Confidence 44567765 4689999999887 999999999999999999999983 33333 2233322111
Q ss_pred -cCCceeeeccCCCCCcccccccccchh-----hhhhcCCccccccc-eeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLSK-----FECSQMPHSLLEHI-TLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~l~~~-~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.....+.++....+.+.+...+..+.. ......+.++++.+ .+.+ .+..+| ||+||+. +||
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~-------lar 145 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLA-------IAR 145 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHH-------HHH
Confidence 113444555554455555544432110 11122233445555 2322 567788 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
+++.+|+++|+ .+|+.. ...+.++++++.+.+.++++++ |+.+.+..+ ++++.+++|+++..++..
T Consensus 146 al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (222)
T cd03224 146 ALMSRPKLLLLDEPSEGLAPKI---VEEIFEAIRELRDEGVTILLVE-----QNARFALEIADRAYVLERGRVVLEGTAA 217 (222)
T ss_pred HHhcCCCEEEECCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhccEEEEeeCCeEEEeCCHH
Confidence 99999999999 888876 8888999998876677888888 888887776 999999999999877665
Q ss_pred eee
Q 016165 390 RVY 392 (394)
Q Consensus 390 ~v~ 392 (394)
+++
T Consensus 218 ~~~ 220 (222)
T cd03224 218 ELL 220 (222)
T ss_pred HHh
Confidence 543
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=5.9e-21 Score=177.05 Aligned_cols=189 Identities=19% Similarity=0.240 Sum_probs=131.8
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 5 ~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 5 NLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--------PTSGS--VLIDGTDINKLKGKAL 73 (241)
T ss_pred eEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--------CCCce--EEECCEeccccCHhHH
Confidence 445566541 3589999999887 999999999999999999999983 33333 2233322211
Q ss_pred ---cCCceeeeccCCCCCcccccccccch---------------hhhhhcCCccccccceeec----CCCCCc-hhhhhh
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLS---------------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRT 304 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv 304 (394)
.....++++....+...+...+..+. .....+.+.++++.+++.+ .+..+| ||+||+
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 11334444444334434433333110 0122334556677777643 577888 999999
Q ss_pred hcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhh
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMW 377 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~ 377 (394)
. +|++++.+|+++|+ .+|+.. ...+.++++.+.++ +.++|+++ |+.+.+..+ ++++++
T Consensus 154 ~-------la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~t-----H~~~~~~~~~d~v~~l 218 (241)
T cd03256 154 A-------IARALMQQPKLILADEPVASLDPAS---SRQVMDLLKRINREEGITVIVSL-----HQVDLAREYADRIVGL 218 (241)
T ss_pred H-------HHHHHhcCCCEEEEeCccccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEE
Confidence 9 99999999999999 888876 78888999888654 77888888 888888866 999999
Q ss_pred ccceeeecCccce
Q 016165 378 SLGKVLNTPEVVR 390 (394)
Q Consensus 378 ~~G~i~~~~~~~~ 390 (394)
++|+++..++..+
T Consensus 219 ~~G~i~~~~~~~~ 231 (241)
T cd03256 219 KDGRIVFDGPPAE 231 (241)
T ss_pred ECCEEEeecCHHH
Confidence 9999987765543
No 66
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=4.1e-21 Score=176.98 Aligned_cols=181 Identities=20% Similarity=0.328 Sum_probs=135.1
Q ss_pred ccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC----------Cceeee
Q 016165 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP----------GNTVAV 255 (394)
Q Consensus 188 ~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~----------~~~~~~ 255 (394)
.+.+++|+++. +++|+|-+|||||||++++.++. .|+.++ +.+.+.+...+. .++.++
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi--------ept~G~--ilv~g~di~~~~~~~Lr~~Rr~~~sMVF 112 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI--------EPTRGE--ILVDGKDIAKLSAAELRELRRKKISMVF 112 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC--------CCCCce--EEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence 46677887776 99999999999999999999999 444444 344444433221 233355
Q ss_pred ccCCCCCcccccccc-c------chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCE
Q 016165 256 QADMPFSGLTTFGTA-F------LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (394)
Q Consensus 256 ~~~~~~~g~~~~~~~-~------~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dl 323 (394)
|..-.++..+...|. | +++.+.++++.++++.+++.+ .|..+| |++|||. +||+++.+||+
T Consensus 113 Q~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVG-------LARAla~~~~I 185 (386)
T COG4175 113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVG-------LARALANDPDI 185 (386)
T ss_pred hhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHH-------HHHHHccCCCE
Confidence 555555555555554 2 345678888999999999976 899999 8999999 99999999999
Q ss_pred EEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceeec
Q 016165 324 ILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 324 lLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~~ 393 (394)
+|+ .+|+.- ..+..+-|-+|++ ..+++++|+ ||.+++.++ +++.+|++|+++..|.+.++.+
T Consensus 186 lLMDEaFSALDPLI---R~~mQdeLl~Lq~~l~KTIvFit-----HDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 186 LLMDEAFSALDPLI---RTEMQDELLELQAKLKKTIVFIT-----HDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred EEecCchhhcChHH---HHHHHHHHHHHHHHhCCeEEEEe-----cCHHHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 999 677743 3333333333433 367889998 889999999 9999999999999998887653
No 67
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.84 E-value=4e-21 Score=181.15 Aligned_cols=190 Identities=17% Similarity=0.226 Sum_probs=135.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+++...
T Consensus 11 ~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 11 RGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--------PDHGE--ILFDGENIPAMSRSR 78 (269)
T ss_pred eCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEEccccChhh
Confidence 355667766 5689999999887 999999999999999999999983 33333 2223322111
Q ss_pred ----cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
.....+.++....+.+.+...+..+. .......+.++++.+++.+ .++.+| ||+||+.
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~----- 153 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAA----- 153 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-----
Confidence 11234455554445554554444211 1111233455677777754 678899 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.++ +.++|+++ |+.+.+..+ ++++++++|+++
T Consensus 154 --laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tiiivs-----H~~~~~~~~~d~v~~l~~G~i~ 223 (269)
T PRK11831 154 --LARAIALEPDLIMFDEPFVGQDPIT---MGVLVKLISELNSALGVTCVVVS-----HDVPEVLSIADHAYIVADKKIV 223 (269)
T ss_pred --HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHHHhcCcEEEEEe-----cCHHHHHHhhCEEEEEECCEEE
Confidence 99999999999999 888876 78888999988764 77888888 888888776 999999999998
Q ss_pred ecCcccee
Q 016165 384 NTPEVVRV 391 (394)
Q Consensus 384 ~~~~~~~v 391 (394)
..++..++
T Consensus 224 ~~g~~~~~ 231 (269)
T PRK11831 224 AHGSAQAL 231 (269)
T ss_pred EeCCHHHH
Confidence 77765543
No 68
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.83 E-value=6.2e-21 Score=178.19 Aligned_cols=189 Identities=21% Similarity=0.281 Sum_probs=134.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 5 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 5 DVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--------IDEGQ--IQVEGEQLYHMPGRNG 72 (252)
T ss_pred EEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEEccccccccc
Confidence 45667765 5699999999887 999999999999999999999983 33333 2222222110
Q ss_pred -------------cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec----CCCCCc-hhh
Q 016165 248 -------------IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD----TPGVLS-GEK 301 (394)
Q Consensus 248 -------------~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~ 301 (394)
.....++++....+...+...+..+. .....+.+.++++.+++.+ .+..+| ||+
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQ 152 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHH
Confidence 12344455554444444444443221 1122334566777777754 567788 999
Q ss_pred hhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhH
Q 016165 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGA 374 (394)
Q Consensus 302 qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~ 374 (394)
||+. +|++++.+|+++|+ .+|+.. ...+.++++++.++ +.++|+++ |+.+.+..+ +++
T Consensus 153 qrv~-------laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tiiivs-----H~~~~~~~~~d~i 217 (252)
T TIGR03005 153 QRVA-------IARALAMRPKVMLFDEVTSALDPEL---VGEVLNVIRRLASEHDLTMLLVT-----HEMGFAREFADRV 217 (252)
T ss_pred HHHH-------HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEe-----CCHHHHHHhcCEE
Confidence 9999 99999999999999 788876 77888899888764 77888888 888888775 999
Q ss_pred hhhccceeeecCcccee
Q 016165 375 LMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 375 ~~~~~G~i~~~~~~~~v 391 (394)
+++++|+++..+...++
T Consensus 218 ~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 218 CFFDKGRIVEQGKPDEI 234 (252)
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999887665443
No 69
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.1e-21 Score=187.52 Aligned_cols=189 Identities=19% Similarity=0.250 Sum_probs=137.8
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
++++++|++. . + +++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+..
T Consensus 4 ~~l~k~~~~~--~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--------p~~G~--I~~~g~~~~~~~~~~ 69 (352)
T PRK11144 4 LNFKQQLGDL--C-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--------PQKGR--IVLNGRVLFDAEKGI 69 (352)
T ss_pred EEEEEEeCCE--E-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEEcccccccc
Confidence 4777788762 2 2 78887766 999999999999999999999984 33333 222222211
Q ss_pred ----ccCCceeeeccCCCCCcccccccccch-hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 247 ----SIPGNTVAVQADMPFSGLTTFGTAFLS-KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 247 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
......++++....+..++..++..+. .....+.+.++++.+++.+ .++.+| ||+||+. +||+
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRva-------lara 142 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVA-------IGRA 142 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHH-------HHHH
Confidence 112345566665556555655554221 1122344566777777754 678899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ .+|+.. ...+.++|+.+.++ +.++|+++ |+.+++..+ ++++++++|+++..+++.
T Consensus 143 L~~~p~llLLDEPts~LD~~~---~~~l~~~L~~l~~~~g~tii~vT-----Hd~~~~~~~~d~i~~l~~G~i~~~g~~~ 214 (352)
T PRK11144 143 LLTAPELLLMDEPLASLDLPR---KRELLPYLERLAREINIPILYVS-----HSLDEILRLADRVVVLEQGKVKAFGPLE 214 (352)
T ss_pred HHcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCeEEEEe-----cCHHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 9999999999 888876 77888889888765 78888888 888888887 999999999999887776
Q ss_pred eee
Q 016165 390 RVY 392 (394)
Q Consensus 390 ~v~ 392 (394)
++|
T Consensus 215 ~i~ 217 (352)
T PRK11144 215 EVW 217 (352)
T ss_pred HHH
Confidence 654
No 70
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=6.6e-21 Score=177.70 Aligned_cols=200 Identities=20% Similarity=0.314 Sum_probs=150.5
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccC-C-CCCcCCCcccceeEEEEecCccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY-P-GAHIGPEPTTDRFVVVMSGVDDR- 246 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~-~-~~~vs~~p~t~r~~i~~~~~~~~- 246 (394)
+++|+++|...+....+++|+||++.. +++|+|++||||||+.++|+|+.. + +.+++ + .+.+.+++.-
T Consensus 4 v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~-----G--~i~f~g~~l~~ 76 (316)
T COG0444 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVG-----G--EILFDGKDLLS 76 (316)
T ss_pred EeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEee-----e--EEEECCccccc
Confidence 567777665544335699999999887 999999999999999999999884 1 11122 1 2445555321
Q ss_pred -------ccCCce--eeeccCCC-CCccccccccc---------c-hhhhhhcCCccccccceeec-------CCCCCc-
Q 016165 247 -------SIPGNT--VAVQADMP-FSGLTTFGTAF---------L-SKFECSQMPHSLLEHITLVD-------TPGVLS- 298 (394)
Q Consensus 247 -------~~~~~~--~~~~~~~~-~~g~~~~~~~~---------~-~~~~~~~~~~~~l~~~~l~D-------t~g~ls- 298 (394)
.+.|.. ..+|+... ++-+...+..+ . ...+..+++.++|+.++|.| .|..+|
T Consensus 77 l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSG 156 (316)
T COG0444 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSG 156 (316)
T ss_pred CCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCC
Confidence 223333 35555432 33222222221 1 12345667889999999976 799999
Q ss_pred hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-
Q 016165 299 GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV- 371 (394)
Q Consensus 299 Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~- 371 (394)
|++|||. ||.+++.+|+++|. .||+.. +.+++++|+++++ .+..+++|+ ||...+.++
T Consensus 157 GMrQRV~-------IAmala~~P~LlIADEPTTALDvt~---QaqIl~Ll~~l~~e~~~aiilIT-----HDl~vva~~a 221 (316)
T COG0444 157 GMRQRVM-------IAMALALNPKLLIADEPTTALDVTV---QAQILDLLKELQREKGTALILIT-----HDLGVVAEIA 221 (316)
T ss_pred cHHHHHH-------HHHHHhCCCCEEEeCCCcchhhHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhc
Confidence 8999999 99999999999999 899877 9999999999987 588889898 899999888
Q ss_pred HhHhhhccceeeecCccceeec
Q 016165 372 YGALMWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 372 ~~~~~~~~G~i~~~~~~~~v~~ 393 (394)
|++.+|+.|++++.|++.++|.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHhc
Confidence 9999999999999999888764
No 71
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.83 E-value=7.5e-21 Score=174.83 Aligned_cols=191 Identities=21% Similarity=0.280 Sum_probs=133.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... .....|..+. +.+.+++...
T Consensus 5 ~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~--i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 5 DLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLND---LIPGAPDEGE--VLLDGKDIYDLDVDVL 77 (227)
T ss_pred EEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCCeE--EEECCEEhhhcchHHH
Confidence 45667766 5699999999887 999999999999999999999871 1111223333 2333332211
Q ss_pred --cCCceeeeccCCCCCcccccccccchh--------hhhhcCCccccccceeec----C--CCCCc-hhhhhhhcccCh
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITLVD----T--PGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~D----t--~g~ls-Ge~qrv~~~~~~ 310 (394)
.....+.++....+ ..+...+..+.. .+..+.+.++++.+++.+ . +..+| ||+||+.
T Consensus 78 ~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~----- 151 (227)
T cd03260 78 ELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLC----- 151 (227)
T ss_pred HHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHH-----
Confidence 11234455554434 444444432110 012334566777777743 3 48899 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ .+|+.. ...+.++|+++.++ .++|+++ |+.+.+..+ ++++++++|+++.
T Consensus 152 --la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~-~tii~~s-----H~~~~~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 152 --LARALANEPEVLLLDEPTSALDPIS---TAKIEELIAELKKE-YTIVIVT-----HNMQQAARVADRTAFLLNGRLVE 220 (227)
T ss_pred --HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhhC-cEEEEEe-----ccHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999 888876 78888999988776 6777777 888887776 9999999999988
Q ss_pred cCccce
Q 016165 385 TPEVVR 390 (394)
Q Consensus 385 ~~~~~~ 390 (394)
.++..+
T Consensus 221 ~g~~~~ 226 (227)
T cd03260 221 FGPTEQ 226 (227)
T ss_pred ecCccc
Confidence 777654
No 72
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=8.8e-21 Score=172.03 Aligned_cols=180 Identities=20% Similarity=0.255 Sum_probs=134.9
Q ss_pred cCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEE----EEecCcccc----cCCceeeeccCCC
Q 016165 191 NSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVV----VMSGVDDRS----IPGNTVAVQADMP 260 (394)
Q Consensus 191 ~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i----~~~~~~~~~----~~~~~~~~~~~~~ 260 (394)
+++|..+. ++||.|++|||||||+|+|+|+.+ |..++..+ ..+...-.. .....|++|+.-.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--------PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL 87 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--------PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--------ccccEEEECCEEeecccCCcccChhhheeeeEeecccc
Confidence 34555554 999999999999999999999995 33333211 111111111 1246678888888
Q ss_pred CCcccccccccchh-hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeC
Q 016165 261 FSGLTTFGTAFLSK-FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFD 329 (394)
Q Consensus 261 ~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD 329 (394)
|+.++..+|..+.. .......+++...++|.. .|..+| ||+|||+ |+||+...|+++|+ .+|
T Consensus 88 FpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVA-------IGRALLt~P~LLLmDEPLaSLD 160 (352)
T COG4148 88 FPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVA-------IGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred ccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHH-------HHHHHhcCCCeeeecCchhhcc
Confidence 88888888763322 222333344444555543 899999 8999999 99999999999999 788
Q ss_pred CCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceeec
Q 016165 330 PHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 330 ~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~~ 393 (394)
... ..+++-+++.|.++ +.|++.|. |+.+++.+. |+++++.+|++.+.|...+++.
T Consensus 161 ~~R---K~EilpylERL~~e~~IPIlYVS-----HS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 161 LPR---KREILPYLERLRDEINIPILYVS-----HSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cch---hhHHHHHHHHHHHhcCCCEEEEe-----cCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 776 88899999999876 78999999 888899998 9999999999999988887764
No 73
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.6e-21 Score=178.29 Aligned_cols=189 Identities=19% Similarity=0.324 Sum_probs=132.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
.++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 9 ~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 9 SGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--------PTGGT--ILLRGQHIEGLPGHQ 76 (255)
T ss_pred eeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--------CCcce--EEECCEECCCCCHHH
Confidence 455667766 5699999999887 999999999999999999999984 33333 2222222111
Q ss_pred --cCCceeeeccCCCCCcccccccccchh----------------------hhhhcCCccccccceeec----CCCCCc-
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLSK----------------------FECSQMPHSLLEHITLVD----TPGVLS- 298 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~l~D----t~g~ls- 298 (394)
..+..++++....+.+.+...+..+.. .+..+.+.++++.+++.+ .++.+|
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAY 156 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCH
Confidence 012333344444444444433321100 011223455666777643 678889
Q ss_pred hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-
Q 016165 299 GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV- 371 (394)
Q Consensus 299 Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~- 371 (394)
||+||+. +|++++.+|+++|+ ++|+.. ...+.++|.+++++ +.++|+++ |+.+.+..+
T Consensus 157 G~~qrv~-------la~al~~~p~llllDEPt~~LD~~~---~~~l~~~L~~~~~~~~~tii~~s-----H~~~~~~~~~ 221 (255)
T PRK11300 157 GQQRRLE-------IARCMVTQPEILMLDEPAAGLNPKE---TKELDELIAELRNEHNVTVLLIE-----HDMKLVMGIS 221 (255)
T ss_pred HHHHHHH-------HHHHHhcCCCEEEEcCCccCCCHHH---HHHHHHHHHHHHhhcCCEEEEEe-----CCHHHHHHhC
Confidence 9999999 99999999999999 888876 78888999888765 77888888 888888776
Q ss_pred HhHhhhccceeeecCccce
Q 016165 372 YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 372 ~~~~~~~~G~i~~~~~~~~ 390 (394)
++++++++|+++..+...+
T Consensus 222 d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 222 DRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred CEEEEEECCeEEecCCHHH
Confidence 9999999999987766544
No 74
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.83 E-value=7.7e-21 Score=177.32 Aligned_cols=190 Identities=20% Similarity=0.296 Sum_probs=133.7
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+..
T Consensus 7 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 7 KNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--------PEAGT--IRVGDITIDTARSLS 74 (250)
T ss_pred eceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCeE--EEECCEEcccccccc
Confidence 345667765 5699999999887 999999999999999999999883 22232 222221110
Q ss_pred -------c-cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec----CCCCCc-hhhhhhh
Q 016165 247 -------S-IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQ 305 (394)
Q Consensus 247 -------~-~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~ 305 (394)
. .....++.+....+.+.+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHH
Confidence 0 11334445554444444444443211 1112334556677777643 578889 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL 379 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~ 379 (394)
+|++++.+|+++|+ ++|+.. ...+.++++++.+++.++|+++ |+.+.+..+ ++++++++
T Consensus 155 -------la~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~~tvi~~t-----H~~~~~~~~~d~i~~l~~ 219 (250)
T PRK11264 155 -------IARALAMRPEVILFDEPTSALDPEL---VGEVLNTIRQLAQEKRTMVIVT-----HEMSFARDVADRAIFMDQ 219 (250)
T ss_pred -------HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhcCEEEEEEC
Confidence 99999999999999 888876 7888889988877778888887 888888775 99999999
Q ss_pred ceeeecCcccee
Q 016165 380 GKVLNTPEVVRV 391 (394)
Q Consensus 380 G~i~~~~~~~~v 391 (394)
|+++..+...++
T Consensus 220 G~i~~~~~~~~~ 231 (250)
T PRK11264 220 GRIVEQGPAKAL 231 (250)
T ss_pred CEEEEeCCHHHH
Confidence 999877665443
No 75
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=7.5e-21 Score=177.93 Aligned_cols=189 Identities=20% Similarity=0.249 Sum_probs=132.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
+++++|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 7 ~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 7 NLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--------PQSGT--VFLGDKPISMLSSRQL 74 (255)
T ss_pred eEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--------CCCcE--EEECCEEhHHCCHHHH
Confidence 45667776 5699999999887 999999999999999999999883 33333 2223322111
Q ss_pred cCCceeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceee---c-CCCCCc-hhhhhhhcccChH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~---D-t~g~ls-Ge~qrv~~~~~~~ 311 (394)
.....++++....+.+.+...+..+. .....+.+.++++.+++. + .++.+| ||+||+.
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~------ 148 (255)
T PRK11231 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAF------ 148 (255)
T ss_pred hhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHH------
Confidence 11233444444333343333332110 011223345566666664 2 678889 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+|++++.+|+++|+ .+|+.. ...+.++++.+.+++.++++++ |+.+.+.++ ++++++++|+++..
T Consensus 149 -laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~l~~~~~tiii~t-----H~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 149 -LAMVLAQDTPVVLLDEPTTYLDINH---QVELMRLMRELNTQGKTVVTVL-----HDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred -HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEE-----CCHHHHHHhcCEEEEEECCeEEEE
Confidence 99999999999999 888876 7888899988876677888888 888888776 99999999999877
Q ss_pred Ccccee
Q 016165 386 PEVVRV 391 (394)
Q Consensus 386 ~~~~~v 391 (394)
++..++
T Consensus 220 ~~~~~~ 225 (255)
T PRK11231 220 GTPEEV 225 (255)
T ss_pred cCHHHh
Confidence 655443
No 76
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=8.3e-22 Score=190.72 Aligned_cols=232 Identities=19% Similarity=0.277 Sum_probs=161.9
Q ss_pred HHHHHHHHHHhcCCC-----CCccCCCCccCCCCCCCCCccccchhhhhcccCCCCCCCC-CCCCCCCCCCccccccccc
Q 016165 74 IAAMQLISLVQDGHQ-----VTHDLWNSDVDFQNLKPPAMEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSK 147 (394)
Q Consensus 74 ~~a~~Li~~~~~g~~-----~~~~l~~~~~~~~~~~lp~~~~l~~~i~a~t~~~~~~a~~-~~g~~~~~~~~~~~~~~~~ 147 (394)
++-+.|-+..+.|.+ -|.+...+++.|++++|.+.+++.++|.++|+.|+..|+. ++|++..+ ...|
T Consensus 138 vv~~~l~a~~~sg~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l---~~~~---- 210 (531)
T KOG1191|consen 138 VVVGVLTALGASGIPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALAL---CFGW---- 210 (531)
T ss_pred chhhHHHHhhhccCCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHHh---hhhH----
Confidence 344455555544333 3446666689999999999999999999999999999999 99976554 4459
Q ss_pred cCCcc--cchhhhhHHHHHHH----------HHHHhcCCceeeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHH
Q 016165 148 SSKKI--SMSSVTSIIDGLKR----------LYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIK 215 (394)
Q Consensus 148 ~~~~~--~~~~~e~~id~~~~----------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln 215 (394)
+..+ .++.+++.||+-++ .+...+. +.. ....+.+.+-..-.+..+..+||+|+||+|||||+|
T Consensus 211 -r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~-l~d--~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlN 286 (531)
T KOG1191|consen 211 -RKILIEALAGLEARIDFEEERPLEEIETVEIFIESLS-LLD--DVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLN 286 (531)
T ss_pred -HHHHHHHHhccceeechhhcCchhhccchhhhhHHHH-HHH--HHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHH
Confidence 7777 78999999984321 1111111 000 000000001111134555699999999999999999
Q ss_pred HHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCC
Q 016165 216 HLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPG 295 (394)
Q Consensus 216 ~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g 295 (394)
+|+..++ .+|++.|+|||+.+. ..+.++|. ++.+.||+|
T Consensus 287 aL~~~dr--sIVSpv~GTTRDaie-----------------a~v~~~G~----------------------~v~L~DTAG 325 (531)
T KOG1191|consen 287 ALSREDR--SIVSPVPGTTRDAIE-----------------AQVTVNGV----------------------PVRLSDTAG 325 (531)
T ss_pred HHhcCCc--eEeCCCCCcchhhhe-----------------eEeecCCe----------------------EEEEEeccc
Confidence 9999999 999999999998763 23345565 889999999
Q ss_pred CCc-----hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcC------------CCeEEEEEe
Q 016165 296 VLS-----GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH------------DDKIRVVLN 358 (394)
Q Consensus 296 ~ls-----Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~------------~~~viiv~n 358 (394)
++. -|+..|. .|+.-+..+|++++++|+.. ...++...+.+.+... ..+++++.|
T Consensus 326 iRe~~~~~iE~~gI~-------rA~k~~~~advi~~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~n 397 (531)
T KOG1191|consen 326 IREESNDGIEALGIE-------RARKRIERADVILLVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVAN 397 (531)
T ss_pred cccccCChhHHHhHH-------HHHHHHhhcCEEEEEecccc-cccccchHHHHHHHHhccceEEEeccccccceEEEec
Confidence 997 2777777 77888999999999999943 1233333333333221 247788999
Q ss_pred cCCccCH
Q 016165 359 KADQVDT 365 (394)
Q Consensus 359 K~Dl~~~ 365 (394)
|+|+...
T Consensus 398 k~D~~s~ 404 (531)
T KOG1191|consen 398 KSDLVSK 404 (531)
T ss_pred hhhccCc
Confidence 9998654
No 77
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.8e-21 Score=176.72 Aligned_cols=189 Identities=19% Similarity=0.258 Sum_probs=133.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 8 ~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 75 (241)
T PRK10895 8 NLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--------RDAGN--IIIDDEDISLLPLHAR 75 (241)
T ss_pred CcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEECCCCCHHHH
Confidence 45567765 5699999999887 999999999999999999999984 33333 2222222111
Q ss_pred -cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
..+..+..+....+.+.+...+.... ..+....+.++++.+++.+ .++.+| ||+||+. +
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------l 148 (241)
T PRK10895 76 ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVE-------I 148 (241)
T ss_pred HHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHH-------H
Confidence 11234444444444444444433111 1122334566777777644 567788 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
|++++.+|+++|+ .+|+.. ...+.++++.+.+++.++++++ |+.+.+... ++++.+++|+++..++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~g~tiii~s-----H~~~~~~~~~d~v~~l~~G~i~~~~~ 220 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPIS---VIDIKRIIEHLRDSGLGVLITD-----HNVRETLAVCERAYIVSQGHLIAHGT 220 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEE-----cCHHHHHHhcCEEEEEeCCeEEeeCC
Confidence 9999999999999 888766 7778888888877778888888 778777776 9999999999987766
Q ss_pred ccee
Q 016165 388 VVRV 391 (394)
Q Consensus 388 ~~~v 391 (394)
..++
T Consensus 221 ~~~~ 224 (241)
T PRK10895 221 PTEI 224 (241)
T ss_pred HHHH
Confidence 5443
No 78
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=4.7e-21 Score=170.76 Aligned_cols=189 Identities=23% Similarity=0.272 Sum_probs=149.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--ccCCc
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--SIPGN 251 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--~~~~~ 251 (394)
+++++|++ ..+++|++|++++ +.+++|+|||||||++++|+|.. .|..++ |.+.+++.. .....
T Consensus 7 ~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll--------e~~~G~--I~~~g~~~~~~~~~rI 74 (300)
T COG4152 7 GVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL--------EPTEGE--ITWNGGPLSQEIKNRI 74 (300)
T ss_pred cchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC--------CccCce--EEEcCcchhhhhhhhc
Confidence 45668888 6799999999998 99999999999999999999999 455555 444554432 22344
Q ss_pred eeeeccCCCCCcccccccc-c------chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 252 TVAVQADMPFSGLTTFGTA-F------LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~-~------~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
.+.+++.-.++.++..... + ++..+.......+|+++.+.+ ..-.+| |.+|++. +..++++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQ-------fisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQ-------FISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHH-------HHHHHhc
Confidence 5555665556555554443 2 234466777888999998876 455677 9999999 7889999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
+|+++|+ ++|+.+ .+.+.+.+.+++..|.+||+.. |.++.+++. |++.+++.|+.+-.|++.++
T Consensus 148 ePeLlILDEPFSGLDPVN---~elLk~~I~~lk~~GatIifSs-----H~Me~vEeLCD~llmL~kG~~V~~G~v~~i 217 (300)
T COG4152 148 EPELLILDEPFSGLDPVN---VELLKDAIFELKEEGATIIFSS-----HRMEHVEELCDRLLMLKKGQTVLYGTVEDI 217 (300)
T ss_pred CCCEEEecCCccCCChhh---HHHHHHHHHHHHhcCCEEEEec-----chHHHHHHHhhhhheecCCceEEeccHHHH
Confidence 9999999 999988 7888889999999999999988 888899887 99999999999988877654
No 79
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.83 E-value=8.4e-21 Score=177.48 Aligned_cols=190 Identities=21% Similarity=0.244 Sum_probs=133.5
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-c
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-I 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-~ 248 (394)
++--++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .
T Consensus 13 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--------p~~G~--i~~~g~~~~~~~ 80 (257)
T PRK11247 13 LLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--------PSAGE--LLAGTAPLAEAR 80 (257)
T ss_pred EEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCeE--EEECCEEHHHhh
Confidence 334456677876 5699999999877 999999999999999999999983 33333 2222221111 1
Q ss_pred CCceeeeccCCCCCcccccccccchh-hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCC
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLSK-FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~d 322 (394)
....+..+....+...+...+..+.. ....+.+.++++.+++.+ .++.+| ||+||+. +|++++.+|+
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~-------laraL~~~p~ 153 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVA-------LARALIHRPG 153 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHhcCCC
Confidence 12344455544444444444432111 111234556677777754 678899 9999999 9999999999
Q ss_pred EEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 323 LILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 323 llLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
++|+ .+|+.. ...+.++|+++.+ .+.++|+++ |+.+.+..+ ++++++++|+++..+.+
T Consensus 154 lllLDEPt~~LD~~~---~~~l~~~L~~~~~~~~~tviivs-----Hd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 154 LLLLDEPLGALDALT---RIEMQDLIESLWQQHGFTVLLVT-----HDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred EEEEeCCCCCCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 9999 788876 7788888888754 477888888 888887776 99999999999876543
No 80
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=8.7e-21 Score=173.57 Aligned_cols=188 Identities=22% Similarity=0.312 Sum_probs=132.0
Q ss_pred eeeeeecCCc--CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-cCC
Q 016165 176 EVTYRFNDFV--SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-IPG 250 (394)
Q Consensus 176 ~~~~~~~~~~--~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-~~~ 250 (394)
++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+... ...
T Consensus 5 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~ 74 (220)
T cd03293 5 NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--------PTSGE--VLVDGEPVTGPGPD 74 (220)
T ss_pred EEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEECccccCc
Confidence 4455665411 3589999999887 999999999999999999999983 33333 2233322211 123
Q ss_pred ceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHh
Q 016165 251 NTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (394)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~ 318 (394)
..++++....+...+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+. +|++++
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~-------la~al~ 147 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVA-------LARALA 147 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH-------HHHHHH
Confidence 44455554444444444443211 1122344567777777754 678899 9999999 999999
Q ss_pred hcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhc--cceeeecCcc
Q 016165 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWS--LGKVLNTPEV 388 (394)
Q Consensus 319 ~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~--~G~i~~~~~~ 388 (394)
.+|+++|+ ++|+.. ...+.++++++.+ .+.++++++ |+.+.+..+ ++++.++ +|+++...++
T Consensus 148 ~~p~lllLDEPt~~LD~~~---~~~~~~~l~~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 148 VDPDVLLLDEPFSALDALT---REQLQEELLDIWRETGKTVLLVT-----HDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred cCCCEEEECCCCCCCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----cCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999 888876 7888899988854 477888887 888877776 8999998 7999876655
No 81
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.83 E-value=9.9e-21 Score=172.41 Aligned_cols=179 Identities=22% Similarity=0.282 Sum_probs=126.7
Q ss_pred eeeeeec-CCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 176 EVTYRFN-DFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 176 ~~~~~~~-~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
++++.|+ + ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--------~~~G~--i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 6 NVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--------PSRGQ--VRIAGEDVNRLRGRQ 73 (214)
T ss_pred eeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEEcccCCHHH
Confidence 4455673 3 4699999999887 999999999999999999999983 33333 2223322211
Q ss_pred ----cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
.....+..+....+...+...+..+. .....+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~------ 147 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVA------ 147 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH------
Confidence 11334455554444444444443211 1122334566777777754 567889 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++++++.++++++ |+.+++..+ ++++++++|+
T Consensus 148 -la~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~t-----H~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 -IARAIVNSPPLLLADEPTGNLDPDL---SERILDLLKRLNKRGTTVIVAT-----HDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred -HHHHHhCCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhcCEEEEecCCC
Confidence 99999999999999 888876 7888899998876678888888 888888776 8888888774
No 82
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=9.1e-21 Score=172.16 Aligned_cols=183 Identities=21% Similarity=0.263 Sum_probs=130.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--ccCCc
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--SIPGN 251 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--~~~~~ 251 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+.. .....
T Consensus 5 ~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~i 72 (210)
T cd03269 5 NVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--------PDSGE--VLFDGKPLDIAARNRI 72 (210)
T ss_pred EEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCCchhHHHHccE
Confidence 44567765 5689999999887 999999999999999999999883 33333 333333221 11233
Q ss_pred eeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 252 TVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
.+..+....+.+.+...+..+. .....+.+.++++.+++.+ .+..+| ||+||+. +|++++.
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~ 145 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQ-------FIAAVIH 145 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHH-------HHHHHhc
Confidence 4444554444444544443211 1122334566777777643 567788 9999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+|+++|+ .+|+.. ...+.++++.+.+++.++++++ |+.+.+..+ ++++.+++|+++..
T Consensus 146 ~p~~lllDEP~~~LD~~~---~~~~~~~l~~~~~~~~tii~~s-----H~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 146 DPELLILDEPFSGLDPVN---VELLKDVIRELARAGKTVILST-----HQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred CCCEEEEeCCCcCCCHHH---HHHHHHHHHHHHHCCCEEEEEC-----CCHHHHHHhhhEEEEEeCCEEEec
Confidence 9999999 888876 7788889988876677777777 788887775 99999999998754
No 83
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=8.6e-21 Score=176.13 Aligned_cols=188 Identities=17% Similarity=0.218 Sum_probs=135.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+..
T Consensus 6 ~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 6 NGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--------PRSGT--LNIAGNHFDFSKTPS 73 (242)
T ss_pred EeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEecccccccc
Confidence 355667876 5699999999887 999999999999999999999983 34444 333333210
Q ss_pred ------ccCCceeeeccCCCCCcccccccccc--------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcc
Q 016165 247 ------SIPGNTVAVQADMPFSGLTTFGTAFL--------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 247 ------~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~ 307 (394)
......+..+....+.+.+..++... ...+..+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~-- 151 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA-- 151 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH--
Confidence 01234455555554555555444321 01112334556667777643 577888 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+||+++.+|+++|+ ++|+.. ...+.++++++.+.+.++++++ |+.+.+..+ ++++++.+|+
T Consensus 152 -----laral~~~p~llilDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~s-----h~~~~~~~~~d~i~~l~~g~ 218 (242)
T PRK11124 152 -----IARALMMEPQVLLFDEPTAALDPEI---TAQIVSIIRELAETGITQVIVT-----HEVEVARKTASRVVYMENGH 218 (242)
T ss_pred -----HHHHHhcCCCEEEEcCCCCcCCHHH---HHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhcCEEEEEECCE
Confidence 99999999999999 888766 7788889988876678888888 888888775 9999999999
Q ss_pred eeecCccc
Q 016165 382 VLNTPEVV 389 (394)
Q Consensus 382 i~~~~~~~ 389 (394)
++..++..
T Consensus 219 i~~~~~~~ 226 (242)
T PRK11124 219 IVEQGDAS 226 (242)
T ss_pred EEEeCCHH
Confidence 98766543
No 84
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.83 E-value=7.8e-21 Score=171.99 Aligned_cols=182 Identities=18% Similarity=0.263 Sum_probs=126.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc---ccCC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---SIPG 250 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---~~~~ 250 (394)
++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+.. ....
T Consensus 4 ~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 4 NISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--------ESSGS--ILLNGKPIKAKERRKS 72 (205)
T ss_pred cEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEEhhhHHhhcc
Confidence 345567542 3589999998877 999999999999999999999983 33333 222332211 1113
Q ss_pred ceeeeccCC-CCCcccccccccchh-h--hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcC
Q 016165 251 NTVAVQADM-PFSGLTTFGTAFLSK-F--ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (394)
Q Consensus 251 ~~~~~~~~~-~~~g~~~~~~~~~~~-~--~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~ 321 (394)
..+.++... .+...+..++..+.. . ...+.+.++++.+++.+ .++.+| ||+||+. +||+++.+|
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p 145 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLA-------IAAALLSGK 145 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHH-------HHHHHHhCC
Confidence 344444431 122223344332111 0 11234556777777754 678889 9999999 999999999
Q ss_pred CEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 322 dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+++|+ .+|+.. ...+.++++++++++.++++++ |+.+++..+ ++++++++|+++
T Consensus 146 ~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~s-----H~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKN---MERVGELIRELAAQGKAVIVIT-----HDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEC
Confidence 99999 888876 7888899998876678888888 888888776 999999999874
No 85
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.83 E-value=8e-21 Score=173.78 Aligned_cols=189 Identities=21% Similarity=0.209 Sum_probs=131.1
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----c
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-----I 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-----~ 248 (394)
++++.|++....++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+... .
T Consensus 5 ~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 5 NLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--------PTSGT--AYINGYSIRTDRKAAR 74 (220)
T ss_pred eeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEecccchHHHh
Confidence 44556754213589999999887 999999999999999999999984 33333 2222222110 1
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....++++....+...+...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+. +|++
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~a 147 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLS-------LAIA 147 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHH-------HHHH
Confidence 1233444444334344444433111 1122334566777777754 568889 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
++.+|+++|+ .+|+.. ...+.++++.+.+ +.++++++ |+.+.+..+ ++++.+++|+++..++..+
T Consensus 148 l~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tii~~s-----H~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPAS---RRAIWDLILEVRK-GRSIILTT-----HSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHH---HHHHHHHHHHHhc-CCEEEEEc-----CCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999 888776 7788888988876 46677777 888888776 9999999999988776543
No 86
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.83 E-value=4.3e-21 Score=187.92 Aligned_cols=187 Identities=18% Similarity=0.250 Sum_probs=142.1
Q ss_pred eeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecC----cccc----
Q 016165 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGV----DDRS---- 247 (394)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~----~~~~---- 247 (394)
..+|+. ..++++++|++.+ +++|+|+||||||||+++|+|.. .|..++ +.+.++ +...
T Consensus 31 ~~~~g~--~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~--------~p~~G~--I~idG~~~~~~i~~~~~~ 98 (382)
T TIGR03415 31 LDETGL--VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN--------PVSRGS--VLVKDGDGSIDVANCDAA 98 (382)
T ss_pred HHhhCC--EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCCcE--EEECCEecccccccCCHH
Confidence 345666 5589999999887 99999999999999999999998 344444 333332 1110
Q ss_pred ------cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccC
Q 016165 248 ------IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 248 ------~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~ 309 (394)
.....++++....++..+..++..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 99 ~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~---- 174 (382)
T TIGR03415 99 TLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVG---- 174 (382)
T ss_pred HHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH----
Confidence 12456677776666666666665321 1233456678888888854 788899 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ .+|+.. ..++.+.+.++.++ +.++++++ |+.+++.++ +++++|++|++
T Consensus 175 ---LARALa~~P~ILLlDEPts~LD~~~---r~~l~~~L~~l~~~~~~TII~iT-----Hdl~e~~~l~DrI~vl~~G~i 243 (382)
T TIGR03415 175 ---LARAFAMDADILLMDEPFSALDPLI---RTQLQDELLELQAKLNKTIIFVS-----HDLDEALKIGNRIAIMEGGRI 243 (382)
T ss_pred ---HHHHHhcCCCEEEEECCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999 888876 78888888888764 78888888 888888887 99999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..+++.++
T Consensus 244 v~~g~~~ei 252 (382)
T TIGR03415 244 IQHGTPEEI 252 (382)
T ss_pred EEecCHHHH
Confidence 988776654
No 87
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=1.1e-20 Score=175.28 Aligned_cols=188 Identities=23% Similarity=0.331 Sum_probs=134.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 7 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------p~~G~--i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 7 GLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--------PDEGS--VLFGGTDLTGLPEHQI 74 (242)
T ss_pred eeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCCe--EEECCeecCCCCHHHH
Confidence 45667765 4699999999887 999999999999999999999984 33333 2233322211
Q ss_pred -cCCceeeeccCCCCCcccccccccch---------------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhc
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS---------------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQR 306 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~ 306 (394)
..+..+.++....+.+.+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~- 153 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLE- 153 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-
Confidence 11344455554445554444433111 0112334566777777653 577888 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+||+++.+|+++|+ .+|+.. ...+.++++.+.+ +.++|+++ |+.+.+..+ ++++++++|
T Consensus 154 ------laral~~~p~~lllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tii~~s-----H~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 154 ------IGMLLMQDPKLLLLDEPVAGMTDEE---TEKTAELLKSLAG-KHSVVVVE-----HDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred ------HHHHHhcCCCEEEecCCccCCCHHH---HHHHHHHHHHHhc-CCEEEEEE-----CCHHHHHHhCCEEEEEECC
Confidence 99999999999999 888876 7888899998866 57777777 888888776 999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..++..++
T Consensus 219 ~~~~~~~~~~~ 229 (242)
T TIGR03411 219 SVLAEGSLDQV 229 (242)
T ss_pred eEEeeCCHHHH
Confidence 99877665543
No 88
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=8.7e-21 Score=175.55 Aligned_cols=190 Identities=19% Similarity=0.240 Sum_probs=132.7
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+....
T Consensus 9 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------p~~G~--i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 9 DKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--------ATSGR--IVFDGKDITDWQTAK 76 (237)
T ss_pred EeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--------CCCce--EEECCEecCCCCHHH
Confidence 355667765 5699999999887 999999999999999999999983 33333 23333322111
Q ss_pred ---CCceeeeccCCCCCcccccccccch-----hhhhhcCCccccccc-eeec----CCCCCc-hhhhhhhcccChHHHH
Q 016165 249 ---PGNTVAVQADMPFSGLTTFGTAFLS-----KFECSQMPHSLLEHI-TLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (394)
Q Consensus 249 ---~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~-~l~D----t~g~ls-Ge~qrv~~~~~~~~ia 314 (394)
....+..+....+.+.+...+.... .....+.+.++++.+ .+.+ .+..+| ||+||+. +|
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~-------la 149 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLA-------IG 149 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHH-------HH
Confidence 1234445554444444444443211 011122233344444 2332 667788 9999999 99
Q ss_pred HHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 315 ral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
++++.+|+++|+ .+|+.. ...+.++++++.+++.++|+++ |+.+++.++ ++++++++|+++..+++
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~G~i~~~~~~ 221 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPII---IQQIFDTIEQLREQGMTIFLVE-----QNANQALKLADRGYVLENGHVVLEDTG 221 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CcHHHHHhhCCEEEEEeCCEEEeeCCH
Confidence 999999999999 888876 7888899998877778888877 888888777 99999999999987776
Q ss_pred cee
Q 016165 389 VRV 391 (394)
Q Consensus 389 ~~v 391 (394)
.++
T Consensus 222 ~~~ 224 (237)
T PRK11614 222 DAL 224 (237)
T ss_pred HHH
Confidence 554
No 89
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.83 E-value=6e-21 Score=189.00 Aligned_cols=186 Identities=18% Similarity=0.275 Sum_probs=148.8
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcc-------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD------- 245 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~------- 245 (394)
-++++.|+. ..+|++++|++.+ +++++|.||||||||+|+|+|.+ .|..+. +.++++..
T Consensus 12 ~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~--------~p~~G~--I~~~G~~~~~~sp~~ 79 (500)
T COG1129 12 RGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY--------PPDSGE--ILIDGKPVAFSSPRD 79 (500)
T ss_pred ecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc--------cCCCce--EEECCEEccCCCHHH
Confidence 455678888 5799999999988 99999999999999999999999 344454 33444432
Q ss_pred cccCCceeeeccCCCCCcccccccccchh-----------hhhhcCCcccccccee---ec-CCCCCc-hhhhhhhcccC
Q 016165 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSK-----------FECSQMPHSLLEHITL---VD-TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 246 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l---~D-t~g~ls-Ge~qrv~~~~~ 309 (394)
..-.|...+.|+...++.++..+|+|+.+ ....+.+.++|..+++ .| ..+.+| ||+|.|+
T Consensus 80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~Ve---- 155 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVE---- 155 (500)
T ss_pred HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHH----
Confidence 22347788888888888888877776432 2455667777877776 33 678889 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
|||++..+++++|| .|+... .+.+++++++++++|..+|+|. |..+++.++ |++.++++|+.+
T Consensus 156 ---IArAl~~~arllIlDEPTaaLt~~E---~~~Lf~~ir~Lk~~Gv~ii~IS-----Hrl~Ei~~i~DritVlRDG~~v 224 (500)
T COG1129 156 ---IARALSFDARVLILDEPTAALTVKE---TERLFDLIRRLKAQGVAIIYIS-----HRLDEVFEIADRITVLRDGRVV 224 (500)
T ss_pred ---HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEc-----CcHHHHHHhcCEEEEEeCCEEe
Confidence 99999999999998 555544 6778899999999999999999 677888888 999999999998
Q ss_pred ecCc
Q 016165 384 NTPE 387 (394)
Q Consensus 384 ~~~~ 387 (394)
.+.+
T Consensus 225 ~~~~ 228 (500)
T COG1129 225 GTRP 228 (500)
T ss_pred eecc
Confidence 7665
No 90
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=6.4e-21 Score=185.43 Aligned_cols=188 Identities=23% Similarity=0.301 Sum_probs=147.0
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCc------
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVD------ 244 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~------ 244 (394)
+..+.++.|++ -.+.++++|++.+ +.||+|+||||||||+|+|.|.+ .|..++. .+.|+.
T Consensus 6 ~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~--------~P~~GeI--~v~G~~v~~~sP 73 (501)
T COG3845 6 EMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY--------QPDSGEI--RVDGKEVRIKSP 73 (501)
T ss_pred EEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc--------cCCcceE--EECCEEeccCCH
Confidence 33456778887 4599999999988 99999999999999999999999 4555553 233332
Q ss_pred -ccccCCceeeeccCCCCCcccccccccchh----------hhhhcCCccccccceee-c---CCCCCc-hhhhhhhccc
Q 016165 245 -DRSIPGNTVAVQADMPFSGLTTFGTAFLSK----------FECSQMPHSLLEHITLV-D---TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~-D---t~g~ls-Ge~qrv~~~~ 308 (394)
.....|...+.|....++.++..+|+.+.. ....+.+.++.+.+++. | ..+.+| |++|||+
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVE--- 150 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVE--- 150 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHH---
Confidence 233447888889988889988888874322 13455566666777763 3 677788 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
|.++++++|+++|| +|-+.. .++++++++.++++|++||+|+ |..+++..+ |++.+++.|++
T Consensus 151 ----IlKaLyr~a~iLILDEPTaVLTP~E---~~~lf~~l~~l~~~G~tIi~IT-----HKL~Ev~~iaDrvTVLR~Gkv 218 (501)
T COG3845 151 ----ILKALYRGARLLILDEPTAVLTPQE---ADELFEILRRLAAEGKTIIFIT-----HKLKEVMAIADRVTVLRRGKV 218 (501)
T ss_pred ----HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----ccHHHHHHhhCeeEEEeCCeE
Confidence 99999999999999 666555 6778899999999999999999 556788887 99999999998
Q ss_pred eecCc
Q 016165 383 LNTPE 387 (394)
Q Consensus 383 ~~~~~ 387 (394)
+..-+
T Consensus 219 vgt~~ 223 (501)
T COG3845 219 VGTVD 223 (501)
T ss_pred Eeeec
Confidence 75433
No 91
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.83 E-value=1.1e-20 Score=176.97 Aligned_cols=192 Identities=19% Similarity=0.298 Sum_probs=137.8
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc----
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---- 246 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---- 246 (394)
+--++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+..
T Consensus 7 ~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--------~~~G~--i~~~g~~~~~~~~ 74 (257)
T PRK10619 7 NVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--------PSEGS--IVVNGQTINLVRD 74 (257)
T ss_pred EEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCeE--EEECCEEcccccc
Confidence 33455667776 5699999999887 999999999999999999999983 33333 222222111
Q ss_pred ---------------ccCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec-----CCCCCc
Q 016165 247 ---------------SIPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD-----TPGVLS 298 (394)
Q Consensus 247 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D-----t~g~ls 298 (394)
......+..+....+.+.+..++.... .....+.+.++++.+++.+ .+..+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 154 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS 154 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 012345555555545455555554211 1122344566777777743 467788
Q ss_pred -hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-
Q 016165 299 -GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV- 371 (394)
Q Consensus 299 -Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~- 371 (394)
||+||+. +||+++.+|+++|+ .+|+.. ...+.++++++.+.+.++++++ |+.+.+..+
T Consensus 155 ~G~~qrv~-------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~l~~~g~tiiivs-----H~~~~~~~~~ 219 (257)
T PRK10619 155 GGQQQRVS-------IARALAMEPEVLLFDEPTSALDPEL---VGEVLRIMQQLAEEGKTMVVVT-----HEMGFARHVS 219 (257)
T ss_pred HHHHHHHH-------HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhc
Confidence 9999999 99999999999999 888876 7888899998877788888888 888888876
Q ss_pred HhHhhhccceeeecCcccee
Q 016165 372 YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 372 ~~~~~~~~G~i~~~~~~~~v 391 (394)
++++++++|+++..+...++
T Consensus 220 d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 220 SHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred CEEEEEECCEEEEeCCHHHh
Confidence 99999999999877655443
No 92
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.83 E-value=1e-20 Score=172.83 Aligned_cols=182 Identities=23% Similarity=0.265 Sum_probs=127.1
Q ss_pred eeeeeecCCc--CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---
Q 016165 176 EVTYRFNDFV--SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI--- 248 (394)
Q Consensus 176 ~~~~~~~~~~--~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~--- 248 (394)
++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+....
T Consensus 5 ~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--------~~~G~--i~~~g~~~~~~~~~ 74 (218)
T cd03255 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--------PTSGE--VRVDGTDISKLSEK 74 (218)
T ss_pred eeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--------CCcee--EEECCEehhhcchh
Confidence 4455675421 3589999999887 999999999999999999999983 33333 22333222111
Q ss_pred -------CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccC
Q 016165 249 -------PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 249 -------~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~ 309 (394)
....+..+....+.+.+..++..+. .....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~---- 150 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVA---- 150 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHH----
Confidence 1344455554444454544443211 1112334566777777753 578889 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.+ .+.++|+++ |+.+.+..+++++++++|++
T Consensus 151 ---la~al~~~p~lllLDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tii~~s-----H~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 151 ---IARALANDPKIILADEPTGNLDSET---GKEVMELLRELNKEAGTTIVVVT-----HDPELAEYADRIIELRDGKI 218 (218)
T ss_pred ---HHHHHccCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCeEEEEE-----CCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999 888876 7888899999876 478888888 77777663488999988874
No 93
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.83 E-value=6.6e-21 Score=176.26 Aligned_cols=188 Identities=18% Similarity=0.245 Sum_probs=131.6
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----c
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-----I 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-----~ 248 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .
T Consensus 6 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------p~~G~--i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 6 GLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--------AQEGQ--ISVAGHDLRRAPRAAL 73 (236)
T ss_pred eeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--------CCceE--EEECCEEcccCChhhh
Confidence 45567765 5699999999887 999999999999999999999983 33333 2222322111 1
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....+.++....+...+...+.... .....+.+.++++.+++.+ .++.+| ||+||+. +|++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~-------lara 146 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVE-------IARA 146 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHH
Confidence 2334444544333344444443111 1112334566777777643 578889 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCccce
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~ 390 (394)
++.+|+++|+ ++|+.. ...+.++++++.+ ++.++++++ |+.+.+..+++++++++|+++..++..+
T Consensus 147 l~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tiii~s-----H~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPAS---RAAIVAHVRALCRDQGLSVLWAT-----HLVDEIEADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----cChhhHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999 888876 7888899988864 477888888 6676665469999999999987766543
No 94
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.5e-20 Score=164.38 Aligned_cols=194 Identities=22% Similarity=0.310 Sum_probs=134.5
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCC
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPG 250 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~ 250 (394)
+.-|+++...+ +.++++++++..+ +++|+||||||||||++.|+|.. .|..++ +.+.+.+...++.
T Consensus 3 ~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel--------~p~~G~--v~~~g~~l~~~~~ 70 (259)
T COG4559 3 RAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL--------SPDSGE--VTLNGVPLNSWPP 70 (259)
T ss_pred eeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc--------CCCCCe--EeeCCcChhhCCH
Confidence 34466667766 7899999999888 99999999999999999999998 344444 4445555444432
Q ss_pred ce------eeecc-CCCCCc----ccccccccc--hhh--hhhcCCccccccceeecC----CCCCc-hhhhhhhcccCh
Q 016165 251 NT------VAVQA-DMPFSG----LTTFGTAFL--SKF--ECSQMPHSLLEHITLVDT----PGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 251 ~~------~~~~~-~~~~~g----~~~~~~~~~--~~~--~~~~~~~~~l~~~~l~Dt----~g~ls-Ge~qrv~~~~~~ 310 (394)
.. +..|. ...|.. +...+..-. .+. ++.+.+.+++...++... .-.+| ||+|||.
T Consensus 71 ~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVq----- 145 (259)
T COG4559 71 EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQ----- 145 (259)
T ss_pred HHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHH-----
Confidence 11 11111 111211 111111101 111 344445666666666543 33456 8999999
Q ss_pred HHHHHHHhhcC------CEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc
Q 016165 311 TGVTSWFAAKC------DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS 378 (394)
Q Consensus 311 ~~iaral~~~~------dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~ 378 (394)
+||.+++-. ..+++ .+|+.+ +...+.+.+++.+++..|+.|+ ||.+....+ |++++|+
T Consensus 146 --lARvLaQl~~~v~~~r~L~LDEPtsaLDi~H---Q~~tl~laR~la~~g~~V~~VL-----HDLNLAA~YaDrivll~ 215 (259)
T COG4559 146 --LARVLAQLWPPVPSGRWLFLDEPTSALDIAH---QHHTLRLARQLAREGGAVLAVL-----HDLNLAAQYADRIVLLH 215 (259)
T ss_pred --HHHHHHHccCCCCCCceEEecCCccccchHH---HHHHHHHHHHHHhcCCcEEEEE-----ccchHHHHhhheeeeee
Confidence 999998643 34555 777777 8888999999999999999998 778788777 9999999
Q ss_pred cceeeecCccceeec
Q 016165 379 LGKVLNTPEVVRVYI 393 (394)
Q Consensus 379 ~G~i~~~~~~~~v~~ 393 (394)
+|+++.+|.+.++++
T Consensus 216 ~Grv~a~g~p~~vlt 230 (259)
T COG4559 216 QGRVIASGSPQDVLT 230 (259)
T ss_pred CCeEeecCCHHHhcC
Confidence 999999999988875
No 95
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.2e-20 Score=177.61 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=134.6
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--- 247 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--- 247 (394)
.-.++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 9 ~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--------~~~G~--i~~~g~~~~~~~~ 76 (265)
T PRK10253 9 RGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--------PAHGH--VWLDGEHIQHYAS 76 (265)
T ss_pred EEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--------CCCcE--EEECCEEhhhCCH
Confidence 34456678876 5699999999887 999999999999999999999983 33333 2233322111
Q ss_pred ---cCCceeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhccc
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~ 308 (394)
.....+.++....+.+.+...+.... .....+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~--- 153 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAW--- 153 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHH---
Confidence 11234444444333333333332110 0112234556677777643 677888 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+||+++.+|+++|+ .+|+.. ...+.++|.++.+. +.++|+++ |+.+.+..+ ++++.+++|+
T Consensus 154 ----laral~~~p~llllDEPt~gLD~~~---~~~l~~~L~~l~~~~~~tiii~t-----H~~~~~~~~~d~i~~l~~G~ 221 (265)
T PRK10253 154 ----IAMVLAQETAIMLLDEPTTWLDISH---QIDLLELLSELNREKGYTLAAVL-----HDLNQACRYASHLIALREGK 221 (265)
T ss_pred ----HHHHHhcCCCEEEEeCccccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCE
Confidence 99999999999999 888876 78888999888764 77888888 888888776 9999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..++..++
T Consensus 222 i~~~g~~~~~ 231 (265)
T PRK10253 222 IVAQGAPKEI 231 (265)
T ss_pred EEEeCCHHHH
Confidence 9877665443
No 96
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.83 E-value=1.5e-20 Score=171.13 Aligned_cols=180 Identities=23% Similarity=0.330 Sum_probs=128.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------- 246 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------- 246 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+..
T Consensus 5 ~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 5 NLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--------PDSGT--IIIDGLKLTDDKKNIN 72 (213)
T ss_pred EEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEECCccchhHH
Confidence 45667776 5699999999887 999999999999999999999983 33333 222332211
Q ss_pred -ccCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 247 -SIPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 247 -~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
......++++....+...+..++..+. ..+..+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~------- 145 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVA------- 145 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHH-------
Confidence 012344555555444444444443211 1122334556677777643 577888 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+|++++.+|+++|+ ++|+.. ...+.++++++.+.+.++|+++ |+.+.+..+ ++++++++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~tvi~~s-----h~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPEL---VGEVLDVMKDLAEEGMTMVVVT-----HEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHH---HHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999 788766 7788899998877677888887 888888776 88999988874
No 97
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.83 E-value=9.2e-21 Score=181.44 Aligned_cols=189 Identities=19% Similarity=0.220 Sum_probs=139.4
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-+++++|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--------~~~G~--i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 6 SSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--------PDSGS--VQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEEcccChHHH
Confidence 355667876 5699999999888 999999999999999999999983 44444 3333332211
Q ss_pred cCCceeeeccCCCCCccccccccc-chh------hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAF-LSK------FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~------~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.....+.++....+.+++...+.. ... .+..+.+.++++.+++.+ .++.+| ||+||+. +|+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~-------la~ 146 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVG-------LAQ 146 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHH-------HHH
Confidence 124555666655555655555542 111 112334567777887754 567888 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
+++.+|+++|+ ++|+.. ...+.++++.+++ +.++++++ |+.+++.++ ++++++++|+++..|+..
T Consensus 147 al~~~p~lliLDEPt~gLD~~~---~~~l~~~l~~~~~-~~tiii~s-----H~l~~~~~~~d~i~~l~~G~i~~~g~~~ 217 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQ---LVEIRNVIKNIGK-DKTIILST-----HIMQEVEAICDRVIIINKGKIVADKKLD 217 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHhcC-CCEEEEEc-----CCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999 899876 7888899998865 67777777 888888886 999999999999877665
Q ss_pred ee
Q 016165 390 RV 391 (394)
Q Consensus 390 ~v 391 (394)
++
T Consensus 218 ~~ 219 (301)
T TIGR03522 218 EL 219 (301)
T ss_pred HH
Confidence 43
No 98
>PRK10908 cell division protein FtsE; Provisional
Probab=99.83 E-value=1.7e-20 Score=171.80 Aligned_cols=183 Identities=21% Similarity=0.278 Sum_probs=129.4
Q ss_pred eeeeee-cCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 176 EVTYRF-NDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 176 ~~~~~~-~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
++++.| ++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 6 HVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--------PSAGK--IWFSGHDITRLKNRE 73 (222)
T ss_pred eeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEEcccCChhH
Confidence 455677 44 4689999999887 999999999999999999999983 33333 2333332211
Q ss_pred ----cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
.....+.++....+...+..++..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~------ 147 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVG------ 147 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHH------
Confidence 11334455544333344444443211 1122233456677777643 678889 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+|++++.+|+++|+ .+|+.. ...+.+++.++++++.++++++ |+.+.+..+ ++++++++|+++..
T Consensus 148 -laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~G~i~~~ 218 (222)
T PRK10908 148 -IARAVVNKPAVLLADEPTGNLDDAL---SEGILRLFEEFNRVGVTVLMAT-----HDIGLISRRSYRMLTLSDGHLHGG 218 (222)
T ss_pred -HHHHHHcCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEccC
Confidence 99999999999999 888766 7788899998876677788887 888888876 89999999998653
No 99
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.83 E-value=9.4e-21 Score=185.20 Aligned_cols=189 Identities=22% Similarity=0.283 Sum_probs=137.4
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
++++++|++ .. + +++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+++..
T Consensus 3 ~~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--------p~~G~--I~~~g~~i~~~~~~~ 68 (354)
T TIGR02142 3 ARFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--------PDEGE--IVLNGRTLFDSRKGI 68 (354)
T ss_pred EEEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEECccCcccc
Confidence 467778876 33 3 78888876 999999999999999999999984 33333 222332211
Q ss_pred ----ccCCceeeeccCCCCCcccccccccchh-----hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 247 ----SIPGNTVAVQADMPFSGLTTFGTAFLSK-----FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 247 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
......++++....+.+++..++..+.. .+..+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 69 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRva------- 141 (354)
T TIGR02142 69 FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVA------- 141 (354)
T ss_pred ccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------
Confidence 1123445566655566666655542211 122334567777887754 678889 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+||+++.+|+++|+ .+|+.. ...+.++|+++.++ +.++|+++ |+.+++..+ ++++++++|+++..
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~---~~~l~~~L~~l~~~~g~tiiivt-----H~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPR---KYEILPYLERLHAEFGIPILYVS-----HSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999999 888876 78888999988765 78888888 888888776 99999999999887
Q ss_pred Cccceee
Q 016165 386 PEVVRVY 392 (394)
Q Consensus 386 ~~~~~v~ 392 (394)
++..+++
T Consensus 214 g~~~~~~ 220 (354)
T TIGR02142 214 GPIAEVW 220 (354)
T ss_pred CCHHHHh
Confidence 7665544
No 100
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.83 E-value=1.1e-20 Score=173.08 Aligned_cols=183 Identities=19% Similarity=0.268 Sum_probs=128.0
Q ss_pred eeeeeecCC--cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---
Q 016165 176 EVTYRFNDF--VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI--- 248 (394)
Q Consensus 176 ~~~~~~~~~--~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~--- 248 (394)
++++.|++. ...++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+....
T Consensus 6 ~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--------~~~G~--i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 6 NLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--------PTSGE--VLFNGQSLSKLSSN 75 (221)
T ss_pred eeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEEhhhcCHh
Confidence 455667531 13589999999887 999999999999999999999984 33333 22233221110
Q ss_pred -------CCceeeeccCCCCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccC
Q 016165 249 -------PGNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 249 -------~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~ 309 (394)
....++++....+...+...+..+ ...+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~---- 151 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVA---- 151 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH----
Confidence 124445555444444444444321 11122334566777777753 578899 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhccceee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVL 383 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~ 383 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.++ +.++|+++ |+.+.+..+++++.+++|+++
T Consensus 152 ---laral~~~p~illlDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~t-----H~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 152 ---IARALVNQPSLVLADEPTGNLDNNN---AKIIFDLMLELNRELNTSFLVVT-----HDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred ---HHHHHhCCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999 888876 78888999888654 77888888 777776656899999999875
No 101
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.3e-20 Score=179.28 Aligned_cols=193 Identities=22% Similarity=0.266 Sum_probs=136.0
Q ss_pred ceeeeeecCCc---CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc--
Q 016165 175 LEVTYRFNDFV---SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-- 247 (394)
Q Consensus 175 l~~~~~~~~~~---~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-- 247 (394)
-++++.|+... ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~ 75 (287)
T PRK13637 6 ENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--------PTSGK--IIIDGVDITDKK 75 (287)
T ss_pred EEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--------CCccE--EEECCEECCCcC
Confidence 35566775421 3599999999887 999999999999999999999984 33333 2233322211
Q ss_pred ------cCCceeeeccC-CCCCcccccccccc-------hhhhhhcCCccccccceee-----c-CCCCCc-hhhhhhhc
Q 016165 248 ------IPGNTVAVQAD-MPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLV-----D-TPGVLS-GEKQRTQR 306 (394)
Q Consensus 248 ------~~~~~~~~~~~-~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~-----D-t~g~ls-Ge~qrv~~ 306 (394)
.....++++.. ..+...+...+..+ ...+..+.+.++++.+++. | .+..+| ||+||+.
T Consensus 76 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~- 154 (287)
T PRK13637 76 VKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVA- 154 (287)
T ss_pred ccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHH-
Confidence 11234444442 11112233333311 1122334566778887774 2 467888 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhcc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSL 379 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~ 379 (394)
+|++++.+|+++|+ ++|+.. ...+.++++++.++ +.++++++ |+.+++..+ ++++++++
T Consensus 155 ------iAraL~~~P~llllDEPt~gLD~~~---~~~l~~~l~~l~~~~g~tvi~vt-----Hd~~~~~~~~drv~~l~~ 220 (287)
T PRK13637 155 ------IAGVVAMEPKILILDEPTAGLDPKG---RDEILNKIKELHKEYNMTIILVS-----HSMEDVAKLADRIIVMNK 220 (287)
T ss_pred ------HHHHHHcCCCEEEEECCccCCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEEC
Confidence 99999999999999 888876 88899999998764 78888888 888888776 99999999
Q ss_pred ceeeecCccceee
Q 016165 380 GKVLNTPEVVRVY 392 (394)
Q Consensus 380 G~i~~~~~~~~v~ 392 (394)
|+++..+...+++
T Consensus 221 G~i~~~g~~~~~~ 233 (287)
T PRK13637 221 GKCELQGTPREVF 233 (287)
T ss_pred CEEEEECCHHHHH
Confidence 9999877665543
No 102
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.82 E-value=1.7e-20 Score=174.72 Aligned_cols=192 Identities=20% Similarity=0.292 Sum_probs=133.7
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...|. +. .+..++ +.+.+++...
T Consensus 6 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~~--~~~~G~--i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 6 NLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV-PG--VRIEGK--VLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC-cC--CCCceE--EEECCEEccccccchH
Confidence 55667776 4689999999887 99999999999999999999998410 00 001333 3333433211
Q ss_pred --cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceee----c----CCCCCc-hhhhhhhccc
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLV----D----TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~----D----t~g~ls-Ge~qrv~~~~ 308 (394)
.....+.++....+. .+...+..+. ..+..+.+.++++.+++. + .++.+| ||+||+.
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~--- 154 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLC--- 154 (247)
T ss_pred HHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHH---
Confidence 123445555544444 4444443211 111223445666666664 2 578889 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ ++|+.. ...+.++++.+.+. .++|+++ |+.+.+..+ ++++++++|++
T Consensus 155 ----laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~-~tiiivs-----H~~~~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 155 ----IARALAVEPEVLLLDEPTSALDPIA---TGKIEELIQELKKK-YTIVIVT-----HNMQQAARISDRTAFFYDGEL 221 (247)
T ss_pred ----HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhc-CeEEEEe-----cCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999 888876 77888999888764 6777777 888888776 99999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..+...++
T Consensus 222 ~~~~~~~~~ 230 (247)
T TIGR00972 222 VEYGPTEQI 230 (247)
T ss_pred EEeCCHHHH
Confidence 877665543
No 103
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.82 E-value=1e-20 Score=182.89 Aligned_cols=182 Identities=16% Similarity=0.188 Sum_probs=133.7
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---------cCCceee
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---------IPGNTVA 254 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---------~~~~~~~ 254 (394)
..++++++|++.. +++|+|+||||||||+++|+|... |..++ +.+.+.+... .....++
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--------p~~G~--I~~~G~~i~~~~~~~~~~~r~~i~~v 103 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--------ATDGE--VAWLGKDLLGMKDDEWRAVRSDIQMI 103 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--------CCCcE--EEECCEECCcCCHHHHHHHhCceEEE
Confidence 3589999999887 999999999999999999999983 33333 3334433221 1234455
Q ss_pred eccCC--CCCccccccccc---------chhhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 255 VQADM--PFSGLTTFGTAF---------LSKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 255 ~~~~~--~~~g~~~~~~~~---------~~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
+|... .+...+...++. +...+..+.+.++++.+++. + .|+.+| ||+||+. ||+++
T Consensus 104 ~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~-------iArAL 176 (331)
T PRK15079 104 FQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIG-------IARAL 176 (331)
T ss_pred ecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHH-------HHHHH
Confidence 55542 222333333321 11123344556778888773 2 788999 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
+.+|+++|+ ++|+.. +.++.++|+.++++ +.++++|+ |+...+..+ +++++|+.|+++..++..+
T Consensus 177 ~~~P~llilDEPts~LD~~~---~~~i~~lL~~l~~~~~~til~iT-----Hdl~~~~~~~dri~vl~~G~ive~g~~~~ 248 (331)
T PRK15079 177 ILEPKLIICDEPVSALDVSI---QAQVVNLLQQLQREMGLSLIFIA-----HDLAVVKHISDRVLVMYLGHAVELGTYDE 248 (331)
T ss_pred hcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999 888876 88899999998764 78888888 888888886 9999999999998877655
Q ss_pred ee
Q 016165 391 VY 392 (394)
Q Consensus 391 v~ 392 (394)
++
T Consensus 249 i~ 250 (331)
T PRK15079 249 VY 250 (331)
T ss_pred HH
Confidence 54
No 104
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1e-20 Score=179.24 Aligned_cols=193 Identities=19% Similarity=0.281 Sum_probs=136.1
Q ss_pred ceeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 175 LEVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 175 l~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
-++++.|++. ...++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 8 ~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~i~~~~~~ 77 (279)
T PRK13650 8 KNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--------AESGQ--IIIDGDLLTEENVW 77 (279)
T ss_pred EeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCcE--EEECCEECCcCcHH
Confidence 3556677532 13489999999887 999999999999999999999984 33333 2333332211
Q ss_pred --cCCceeeeccC-CCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 248 --IPGNTVAVQAD-MPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 248 --~~~~~~~~~~~-~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
.....++++.. ..+.+.+...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~------- 150 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVA------- 150 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH-------
Confidence 11334455543 123333444443211 1122344567777877754 678899 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecC
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTP 386 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~ 386 (394)
+|++++.+|+++|+ ++|+.. ...+.++++.+.++ +.++++++ |+.+.+..+++++++++|+++..+
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~---~~~l~~~l~~l~~~~g~tilivt-----H~~~~~~~~dri~~l~~G~i~~~g 222 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEG---RLELIKTIKGIRDDYQMTVISIT-----HDLDEVALSDRVLVMKNGQVESTS 222 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999 888876 78888999998764 88888888 777776544999999999998877
Q ss_pred ccceee
Q 016165 387 EVVRVY 392 (394)
Q Consensus 387 ~~~~v~ 392 (394)
+..+++
T Consensus 223 ~~~~~~ 228 (279)
T PRK13650 223 TPRELF 228 (279)
T ss_pred CHHHHH
Confidence 665543
No 105
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.4e-20 Score=177.03 Aligned_cols=190 Identities=18% Similarity=0.177 Sum_probs=130.9
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
--++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 14 i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~ 81 (265)
T PRK10575 14 LRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--------PSEGE--ILLDAQPLESWSSK 81 (265)
T ss_pred EeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--------CCCCE--EEECCEehhhCCHH
Confidence 3455667765 5699999999887 999999999999999999999984 22222 2222222110
Q ss_pred --cCCceeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccC
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~ 309 (394)
.....++++....+.+.+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~---- 157 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAW---- 157 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHH----
Confidence 11233333432223333333322110 0112233456667776643 678899 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+|++++.+|+++|+ .+|+.. ...+.+++.++.+. +.++++++ |+.+++.+. ++++++++|++
T Consensus 158 ---laral~~~p~lllLDEPt~~LD~~~---~~~~~~~l~~l~~~~~~tiii~s-----H~~~~i~~~~d~i~~l~~G~i 226 (265)
T PRK10575 158 ---IAMLVAQDSRCLLLDEPTSALDIAH---QVDVLALVHRLSQERGLTVIAVL-----HDINMAARYCDYLVALRGGEM 226 (265)
T ss_pred ---HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCeE
Confidence 99999999999999 888876 77888999888654 77888888 888888776 99999999999
Q ss_pred eecCccce
Q 016165 383 LNTPEVVR 390 (394)
Q Consensus 383 ~~~~~~~~ 390 (394)
+..+...+
T Consensus 227 ~~~~~~~~ 234 (265)
T PRK10575 227 IAQGTPAE 234 (265)
T ss_pred EEecCHHH
Confidence 87665544
No 106
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.82 E-value=1.7e-20 Score=192.26 Aligned_cols=191 Identities=15% Similarity=0.224 Sum_probs=140.5
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI--- 248 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~--- 248 (394)
--++++.|++ ..++++++|++.. +++|+|+||||||||+++|+|... |..+. +.+.+.+....
T Consensus 14 ~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~ 81 (510)
T PRK15439 14 ARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--------PDSGT--LEIGGNPCARLTPA 81 (510)
T ss_pred EEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEECCCCCHH
Confidence 3456778876 5699999999887 999999999999999999999983 33333 22333221111
Q ss_pred ----CCceeeeccCCCCCcccccccccch---hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 ----PGNTVAVQADMPFSGLTTFGTAFLS---KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ----~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
.+..++++....+.+++...+..+. .....+.+.++++.+++.+ .++.+| ||+||+. +|++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~a 154 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVE-------ILRG 154 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHH-------HHHH
Confidence 1344556655555555555554221 1122344566777777743 678899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
++.+|+++|+ .+|+.. ...+.++|+++.+++.++|+++ |+.+.+..+ ++++++++|+++..++..+
T Consensus 155 L~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~g~tiiivt-----Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAE---TERLFSRIRELLAQGVGIVFIS-----HKLPEIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEecChHH
Confidence 9999999999 888876 7888899999877788888888 888888776 9999999999988776654
Q ss_pred e
Q 016165 391 V 391 (394)
Q Consensus 391 v 391 (394)
+
T Consensus 227 ~ 227 (510)
T PRK15439 227 L 227 (510)
T ss_pred c
Confidence 4
No 107
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.6e-20 Score=177.49 Aligned_cols=189 Identities=21% Similarity=0.296 Sum_probs=133.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 8 ~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 8 EDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--------PQRGR--VKVMGREVNAENEKW 76 (274)
T ss_pred EEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--------CCceE--EEECCEECCCCCHHH
Confidence 4556677521 4599999999887 999999999999999999999984 33333 3333332211
Q ss_pred -cCCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 -IPGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 -~~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
.....++++... .+...+..++..+. .....+.+.++++.+++.+ .|..+| ||+||+. +
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~-------l 149 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVA-------I 149 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHH-------H
Confidence 112344444431 12223333433211 1122334566777777743 688899 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
|++++.+|+++|+ .+|+.. ...+.++++.+++++.++++++ |+.+.+.++ ++++++++|+++..+.
T Consensus 150 araL~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~g~tili~t-----H~~~~~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRG---QETLMEILDRLHNQGKTVIVAT-----HDVDLAAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999 888876 8888999999876678888888 888888776 9999999999988776
Q ss_pred cc
Q 016165 388 VV 389 (394)
Q Consensus 388 ~~ 389 (394)
+.
T Consensus 222 ~~ 223 (274)
T PRK13647 222 KS 223 (274)
T ss_pred HH
Confidence 53
No 108
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.82 E-value=1.2e-20 Score=182.37 Aligned_cols=185 Identities=14% Similarity=0.203 Sum_probs=134.0
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----------CCcee
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----------PGNTV 253 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----------~~~~~ 253 (394)
..++++++|++.+ +++|+|+||||||||+++|+|...|.. ...++ +.+.+.+...+ ....+
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~-----~~sG~--I~~~G~~i~~~~~~~~~~~r~~~i~~ 101 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG-----RIGGS--ATFNGREILNLPEKELNKLRAEQISM 101 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC-----CCCeE--EEECCEECCcCCHHHHHHHhcCCEEE
Confidence 3589999999887 999999999999999999999984210 01233 44455443221 13455
Q ss_pred eeccCC--CCCccccccccc--------chhhhhhcCCccccccceeec-------CCCCCc-hhhhhhhcccChHHHHH
Q 016165 254 AVQADM--PFSGLTTFGTAF--------LSKFECSQMPHSLLEHITLVD-------TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 254 ~~~~~~--~~~g~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~D-------t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
++|... ....++...+.. ....+..+.+.++++.+++.+ .|..+| ||+||+. ||+
T Consensus 102 v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~-------IAr 174 (330)
T PRK09473 102 IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVM-------IAM 174 (330)
T ss_pred EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHH-------HHH
Confidence 666642 122233222211 111223445667777777753 678899 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
+++.+|+++|+ ++|+.. +.++.++|+.++++ +.++++|+ |+...+..+ |++++|+.|++++.|+.
T Consensus 175 AL~~~P~llilDEPts~LD~~~---~~~i~~lL~~l~~~~g~til~iT-----Hdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 175 ALLCRPKLLIADEPTTALDVTV---QAQIMTLLNELKREFNTAIIMIT-----HDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHHHcCCEEEEEE-----CCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999 888876 88899999998765 78888888 888888776 99999999999998877
Q ss_pred ceee
Q 016165 389 VRVY 392 (394)
Q Consensus 389 ~~v~ 392 (394)
.+++
T Consensus 247 ~~i~ 250 (330)
T PRK09473 247 RDVF 250 (330)
T ss_pred HHHH
Confidence 6654
No 109
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.6e-20 Score=178.70 Aligned_cols=192 Identities=20% Similarity=0.282 Sum_probs=135.6
Q ss_pred ceeeeeecCCc---CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc---
Q 016165 175 LEVTYRFNDFV---SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--- 246 (394)
Q Consensus 175 l~~~~~~~~~~---~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--- 246 (394)
-++++.|+... ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+..
T Consensus 5 ~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~i~~~~ 74 (288)
T PRK13643 5 EKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--------PTEGK--VTVGDIVVSSTS 74 (288)
T ss_pred EEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--------CCCcE--EEECCEECcccc
Confidence 35566776321 2489999999887 999999999999999999999984 33333 222332211
Q ss_pred -------ccCCceeeeccC--CCCCcccccccccch-------hhhhhcCCccccccceee----c-CCCCCc-hhhhhh
Q 016165 247 -------SIPGNTVAVQAD--MPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRT 304 (394)
Q Consensus 247 -------~~~~~~~~~~~~--~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~----D-t~g~ls-Ge~qrv 304 (394)
......++++.. ..+. .+...+..+. ..+....+.++++.+++. + .+..+| ||+||+
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrv 153 (288)
T PRK13643 75 KQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRV 153 (288)
T ss_pred ccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHH
Confidence 011234445442 2222 2333433111 122334456677777763 2 678889 999999
Q ss_pred hcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS 378 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~ 378 (394)
. +|++++.+|+++|+ ++|+.. ...+.++++.+++++.++++++ |+.+.+..+ +++++++
T Consensus 154 a-------iA~aL~~~p~illLDEPt~gLD~~~---~~~l~~~l~~l~~~g~til~vt-----Hd~~~~~~~~dri~~l~ 218 (288)
T PRK13643 154 A-------IAGILAMEPEVLVLDEPTAGLDPKA---RIEMMQLFESIHQSGQTVVLVT-----HLMDDVADYADYVYLLE 218 (288)
T ss_pred H-------HHHHHHhCCCEEEEECCccCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----cCHHHHHHhCCEEEEEE
Confidence 9 99999999999999 888876 7888899998877788888888 888888776 9999999
Q ss_pred cceeeecCccceee
Q 016165 379 LGKVLNTPEVVRVY 392 (394)
Q Consensus 379 ~G~i~~~~~~~~v~ 392 (394)
+|+++..+++.++|
T Consensus 219 ~G~i~~~g~~~~~~ 232 (288)
T PRK13643 219 KGHIISCGTPSDVF 232 (288)
T ss_pred CCEEEEECCHHHHH
Confidence 99999888776654
No 110
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.82 E-value=1.8e-20 Score=175.50 Aligned_cols=189 Identities=22% Similarity=0.244 Sum_probs=132.8
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----- 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----- 248 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+....
T Consensus 6 ~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 6 RVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--------PDAGT--VDLAGVDLHGLSRRAR 73 (256)
T ss_pred eEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--------CCCCE--EEECCEEcccCCHHHH
Confidence 45667776 5699999999887 999999999999999999999883 33333 22333222111
Q ss_pred -CCceeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 249 -PGNTVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 249 -~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
....+..+....+...+...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~------ 147 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVH------ 147 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH------
Confidence 1233444443222233333333110 0112234556677776643 678889 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++++++.++++++ |+.+.+... ++++++++|+++..
T Consensus 148 -la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 148 -VARALAQEPKLLLLDEPTNHLDVRA---QLETLALVRELAATGVTVVAAL-----HDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred -HHHHHhcCCCEEEEcCccccCCHHH---HHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEeCCCEEEe
Confidence 99999999999999 888876 7888899998876677888888 888888776 99999999999887
Q ss_pred Ccccee
Q 016165 386 PEVVRV 391 (394)
Q Consensus 386 ~~~~~v 391 (394)
++..++
T Consensus 219 g~~~~~ 224 (256)
T TIGR03873 219 GPPREV 224 (256)
T ss_pred cCHHHh
Confidence 766554
No 111
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.82 E-value=2.2e-20 Score=169.69 Aligned_cols=180 Identities=24% Similarity=0.347 Sum_probs=124.5
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------c
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------I 248 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------~ 248 (394)
+++.|++..+.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .
T Consensus 5 l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 5 LSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--------PTSGE--VLVDGKDLTKLSLKELR 74 (211)
T ss_pred EEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--------CCCce--EEECCEEcccCCHHHHH
Confidence 4556654213589999999887 999999999999999999999983 33333 2233322111 1
Q ss_pred CCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 249 PGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 249 ~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
....+..+... .+...+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+. +||
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------lar 147 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVA-------IAG 147 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH-------HHH
Confidence 23344444431 22233444433211 1112334556777777743 678899 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+++.+|+++|+ .+|+.. ...+.++++++.+++.++|+++ |+.+++..+ ++++++++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~---~~~~~~~l~~~~~~~~tvi~~s-----H~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAG---RRELLELLKKLKAEGKTIIIVT-----HDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEEeCCC
Confidence 99999999999 888876 7888899988876677888888 888888775 8888888774
No 112
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.4e-20 Score=177.91 Aligned_cols=190 Identities=22% Similarity=0.305 Sum_probs=133.6
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 6 ~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 6 NVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--------PQKGK--VLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCce--EEECCEECCccccHHH
Confidence 556677431 4599999999887 999999999999999999999983 33333 2233332211
Q ss_pred -cCCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 -IPGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 -~~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
.....++++... .+.+.+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+. +
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~-------l 147 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVA-------L 147 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHH-------H
Confidence 112344444432 23333444433111 1122344566777777743 578889 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCcc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEV 388 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~ 388 (394)
|++++.+|+++|+ .+|+.. ...+.++++++++++.++++++ |+.+.+..+++++++++|+++..++.
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~---~~~l~~~l~~l~~~g~til~~t-----H~~~~~~~~d~v~~l~~G~i~~~g~~ 219 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDS---GIAVLERIKKLHEKGKTIVYIT-----HNLEELHDADRIIVMDRGKIVLEGEP 219 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----cCHHHHhhCCEEEEEECCEEEEECCH
Confidence 9999999999999 888876 7888899998877788888888 77777754599999999999887765
Q ss_pred cee
Q 016165 389 VRV 391 (394)
Q Consensus 389 ~~v 391 (394)
.++
T Consensus 220 ~~~ 222 (274)
T PRK13644 220 ENV 222 (274)
T ss_pred HHH
Confidence 544
No 113
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.82 E-value=1.9e-20 Score=170.50 Aligned_cols=181 Identities=18% Similarity=0.260 Sum_probs=128.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 5 ~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 5 NVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--------PTSGT--IRVNGQDVSDLRGRAI 73 (214)
T ss_pred EEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEEcccCCHHHH
Confidence 455677532 4599999999887 999999999999999999999883 33333 2233332211
Q ss_pred ---cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
.....++.+....+...+..++..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~------- 146 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVA------- 146 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHH-------
Confidence 12344555555555555555544211 1112234556777777643 578889 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.+++.++|+++ |+.+.+..+ ++++++++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~---~~~~~~~l~~~~~~~~tiiivt-----H~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDT---TWEIMNLLKKINKAGTTVVVAT-----HAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999 888876 7888899998876677888888 778888776 88888888864
No 114
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.82 E-value=2.4e-20 Score=174.80 Aligned_cols=189 Identities=21% Similarity=0.263 Sum_probs=132.1
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 7 ~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--------p~~G~--i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 7 NLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--------PDSGE--VRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCCE--EEECCEEcccCCHHHh
Confidence 45667776 5699999999887 999999999999999999999983 33333 2222222111
Q ss_pred cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.....+.++....+...+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+. +|+
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~-------la~ 147 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQ-------LAR 147 (258)
T ss_pred hhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHH-------HHH
Confidence 11233444443332333433333111 0112234566777777743 678899 9999999 999
Q ss_pred HHh------hcCCEEEE-----EeCCCCCCchHHHHHHHHHHh-cCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 316 WFA------AKCDLILL-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 316 al~------~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~-~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+++ .+|+++|+ .+|+.. ...+.++++++. +++.++|+++ |+.+.+..+ ++++++++|++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAH---QHHVLRLARQLAHERGLAVIVVL-----HDLNLAARYADRIVLLHQGRL 219 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEE-----CCHHHHHHhcCEEEEEECCEE
Confidence 999 59999999 888876 788889999887 5677888888 888888776 99999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..++..++
T Consensus 220 ~~~~~~~~~ 228 (258)
T PRK13548 220 VADGTPAEV 228 (258)
T ss_pred EeeCCHHHH
Confidence 877665443
No 115
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.7e-20 Score=174.09 Aligned_cols=188 Identities=24% Similarity=0.305 Sum_probs=133.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 5 ~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 5 NVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--------PTSGE--IFIDGEDIREQDPVEL 73 (242)
T ss_pred EEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCce--EEECCeEcCcCChHHh
Confidence 456677642 3489999999887 999999999999999999999983 33333 2333332211
Q ss_pred cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceee-----c-CCCCCc-hhhhhhhcccChHHH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLV-----D-TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~-----D-t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
.....+.++....+.+.+...+..+. .....+.+.++++.+++. + .+..+| ||+||+. +
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~-------l 146 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVG-------V 146 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHH-------H
Confidence 12344455555445455555544211 112233455667777664 2 467788 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
|++++.+|+++|+ .+|+.. ...+.++++++.++ +.++|+++ |+.+.+..+ ++++++++|+++..+
T Consensus 147 aral~~~p~llllDEPt~~LD~~~---~~~l~~~L~~~~~~~g~tvii~s-----H~~~~~~~~~d~i~~l~~G~i~~~~ 218 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPIT---RDQLQEEFKRLQQELGKTIVFVT-----HDIDEAFRLADRIAIMKNGEIVQVG 218 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----cCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999 888876 77888889888764 77788888 788877776 999999999998766
Q ss_pred ccc
Q 016165 387 EVV 389 (394)
Q Consensus 387 ~~~ 389 (394)
+..
T Consensus 219 ~~~ 221 (242)
T cd03295 219 TPD 221 (242)
T ss_pred CHH
Confidence 544
No 116
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=2.3e-20 Score=156.46 Aligned_cols=188 Identities=17% Similarity=0.233 Sum_probs=136.7
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc------
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI------ 248 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~------ 248 (394)
..+.|+. ..++-|++++.+. .++++||+|||||||++.|.-++.| ..+.-.+.-..-+....
T Consensus 8 in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p--------~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 8 INCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP--------RSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred ccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC--------CCCeEEecccccccccCccHHHH
Confidence 3457777 6799999998776 9999999999999999999888843 22222111111111100
Q ss_pred ----CCceeeeccCCCCCccccccccc--------chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 249 ----PGNTVAVQADMPFSGLTTFGTAF--------LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 249 ----~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
..+..+++....++.++..+|.. +...+....+.++|+++.+.| .|=++| |++|||+
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva------ 151 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA------ 151 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH------
Confidence 12223444445555555555442 223356667788888888876 677888 8999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
|||+++.+|+++|+ .+|+.- ..++.++++++..-|.+-++|+ |+.+...+. .++++|.+|+|++.
T Consensus 152 -iaralmmkpqvllfdeptaaldpei---taqvv~iikel~~tgitqvivt-----hev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 152 -IARALMMEPQVLLFDEPTAALDPEI---TAQIVSIIKELAETGITQVIVT-----HEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred -HHHHHhcCCcEEeecCcccccCHHH---HHHHHHHHHHHHhcCceEEEEE-----eehhHHHhhhhheEeeecCeeEee
Confidence 99999999999999 788764 8889999999999899989999 666666666 89999999999988
Q ss_pred Cccc
Q 016165 386 PEVV 389 (394)
Q Consensus 386 ~~~~ 389 (394)
|+..
T Consensus 223 g~a~ 226 (242)
T COG4161 223 GDAS 226 (242)
T ss_pred cchh
Confidence 7643
No 117
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.4e-20 Score=168.57 Aligned_cols=181 Identities=21% Similarity=0.335 Sum_probs=126.7
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IP 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~ 249 (394)
++++.|++ .. .+++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... ..
T Consensus 5 ~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--------~~~G~--i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 5 KIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--------PQSGR--VLINGVDVTAAPPADR 70 (211)
T ss_pred eEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEEcCcCCHhHc
Confidence 44556765 22 278888776 999999999999999999999984 33333 2223322111 11
Q ss_pred CceeeeccCCCCCcccccccccchh-------hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLSK-------FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
...+.++....+.+.+...+..+.. ....+.+.++++.+++.+ .+..+| ||+||+. +|+++
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------ia~al 143 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVA-------LARVL 143 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHH-------HHHHH
Confidence 3445555554455545444432110 122334566777777643 677889 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+.+|+++|+ .+|+.. ...+.++++++.++ +.++++++ |+.+++..+ ++++++++|+++..
T Consensus 144 ~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tii~~s-----H~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPAL---RAEMLDLVLDLHAETKMTVLMVT-----HQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred hcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHhhhCEEEEEECCEEeec
Confidence 999999999 888876 78888999888653 77888888 888888775 99999999998754
No 118
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.9e-20 Score=192.05 Aligned_cols=190 Identities=17% Similarity=0.216 Sum_probs=137.1
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+....
T Consensus 9 ~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--------p~~G~--i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 9 AGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--------PTKGT--ITINNINYNKLDHKL 76 (510)
T ss_pred eeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--------CCccE--EEECCEECCCCCHHH
Confidence 355667776 5699999999887 999999999999999999999984 33333 22233221110
Q ss_pred ---CCceeeeccCCCCCcccccccccch--------------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhc
Q 016165 249 ---PGNTVAVQADMPFSGLTTFGTAFLS--------------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQR 306 (394)
Q Consensus 249 ---~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~ 306 (394)
.+..++++....+.+++...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~- 155 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLE- 155 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH-
Confidence 1234444544334444433332110 1122344566777777753 578899 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+|++++.+|+++|+ .+|+.. ...+.++|+++++.+.++|+++ |+.+.+..+ ++++++++|
T Consensus 156 ------ia~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tiiivs-----Hd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 156 ------IAKTLMLDAKVIIMDEPTSSLTNKE---VDYLFLIMNQLRKEGTAIVYIS-----HKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred ------HHHHHhcCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEECC
Confidence 99999999999999 888876 8888999999887788888888 888888876 999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..+.+.++
T Consensus 222 ~i~~~g~~~~~ 232 (510)
T PRK09700 222 SSVCSGMVSDV 232 (510)
T ss_pred EEeeecchhhC
Confidence 99887766554
No 119
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.5e-20 Score=177.99 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=135.1
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++....++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 9 ~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--------p~~G~--i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 9 EHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--------PEAGT--ITVGGMVLSEETVWD 78 (279)
T ss_pred EEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--------CCCcE--EEECCEECCcCcHHH
Confidence 455667764224599999999887 999999999999999999999984 33343 3333332211
Q ss_pred -cCCceeeeccCC-CCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 -IPGNTVAVQADM-PFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 -~~~~~~~~~~~~-~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
.....+.++... .+...+...+..+ ...+..+.+.++++.+++.+ .++.+| ||+||+. +
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~-------l 151 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVA-------I 151 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH-------H
Confidence 112344444431 2223344444311 11122344566777777754 788899 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~ 387 (394)
|++++.+|+++|+ ++|+.. ...+.++++++.++ +.++++++ |+.+.+..+++++++++|+++..++
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~---~~~l~~~l~~l~~~~~~tilivs-----H~~~~~~~~d~i~~l~~G~i~~~g~ 223 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRG---RREVLETVRQLKEQKGITVLSIT-----HDLDEAAQADRVIVMNKGEILEEGT 223 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHcCCCEEEEEe-----cCHHHHHcCCEEEEEECCEEEEECC
Confidence 9999999999999 888876 88888999988765 78888888 7777776569999999999988776
Q ss_pred ccee
Q 016165 388 VVRV 391 (394)
Q Consensus 388 ~~~v 391 (394)
..++
T Consensus 224 ~~~~ 227 (279)
T PRK13635 224 PEEI 227 (279)
T ss_pred HHHH
Confidence 5543
No 120
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.2e-20 Score=177.68 Aligned_cols=190 Identities=18% Similarity=0.269 Sum_probs=135.0
Q ss_pred eeeeeecCC---cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---
Q 016165 176 EVTYRFNDF---VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--- 247 (394)
Q Consensus 176 ~~~~~~~~~---~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--- 247 (394)
++++.|++. .+.++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+++...
T Consensus 7 ~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~ 76 (287)
T PRK13641 7 NVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--------PSSGT--ITIAGYHITPETG 76 (287)
T ss_pred EEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCcE--EEECCEECccccc
Confidence 456677631 13589999999887 999999999999999999999983 33343 3333332210
Q ss_pred -------cCCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceee-c----CCCCCc-hhhhhhhc
Q 016165 248 -------IPGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQR 306 (394)
Q Consensus 248 -------~~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~ 306 (394)
..+..++++... .+...+...+..+. ..+..+.+.++++.+++. + .++.+| ||+||+.
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~- 155 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA- 155 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH-
Confidence 123444455431 11123444443211 112334466777777774 3 578899 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+|++++.+|+++|+ ++|+.. ...+.++++.+++.+.++++++ |+.+.+..+ ++++++++|
T Consensus 156 ------laral~~~p~lLlLDEPt~gLD~~~---~~~l~~~l~~l~~~g~tvlivs-----H~~~~~~~~~d~v~~l~~G 221 (287)
T PRK13641 156 ------IAGVMAYEPEILCLDEPAAGLDPEG---RKEMMQLFKDYQKAGHTVILVT-----HNMDDVAEYADDVLVLEHG 221 (287)
T ss_pred ------HHHHHHcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEECC
Confidence 99999999999999 888876 7888899999876788888888 888888776 999999999
Q ss_pred eeeecCccce
Q 016165 381 KVLNTPEVVR 390 (394)
Q Consensus 381 ~i~~~~~~~~ 390 (394)
+++..++..+
T Consensus 222 ~i~~~g~~~~ 231 (287)
T PRK13641 222 KLIKHASPKE 231 (287)
T ss_pred EEEEeCCHHH
Confidence 9987766544
No 121
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2e-20 Score=177.90 Aligned_cols=192 Identities=20% Similarity=0.295 Sum_probs=136.4
Q ss_pred ceeeeeecCCc---CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc--
Q 016165 175 LEVTYRFNDFV---SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-- 247 (394)
Q Consensus 175 l~~~~~~~~~~---~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-- 247 (394)
-++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--------p~~G~--i~~~g~~i~~~~ 75 (286)
T PRK13646 6 DNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--------PTTGT--VTVDDITITHKT 75 (286)
T ss_pred EEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCcE--EEECCEECcccc
Confidence 35566775321 3599999999888 999999999999999999999983 33443 2333322211
Q ss_pred --------cCCceeeeccC--CCCCcccccccccc-------hhhhhhcCCccccccceee-c----CCCCCc-hhhhhh
Q 016165 248 --------IPGNTVAVQAD--MPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRT 304 (394)
Q Consensus 248 --------~~~~~~~~~~~--~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv 304 (394)
.....++++.. ..+. .+..++..+ ...+..+.+.++++.+++. + .+..+| ||+||+
T Consensus 76 ~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 76 KDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred ccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 11334455542 1222 233333321 1112344566778888874 3 577888 999999
Q ss_pred hcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhh
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMW 377 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~ 377 (394)
. +|++++.+|+++|+ .+|+.. ...+.++++++.+ .+.++++++ |+.+.+..+ ++++++
T Consensus 155 ~-------laraL~~~p~illlDEPt~~LD~~~---~~~l~~~l~~l~~~~g~tvl~vt-----H~~~~~~~~~dri~~l 219 (286)
T PRK13646 155 A-------IVSILAMNPDIIVLDEPTAGLDPQS---KRQVMRLLKSLQTDENKTIILVS-----HDMNEVARYADEVIVM 219 (286)
T ss_pred H-------HHHHHHhCCCEEEEECCcccCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----cCHHHHHHhCCEEEEE
Confidence 9 99999999999999 888876 7888899999875 478888888 888888776 999999
Q ss_pred ccceeeecCccceee
Q 016165 378 SLGKVLNTPEVVRVY 392 (394)
Q Consensus 378 ~~G~i~~~~~~~~v~ 392 (394)
.+|+++..+++.+++
T Consensus 220 ~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 220 KEGSIVSQTSPKELF 234 (286)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999877765543
No 122
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.7e-20 Score=177.12 Aligned_cols=190 Identities=16% Similarity=0.224 Sum_probs=130.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+..
T Consensus 5 ~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 5 SDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--------PQKGA--VLWQGKPLDYSKRGL 72 (271)
T ss_pred EEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--------CCccE--EEECCEEcccccCCH
Confidence 355667876 5699999999887 999999999999999999999984 33333 222332211
Q ss_pred -c-cCCceeeeccCC-CCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 247 -S-IPGNTVAVQADM-PFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 247 -~-~~~~~~~~~~~~-~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
. .....++++... .+...+...+..+ ...+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~------ 146 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVA------ 146 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHH------
Confidence 0 112334444321 1111111122111 11112233455666666643 578889 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+|++++.+|+++|+ ++|+.. ...+.++|+++.+.+.++|+++ |+.+.+..+ ++++++++|+++..
T Consensus 147 -laraL~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~g~tii~vt-----H~~~~~~~~~d~i~~l~~G~i~~~ 217 (271)
T PRK13638 147 -IAGALVLQARYLLLDEPTAGLDPAG---RTQMIAIIRRIVAQGNHVIISS-----HDIDLIYEISDAVYVLRQGQILTH 217 (271)
T ss_pred -HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999 888876 7888899998876677888888 888888776 99999999999887
Q ss_pred Ccccee
Q 016165 386 PEVVRV 391 (394)
Q Consensus 386 ~~~~~v 391 (394)
+...++
T Consensus 218 g~~~~~ 223 (271)
T PRK13638 218 GAPGEV 223 (271)
T ss_pred CCHHHH
Confidence 765544
No 123
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.1e-20 Score=186.33 Aligned_cols=185 Identities=21% Similarity=0.307 Sum_probs=136.9
Q ss_pred eecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---------
Q 016165 180 RFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI--------- 248 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~--------- 248 (394)
.|+. ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+....
T Consensus 37 ~~~~--~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--------p~sG~--I~i~G~~i~~~~~~~l~~~~ 104 (400)
T PRK10070 37 KTGL--SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--------PTRGQ--VLIDGVDIAKISDAELREVR 104 (400)
T ss_pred hcCC--eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--------CCCCE--EEECCEECCcCCHHHHHHHH
Confidence 4444 3478999998887 999999999999999999999983 44444 33344332111
Q ss_pred -CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 249 -PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 249 -~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
....++++....+...+...+..+. ..+..+.+.++++.+++.+ .|..+| ||+||+. +||
T Consensus 105 ~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~-------LAr 177 (400)
T PRK10070 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVG-------LAR 177 (400)
T ss_pred hCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHH-------HHH
Confidence 2355666666556566665555221 1123345667788887754 688899 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
+++.+|+++|+ .+|+.. ...+.+++.++.+ .++++|+++ |+.+++..+ ++++++++|+++..++.
T Consensus 178 AL~~~P~iLLLDEPts~LD~~~---r~~l~~~L~~l~~~~g~TIIivT-----Hd~~~~~~~~Dri~vL~~G~i~~~g~~ 249 (400)
T PRK10070 178 ALAINPDILLMDEAFSALDPLI---RTEMQDELVKLQAKHQRTIVFIS-----HDLDEAMRIGDRIAIMQNGEVVQVGTP 249 (400)
T ss_pred HHhcCCCEEEEECCCccCCHHH---HHHHHHHHHHHHHHCCCeEEEEE-----CCHHHHHHhCCEEEEEECCEEEecCCH
Confidence 99999999999 888876 7888888988865 477888888 888888776 99999999999887765
Q ss_pred cee
Q 016165 389 VRV 391 (394)
Q Consensus 389 ~~v 391 (394)
.++
T Consensus 250 ~~l 252 (400)
T PRK10070 250 DEI 252 (400)
T ss_pred HHH
Confidence 544
No 124
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.82 E-value=2.4e-20 Score=171.02 Aligned_cols=187 Identities=17% Similarity=0.186 Sum_probs=131.3
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--ccCCc
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--SIPGN 251 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--~~~~~ 251 (394)
++++.|++ +.++++++|++.+ +++|+|+||+|||||+++|+|... |..++ +.+.+.+.. .....
T Consensus 5 ~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 5 NLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--------PTSGE--IIFDGHPWTRKDLHKI 72 (223)
T ss_pred eEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEeccccccccE
Confidence 44557765 5689999998877 999999999999999999999883 33333 222222111 01123
Q ss_pred eeeeccCCCCCcccccccccchh---hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCE
Q 016165 252 TVAVQADMPFSGLTTFGTAFLSK---FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (394)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dl 323 (394)
.+.++....+...+...+..+.. ......+.++++.+++.+ .++.+| ||+||+. +|++++.+|++
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~-------laral~~~p~l 145 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLG-------IAIALLNHPKL 145 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 34444443344444444432111 011234456677777754 567788 9999999 99999999999
Q ss_pred EEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 324 ILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 324 lLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
+|+ .+|+.. ...+.+++.++.+.+.++++++ |+.+.+... ++++.+++|+++..+++.
T Consensus 146 lllDEP~~~LD~~~---~~~l~~~L~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 146 LILDEPTNGLDPIG---IQELRELIRSFPEQGITVILSS-----HILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred EEECCCccCCCHHH---HHHHHHHHHHHHHCCCEEEEEc-----CCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 999 888876 7888899998876677788887 888888775 999999999998766543
No 125
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.6e-20 Score=178.84 Aligned_cols=193 Identities=17% Similarity=0.209 Sum_probs=136.9
Q ss_pred ceeeeeecCC---cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc--
Q 016165 175 LEVTYRFNDF---VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-- 247 (394)
Q Consensus 175 l~~~~~~~~~---~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-- 247 (394)
-++++.|++. ...++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+++...
T Consensus 6 ~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~i~~~~ 75 (290)
T PRK13634 6 QKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--------PTSGT--VTIGERVITAGK 75 (290)
T ss_pred EEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--------CCCcE--EEECCEECcccc
Confidence 3556677532 13599999999887 999999999999999999999984 33333 3333332210
Q ss_pred --------cCCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceee-c----CCCCCc-hhhhhhh
Q 016165 248 --------IPGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQ 305 (394)
Q Consensus 248 --------~~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~ 305 (394)
.....++++... .+...+..++..+. ..+..+.+.++++.+++. + .+..+| ||+||+.
T Consensus 76 ~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 76 KNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred ccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence 113444555431 12123444443211 112334566777788774 2 578899 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWS 378 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~ 378 (394)
+|++++.+|+++|+ .+|+.. ...+.++++.+.++ +.+||+++ |+.+.+..+ +++++++
T Consensus 156 -------lAraL~~~P~llllDEPt~~LD~~~---~~~l~~~L~~l~~~~g~tviiit-----Hd~~~~~~~~drv~~l~ 220 (290)
T PRK13634 156 -------IAGVLAMEPEVLVLDEPTAGLDPKG---RKEMMEMFYKLHKEKGLTTVLVT-----HSMEDAARYADQIVVMH 220 (290)
T ss_pred -------HHHHHHcCCCEEEEECCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEE
Confidence 99999999999999 888876 78888999988664 78888888 888888776 9999999
Q ss_pred cceeeecCccceee
Q 016165 379 LGKVLNTPEVVRVY 392 (394)
Q Consensus 379 ~G~i~~~~~~~~v~ 392 (394)
+|+++..+.+.+++
T Consensus 221 ~G~i~~~g~~~~~~ 234 (290)
T PRK13634 221 KGTVFLQGTPREIF 234 (290)
T ss_pred CCEEEEECCHHHHh
Confidence 99999877765543
No 126
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.4e-20 Score=180.20 Aligned_cols=196 Identities=16% Similarity=0.204 Sum_probs=139.3
Q ss_pred eeeeeecCCc--CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC--
Q 016165 176 EVTYRFNDFV--SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP-- 249 (394)
Q Consensus 176 ~~~~~~~~~~--~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~-- 249 (394)
++++.|+... ..+++|+||++.. +++|+|+||||||||+++|+|...+ ...|..++ +.+.+++.....
T Consensus 8 ~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~----~~~~~~G~--i~~~G~~i~~~~~~ 81 (326)
T PRK11022 8 KLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY----PGRVMAEK--LEFNGQDLQRISEK 81 (326)
T ss_pred CeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC----CCCCcceE--EEECCEECCcCCHH
Confidence 3445665421 2589999999988 9999999999999999999998731 01123333 444554432211
Q ss_pred --------CceeeeccCCC-CC-ccccccccc--------chhhhhhcCCccccccceeec-------CCCCCc-hhhhh
Q 016165 250 --------GNTVAVQADMP-FS-GLTTFGTAF--------LSKFECSQMPHSLLEHITLVD-------TPGVLS-GEKQR 303 (394)
Q Consensus 250 --------~~~~~~~~~~~-~~-g~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~D-------t~g~ls-Ge~qr 303 (394)
...+++|.... +. .++...+.. ....+..+.+.++++.+++.+ .|+.+| ||+||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 24556665431 22 222211110 011234456778888888853 688899 99999
Q ss_pred hhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhh
Q 016165 304 TQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALM 376 (394)
Q Consensus 304 v~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~ 376 (394)
+. ||++++.+|+++|+ ++|+.. +.+++++|+.+++ .+.++|+|+ |+...+..+ |++++
T Consensus 162 v~-------iArAL~~~P~llilDEPts~LD~~~---~~~il~lL~~l~~~~g~til~iT-----Hdl~~~~~~adri~v 226 (326)
T PRK11022 162 VM-------IAMAIACRPKLLIADEPTTALDVTI---QAQIIELLLELQQKENMALVLIT-----HDLALVAEAAHKIIV 226 (326)
T ss_pred HH-------HHHHHHhCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEE
Confidence 99 99999999999999 888876 8889999999876 478888888 888888776 99999
Q ss_pred hccceeeecCccceee
Q 016165 377 WSLGKVLNTPEVVRVY 392 (394)
Q Consensus 377 ~~~G~i~~~~~~~~v~ 392 (394)
|+.|++++.++..+++
T Consensus 227 m~~G~ive~g~~~~~~ 242 (326)
T PRK11022 227 MYAGQVVETGKAHDIF 242 (326)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999887765554
No 127
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.82 E-value=4.3e-20 Score=169.77 Aligned_cols=185 Identities=18% Similarity=0.208 Sum_probs=125.7
Q ss_pred eeeeeecCCc--CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 176 EVTYRFNDFV--SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 176 ~~~~~~~~~~--~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~ 75 (228)
T cd03257 6 NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--------PTSGS--IIFDGKDLLKLSRR 75 (228)
T ss_pred eeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEEccccchh
Confidence 4566776420 1589999999887 999999999999999999999983 33333 2223322211
Q ss_pred -----cCCceeeeccC--CCCCcccccccccch-------h-hhhhcC-Cccccccceee----c-CCCCCc-hhhhhhh
Q 016165 248 -----IPGNTVAVQAD--MPFSGLTTFGTAFLS-------K-FECSQM-PHSLLEHITLV----D-TPGVLS-GEKQRTQ 305 (394)
Q Consensus 248 -----~~~~~~~~~~~--~~~~g~~~~~~~~~~-------~-~~~~~~-~~~~l~~~~l~----D-t~g~ls-Ge~qrv~ 305 (394)
.....+..+.. ..+...+...+..+. . ...... ..++++.+++. + .++.+| ||+||+.
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHH
Confidence 11344444543 122233433333110 0 011111 13556666663 2 578888 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWS 378 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~ 378 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++.++ +.++|+++ |+.+.+... +++++++
T Consensus 156 -------laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~s-----H~~~~~~~~~d~i~~l~ 220 (228)
T cd03257 156 -------IARALALNPKLLIADEPTSALDVSV---QAQILDLLKKLQEELGLTLLFIT-----HDLGVVAKIADRVAVMY 220 (228)
T ss_pred -------HHHHHhcCCCEEEecCCCCCCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhcCeEEEEe
Confidence 99999999999999 788876 78888999888765 77888888 888888765 9999999
Q ss_pred cceeeec
Q 016165 379 LGKVLNT 385 (394)
Q Consensus 379 ~G~i~~~ 385 (394)
+|+++..
T Consensus 221 ~G~i~~~ 227 (228)
T cd03257 221 AGKIVEE 227 (228)
T ss_pred CCEEEec
Confidence 9998754
No 128
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=4.1e-20 Score=172.87 Aligned_cols=184 Identities=17% Similarity=0.269 Sum_probs=129.8
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-CCce
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-PGNT 252 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-~~~~ 252 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+.... ....
T Consensus 6 ~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 6 HLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--------YQHGS--ITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEECCCCCCcEE
Confidence 45667766 5699999999887 999999999999999999999983 33333 22333222111 1123
Q ss_pred eeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhc
Q 016165 253 VAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
+.++....+...+...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+. +|++++.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~-------laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVG-------IARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHH-------HHHHHhcC
Confidence 444444334444444443211 1122334566777777753 578889 9999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhc--cceeeecC
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWS--LGKVLNTP 386 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~--~G~i~~~~ 386 (394)
|+++|+ .+|+.. ...+.++|+.+.+ .+.++|+++ |+.+.+..+ +++++++ +|+++...
T Consensus 147 p~lllLDEPt~~LD~~~---~~~l~~~L~~~~~~~g~tviivs-----H~~~~~~~~~d~i~~l~~~~G~i~~~~ 213 (255)
T PRK11248 147 PQLLLLDEPFGALDAFT---REQMQTLLLKLWQETGKQVLLIT-----HDIEEAVFMATELVLLSPGPGRVVERL 213 (255)
T ss_pred CCEEEEeCCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEeCCCcEEEEEe
Confidence 999999 888876 7888889988854 477888888 888888776 8999998 59987653
No 129
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.9e-20 Score=171.92 Aligned_cols=194 Identities=21% Similarity=0.265 Sum_probs=134.3
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| ....|..++ +.+.+.+...
T Consensus 7 ~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~~~~~~G~--i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 7 RDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL---YPEARVSGE--VYLDGQDIFKMDVIE 79 (250)
T ss_pred EeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCCCCceE--EEECCEECCcCCHHH
Confidence 345667776 5699999999887 9999999999999999999998731 000123343 3334433211
Q ss_pred -cCCceeeeccCCCCCcccccccccch---------hhhhhcCCccccccceee-------c-CCCCCc-hhhhhhhccc
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS---------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~~ 308 (394)
.....++++....+...+...+..+. ..+..+.+.++++.+++. | .+..+| ||+||+.
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~--- 156 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC--- 156 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH---
Confidence 12344555554444455555444211 011223345566666652 2 567888 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++.+ +.++++++ |+.+.+... ++++++++|++
T Consensus 157 ----laral~~~p~lllLDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~s-----H~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14247 157 ----IARALAFQPEVLLADEPTANLDPEN---TAKIESLFLELKK-DMTIVLVT-----HFPQQAARISDYVAFLYKGQI 223 (250)
T ss_pred ----HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CCEEEEEe-----CCHHHHHHhcCEEEEEECCeE
Confidence 99999999999999 888876 7888899988864 67777777 888887765 99999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..++..++
T Consensus 224 ~~~g~~~~~ 232 (250)
T PRK14247 224 VEWGPTREV 232 (250)
T ss_pred EEECCHHHH
Confidence 877665544
No 130
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.4e-20 Score=180.60 Aligned_cols=196 Identities=16% Similarity=0.178 Sum_probs=137.2
Q ss_pred eeeeeecC--CcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---
Q 016165 176 EVTYRFND--FVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI--- 248 (394)
Q Consensus 176 ~~~~~~~~--~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~--- 248 (394)
++++.|.. ....++++++|++.+ +++|+|+||||||||+++|+|...+ . ..|..++ +.+.+++....
T Consensus 8 ~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~--~--~~~~~G~--i~~~g~~i~~~~~~ 81 (330)
T PRK15093 8 NLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKD--N--WRVTADR--MRFDDIDLLRLSPR 81 (330)
T ss_pred eeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCC--C--CCCcceE--EEECCEECCcCCHH
Confidence 44556631 114589999999887 9999999999999999999998841 0 0123333 34444432211
Q ss_pred -------CCceeeeccCCC-C-Ccccccccccc------------hh-hhhhcCCccccccceeec-------CCCCCc-
Q 016165 249 -------PGNTVAVQADMP-F-SGLTTFGTAFL------------SK-FECSQMPHSLLEHITLVD-------TPGVLS- 298 (394)
Q Consensus 249 -------~~~~~~~~~~~~-~-~g~~~~~~~~~------------~~-~~~~~~~~~~l~~~~l~D-------t~g~ls- 298 (394)
....+++|.... + ...+...+... .. .+..+.+.++++.+++.+ .|..+|
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 134455555431 1 12222221110 00 122345677888888852 678899
Q ss_pred hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-
Q 016165 299 GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV- 371 (394)
Q Consensus 299 Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~- 371 (394)
||+||+. +|++++.+|+++|+ .+|+.. +.++.++|+++.++ +.++|+|+ |+.+.+..+
T Consensus 162 G~~QRv~-------iArAL~~~P~llilDEPts~LD~~~---~~~i~~lL~~l~~~~g~tii~it-----Hdl~~v~~~~ 226 (330)
T PRK15093 162 GECQKVM-------IAIALANQPRLLIADEPTNAMEPTT---QAQIFRLLTRLNQNNNTTILLIS-----HDLQMLSQWA 226 (330)
T ss_pred HHHHHHH-------HHHHHHCCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHHhcCCEEEEEE-----CCHHHHHHhC
Confidence 9999999 99999999999999 888876 88899999998774 78888888 888888887
Q ss_pred HhHhhhccceeeecCccceee
Q 016165 372 YGALMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 372 ~~~~~~~~G~i~~~~~~~~v~ 392 (394)
+++++|+.|+++..|+..+++
T Consensus 227 dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 227 DKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999887765554
No 131
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.82 E-value=4e-20 Score=168.36 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=130.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IP 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~ 249 (394)
++++.|.. .+.+++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... ..
T Consensus 5 ~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 5 KVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--------PASGS--IKVNDQSHTGLAPYQR 70 (213)
T ss_pred eeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--------CCCcE--EEECCEEcccCChhcc
Confidence 34556653 45688888876 999999999999999999999983 33333 2233332211 11
Q ss_pred CceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
...++++....+.+.+..++..+. .....+.+.++++.+++.+ .+..+| ||+||+. +|+++
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral 143 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVA-------LARCL 143 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHH-------HHHHH
Confidence 234455555555555555544211 1112334566777777754 577888 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
+.+|+++|+ .+|... ...+.++++++.++ +.++|+++ |+.+.+.++ ++++++++|+++..+++
T Consensus 144 ~~~p~llllDEPt~~LD~~~---~~~~~~~l~~~~~~~~~tii~vs-----h~~~~~~~~~d~v~~l~~g~i~~~~~~ 213 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLL---REEMLALVKQLCSERQRTLLMVT-----HHLSDARAIASQIAVVSQGKIKVVSDC 213 (213)
T ss_pred hcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHhhcCeEEEEECCeEEEecCC
Confidence 999999999 888876 78888999988754 67788887 788887775 99999999999887763
No 132
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.2e-20 Score=175.69 Aligned_cols=191 Identities=18% Similarity=0.219 Sum_probs=133.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
.++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 7 ~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 7 RDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--------PTSGS--VLIRGEPITKENIRE 75 (277)
T ss_pred EEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEECCcCCHHH
Confidence 3556677531 3589999999887 999999999999999999999983 33343 2333332211
Q ss_pred -cCCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 -IPGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 -~~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
.....++++... .+...+...+..+. .....+.+.++++.+++.+ .+..+| ||+||+. +
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~-------l 148 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVA-------I 148 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHH-------H
Confidence 112344444431 12223333333111 1112234566777777753 688889 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
|++++.+|+++|+ .+|+.. ...+.++++++.++ +.++++++ |+.+++.+. ++++++++|+++..+
T Consensus 149 araL~~~p~llilDEPt~gLD~~~---~~~l~~~l~~l~~~~g~tvli~t-----H~~~~~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQG---VKELIDFLNDLPETYGMTVIFST-----HQLDLVPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHHhCCEEEEEECCeEEEEC
Confidence 9999999999999 888876 78888999988765 77888888 888888776 999999999999877
Q ss_pred cccee
Q 016165 387 EVVRV 391 (394)
Q Consensus 387 ~~~~v 391 (394)
+..++
T Consensus 221 ~~~~~ 225 (277)
T PRK13652 221 TVEEI 225 (277)
T ss_pred CHHHH
Confidence 66554
No 133
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.8e-20 Score=172.65 Aligned_cols=190 Identities=20% Similarity=0.251 Sum_probs=131.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
.++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 7 ~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 7 KEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--------PTEGS--ILIDGVDIKTIDVID 74 (241)
T ss_pred EeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEEhhhcChHH
Confidence 355667765 5699999999887 999999999999999999999884 33333 2223322111
Q ss_pred -cCCceeeeccCCCCCcccccccccchh---hhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLSK---FECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
.....+.++....+. .+...+..+.. ......+.++++.+++. + .+..+| ||+||+. +|+++
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~-------la~al 146 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVS-------IARTL 146 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH-------HHHHH
Confidence 112334444433332 23333321110 01122345566667664 2 577888 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
+.+|+++|+ .+|... ...+.++++.+.++ +.++|+++ |+.+.+..+ ++++++++|+++..+.+.+
T Consensus 147 ~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tii~~s-----H~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTS---TEIIEELIVKLKNKMNLTVIWIT-----HNMEQAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred hcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----ccHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 999999999 888866 77888889888764 78888888 888888776 9999999999987766655
Q ss_pred ee
Q 016165 391 VY 392 (394)
Q Consensus 391 v~ 392 (394)
++
T Consensus 219 ~~ 220 (241)
T PRK14250 219 FF 220 (241)
T ss_pred Hh
Confidence 43
No 134
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.4e-20 Score=171.03 Aligned_cols=189 Identities=20% Similarity=0.271 Sum_probs=135.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IP 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~ 249 (394)
+++++|++ +.+++++++++.+ +++|+|+||+|||||+++|+|... |..+. +.+.+++... ..
T Consensus 5 ~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 5 NVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--------PTSGE--ILLDGKDITNLPPHKR 72 (232)
T ss_pred eEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEEcCcCChhhc
Confidence 44567766 5699999999888 999999999999999999999984 33333 2233332211 12
Q ss_pred CceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
...++.+....+.+.+...+..+. .....+.+.++++.+++.+ .+..+| ||+||+. +||++
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~-------laral 145 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVA-------IARAL 145 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHH
Confidence 344455555555555554443211 1112334456667777753 567788 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
+.+|+++|+ ++|+.. ...+.++++.+.++ +.++++++ |+.+++.+. ++++.+++|++...++..+
T Consensus 146 ~~~p~llllDEP~~gLD~~~---~~~l~~~l~~~~~~~~~tiii~s-----h~~~~~~~~~d~i~~l~~G~~~~~~~~~~ 217 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKL---RKDMQLELKRLQKELGITFVFVT-----HDQEEALTMSDRIAVMNKGKIQQIGTPEE 217 (232)
T ss_pred hcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999999 888876 78888899888764 78888888 888888776 9999999999987776544
Q ss_pred e
Q 016165 391 V 391 (394)
Q Consensus 391 v 391 (394)
+
T Consensus 218 ~ 218 (232)
T cd03300 218 I 218 (232)
T ss_pred H
Confidence 3
No 135
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.81 E-value=3.1e-20 Score=174.42 Aligned_cols=192 Identities=18% Similarity=0.235 Sum_probs=134.3
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
.++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| .. +..++ +.+.+.+...
T Consensus 8 ~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~--~~~G~--i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 8 EKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITG---DK--SAGSH--IELLGRTVQREGRLA 78 (262)
T ss_pred eeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCC---CC--CCceE--EEECCEecccccccc
Confidence 455667776 5699999999887 9999999999999999999999842 10 00122 2233322110
Q ss_pred ------cCCceeeeccCCCCCcccccccccch---------------hhhhhcCCccccccceeec----CCCCCc-hhh
Q 016165 248 ------IPGNTVAVQADMPFSGLTTFGTAFLS---------------KFECSQMPHSLLEHITLVD----TPGVLS-GEK 301 (394)
Q Consensus 248 ------~~~~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~ 301 (394)
.....+.++....+.+.+...+..+. .....+.+.++++.+++.+ .++.+| ||+
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHH
Confidence 11234444444334444443333110 1122344567777777753 678889 999
Q ss_pred hhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhH
Q 016165 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGA 374 (394)
Q Consensus 302 qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~ 374 (394)
||+. +||+++.+|+++|+ .+|... ...+.++|+.+.++ +.++|+++ |+.+.+..+ +++
T Consensus 159 qrv~-------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tvii~t-----H~~~~~~~~~d~i 223 (262)
T PRK09984 159 QRVA-------IARALMQQAKVILADEPIASLDPES---ARIVMDTLRDINQNDGITVVVTL-----HQVDYALRYCERI 223 (262)
T ss_pred HHHH-------HHHHHhcCCCEEEecCccccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEE
Confidence 9999 99999999999999 888876 78888999988754 77888888 888887776 999
Q ss_pred hhhccceeeecCccce
Q 016165 375 LMWSLGKVLNTPEVVR 390 (394)
Q Consensus 375 ~~~~~G~i~~~~~~~~ 390 (394)
+++++|+++..++..+
T Consensus 224 ~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 224 VALRQGHVFYDGSSQQ 239 (262)
T ss_pred EEEECCEEEEeCCHHH
Confidence 9999999987766543
No 136
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4e-20 Score=168.49 Aligned_cols=182 Identities=20% Similarity=0.245 Sum_probs=129.2
Q ss_pred ceeeeeecCCcCcccccCCCCccc-EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------- 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~-~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------- 246 (394)
.+++++|++ ..+ +++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+..
T Consensus 4 ~~l~~~~~~--~~~--~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 69 (214)
T cd03297 4 VDIEKRLPD--FTL--KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEK--------PDGGT--IVLNGTVLFDSRKKIN 69 (214)
T ss_pred eeeeEecCC--eee--CceEEEcceeEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEecccccchhh
Confidence 367788887 334 88888776 999999999999999999999984 33333 222222111
Q ss_pred ---ccCCceeeeccCCCCCcccccccccch-----hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 247 ---SIPGNTVAVQADMPFSGLTTFGTAFLS-----KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 247 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
......++.+....+.+.+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+. +
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------l 142 (214)
T cd03297 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVA-------L 142 (214)
T ss_pred hhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHH-------H
Confidence 011344455555444444544443211 1122334566777777743 678889 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
|++++.+|+++|+ .+|+.. ...+.++++++.++ +.++++++ |+.+++..+ ++++++++|+++..
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 143 ARALAAQPELLLLDEPFSALDRAL---RLQLLPELKQIKKNLNIPVIFVT-----HDLSEAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCcEEEEEe-----cCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999 888876 78888999888664 77888888 888888776 99999999998764
No 137
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.6e-20 Score=179.91 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=131.6
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---------CCceee
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---------PGNTVA 254 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---------~~~~~~ 254 (394)
..++++++|++.. +++|+|+||||||||+++|+|... |..++ +.+.+.+.... ....++
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--------p~~G~--i~~~g~~l~~~~~~~~~~~r~~i~~v 97 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--------PTGGE--LYYQGQDLLKADPEAQKLLRQKIQIV 97 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--------CCCcE--EEECCEEcCcCCHHHHHHHhCCEEEE
Confidence 3589999999887 999999999999999999999983 23333 33333332111 123445
Q ss_pred eccCC--CCCccccccccc--------chhhhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHh
Q 016165 255 VQADM--PFSGLTTFGTAF--------LSKFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (394)
Q Consensus 255 ~~~~~--~~~g~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~ 318 (394)
+|... ....++...+.. +...+..+.+.++++.+++.+ .|+.+| ||+||+. ||++++
T Consensus 98 ~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~-------iArAL~ 170 (327)
T PRK11308 98 FQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIA-------IARALM 170 (327)
T ss_pred EcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHH-------HHHHHH
Confidence 55532 111122211110 112233455677888887742 788999 9999999 999999
Q ss_pred hcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 319 ~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
.+|+++|+ ++|... +.+++++|.+++++ +.++++|+ |+...+..+ |++++|+.|++++.++..++
T Consensus 171 ~~P~lLilDEPts~LD~~~---~~~i~~lL~~l~~~~g~til~iT-----Hdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 171 LDPDVVVADEPVSALDVSV---QAQVLNLMMDLQQELGLSYVFIS-----HDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred cCCCEEEEECCCccCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999 888876 88899999998764 78888888 888888876 99999999999988776555
Q ss_pred e
Q 016165 392 Y 392 (394)
Q Consensus 392 ~ 392 (394)
+
T Consensus 243 ~ 243 (327)
T PRK11308 243 F 243 (327)
T ss_pred h
Confidence 3
No 138
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.2e-20 Score=172.66 Aligned_cols=194 Identities=20% Similarity=0.302 Sum_probs=133.0
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
.-+++++|++ ..++++++|++.+ +++|+|+||||||||+++|+|... .....|..+. +.+.+++...
T Consensus 9 ~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~--i~~~g~~i~~~~~~ 81 (253)
T PRK14242 9 ARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND---LIPGARVEGE--ILLDGENIYDPHVD 81 (253)
T ss_pred EeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc---cCCCCCCceE--EEECCEEccccccC
Confidence 3455667876 5699999999887 999999999999999999999852 0000123333 3334433211
Q ss_pred ----cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceee-------c-CCCCCc-hhhhhhhc
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQR 306 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~ 306 (394)
.....++.+....+.. +..++..+. .....+.+.++++.+++. + .++.+| ||+||+.
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~- 159 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC- 159 (253)
T ss_pred HHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH-
Confidence 1234555555444442 444443211 011223344555555552 2 578889 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+|++++.+|+++|+ .+|+.. ...+.++|+++++ +.++++++ |+.+.+.+. ++++++++|
T Consensus 160 ------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tvii~t-----H~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 160 ------IARALAVEPEVLLMDEPASALDPIA---TQKIEELIHELKA-RYTIIIVT-----HNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred ------HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHhc-CCeEEEEE-----ecHHHHHHhCCEEEEEECC
Confidence 99999999999999 888876 7888899998854 67778887 788888776 999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..+...++
T Consensus 225 ~i~~~g~~~~~ 235 (253)
T PRK14242 225 KLIEVGPTEQI 235 (253)
T ss_pred EEEEeCCHHHH
Confidence 99877665543
No 139
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.81 E-value=3e-20 Score=185.29 Aligned_cols=201 Identities=20% Similarity=0.306 Sum_probs=150.7
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc--
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-- 247 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-- 247 (394)
+++|.++|...+....+++|+||++.+ +++|+|.+||||||+.++|.|...++ . ....++ +.+.+++...
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~---~-~~~~G~--I~~~g~dl~~l~ 81 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG---G-RITSGE--VILDGRDLLGLS 81 (539)
T ss_pred EeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCC---C-cccceE--EEECCcchhcCC
Confidence 556666654443334699999999988 99999999999999999999998521 1 111233 4455543221
Q ss_pred ------cC--CceeeeccCCC-CCccccccccc---------chhhhhhcCCccccccceeec------CCCCCc-hhhh
Q 016165 248 ------IP--GNTVAVQADMP-FSGLTTFGTAF---------LSKFECSQMPHSLLEHITLVD------TPGVLS-GEKQ 302 (394)
Q Consensus 248 ------~~--~~~~~~~~~~~-~~g~~~~~~~~---------~~~~~~~~~~~~~l~~~~l~D------t~g~ls-Ge~q 302 (394)
+. .+.+.+|+.+. ++.....++.. ....+..+.+.++|+.+++.| .|..+| ||+|
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 12 23446666543 33333333321 113356777888999999865 688899 8999
Q ss_pred hhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHh
Q 016165 303 RTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGAL 375 (394)
Q Consensus 303 rv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~ 375 (394)
|+. ||++++.+|+++|+ .+|++. +.+++++|+.+++ .|+.+++|+ ||...+.++ |+++
T Consensus 162 Rv~-------iAmALa~~P~LLIaDEPTTaLDvt~---q~qIL~llk~l~~e~g~a~l~IT-----HDl~Vva~~aDrv~ 226 (539)
T COG1123 162 RVM-------IAMALALKPKLLIADEPTTALDVTT---QAQILDLLKDLQRELGMAVLFIT-----HDLGVVAELADRVV 226 (539)
T ss_pred HHH-------HHHHHhCCCCEEEECCCccccCHHH---HHHHHHHHHHHHHHcCcEEEEEc-----CCHHHHHHhcCeEE
Confidence 999 99999999999999 899887 9999999999985 588999998 999999998 9999
Q ss_pred hhccceeeecCccceeec
Q 016165 376 MWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 376 ~~~~G~i~~~~~~~~v~~ 393 (394)
+|+.|++++.|++.++|.
T Consensus 227 Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 227 VMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEECCEEEEecCHHHHHh
Confidence 999999999999888763
No 140
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.81 E-value=3.4e-20 Score=189.80 Aligned_cols=190 Identities=18% Similarity=0.261 Sum_probs=136.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..+. +.+.+.+...
T Consensus 8 ~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--------p~~G~--i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 8 KGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--------RDAGS--ILYLGKEVTFNGPKS 75 (501)
T ss_pred eeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEECCCCCHHH
Confidence 355667876 5699999999877 999999999999999999999984 33333 2223322110
Q ss_pred --cCCceeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccC
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~ 309 (394)
.....++++....+..++...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~---- 151 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVE---- 151 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH----
Confidence 11234455544334444444433110 1122334567777777754 578899 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++++.+.++|+++ |+.+.+..+ ++++++++|+++
T Consensus 152 ---la~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~~~tvii~s-----Hd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 152 ---IAKVLSFESKVIIMDEPTDALTDTE---TESLFRVIRELKSQGRGIVYIS-----HRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred ---HHHHHhcCCCEEEEeCCcCCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999 888876 7888899999877777888888 888888877 999999999998
Q ss_pred ecCcccee
Q 016165 384 NTPEVVRV 391 (394)
Q Consensus 384 ~~~~~~~v 391 (394)
..+...++
T Consensus 221 ~~~~~~~~ 228 (501)
T PRK10762 221 AEREVADL 228 (501)
T ss_pred EecCcCcC
Confidence 77665443
No 141
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.3e-21 Score=165.89 Aligned_cols=191 Identities=20% Similarity=0.288 Sum_probs=137.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCc--
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGN-- 251 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~-- 251 (394)
++++.|++ +.++++++++++. +.+++||||||||||+.+++++.. ...+. +.+.+.+....++.
T Consensus 6 nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--------~d~G~--i~i~g~~~~~~~s~~L 73 (252)
T COG4604 6 NVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--------KDSGE--ITIDGLELTSTPSKEL 73 (252)
T ss_pred hhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--------ccCce--EEEeeeecccCChHHH
Confidence 45668888 7799999999887 999999999999999999999884 22222 23333333222211
Q ss_pred ----eeeeccC-----CCCCccccccccc----chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 252 ----TVAVQAD-----MPFSGLTTFGTAF----LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 252 ----~~~~~~~-----~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
++..|.. +....+..++..- ....+++..++++++.+.+.| ....+| ||+||.. +
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAf-------I 146 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAF-------I 146 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhh-------h
Confidence 0000110 0011111222210 123477888888888888776 566778 8999998 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
|..++++.|.+++ .+|..+ ..+++++++.+.++ ++++++|+ ||.+.+..+ |.++-+++|+++..|
T Consensus 147 AMVlaQdTdyvlLDEPLNNLDmkH---sv~iMk~Lrrla~el~KtiviVl-----HDINfAS~YsD~IVAlK~G~vv~~G 218 (252)
T COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKH---SVQIMKILRRLADELGKTIVVVL-----HDINFASCYSDHIVALKNGKVVKQG 218 (252)
T ss_pred heeeeccCcEEEecCcccccchHH---HHHHHHHHHHHHHHhCCeEEEEE-----ecccHHHhhhhheeeecCCEEEecC
Confidence 9999999999999 888887 78889999988764 88999999 777777777 999999999999999
Q ss_pred ccceeec
Q 016165 387 EVVRVYI 393 (394)
Q Consensus 387 ~~~~v~~ 393 (394)
.+.+++.
T Consensus 219 ~~~eii~ 225 (252)
T COG4604 219 SPDEIIQ 225 (252)
T ss_pred CHHHhcC
Confidence 8887753
No 142
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.81 E-value=3.5e-20 Score=168.71 Aligned_cols=179 Identities=21% Similarity=0.294 Sum_probs=121.6
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-cCCce
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-IPGNT 252 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-~~~~~ 252 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .....
T Consensus 4 ~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------p~~G~--i~~~g~~~~~~~~~i~ 71 (213)
T cd03235 4 DLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--------PTSGS--IRVFGKPLEKERKRIG 71 (213)
T ss_pred cceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--------CCCCE--EEECCccHHHHHhheE
Confidence 34557765 4689999999887 999999999999999999999984 33333 2223322110 11223
Q ss_pred eeeccCCCC--Ccccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHH
Q 016165 253 VAVQADMPF--SGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (394)
Q Consensus 253 ~~~~~~~~~--~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ia 314 (394)
++++..... ...+..++.... .....+.+.++++.+++.+ .++.+| ||+||+. +|
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la 144 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVL-------LA 144 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHH-------HH
Confidence 333332110 112222222110 0112334556677777643 678899 9999999 99
Q ss_pred HHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 315 ral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
++++.+|+++|+ .+|+.. ...+.++++++.+++.++|+++ |+.+++..+ ++++++++|.
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tvi~~s-----H~~~~~~~~~d~i~~l~~~~ 209 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKT---QEDIYELLRELRREGMTILVVT-----HDLGLVLEYFDRVLLLNRTV 209 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhcCEEEEEcCcE
Confidence 999999999999 888876 7888899998876677888888 888888776 8888888763
No 143
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.81 E-value=3.3e-20 Score=170.86 Aligned_cols=189 Identities=20% Similarity=0.261 Sum_probs=131.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 5 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 5 NLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--------VKSGS--IRLDGEDITKLPPHER 72 (230)
T ss_pred eEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCCE--EEECCEECCCCCHHHH
Confidence 45667776 5699999999887 999999999999999999999983 33343 2223322111
Q ss_pred -cCCceeeeccCCCCCcccccccccchh----hhhhcCCccccccce-e---ec-CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLSK----FECSQMPHSLLEHIT-L---VD-TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~l~~~~-l---~D-t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
.....+.++....+.+.+..++..+.. ....+...++++.++ + .| .+..+| ||+||+. +|++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~-------la~a 145 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLA-------IARA 145 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHH-------HHHH
Confidence 112344555544444444444432110 011112234444443 2 22 567788 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ .+|+.. ...+.+++.++.++ +.++|+++ |+.+++..+ ++++++++|+++..++..
T Consensus 146 l~~~p~illlDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~s-----H~~~~~~~~~d~v~~l~~g~i~~~~~~~ 217 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSI---IKDIGRVIRRLRAEGGMAILLVE-----QYLDFARELADRYYVMERGRVVASGAGD 217 (230)
T ss_pred HhcCCCEEEecCCcccCCHHH---HHHHHHHHHHHHHcCCcEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999 888876 78888999888764 77888888 888888876 999999999998877655
Q ss_pred ee
Q 016165 390 RV 391 (394)
Q Consensus 390 ~v 391 (394)
++
T Consensus 218 ~~ 219 (230)
T TIGR03410 218 EL 219 (230)
T ss_pred Hc
Confidence 43
No 144
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.1e-20 Score=178.00 Aligned_cols=193 Identities=17% Similarity=0.272 Sum_probs=136.0
Q ss_pred CceeeeeecCCc---CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--
Q 016165 174 PLEVTYRFNDFV---SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-- 246 (394)
Q Consensus 174 ~l~~~~~~~~~~---~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~-- 246 (394)
.-++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+..
T Consensus 24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--------p~~G~--I~i~g~~~~~~ 93 (320)
T PRK13631 24 VKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--------SKYGT--IQVGDIYIGDK 93 (320)
T ss_pred EEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCCe--EEECCEEcccc
Confidence 345666776421 2599999999887 999999999999999999999984 33333 222221110
Q ss_pred --------------------ccCCceeeeccC--CCCCcccccccccch-------hhhhhcCCccccccceee-c----
Q 016165 247 --------------------SIPGNTVAVQAD--MPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLV-D---- 292 (394)
Q Consensus 247 --------------------~~~~~~~~~~~~--~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~-D---- 292 (394)
......++++.. ..+.. +..++..+. ..+..+.+.++++.+++. +
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 011234455543 22322 444443211 112334566777777774 2
Q ss_pred CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH
Q 016165 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (394)
Q Consensus 293 t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~ 366 (394)
.+..+| ||+||+. +||+++.+|+++|+ ++|+.. ...+.+++..+.+++.++|+++ |+.+
T Consensus 173 ~~~~LSgGqkqRva-------iAraL~~~p~iLLLDEPtsgLD~~~---~~~l~~~L~~l~~~g~Tiiivt-----Hd~~ 237 (320)
T PRK13631 173 SPFGLSGGQKRRVA-------IAGILAIQPEILIFDEPTAGLDPKG---EHEMMQLILDAKANNKTVFVIT-----HTME 237 (320)
T ss_pred CcccCCHHHHHHHH-------HHHHHHcCCCEEEEECCccCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----cCHH
Confidence 567788 9999999 99999999999999 888876 7888899988877788888888 8888
Q ss_pred HHHHH-HhHhhhccceeeecCccceee
Q 016165 367 QLMRV-YGALMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 367 ~~~~~-~~~~~~~~G~i~~~~~~~~v~ 392 (394)
.+... ++++++++|+++..|...+++
T Consensus 238 ~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 238 HVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 77665 999999999999888766543
No 145
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.81 E-value=3.9e-20 Score=170.19 Aligned_cols=185 Identities=21% Similarity=0.252 Sum_probs=128.6
Q ss_pred ceeeeeecCCc--CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc--
Q 016165 175 LEVTYRFNDFV--SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-- 248 (394)
Q Consensus 175 l~~~~~~~~~~--~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-- 248 (394)
.++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+....
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--------p~~G~--i~~~g~~~~~~~~ 79 (228)
T PRK10584 10 HHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--------GSSGE--VSLVGQPLHQMDE 79 (228)
T ss_pred eeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--------CCCee--EEECCEEcccCCH
Confidence 34566776421 2489999999887 999999999999999999999983 33333 22233221110
Q ss_pred --------CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhccc
Q 016165 249 --------PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 249 --------~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~ 308 (394)
....+..+....+.+.+...+..+. .....+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~--- 156 (228)
T PRK10584 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA--- 156 (228)
T ss_pred HHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH---
Confidence 1234445554444444444443211 1123345567777777754 678889 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+|++++.+|+++|+ ++|+.. ...+.++++++.++ +.++|+++ |+.+.+..+++++++++|++
T Consensus 157 ----la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~s-----H~~~~~~~~d~i~~l~~g~i 224 (228)
T PRK10584 157 ----LARAFNGRPDVLFADEPTGNLDRQT---GDKIADLLFSLNREHGTTLILVT-----HDLQLAARCDRRLRLVNGQL 224 (228)
T ss_pred ----HHHHHhcCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHhCCEEEEEECCEE
Confidence 99999999999999 888766 78888899888654 77888888 77766655689999999998
Q ss_pred ee
Q 016165 383 LN 384 (394)
Q Consensus 383 ~~ 384 (394)
+.
T Consensus 225 ~~ 226 (228)
T PRK10584 225 QE 226 (228)
T ss_pred Ee
Confidence 64
No 146
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.9e-20 Score=171.68 Aligned_cols=194 Identities=21% Similarity=0.272 Sum_probs=133.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| ....|..++ +.+.+++..
T Consensus 8 ~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~~~~~~G~--i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 8 VNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLEL---NEEARVEGE--VRLFGRNIYSPDVDP 80 (253)
T ss_pred EeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc---ccCCCCceE--EEECCEEccccccCh
Confidence 456667876 5699999999887 9999999999999999999999841 100122333 333333221
Q ss_pred --ccCCceeeeccCCCCCcccccccccch---------hhhhhcCCccccccceee--------cCCCCCc-hhhhhhhc
Q 016165 247 --SIPGNTVAVQADMPFSGLTTFGTAFLS---------KFECSQMPHSLLEHITLV--------DTPGVLS-GEKQRTQR 306 (394)
Q Consensus 247 --~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~l~~~~l~--------Dt~g~ls-Ge~qrv~~ 306 (394)
......+.++....+.+.+...+..+. .....+.+.++++.+++. ..++.+| ||+||+.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~- 159 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV- 159 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH-
Confidence 012344555555555555554444211 011122344555555541 2677888 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+||+++.+|+++|+ .+|+.. ...+.++|+.+.+ +.++|+++ |+.+.+..+ ++++++++|
T Consensus 160 ------laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~s-----H~~~~~~~~~d~i~~l~~G 224 (253)
T PRK14267 160 ------IARALAMKPKILLMDEPTANIDPVG---TAKIEELLFELKK-EYTIVLVT-----HSPAQAARVSDYVAFLYLG 224 (253)
T ss_pred ------HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhh-CCEEEEEE-----CCHHHHHhhCCEEEEEECC
Confidence 99999999999999 888876 7888889988865 56777777 888888776 999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..++..++
T Consensus 225 ~i~~~~~~~~~ 235 (253)
T PRK14267 225 KLIEVGPTRKV 235 (253)
T ss_pred EEEEeCCHHHH
Confidence 99877665543
No 147
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.7e-20 Score=171.41 Aligned_cols=195 Identities=18% Similarity=0.264 Sum_probs=134.8
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR----- 246 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~----- 246 (394)
..++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| ....|.+++ +.+.+++..
T Consensus 10 ~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~~~~G~--i~~~g~~i~~~~~~ 82 (254)
T PRK14273 10 TENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDL---VEGIKIEGN--VIYEGKNIYSNNFD 82 (254)
T ss_pred EeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccC---CcCCCCceE--EEECCEeccccccc
Confidence 3455667776 5699999999887 9999999999999999999999842 111123444 333333211
Q ss_pred ---ccCCceeeeccCCCCCcccccccccchh--------hhhhcCCcccccccee-------ec-CCCCCc-hhhhhhhc
Q 016165 247 ---SIPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQR 306 (394)
Q Consensus 247 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv~~ 306 (394)
...+..+..+....+. .+...+..+.. ....+.+.++++.+++ .| .++.+| ||+||+.
T Consensus 83 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~- 160 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC- 160 (254)
T ss_pred HHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH-
Confidence 1123455555544442 44444432111 1112334455555554 22 467888 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+||+++.+|+++|+ ++|+.. ...+.++|+.+++ +.++|+++ |+.+.+..+ ++++++++|
T Consensus 161 ------laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~-~~tvii~s-----H~~~~~~~~~d~i~~l~~G 225 (254)
T PRK14273 161 ------IARTLAIEPNVILMDEPTSALDPIS---TGKIEELIINLKE-SYTIIIVT-----HNMQQAGRISDRTAFFLNG 225 (254)
T ss_pred ------HHHHHHcCCCEEEEeCCCcccCHHH---HHHHHHHHHHHhc-CCEEEEEe-----CCHHHHHHhCCEEEEEECC
Confidence 99999999999999 888876 7888899998864 67777777 788887776 999999999
Q ss_pred eeeecCccceee
Q 016165 381 KVLNTPEVVRVY 392 (394)
Q Consensus 381 ~i~~~~~~~~v~ 392 (394)
+++..+.+.+++
T Consensus 226 ~i~~~g~~~~~~ 237 (254)
T PRK14273 226 CIEEESSTDELF 237 (254)
T ss_pred EEEEeCCHHHHH
Confidence 999877765543
No 148
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.9e-20 Score=175.63 Aligned_cols=192 Identities=16% Similarity=0.250 Sum_probs=135.7
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+..
T Consensus 9 ~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--------p~~G~--i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 9 EELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--------PSSGR--ILFDGKPIDYSRKGL 77 (283)
T ss_pred EeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCccE--EEECCEECCCCcchH
Confidence 3556677521 4699999998887 999999999999999999999983 33333 233333221
Q ss_pred --ccCCceeeeccCC-CCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 247 --SIPGNTVAVQADM-PFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 247 --~~~~~~~~~~~~~-~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
......+.++... .+...+..++..+ ...+..+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~------ 151 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA------ 151 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHH------
Confidence 0123444444431 1112233333311 11122344667777788754 678888 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ ++|+.. ...+.++++.+.++ +.++++++ |+.+.+..+ ++++++++|+++.
T Consensus 152 -laraL~~~p~lLilDEPt~gLD~~~---~~~l~~~l~~l~~~~g~tillvs-----H~~~~~~~~~dri~~l~~G~i~~ 222 (283)
T PRK13636 152 -IAGVLVMEPKVLVLDEPTAGLDPMG---VSEIMKLLVEMQKELGLTIIIAT-----HDIDIVPLYCDNVFVMKEGRVIL 222 (283)
T ss_pred -HHHHHHcCCCEEEEeCCccCCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----cCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999 888876 77888999988764 78888888 888888776 9999999999998
Q ss_pred cCccceee
Q 016165 385 TPEVVRVY 392 (394)
Q Consensus 385 ~~~~~~v~ 392 (394)
.|...+++
T Consensus 223 ~g~~~~~~ 230 (283)
T PRK13636 223 QGNPKEVF 230 (283)
T ss_pred eCCHHHHh
Confidence 87765543
No 149
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.81 E-value=5.5e-20 Score=169.41 Aligned_cols=177 Identities=20% Similarity=0.302 Sum_probs=124.3
Q ss_pred ccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-CCceeeeccCCCCCcccc
Q 016165 190 TNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-PGNTVAVQADMPFSGLTT 266 (394)
Q Consensus 190 ~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 266 (394)
++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+++.... +...++.+....+...+.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv 71 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--------PTSGG--VILEGKQITEPGPDRMVVFQNYSLLPWLTV 71 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEECCCCChhheEEecCcccCCCCCH
Confidence 566777666 999999999999999999999983 33333 23333322111 112344454444444444
Q ss_pred cccccch---------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----E
Q 016165 267 FGTAFLS---------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----L 327 (394)
Q Consensus 267 ~~~~~~~---------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~ 327 (394)
..+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+. +|++++.+|+++|+ +
T Consensus 72 ~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 72 RENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVA-------IARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEcCCCcC
Confidence 4443111 1122334566777777754 678889 9999999 99999999999999 8
Q ss_pred eCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 328 FDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 328 lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
+|+.. ...+.+++.++.++ +.++|+++ |+.+++..+ ++++++++|+++..+++.++
T Consensus 145 LD~~~---~~~l~~~l~~~~~~~~~tii~~s-----H~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 145 LDALT---RGNLQEELMQIWEEHRVTVLMVT-----HDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 88876 78888988888654 77888888 888888776 99999999999887765443
No 150
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.7e-20 Score=173.90 Aligned_cols=192 Identities=16% Similarity=0.260 Sum_probs=131.3
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
.++++.|++....+++++++++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 11 ~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--------~~~G~--i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 11 KNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--------VKSGE--IFYNNQAITDDNFEK 80 (269)
T ss_pred EEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEECCcCCHHH
Confidence 455667765223489999999887 999999999999999999999983 33333 3333332211
Q ss_pred -cCCceeeeccCC-CCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 -IPGNTVAVQADM-PFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 -~~~~~~~~~~~~-~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
.....+.++... .+.+.+...+..+ ......+.+.++++.+++.+ .++.+| ||+||+. +
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------l 153 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVA-------I 153 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHH-------H
Confidence 112344444432 2333332222211 11122234556667776643 677888 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~ 387 (394)
||+++.+|+++|+ ++|+.. ...+.++++++.++ +.++|+++ |+.+.+..+++++++++|+++..++
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~---~~~l~~~L~~~~~~~~~tiiivt-----H~~~~~~~~d~i~~l~~G~i~~~g~ 225 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDA---RQNLLDLVRKVKSEHNITIISIT-----HDLSEAMEADHVIVMNKGTVYKEGT 225 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCchHHhcCCEEEEEECCEEEEecC
Confidence 9999999999999 888876 78888899888764 77888888 6666665569999999999987776
Q ss_pred ccee
Q 016165 388 VVRV 391 (394)
Q Consensus 388 ~~~v 391 (394)
..++
T Consensus 226 ~~~~ 229 (269)
T PRK13648 226 PTEI 229 (269)
T ss_pred HHHH
Confidence 5543
No 151
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=7.2e-20 Score=168.87 Aligned_cols=186 Identities=19% Similarity=0.289 Sum_probs=129.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IP 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~ 249 (394)
++++.|++ . ..+++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+++... ..
T Consensus 6 ~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 6 DITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--------PASGS--LTLNGQDHTTTPPSRR 71 (232)
T ss_pred EEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCeecCcCChhhc
Confidence 45667764 2 2378888776 999999999999999999999984 33333 2233322111 11
Q ss_pred CceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
...+.++....+.+.+...+.... .....+.+.++++.+++.+ .+..+| ||+||+. +|+++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral 144 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVA-------LARCL 144 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHH-------HHHHH
Confidence 234444544444444444433111 1122334566777777743 678899 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
+.+|+++|+ .+|+.. ...+.++++.+.++ +.++|+++ |+.+++.++ ++++.+++|+++..++..+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~---~~~~~~~l~~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 145 VREQPILLLDEPFSALDPAL---RQEMLTLVSQVCQERQLTLLMVS-----HSLEDAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred hcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEE-----CCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999 888876 77888999888654 77888888 888888776 9999999999987765543
No 152
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.81 E-value=7.2e-20 Score=169.95 Aligned_cols=189 Identities=17% Similarity=0.201 Sum_probs=129.3
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|.... .|..+. +.+.+.+...
T Consensus 5 ~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~~~G~--i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 5 DLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSY------EVTSGT--ILFKGQDLLELEPDER 74 (243)
T ss_pred eEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCCcce--EEECCEecCCCCHHHh
Confidence 45667765 5699999999887 9999999999999999999998410 122333 2233322111
Q ss_pred -cCCceeeeccCCCCCcccccccccc--------------hhhhhhcCCccccccceee----c-CCC-CCc-hhhhhhh
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFL--------------SKFECSQMPHSLLEHITLV----D-TPG-VLS-GEKQRTQ 305 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~~~~~l~~~~l~----D-t~g-~ls-Ge~qrv~ 305 (394)
..+..++.+....+.+.+...+... ...+..+.+.++++.+++. + .++ .+| ||+||+.
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~ 154 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE 154 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH
Confidence 0123334444444444433332210 0011123345666666664 2 355 488 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHH--HHhHhhhc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMR--VYGALMWS 378 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~--~~~~~~~~ 378 (394)
+|++++.+|+++|+ .+|... ...+.++|+++.+++.++|+++ |+.+.+.. ++++++++
T Consensus 155 -------la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tvi~vs-----H~~~~~~~~~~d~i~~l~ 219 (243)
T TIGR01978 155 -------ILQMALLEPKLAILDEIDSGLDIDA---LKIVAEGINRLREPDRSFLIIT-----HYQRLLNYIKPDYVHVLL 219 (243)
T ss_pred -------HHHHHhcCCCEEEecCCcccCCHHH---HHHHHHHHHHHHHCCcEEEEEE-----ecHHHHHhhcCCeEEEEe
Confidence 99999999999999 888876 7888899999877678888888 77878776 38899999
Q ss_pred cceeeecCccc
Q 016165 379 LGKVLNTPEVV 389 (394)
Q Consensus 379 ~G~i~~~~~~~ 389 (394)
+|+++..+.+.
T Consensus 220 ~G~i~~~g~~~ 230 (243)
T TIGR01978 220 DGRIVKSGDVE 230 (243)
T ss_pred CCEEEEecCHH
Confidence 99998776654
No 153
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.81 E-value=6.9e-20 Score=172.38 Aligned_cols=182 Identities=23% Similarity=0.251 Sum_probs=128.1
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---------cCCceee
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---------IPGNTVA 254 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---------~~~~~~~ 254 (394)
..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .....++
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~i~~~~~~~~~~~~~~i~~v 93 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--------PAQGT--VSFRGQDLYQLDRKQRRAFRRDVQLV 93 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEEccccCHHHHHHHhhceEEE
Confidence 4589999999887 999999999999999999999983 33333 2233322211 1124444
Q ss_pred eccCC--CCCccccccccc--------chhhhhhcCCccccccceee----c-CCCCCc-hhhhhhhcccChHHHHHHHh
Q 016165 255 VQADM--PFSGLTTFGTAF--------LSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (394)
Q Consensus 255 ~~~~~--~~~g~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~----D-t~g~ls-Ge~qrv~~~~~~~~iaral~ 318 (394)
++... .+...+...+.. +......+.+.++++.+++. + .++.+| ||+||+. +||+++
T Consensus 94 ~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~-------laral~ 166 (265)
T TIGR02769 94 FQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN-------IARALA 166 (265)
T ss_pred ecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH-------HHHHHh
Confidence 55431 222233333221 01112234456677777774 2 567888 9999999 999999
Q ss_pred hcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 319 ~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
.+|+++|+ .+|+.. ...+.++++++.+. +.++|+++ |+.+.+..+ ++++++++|+++..++..++
T Consensus 167 ~~p~illLDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tiiivs-----H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 167 VKPKLIVLDEAVSNLDMVL---QAVILELLRKLQQAFGTAYLFIT-----HDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred cCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEe-----CCHHHHHHHhcEEEEEeCCEEEEECCHHHH
Confidence 99999999 788765 77888999888764 77888888 888888775 99999999999987776554
Q ss_pred e
Q 016165 392 Y 392 (394)
Q Consensus 392 ~ 392 (394)
+
T Consensus 239 ~ 239 (265)
T TIGR02769 239 L 239 (265)
T ss_pred c
Confidence 3
No 154
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.5e-20 Score=187.89 Aligned_cols=192 Identities=17% Similarity=0.222 Sum_probs=139.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+|+|+|...| .|..+. +.+.+.+...
T Consensus 9 ~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~------~~~~G~--i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 9 KNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH------GTYEGE--IIFEGEELQASNIRD 78 (506)
T ss_pred eeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC------CCCCeE--EEECCEECCCCCHHH
Confidence 456677876 5699999999887 9999999999999999999998841 012333 3333332211
Q ss_pred --cCCceeeeccCCCCCcccccccccch----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLS----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
.....++++....+..++...+..+. .....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~----- 153 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE----- 153 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH-----
Confidence 12345555655444455544443211 1122334567777887753 678899 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ .+|+.. ...+.+++.++.+++.++|+++ |+.+.+..+ |+++++++|+++.
T Consensus 154 --la~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~~~tvi~~t-----H~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 154 --IAKALNKQARLLILDEPTASLTESE---TAVLLDIIRDLKAHGIACIYIS-----HKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred --HHHHHhcCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CcHHHHHHhcCEEEEEECCEEee
Confidence 99999999999999 888876 8888899999877778888888 888888876 9999999999987
Q ss_pred cCcccee
Q 016165 385 TPEVVRV 391 (394)
Q Consensus 385 ~~~~~~v 391 (394)
.+...++
T Consensus 224 ~~~~~~~ 230 (506)
T PRK13549 224 TRPAAGM 230 (506)
T ss_pred ecccccC
Confidence 7665543
No 155
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.9e-20 Score=184.59 Aligned_cols=102 Identities=25% Similarity=0.450 Sum_probs=98.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhc
Q 016165 6 GPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD 85 (394)
Q Consensus 6 ~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~ 85 (394)
...|.+....|.+|+++|+.+|+..+|++||.+|+..|++||||+.+|++||.|+|+|+||.|+-+||++|||||..+..
T Consensus 184 ~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~s 263 (1118)
T KOG1029|consen 184 LEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKS 263 (1118)
T ss_pred hhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCccCCCCCCCCCccccch
Q 016165 86 GHQVTHDLWNSDVDFQNLKPPAMEGLDK 113 (394)
Q Consensus 86 g~~~~~~l~~~~~~~~~~~lp~~~~l~~ 113 (394)
|.++|..||+ .+.+|+++++..
T Consensus 264 Gq~lP~tlP~------E~Vpp~~r~~rs 285 (1118)
T KOG1029|consen 264 GQPLPKTLPP------ELVPPSFRSSRS 285 (1118)
T ss_pred CCCCCCCCCh------hhcCcccccccC
Confidence 9999999997 999999988655
No 156
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.8e-20 Score=173.81 Aligned_cols=190 Identities=17% Similarity=0.213 Sum_probs=130.7
Q ss_pred eeeeeecCCc---CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---
Q 016165 176 EVTYRFNDFV---SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--- 247 (394)
Q Consensus 176 ~~~~~~~~~~---~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--- 247 (394)
++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 7 ~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--------p~~G~--i~~~g~~i~~~~~ 76 (280)
T PRK13649 7 NVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--------PTQGS--VRVDDTLITSTSK 76 (280)
T ss_pred EEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEEcccccc
Confidence 4566775421 3589999999887 999999999999999999999983 33333 2223322111
Q ss_pred -------cCCceeeeccC--CCCCcccccccccch-------hhhhhcCCccccccceee----c-CCCCCc-hhhhhhh
Q 016165 248 -------IPGNTVAVQAD--MPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQ 305 (394)
Q Consensus 248 -------~~~~~~~~~~~--~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~----D-t~g~ls-Ge~qrv~ 305 (394)
.....+.++.. ..+. .+...+..+. ..+..+.+.++++.+++. + .++.+| ||+||+.
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 11234444442 1222 2333333111 111223345566666664 2 567889 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL 379 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~ 379 (394)
+|++++.+|+++|+ .+|+.. ...+.++|+.+++.+.++|+++ |+.+.+..+ ++++++++
T Consensus 156 -------la~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiiivs-----H~~~~~~~~~d~i~~l~~ 220 (280)
T PRK13649 156 -------IAGILAMEPKILVLDEPTAGLDPKG---RKELMTLFKKLHQSGMTIVLVT-----HLMDDVANYADFVYVLEK 220 (280)
T ss_pred -------HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----ccHHHHHHhCCEEEEEEC
Confidence 99999999999999 888876 7788889988876678888888 888888776 99999999
Q ss_pred ceeeecCcccee
Q 016165 380 GKVLNTPEVVRV 391 (394)
Q Consensus 380 G~i~~~~~~~~v 391 (394)
|+++..++..++
T Consensus 221 G~i~~~g~~~~~ 232 (280)
T PRK13649 221 GKLVLSGKPKDI 232 (280)
T ss_pred CEEEEeCCHHHH
Confidence 999876665443
No 157
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7.9e-20 Score=186.67 Aligned_cols=188 Identities=13% Similarity=0.228 Sum_probs=133.7
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+++...
T Consensus 3 nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 3 NISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--------KDSGS--ILFQGKEIDFKSSKEA 70 (491)
T ss_pred ceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--------CCceE--EEECCEECCCCCHHHH
Confidence 34567776 5699999999887 999999999999999999999984 32333 2223322110
Q ss_pred -cCCceeeeccCCCCCcccccccccc----------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFL----------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
.....++++....+...+...+..+ ...+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~------ 144 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIE------ 144 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH------
Confidence 1123444444433333343333211 11122334566677776642 578899 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+|++++.+|+++|+ ++|+.. ...+.++++++.+.+.++|+++ |+.+++..+ ++++++++|+++..
T Consensus 145 -lA~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tvii~t-----H~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 145 -IAKAFSYNAKIVIMDEPTSSLTEKE---VNHLFTIIRKLKERGCGIVYIS-----HKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred -HHHHHHhCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----cCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999 888876 7888899999877788888888 888888776 99999999999877
Q ss_pred Cccce
Q 016165 386 PEVVR 390 (394)
Q Consensus 386 ~~~~~ 390 (394)
+++.+
T Consensus 216 ~~~~~ 220 (491)
T PRK10982 216 QPLAG 220 (491)
T ss_pred cChhh
Confidence 66544
No 158
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.80 E-value=9.3e-20 Score=170.83 Aligned_cols=191 Identities=17% Similarity=0.158 Sum_probs=130.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCc-----ccc
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVD-----DRS 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~-----~~~ 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+++ ...
T Consensus 10 ~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 10 RGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--------PDAGE--VHYRMRDGQLRDLYA 77 (258)
T ss_pred eeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCCE--EEECCcccccccccc
Confidence 455667766 5699999999887 999999999999999999999984 33333 2233332 111
Q ss_pred ----------cCCceeeeccCC--CCCccccccccc-----c---hhhhhhcCCccccccceee----c-CCCCCc-hhh
Q 016165 248 ----------IPGNTVAVQADM--PFSGLTTFGTAF-----L---SKFECSQMPHSLLEHITLV----D-TPGVLS-GEK 301 (394)
Q Consensus 248 ----------~~~~~~~~~~~~--~~~g~~~~~~~~-----~---~~~~~~~~~~~~l~~~~l~----D-t~g~ls-Ge~ 301 (394)
..+..++++... .+...+...+.. . ......+.+.++++.+++. + .+..+| ||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 112334444431 111222222210 0 0011233445666777663 2 578888 999
Q ss_pred hhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhH
Q 016165 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGA 374 (394)
Q Consensus 302 qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~ 374 (394)
||+. +||+++.+|+++|+ .+|+.. ...+.++++.+.++ +.++|+++ |+.+.+..+ +++
T Consensus 158 qrl~-------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~is-----H~~~~~~~~~d~i 222 (258)
T PRK11701 158 QRLQ-------IARNLVTHPRLVFMDEPTGGLDVSV---QARLLDLLRGLVRELGLAVVIVT-----HDLAVARLLAHRL 222 (258)
T ss_pred HHHH-------HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEe-----CCHHHHHHhcCEE
Confidence 9999 99999999999999 888766 77888888887654 77788888 888888775 999
Q ss_pred hhhccceeeecCccceee
Q 016165 375 LMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 375 ~~~~~G~i~~~~~~~~v~ 392 (394)
+++++|+++..++..+++
T Consensus 223 ~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 223 LVMKQGRVVESGLTDQVL 240 (258)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999877665543
No 159
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=6.6e-20 Score=167.56 Aligned_cols=158 Identities=23% Similarity=0.306 Sum_probs=129.3
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcc
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGL 264 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 264 (394)
.+++|+||++.. .++|||++|||||||-++|+|+. .|+.|. +.+.+++...+
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~--------~pt~G~--i~f~g~~i~~~---------------- 80 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE--------EPTSGE--ILFEGKDITKL---------------- 80 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc--------CCCCce--EEEcCcchhhc----------------
Confidence 689999999887 99999999999999999999999 555555 44344332111
Q ss_pred cccccccchhhhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCC
Q 016165 265 TTFGTAFLSKFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKL 333 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~ 333 (394)
...+..+++.++|+.+++.. .|..+| ||+||+. |||+++.+|+++++ ++|.+.
T Consensus 81 --------~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~-------IARALal~P~liV~DEpvSaLDvSi- 144 (268)
T COG4608 81 --------SKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIG-------IARALALNPKLIVADEPVSALDVSV- 144 (268)
T ss_pred --------chhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHH-------HHHHHhhCCcEEEecCchhhcchhH-
Confidence 12234455677777777643 799999 8999999 99999999999999 888876
Q ss_pred CchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceeec
Q 016165 334 DISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 334 ~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~~ 393 (394)
+.++..++..++++ +.+.++++ ||...+..+ |++.+|..|+++..+...++|.
T Consensus 145 --qaqIlnLL~dlq~~~~lt~lFIs-----HDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 145 --QAQILNLLKDLQEELGLTYLFIS-----HDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred --HHHHHHHHHHHHHHhCCeEEEEE-----EEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 99999999999875 88999999 888888887 9999999999999988877763
No 160
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.80 E-value=6.9e-20 Score=169.57 Aligned_cols=189 Identities=22% Similarity=0.299 Sum_probs=133.9
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IP 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~ 249 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... ..
T Consensus 5 ~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--------~~~G~--i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 5 NISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--------PDSGR--IRLNGQDATRVHARDR 72 (237)
T ss_pred EEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEEcCcCChhhc
Confidence 44567766 5699999998887 999999999999999999999883 33333 2223322211 12
Q ss_pred CceeeeccCCCCCcccccccccchh-------hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLSK-------FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
+..+..+....+.+.+..++..... ....+.+.++++.+++.+ .++.+| ||+||+. +|+++
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~-------laral 145 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVA-------LARAL 145 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH-------HHHHH
Confidence 3444555544454544444432111 112233456677777643 567888 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
+.+|+++|+ .+|+.. ...+.++++++..+ +.++++++ |+.+++.++ ++++.+++|+++..++..+
T Consensus 146 ~~~p~llllDEP~~~LD~~~---~~~~~~~l~~~~~~~~~tvli~s-----H~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKV---RKELRSWLRKLHDEVHVTTVFVT-----HDQEEAMEVADRIVVMSNGKIEQIGSPDE 217 (237)
T ss_pred hcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHhhcCEEEEEECCEEEEecCHHH
Confidence 999999999 888876 78888899888765 67888888 788887776 9999999999987766544
Q ss_pred e
Q 016165 391 V 391 (394)
Q Consensus 391 v 391 (394)
+
T Consensus 218 ~ 218 (237)
T TIGR00968 218 V 218 (237)
T ss_pred H
Confidence 3
No 161
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.1e-20 Score=173.59 Aligned_cols=191 Identities=22% Similarity=0.293 Sum_probs=134.1
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------- 246 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------- 246 (394)
++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+..
T Consensus 6 ~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--------~~~G~--i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 6 DLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--------PTSGE--VLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCccE--EEECCEECccccchHH
Confidence 456677531 4589999999887 999999999999999999999884 33333 223332211
Q ss_pred -ccCCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 247 -SIPGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 247 -~~~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
......+.++... .+...+..++..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~------- 147 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVA------- 147 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHH-------
Confidence 0112334444421 11112333333211 1122344566777777754 578889 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
+|++++.+|+++|+ ++|+.. ...+.+++.++.+.+.++++++ |+.+.+..+ ++++++++|+++..+
T Consensus 148 laral~~~p~llllDEPt~gLD~~~---~~~l~~~l~~l~~~~~til~vt-----H~~~~~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMG---ASQIMKLLYDLNKEGITIIIST-----HDVDLVPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----cCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999 888876 8888899998876678888888 888888775 999999999999877
Q ss_pred ccceee
Q 016165 387 EVVRVY 392 (394)
Q Consensus 387 ~~~~v~ 392 (394)
++.+++
T Consensus 220 ~~~~~~ 225 (275)
T PRK13639 220 TPKEVF 225 (275)
T ss_pred CHHHHh
Confidence 766543
No 162
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1e-19 Score=170.55 Aligned_cols=194 Identities=21% Similarity=0.299 Sum_probs=133.7
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
.++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| ..+.|..++ +.+.+++..
T Consensus 16 ~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~---~~~~~~~G~--i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 16 ENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL---IKNCRIEGK--VSIEGEDIYEPDVDV 88 (258)
T ss_pred eeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCCcceE--EEECCEEcccccchH
Confidence 455667765 5689999999887 9999999999999999999998731 000123333 333333211
Q ss_pred --ccCCceeeeccCCCCCcccccccccchh-------hhhhcCCccccccceee-------c-CCCCCc-hhhhhhhccc
Q 016165 247 --SIPGNTVAVQADMPFSGLTTFGTAFLSK-------FECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 247 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~~ 308 (394)
......++++....+. .+..++..+.. ....+.+.++++.+++. + .++.+| ||+||+.
T Consensus 89 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~--- 164 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC--- 164 (258)
T ss_pred HHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH---
Confidence 0123445555544444 44444442111 01122344566666542 2 567888 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++.+ +.++|+++ |+.+.+..+ ++++++++|++
T Consensus 165 ----laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~l~~-~~tiiivs-----H~~~~~~~~~d~i~~l~~G~i 231 (258)
T PRK14268 165 ----IARTLAVKPKIILFDEPTSALDPIS---TARIEDLIMNLKK-DYTIVIVT-----HNMQQAARISDYTGFFLMGEL 231 (258)
T ss_pred ----HHHHHHcCCCEEEEeCCCcccCHHH---HHHHHHHHHHHhh-CCEEEEEE-----CCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999 888876 7888899988864 67778887 888888776 99999999999
Q ss_pred eecCccceee
Q 016165 383 LNTPEVVRVY 392 (394)
Q Consensus 383 ~~~~~~~~v~ 392 (394)
+..+++.+++
T Consensus 232 ~~~~~~~~~~ 241 (258)
T PRK14268 232 IEFGQTRQIF 241 (258)
T ss_pred EEeCCHHHHh
Confidence 8877765543
No 163
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.6e-20 Score=171.87 Aligned_cols=196 Identities=22% Similarity=0.337 Sum_probs=134.6
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc--
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-- 247 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-- 247 (394)
+..-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| ....|..++ +.+.+++...
T Consensus 20 l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~~~~G~--I~~~g~~i~~~~ 92 (267)
T PRK14235 20 MRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDT---IDGCRVTGK--ITLDGEDIYDPR 92 (267)
T ss_pred EEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc---ccCCCCceE--EEECCEECcccc
Confidence 344566778876 5699999999887 9999999999999999999998731 000123343 3333332211
Q ss_pred ------cCCceeeeccCCCCCcccccccccch---------hhhhhcCCccccccceee-------c-CCCCCc-hhhhh
Q 016165 248 ------IPGNTVAVQADMPFSGLTTFGTAFLS---------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQR 303 (394)
Q Consensus 248 ------~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qr 303 (394)
.....++++....+.. +...+..+. .....+.+.++++.+++. + .++.+| ||+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 171 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR 171 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 1123445555443432 344433211 111223345566666663 2 567888 99999
Q ss_pred hhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhh
Q 016165 304 TQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMW 377 (394)
Q Consensus 304 v~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~ 377 (394)
+. +||+++.+|+++|+ ++|+.. ...+.++|+.+.+ +.++|+++ |+.+.+..+ ++++++
T Consensus 172 v~-------laral~~~p~lllLDEPt~~LD~~~---~~~l~~~L~~l~~-~~tiiivt-----H~~~~~~~~~d~v~~l 235 (267)
T PRK14235 172 LC-------IARAIAVSPEVILMDEPCSALDPIA---TAKVEELIDELRQ-NYTIVIVT-----HSMQQAARVSQRTAFF 235 (267)
T ss_pred HH-------HHHHHHcCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHhc-CCeEEEEE-----cCHHHHHhhCCEEEEE
Confidence 99 99999999999999 888876 7888899988865 56777777 888888776 899999
Q ss_pred ccceeeecCcccee
Q 016165 378 SLGKVLNTPEVVRV 391 (394)
Q Consensus 378 ~~G~i~~~~~~~~v 391 (394)
++|+++..++..++
T Consensus 236 ~~G~i~~~g~~~~~ 249 (267)
T PRK14235 236 HLGNLVEVGDTEKM 249 (267)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999887765543
No 164
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-19 Score=168.99 Aligned_cols=191 Identities=21% Similarity=0.270 Sum_probs=132.4
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
.++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| . .|..++ +.+.+++...
T Consensus 6 ~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~--~~~~G~--i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 6 TNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDK---I--AKIDGL--VEIEGKDVKNQDVVA 76 (246)
T ss_pred eeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---C--CCCceE--EEECCEecccCCHHH
Confidence 345667876 5699999999887 9999999999999999999998631 0 123333 3334433211
Q ss_pred -cCCceeeeccCCCCCcccccccccch---------hhhhhcCCccccccceee-------c-CCCCCc-hhhhhhhccc
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS---------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~~ 308 (394)
.....+.++....+. .+...+..+. .....+.+.++++.+++. + .+..+| ||+||+.
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~--- 152 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLC--- 152 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHH---
Confidence 113444555544443 2444443211 011222345666776662 2 467788 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ ++|+.. ...+.+++.++.. +.++++++ |+.+.+... ++++++++|++
T Consensus 153 ----laral~~~p~lllLDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~t-----H~~~~~~~~~d~i~~l~~G~i 219 (246)
T PRK14269 153 ----IARALAIKPKLLLLDEPTSALDPIS---SGVIEELLKELSH-NLSMIMVT-----HNMQQGKRVADYTAFFHLGEL 219 (246)
T ss_pred ----HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHhC-CCEEEEEe-----cCHHHHHhhCcEEEEEECCEE
Confidence 99999999999999 888766 7788888888864 77778887 888888776 99999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..+...++
T Consensus 220 ~~~g~~~~~ 228 (246)
T PRK14269 220 IEFGESKEF 228 (246)
T ss_pred EEECCHHHH
Confidence 977665544
No 165
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=7.3e-20 Score=173.69 Aligned_cols=192 Identities=21% Similarity=0.346 Sum_probs=134.1
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCccc---ceeEEEEecCcccc--
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT---DRFVVVMSGVDDRS-- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t---~r~~i~~~~~~~~~-- 247 (394)
.++++.|++....++++++|++.+ +++|+|+||||||||+++|+|... |.. +. +.+.+.+...
T Consensus 9 ~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~--------p~~g~~G~--i~i~g~~~~~~~ 78 (282)
T PRK13640 9 KHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL--------PDDNPNSK--ITVDGITLTAKT 78 (282)
T ss_pred EEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--------CCCCCCcE--EEECCEECCcCC
Confidence 355667754224589999999887 999999999999999999999984 221 22 3333332211
Q ss_pred ----cCCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 248 ----IPGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 ----~~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
.....++++... .+...+...+..+. ..+..+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 79 ~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~----- 153 (282)
T PRK13640 79 VWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVA----- 153 (282)
T ss_pred HHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHH-----
Confidence 113344454431 23333444443211 1122334566777777754 678889 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhccceeee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLN 384 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ ++|+.. ...+.++++.+.++ +.++++++ |+.+.+..+++++++++|+++.
T Consensus 154 --laral~~~P~llllDEPt~gLD~~~---~~~l~~~l~~l~~~~g~tvli~t-----H~~~~~~~~d~i~~l~~G~i~~ 223 (282)
T PRK13640 154 --IAGILAVEPKIIILDESTSMLDPAG---KEQILKLIRKLKKKNNLTVISIT-----HDIDEANMADQVLVLDDGKLLA 223 (282)
T ss_pred --HHHHHHcCCCEEEEECCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999 888876 78888999888764 78888888 6666665459999999999998
Q ss_pred cCcccee
Q 016165 385 TPEVVRV 391 (394)
Q Consensus 385 ~~~~~~v 391 (394)
.++..++
T Consensus 224 ~g~~~~~ 230 (282)
T PRK13640 224 QGSPVEI 230 (282)
T ss_pred eCCHHHH
Confidence 7766554
No 166
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.7e-19 Score=168.47 Aligned_cols=196 Identities=19% Similarity=0.311 Sum_probs=134.5
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
.-+++++|++ ..++++++|++.+ +++|+|+||||||||+++|+|...+ .+. .|..++ +.+.+.+...
T Consensus 7 ~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~--~~~~G~--v~~~g~~i~~~~~~ 79 (252)
T PRK14256 7 LEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDL-VPS--ARVTGK--ILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccC-CCC--CCCceE--EEECCEEcccccCC
Confidence 3456677875 5699999999887 9999999999999999999998730 000 012333 3333332211
Q ss_pred ----cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceee-------c-CCCCCc-hhhhhhhc
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQR 306 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~ 306 (394)
.....+.++....+...+...+.... ..+..+.+.++++.+++. + .++.+| ||+||+.
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~- 158 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLC- 158 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHH-
Confidence 12344555555545544444443110 111223345556566652 1 477888 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+|++++.+|+++|+ ++|+.. ...+.++++++.+ +.++|+++ |+.+.+.++ ++++++.+|
T Consensus 159 ------laral~~~p~llllDEP~~gLD~~~---~~~l~~~l~~~~~-~~tiiivs-----H~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14256 159 ------IARTIAVKPEVILMDEPASALDPIS---TLKIEELIEELKE-KYTIIIVT-----HNMQQAARVSDYTAFFYMG 223 (252)
T ss_pred ------HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHh-CCcEEEEE-----CCHHHHHhhCCEEEEEECC
Confidence 99999999999999 888876 7888899998875 46777777 888888776 999999999
Q ss_pred eeeecCccceee
Q 016165 381 KVLNTPEVVRVY 392 (394)
Q Consensus 381 ~i~~~~~~~~v~ 392 (394)
+++..++..+++
T Consensus 224 ~i~~~~~~~~~~ 235 (252)
T PRK14256 224 DLVECGETKKIF 235 (252)
T ss_pred EEEEeCCHHHHH
Confidence 998877665543
No 167
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=8.4e-20 Score=172.32 Aligned_cols=191 Identities=21% Similarity=0.338 Sum_probs=131.2
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++....++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 11 ~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------p~~G~--I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 11 ENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--------PQSGE--IKIDGITISKENLKE 80 (271)
T ss_pred EeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCce--EEECCEecCcCCHHH
Confidence 455667752224699999998877 999999999999999999999983 33333 2233322211
Q ss_pred -cCCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 -IPGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 -~~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
.....++++... .+.+.+...+..+. ..+..+.+.++++.+++.+ .+..+| ||+||+. +
T Consensus 81 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------l 153 (271)
T PRK13632 81 IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVA-------I 153 (271)
T ss_pred HhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHH-------H
Confidence 112344444431 23334444443211 1122334566777777743 578889 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~ 387 (394)
||+++.+|+++|+ .+|+.. ...+.++++++.++ +.++|+++ |+.+.+..+++++++++|+++..+.
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~---~~~l~~~l~~~~~~~~~tiii~s-----H~~~~~~~~d~v~~l~~G~i~~~g~ 225 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKG---KREIKKIMVDLRKTRKKTLISIT-----HDMDEAILADKVIVFSEGKLIAQGK 225 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEE-----echhHHhhCCEEEEEECCEEEEecC
Confidence 9999999999999 888876 78888999988765 47778888 6666665448999999999987665
Q ss_pred cce
Q 016165 388 VVR 390 (394)
Q Consensus 388 ~~~ 390 (394)
..+
T Consensus 226 ~~~ 228 (271)
T PRK13632 226 PKE 228 (271)
T ss_pred HHH
Confidence 544
No 168
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.6e-19 Score=168.50 Aligned_cols=193 Identities=20% Similarity=0.298 Sum_probs=131.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... .....|..++ +.+.+.+...
T Consensus 7 ~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~--i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 7 RDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND---LIPATRLEGE--IRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc---ccCCCCCceE--EEECCEecccccccH
Confidence 345667776 5689999998887 999999999999999999999631 0000112333 3334433211
Q ss_pred ---cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceee--------cCCCCCc-hhhhhhhcc
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLV--------DTPGVLS-GEKQRTQRA 307 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~--------Dt~g~ls-Ge~qrv~~~ 307 (394)
..+..+.++....+. .+...+..+. .....+.+.++++.+++. ..+..+| ||+||+.
T Consensus 80 ~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~-- 156 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC-- 156 (250)
T ss_pred HHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHH--
Confidence 123455555544443 2443433211 011223345566666552 2567788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+||+++.+|+++|+ ++|+.. ...+.++++++.+ +.++|+++ |+.+.+.+. ++++.+++|+
T Consensus 157 -----laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiiivt-----H~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 157 -----IARAMAVSPSVLLMDEPASALDPIS---TAKVEELIHELKK-DYTIVIVT-----HNMQQAARVSDKTAFFYMGE 222 (250)
T ss_pred -----HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEe-----CCHHHHHhhCCEEEEEECCE
Confidence 99999999999999 888876 7888899998854 67778877 888888776 9999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..+...++
T Consensus 223 ~~~~~~~~~~ 232 (250)
T PRK14245 223 MVEYDDTKKI 232 (250)
T ss_pred EEEECCHHHH
Confidence 9887766554
No 169
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.6e-19 Score=169.45 Aligned_cols=193 Identities=18% Similarity=0.283 Sum_probs=131.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| ....|..++ +.+.+++..
T Consensus 17 ~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~p~~p~~G~--i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 17 RNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL---YPEQRAEGE--ILLDGENILTPKQDI 89 (260)
T ss_pred EEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---CCCCCcceE--EEECCEEccccccch
Confidence 456677876 5699999999887 9999999999999999999998731 000123333 233332221
Q ss_pred --ccCCceeeeccCCCCCcccccccccch--------hhhhhcCCcccccccee-------ec-CCCCCc-hhhhhhhcc
Q 016165 247 --SIPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 247 --~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv~~~ 307 (394)
......+.++....+. .+...+..+. .....+.+.++++.+++ .+ .++.+| ||+||+.
T Consensus 90 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~-- 166 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC-- 166 (260)
T ss_pred HHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH--
Confidence 0123444555544333 3433333111 01122344556666664 22 578889 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+|++++.+|+++|+ .+|... ...+.++++++++ +.++|+++ |+.+.+..+ ++++++++|+
T Consensus 167 -----laral~~~p~lllLDEPt~~LD~~~---~~~l~~~L~~~~~-~~tiii~s-----H~~~~~~~~~d~i~~l~~G~ 232 (260)
T PRK10744 167 -----IARGIAIRPEVLLLDEPCSALDPIS---TGRIEELITELKQ-DYTVVIVT-----HNMQQAARCSDYTAFMYLGE 232 (260)
T ss_pred -----HHHHHHCCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEe-----CCHHHHHHhCCEEEEEECCE
Confidence 99999999999999 888876 7788889988864 56777777 888888776 9999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..++..++
T Consensus 233 i~~~g~~~~~ 242 (260)
T PRK10744 233 LIEFGNTDTI 242 (260)
T ss_pred EEEeCCHHHH
Confidence 9887765544
No 170
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.6e-19 Score=174.51 Aligned_cols=197 Identities=18% Similarity=0.285 Sum_probs=137.4
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR----- 246 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~----- 246 (394)
.-++++.|.+....++++++|++.+ +++|+|+||||||||+++|+|... ...+.|..+. +.+++.+..
T Consensus 83 ~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~---~~~~~p~~G~--I~idG~~i~~~~~~ 157 (329)
T PRK14257 83 IRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLND---LIEGTSHEGE--IYFLGTNTRSKKIS 157 (329)
T ss_pred EEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---ccCCCCCceE--EEECCEEccccccc
Confidence 3455667753224689999999988 999999999999999999999873 2222234444 444444432
Q ss_pred ---ccCCceeeeccCCCCCcccccccccchh-h------h-hhcCCcccccccee--------ecCCCCCc-hhhhhhhc
Q 016165 247 ---SIPGNTVAVQADMPFSGLTTFGTAFLSK-F------E-CSQMPHSLLEHITL--------VDTPGVLS-GEKQRTQR 306 (394)
Q Consensus 247 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~------~-~~~~~~~~l~~~~l--------~Dt~g~ls-Ge~qrv~~ 306 (394)
......++++....+.+ +...|..+.. . + ..+.+..+++.+++ ...+..+| ||+||+.
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~- 235 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEM-SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC- 235 (329)
T ss_pred hHhhhccEEEEecCCccCCC-cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH-
Confidence 12245566676665543 4444442211 0 0 01112334444443 23567788 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+||+++.+|+++|+ .+|+.. ...+.+.|+.+.+ +.++|+++ |+.+.+.++ |+++++++|
T Consensus 236 ------LARAl~~~p~IlLLDEPts~LD~~~---~~~i~~~i~~l~~-~~Tii~iT-----H~l~~i~~~~Driivl~~G 300 (329)
T PRK14257 236 ------IARAIALEPEVLLMDEPTSALDPIA---TAKIEELILELKK-KYSIIIVT-----HSMAQAQRISDETVFFYQG 300 (329)
T ss_pred ------HHHHHHhCCCEEEEeCCcccCCHHH---HHHHHHHHHHHhc-CCEEEEEe-----CCHHHHHHhCCEEEEEECC
Confidence 99999999999999 788765 6778888888865 57888888 888888885 999999999
Q ss_pred eeeecCccceee
Q 016165 381 KVLNTPEVVRVY 392 (394)
Q Consensus 381 ~i~~~~~~~~v~ 392 (394)
+++..|++.+++
T Consensus 301 ~i~e~g~~~~l~ 312 (329)
T PRK14257 301 WIEEAGETKTIF 312 (329)
T ss_pred EEEEeCCHHHHh
Confidence 999998887765
No 171
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.5e-19 Score=168.65 Aligned_cols=192 Identities=18% Similarity=0.283 Sum_probs=131.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...+ ....|..+. +.+.+.+...
T Consensus 10 ~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~---~~~~~~~G~--i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 10 NLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDF---VPNCKVKGE--LDIDGIDVYSVDTNVV 82 (251)
T ss_pred eEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc---CCCCCcceE--EEECCEehHhcccchH
Confidence 44557765 5689999999887 9999999999999999999998731 000022333 3333332211
Q ss_pred --cCCceeeeccCCCCCcccccccccchh---------hhhhcCCccccccceeec--------CCCCCc-hhhhhhhcc
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLSK---------FECSQMPHSLLEHITLVD--------TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~D--------t~g~ls-Ge~qrv~~~ 307 (394)
.....++++....+.+ +...+..+.. ....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 83 ~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~-- 159 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLC-- 159 (251)
T ss_pred HHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHH--
Confidence 1234455555444443 3344332110 111223445666666632 467788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+||+++.+|+++|+ ++|+.. ...+.++|+.+.+ +.++++++ |+.+.+..+ ++++++++|+
T Consensus 160 -----laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiiiis-----H~~~~~~~~~d~i~~l~~G~ 225 (251)
T PRK14244 160 -----IARAIAVKPTMLLMDEPCSALDPVA---TNVIENLIQELKK-NFTIIVVT-----HSMKQAKKVSDRVAFFQSGR 225 (251)
T ss_pred -----HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEe-----CCHHHHHhhcCEEEEEECCE
Confidence 99999999999999 888876 7788888988854 67788888 888888776 9999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..++..++
T Consensus 226 i~~~~~~~~~ 235 (251)
T PRK14244 226 IVEYNTTQEI 235 (251)
T ss_pred EEEeCCHHHH
Confidence 9877665443
No 172
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.79 E-value=1.4e-19 Score=170.55 Aligned_cols=195 Identities=19% Similarity=0.205 Sum_probs=130.8
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCc--ccceeEEEEecCccccc---
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP--TTDRFVVVMSGVDDRSI--- 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p--~t~r~~i~~~~~~~~~~--- 248 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| ..+... ..++ +.+.+.+....
T Consensus 6 nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p--~~~~~~~~~~G~--i~~~g~~~~~~~~~ 79 (272)
T PRK13547 6 HLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTG--GGAPRGARVTGD--VTLNGEPLAAIDAP 79 (272)
T ss_pred EEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--cccccccCCceE--EEECCEEcccCCHH
Confidence 45667776 5699999998887 9999999999999999999998842 100000 0222 33344322111
Q ss_pred ---CCceeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccC
Q 016165 249 ---PGNTVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 249 ---~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~ 309 (394)
....++++....+...+...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~---- 155 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQ---- 155 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH----
Confidence 1123334433222223333332110 0112233456666776643 578889 9999999
Q ss_pred hHHHHHHHh---------hcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-Hh
Q 016165 310 FTGVTSWFA---------AKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YG 373 (394)
Q Consensus 310 ~~~iaral~---------~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~ 373 (394)
+|++++ .+|+++|+ .+|+.. ...+.++++++.+. +.++++++ |+.+.+..+ ++
T Consensus 156 ---laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tviiis-----H~~~~~~~~~d~ 224 (272)
T PRK13547 156 ---FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH---QHRLLDTVRRLARDWNLGVLAIV-----HDPNLAARHADR 224 (272)
T ss_pred ---HHHHHhccccccccCCCCCEEEEcCccccCCHHH---HHHHHHHHHHHHHhcCCEEEEEE-----CCHHHHHHhCCE
Confidence 999999 49999999 888876 88888999988765 78888888 888888776 99
Q ss_pred HhhhccceeeecCcccee
Q 016165 374 ALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 374 ~~~~~~G~i~~~~~~~~v 391 (394)
++++++|+++..+...++
T Consensus 225 i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 225 IAMLADGAIVAHGAPADV 242 (272)
T ss_pred EEEEECCeEEEecCHHHH
Confidence 999999999877665443
No 173
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.4e-19 Score=167.42 Aligned_cols=194 Identities=20% Similarity=0.313 Sum_probs=130.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|...|. + .....++ +.+.+.+...
T Consensus 8 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~--~~~~~G~--i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 8 QDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLT-P--GARVTGR--ILLDGQDIYGPRVDP 80 (252)
T ss_pred eeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-c--CCCCcee--EEECCEEcccCccCH
Confidence 355667765 5699999999887 99999999999999999999987420 0 0001232 3333332211
Q ss_pred ---cCCceeeeccCCCCCcccccccccchh--------hhhhcCCcccccccee-------ec-CCCCCc-hhhhhhhcc
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv~~~ 307 (394)
..+..+..+....+.+.+...+..... .+..+.+.++++.+++ .+ .++.+| ||+||+.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~-- 158 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLC-- 158 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHH--
Confidence 123445566655555545444432110 0112222333333332 12 567889 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++++ +.++++++ |+.+.+..+ ++++++++|+
T Consensus 159 -----laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~s-----H~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14272 159 -----IARALAVEPEILLMDEPTSALDPAS---TARIEDLMTDLKK-VTTIIIVT-----HNMHQAARVSDTTSFFLVGD 224 (252)
T ss_pred -----HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEe-----CCHHHHHHhCCEEEEEECCE
Confidence 99999999999999 888876 7888899988864 57777777 888888876 9999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..++..++
T Consensus 225 i~~~~~~~~~ 234 (252)
T PRK14272 225 LVEHGPTDQL 234 (252)
T ss_pred EEEeCCHHHH
Confidence 9877665543
No 174
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.2e-19 Score=169.77 Aligned_cols=195 Identities=20% Similarity=0.305 Sum_probs=133.2
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--- 247 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--- 247 (394)
.--++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... +.++.|..++ +.+.+.+...
T Consensus 23 ~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~--i~~~g~~i~~~~~ 95 (276)
T PRK14271 23 AAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGD--VLLGGRSIFNYRD 95 (276)
T ss_pred EEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceE--EEECCEEccccch
Confidence 34456678876 5699999999887 999999999999999999999883 2222234444 3333322211
Q ss_pred ----cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec--------CCCCCc-hhhhhhhc
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD--------TPGVLS-GEKQRTQR 306 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D--------t~g~ls-Ge~qrv~~ 306 (394)
.....++++....+. .+...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 96 ~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~- 173 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC- 173 (276)
T ss_pred hHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH-
Confidence 123445555544343 3444433111 0111222334455555531 467788 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+||+++.+|+++|+ .+|+.. ...+.++|+++.+ ..++|+++ |+.+++..+ ++++++.+|
T Consensus 174 ------LAral~~~p~lllLDEPt~~LD~~~---~~~l~~~L~~~~~-~~tiiivs-----H~~~~~~~~~dri~~l~~G 238 (276)
T PRK14271 174 ------LARTLAVNPEVLLLDEPTSALDPTT---TEKIEEFIRSLAD-RLTVIIVT-----HNLAQAARISDRAALFFDG 238 (276)
T ss_pred ------HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHhc-CCEEEEEe-----CCHHHHHHhCCEEEEEECC
Confidence 99999999999999 788766 7778888888865 46777777 888888776 999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..++..++
T Consensus 239 ~i~~~g~~~~~ 249 (276)
T PRK14271 239 RLVEEGPTEQL 249 (276)
T ss_pred EEEEeCCHHHH
Confidence 99877665544
No 175
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.3e-19 Score=167.53 Aligned_cols=194 Identities=20% Similarity=0.304 Sum_probs=132.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|...| ....|..+. +.+.+.+...
T Consensus 8 ~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~~~~~~G~--i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 8 KNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDL---ISNVKIEGE--VLLDGKNIYDKDVDV 80 (251)
T ss_pred EEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc---ccCCCCccE--EEECCEecccccccH
Confidence 455667765 5699999999887 9999999999999999999998731 000112333 3333332211
Q ss_pred ---cCCceeeeccCCCCCcccccccccchh--------hhhhcCCccccccceee-------c-CCCCCc-hhhhhhhcc
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~ 307 (394)
.....+.++....+. .+...+..+.. ....+.+.++++.+++. + .++.+| ||+||+.
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~-- 157 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC-- 157 (251)
T ss_pred HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH--
Confidence 123455555554443 44444432111 11122344556666542 2 567888 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+|++++.+|+++|+ ++|+.. ...+.++|+++.+ +.++++++ |+.+.+.+. ++++++++|+
T Consensus 158 -----laral~~~p~llllDEP~~~LD~~~---~~~l~~~L~~~~~-~~tiiivs-----H~~~~~~~~~d~v~~l~~G~ 223 (251)
T PRK14270 158 -----IARTIAVKPDVILMDEPTSALDPIS---TLKIEDLMVELKK-EYTIVIVT-----HNMQQASRVSDYTAFFLMGD 223 (251)
T ss_pred -----HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHh-CCeEEEEE-----cCHHHHHHhcCEEEEEECCe
Confidence 99999999999999 888876 7888889988866 46777777 888888776 9999999999
Q ss_pred eeecCccceee
Q 016165 382 VLNTPEVVRVY 392 (394)
Q Consensus 382 i~~~~~~~~v~ 392 (394)
++..++..+++
T Consensus 224 i~~~~~~~~~~ 234 (251)
T PRK14270 224 LIEFNKTEKIF 234 (251)
T ss_pred EEEeCCHHHHh
Confidence 98877665543
No 176
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.8e-19 Score=166.80 Aligned_cols=193 Identities=20% Similarity=0.304 Sum_probs=129.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...+ .+ ..|..++ +.+.+.+...
T Consensus 7 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~--~~~~~G~--i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 7 KDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDL-IP--SVKIEGE--VLLDGQDIYKSDIDV 79 (250)
T ss_pred EEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-cC--CCCCceE--EEECCEEccccccch
Confidence 456667776 5699999999887 9999999999999999999997631 00 0112333 3333332211
Q ss_pred ---cCCceeeeccCCCCCcccccccccchh--------hhhhcCCcccccccee-------ec-CCCCCc-hhhhhhhcc
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv~~~ 307 (394)
.....++++....+. .+...+..+.. ....+.+.++++.+++ .+ .++.+| ||+||+.
T Consensus 80 ~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~-- 156 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLC-- 156 (250)
T ss_pred HHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHH--
Confidence 112344555544343 34444432111 1122333444445543 23 567889 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++.+ +.++++++ |+.+.+... ++++++++|+
T Consensus 157 -----laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~s-----H~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14240 157 -----IARALAVEPEVLLMDEPTSALDPIS---TLKIEELIQELKK-DYTIVIVT-----HNMQQASRISDKTAFFLNGE 222 (250)
T ss_pred -----HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEE-----eCHHHHHhhCCEEEEEECCE
Confidence 99999999999999 888876 7778888888854 67777777 777777776 9999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..+...++
T Consensus 223 i~~~~~~~~~ 232 (250)
T PRK14240 223 IVEFGDTVDL 232 (250)
T ss_pred EEEeCCHHHH
Confidence 9877665443
No 177
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.2e-19 Score=168.52 Aligned_cols=197 Identities=19% Similarity=0.251 Sum_probs=135.2
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc----
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---- 246 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---- 246 (394)
..-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| .+..+..+. +.+.+++..
T Consensus 9 ~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~g~i~~~G~--i~~~g~~i~~~~~ 81 (261)
T PRK14258 9 KVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL---ESEVRVEGR--VEFFNQNIYERRV 81 (261)
T ss_pred EEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC---CCCccccce--EEECCEEhhcccc
Confidence 33456667765 4689999999887 9999999999999999999999842 122222333 333443221
Q ss_pred ---c-cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceee-------c-CCCCCc-hhhhhhh
Q 016165 247 ---S-IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQ 305 (394)
Q Consensus 247 ---~-~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~ 305 (394)
. .....+.++....+. .+..++..+. ..+..+.+.++++.+++. + .++.+| ||+||+.
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 160 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLC 160 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 0 112344445443343 3444433211 111223345556666542 2 567888 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWS 378 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~ 378 (394)
+||+++.+|+++|+ .+|+.. ...+.++++.++. .+.++|+++ |+.+.+.++ +++++++
T Consensus 161 -------laral~~~p~vllLDEP~~~LD~~~---~~~l~~~l~~l~~~~~~tiiivs-----H~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 161 -------IARALAVKPKVLLMDEPCFGLDPIA---SMKVESLIQSLRLRSELTMVIVS-----HNLHQVSRLSDFTAFFK 225 (261)
T ss_pred -------HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHHhCCCEEEEEE-----CCHHHHHHhcCEEEEEc
Confidence 99999999999999 788876 7788888888764 477778877 888888877 9999999
Q ss_pred c-----ceeeecCccceee
Q 016165 379 L-----GKVLNTPEVVRVY 392 (394)
Q Consensus 379 ~-----G~i~~~~~~~~v~ 392 (394)
+ |+++..+++.+++
T Consensus 226 ~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 226 GNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred cCCCcCceEEEeCCHHHHH
Confidence 9 9999887776654
No 178
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.4e-19 Score=171.36 Aligned_cols=193 Identities=19% Similarity=0.269 Sum_probs=133.7
Q ss_pred ceeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 175 LEVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 175 l~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
-++++.|++. ...++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+++...
T Consensus 8 ~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~i~~~~~~ 77 (277)
T PRK13642 8 ENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--------EFEGK--VKIDGELLTAENVW 77 (277)
T ss_pred EEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--------CCCCE--EEECCEECCcCCHH
Confidence 3556677632 12489999999887 999999999999999999999993 33343 2233322211
Q ss_pred --cCCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 248 --IPGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 248 --~~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
.....++++... .+...+...+..+. ..+..+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~------- 150 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVA------- 150 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH-------
Confidence 123444555431 23333444443211 1112233456666666644 578889 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecC
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTP 386 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~ 386 (394)
+||+++.+|+++|+ .+|+.. ...+.+++.++.++ +.++++++ |+.+.+..+++++++++|+++..+
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~---~~~l~~~l~~l~~~~g~tiil~s-----H~~~~~~~~d~i~~l~~G~i~~~g 222 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTG---RQEIMRVIHEIKEKYQLTVLSIT-----HDLDEAASSDRILVMKAGEIIKEA 222 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999 888876 78888999888764 78888888 777777645999999999998877
Q ss_pred ccceee
Q 016165 387 EVVRVY 392 (394)
Q Consensus 387 ~~~~v~ 392 (394)
+..+++
T Consensus 223 ~~~~~~ 228 (277)
T PRK13642 223 APSELF 228 (277)
T ss_pred CHHHHh
Confidence 765543
No 179
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.5e-19 Score=168.81 Aligned_cols=196 Identities=19% Similarity=0.310 Sum_probs=130.9
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc---
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--- 246 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--- 246 (394)
+..-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... .....|..++ +.+.+++..
T Consensus 22 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~--i~~~g~~i~~~~ 94 (268)
T PRK14248 22 LEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMND---LIPSARSEGE--ILYEGLNILDSN 94 (268)
T ss_pred EEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhccc---ccCCCCCceE--EEECCEEccccc
Confidence 334466778876 5699999999887 999999999999999999999752 0000123333 333333221
Q ss_pred -----ccCCceeeeccCCCCCcccccccccch-h-------hhhhcCCcccccccee-------ec-CCCCCc-hhhhhh
Q 016165 247 -----SIPGNTVAVQADMPFSGLTTFGTAFLS-K-------FECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRT 304 (394)
Q Consensus 247 -----~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-------~~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv 304 (394)
...+..+.++....+.+ +...+..+. . ....+.+.++++.+++ .+ .++.+| ||+||+
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 01234555555444433 333333111 0 0111223334444443 12 578889 999999
Q ss_pred hcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS 378 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~ 378 (394)
. +||+++.+|+++|+ ++|+.. ...+.++++.+.+ +.++|+++ |+.+.+..+ +++++++
T Consensus 174 ~-------laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiii~t-----H~~~~~~~~~d~v~~l~ 237 (268)
T PRK14248 174 C-------IARTLAMKPAVLLLDEPASALDPIS---NAKIEELITELKE-EYSIIIVT-----HNMQQALRVSDRTAFFL 237 (268)
T ss_pred H-------HHHHHhCCCCEEEEcCCCcccCHHH---HHHHHHHHHHHhc-CCEEEEEE-----eCHHHHHHhCCEEEEEE
Confidence 9 99999999999999 888876 7888899988865 56777777 888887776 9999999
Q ss_pred cceeeecCcccee
Q 016165 379 LGKVLNTPEVVRV 391 (394)
Q Consensus 379 ~G~i~~~~~~~~v 391 (394)
+|+++..+...++
T Consensus 238 ~G~i~~~~~~~~~ 250 (268)
T PRK14248 238 NGDLVEYDQTEQI 250 (268)
T ss_pred CCEEEEeCCHHHH
Confidence 9999887765443
No 180
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.9e-19 Score=167.85 Aligned_cols=191 Identities=19% Similarity=0.230 Sum_probs=124.4
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-c--
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-I-- 248 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-~-- 248 (394)
.-++++.|++. +.++++++|++.+ +++|+|+||||||||+++|+|...| ..++ +.+.+.+... .
T Consensus 9 ~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--------~~G~--i~~~g~~i~~~~~~ 77 (272)
T PRK15056 9 VNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--------ASGK--ISILGQPTRQALQK 77 (272)
T ss_pred EEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--------CceE--EEECCEEhHHhhcc
Confidence 34556677421 4689999999877 9999999999999999999999842 2222 1122211100 0
Q ss_pred CCceeeeccCCC-C-Cccccccccc-----------chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 249 PGNTVAVQADMP-F-SGLTTFGTAF-----------LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 249 ~~~~~~~~~~~~-~-~g~~~~~~~~-----------~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
....+.++.... + .......+.. .......+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~----- 152 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVF----- 152 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH-----
Confidence 012222222110 0 0000011100 001112233445666666643 678899 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ .+|+.. ...+.++|+.+++++.++|+++ |+.+.+... ++++++ +|+++.
T Consensus 153 --laraL~~~p~llllDEPt~~LD~~~---~~~l~~~L~~~~~~g~tviivs-----H~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 153 --LARAIAQQGQVILLDEPFTGVDVKT---EARIISLLRELRDEGKTMLVST-----HNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred --HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEE-CCEEEe
Confidence 99999999999999 888876 7888899998877678888888 778787776 777666 899987
Q ss_pred cCcccee
Q 016165 385 TPEVVRV 391 (394)
Q Consensus 385 ~~~~~~v 391 (394)
.++..++
T Consensus 222 ~g~~~~~ 228 (272)
T PRK15056 222 SGPTETT 228 (272)
T ss_pred ecCHHhc
Confidence 7766554
No 181
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.79 E-value=2.1e-19 Score=169.20 Aligned_cols=181 Identities=15% Similarity=0.161 Sum_probs=124.9
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------cCCceeeecc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------IPGNTVAVQA 257 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------~~~~~~~~~~ 257 (394)
..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .....++++.
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~~~~i~~v~q~ 95 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--------PTSGE--LLIDDHPLHFGDYSYRSQRIRMIFQD 95 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--------CCCCE--EEECCEECCCCchhhHhccEEEEecC
Confidence 3589999999887 999999999999999999999983 33333 2223222110 0123344443
Q ss_pred CC--CCCccccccccc--------chhhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHHhhcC
Q 016165 258 DM--PFSGLTTFGTAF--------LSKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (394)
Q Consensus 258 ~~--~~~g~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~ 321 (394)
.. .+...+...+.. +......+.+.++++.+++. + .+..+| ||+||+. +|++++.+|
T Consensus 96 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~-------laral~~~p 168 (267)
T PRK15112 96 PSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG-------LARALILRP 168 (267)
T ss_pred chhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH-------HHHHHHhCC
Confidence 21 112222211110 01112233456677777773 2 568889 9999999 999999999
Q ss_pred CEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 322 DLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 322 dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
+++|+ .+|+.. ...+.++|.++.++ +.++|+++ |+.+.+..+ ++++++++|+++..+...++
T Consensus 169 ~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tviivs-----H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 169 KVIIADEALASLDMSM---RSQLINLMLELQEKQGISYIYVT-----QHLGMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred CEEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCcEEEEEe-----CCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999 888866 77888889888764 77788887 888888876 99999999999877665443
No 182
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.1e-19 Score=172.33 Aligned_cols=192 Identities=19% Similarity=0.304 Sum_probs=132.1
Q ss_pred ceeeeeecCC----cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-
Q 016165 175 LEVTYRFNDF----VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS- 247 (394)
Q Consensus 175 l~~~~~~~~~----~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~- 247 (394)
.++++.|++. .+.++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 8 ~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~i~g~~i~~~ 77 (280)
T PRK13633 8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--------PSEGK--VYVDGLDTSDE 77 (280)
T ss_pred eeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEecccc
Confidence 3556677531 13599999999887 999999999999999999999984 33333 2223322111
Q ss_pred ------cCCceeeeccCC-CCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhccc
Q 016165 248 ------IPGNTVAVQADM-PFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 ------~~~~~~~~~~~~-~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~ 308 (394)
.....++++... .+.+.+...+..+ ...+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~--- 154 (280)
T PRK13633 78 ENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVA--- 154 (280)
T ss_pred ccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH---
Confidence 112333444321 1112222222211 11122344566777777744 678899 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+|++++.+|+++|+ ++|+.. ...+.++++++.++ +.++++++ |+.+.+..+++++++++|++
T Consensus 155 ----laral~~~p~llllDEPt~gLD~~~---~~~l~~~l~~l~~~~g~tillvt-----H~~~~~~~~d~v~~l~~G~i 222 (280)
T PRK13633 155 ----IAGILAMRPECIIFDEPTAMLDPSG---RREVVNTIKELNKKYGITIILIT-----HYMEEAVEADRIIVMDSGKV 222 (280)
T ss_pred ----HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cChHHHhcCCEEEEEECCEE
Confidence 99999999999999 888876 88888999988654 78888888 77777665699999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..+++.++
T Consensus 223 ~~~g~~~~~ 231 (280)
T PRK13633 223 VMEGTPKEI 231 (280)
T ss_pred EEecCHHHH
Confidence 887766554
No 183
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.5e-19 Score=167.96 Aligned_cols=196 Identities=19% Similarity=0.291 Sum_probs=133.9
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc----
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---- 246 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---- 246 (394)
+--++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| .. ..|..++ +.+.+.+..
T Consensus 6 ~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~--~~-~~~~~G~--I~~~g~~~~~~~~ 78 (258)
T PRK14241 6 DVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV--IP-GARVEGE--VLLDGEDLYGPGV 78 (258)
T ss_pred EEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc--cc-CCCcceE--EEECCEecccccc
Confidence 33456677876 5699999999887 9999999999999999999998741 00 0123443 333443221
Q ss_pred ----ccCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceee-------c-CCCCCc-hhhhhhh
Q 016165 247 ----SIPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQ 305 (394)
Q Consensus 247 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~ 305 (394)
......+.++....+...+...+..+. .....+.+.++++.+++. + .++.+| ||+||+.
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC 158 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 012344555554444444555443211 111223345566666552 2 567889 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc-
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS- 378 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~- 378 (394)
+||+++.+|+++|+ ++|+.. ...+.++++++++ +.++|+++ |+.+.+.+. ++++++.
T Consensus 159 -------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tviivs-----H~~~~~~~~~d~i~~l~~ 222 (258)
T PRK14241 159 -------IARAIAVEPDVLLMDEPCSALDPIS---TLAIEDLINELKQ-DYTIVIVT-----HNMQQAARVSDQTAFFNL 222 (258)
T ss_pred -------HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CCEEEEEe-----cCHHHHHHhCCEEEEEec
Confidence 99999999999999 888876 7788899988864 56777777 888888776 8988886
Q ss_pred -----cceeeecCcccee
Q 016165 379 -----LGKVLNTPEVVRV 391 (394)
Q Consensus 379 -----~G~i~~~~~~~~v 391 (394)
+|+++..+...++
T Consensus 223 ~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 223 EATGKPGRLVEIDDTEKI 240 (258)
T ss_pred ccCCCCceEEecCCHHHH
Confidence 7999887765544
No 184
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.4e-19 Score=183.48 Aligned_cols=185 Identities=19% Similarity=0.272 Sum_probs=133.3
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+++...
T Consensus 8 ~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------p~~G~--I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 8 DGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--------PDAGS--ILIDGQEMRFASTTA 75 (501)
T ss_pred eeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCCE--EEECCEECCCCCHHH
Confidence 355667876 5699999999887 999999999999999999999984 33333 2222222110
Q ss_pred --cCCceeeeccCCCCCcccccccccch----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLS----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
..+..++++....+.+.+...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~----- 150 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVE----- 150 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHH-----
Confidence 11344455544444444444333211 1122334566777777743 578899 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.+++.++|+++ |+.+++..+ ++++++++|+++.
T Consensus 151 --laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~g~tiiiit-----Hd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 151 --IAKALARNARVIAFDEPTSSLSARE---IEQLFRVIRELRAEGRVILYVS-----HRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred --HHHHHHhCCCEEEEcCCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999 888876 7888899998877788888888 888888776 9999999999975
Q ss_pred cC
Q 016165 385 TP 386 (394)
Q Consensus 385 ~~ 386 (394)
.+
T Consensus 221 ~~ 222 (501)
T PRK11288 221 TF 222 (501)
T ss_pred ec
Confidence 43
No 185
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.79 E-value=3.3e-19 Score=166.65 Aligned_cols=190 Identities=15% Similarity=0.142 Sum_probs=129.7
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCc-----ccc
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVD-----DRS 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~-----~~~ 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |.++. +.+.+.+ ...
T Consensus 7 ~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 7 SGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--------PDHGT--ATYIMRSGAELELYQ 74 (253)
T ss_pred eeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEEeccccccccccc
Confidence 455667766 4689999999887 999999999999999999999983 33333 2233322 110
Q ss_pred c----------CCceeeeccCC--CCCccccccccc-----c---hhhhhhcCCccccccceeec-----CCCCCc-hhh
Q 016165 248 I----------PGNTVAVQADM--PFSGLTTFGTAF-----L---SKFECSQMPHSLLEHITLVD-----TPGVLS-GEK 301 (394)
Q Consensus 248 ~----------~~~~~~~~~~~--~~~g~~~~~~~~-----~---~~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~ 301 (394)
. .+..+..+... .....+...+.. . ......+.+.++++.+++.+ .+..+| ||+
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 0 12344444431 111112111210 0 00112234556677777642 567788 999
Q ss_pred hhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhH
Q 016165 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGA 374 (394)
Q Consensus 302 qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~ 374 (394)
||+. +||+++.+|+++|+ .+|+.. ...+.++++++.+ .+.++|+++ |+.+.+..+ +++
T Consensus 155 qrv~-------laral~~~p~vlllDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tii~vs-----H~~~~~~~~~d~~ 219 (253)
T TIGR02323 155 QRLQ-------IARNLVTRPRLVFMDEPTGGLDVSV---QARLLDLLRGLVRDLGLAVIIVT-----HDLGVARLLAQRL 219 (253)
T ss_pred HHHH-------HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhcCEE
Confidence 9999 99999999999999 788776 7788888888765 377888888 888888775 999
Q ss_pred hhhccceeeecCcccee
Q 016165 375 LMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 375 ~~~~~G~i~~~~~~~~v 391 (394)
+.+++|+++..++..++
T Consensus 220 ~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 220 LVMQQGRVVESGLTDQV 236 (253)
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999887665443
No 186
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.5e-19 Score=166.26 Aligned_cols=193 Identities=18% Similarity=0.261 Sum_probs=130.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| .+..+..++ +.+.+.+...
T Consensus 8 ~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~~~~G~--v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 8 RGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDI---VSGARLEGA--VLLDNENIYSPNLDV 80 (251)
T ss_pred EEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCc---cccCCcccE--EEECCEEccccccCh
Confidence 355667765 5699999999887 9999999999999999999999842 211122233 3333322110
Q ss_pred ---cCCceeeeccCCCCCcccccccccchh--------hhhhcCCcccccccee--------ecCCCCCc-hhhhhhhcc
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITL--------VDTPGVLS-GEKQRTQRA 307 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l--------~Dt~g~ls-Ge~qrv~~~ 307 (394)
.....++++....+.. +..++..+.. ....+.+.++++.+++ ...++.+| ||+||+.
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~-- 157 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLC-- 157 (251)
T ss_pred HHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHH--
Confidence 1234445555444433 4433332110 0111222333344443 23678889 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+||+++.+|+++|+ .+|+.. ...+.++++.+. ++.++++++ |+.+.+.++ ++++++++|+
T Consensus 158 -----laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~-~~~tilivs-----h~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14249 158 -----IARVLAIEPEVILMDEPCSALDPVS---TMRIEELMQELK-QNYTIAIVT-----HNMQQAARASDWTGFLLTGD 223 (251)
T ss_pred -----HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHh-cCCEEEEEe-----CCHHHHHhhCCEEEEEeCCe
Confidence 99999999999999 888876 777888888885 467788888 888888887 9999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..++..++
T Consensus 224 i~~~~~~~~~ 233 (251)
T PRK14249 224 LVEYGRTGEI 233 (251)
T ss_pred EEEeCCHHHH
Confidence 9877665543
No 187
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.79 E-value=4.1e-19 Score=163.16 Aligned_cols=190 Identities=16% Similarity=0.265 Sum_probs=128.9
Q ss_pred ceeeeeecCC--cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc---c
Q 016165 175 LEVTYRFNDF--VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---S 247 (394)
Q Consensus 175 l~~~~~~~~~--~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---~ 247 (394)
.+++++|.+. ...++++++|++.+ +++|+|+||||||||+++|+|...+ ..|..++ +.+.+.+.. .
T Consensus 7 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~-----~~~~~G~--i~~~g~~~~~~~~ 79 (226)
T cd03234 7 WDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEG-----GGTTSGQ--ILFNGQPRKPDQF 79 (226)
T ss_pred ecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCC-----CCCCceE--EEECCEECChHHh
Confidence 4556677553 25699999999887 9999999999999999999998830 0133333 223332211 1
Q ss_pred cCCceeeeccCCCCCcccccccccchhh----------hhhcCCcc-ccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFLSKF----------ECSQMPHS-LLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~-~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
..+..+.++....+.+.+...+..+... .......+ +++.+++.+ .++.+| ||+||+.
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~------ 153 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVS------ 153 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHH------
Confidence 1234445555544555555444421100 01111223 566666543 467788 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCH-HHHHHH-HhHhhhccceeee
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT-QQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~-~~~~~~-~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ .+|+.. ...+.+++.++.+.+.++++++ |+. .++.++ |+++++++|+++.
T Consensus 154 -laral~~~p~illlDEP~~gLD~~~---~~~~~~~l~~~~~~~~tiii~s-----h~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 154 -IAVQLLWDPKVLILDEPTSGLDSFT---ALNLVSTLSQLARRNRIVILTI-----HQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred -HHHHHHhCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----cCCCHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999 888876 7888899988876677888888 665 466666 9999999999976
Q ss_pred cC
Q 016165 385 TP 386 (394)
Q Consensus 385 ~~ 386 (394)
.|
T Consensus 225 ~g 226 (226)
T cd03234 225 SG 226 (226)
T ss_pred cC
Confidence 43
No 188
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=5.3e-19 Score=155.71 Aligned_cols=155 Identities=21% Similarity=0.288 Sum_probs=110.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----c
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-----I 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-----~ 248 (394)
+++++|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .
T Consensus 5 ~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 5 NLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--------PDSGE--IKVLGKDIKKEPEEVK 72 (173)
T ss_pred EEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCeE--EEECCEEcccchHhhh
Confidence 44556765 4689999999887 999999999999999999999883 33333 2233322111 1
Q ss_pred CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl- 326 (394)
....+.++....+.+.+..++. . +| ||+||+. +||+++.+|+++|+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~-----------------------~--LS~G~~qrv~-------laral~~~p~illlD 120 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENL-----------------------K--LSGGMKQRLA-------LAQALLHDPELLILD 120 (173)
T ss_pred ccEEEEecCCccccCCcHHHHh-----------------------h--cCHHHHHHHH-------HHHHHHcCCCEEEEe
Confidence 1223333433222222222110 0 88 9999999 99999999999999
Q ss_pred ----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 327 ----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 327 ----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
.+|... ...+.++++.+.+++.++++++ |+.+.+... ++++.+++|++
T Consensus 121 EPt~~LD~~~---~~~l~~~l~~~~~~g~tiii~t-----h~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 121 EPTSGLDPES---RREFWELLRELKKEGKTILLSS-----HILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCccCCCHHH---HHHHHHHHHHHHHCCCEEEEEC-----CCHHHHHHhCCEEEEEeCCCC
Confidence 888876 7888899999877677777777 788887766 88888888864
No 189
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.8e-19 Score=165.30 Aligned_cols=186 Identities=16% Similarity=0.268 Sum_probs=132.1
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IP 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~ 249 (394)
++++.|++ . ++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+... ..
T Consensus 5 ~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--------p~~G~--v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 5 NLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--------PDSGK--ILLNGKDITNLPPEKR 71 (235)
T ss_pred eEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--------CCceE--EEECCEEcCcCChhHc
Confidence 44556764 3 79999999887 999999999999999999999983 33333 2333332211 12
Q ss_pred CceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
...++.+....+...+..++..+. ..+..+.+.++++.+++.+ .+..+| ||+||+. +|+++
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral 144 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVA-------IARAL 144 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHH-------HHHHH
Confidence 345555555445444444443211 1122333456677777643 677888 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
+.+|+++++ ++|... ...+.++++.+..+ +.++++++ |+..++... ++++.+++|+++..+...
T Consensus 145 ~~~p~llllDEPt~gLD~~~---~~~l~~~l~~~~~~~~~tili~t-----H~~~~~~~~~d~i~~l~~G~i~~~~~~~ 215 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRT---KEKLREELKKIRKEFGVTVLHVT-----HDFEEAWALADKVAIMLNGKLIQVGKPE 215 (235)
T ss_pred HcCCCEEEECCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999 888876 77888888888654 77888888 788887775 999999999998766543
No 190
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.8e-19 Score=188.56 Aligned_cols=181 Identities=18% Similarity=0.201 Sum_probs=133.4
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---------cCCceeee
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---------IPGNTVAV 255 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---------~~~~~~~~ 255 (394)
.++++++|++.. +++|+|+||||||||+++|+|... |..+. +.+.+.+... .....+++
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--------p~~G~--I~~~g~~i~~~~~~~~~~~~~~i~~v~ 407 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--------SQGGE--IIFNGQRIDTLSPGKLQALRRDIQFIF 407 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--------CCCcE--EEECCEECCcCCHHHHHHhcCCeEEEe
Confidence 589999999887 999999999999999999999983 33333 2233322211 11344555
Q ss_pred ccCC--CCCcccccccccc--------hhhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 256 QADM--PFSGLTTFGTAFL--------SKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 256 ~~~~--~~~g~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
|... .+...+...+... ...+..+.+.++++.+++. + .|+.+| ||+||+. |||+++.
T Consensus 408 Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~-------iAraL~~ 480 (623)
T PRK10261 408 QDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRIC-------IARALAL 480 (623)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH-------HHHHHhc
Confidence 5532 2333343333211 1112334566788888884 2 789999 9999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceee
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~ 392 (394)
+|+++|+ ++|+.. +..+.++|++++++ +.++|+|+ |+.+.+..+ |++++|++|+++..+++.+++
T Consensus 481 ~p~llllDEPts~LD~~~---~~~i~~ll~~l~~~~g~tvi~is-----Hdl~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 481 NPKVIIADEAVSALDVSI---RGQIINLLLDLQRDFGIAYLFIS-----HDMAVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred CCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999 889876 88899999998764 78888888 888888887 999999999999888776654
No 191
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.79 E-value=2.2e-19 Score=183.77 Aligned_cols=190 Identities=17% Similarity=0.214 Sum_probs=135.9
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| .|..+. +.+.+++...
T Consensus 6 ~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~------~~~~G~--i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 6 GIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPH------GTWDGE--IYWSGSPLKASNIRDT 75 (500)
T ss_pred eEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC------CCCCeE--EEECCEECCCCCHHHH
Confidence 45667766 5699999999887 9999999999999999999998731 012333 3333332211
Q ss_pred -cCCceeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccC
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~ 309 (394)
..+..++++....+..++...+..+. .....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~---- 151 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE---- 151 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH----
Confidence 12344555554444444444333111 1122334566777777642 378899 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+|++++.+|+++|+ ++|+.. ...+.++|+++++++.++|+++ |+.+.+..+ ++++++++|+++
T Consensus 152 ---iA~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tviiit-----Hd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 152 ---IAKALNKQARLLILDEPSSSLTEKE---TEILLDIIRDLKAHGVACVYIS-----HKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred ---HHHHHhhCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CcHHHHHHhCCEEEEEeCCeEe
Confidence 99999999999999 888876 8888899999887788888888 888888876 999999999998
Q ss_pred ecCccce
Q 016165 384 NTPEVVR 390 (394)
Q Consensus 384 ~~~~~~~ 390 (394)
..++..+
T Consensus 221 ~~~~~~~ 227 (500)
T TIGR02633 221 ATKDMST 227 (500)
T ss_pred eecCccc
Confidence 7665543
No 192
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=2.2e-19 Score=183.37 Aligned_cols=188 Identities=15% Similarity=0.108 Sum_probs=130.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+|+|+|... |..+. +.+.+.+....
T Consensus 7 ~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--------p~~G~--i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 7 SQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--------LLSGE--RQSQFSHITRLSFEQ 74 (490)
T ss_pred EeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--------CCCce--EEECCcccccCCHHH
Confidence 356778876 5699999999877 999999999999999999999984 22232 12222211100
Q ss_pred --CCceeeeccCCC-C-------CcccccccccchhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 249 --PGNTVAVQADMP-F-------SGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 249 --~~~~~~~~~~~~-~-------~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
....++++.... + .+.+..++.... ....+.+.++++.+++.+ .++.+| ||+||+. +
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------l 146 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL-------L 146 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH-------H
Confidence 012222222110 0 011222211110 122344567777887754 688999 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
|++++.+|+++|+ ++|+.. ...+.++++++++++.++|+++ |+.+.+..+ ++++++++|+++..+.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~g~tvii~t-----H~~~~~~~~~d~v~~l~~G~i~~~~~ 218 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVAS---RQQLAELLASLHQSGITLVLVL-----NRFDEIPDFVQFAGVLADCTLAETGE 218 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHhcCCeEEEEe-----CCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999 899876 8888999999877778888888 888888877 9999999999987765
Q ss_pred cce
Q 016165 388 VVR 390 (394)
Q Consensus 388 ~~~ 390 (394)
..+
T Consensus 219 ~~~ 221 (490)
T PRK10938 219 REE 221 (490)
T ss_pred HHH
Confidence 544
No 193
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.79 E-value=1.4e-19 Score=170.58 Aligned_cols=191 Identities=23% Similarity=0.283 Sum_probs=128.3
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc--
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-- 248 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-- 248 (394)
..-++++.|.+....++++++|++.+ +++|+|+||+|||||+++|+|... ..++ +.+.+.+...+
T Consensus 4 ~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---------~~G~--I~i~g~~i~~~~~ 72 (275)
T cd03289 4 TVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---------TEGD--IQIDGVSWNSVPL 72 (275)
T ss_pred EEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---------CCcE--EEECCEEhhhCCH
Confidence 33456777843225699999999987 999999999999999999999872 1222 33333332211
Q ss_pred ----CCceeeeccCCCCCccccccccc-chhhhhhcCCccccccceeec----CCCC-----------Cc-hhhhhhhcc
Q 016165 249 ----PGNTVAVQADMPFSGLTTFGTAF-LSKFECSQMPHSLLEHITLVD----TPGV-----------LS-GEKQRTQRA 307 (394)
Q Consensus 249 ----~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~l~D----t~g~-----------ls-Ge~qrv~~~ 307 (394)
....++++....|.+ +...+.. .... ..+...++++.+++.+ .|+. +| ||+||+.
T Consensus 73 ~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~~-~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~-- 148 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKW-SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC-- 148 (275)
T ss_pred HHHhhhEEEECCCcccchh-hHHHHhhhccCC-CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH--
Confidence 134445555544443 3333331 1100 1112233344444432 3443 78 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ .+|+.. ...+.+.+..+. .++++|+|+ |+.+.+..+++++++++|++
T Consensus 149 -----LaRall~~p~illlDEpts~LD~~~---~~~l~~~l~~~~-~~~tii~is-----H~~~~i~~~dri~vl~~G~i 214 (275)
T cd03289 149 -----LARSVLSKAKILLLDEPSAHLDPIT---YQVIRKTLKQAF-ADCTVILSE-----HRIEAMLECQRFLVIEENKV 214 (275)
T ss_pred -----HHHHHhcCCCEEEEECccccCCHHH---HHHHHHHHHHhc-CCCEEEEEE-----CCHHHHHhCCEEEEecCCeE
Confidence 99999999999999 788776 677778888764 367888888 66766665699999999999
Q ss_pred eecCccceee
Q 016165 383 LNTPEVVRVY 392 (394)
Q Consensus 383 ~~~~~~~~v~ 392 (394)
+..+.+.+++
T Consensus 215 ~~~g~~~~l~ 224 (275)
T cd03289 215 RQYDSIQKLL 224 (275)
T ss_pred eecCCHHHHh
Confidence 9988876654
No 194
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.78 E-value=1.7e-19 Score=165.48 Aligned_cols=176 Identities=20% Similarity=0.228 Sum_probs=121.5
Q ss_pred eeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeee
Q 016165 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAV 255 (394)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~ 255 (394)
+++|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+.... ..
T Consensus 29 ~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------p~~G~--i~~~g~~~~~~-~~---- 91 (224)
T cd03220 29 KGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--------PDSGT--VTVRGRVSSLL-GL---- 91 (224)
T ss_pred hhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEEchhh-cc----
Confidence 447777 6699999999887 999999999999999999999883 33443 22222211100 00
Q ss_pred ccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCE
Q 016165 256 QADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (394)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dl 323 (394)
........+...+..+. .....+...++++.+++.+ .++.+| ||+||+. +||+++.+|++
T Consensus 92 -~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------laral~~~p~l 163 (224)
T cd03220 92 -GGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLA-------FAIATALEPDI 163 (224)
T ss_pred -cccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 00001122222222110 1112223445555666543 568889 9999999 99999999999
Q ss_pred EEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 324 ILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 324 lLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
+|+ .+|+.. ...+.++++.+.+++.++|+++ |+.+++..+ ++++++++|+++..|
T Consensus 164 lllDEP~~gLD~~~---~~~~~~~l~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 164 LLIDEVLAVGDAAF---QEKCQRRLRELLKQGKTVILVS-----HDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEecC
Confidence 999 888876 7788899988876677788887 888888776 999999999987643
No 195
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.2e-19 Score=166.50 Aligned_cols=194 Identities=20% Similarity=0.282 Sum_probs=131.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|+. ..++++++|++.+ +++|+|+||||||||+++|+|...| ....|..++ +.+.+++..
T Consensus 8 ~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~p~~~~~G~--v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 8 KDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDD---IENIKITGE--IKFEGQNIYGSKMDL 80 (251)
T ss_pred EeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccc---ccCCCcceE--EEECCEEcccccchH
Confidence 456667876 5699999999887 9999999999999999999998730 000012333 333333221
Q ss_pred --ccCCceeeeccCCCCCcccccccccch-h-------hhhhcCCccccccceee-------c-CCCCCc-hhhhhhhcc
Q 016165 247 --SIPGNTVAVQADMPFSGLTTFGTAFLS-K-------FECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 247 --~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-------~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~ 307 (394)
...+..+..+....+. .+...+..+. . ....+.+.++++.+++. + .+..+| ||+||+.
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~-- 157 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRIC-- 157 (251)
T ss_pred HHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHH--
Confidence 0113444555544343 3444433211 0 01112334455555552 2 567788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++.+ +.++|+++ |+.+.+.++ ++++++++|+
T Consensus 158 -----laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiiiis-----H~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14251 158 -----IARALAVRPKVVLLDEPTSALDPIS---SSEIEETLMELKH-QYTFIMVT-----HNLQQAGRISDQTAFLMNGD 223 (251)
T ss_pred -----HHHHHhcCCCEEEecCCCccCCHHH---HHHHHHHHHHHHc-CCeEEEEE-----CCHHHHHhhcCEEEEEECCE
Confidence 99999999999999 888876 7788888988854 57777787 888888776 9999999999
Q ss_pred eeecCccceee
Q 016165 382 VLNTPEVVRVY 392 (394)
Q Consensus 382 i~~~~~~~~v~ 392 (394)
++..++..+++
T Consensus 224 i~~~~~~~~~~ 234 (251)
T PRK14251 224 LIEAGPTEEMF 234 (251)
T ss_pred EEEeCCHHHHH
Confidence 98877665543
No 196
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=6.8e-19 Score=155.75 Aligned_cols=156 Identities=24% Similarity=0.397 Sum_probs=108.6
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----- 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----- 248 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+++....
T Consensus 5 ~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 5 NVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--------PDSGS--ILIDGEDLTDLEDELP 72 (178)
T ss_pred EEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEEccccchhHH
Confidence 44567765 5689999999887 999999999999999999999883 33443 32333221111
Q ss_pred ---CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEE
Q 016165 249 ---PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (394)
Q Consensus 249 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dll 324 (394)
....+..+....+.+.+..++ +.+. +| ||+||+. +|++++.+|+++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~------------------l~~~-----lS~G~~qr~~-------la~al~~~p~ll 122 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLEN------------------IALG-----LSGGQQQRVA-------LARALAMDPDVL 122 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHh------------------eeec-----CCHHHHHHHH-------HHHHHHCCCCEE
Confidence 122233333222222211111 1111 88 9999999 999999999999
Q ss_pred EE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 325 LL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 325 Ll-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
|+ .+|+.. ...+.+++++++++ +.++++++ |+.+.+..+ ++++.+++|+
T Consensus 123 ilDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 123 LLDEPTSALDPIT---RREVRALLKSLQAQLGITVVLVT-----HDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhcCEEEEEeCCC
Confidence 99 888876 78888999988776 67777777 888887765 8888887764
No 197
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.5e-19 Score=170.63 Aligned_cols=195 Identities=19% Similarity=0.248 Sum_probs=131.2
Q ss_pred cCCceeeeeecCCc---CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc
Q 016165 172 LKPLEVTYRFNDFV---SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR 246 (394)
Q Consensus 172 ~~~l~~~~~~~~~~---~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~ 246 (394)
++--++++.|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+..
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~i~ 76 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--------SETGQ--TIVGDYAIP 76 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCce--EEECCEEcc
Confidence 33345666776521 2489999999887 999999999999999999999984 22232 222222110
Q ss_pred -----------ccCCceeeeccCC-CCCcccccccccch-------hhhhhcCCccccccceee-c----CCCCCc-hhh
Q 016165 247 -----------SIPGNTVAVQADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLV-D----TPGVLS-GEK 301 (394)
Q Consensus 247 -----------~~~~~~~~~~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~ 301 (394)
......++.+... .+...+...+..+. .....+.+.++++.+++. + .++.+| ||+
T Consensus 77 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 77 ANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred ccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHH
Confidence 0112344444431 11112333332111 111223345566666663 2 578889 999
Q ss_pred hhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhH
Q 016165 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGA 374 (394)
Q Consensus 302 qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~ 374 (394)
||+. +||+++.+|+++|+ ++|+.. ...+.++++++.+. +.++|+++ |+.+.+.++ +++
T Consensus 157 qrv~-------laral~~~p~lLlLDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiiiis-----H~~~~~~~~~d~i 221 (289)
T PRK13645 157 RRVA-------LAGIIAMDGNTLVLDEPTGGLDPKG---EEDFINLFERLNKEYKKRIIMVT-----HNMDQVLRIADEV 221 (289)
T ss_pred HHHH-------HHHHHHhCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHHhCCEE
Confidence 9999 99999999999999 888876 78888889888653 77888888 888888776 999
Q ss_pred hhhccceeeecCcccee
Q 016165 375 LMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 375 ~~~~~G~i~~~~~~~~v 391 (394)
+++++|+++..+...++
T Consensus 222 ~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 222 IVMHEGKVISIGSPFEI 238 (289)
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999877665443
No 198
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.8e-19 Score=166.82 Aligned_cols=195 Identities=18% Similarity=0.305 Sum_probs=131.5
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
--++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|...| ....|..+. +.+.+.+...
T Consensus 23 ~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~~~~~~G~--i~~~g~~~~~~~~~ 95 (267)
T PRK14237 23 TKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDT---IDIARVTGQ--ILYRGIDINRKEIN 95 (267)
T ss_pred EeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc---cCCCCcceE--EEECCEEcccccCC
Confidence 3455667765 5699999999887 9999999999999999999998731 100123333 3333332211
Q ss_pred ----cCCceeeeccCCCCCcccccccccchh--------hhhhcCCccccccceee-------c-CCCCCc-hhhhhhhc
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQR 306 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~ 306 (394)
..+..++++....+. .+...+..+.. ......+.++++.+++. + .++.+| ||+||+.
T Consensus 96 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~- 173 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC- 173 (267)
T ss_pred hHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH-
Confidence 113444555543343 24444432110 01122233445555441 2 577888 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+||+++.+|+++|+ .+|+.. ...+.++++.+.+ +.++|+++ |+.+.+.++ ++++++++|
T Consensus 174 ------laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiii~t-----H~~~~~~~~~d~i~~l~~G 238 (267)
T PRK14237 174 ------IARAIAVKPDILLMDEPASALDPIS---TMQLEETMFELKK-NYTIIIVT-----HNMQQAARASDYTAFFYLG 238 (267)
T ss_pred ------HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHhc-CCEEEEEe-----cCHHHHHHhcCEEEEEECC
Confidence 99999999999999 788765 7788889988864 57777777 888888776 999999999
Q ss_pred eeeecCccceee
Q 016165 381 KVLNTPEVVRVY 392 (394)
Q Consensus 381 ~i~~~~~~~~v~ 392 (394)
+++..++..+++
T Consensus 239 ~i~~~g~~~~~~ 250 (267)
T PRK14237 239 DLIEYDKTRNIF 250 (267)
T ss_pred EEEEeCCHHHHh
Confidence 999877765543
No 199
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.5e-19 Score=166.15 Aligned_cols=193 Identities=17% Similarity=0.275 Sum_probs=130.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... +....|..++ +.+++.+...
T Consensus 7 ~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~--i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 7 ENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGK--IYFKGQDIYDPQLDV 79 (250)
T ss_pred EeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceE--EEECCEEcccchhhH
Confidence 345667765 5689999999887 999999999999999999999873 1100123333 3333332210
Q ss_pred ---cCCceeeeccCCCCCcccccccccchh--------hhhhcCCccccccceee-------c-CCCCCc-hhhhhhhcc
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~ 307 (394)
.....+.++....+. .+...+..+.. ....+.+.++++.+++. + .++.+| ||+||+.
T Consensus 80 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~-- 156 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLC-- 156 (250)
T ss_pred HHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHH--
Confidence 123455555554443 34444332110 01112233444555442 2 567788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+|++++.+|+++|+ .+|+.. ...+.+++.++.+ +.++++++ |+.+.+... ++++++++|+
T Consensus 157 -----la~al~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tili~s-----H~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14262 157 -----IARALAVEPEVILLDEPTSALDPIA---TQRIEKLLEELSE-NYTIVIVT-----HNIGQAIRIADYIAFMYRGE 222 (250)
T ss_pred -----HHHHHhCCCCEEEEeCCccccCHHH---HHHHHHHHHHHhc-CcEEEEEe-----CCHHHHHHhCCEEEEEECCE
Confidence 99999999999999 888876 7788889988865 56777777 788877776 9999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..++..++
T Consensus 223 i~~~g~~~~~ 232 (250)
T PRK14262 223 LIEYGPTREI 232 (250)
T ss_pred EEEecCHHHH
Confidence 9877765543
No 200
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.78 E-value=3.8e-19 Score=157.64 Aligned_cols=162 Identities=21% Similarity=0.323 Sum_probs=114.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|.. .|..++ +.+.+.+.......
T Consensus 4 ~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~--------~~~~G~--v~~~g~~~~~~~~~-- 69 (180)
T cd03214 4 NLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL--------KPSSGE--ILLDGKDLASLSPK-- 69 (180)
T ss_pred EEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcE--EEECCEECCcCCHH--
Confidence 44667766 5699999998887 99999999999999999999988 344444 22232211100000
Q ss_pred eeccCCCCCcccccccccchhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE--
Q 016165 254 AVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-- 326 (394)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-- 326 (394)
.. .... ....++++.+++.+ .+..+| ||+||+. +||+++.+|+++|+
T Consensus 70 ---------~~--~~~i--------~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~-------laral~~~p~llllDE 123 (180)
T cd03214 70 ---------EL--ARKI--------AYVPQALELLGLAHLADRPFNELSGGERQRVL-------LARALAQEPPILLLDE 123 (180)
T ss_pred ---------HH--HHHH--------hHHHHHHHHcCCHhHhcCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEeC
Confidence 00 0000 00001334444433 567788 9999999 99999999999999
Q ss_pred ---EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 327 ---LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 327 ---~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
.+|+.. ...+.++++.++++ +.++|+++ |+.+.+.+. ++++++++|+++..
T Consensus 124 P~~~LD~~~---~~~~~~~l~~~~~~~~~tiii~s-----h~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 124 PTSHLDIAH---QIELLELLRRLARERGKTVVMVL-----HDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred CccCCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEec
Confidence 788766 77888899888765 67788887 788887676 99999999998653
No 201
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4e-19 Score=165.90 Aligned_cols=194 Identities=18% Similarity=0.280 Sum_probs=130.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|...+ .+. .+..++ +.+.+++..
T Consensus 9 ~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~p~--~~~~G~--i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 9 SDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL-NPE--VTITGS--IVYNGHNIYSPRTDT 81 (252)
T ss_pred EeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccccc-CCC--CCccce--EEECCEECcCcccch
Confidence 455667775 5699999999887 9999999999999999999997520 010 011333 333333211
Q ss_pred --ccCCceeeeccCCCCCcccccccccchh--------hhhhcCCcccccccee-------ec-CCCCCc-hhhhhhhcc
Q 016165 247 --SIPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 247 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv~~~ 307 (394)
......++++....+. .+..++..+.. ....+.+.++++.+++ .+ .++.+| ||+||+.
T Consensus 82 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~-- 158 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC-- 158 (252)
T ss_pred HhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH--
Confidence 0123445555544443 34444432110 0112223344555543 12 678889 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+|++++.+|+++|+ ++|... ...+.++|+++.+ +.++++++ |+.+.+... ++++++++|+
T Consensus 159 -----laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tii~~s-----H~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14239 159 -----IARVLATSPKIILLDEPTSALDPIS---AGKIEETLLGLKD-DYTMLLVT-----RSMQQASRISDRTGFFLDGD 224 (252)
T ss_pred -----HHHHHhcCCCEEEEcCCccccCHHH---HHHHHHHHHHHhh-CCeEEEEE-----CCHHHHHHhCCEEEEEECCE
Confidence 99999999999999 888876 7788889988865 56777777 788887776 9999999999
Q ss_pred eeecCccceee
Q 016165 382 VLNTPEVVRVY 392 (394)
Q Consensus 382 i~~~~~~~~v~ 392 (394)
++..++..+++
T Consensus 225 i~~~g~~~~~~ 235 (252)
T PRK14239 225 LIEYNDTKQMF 235 (252)
T ss_pred EEEeCCHHHHH
Confidence 98877665543
No 202
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.78 E-value=2.3e-19 Score=166.00 Aligned_cols=189 Identities=16% Similarity=0.251 Sum_probs=122.8
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----- 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----- 248 (394)
++++.|++....++++++|++.+ +++|+|+||||||||+++|+|...| ..++ +.+.+.+....
T Consensus 5 ~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--------~~G~--i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 5 HVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--------ENGR--VLVDGHDLALADPAWL 74 (237)
T ss_pred EEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--------CCCE--EEECCeehHhcCHHHH
Confidence 45567753224589999998877 9999999999999999999999842 2222 22222221110
Q ss_pred -CCceeeeccCCCCCcccccccccch-----hhh-----hhcCCccccccc--ee----ecCCCCCc-hhhhhhhcccCh
Q 016165 249 -PGNTVAVQADMPFSGLTTFGTAFLS-----KFE-----CSQMPHSLLEHI--TL----VDTPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 249 -~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~-----~~~~~~~~l~~~--~l----~Dt~g~ls-Ge~qrv~~~~~~ 310 (394)
....+.++....+. .+...+..+. ... ......++++.+ ++ ...+..+| ||+||+.
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~----- 148 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIA----- 148 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHH-----
Confidence 12233333332222 1222222110 000 111122333332 22 22578889 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeec
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNT 385 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~ 385 (394)
+||+++.+|+++|+ .+|+.. ...+.++++.+.+ +.++++++ |+.+.+..+++++++++|+++..
T Consensus 149 --laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~s-----H~~~~~~~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 149 --IARALIHNPRILIFDEATSALDYES---EHAIMRNMHDICA-GRTVIIIA-----HRLSTVKNADRIIVMEKGRIVEQ 217 (237)
T ss_pred --HHHHHhhCCCEEEEeCCcccCCHHH---HHHHHHHHHHhcC-CCEEEEEe-----CCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999 888876 7888899988864 77778887 77777754599999999999887
Q ss_pred Ccccee
Q 016165 386 PEVVRV 391 (394)
Q Consensus 386 ~~~~~v 391 (394)
++..++
T Consensus 218 ~~~~~~ 223 (237)
T cd03252 218 GSHDEL 223 (237)
T ss_pred cCHHHH
Confidence 766544
No 203
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.9e-19 Score=166.68 Aligned_cols=194 Identities=19% Similarity=0.279 Sum_probs=130.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| .+. .+..++ +.+.+++..
T Consensus 16 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~p~--~~~~G~--i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 16 NGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQM-VPN--VKLTGE--MNYNGSNILKGKVDL 88 (259)
T ss_pred eeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccC-CCC--CCCceE--EEECCEEccccccCH
Confidence 455667775 5699999999887 9999999999999999999998731 000 012232 333333211
Q ss_pred --ccCCceeeeccCCCCCcccccccccch-h-------hhhhcCCccccccceee-------c-CCCCCc-hhhhhhhcc
Q 016165 247 --SIPGNTVAVQADMPFSGLTTFGTAFLS-K-------FECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 247 --~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-------~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~ 307 (394)
......+.++....+.. +...+..+. . .+..+.+.++++.+++. + .++.+| ||+||+.
T Consensus 89 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~-- 165 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC-- 165 (259)
T ss_pred HHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH--
Confidence 01133445555444433 444333111 0 11122234445555542 2 567788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+|++++.+|+++|+ ++|+.. ...+.++++++.+ +.++|+++ |+.+.+..+ ++++++++|+
T Consensus 166 -----laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiiivt-----H~~~~~~~~~d~i~~l~~G~ 231 (259)
T PRK14274 166 -----IARALATNPDVLLMDEPTSALDPVS---TRKIEELILKLKE-KYTIVIVT-----HNMQQAARVSDQTAFFYMGE 231 (259)
T ss_pred -----HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHhc-CCEEEEEE-----cCHHHHHHhCCEEEEEECCE
Confidence 99999999999999 888876 7888899988865 57777777 788887776 9999999999
Q ss_pred eeecCccceee
Q 016165 382 VLNTPEVVRVY 392 (394)
Q Consensus 382 i~~~~~~~~v~ 392 (394)
++..+...+++
T Consensus 232 i~~~g~~~~~~ 242 (259)
T PRK14274 232 LVECNDTNKMF 242 (259)
T ss_pred EEEECCHHHHh
Confidence 99877765543
No 204
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=7.3e-19 Score=159.33 Aligned_cols=183 Identities=17% Similarity=0.218 Sum_probs=120.8
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++....++++++|++.+ +++|+|+||+|||||+++|+|... |..++ +.+.+.+...
T Consensus 10 ~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~~ 79 (207)
T cd03369 10 ENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--------AEEGK--IEIDGIDISTIPLED 79 (207)
T ss_pred EEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--------CCCCe--EEECCEEhHHCCHHH
Confidence 455667764223589999999887 999999999999999999999983 33333 2222222110
Q ss_pred -cCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEE
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllL 325 (394)
.....+.++....+.+ +..++.........+ ++.+.+.+...+..+| ||+||+. +||+++.+|+++|
T Consensus 80 ~~~~i~~v~q~~~~~~~-tv~~~l~~~~~~~~~---~~~~~l~~~~~~~~LS~G~~qrv~-------laral~~~p~lll 148 (207)
T cd03369 80 LRSSLTIIPQDPTLFSG-TIRSNLDPFDEYSDE---EIYGALRVSEGGLNLSQGQRQLLC-------LARALLKRPRVLV 148 (207)
T ss_pred HHhhEEEEecCCcccCc-cHHHHhcccCCCCHH---HHHHHhhccCCCCcCCHHHHHHHH-------HHHHHhhCCCEEE
Confidence 1233444454433332 333333111000001 1111222334678888 9999999 9999999999999
Q ss_pred E-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCc
Q 016165 326 L-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPE 387 (394)
Q Consensus 326 l-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~ 387 (394)
+ .+|+.. ...+.++++++. ++.++|+++ |+.+.+...++++.+++|+++..+.
T Consensus 149 lDEP~~~LD~~~---~~~l~~~l~~~~-~~~tiii~t-----h~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 149 LDEATASIDYAT---DALIQKTIREEF-TNSTILTIA-----HRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EeCCcccCCHHH---HHHHHHHHHHhc-CCCEEEEEe-----CCHHHHhhCCEEEEEECCEEEecCC
Confidence 9 788765 777888888875 477788888 6676665568999999999977654
No 205
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.78 E-value=4.7e-19 Score=162.03 Aligned_cols=184 Identities=19% Similarity=0.247 Sum_probs=116.7
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++....++++++|++.+ +++|+|+||||||||+++|+|...| ..+. +.+.+.+...
T Consensus 6 ~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--------~~G~--i~~~g~~~~~~~~~~ 75 (220)
T cd03245 6 RNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--------TSGS--VLLDGTDIRQLDPAD 75 (220)
T ss_pred EEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--------CCCe--EEECCEEhHHCCHHH
Confidence 345566754223589999998887 9999999999999999999999842 2222 2222221110
Q ss_pred -cCCceeeeccCCCCCcccccccccch-hhhhhcCCccccccceee---------------cCCCCCc-hhhhhhhcccC
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS-KFECSQMPHSLLEHITLV---------------DTPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~l~---------------Dt~g~ls-Ge~qrv~~~~~ 309 (394)
.....+..+....+. .+...+..+. .......+.++++.+++. +.++.+| ||+||+.
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~---- 150 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVA---- 150 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHH----
Confidence 012233333332222 2222222110 000011112233333332 2346888 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLN 384 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.++ .++|+++ |+.+....+++++.+++|+++.
T Consensus 151 ---la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~-~tii~~s-----H~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 151 ---LARALLNDPPILLLDEPTSAMDMNS---EERLKERLRQLLGD-KTLIIIT-----HRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred ---HHHHHhcCCCEEEEeCccccCCHHH---HHHHHHHHHHhcCC-CEEEEEe-----CCHHHHHhCCEEEEEeCCeEee
Confidence 99999999999999 888876 88888999988764 6777777 6666653238999999999875
Q ss_pred c
Q 016165 385 T 385 (394)
Q Consensus 385 ~ 385 (394)
.
T Consensus 219 ~ 219 (220)
T cd03245 219 D 219 (220)
T ss_pred c
Confidence 4
No 206
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.8e-19 Score=165.14 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=129.1
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------- 246 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------- 246 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|...| ..+.|..+. +.+.+.+..
T Consensus 8 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~~~~G~--v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 8 NLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDL---IEGVKITGK--LTMDGEDIYGNIDVAD 80 (249)
T ss_pred ccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhccc---ccCCCCceE--EEECCEEcccccchHH
Confidence 45667765 5699999999887 9999999999999999999998741 111122333 333332211
Q ss_pred ccCCceeeeccCCCCCcccccccccchh--------hhhhcCCcccccccee-------ec-CCCCCc-hhhhhhhcccC
Q 016165 247 SIPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv~~~~~ 309 (394)
...+..+.++....+. .+...+..+.. ....+.+.++++.+++ .+ .++.+| ||+||+.
T Consensus 81 ~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~---- 155 (249)
T PRK14253 81 LRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC---- 155 (249)
T ss_pred HHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH----
Confidence 0123445555544443 34333332110 0111222333444433 12 567888 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++.+ +.++++++ |+.+.+..+ ++++++++|+++
T Consensus 156 ---laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tii~~s-----h~~~~~~~~~d~i~~l~~G~i~ 223 (249)
T PRK14253 156 ---IARTIAMEPDVILMDEPTSALDPIA---THKIEELMEELKK-NYTIVIVT-----HSMQQARRISDRTAFFLMGELV 223 (249)
T ss_pred ---HHHHHHcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEe-----cCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999 888876 7888899998866 46777777 888888876 999999999998
Q ss_pred ecCcccee
Q 016165 384 NTPEVVRV 391 (394)
Q Consensus 384 ~~~~~~~v 391 (394)
..++..++
T Consensus 224 ~~g~~~~~ 231 (249)
T PRK14253 224 EHDDTQVI 231 (249)
T ss_pred EeCCHHHH
Confidence 87665443
No 207
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.78 E-value=3.4e-19 Score=161.28 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=112.1
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------- 246 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------- 246 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+..
T Consensus 3 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 3 NISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--------FDSGQ--VYLNGKETPPLNSKKA 70 (206)
T ss_pred ceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--------CCCeE--EEECCEEccccchhhH
Confidence 34557765 5699999999887 999999999999999999999883 33333 223333211
Q ss_pred ---ccCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 247 ---SIPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 247 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
...+..+..+....+...+...+..+. .....+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~------ 144 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVA------ 144 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHH------
Confidence 012344455554444444544443211 1122344566777777643 567788 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEE
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~ 357 (394)
+|++++.+|+++|+ ++|+.. ...+.++++++.+.+.++++++
T Consensus 145 -laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~s 191 (206)
T TIGR03608 145 -LARAILKDPPLILADEPTGSLDPKN---RDEVLDLLLELNDEGKTIIIVT 191 (206)
T ss_pred -HHHHHHcCCCEEEEeCCcCCCCHHH---HHHHHHHHHHHHhcCCEEEEEe
Confidence 99999999999999 888876 7888899988876678888888
No 208
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.2e-19 Score=165.30 Aligned_cols=193 Identities=19% Similarity=0.260 Sum_probs=129.8
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|...+ ....+..++ +.+.+++...
T Consensus 10 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~~~~G~--i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 10 KNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL---IPGCRITGD--ILYNGENIMDSGADV 82 (253)
T ss_pred eeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC---CCCCCcceE--EEECCEEccccccch
Confidence 345667776 5699999999888 9999999999999999999998631 000011233 3334433211
Q ss_pred ---cCCceeeeccCCCCCcccccccccch-h-------hhhhcCCccccccceee--------cCCCCCc-hhhhhhhcc
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLS-K-------FECSQMPHSLLEHITLV--------DTPGVLS-GEKQRTQRA 307 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~-~-------~~~~~~~~~~l~~~~l~--------Dt~g~ls-Ge~qrv~~~ 307 (394)
.....+.++....+.. +..++..+. . ......+.++++.+++. ..++.+| ||+||+.
T Consensus 83 ~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~-- 159 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC-- 159 (253)
T ss_pred hhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH--
Confidence 1234445555444432 444443211 0 11122233444444442 2567788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+||+++.+|+++|+ .+|+.. ...+.++++.+.+ +.++++++ |+.+.+.+. ++++++++|+
T Consensus 160 -----laral~~~p~lllLDEP~~gLD~~~---~~~l~~~l~~~~~-~~tvii~s-----h~~~~~~~~~d~v~~l~~G~ 225 (253)
T PRK14261 160 -----IARTLAVNPEVILMDEPCSALDPIA---TAKIEDLIEDLKK-EYTVIIVT-----HNMQQAARVSDYTGFMYLGK 225 (253)
T ss_pred -----HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHhh-CceEEEEE-----cCHHHHHhhCCEEEEEECCE
Confidence 99999999999999 888876 7788888888865 46777777 888888776 9999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..+...++
T Consensus 226 i~~~g~~~~~ 235 (253)
T PRK14261 226 LIEFDKTTQI 235 (253)
T ss_pred EEEcCCHHHH
Confidence 9887765544
No 209
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=4e-19 Score=162.62 Aligned_cols=186 Identities=20% Similarity=0.276 Sum_probs=117.8
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++..+.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~ 75 (221)
T cd03244 6 KNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--------LSSGS--ILIDGVDISKIGLHD 75 (221)
T ss_pred EEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--------CCCCE--EEECCEEhHhCCHHH
Confidence 355667764324699999999887 999999999999999999999984 22232 2222221110
Q ss_pred -cCCceeeeccCCCCCcccccccccchhhhhhcCCcccccccee---------------ecCCCCCc-hhhhhhhcccCh
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL---------------VDTPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l---------------~Dt~g~ls-Ge~qrv~~~~~~ 310 (394)
.....+.++....+.+ +...+.........+...+.++.+++ ...+..+| ||+||+.
T Consensus 76 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~----- 149 (221)
T cd03244 76 LRSRISIIPQDPVLFSG-TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLC----- 149 (221)
T ss_pred HhhhEEEECCCCccccc-hHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHH-----
Confidence 1122333333322221 22222210000000001111111111 12567788 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeec
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNT 385 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~ 385 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++.. +.++++++ |+.+.+..+++++.+++|+++..
T Consensus 150 --laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tii~~s-----h~~~~~~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 150 --LARALLRKSKILVLDEATASVDPET---DALIQKTIREAFK-DCTVLTIA-----HRLDTIIDSDRILVLDKGRVVEF 218 (221)
T ss_pred --HHHHHhcCCCEEEEeCccccCCHHH---HHHHHHHHHHhcC-CCEEEEEe-----CCHHHHhhCCEEEEEECCeEEec
Confidence 99999999999999 888876 7788888888764 56777777 77777765689999999999876
Q ss_pred Cc
Q 016165 386 PE 387 (394)
Q Consensus 386 ~~ 387 (394)
++
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 54
No 210
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=5.9e-19 Score=152.47 Aligned_cols=184 Identities=17% Similarity=0.292 Sum_probs=131.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-CCce
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-PGNT 252 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-~~~~ 252 (394)
+.+..|.+....+++++|+++.. .|+++||+|||||||+|.++|... |..++.. .++....-. ....
T Consensus 8 ~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--------P~~G~i~--l~~r~i~gPgaerg 77 (259)
T COG4525 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--------PSRGSIQ--LNGRRIEGPGAERG 77 (259)
T ss_pred heEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--------cccceEE--ECCEeccCCCccce
Confidence 34557777445699999999887 999999999999999999999984 3333322 222211111 1233
Q ss_pred eeeccCCCCCcccccccc-c------chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhc
Q 016165 253 VAVQADMPFSGLTTFGTA-F------LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~-~------~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
+++|++-.++.++...|. | +.+.+..+.+.+.+..+++.| .+-++| |++||+. +||+++-+
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvG-------iARALa~e 150 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVG-------IARALAVE 150 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHH-------HHHHhhcC
Confidence 456666666666555554 2 233456677788888888877 567788 8999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHH-HHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc--ceeee
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVI-TSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL--GKVLN 384 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l-~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~--G~i~~ 384 (394)
|+.+++ .+|+-. .++..+++ +.++..++.+++|+ |+.++..-. ++.+++.- |+++.
T Consensus 151 P~~LlLDEPfgAlDa~t---Re~mQelLldlw~~tgk~~lliT-----H~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 151 PQLLLLDEPFGALDALT---REQMQELLLDLWQETGKQVLLIT-----HDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred cceEeecCchhhHHHHH---HHHHHHHHHHHHHHhCCeEEEEe-----ccHHHHHhhhheeEEecCCCceeeE
Confidence 999999 788765 56655554 44466688899999 777777666 77777764 67764
No 211
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=8.8e-20 Score=157.52 Aligned_cols=191 Identities=27% Similarity=0.390 Sum_probs=143.2
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEec-Cccccc---
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSG-VDDRSI--- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~-~~~~~~--- 248 (394)
.+++++|+++. ++++++|.+.+ .-+|+|||||||||+|..|+|.. .|.+++ +.+.+ .+....
T Consensus 9 ~~vsVsF~GF~--Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--------rp~~G~--v~f~g~~dl~~~~e~ 76 (249)
T COG4674 9 DGVSVSFGGFK--ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--------RPQEGE--VLFDGDTDLTKLPEH 76 (249)
T ss_pred eceEEEEccee--eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--------CCCcce--EEEcCchhhccCCHH
Confidence 34566888864 99999999988 88999999999999999999998 455555 34444 222222
Q ss_pred ----CCceeeeccCCCCCcccccccccch-------------h--hhhhcCCccccccceeec----CCCCCc-hhhhhh
Q 016165 249 ----PGNTVAVQADMPFSGLTTFGTAFLS-------------K--FECSQMPHSLLEHITLVD----TPGVLS-GEKQRT 304 (394)
Q Consensus 249 ----~~~~~~~~~~~~~~g~~~~~~~~~~-------------~--~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv 304 (394)
.|..+.+|.+..|..++.+.|..+. + .+...+..++|..+++.| .++.+| ||+|++
T Consensus 77 ~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwL 156 (249)
T COG4674 77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWL 156 (249)
T ss_pred HHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhh
Confidence 3777788888888888877776321 1 134557788999999987 789999 999999
Q ss_pred hcccChHHHHHHHhhcCCEEEE------EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhh
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL------LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMW 377 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl------~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~ 377 (394)
+ |..-++++|+++|+ +.|.. ....-++++.++. ...+++|- ||+..+..+ +++-++
T Consensus 157 E-------IGMll~Q~P~lLLlDEPvAGMTd~E----t~~taeLl~~la~-~hsilVVE-----HDM~Fvr~~A~~VTVl 219 (249)
T COG4674 157 E-------IGMLLAQDPKLLLLDEPVAGMTDAE----TEKTAELLKSLAG-KHSILVVE-----HDMGFVREIADKVTVL 219 (249)
T ss_pred h-------hheeeccCCcEEEecCccCCCcHHH----HHHHHHHHHHHhc-CceEEEEe-----ccHHHHHHhhheeEEE
Confidence 9 88889999999998 22222 3445577777764 34566666 999999888 999999
Q ss_pred ccceeeecC---------ccceeecC
Q 016165 378 SLGKVLNTP---------EVVRVYIG 394 (394)
Q Consensus 378 ~~G~i~~~~---------~~~~v~~~ 394 (394)
+.|.+++.| .+.++|.|
T Consensus 220 h~G~VL~EGsld~v~~dp~ViEvYLG 245 (249)
T COG4674 220 HEGSVLAEGSLDEVQNDPKVIEVYLG 245 (249)
T ss_pred eccceeecccHHHhhcCcceEeeecc
Confidence 999998654 55566654
No 212
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.7e-19 Score=177.95 Aligned_cols=193 Identities=19% Similarity=0.298 Sum_probs=136.2
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
+...++++.|++. +.++.++++++++ .++|+|++|||||||+|.|+|.. .|.++. +.+++.+.....
T Consensus 321 i~~~~l~~~y~~g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~--------~~~~G~--I~vng~~l~~l~ 389 (559)
T COG4988 321 ISLENLSFRYPDG-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL--------APTQGE--IRVNGIDLRDLS 389 (559)
T ss_pred eeecceEEecCCC-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC--------CCCCce--EEECCccccccC
Confidence 3445667788875 3799999999988 99999999999999999999999 344444 344444433322
Q ss_pred ------CceeeeccCCCCCcccccccccchhh-hhhcCCccccccceeec--------------CCCCCc-hhhhhhhcc
Q 016165 250 ------GNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHITLVD--------------TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 250 ------~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~l~D--------------t~g~ls-Ge~qrv~~~ 307 (394)
....+.|.++.|.| +..+|..+.+. ...+...++++..++.| --.-+| ||+||++
T Consensus 390 ~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRla-- 466 (559)
T COG4988 390 PEAWRKQISWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLA-- 466 (559)
T ss_pred HHHHHhHeeeeCCCCccccc-cHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHH--
Confidence 23445666666665 33444422211 11122222223333222 222257 8999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||++..+++++|+ .+|+.+ ...+.+.|.++.+. +++++++ |....+...|+++++++|++
T Consensus 467 -----LARAll~~~~l~llDEpTA~LD~et---E~~i~~~l~~l~~~-ktvl~it-----Hrl~~~~~~D~I~vld~G~l 532 (559)
T COG4988 467 -----LARALLSPASLLLLDEPTAHLDAET---EQIILQALQELAKQ-KTVLVIT-----HRLEDAADADRIVVLDNGRL 532 (559)
T ss_pred -----HHHHhcCCCCEEEecCCccCCCHhH---HHHHHHHHHHHHhC-CeEEEEE-----cChHHHhcCCEEEEecCCce
Confidence 99999999999999 888876 67777888887764 7888888 78888888899999999999
Q ss_pred eecCccceee
Q 016165 383 LNTPEVVRVY 392 (394)
Q Consensus 383 ~~~~~~~~v~ 392 (394)
++.|..++++
T Consensus 533 ~~~g~~~~L~ 542 (559)
T COG4988 533 VEQGTHEELS 542 (559)
T ss_pred eccCCHHHHh
Confidence 9998877664
No 213
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.2e-19 Score=169.97 Aligned_cols=90 Identities=27% Similarity=0.498 Sum_probs=87.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhc
Q 016165 6 GPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD 85 (394)
Q Consensus 6 ~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~ 85 (394)
...|.+|+|+|.||-+.|+.+.+|-.|+|+|..|++||.||.||-..|.+||.|||.++||.|+..|||.|||||-...|
T Consensus 220 d~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkN 299 (737)
T KOG1955|consen 220 DTPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKN 299 (737)
T ss_pred CCccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeeccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCC
Q 016165 86 GHQVTHDLWN 95 (394)
Q Consensus 86 g~~~~~~l~~ 95 (394)
|+++|..||.
T Consensus 300 gypLPe~LP~ 309 (737)
T KOG1955|consen 300 GYPLPESLPH 309 (737)
T ss_pred CCCCCCCCcc
Confidence 9999999987
No 214
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.2e-18 Score=157.33 Aligned_cols=177 Identities=16% Similarity=0.218 Sum_probs=119.4
Q ss_pred eeeeeecC--CcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 176 EVTYRFND--FVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 176 ~~~~~~~~--~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
+++|.|+. ....++++++|++.+ +++|+|+||||||||+++|+|...|. .|..++ +.+.+.+...
T Consensus 8 ~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-----~~~~G~--i~i~g~~~~~~~~~ 80 (202)
T cd03233 8 NISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN-----VSVEGD--IHYNGIPYKEFAEK 80 (202)
T ss_pred ccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCC-----CCcceE--EEECCEECccchhh
Confidence 34556643 235699999999887 99999999999999999999998410 033333 3333332211
Q ss_pred -cCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEE
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllL 325 (394)
.....+..+....+.+.+...+..+.. .......+..+| ||+||+. +|++++.+|+++|
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~------------~~~~~~~~~~LS~Ge~qrl~-------laral~~~p~lll 141 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFAL------------RCKGNEFVRGISGGERKRVS-------IAEALVSRASVLC 141 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhh------------hhccccchhhCCHHHHHHHH-------HHHHHhhCCCEEE
Confidence 112344455444444444444331110 001223567788 9999999 9999999999999
Q ss_pred E-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 326 L-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 326 l-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+ .+|+.. ...+.++++++.++ +.++++++| |+.+++.+. ++++++++|+++..
T Consensus 142 lDEPt~~LD~~~---~~~~~~~l~~~~~~~~~t~ii~~~----h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 142 WDNSTRGLDSST---ALEILKCIRTMADVLKTTTFVSLY----QASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred EcCCCccCCHHH---HHHHHHHHHHHHHhCCCEEEEEEc----CCHHHHHHhCCeEEEEECCEEEec
Confidence 9 888876 78888999988765 556666664 555666665 99999999998754
No 215
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.9e-19 Score=181.42 Aligned_cols=191 Identities=12% Similarity=0.100 Sum_probs=132.5
Q ss_pred eeeeeecC-CcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 176 EVTYRFND-FVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 176 ~~~~~~~~-~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
++++.|+. ....++++++|++.. +++|+|+||||||||+++|+|...| |..++ +.+.+++...
T Consensus 264 ~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-------~~~G~--i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 264 NLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-------RWEGE--IFIDGKPVKIRNPQQ 334 (506)
T ss_pred cCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-------CCCcE--EEECCEECCCCCHHH
Confidence 44455631 114589999998887 9999999999999999999999831 23333 2222222110
Q ss_pred --cCCceeeeccC---CCCCcccccccccc------------hhhhhhcCCccccccceee-c----CCCCCc-hhhhhh
Q 016165 248 --IPGNTVAVQAD---MPFSGLTTFGTAFL------------SKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRT 304 (394)
Q Consensus 248 --~~~~~~~~~~~---~~~~g~~~~~~~~~------------~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv 304 (394)
..+..++++.. ..+.+++...+..+ ......+.+.++++.+++. + .++.+| ||+||+
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 11234444442 12333333333211 1112233456777888774 2 578999 999999
Q ss_pred hcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS 378 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~ 378 (394)
. +|++++.+|+++|+ .+|+.. ...+.++++.+++++.+||+++ |+.+++..+ |++++++
T Consensus 415 ~-------lA~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tvi~~s-----Hd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 415 V-------LAKCLLLNPKILILDEPTRGIDVGA---KYEIYKLINQLVQQGVAIIVIS-----SELPEVLGLSDRVLVMH 479 (506)
T ss_pred H-------HHHHHhhCCCEEEEcCCCCCcCHhH---HHHHHHHHHHHHHCCCEEEEEC-----CCHHHHHHhCCEEEEEE
Confidence 9 99999999999999 899877 8888999999987788888888 888888886 9999999
Q ss_pred cceeeecCccce
Q 016165 379 LGKVLNTPEVVR 390 (394)
Q Consensus 379 ~G~i~~~~~~~~ 390 (394)
+|+++..++..+
T Consensus 480 ~G~i~~~~~~~~ 491 (506)
T PRK13549 480 EGKLKGDLINHN 491 (506)
T ss_pred CCEEEEEecccc
Confidence 999987665544
No 216
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.2e-19 Score=166.38 Aligned_cols=196 Identities=19% Similarity=0.287 Sum_probs=130.6
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc----
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---- 246 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---- 246 (394)
..-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... .....|..++ +.+.+.+..
T Consensus 26 ~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~--i~~~g~~~~~~~~ 98 (271)
T PRK14238 26 DTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE---LVPSVKTTGK--ILYRDQNIFDKSY 98 (271)
T ss_pred EEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---CCCCCCCcee--EEECCEEcccccc
Confidence 33455667776 5699999999887 999999999999999999999873 0000133333 233332211
Q ss_pred ---c-cCCceeeeccCCCCCcccccccccchh-------h-hhhcCCcccccccee--------ecCCCCCc-hhhhhhh
Q 016165 247 ---S-IPGNTVAVQADMPFSGLTTFGTAFLSK-------F-ECSQMPHSLLEHITL--------VDTPGVLS-GEKQRTQ 305 (394)
Q Consensus 247 ---~-~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~-~~~~~~~~~l~~~~l--------~Dt~g~ls-Ge~qrv~ 305 (394)
. .....+.++....+.. +..++..+.. . ...+.+.++++.+++ ...++.+| ||+||+.
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred cHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 0 1234455555444432 4444432110 0 011122333333321 12677889 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL 379 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~ 379 (394)
+|++++.+|+++|+ .+|+.. ...+.++|+.+.+ +.++|+++ |+.+.+..+ ++++++++
T Consensus 178 -------laraL~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiiivs-----H~~~~i~~~~d~i~~l~~ 241 (271)
T PRK14238 178 -------IARCLAIEPDVILMDEPTSALDPIS---TLKVEELVQELKK-DYSIIIVT-----HNMQQAARISDKTAFFLN 241 (271)
T ss_pred -------HHHHHHcCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHc-CCEEEEEE-----cCHHHHHHhCCEEEEEEC
Confidence 99999999999999 888876 7788888988865 57777777 888888776 99999999
Q ss_pred ceeeecCccceee
Q 016165 380 GKVLNTPEVVRVY 392 (394)
Q Consensus 380 G~i~~~~~~~~v~ 392 (394)
|+++..+...+++
T Consensus 242 G~i~~~g~~~~~~ 254 (271)
T PRK14238 242 GYVNEYDDTDKIF 254 (271)
T ss_pred CEEEEeCCHHHHH
Confidence 9998877665543
No 217
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.77 E-value=8.2e-19 Score=166.43 Aligned_cols=202 Identities=19% Similarity=0.290 Sum_probs=152.9
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc--
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-- 247 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-- 247 (394)
++++.+.|...+....++++++|++.. .+|+||++|||||-..+.++++.. .-+.....+ .+.+.|.+.-.
T Consensus 9 v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp---~~~~~~~sg--~i~f~G~dll~~s 83 (534)
T COG4172 9 IRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP---SPAAAHPSG--SILFDGEDLLAAS 83 (534)
T ss_pred eeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcC---CCcccCccc--eeEEcChhhhcCC
Confidence 567777777666667899999999887 999999999999999999999884 111111112 24555554322
Q ss_pred ------cCCc--eeeeccCCC-CCccccccccc---------chhhhhhcCCccccccceeec-------CCCCCc-hhh
Q 016165 248 ------IPGN--TVAVQADMP-FSGLTTFGTAF---------LSKFECSQMPHSLLEHITLVD-------TPGVLS-GEK 301 (394)
Q Consensus 248 ------~~~~--~~~~~~~~~-~~g~~~~~~~~---------~~~~~~~~~~~~~l~~~~l~D-------t~g~ls-Ge~ 301 (394)
+.|. +..+|++.. ++-+...+... +.+...++++.++|+.++|-+ .|..+| ||+
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 2333 336666543 23222222211 223356777888899998866 799999 899
Q ss_pred hhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhH
Q 016165 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGA 374 (394)
Q Consensus 302 qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~ 374 (394)
|||. ||.|++.+||++|. .+|.+- +.+++++++.|+++ |+.+++|+ ||...+.++ |++
T Consensus 164 QRVM-------IAMALan~P~lLIADEPTTALDVtv---QaQIL~Ll~~Lq~~~gMa~lfIT-----HDL~iVr~~ADrV 228 (534)
T COG4172 164 QRVM-------IAMALANEPDLLIADEPTTALDVTV---QAQILDLLKELQAELGMAILFIT-----HDLGIVRKFADRV 228 (534)
T ss_pred hHHH-------HHHHHcCCCCeEeecCCcchhhhhh---HHHHHHHHHHHHHHhCcEEEEEe-----ccHHHHHHhhhhE
Confidence 9999 99999999999999 888876 99999999999765 88999999 888899888 999
Q ss_pred hhhccceeeecCccceeec
Q 016165 375 LMWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 375 ~~~~~G~i~~~~~~~~v~~ 393 (394)
++|..|++++.+.+..+|.
T Consensus 229 ~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 229 YVMQHGEIVETGTTETLFA 247 (534)
T ss_pred EEEeccEEeecCcHHHHhh
Confidence 9999999999998887764
No 218
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.77 E-value=3.5e-19 Score=166.06 Aligned_cols=183 Identities=20% Similarity=0.168 Sum_probs=121.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCce
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNT 252 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~ 252 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++. .+.+. ....
T Consensus 8 ~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--------p~~G~i--~~~~~-----~~i~ 70 (251)
T PRK09544 8 ENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--------PDEGVI--KRNGK-----LRIG 70 (251)
T ss_pred eceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCceEE--EECCc-----cCEE
Confidence 345667766 5699999999887 999999999999999999999983 333331 11110 0122
Q ss_pred eeeccCCCCCcc--cccccccchhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEE
Q 016165 253 VAVQADMPFSGL--TTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (394)
Q Consensus 253 ~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllL 325 (394)
+.++....+..+ +...+.........+.+.++++.+++.+ .+..+| ||+||+. +|++++.+|+++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~-------laral~~~p~lll 143 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVL-------LARALLNRPQLLV 143 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 222322111111 1111110000001122345566666643 578889 9999999 9999999999999
Q ss_pred E-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 326 L-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 326 l-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
+ .+|+.. ...+.++|+++.++ +.++|+++ |+.+.+... +++++++. +++..++..+
T Consensus 144 LDEPt~~LD~~~---~~~l~~~L~~~~~~~g~tiiivs-----H~~~~i~~~~d~i~~l~~-~i~~~g~~~~ 206 (251)
T PRK09544 144 LDEPTQGVDVNG---QVALYDLIDQLRRELDCAVLMVS-----HDLHLVMAKTDEVLCLNH-HICCSGTPEV 206 (251)
T ss_pred EeCCCcCCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHHhCCEEEEECC-ceEeeCCHHH
Confidence 9 888766 77888888888665 77888888 888888776 88888864 6776665543
No 219
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.77 E-value=7e-19 Score=164.29 Aligned_cols=190 Identities=16% Similarity=0.193 Sum_probs=125.3
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... . .|..++ +.+.+.+....
T Consensus 11 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--~----~~~~G~--i~~~g~~~~~~~~~~ 80 (252)
T CHL00131 11 KNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA--Y----KILEGD--ILFKGESILDLEPEE 80 (252)
T ss_pred EeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc--C----cCCCce--EEECCEEcccCChhh
Confidence 355667765 4699999999887 999999999999999999999731 0 122222 22222221110
Q ss_pred -C--CceeeeccCCCCCcccccccccch--------------hhhhhcCCccccccceee----c-CCC-CCc-hhhhhh
Q 016165 249 -P--GNTVAVQADMPFSGLTTFGTAFLS--------------KFECSQMPHSLLEHITLV----D-TPG-VLS-GEKQRT 304 (394)
Q Consensus 249 -~--~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~----D-t~g-~ls-Ge~qrv 304 (394)
. +..+..+....+.+.+...+.... ..+..+.+.++++.+++. + .++ .+| ||+||+
T Consensus 81 ~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 160 (252)
T CHL00131 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN 160 (252)
T ss_pred hheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHH
Confidence 0 122233433333333322221100 001122334566666664 2 455 489 999999
Q ss_pred hcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHH--HHhHhhh
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMR--VYGALMW 377 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~--~~~~~~~ 377 (394)
. +|++++.+|+++|+ .+|... ...+.++++++.+.+.++|+++ |+.+.+.. .++++++
T Consensus 161 ~-------la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~g~tii~~t-----H~~~~~~~~~~d~i~~l 225 (252)
T CHL00131 161 E-------ILQMALLDSELAILDETDSGLDIDA---LKIIAEGINKLMTSENSIILIT-----HYQRLLDYIKPDYVHVM 225 (252)
T ss_pred H-------HHHHHHcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----cCHHHHHhhhCCEEEEE
Confidence 9 99999999999999 788776 7788889988876678888888 77777765 3889999
Q ss_pred ccceeeecCccc
Q 016165 378 SLGKVLNTPEVV 389 (394)
Q Consensus 378 ~~G~i~~~~~~~ 389 (394)
++|+++..+++.
T Consensus 226 ~~G~i~~~~~~~ 237 (252)
T CHL00131 226 QNGKIIKTGDAE 237 (252)
T ss_pred eCCEEEEecChh
Confidence 999998877654
No 220
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.1e-19 Score=167.52 Aligned_cols=194 Identities=18% Similarity=0.267 Sum_probs=129.8
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR----- 246 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~----- 246 (394)
.-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... +....|..+. +.+.+++..
T Consensus 42 i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~~~p~~G~--I~i~G~~i~~~~~~ 114 (285)
T PRK14254 42 ARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMND---LIDAARVEGE--LTFRGKNVYDADVD 114 (285)
T ss_pred EEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceE--EEECCEEccccccc
Confidence 3455667766 5699999999887 999999999999999999999973 1000123333 233332211
Q ss_pred ---ccCCceeeeccCCCCCcccccccccch------hhhhhcCCccccccceee-------c-CCCCCc-hhhhhhhccc
Q 016165 247 ---SIPGNTVAVQADMPFSGLTTFGTAFLS------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 247 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~~ 308 (394)
......++++....+.. +...+..+. .....+.+.++++.+++. + .++.+| ||+||+.
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~--- 190 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC--- 190 (285)
T ss_pred hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH---
Confidence 11234445555443433 433333211 011223345556666542 2 578889 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHh-hhccce
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGAL-MWSLGK 381 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~-~~~~G~ 381 (394)
+|++++.+|+++|+ .+|... ...+.++|+.+.++ .++|+++ |+.+.+..+ ++++ ++++|+
T Consensus 191 ----LAraL~~~p~lLLLDEPts~LD~~~---~~~l~~~L~~~~~~-~tiii~t-----H~~~~i~~~~dri~v~l~~G~ 257 (285)
T PRK14254 191 ----IARAIAPDPEVILMDEPASALDPVA---TSKIEDLIEELAEE-YTVVIVT-----HNMQQAARISDKTAVFLTGGE 257 (285)
T ss_pred ----HHHHHHcCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHhcC-CEEEEEe-----CCHHHHHhhcCEEEEEeeCCE
Confidence 99999999999999 888876 77888999888764 6677777 888888776 7754 579999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..+...++
T Consensus 258 i~~~g~~~~~ 267 (285)
T PRK14254 258 LVEFDDTDKI 267 (285)
T ss_pred EEEeCCHHHH
Confidence 9877665443
No 221
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.8e-19 Score=166.99 Aligned_cols=194 Identities=20% Similarity=0.279 Sum_probs=128.3
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...+ ....|..++ +.+.+.+..
T Consensus 17 ~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~~~p~~G~--v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 17 QNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL---IEGCSLKGR--VLFDGTDLYDPRVDP 89 (269)
T ss_pred EeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---cCCCCCceE--EEECCEEcccccCCH
Confidence 455667776 5699999999887 9999999999999999999998731 011133333 223332211
Q ss_pred -c-cCCceeeeccCCCCCcccccccccchh------hhhhcCCcccccccee-------ec-CCCCCc-hhhhhhhcccC
Q 016165 247 -S-IPGNTVAVQADMPFSGLTTFGTAFLSK------FECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 247 -~-~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv~~~~~ 309 (394)
. .....++++....+.. +...+..+.. ....+.+.++++.+++ .| .+..+| ||+||+.
T Consensus 90 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~---- 164 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLC---- 164 (269)
T ss_pred HHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHH----
Confidence 0 1134444554433332 3333331110 0111223334444443 22 567788 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc----
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL---- 379 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~---- 379 (394)
+||+++.+|+++|+ .+|+.. ...+.++|+++++ +.++|+++ |+.+.+..+ ++++++++
T Consensus 165 ---laral~~~p~lllLDEPt~gLD~~~---~~~l~~~l~~~~~-~~tiiivt-----H~~~~~~~~~d~i~~l~~~~~~ 232 (269)
T PRK14259 165 ---IARTIAIEPEVILMDEPCSALDPIS---TLKIEETMHELKK-NFTIVIVT-----HNMQQAVRVSDMTAFFNAEEVE 232 (269)
T ss_pred ---HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CCEEEEEe-----CCHHHHHHhcCEEEEEeccccc
Confidence 99999999999999 888876 7788889988854 56777777 888888777 99999985
Q ss_pred -------ceeeecCccceee
Q 016165 380 -------GKVLNTPEVVRVY 392 (394)
Q Consensus 380 -------G~i~~~~~~~~v~ 392 (394)
|++++.+++.+++
T Consensus 233 ~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 233 GGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred cccccccceEEEeCCHHHHH
Confidence 5678777665553
No 222
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.77 E-value=3.9e-19 Score=163.79 Aligned_cols=184 Identities=17% Similarity=0.219 Sum_probs=124.7
Q ss_pred ccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----CCceeeeccCC-C
Q 016165 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----PGNTVAVQADM-P 260 (394)
Q Consensus 188 ~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----~~~~~~~~~~~-~ 260 (394)
++++++|++.+ +++|+|+||||||||+++|+|...| .. .|..++ +.+.+.+.... ....++.+... .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~--~~~~G~--i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 74 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPP--GL--TQTSGE--ILLDGRPLLPLSIRGRHIATIMQNPRTA 74 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--cc--CccccE--EEECCEechhhhhhhheeEEEecCchhh
Confidence 46778888776 9999999999999999999999841 00 013343 33334332111 23444555432 1
Q ss_pred C-Cccccccccc-----c--hhhhhhcCCccccccceee------c-CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEE
Q 016165 261 F-SGLTTFGTAF-----L--SKFECSQMPHSLLEHITLV------D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (394)
Q Consensus 261 ~-~g~~~~~~~~-----~--~~~~~~~~~~~~l~~~~l~------D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dll 324 (394)
+ ...+...+.. . ......+.+.++++.+++. + .++.+| ||+||+. +||+++.+|+++
T Consensus 75 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~-------laral~~~p~vl 147 (230)
T TIGR02770 75 FNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVM-------IALALLLEPPFL 147 (230)
T ss_pred cCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHH-------HHHHHhcCCCEE
Confidence 2 1222222210 0 0112233456677777775 2 567788 9999999 999999999999
Q ss_pred EE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceee
Q 016165 325 LL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 325 Ll-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~ 392 (394)
|+ ++|+.. ...+.++++++.++ +.++|+++ |+.+++..+ ++++++++|+++..++..+++
T Consensus 148 lLDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiii~s-----H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 148 IADEPTTDLDVVN---QARVLKLLRELRQLFGTGILLIT-----HDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEcCCccccCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99 888876 77788889888764 67788887 888888776 999999999998877665543
No 223
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.77 E-value=6.2e-19 Score=175.90 Aligned_cols=183 Identities=18% Similarity=0.213 Sum_probs=132.3
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc--------cCCceeee
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--------IPGNTVAV 255 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--------~~~~~~~~ 255 (394)
..+++++||++.+ +++|||++|||||||.++|+|+..| ..+. +.+.+.+... ....-.++
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--------~~G~--i~~~g~~~~~~~~~~~~~r~~~QmvF 373 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--------SSGS--IIFDGQDLDLTGGELRRLRRRIQMVF 373 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--------CCce--EEEeCcccccccchhhhhhhheEEEE
Confidence 4689999999887 9999999999999999999999953 2222 2233322000 00111233
Q ss_pred ccCCC-CC-ccccccccc--------chhhhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 256 QADMP-FS-GLTTFGTAF--------LSKFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 256 ~~~~~-~~-g~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
|+.+. ++ ..+.....- ....+..+++.++++.+++.. .|..+| ||+||++ |||+++.
T Consensus 374 Qdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRva-------IARALa~ 446 (539)
T COG1123 374 QDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA-------IARALAL 446 (539)
T ss_pred eCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHH-------HHHHHhc
Confidence 33221 11 111111100 011234456777788887754 899999 8999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceee
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~ 392 (394)
+|+++++ .+|++. +.++.++|.+++++ |.+.++|. ||...+..+ |++.+|+.|++++.|+...+|
T Consensus 447 ~P~lli~DEp~SaLDvsv---qa~VlnLl~~lq~e~g~t~lfIS-----HDl~vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 447 EPKLLILDEPVSALDVSV---QAQVLNLLKDLQEELGLTYLFIS-----HDLAVVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred CCCEEEecCCccccCHHH---HHHHHHHHHHHHHHhCCEEEEEe-----CCHHHHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 9999999 888876 89999999999875 88999999 888899888 999999999999999777766
Q ss_pred c
Q 016165 393 I 393 (394)
Q Consensus 393 ~ 393 (394)
.
T Consensus 519 ~ 519 (539)
T COG1123 519 E 519 (539)
T ss_pred c
Confidence 3
No 224
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.77 E-value=5.7e-19 Score=165.12 Aligned_cols=193 Identities=18% Similarity=0.183 Sum_probs=129.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc---cc-
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---SI- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---~~- 248 (394)
-++++.| + ..++++++|++.+ +++|+|+||||||||+++|+|...| .. .|..++ +.+.+.+.. ..
T Consensus 8 ~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~--~~~~G~--i~~~g~~i~~~~~~~ 78 (254)
T PRK10418 8 RNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPA--GV--RQTAGR--VLLDGKPVAPCALRG 78 (254)
T ss_pred eCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CC--CCcCCE--EEECCeecccccccc
Confidence 3455566 3 4689999999887 9999999999999999999999841 00 113333 233333221 11
Q ss_pred CCceeeeccCC-CCCc-cccccccc-----chhhhhhcCCccccccceeec-------CCCCCc-hhhhhhhcccChHHH
Q 016165 249 PGNTVAVQADM-PFSG-LTTFGTAF-----LSKFECSQMPHSLLEHITLVD-------TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 249 ~~~~~~~~~~~-~~~g-~~~~~~~~-----~~~~~~~~~~~~~l~~~~l~D-------t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
....++++... .+.. .+...+.. .......+.+.++++.+++.+ .++.+| ||+||+. +
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~-------l 151 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMM-------I 151 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHH-------H
Confidence 23444555432 1211 11111110 000111233455666776642 467888 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
||+++.+|+++|+ ++|... ...+.++++.+.++ +.++++++ |+.+.+..+ ++++++++|+++..+
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~---~~~l~~~L~~~~~~~g~til~~s-----H~~~~~~~~~d~v~~l~~G~i~~~~ 223 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVA---QARILDLLESIVQKRALGMLLVT-----HDMGVVARLADDVAVMSHGRIVEQG 223 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHH---HHHHHHHHHHHHHhcCcEEEEEe-----cCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999 788765 77888889888654 77888888 888888776 999999999998877
Q ss_pred cccee
Q 016165 387 EVVRV 391 (394)
Q Consensus 387 ~~~~v 391 (394)
+..++
T Consensus 224 ~~~~~ 228 (254)
T PRK10418 224 DVETL 228 (254)
T ss_pred CHHHH
Confidence 65544
No 225
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.9e-19 Score=166.31 Aligned_cols=195 Identities=16% Similarity=0.243 Sum_probs=129.6
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR----- 246 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~----- 246 (394)
.-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...+ .. ..|..++ +.+.+++..
T Consensus 23 ~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~--~~-~~~~~G~--i~~~g~~l~~~~~~ 95 (274)
T PRK14265 23 VEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDL--IP-GAKVEGR--LLYRDRNIYDSQIN 95 (274)
T ss_pred EeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccccc--cc-CCCcCce--EEECCEecccccch
Confidence 3455667776 5699999999887 9999999999999999999998731 00 0012333 333333221
Q ss_pred ---ccCCceeeeccCCCCCcccccccccchh----h--hhhcCCcccccccee-------ec-CCCCCc-hhhhhhhccc
Q 016165 247 ---SIPGNTVAVQADMPFSGLTTFGTAFLSK----F--ECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 247 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~--~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv~~~~ 308 (394)
...+..+.++....+.. +...+..... . ...+...++++.+++ .+ .+..+| ||+||+.
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~--- 171 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC--- 171 (274)
T ss_pred hHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH---
Confidence 01234445555443332 3333332110 0 011112233444433 22 567788 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc----
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS---- 378 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~---- 378 (394)
+||+++.+|+++|+ .+|+.. ...+.++|..+.+ +.++|+++ |+.+.+..+ +++++++
T Consensus 172 ----LAraL~~~p~lllLDEPt~~LD~~~---~~~l~~~L~~~~~-~~tiii~s-----H~~~~~~~~~d~i~~l~~~~~ 238 (274)
T PRK14265 172 ----IARAIAMKPDVLLMDEPCSALDPIS---TRQVEELCLELKE-QYTIIMVT-----HNMQQASRVADWTAFFNTEID 238 (274)
T ss_pred ----HHHHHhhCCCEEEEeCCcccCCHHH---HHHHHHHHHHHhc-CCEEEEEe-----CCHHHHHHhCCEEEEEecccc
Confidence 99999999999999 888876 7888899988865 56777777 888888877 9999997
Q ss_pred -----cceeeecCccceee
Q 016165 379 -----LGKVLNTPEVVRVY 392 (394)
Q Consensus 379 -----~G~i~~~~~~~~v~ 392 (394)
+|+++..+++.+++
T Consensus 239 ~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 239 EYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred cccccCceEEEeCCHHHHH
Confidence 79999887776554
No 226
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.77 E-value=6.5e-19 Score=165.97 Aligned_cols=181 Identities=21% Similarity=0.234 Sum_probs=126.1
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---------cCCceee
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---------IPGNTVA 254 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---------~~~~~~~ 254 (394)
+.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .....++
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~sG~--i~~~g~~~~~~~~~~~~~~~~~i~~v 94 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--------PSQGN--VSWRGEPLAKLNRAQRKAFRRDIQMV 94 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEeccccChhHHHHHHhcEEEE
Confidence 4689999999887 999999999999999999999883 33333 2233322111 1234444
Q ss_pred eccCC-CC-Ccccccccccc--------hhhhhhcCCccccccceee----c-CCCCCc-hhhhhhhcccChHHHHHHHh
Q 016165 255 VQADM-PF-SGLTTFGTAFL--------SKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (394)
Q Consensus 255 ~~~~~-~~-~g~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~----D-t~g~ls-Ge~qrv~~~~~~~~iaral~ 318 (394)
++... .+ ...+...+... ...+....+.++++.+++. + .++.+| ||+||+. +|++++
T Consensus 95 ~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~-------laral~ 167 (268)
T PRK10419 95 FQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC-------LARALA 167 (268)
T ss_pred EcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH-------HHHHHh
Confidence 44431 11 12222222110 0112223455666666663 2 677788 9999999 999999
Q ss_pred hcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 319 ~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
.+|+++|+ .+|+.. ...+.++++.+.++ +.++|+++ |+.+.+..+ ++++.+.+|+++..++..++
T Consensus 168 ~~p~lllLDEPt~~LD~~~---~~~~~~~l~~~~~~~~~tiiivs-----H~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 168 VEPKLLILDEAVSNLDLVL---QAGVIRLLKKLQQQFGTACLFIT-----HDLRLVERFCQRVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred cCCCEEEEeCCCcccCHHH---HHHHHHHHHHHHHHcCcEEEEEE-----CCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence 99999999 788766 77888999888764 77888888 888888876 99999999999887776654
No 227
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.8e-19 Score=165.80 Aligned_cols=195 Identities=17% Similarity=0.230 Sum_probs=131.4
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--- 247 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--- 247 (394)
.--++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... .....|..++ +.+.+.+...
T Consensus 27 ~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~--i~i~g~~i~~~~~ 99 (272)
T PRK14236 27 EVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMND---LVDNCRIEGE--IRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC---CccCCCCceE--EEECCEECccccc
Confidence 33456677765 5689999999887 999999999999999999999873 1000123343 2233322210
Q ss_pred -----cCCceeeeccCCCCCcccccccccch-h-------hhhhcCCccccccceee-------c-CCCCCc-hhhhhhh
Q 016165 248 -----IPGNTVAVQADMPFSGLTTFGTAFLS-K-------FECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQ 305 (394)
Q Consensus 248 -----~~~~~~~~~~~~~~~g~~~~~~~~~~-~-------~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~ 305 (394)
.....+.++....+.+ +...+..+. . ....+.+.++++.+++. + .+..+| ||+||+.
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 1234455555444443 444443211 0 01112234445555442 2 567788 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL 379 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~ 379 (394)
+||+++.+|+++|+ ++|+.. ...+.+++.++.+ +.++|+++ |+.+.+... ++++++++
T Consensus 179 -------laral~~~p~lllLDEPt~gLD~~~---~~~l~~~L~~~~~-~~tiiivt-----H~~~~~~~~~d~i~~l~~ 242 (272)
T PRK14236 179 -------IARAIAIEPEVLLLDEPTSALDPIS---TLKIEELITELKS-KYTIVIVT-----HNMQQAARVSDYTAFMYM 242 (272)
T ss_pred -------HHHHHHCCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHh-CCeEEEEe-----CCHHHHHhhCCEEEEEEC
Confidence 99999999999999 888876 7788889988865 56777777 888887776 99999999
Q ss_pred ceeeecCcccee
Q 016165 380 GKVLNTPEVVRV 391 (394)
Q Consensus 380 G~i~~~~~~~~v 391 (394)
|+++..++..++
T Consensus 243 G~i~~~g~~~~~ 254 (272)
T PRK14236 243 GKLVEYGDTDTL 254 (272)
T ss_pred CEEEecCCHHHH
Confidence 999887765543
No 228
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=9.8e-19 Score=163.74 Aligned_cols=198 Identities=21% Similarity=0.251 Sum_probs=133.6
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc---
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--- 246 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--- 246 (394)
+..-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| ..+.....++ +.+.+.+..
T Consensus 11 i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~--~~G~v~~~G~--~~~~g~~~~~~~ 84 (257)
T PRK14246 11 FNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI--YDSKIKVDGK--VLYFGKDIFQID 84 (257)
T ss_pred eeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CcCceeEcCE--EEECCcccccCC
Confidence 333455667776 6699999999887 9999999999999999999999842 1111111111 222222211
Q ss_pred ---ccCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceee-------c-CCCCCc-hhhhhhhc
Q 016165 247 ---SIPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQR 306 (394)
Q Consensus 247 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~ 306 (394)
......+..+....+.+.+..++..+. ..+..+.+.++++.+++. + .++.+| ||+||+.
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~- 163 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLT- 163 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHH-
Confidence 112344555555445555554444211 111223345555555552 2 567788 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+||+++.+|+++|+ .+|... ...+.+++.++.. +.++|+++ |+.+.+... ++++++++|
T Consensus 164 ------laral~~~P~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiilvs-----h~~~~~~~~~d~v~~l~~g 228 (257)
T PRK14246 164 ------IARALALKPKVLLMDEPTSMIDIVN---SQAIEKLITELKN-EIAIVIVS-----HNPQQVARVADYVAFLYNG 228 (257)
T ss_pred ------HHHHHHcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CcEEEEEE-----CCHHHHHHhCCEEEEEECC
Confidence 99999999999999 888876 7788888888864 57778887 788888665 999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..+...++
T Consensus 229 ~i~~~g~~~~~ 239 (257)
T PRK14246 229 ELVEWGSSNEI 239 (257)
T ss_pred EEEEECCHHHH
Confidence 99877765544
No 229
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=8.6e-19 Score=163.71 Aligned_cols=195 Identities=20% Similarity=0.300 Sum_probs=129.7
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR----- 246 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~----- 246 (394)
..++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|...+ .+ ..+.+++ +.+.+++..
T Consensus 8 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~--~~~~~G~--i~~~g~~~~~~~~~ 80 (252)
T PRK14255 8 SSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IP--GVTITGN--VSLRGQNIYAPNED 80 (252)
T ss_pred EEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CC--CCCcccE--EEEcCEEccccccc
Confidence 3456667876 5699999999887 9999999999999999999997620 00 0012333 333333221
Q ss_pred ---ccCCceeeeccCCCCCcccccccccchh--------hhhhcCCcccccccee-------ec-CCCCCc-hhhhhhhc
Q 016165 247 ---SIPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQR 306 (394)
Q Consensus 247 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv~~ 306 (394)
......+..+....+. .+...+..+.. ....+.+.+.++.+++ .+ .++.+| ||+||+.
T Consensus 81 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~- 158 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC- 158 (252)
T ss_pred HHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH-
Confidence 0123445555544343 24444332110 0011122233333332 12 678899 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+|++++.+|+++|+ .+|... ...+.++|+++.+ +.++|+++ |+.+.+.++ ++++.+++|
T Consensus 159 ------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tii~vs-----H~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14255 159 ------IARVLAVKPDVILLDEPTSALDPIS---STQIENMLLELRD-QYTIILVT-----HSMHQASRISDKTAFFLTG 223 (252)
T ss_pred ------HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHHh-CCEEEEEE-----CCHHHHHHhCCEEEEEECC
Confidence 99999999999999 888876 7788888888865 46777777 888888776 999999999
Q ss_pred eeeecCccceee
Q 016165 381 KVLNTPEVVRVY 392 (394)
Q Consensus 381 ~i~~~~~~~~v~ 392 (394)
+++..+++.++|
T Consensus 224 ~i~~~~~~~~~~ 235 (252)
T PRK14255 224 NLIEFADTKQMF 235 (252)
T ss_pred EEEEeCCHHHHh
Confidence 998877665544
No 230
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.7e-19 Score=164.80 Aligned_cols=192 Identities=19% Similarity=0.253 Sum_probs=132.0
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-------
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------- 247 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------- 247 (394)
.++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| ..+.|.+++ +.+.+.+...
T Consensus 14 ~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~~~~~~G~--i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 14 DKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDL---VKGFRFEGH--VHFLGQDVYGKGVDPVV 86 (261)
T ss_pred EEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccccc---ccCCCCceE--EEECCEeccccccchHh
Confidence 3556766 5699999999988 9999999999999999999999842 111123443 3344433211
Q ss_pred -cCCceeeeccCCCCCcccccccccchh------hhhhcCCccccccceeec--------CCCCCc-hhhhhhhcccChH
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLSK------FECSQMPHSLLEHITLVD--------TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~~l~D--------t~g~ls-Ge~qrv~~~~~~~ 311 (394)
.....+.++....+ ..+...+..+.. ....+.+.++++.+++.. .++.+| ||+||+.
T Consensus 87 ~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~------ 159 (261)
T PRK14263 87 VRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLC------ 159 (261)
T ss_pred hhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH------
Confidence 12345555555444 344444432111 112233455566655421 456688 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc-------
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS------- 378 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~------- 378 (394)
+||+++.+|+++|+ ++|+.. ...+.++++++.+ +.++|+++ |+.+.+..+ +++++++
T Consensus 160 -laral~~~p~llllDEPtsgLD~~~---~~~l~~~l~~~~~-~~tii~is-----H~~~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 160 -IARAIATEPEVLLLDEPCSALDPIA---TRRVEELMVELKK-DYTIALVT-----HNMQQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred -HHHHHHcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEe-----CCHHHHHHhCCEEEEEeccccccc
Confidence 99999999999999 888876 8888999998864 56777777 888888776 9999995
Q ss_pred -cceeeecCccceee
Q 016165 379 -LGKVLNTPEVVRVY 392 (394)
Q Consensus 379 -~G~i~~~~~~~~v~ 392 (394)
.|+++..++..+++
T Consensus 230 ~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 230 RTGYLVEMGPTAQIF 244 (261)
T ss_pred CCceEEEeCCHHHHH
Confidence 89999877765543
No 231
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=1.3e-18 Score=153.19 Aligned_cols=155 Identities=24% Similarity=0.384 Sum_probs=106.9
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----- 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----- 248 (394)
++++.|++....+++++++++.+ +++|+|+||+|||||+++|+|... |..+. +.+.+.+....
T Consensus 5 ~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 5 NVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--------PTSGR--VRLDGADISQWDPNEL 74 (173)
T ss_pred EEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--------CCCCe--EEECCEEcccCCHHHH
Confidence 45566754223589999998877 999999999999999999999983 33333 22232221110
Q ss_pred -CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 249 -PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 249 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
....+..+....+.+ + +.|.. +| ||+||+. +|++++.+|+++|+
T Consensus 75 ~~~i~~~~q~~~~~~~-t------------------------v~~~l--LS~G~~qrv~-------la~al~~~p~~lll 120 (173)
T cd03246 75 GDHVGYLPQDDELFSG-S------------------------IAENI--LSGGQRQRLG-------LARALYGNPRILVL 120 (173)
T ss_pred HhheEEECCCCccccC-c------------------------HHHHC--cCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 112222222211111 1 11111 88 9999999 99999999999999
Q ss_pred -----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 327 -----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 327 -----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
.+|+.. ...+.++++.+.+++.++++++ |+.+.+..+++++++++|++
T Consensus 121 DEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~s-----h~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 121 DEPNSHLDVEG---ERALNQAIAALKAAGATRIVIA-----HRPETLASADRILVLEDGRV 173 (173)
T ss_pred ECCccccCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHhCCEEEEEECCCC
Confidence 888876 7888899998877678888888 77766643488888888864
No 232
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.7e-19 Score=165.54 Aligned_cols=194 Identities=17% Similarity=0.232 Sum_probs=127.7
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...+ ....|..+. +.+.+.+..
T Consensus 14 ~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~~~~G~--i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 14 ENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDL---IPGFRVEGK--VTFHGKNLYAPDVDP 86 (264)
T ss_pred eeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcc---cCCCCCceE--EEECCEEccccccCh
Confidence 455667766 5689999999887 9999999999999999999998631 000122333 233332211
Q ss_pred -c-cCCceeeeccCCCCCcccccccccchh------hhhhcCCccccccceee-------c-CCCCCc-hhhhhhhcccC
Q 016165 247 -S-IPGNTVAVQADMPFSGLTTFGTAFLSK------FECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 247 -~-~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~~~ 309 (394)
. .....++++....+.. +...+..+.. ....+.+.++++.+++. + .++.+| ||+||+.
T Consensus 87 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~---- 161 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLC---- 161 (264)
T ss_pred HHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHH----
Confidence 0 1123444454333332 3333331110 01111222333443331 2 567788 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc-----
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS----- 378 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~----- 378 (394)
+||+++.+|+++|+ .+|+.. ...+.+++..+.+ +.++|+++ |+.+.+..+ +++++++
T Consensus 162 ---laral~~~p~lllLDEPt~~LD~~~---~~~l~~~L~~~~~-~~tvi~vt-----H~~~~~~~~~d~v~~l~~~~~~ 229 (264)
T PRK14243 162 ---IARAIAVQPEVILMDEPCSALDPIS---TLRIEELMHELKE-QYTIIIVT-----HNMQQAARVSDMTAFFNVELTE 229 (264)
T ss_pred ---HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCEEEEEe-----cCHHHHHHhCCEEEEEeccccc
Confidence 99999999999999 888876 7888899988866 46777777 888888877 8999998
Q ss_pred ----cceeeecCccceee
Q 016165 379 ----LGKVLNTPEVVRVY 392 (394)
Q Consensus 379 ----~G~i~~~~~~~~v~ 392 (394)
.|+++..+...+++
T Consensus 230 ~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 230 GGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred ccccCceEEEeCCHHHHH
Confidence 79998877665553
No 233
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.77 E-value=3.6e-19 Score=188.90 Aligned_cols=191 Identities=18% Similarity=0.245 Sum_probs=133.2
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--+++++|++..+.+++++++++++ +++|+|+||||||||+|+|+|.+ .|..|+ +.+++.+...+
T Consensus 452 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~--------~p~~G~--I~idg~~i~~~~ 521 (686)
T TIGR03797 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE--------TPESGS--VFYDGQDLAGLD 521 (686)
T ss_pred EEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCCE--EEECCEEcCcCC
Confidence 445577888864335699999999987 99999999999999999999999 455555 44555554433
Q ss_pred -----CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceee---------------cCCCCCc-hhhhhhhcc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---------------DTPGVLS-GEKQRTQRA 307 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------------Dt~g~ls-Ge~qrv~~~ 307 (394)
...+++.|+...|.| +..+|..+.+....+...++++..++. +....+| ||+||++
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia-- 598 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL-- 598 (686)
T ss_pred HHHHHhccEEEccCCccCcc-cHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH--
Confidence 246677788877776 444554222111111122222222222 1223467 8999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++++|+++|+ .+|... ...+.+.++.+ ++++|+|+ |..+.+...|+++++++|++
T Consensus 599 -----lARAll~~p~iLiLDEpTS~LD~~t---e~~i~~~L~~~---~~T~IiIt-----Hr~~~i~~~D~Iivl~~G~i 662 (686)
T TIGR03797 599 -----IARALVRKPRILLFDEATSALDNRT---QAIVSESLERL---KVTRIVIA-----HRLSTIRNADRIYVLDAGRV 662 (686)
T ss_pred -----HHHHHhcCCCEEEEeCCccCCCHHH---HHHHHHHHHHh---CCeEEEEe-----cChHHHHcCCEEEEEECCEE
Confidence 99999999999999 677655 55555655554 56888888 77777777799999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
++.|+..++
T Consensus 663 v~~G~~~~L 671 (686)
T TIGR03797 663 VQQGTYDEL 671 (686)
T ss_pred EEECCHHHH
Confidence 988876554
No 234
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.77 E-value=5.6e-19 Score=163.37 Aligned_cols=179 Identities=17% Similarity=0.253 Sum_probs=121.5
Q ss_pred eecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----ccCCce
Q 016165 180 RFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-----SIPGNT 252 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~-----~~~~~~ 252 (394)
+|+. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+.. ......
T Consensus 30 ~~~~--~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~~~i~ 97 (236)
T cd03267 30 KYRE--VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--------PTSGE--VRVAGLVPWKRRKKFLRRIG 97 (236)
T ss_pred ccCC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--------CCceE--EEECCEEccccchhhcccEE
Confidence 4555 5689999999887 999999999999999999999984 33333 222221110 011223
Q ss_pred eee-ccCCCCCcccccccccc-h------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 253 VAV-QADMPFSGLTTFGTAFL-S------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 253 ~~~-~~~~~~~g~~~~~~~~~-~------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
+.+ +....+...+..++..+ . ..+..+.+.++++.+++.+ .++.+| ||+||+. +|++++.
T Consensus 98 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~-------la~al~~ 170 (236)
T cd03267 98 VVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAE-------IAAALLH 170 (236)
T ss_pred EEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHhc
Confidence 332 22222223333333211 0 1112233455666666643 567888 9999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeec
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~ 385 (394)
+|+++|+ .+|+.. ...+.++|+++.++ +.++|+++ |+.+.+..+ ++++.+.+|+++..
T Consensus 171 ~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiiivs-----H~~~~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 171 EPEILFLDEPTIGLDVVA---QENIRNFLKEYNRERGTTVLLTS-----HYMKDIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred CCCEEEEcCCCCCCCHHH---HHHHHHHHHHHHhcCCCEEEEEe-----cCHHHHHHhCCEEEEEeCCEEEec
Confidence 9999999 888876 78888999988654 67778877 888888776 99999999998754
No 235
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7e-19 Score=180.50 Aligned_cols=177 Identities=14% Similarity=0.237 Sum_probs=124.4
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-------cCCceeeecc
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-------IPGNTVAVQA 257 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-------~~~~~~~~~~ 257 (394)
.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... ..+..++++.
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--------p~~G~--I~~~g~~~~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--------RAGGE--IRLNGKDISPRSPLDAVKKGMAYITES 346 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--------CCCCe--EEECCEECCCCCHHHHHHCCcEEccCc
Confidence 389999998887 999999999999999999999984 22333 2222221100 1123333333
Q ss_pred ---CCCCCcccccccccc----------------hhhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHH
Q 016165 258 ---DMPFSGLTTFGTAFL----------------SKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 258 ---~~~~~g~~~~~~~~~----------------~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
...+.+++...+..+ ......+.+.++++.+++. + .++.+| ||+||+.
T Consensus 347 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~------- 419 (510)
T PRK09700 347 RRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL------- 419 (510)
T ss_pred cccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH-------
Confidence 112223333322211 0111223356677777774 3 578899 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
+|++++.+|+++|+ .+|+.. ...+.++|+.+++++.++|+++ |+.+.+..+ ++++++++|+++..+
T Consensus 420 lAral~~~p~lLlLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tvi~vs-----Hd~~~~~~~~d~i~~l~~G~i~~~~ 491 (510)
T PRK09700 420 ISKWLCCCPEVIIFDEPTRGIDVGA---KAEIYKVMRQLADDGKVILMVS-----SELPEIITVCDRIAVFCEGRLTQIL 491 (510)
T ss_pred HHHHHhcCCCEEEECCCCCCcCHHH---HHHHHHHHHHHHHCCCEEEEEc-----CCHHHHHhhCCEEEEEECCEEEEEe
Confidence 99999999999999 899876 8888999999877788888888 888888877 999999999998655
Q ss_pred cc
Q 016165 387 EV 388 (394)
Q Consensus 387 ~~ 388 (394)
..
T Consensus 492 ~~ 493 (510)
T PRK09700 492 TN 493 (510)
T ss_pred cC
Confidence 43
No 236
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.7e-19 Score=160.39 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=127.1
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCC----CcCCCcccc------eeEEEE
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGA----HIGPEPTTD------RFVVVM 240 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~----~vs~~p~t~------r~~i~~ 240 (394)
+.-++++.|++ +.+|++++..+.+ .++|+|+||||||||+++++|...|.. .++...+.+ |..|++
T Consensus 33 ~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~ 110 (257)
T COG1119 33 ELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGL 110 (257)
T ss_pred EecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCc
Confidence 34455668888 8899999999988 999999999999999999999996410 011111111 111111
Q ss_pred ecCcc-cccCCceeeeccCCCCCcccc-ccccc-chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHH
Q 016165 241 SGVDD-RSIPGNTVAVQADMPFSGLTT-FGTAF-LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
.+... ..++... ...++.+.|... .+... ....+....+..+++.+++.+ +-+.+| ||++|+-
T Consensus 111 vS~~L~~~~~~~~--~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvL------- 181 (257)
T COG1119 111 VSSELHERFRVRE--TVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVL------- 181 (257)
T ss_pred cCHHHHhhccccc--ccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHH-------
Confidence 11100 0000000 000111111111 11110 112345666777888887754 668889 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC--CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH--DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~--~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
||||++.+|.++|+ ++|... .+.+.+.+.++... +..+++|+ |..+++..+ .+...++.|+++.
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~---re~ll~~l~~~~~~~~~~~ll~Vt-----Hh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIA---REQLLNRLEELAASPGAPALLFVT-----HHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHH---HHHHHHHHHHHhcCCCCceEEEEE-----cchhhcccccceEEEeeCCceee
Confidence 99999999999999 888876 77788888887654 45677777 667777665 8999999999987
Q ss_pred cCc
Q 016165 385 TPE 387 (394)
Q Consensus 385 ~~~ 387 (394)
.+.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 653
No 237
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.77 E-value=2.7e-18 Score=149.74 Aligned_cols=149 Identities=21% Similarity=0.338 Sum_probs=108.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++ ..++++++|++.+ +++|+|+||+|||||+++|+|.. .|..+. +.+.+.+....+
T Consensus 5 ~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--------~~~~G~--v~~~g~~~~~~~---- 68 (163)
T cd03216 5 GITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY--------KPDSGE--ILVDGKEVSFAS---- 68 (163)
T ss_pred EEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCeE--EEECCEECCcCC----
Confidence 45667776 4699999999888 99999999999999999999998 344444 222222111000
Q ss_pred eeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----E
Q 016165 254 AVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----L 327 (394)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~ 327 (394)
... . .-..+.+.. .+| ||+||+. +||+++.+|+++|+ .
T Consensus 69 ------------~~~--------~------~~~~i~~~~---qLS~G~~qrl~-------laral~~~p~illlDEP~~~ 112 (163)
T cd03216 69 ------------PRD--------A------RRAGIAMVY---QLSVGERQMVE-------IARALARNARLLILDEPTAA 112 (163)
T ss_pred ------------HHH--------H------HhcCeEEEE---ecCHHHHHHHH-------HHHHHhcCCCEEEEECCCcC
Confidence 000 0 000122211 188 9999999 99999999999999 7
Q ss_pred eCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 328 FDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 328 lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+|... ...+.++++++.+++.++++++ |+.+.+... ++++.+++|+++.
T Consensus 113 LD~~~---~~~l~~~l~~~~~~~~tiii~s-----h~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 113 LTPAE---VERLFKVIRRLRAQGVAVIFIS-----HRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEe
Confidence 88776 7888899988876677888887 888777776 9999999999864
No 238
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.77 E-value=4.9e-19 Score=184.97 Aligned_cols=193 Identities=20% Similarity=0.330 Sum_probs=140.8
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
++--+++|+|+.....+++|+++++++ +|||+|+||||||||++.|+|.+ .|..|+ +.+++.+...+.
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly--------~p~~G~--I~~dg~dl~~i~ 541 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY--------KPQQGR--ILLDGVDLNDID 541 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCce--EEECCEeHHhcC
Confidence 455677889987645799999999998 99999999999999999999999 677777 555666654443
Q ss_pred ------CceeeeccCCCCCcccccccccchhh-----hhhcC-----Cccccc------cceeecCCCCCc-hhhhhhhc
Q 016165 250 ------GNTVAVQADMPFSGLTTFGTAFLSKF-----ECSQM-----PHSLLE------HITLVDTPGVLS-GEKQRTQR 306 (394)
Q Consensus 250 ------~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~-----~~~~l~------~~~l~Dt~g~ls-Ge~qrv~~ 306 (394)
...++.|+.+.|.|- ..+|..+... +..+. +++... ...+.+-..-+| |||||++
T Consensus 542 ~~~lR~~ig~V~Q~~~Lf~gS-I~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrla- 619 (709)
T COG2274 542 LASLRRQVGYVLQDPFLFSGS-IRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLA- 619 (709)
T ss_pred HHHHHhheeEEcccchhhcCc-HHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHH-
Confidence 566778888888773 3333321111 11110 111111 112233445577 8999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++.+|.++|+ .+|..+ ...+.+-|.++.. ++++|+|+ |...-+..+|++++++.|+
T Consensus 620 ------lARaLl~~P~ILlLDEaTSaLD~~s---E~~I~~~L~~~~~-~~T~I~Ia-----HRl~ti~~adrIiVl~~Gk 684 (709)
T COG2274 620 ------LARALLSKPKILLLDEATSALDPET---EAIILQNLLQILQ-GRTVIIIA-----HRLSTIRSADRIIVLDQGK 684 (709)
T ss_pred ------HHHHhccCCCEEEEeCcccccCHhH---HHHHHHHHHHHhc-CCeEEEEE-----ccchHhhhccEEEEccCCc
Confidence 99999999999999 788765 6667777766654 57888888 7788888889999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..|...++
T Consensus 685 iv~~gs~~el 694 (709)
T COG2274 685 IVEQGSHEEL 694 (709)
T ss_pred eeccCCHHHH
Confidence 9998876654
No 239
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=9.6e-19 Score=161.51 Aligned_cols=189 Identities=17% Similarity=0.246 Sum_probs=121.7
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++....++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 5 ~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 5 NVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--------VDSGR--ILIDGHDVRDYTLASL 74 (234)
T ss_pred EEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--------CCCCE--EEECCEEhhhCCHHHH
Confidence 44556654212589999998877 999999999999999999999984 33333 2222221111
Q ss_pred cCCceeeeccCCCCCcccccccccch-----hhh-----hhcCCccccccc--ee---e-cCCCCCc-hhhhhhhcccCh
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFLS-----KFE-----CSQMPHSLLEHI--TL---V-DTPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~-----~~~~~~~~l~~~--~l---~-Dt~g~ls-Ge~qrv~~~~~~ 310 (394)
.....+..+....+. .+...+..+. ... ......++++.+ ++ . ..+..+| ||+||+.
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~----- 148 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIA----- 148 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHH-----
Confidence 012233333332222 2222222110 000 011122333322 12 2 2577888 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeec
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNT 385 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~ 385 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.+ +.++|+++ |+.+.+..+++++++++|+++..
T Consensus 149 --la~al~~~p~lllLDEP~~~LD~~~---~~~l~~~l~~~~~-~~tii~~s-----h~~~~~~~~d~v~~l~~G~i~~~ 217 (234)
T cd03251 149 --IARALLKDPPILILDEATSALDTES---ERLVQAALERLMK-NRTTFVIA-----HRLSTIENADRIVVLEDGKIVER 217 (234)
T ss_pred --HHHHHhcCCCEEEEeCccccCCHHH---HHHHHHHHHHhcC-CCEEEEEe-----cCHHHHhhCCEEEEecCCeEeee
Confidence 99999999999999 888876 7888899988864 67777777 77777765699999999999877
Q ss_pred Ccccee
Q 016165 386 PEVVRV 391 (394)
Q Consensus 386 ~~~~~v 391 (394)
++..++
T Consensus 218 ~~~~~~ 223 (234)
T cd03251 218 GTHEEL 223 (234)
T ss_pred CCHHHH
Confidence 665443
No 240
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.77 E-value=6.7e-19 Score=161.65 Aligned_cols=175 Identities=20% Similarity=0.262 Sum_probs=119.3
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 12 ~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 12 NVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--------PTSGT--LLFEGEDISTLKPEIY 79 (225)
T ss_pred ccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--------CCCCe--EEECCEEcCcCCHHHH
Confidence 44567765 5699999999987 999999999999999999999873 33333 2223322111
Q ss_pred cCCceeeeccCCCCCcccccccccch-----hhhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFLS-----KFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
.....+.++....+. .+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+. +|++
T Consensus 80 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~-------lara 151 (225)
T PRK10247 80 RQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRIS-------LIRN 151 (225)
T ss_pred HhccEEEeccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHH-------HHHH
Confidence 113344555544333 2433333110 0111233456777777742 577888 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWS 378 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~ 378 (394)
++.+|+++|+ .+|+.. ...+.++++++.++ +.++++++ |+.+.+..+++++.++
T Consensus 152 l~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tvii~s-----h~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESN---KHNVNEIIHRYVREQNIAVLWVT-----HDKDEINHADKVITLQ 211 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEE-----CChHHHHhCCEEEEEe
Confidence 9999999999 888776 77888888888654 77888888 6666665458887774
No 241
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.2e-18 Score=164.05 Aligned_cols=194 Identities=17% Similarity=0.235 Sum_probs=131.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... +....|..++ +.+.+++..
T Consensus 20 ~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~--i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 20 NKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGE--IILHPDNVNILSPEV 92 (265)
T ss_pred EEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccE--EEEcCcccccccccc
Confidence 456667776 5699999999887 999999999999999999999873 1110123333 333332211
Q ss_pred ----ccCCceeeeccCCCCCcccccccccchh--------hhhhcCCccccccceee-------c-CCCCCc-hhhhhhh
Q 016165 247 ----SIPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQ 305 (394)
Q Consensus 247 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~ 305 (394)
...+..+.++....+.+ +..++..+.. ....+...++++.+++. + .++.+| ||+||+.
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred CHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 11234455555444443 4444332110 01112233444444432 2 567788 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL 379 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~ 379 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++.. +.++++++ |+.+++.++ ++++++++
T Consensus 172 -------laral~~~p~llllDEPt~gLD~~~---~~~l~~~l~~l~~-~~tiiivt-----h~~~~~~~~~d~i~~l~~ 235 (265)
T PRK14252 172 -------IARALATDPEILLFDEPTSALDPIA---TASIEELISDLKN-KVTILIVT-----HNMQQAARVSDYTAYMYM 235 (265)
T ss_pred -------HHHHHHcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHh-CCEEEEEe-----cCHHHHHHhCCEEEEEEC
Confidence 99999999999999 888766 7788888988865 56777777 888888776 99999999
Q ss_pred ceeeecCccceee
Q 016165 380 GKVLNTPEVVRVY 392 (394)
Q Consensus 380 G~i~~~~~~~~v~ 392 (394)
|+++..+...+++
T Consensus 236 G~i~~~g~~~~~~ 248 (265)
T PRK14252 236 GELIEFGATDTIF 248 (265)
T ss_pred CEEEEeCCHHHHH
Confidence 9998877665543
No 242
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.2e-19 Score=167.15 Aligned_cols=193 Identities=21% Similarity=0.286 Sum_probs=128.2
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|.... .+ ..|..++ +.+.+++..
T Consensus 43 ~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~-~p--~~~~~G~--I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 43 KNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDL-IP--SCHTTGA--LMFDGEDIYGKFTDE 115 (286)
T ss_pred eeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CC--CCCCceE--EEECCEEhhhcccch
Confidence 355667765 4589999999887 9999999999999999999997520 00 0023333 333332211
Q ss_pred --ccCCceeeeccCCCCCcccccccccchh--------hhhhcCCccccccceee-------c-CCCCCc-hhhhhhhcc
Q 016165 247 --SIPGNTVAVQADMPFSGLTTFGTAFLSK--------FECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 247 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~ 307 (394)
...+..++.+....+.. +...+..+.. ....+.+.++++.+++. + .++.+| ||+||+.
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~-- 192 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC-- 192 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH--
Confidence 01134445555443432 4444332110 01122233444444431 2 567888 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++.. +.++|+++ |+.+.+..+ ++++++++|+
T Consensus 193 -----LAraL~~~p~lllLDEPt~gLD~~~---~~~l~~~L~~~~~-~~tvIivs-----H~~~~~~~~~d~i~~L~~G~ 258 (286)
T PRK14275 193 -----VARTLAVEPEILLLDEPTSALDPKA---TAKIEDLIQELRG-SYTIMIVT-----HNMQQASRVSDYTMFFYEGV 258 (286)
T ss_pred -----HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEe-----CCHHHHHHhCCEEEEEECCE
Confidence 99999999999999 888876 7788888888865 46777777 888888776 9999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..++..++
T Consensus 259 i~~~g~~~~~ 268 (286)
T PRK14275 259 LVEHAPTAQL 268 (286)
T ss_pred EEEeCCHHHH
Confidence 9887765443
No 243
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.76 E-value=6.4e-19 Score=181.52 Aligned_cols=197 Identities=12% Similarity=0.165 Sum_probs=134.6
Q ss_pred ceeeeeecCC--cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---
Q 016165 175 LEVTYRFNDF--VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--- 247 (394)
Q Consensus 175 l~~~~~~~~~--~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--- 247 (394)
-++++.|++. ...++++++|++.. +++|+|+||||||||+++|+|...| ....|..+. +.+.+.+...
T Consensus 9 ~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~---~~~~~~~G~--i~~~g~~i~~~~~ 83 (529)
T PRK15134 9 ENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS---PPVVYPSGD--IRFHGESLLHASE 83 (529)
T ss_pred eceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC---CcCCccceE--EEECCEecccCCH
Confidence 3455677521 13699999999877 9999999999999999999999842 000112333 3333332211
Q ss_pred -----c--CCceeeeccCC--CCCccccccccc--------chhhhhhcCCccccccceeec-------CCCCCc-hhhh
Q 016165 248 -----I--PGNTVAVQADM--PFSGLTTFGTAF--------LSKFECSQMPHSLLEHITLVD-------TPGVLS-GEKQ 302 (394)
Q Consensus 248 -----~--~~~~~~~~~~~--~~~g~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~D-------t~g~ls-Ge~q 302 (394)
. ....+++|... .+...+...+.. ....+..+.+.++++.+++.+ .++.+| ||+|
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 1 13445555432 111222222211 011123455677788888742 688999 9999
Q ss_pred hhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHh
Q 016165 303 RTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGAL 375 (394)
Q Consensus 303 rv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~ 375 (394)
|+. +||+++.+|+++|+ .+|+.. ...+.+++++++++ +.++|+|+ |+.+.+..+ |+++
T Consensus 164 rv~-------iAraL~~~p~llllDEPt~~LD~~~---~~~l~~~l~~l~~~~g~tvi~vt-----Hd~~~~~~~~dri~ 228 (529)
T PRK15134 164 RVM-------IAMALLTRPELLIADEPTTALDVSV---QAQILQLLRELQQELNMGLLFIT-----HNLSIVRKLADRVA 228 (529)
T ss_pred HHH-------HHHHHhcCCCEEEEcCCCCccCHHH---HHHHHHHHHHHHHhcCCeEEEEc-----CcHHHHHHhcCEEE
Confidence 999 99999999999999 888876 88888999998764 78888888 888888776 9999
Q ss_pred hhccceeeecCcccee
Q 016165 376 MWSLGKVLNTPEVVRV 391 (394)
Q Consensus 376 ~~~~G~i~~~~~~~~v 391 (394)
++++|+++..+...++
T Consensus 229 ~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 229 VMQNGRCVEQNRAATL 244 (529)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999877655443
No 244
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.76 E-value=2.5e-18 Score=155.01 Aligned_cols=166 Identities=19% Similarity=0.257 Sum_probs=116.9
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----- 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----- 248 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... ..|..++ +.+++++....
T Consensus 5 ~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~------~~p~~G~--i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 5 DLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK------YEVTEGE--ILFKGEDITDLPPEER 74 (200)
T ss_pred EEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc------CCCCccE--EEECCEECCcCCHHHH
Confidence 45567765 5699999999887 999999999999999999999841 0233444 33344332211
Q ss_pred --CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecC-CCCCc-hhhhhhhcccChHHHHHHHhhcCCEE
Q 016165 249 --PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDT-PGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (394)
Q Consensus 249 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt-~g~ls-Ge~qrv~~~~~~~~iaral~~~~dll 324 (394)
....+.++....+.+.+... +.+. +..+| ||+||+. +||+++.+|+++
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~---------------------~l~~~~~~LS~G~~qrv~-------laral~~~p~il 126 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNAD---------------------FLRYVNEGFSGGEKKRNE-------ILQLLLLEPDLA 126 (200)
T ss_pred hhCcEEEeecChhhccCccHHH---------------------HHhhccccCCHHHHHHHH-------HHHHHhcCCCEE
Confidence 11233333332232221111 1122 35788 9999999 999999999999
Q ss_pred EE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHH-H-HhHhhhccceeeecCc
Q 016165 325 LL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMR-V-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 325 Ll-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~-~-~~~~~~~~G~i~~~~~ 387 (394)
|+ .+|+.. ...+.+++.++.+++.++++++ |+.+.+.. . ++++++++|+++..++
T Consensus 127 llDEPt~~LD~~~---~~~l~~~L~~~~~~~~tiii~s-----h~~~~~~~~~~d~i~~l~~G~i~~~~~ 188 (200)
T cd03217 127 ILDEPDSGLDIDA---LRLVAEVINKLREEGKSVLIIT-----HYQRLLDYIKPDRVHVLYDGRIVKSGD 188 (200)
T ss_pred EEeCCCccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----cCHHHHHHhhCCEEEEEECCEEEEEcc
Confidence 99 788765 7788899988876677888888 77777775 4 9999999999987663
No 245
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.76 E-value=6.3e-19 Score=184.54 Aligned_cols=198 Identities=16% Similarity=0.199 Sum_probs=135.4
Q ss_pred eeeeeecCC--cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEE--------EEecC
Q 016165 176 EVTYRFNDF--VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVV--------VMSGV 243 (394)
Q Consensus 176 ~~~~~~~~~--~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i--------~~~~~ 243 (394)
++++.|+.. ...++++++|++.. +++|+|+||||||||+++|+|...| .++........+ .....
T Consensus 17 ~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p---~~G~i~~~g~~~~~~~~~~~~~~~~ 93 (623)
T PRK10261 17 NLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ---AGGLVQCDKMLLRRRSRQVIELSEQ 93 (623)
T ss_pred ceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC---CCeEEEECCEEeccccccccccccC
Confidence 445566421 13599999999887 9999999999999999999999842 111100000000 00000
Q ss_pred cc---ccc--CCceeeeccC--CCCCcccccccccc--------hhhhhhcCCccccccceee------c-CCCCCc-hh
Q 016165 244 DD---RSI--PGNTVAVQAD--MPFSGLTTFGTAFL--------SKFECSQMPHSLLEHITLV------D-TPGVLS-GE 300 (394)
Q Consensus 244 ~~---~~~--~~~~~~~~~~--~~~~g~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~------D-t~g~ls-Ge 300 (394)
.. ... ....+++|.. ..+..++...+... ...+..+.+.++++.+++. + .+..+| ||
T Consensus 94 ~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq 173 (623)
T PRK10261 94 SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGM 173 (623)
T ss_pred CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHH
Confidence 00 001 1344555553 12333444444321 1123345567788888883 2 788999 99
Q ss_pred hhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-Hh
Q 016165 301 KQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YG 373 (394)
Q Consensus 301 ~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~ 373 (394)
+||+. ||++++.+|+++|+ .+|+.. +.++.++++.+.++ +.++|+|+ |+.+.+..+ ++
T Consensus 174 ~QRv~-------iA~AL~~~P~lLllDEPt~~LD~~~---~~~l~~ll~~l~~~~g~tvi~it-----Hdl~~~~~~adr 238 (623)
T PRK10261 174 RQRVM-------IAMALSCRPAVLIADEPTTALDVTI---QAQILQLIKVLQKEMSMGVIFIT-----HDMGVVAEIADR 238 (623)
T ss_pred HHHHH-------HHHHHhCCCCEEEEeCCCCccCHHH---HHHHHHHHHHHHHhcCCEEEEEc-----CCHHHHHHhCCE
Confidence 99999 99999999999999 899876 88899999999754 78888888 888888887 99
Q ss_pred HhhhccceeeecCcccee
Q 016165 374 ALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 374 ~~~~~~G~i~~~~~~~~v 391 (394)
++++++|+++..+.+.++
T Consensus 239 i~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQI 256 (623)
T ss_pred EEEeeCCeecccCCHHHh
Confidence 999999999987765544
No 246
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.76 E-value=7.3e-19 Score=183.31 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=134.0
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--++++.|++..+.+++++++++++ +++|+|+||||||||+++|+|.. .|..++ +.+++.+...+
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~--------~p~~G~--I~i~g~~i~~~~ 411 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY--------DIDEGE--ILLDGHDLRDYT 411 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc--------CCCCce--EEECCEEhhhcC
Confidence 344466778865335699999999887 99999999999999999999999 455555 44455543332
Q ss_pred -----CCceeeeccCCCCCcccccccccchh--hhhhcCCccccccceee----------cC-----CCCCc-hhhhhhh
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSK--FECSQMPHSLLEHITLV----------DT-----PGVLS-GEKQRTQ 305 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~l~----------Dt-----~g~ls-Ge~qrv~ 305 (394)
....++.|+.+.|++ +..+|..+.+ ....+...++++..++. || ...+| ||+||+.
T Consensus 412 ~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 412 LASLRNQVALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred HHHHHhhceEEccCceeecc-hHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 245667777777765 3444443211 01111122222222211 22 23367 8999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+||+++++|+++|+ .+|..+ ...+.+.+..+.+ ++++|+|+ |+...+..+|+++.+++|
T Consensus 491 -------LARall~~~~ililDEptsaLD~~t---~~~i~~~l~~~~~-~~tvI~Vt-----Hr~~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 491 -------IARALLRDSPILILDEATSALDTES---ERAIQAALDELQK-NRTSLVIA-----HRLSTIEKADEILVVEDG 554 (582)
T ss_pred -------HHHHHHhCCCEEEEECccccCCHHH---HHHHHHHHHHHhC-CCEEEEEe-----cchHHHHhCCEEEEEECC
Confidence 99999999999999 788776 6777777777643 57888888 777777777999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
++++.|...++
T Consensus 555 ~i~e~g~~~~l 565 (582)
T PRK11176 555 EIVERGTHAEL 565 (582)
T ss_pred EEEEeCCHHHH
Confidence 99988765544
No 247
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.1e-18 Score=163.54 Aligned_cols=195 Identities=22% Similarity=0.306 Sum_probs=133.0
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR----- 246 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~----- 246 (394)
--++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...|..+ ....++ +.+.+++..
T Consensus 10 ~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~---~~~~G~--i~~~g~~i~~~~~~ 82 (259)
T PRK14260 10 VKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGP---VKVEGV--VDFFGQNIYDPRIN 82 (259)
T ss_pred EEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccC---CccceE--EEECCEeccccccc
Confidence 3456667876 5699999999887 9999999999999999999998731000 001233 333443221
Q ss_pred ---ccCCceeeeccCCCCCcccccccccch--------hhhhhcCCcccccccee-------ec-CCCCCc-hhhhhhhc
Q 016165 247 ---SIPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQR 306 (394)
Q Consensus 247 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l-------~D-t~g~ls-Ge~qrv~~ 306 (394)
......+.++....+. .+..++..+. .....+.+.++++.+++ .+ .+..+| ||+||+.
T Consensus 83 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~- 160 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC- 160 (259)
T ss_pred hHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH-
Confidence 1124555666654444 4554444211 11122234445555544 22 567788 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc--
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS-- 378 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~-- 378 (394)
+||+++.+|+++|+ .+|+.. ...+.++++.+.+ +.++++++ |+.+.+..+ +++++++
T Consensus 161 ------laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiii~t-----H~~~~i~~~~d~i~~l~~~ 225 (259)
T PRK14260 161 ------IARALAIKPKVLLMDEPCSALDPIA---TMKVEELIHSLRS-ELTIAIVT-----HNMQQATRVSDFTAFFSTD 225 (259)
T ss_pred ------HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CCEEEEEe-----CCHHHHHHhcCeEEEEecc
Confidence 99999999999999 888866 7788889988865 57777777 888888876 9999997
Q ss_pred ---cceeeecCccceee
Q 016165 379 ---LGKVLNTPEVVRVY 392 (394)
Q Consensus 379 ---~G~i~~~~~~~~v~ 392 (394)
+|+++..+++.+++
T Consensus 226 ~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 226 ESRIGQMVEFGVTTQIF 242 (259)
T ss_pred CCCCceEEEeCCHHHHh
Confidence 59998877766543
No 248
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.76 E-value=9.8e-19 Score=179.84 Aligned_cols=192 Identities=19% Similarity=0.212 Sum_probs=132.8
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEE--------E-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVV--------M----- 240 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~--------~----- 240 (394)
++++.|++ +.++++++|++.. +++|+|+||||||||+++|+|... . .|..+...+. +
T Consensus 5 ~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--~----~p~~G~i~~~~~~~~~~~~~~~~~ 76 (520)
T TIGR03269 5 NLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQ--Y----EPTSGRIIYHVALCEKCGYVERPS 76 (520)
T ss_pred EEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc--C----CCCceEEEEecccccccccccccc
Confidence 45667876 5699999998887 999999999999999999999851 0 1222221110 0
Q ss_pred --------ecCcc---------------cc-cCCceeeecc-CCCCCcccccccccch-------hhhhhcCCccccccc
Q 016165 241 --------SGVDD---------------RS-IPGNTVAVQA-DMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHI 288 (394)
Q Consensus 241 --------~~~~~---------------~~-~~~~~~~~~~-~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~ 288 (394)
.+.+. .. .....++++. ...+...+...+..+. ..+..+.+.++++.+
T Consensus 77 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (520)
T TIGR03269 77 KVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV 156 (520)
T ss_pred ccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 00000 00 0123344453 2333344444443211 112334566788888
Q ss_pred eeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEE
Q 016165 289 TLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVL 357 (394)
Q Consensus 289 ~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~ 357 (394)
++.+ .++.+| ||+||+. +|++++.+|+++|+ .+|+.. ...+.++++++.+ .+.+||+|+
T Consensus 157 gl~~~~~~~~~~LSgGq~qrv~-------iA~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 157 QLSHRITHIARDLSGGEKQRVV-------LARQLAKEPFLFLADEPTGTLDPQT---AKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred CChhhhhcCcccCCHHHHHHHH-------HHHHHhcCCCEEEeeCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEe
Confidence 8754 688999 9999999 99999999999999 899877 8888899998865 478888888
Q ss_pred ecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 358 NKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 358 nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
|+.+.+..+ ++++.+++|+++..+...+
T Consensus 227 -----Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 255 (520)
T TIGR03269 227 -----HWPEVIEDLSDKAIWLENGEIKEEGTPDE 255 (520)
T ss_pred -----CCHHHHHHhcCEEEEEeCCEEeeecCHHH
Confidence 888888776 9999999999987665443
No 249
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.76 E-value=9e-19 Score=180.42 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=130.5
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---------cCCceee
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---------IPGNTVA 254 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---------~~~~~~~ 254 (394)
..++++++|++.. +++|+|+||||||||+++|+|... ..+. +.+.+.+... .....++
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---------~~G~--i~~~g~~i~~~~~~~~~~~~~~i~~v 367 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---------SQGE--IWFDGQPLHNLNRRQLLPVRHRIQVV 367 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---------CCcE--EEECCEEccccchhhHHHhhhceEEE
Confidence 4589999999887 999999999999999999999872 1222 2233322111 1124455
Q ss_pred eccC--CCCCcccccccccch---------hhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 255 VQAD--MPFSGLTTFGTAFLS---------KFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 255 ~~~~--~~~~g~~~~~~~~~~---------~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
++.. ..+...+...+..+. ..+..+.+.++++.+++. + .++.+| ||+||+. +|+++
T Consensus 368 ~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~-------la~al 440 (529)
T PRK15134 368 FQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIA-------IARAL 440 (529)
T ss_pred EeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHH-------HHHHH
Confidence 5543 123334444433211 112234456777888774 2 688999 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
+.+|+++|+ ++|+.. ...+.+++++++++ +.++|+++ |+.+.+..+ ++++++++|+++..++..+
T Consensus 441 ~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tvi~vs-----Hd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 512 (529)
T PRK15134 441 ILKPSLIILDEPTSSLDKTV---QAQILALLKSLQQKHQLAYLFIS-----HDLHVVRALCHQVIVLRQGEVVEQGDCER 512 (529)
T ss_pred hCCCCEEEeeCCccccCHHH---HHHHHHHHHHHHHhhCCEEEEEe-----CCHHHHHHhcCeEEEEECCEEEEEcCHHH
Confidence 999999999 888876 88889999988764 78888888 888888876 9999999999998776655
Q ss_pred ee
Q 016165 391 VY 392 (394)
Q Consensus 391 v~ 392 (394)
++
T Consensus 513 ~~ 514 (529)
T PRK15134 513 VF 514 (529)
T ss_pred Hh
Confidence 53
No 250
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=5.2e-19 Score=162.75 Aligned_cols=189 Identities=21% Similarity=0.339 Sum_probs=120.2
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|...| ..+. +.+.+.+...
T Consensus 6 ~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--------~~G~--i~~~g~~~~~~~~~~ 74 (229)
T cd03254 6 ENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--------QKGQ--ILIDGIDIRDISRKS 74 (229)
T ss_pred EEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--------CCCE--EEECCEeHHHcCHHH
Confidence 3556677531 3589999999887 9999999999999999999999842 2222 2222211110
Q ss_pred -cCCceeeeccCCCCCcccccccccchh-----hhhh-----cCCccccccc--eee----cCCCCCc-hhhhhhhcccC
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLSK-----FECS-----QMPHSLLEHI--TLV----DTPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~-----~~~~~~l~~~--~l~----Dt~g~ls-Ge~qrv~~~~~ 309 (394)
.....+.++....+.+ +...+..+.. .... ....++++.+ ++. ..+..+| ||+||+.
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~---- 149 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLA---- 149 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHH----
Confidence 1122333333322222 2222221100 0000 0111122221 121 2467888 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLN 384 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ .+|+.. ...+.++++.+. ++.++++++ |+.+.+..+++++.+++|+++.
T Consensus 150 ---la~al~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~-~~~tii~~s-----h~~~~~~~~d~i~~l~~g~~~~ 217 (229)
T cd03254 150 ---IARAMLRDPKILILDEATSNIDTET---EKLIQEALEKLM-KGRTSIIIA-----HRLSTIKNADKILVLDDGKIIE 217 (229)
T ss_pred ---HHHHHhcCCCEEEEeCccccCCHHH---HHHHHHHHHHhc-CCCEEEEEe-----cCHHHHhhCCEEEEEeCCeEEE
Confidence 99999999999999 888876 778889998886 477788888 6676665569999999999987
Q ss_pred cCcccee
Q 016165 385 TPEVVRV 391 (394)
Q Consensus 385 ~~~~~~v 391 (394)
.++..++
T Consensus 218 ~~~~~~~ 224 (229)
T cd03254 218 EGTHDEL 224 (229)
T ss_pred eCCHHHH
Confidence 7665443
No 251
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.5e-18 Score=161.90 Aligned_cols=192 Identities=23% Similarity=0.311 Sum_probs=129.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... .....|..+. +.+++++...
T Consensus 8 ~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~--v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 8 NLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND---LIPGFRHEGH--IYLDGVDIYDPAVDVV 80 (250)
T ss_pred eEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc---cCCCCCCccE--EEECCEEcccccccHH
Confidence 45567765 5699999999877 999999999999999999999752 0000012333 3333433211
Q ss_pred --cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceee-------c-CCCCCc-hhhhhhhccc
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~-------D-t~g~ls-Ge~qrv~~~~ 308 (394)
.....+.++....+.. +...+.... .....+.+.++++.+++. | .++.+| ||+||+.
T Consensus 81 ~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~--- 156 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLC--- 156 (250)
T ss_pred HHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHH---
Confidence 1234555555444443 333333111 011223344455555442 3 467788 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ ++|+.. ...+.++++++++ +.++++++ |+.+++..+ ++++++++|++
T Consensus 157 ----laral~~~p~llllDEP~~gLD~~~---~~~l~~~l~~~~~-~~tiii~s-----h~~~~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 157 ----IARTIAVSPEVILMDEPCSALDPIS---TTKIEDLIHKLKE-DYTIVIVT-----HNMQQATRVSKYTSFFLNGEI 223 (250)
T ss_pred ----HHHHHHcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEE-----CCHHHHHhhcCEEEEEECCeE
Confidence 99999999999999 888876 7788899988864 67777777 778888777 77888999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..++..++
T Consensus 224 ~~~g~~~~~ 232 (250)
T PRK14266 224 IESGLTDQI 232 (250)
T ss_pred EEeCCHHHH
Confidence 887766554
No 252
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=8e-19 Score=158.72 Aligned_cols=169 Identities=14% Similarity=0.186 Sum_probs=113.9
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----c
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-----I 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-----~ 248 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... .
T Consensus 6 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------p~~G~--v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 6 NLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--------PDAGE--VLWQGEPIRRQRDEYH 73 (204)
T ss_pred EEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEEcccchHHhh
Confidence 45567766 5699999999887 999999999999999999999983 33333 2222222110 1
Q ss_pred CCceeeeccCCCCCcccccccccchh-h---hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLSK-F---ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~-~---~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
....+..+....+...+..++..+.. . ...+.+.++++.+++.+ .++.+| ||+||+. +|++++.
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~-------la~al~~ 146 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVA-------LARLWLT 146 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHH-------HHHHHhc
Confidence 12223333332233334444432111 1 22234556777777753 567888 9999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV 371 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~ 371 (394)
+|+++|+ .+|+.. ...+.++++++++++.++++++ |+...+..+
T Consensus 147 ~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~s-----h~~~~i~~~ 195 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQG---VARLEALLAQHAEQGGMVILTT-----HQDLPVASD 195 (204)
T ss_pred CCCEEEEeCCCccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----cChhhhccC
Confidence 9999999 788876 7788889988876677888888 666665443
No 253
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=1.1e-18 Score=158.90 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=118.1
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---cC
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---IP 249 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---~~ 249 (394)
-++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+... ..
T Consensus 15 ~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--------~~~G~--i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 15 HALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--------VESGQ--IQIDGKTATRGDRSR 82 (214)
T ss_pred eeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--------CCCee--EEECCEEccchhhhh
Confidence 455667766 5699999999887 999999999999999999999983 33333 2223322111 11
Q ss_pred CceeeeccCCCCCcccccccccch----hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhc
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS----KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
...+..+....+.+.+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+. +||+++.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~ 155 (214)
T PRK13543 83 FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLA-------LARLWLSP 155 (214)
T ss_pred ceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHH-------HHHHHhcC
Confidence 233344443334444444443111 1112223345666666532 677888 9999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhh
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMW 377 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~ 377 (394)
|+++|+ .+|+.. ...+.++++.+.+++.++++++ |+.+.+.++ ++++.+
T Consensus 156 p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~s-----H~~~~~~~~~~~i~~l 210 (214)
T PRK13543 156 APLWLLDEPYANLDLEG---ITLVNRMISAHLRGGGAALVTT-----HGAYAAPPVRTRMLTL 210 (214)
T ss_pred CCEEEEeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----cChhhhhhhcceEEEE
Confidence 999999 788776 7788889988877777888887 777777665 555544
No 254
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.76 E-value=9.9e-19 Score=159.99 Aligned_cols=182 Identities=20% Similarity=0.224 Sum_probs=125.3
Q ss_pred eeeeeecCC--cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 176 EVTYRFNDF--VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 176 ~~~~~~~~~--~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
++++.|++. ...++++++|++.. +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 6 NLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--------VQEGS--LKVLGQELYGASEK 75 (220)
T ss_pred EEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCeE--EEECCEEhHhcCHh
Confidence 445566531 14589999999887 999999999999999999999883 33343 2233332211
Q ss_pred -----cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccC
Q 016165 248 -----IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 248 -----~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~ 309 (394)
..+..+.++....+...+...+..+. ..+..+.+.++++.+++.+ .+..+| ||+||+.
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~---- 151 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVA---- 151 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH----
Confidence 12344455554444434444333111 1112334667778887753 567788 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ ++|+.. ...+.++++.+.+ .+.++++++ |+.+....+++++++++|++
T Consensus 152 ---laral~~~p~illlDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tii~~s-----h~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 152 ---IARALVHRPKLVLADEPTAALDSKS---GRDVVELMQKLAREQGCTILIVT-----HDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred ---HHHHHhcCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHhhCCEEEEEECCEE
Confidence 99999999999999 888876 7788889988875 478888888 66664433389999998876
No 255
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.76 E-value=1.4e-18 Score=156.75 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=112.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----cc
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-----SI 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~-----~~ 248 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+.. ..
T Consensus 5 ~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 5 ELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--------PLAGR--VLLNGGPLDFQRDSIA 72 (201)
T ss_pred EEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEecccccHHhh
Confidence 45667766 5689999998877 999999999999999999999983 33333 222222211 11
Q ss_pred CCceeeeccCCCCCcccccccccch-hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCC
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~d 322 (394)
.+..+..+....+...+..++..+. .....+.+.++++.+++.+ .+..+| ||+||+. +||+++.+|+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~~p~ 145 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVA-------LARLLLSGRP 145 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHH-------HHHHHhcCCC
Confidence 1233333333323333333433111 1112233455666676643 567788 9999999 9999999999
Q ss_pred EEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH
Q 016165 323 LILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV 371 (394)
Q Consensus 323 llLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~ 371 (394)
++|+ .+|+.. ...+.++++++++++.++|+++ |+...+..+
T Consensus 146 llllDEPt~~LD~~~---~~~l~~~l~~~~~~g~tiii~s-----H~~~~~~~~ 191 (201)
T cd03231 146 LWILDEPTTALDKAG---VARFAEAMAGHCARGGMVVLTT-----HQDLGLSEA 191 (201)
T ss_pred EEEEeCCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----cCchhhhhc
Confidence 9999 888876 7888888988877678888888 655555444
No 256
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.76 E-value=1.1e-18 Score=162.65 Aligned_cols=178 Identities=18% Similarity=0.214 Sum_probs=123.1
Q ss_pred ccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc------CCceeeeccCC
Q 016165 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI------PGNTVAVQADM 259 (394)
Q Consensus 188 ~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~------~~~~~~~~~~~ 259 (394)
++++++|++.. +++|+|+||||||||+++|+|... + .+. +.+.+++.... ....+.++...
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--------~-~G~--i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 79 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--------G-SGS--IQFAGQPLEAWSAAELARHRAYLSQQQT 79 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--------C-CeE--EEECCEecCcCCHHHHhhheEEecccCc
Confidence 68888988877 999999999999999999999872 1 222 22333322111 11233444332
Q ss_pred CCCcccccccccch------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhh-------cC
Q 016165 260 PFSGLTTFGTAFLS------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA-------KC 321 (394)
Q Consensus 260 ~~~g~~~~~~~~~~------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~-------~~ 321 (394)
.+...+...+..+. .....+.+.++++.+++.+ .++.+| ||+||+. +|++++. +|
T Consensus 80 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~~~~~~p~p 152 (248)
T PRK03695 80 PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVR-------LAAVVLQVWPDINPAG 152 (248)
T ss_pred cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHH-------HHHHHhccccccCCCC
Confidence 23233333332111 1112334566777777754 578889 9999999 9999997 67
Q ss_pred CEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 322 dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
+++|+ ++|+.. ...+.++++.+.+++.++|+++ |+.+++..+ ++++++++|+++..++..++
T Consensus 153 ~llllDEPt~~LD~~~---~~~l~~~L~~~~~~~~tvi~~s-----H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQ---QAALDRLLSELCQQGIAVVMSS-----HDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CEEEEcCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----cCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999 888876 7888899988876678888888 888888776 99999999999877665443
No 257
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=2.8e-18 Score=152.32 Aligned_cols=149 Identities=17% Similarity=0.311 Sum_probs=104.3
Q ss_pred ccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-------CCceeeeccC
Q 016165 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-------PGNTVAVQAD 258 (394)
Q Consensus 188 ~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-------~~~~~~~~~~ 258 (394)
++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+.... ....+.++..
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--------PASGE--ITLDGKPVTRRSPRDAIRAGIAYVPEDR 84 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEECCccCHHHHHhCCeEEecCCc
Confidence 68899998887 999999999999999999999983 33343 33333222111 1223333321
Q ss_pred ---CCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeC
Q 016165 259 ---MPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFD 329 (394)
Q Consensus 259 ---~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD 329 (394)
..+...+..++. .+ +..+| ||+||+. +|++++.+|+++|+ .+|
T Consensus 85 ~~~~~~~~~t~~e~l------------------~~---~~~LS~G~~qrl~-------la~al~~~p~llllDEP~~~LD 136 (182)
T cd03215 85 KREGLVLDLSVAENI------------------AL---SSLLSGGNQQKVV-------LARWLARDPRVLILDEPTRGVD 136 (182)
T ss_pred ccCcccCCCcHHHHH------------------HH---HhhcCHHHHHHHH-------HHHHHccCCCEEEECCCCcCCC
Confidence 112222222211 00 00188 9999999 99999999999999 888
Q ss_pred CCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 330 PHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 330 ~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+.. ...+.++++.+.+++.++++++ |+.+.+..+ ++++++++|++
T Consensus 137 ~~~---~~~l~~~l~~~~~~~~tiii~s-----h~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 137 VGA---KAEIYRLIRELADAGKAVLLIS-----SELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEecCCcC
Confidence 876 7888899998876677778777 888888776 89999988874
No 258
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.76 E-value=8.6e-19 Score=186.24 Aligned_cols=193 Identities=22% Similarity=0.276 Sum_probs=135.3
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--+++++|++..+.+++++++++++ +++|+|+||||||||+++|+|.+ .|..|. +.+++.+...+
T Consensus 464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~--------~p~~G~--I~idg~~l~~~~ 533 (694)
T TIGR03375 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY--------QPTEGS--VLLDGVDIRQID 533 (694)
T ss_pred EEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCce--EEECCEEhhhCC
Confidence 445567888875435699999999987 99999999999999999999999 455554 44455443332
Q ss_pred -----CCceeeeccCCCCCcccccccccchhh-hhhcCCcccccccee---------------ecCCCCCc-hhhhhhhc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHITL---------------VDTPGVLS-GEKQRTQR 306 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~l---------------~Dt~g~ls-Ge~qrv~~ 306 (394)
....++.|+.+.|.| +..+|..+.+. ...+...++++..++ .+....+| ||+||++
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla- 611 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA- 611 (694)
T ss_pred HHHHHhccEEECCChhhhhh-hHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH-
Confidence 245667777777766 45555432211 111111112222221 12234577 8999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++++|+++|+ .+|+.. ...+.+.+..+.+ ++++|+|+ |+.+.+..+|+++++++|+
T Consensus 612 ------lARall~~p~iliLDE~Ts~LD~~t---e~~i~~~l~~~~~-~~T~iiIt-----Hrl~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 612 ------LARALLRDPPILLLDEPTSAMDNRS---EERFKDRLKRWLA-GKTLVLVT-----HRTSLLDLVDRIIVMDNGR 676 (694)
T ss_pred ------HHHHHhcCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHhC-CCEEEEEe-----cCHHHHHhCCEEEEEeCCE
Confidence 99999999999999 777765 6677777777654 67888888 6677777679999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
+++.|+..++
T Consensus 677 i~e~G~~~eL 686 (694)
T TIGR03375 677 IVADGPKDQV 686 (694)
T ss_pred EEeeCCHHHH
Confidence 9998876654
No 259
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.76 E-value=2.4e-18 Score=160.23 Aligned_cols=190 Identities=17% Similarity=0.218 Sum_probs=122.3
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|++ +.+++++++++.+ +++|+|+||||||||+++|+|.... .|..+. +.+.+.+....
T Consensus 5 ~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~~~G~--i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 5 KDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDY------EVTGGT--VEFKGKDLLELSPED 74 (248)
T ss_pred EEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccC------CCCceE--EEECCCccccCCHHH
Confidence 355667776 5699999999887 9999999999999999999998510 122232 22233221110
Q ss_pred ---CCceeeeccCCCCCcccccc-------ccc-------chhhhhhcCCccccccceee----cC-C-CCCc-hhhhhh
Q 016165 249 ---PGNTVAVQADMPFSGLTTFG-------TAF-------LSKFECSQMPHSLLEHITLV----DT-P-GVLS-GEKQRT 304 (394)
Q Consensus 249 ---~~~~~~~~~~~~~~g~~~~~-------~~~-------~~~~~~~~~~~~~l~~~~l~----Dt-~-g~ls-Ge~qrv 304 (394)
.+..++.+....+...+... +.. +......+.+.++++.+++. +. + ..+| ||+||+
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv 154 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 154 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH
Confidence 12233333322222111000 000 00001122334455555552 22 3 2588 999999
Q ss_pred hcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHH--HHhHhhh
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMR--VYGALMW 377 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~--~~~~~~~ 377 (394)
. +||+++.+|+++|+ .+|+.. ...+.++++.+++.+.++|+++ |+.+.+.. .++++++
T Consensus 155 ~-------laral~~~p~illLDEPt~~LD~~~---~~~l~~~l~~l~~~~~tiii~s-----H~~~~~~~~~~d~i~~l 219 (248)
T PRK09580 155 D-------ILQMAVLEPELCILDESDSGLDIDA---LKIVADGVNSLRDGKRSFIIVT-----HYQRILDYIKPDYVHVL 219 (248)
T ss_pred H-------HHHHHHcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHhhhCCEEEEE
Confidence 9 99999999999999 888876 7788888888877778888888 77777766 3888999
Q ss_pred ccceeeecCccc
Q 016165 378 SLGKVLNTPEVV 389 (394)
Q Consensus 378 ~~G~i~~~~~~~ 389 (394)
++|+++..++..
T Consensus 220 ~~g~i~~~g~~~ 231 (248)
T PRK09580 220 YQGRIVKSGDFT 231 (248)
T ss_pred ECCeEEEeCCHH
Confidence 999998766543
No 260
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.76 E-value=9.9e-19 Score=179.82 Aligned_cols=191 Identities=19% Similarity=0.213 Sum_probs=134.5
Q ss_pred eeeeeecC---CcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEe-cCc---cc
Q 016165 176 EVTYRFND---FVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMS-GVD---DR 246 (394)
Q Consensus 176 ~~~~~~~~---~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~-~~~---~~ 246 (394)
++++.|++ ....++++++|++.. +++|+|+||||||||+++|+|... |..++ +.+. +.+ ..
T Consensus 284 ~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--------p~~G~--i~~~~g~~~~~~~ 353 (520)
T TIGR03269 284 NVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--------PTSGE--VNVRVGDEWVDMT 353 (520)
T ss_pred ccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCeE--EEEecCCcccccc
Confidence 45567742 113589999998887 999999999999999999999983 33333 2221 110 00
Q ss_pred --------c-cCCceeeeccCCCCCcccccccccc------hhhhhhcCCccccccceee--------c-CCCCCc-hhh
Q 016165 247 --------S-IPGNTVAVQADMPFSGLTTFGTAFL------SKFECSQMPHSLLEHITLV--------D-TPGVLS-GEK 301 (394)
Q Consensus 247 --------~-~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~l~~~~l~--------D-t~g~ls-Ge~ 301 (394)
. .....++++....+...+...+... ......+.+.++++.+++. + .++.+| ||+
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 0 1123455555444444454444321 1111233455677777773 2 578899 999
Q ss_pred hhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhH
Q 016165 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGA 374 (394)
Q Consensus 302 qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~ 374 (394)
||+. +|++++.+|+++|+ .+|+.. ...+.++++++.++ +.++|+++ |+.+.+..+ +++
T Consensus 434 qrv~-------laral~~~p~lLllDEPt~~LD~~~---~~~l~~~l~~l~~~~g~tvi~vs-----Hd~~~~~~~~d~i 498 (520)
T TIGR03269 434 HRVA-------LAQVLIKEPRIVILDEPTGTMDPIT---KVDVTHSILKAREEMEQTFIIVS-----HDMDFVLDVCDRA 498 (520)
T ss_pred HHHH-------HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHHcCcEEEEEe-----CCHHHHHHhCCEE
Confidence 9999 99999999999999 888876 88889999888654 78888888 888888877 999
Q ss_pred hhhccceeeecCcccee
Q 016165 375 LMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 375 ~~~~~G~i~~~~~~~~v 391 (394)
+++++|+++..+.+.++
T Consensus 499 ~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 499 ALMRDGKIVKIGDPEEI 515 (520)
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999887766554
No 261
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.75 E-value=9.4e-19 Score=181.88 Aligned_cols=193 Identities=19% Similarity=0.278 Sum_probs=133.6
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
++--++++.|++..+.+++++++++++ +++|+|+||||||||+++|+|.. .|..++ +.+++.+...++
T Consensus 339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~--------~p~~G~--I~i~g~~i~~~~ 408 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW--------DPQQGE--ILLNGQPIADYS 408 (574)
T ss_pred EEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCce--EEECCEEhhhCC
Confidence 444566778865324589999999988 99999999999999999999999 455555 344454433322
Q ss_pred ------CceeeeccCCCCCcccccccccchh-hhhhcCCccccccceee---------c-----CCCCCc-hhhhhhhcc
Q 016165 250 ------GNTVAVQADMPFSGLTTFGTAFLSK-FECSQMPHSLLEHITLV---------D-----TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 250 ------~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~l~---------D-----t~g~ls-Ge~qrv~~~ 307 (394)
...++.|+...|.+ +..+|..+.. ....+...++++..++. | ....+| ||+||++
T Consensus 409 ~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRia-- 485 (574)
T PRK11160 409 EAALRQAISVVSQRVHLFSA-TLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG-- 485 (574)
T ss_pred HHHHHhheeEEcccchhhcc-cHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHH--
Confidence 35567777777765 4445542211 11111122222233221 1 234477 8999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++++|+++|+ .+|..+ ...+.+.+..+. +++++|+++ |....+..+|+++.+++|++
T Consensus 486 -----lARall~~~~ililDE~ts~lD~~t---~~~i~~~l~~~~-~~~tviiit-----Hr~~~~~~~d~i~~l~~G~i 551 (574)
T PRK11160 486 -----IARALLHDAPLLLLDEPTEGLDAET---ERQILELLAEHA-QNKTVLMIT-----HRLTGLEQFDRICVMDNGQI 551 (574)
T ss_pred -----HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHc-CCCEEEEEe-----cChhHHHhCCEEEEEeCCeE
Confidence 99999999999999 777765 667777777765 367888888 66667776799999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
++.|+..++
T Consensus 552 ~~~g~~~~l 560 (574)
T PRK11160 552 IEQGTHQEL 560 (574)
T ss_pred EEeCCHHHH
Confidence 988776544
No 262
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=9.7e-19 Score=182.68 Aligned_cols=192 Identities=17% Similarity=0.250 Sum_probs=134.6
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--++++.|++. ..+++++++++++ +++|+|++|||||||+++|+|.. .|..|+ +.+++.+...+
T Consensus 341 i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~--------~p~~G~--I~idg~~i~~~~ 409 (592)
T PRK10790 341 IDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY--------PLTEGE--IRLDGRPLSSLS 409 (592)
T ss_pred EEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc--------CCCCce--EEECCEEhhhCC
Confidence 3444667788642 4599999999988 99999999999999999999999 455554 44455443332
Q ss_pred -----CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceee----------c-----CCCCCc-hhhhhhhcc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----------D-----TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------D-----t~g~ls-Ge~qrv~~~ 307 (394)
....++.|+...|++ +...|..+......+...++++.+++. | ....+| ||+||++
T Consensus 410 ~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia-- 486 (592)
T PRK10790 410 HSVLRQGVAMVQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA-- 486 (592)
T ss_pred HHHHHhheEEEccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH--
Confidence 245667777777776 444444222111111122233333222 1 223467 8999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++++|+++|+ .+|..+ ...+.+.++.+.+ ++++|+|+ |+...+..+|+++++++|++
T Consensus 487 -----lARaLl~~~~illlDEpts~LD~~t---~~~i~~~l~~~~~-~~tvIivt-----Hr~~~l~~~D~ii~l~~G~i 552 (592)
T PRK10790 487 -----LARVLVQTPQILILDEATANIDSGT---EQAIQQALAAVRE-HTTLVVIA-----HRLSTIVEADTILVLHRGQA 552 (592)
T ss_pred -----HHHHHHhCCCEEEEeCCcccCCHHH---HHHHHHHHHHHhC-CCEEEEEe-----cchHHHHhCCEEEEEECCEE
Confidence 99999999999999 788765 6677777777654 57888888 77777777799999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..|...++
T Consensus 553 ~~~G~~~~L 561 (592)
T PRK10790 553 VEQGTHQQL 561 (592)
T ss_pred EEEcCHHHH
Confidence 988776554
No 263
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.75 E-value=1.7e-18 Score=177.32 Aligned_cols=179 Identities=16% Similarity=0.145 Sum_probs=124.9
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-------cCCceeeec
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-------IPGNTVAVQ 256 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-------~~~~~~~~~ 256 (394)
..++++++|++.. +++|+|+||||||||+++|+|...| |..+. +.+.+++... .....++.+
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-------~~~G~--i~~~g~~~~~~~~~~~~~~~i~~v~q 343 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-------KFEGN--VFINGKPVDIRNPAQAIRAGIAMVPE 343 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-------CCCeE--EEECCEECCCCCHHHHHhCCCEEcCc
Confidence 4589999998887 9999999999999999999999841 12232 2222222110 112333333
Q ss_pred cC---CCCCcccccccccc------------hhhhhhcCCccccccceee----c-CCCCCc-hhhhhhhcccChHHHHH
Q 016165 257 AD---MPFSGLTTFGTAFL------------SKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 257 ~~---~~~~g~~~~~~~~~------------~~~~~~~~~~~~l~~~~l~----D-t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.. ..+..++...+..+ ......+.+.++++.+++. | .++.+| ||+||+. +|+
T Consensus 344 ~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~-------la~ 416 (500)
T TIGR02633 344 DRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV-------LAK 416 (500)
T ss_pred chhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH-------HHH
Confidence 32 12222222222211 0111233456677777774 2 578899 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
+++.+|+++|+ .+|+.. ...+.++++.+++++.++|+++ |+.+++..+ ++++++++|+++...+.
T Consensus 417 al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tviivs-----Hd~~~~~~~~d~v~~l~~G~i~~~~~~ 487 (500)
T TIGR02633 417 MLLTNPRVLILDEPTRGVDVGA---KYEIYKLINQLAQEGVAIIVVS-----SELAEVLGLSDRVLVIGEGKLKGDFVN 487 (500)
T ss_pred HHhhCCCEEEEcCCCCCcCHhH---HHHHHHHHHHHHhCCCEEEEEC-----CCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 99999999999 899876 8888899999987788888888 888888887 99999999999865443
No 264
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=3e-18 Score=151.62 Aligned_cols=159 Identities=21% Similarity=0.319 Sum_probs=110.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----- 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----- 248 (394)
++++.|++....++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+....
T Consensus 5 ~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 5 NVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--------PQQGE--ITLDGVPVSDLEKALS 74 (178)
T ss_pred EEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--------CCCCE--EEECCEEHHHHHHHHH
Confidence 45566755212589999999887 999999999999999999999983 33444 33333221110
Q ss_pred CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeec-CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
....+..+....+. . .+.| .+..+| ||+||+. +||+++.+|+++|+
T Consensus 75 ~~i~~~~q~~~~~~-~------------------------tv~~~i~~~LS~G~~qrv~-------laral~~~p~~lll 122 (178)
T cd03247 75 SLISVLNQRPYLFD-T------------------------TLRNNLGRRFSGGERQRLA-------LARILLQDAPIVLL 122 (178)
T ss_pred hhEEEEccCCeeec-c------------------------cHHHhhcccCCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 11222222211111 0 1111 177788 9999999 99999999999999
Q ss_pred -----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeec
Q 016165 327 -----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNT 385 (394)
Q Consensus 327 -----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~ 385 (394)
.+|+.. ...+.++++.+. ++.++++++ |+.+.+..+++++.+++|+++..
T Consensus 123 DEP~~~LD~~~---~~~l~~~l~~~~-~~~tii~~s-----h~~~~~~~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 123 DEPTVGLDPIT---ERQLLSLIFEVL-KDKTLIWIT-----HHLTGIEHMDKILFLENGKIIMQ 177 (178)
T ss_pred ECCcccCCHHH---HHHHHHHHHHHc-CCCEEEEEe-----cCHHHHHhCCEEEEEECCEEEec
Confidence 788765 778888888885 467777777 66767654589999999998754
No 265
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.6e-18 Score=177.40 Aligned_cols=179 Identities=16% Similarity=0.200 Sum_probs=127.6
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-------cCCceeeecc
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-------IPGNTVAVQA 257 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-------~~~~~~~~~~ 257 (394)
.++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+++... ..+..+..+.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--------p~~G~--i~~~g~~~~~~~~~~~~~~~i~~~~q~ 336 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--------RTAGQ--VYLDGKPIDIRSPRDAIRAGIMLCPED 336 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--------CCCce--EEECCEECCCCCHHHHHhCCCEEcCcC
Confidence 488999998887 999999999999999999999984 33333 2222222110 0123333333
Q ss_pred C---CCCCcccccccccc-------------hhhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 258 D---MPFSGLTTFGTAFL-------------SKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 258 ~---~~~~g~~~~~~~~~-------------~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
. ..+...+..++... ......+.+.++++.+++. + .++.+| ||+||+. +|+
T Consensus 337 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~-------la~ 409 (501)
T PRK11288 337 RKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAI-------LGR 409 (501)
T ss_pred HhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHH-------HHH
Confidence 2 12222333222210 1112223456777788773 2 689999 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
+++.+|+++|+ .+|+.. ...+.++++++.+.+.++|+++ |+.+.+..+ ++++++++|+++..++..
T Consensus 410 al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tviivs-----Hd~~~~~~~~d~i~~l~~g~i~~~~~~~ 481 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGA---KHEIYNVIYELAAQGVAVLFVS-----SDLPEVLGVADRIVVMREGRIAGELARE 481 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhH---HHHHHHHHHHHHhCCCEEEEEC-----CCHHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999 899877 8889999999988888888888 888888887 999999999998776654
Q ss_pred e
Q 016165 390 R 390 (394)
Q Consensus 390 ~ 390 (394)
+
T Consensus 482 ~ 482 (501)
T PRK11288 482 Q 482 (501)
T ss_pred c
Confidence 4
No 266
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.4e-18 Score=150.99 Aligned_cols=187 Identities=16% Similarity=0.200 Sum_probs=141.0
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC-----
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP----- 249 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~----- 249 (394)
++++..+. +.+|+++|++++. +.+|+||||||||||.++|+|.. ....+.-.+.+.+++....+
T Consensus 9 Lhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p--------~Y~Vt~G~I~~~GedI~~l~~~ERA 79 (251)
T COG0396 9 LHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--------KYEVTEGEILFDGEDILELSPDERA 79 (251)
T ss_pred eEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CceEecceEEECCcccccCCHhHHH
Confidence 34455551 3799999999988 99999999999999999999987 33334444777888765543
Q ss_pred --CceeeeccCCCCCccccccccc--chh--------hhhhcCCccccccceeec-------CCCCCc-hhhhhhhcccC
Q 016165 250 --GNTVAVQADMPFSGLTTFGTAF--LSK--------FECSQMPHSLLEHITLVD-------TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 250 --~~~~~~~~~~~~~g~~~~~~~~--~~~--------~~~~~~~~~~l~~~~l~D-------t~g~ls-Ge~qrv~~~~~ 309 (394)
|....+|.+..++|++...... .+. .+......+.++.+++.+ ..|+ | ||++|.+
T Consensus 80 r~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GF-SGGEkKR~E---- 154 (251)
T COG0396 80 RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGF-SGGEKKRNE---- 154 (251)
T ss_pred hcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCc-CcchHHHHH----
Confidence 7788889999999987544332 111 122333444555555543 2343 5 8999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH--HhHhhhcccee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV--YGALMWSLGKV 382 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~--~~~~~~~~G~i 382 (394)
++..++.+|+++|+ ++|... .+.+.+.+..++..+..+++|+ |..+.+..+ |.+.++.+|+|
T Consensus 155 ---ilQ~~~lePkl~ILDE~DSGLDIda---lk~V~~~i~~lr~~~~~~liIT-----Hy~rll~~i~pD~vhvl~~GrI 223 (251)
T COG0396 155 ---ILQLLLLEPKLAILDEPDSGLDIDA---LKIVAEGINALREEGRGVLIIT-----HYQRLLDYIKPDKVHVLYDGRI 223 (251)
T ss_pred ---HHHHHhcCCCEEEecCCCcCccHHH---HHHHHHHHHHHhcCCCeEEEEe-----cHHHHHhhcCCCEEEEEECCEE
Confidence 99999999999999 788765 6677788899998899999999 777777666 89999999999
Q ss_pred eecCcc
Q 016165 383 LNTPEV 388 (394)
Q Consensus 383 ~~~~~~ 388 (394)
+..|++
T Consensus 224 v~sG~~ 229 (251)
T COG0396 224 VKSGDP 229 (251)
T ss_pred EecCCH
Confidence 998876
No 267
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.75 E-value=5.6e-18 Score=151.96 Aligned_cols=168 Identities=20% Similarity=0.243 Sum_probs=114.8
Q ss_pred ceeeeeecCC----cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhcc--CCCCCcCCCcccceeEEEEecCccc
Q 016165 175 LEVTYRFNDF----VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS--YPGAHIGPEPTTDRFVVVMSGVDDR 246 (394)
Q Consensus 175 l~~~~~~~~~----~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~--~~~~~vs~~p~t~r~~i~~~~~~~~ 246 (394)
-++++.|++. ...+++++++++.+ +++|+|+||||||||+++|+|.. . |..++ +.+.+++..
T Consensus 7 ~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--------~~~G~--i~~~g~~~~ 76 (194)
T cd03213 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--------GVSGE--VLINGRPLD 76 (194)
T ss_pred EeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--------CCceE--EEECCEeCc
Confidence 4556677541 14599999999887 99999999999999999999987 4 22333 333333221
Q ss_pred c---cCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCC
Q 016165 247 S---IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (394)
Q Consensus 247 ~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~d 322 (394)
. .....+.++....+.+.+...+..+.. . ...+| ||+||+. +||+++.+|+
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~------~~~LS~G~~qrv~-------laral~~~p~ 131 (194)
T cd03213 77 KRSFRKIIGYVPQDDILHPTLTVRETLMFAA------------K------LRGLSGGERKRVS-------IALELVSNPS 131 (194)
T ss_pred hHhhhheEEEccCcccCCCCCcHHHHHHHHH------------H------hccCCHHHHHHHH-------HHHHHHcCCC
Confidence 1 112233333333333333333221100 0 01678 9999999 9999999999
Q ss_pred EEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH-HHHHH-HhHhhhccceeeec
Q 016165 323 LILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ-QLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 323 llLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~-~~~~~-~~~~~~~~G~i~~~ 385 (394)
++|+ .+|... ...+.++++++.+++.++|+++ |+.+ ++..+ ++++++++|+++..
T Consensus 132 illlDEP~~~LD~~~---~~~l~~~l~~~~~~~~tiii~s-----h~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 132 LLFLDEPTSGLDSSS---ALQVMSLLRRLADTGRTIICSI-----HQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred EEEEeCCCcCCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----cCchHHHHHhcCEEEEEeCCEEEec
Confidence 9999 788766 7888899998876678888888 6664 55555 99999999998654
No 268
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.75 E-value=1e-18 Score=186.16 Aligned_cols=191 Identities=17% Similarity=0.246 Sum_probs=132.0
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--+++++|++..+.+++++++++++ +++|+|++|||||||+++|+|.+ .|..|+ +.+++.+...+
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~--------~p~~G~--I~idg~~i~~~~ 547 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY--------QPWSGE--ILFDGIPREEIP 547 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcE--EEECCEeHHHCC
Confidence 455677888875435699999999977 99999999999999999999999 455555 44555544333
Q ss_pred -----CCceeeeccCCCCCcccccccccchh-hhhhcCCccccccce---------------eecCCCCCc-hhhhhhhc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSK-FECSQMPHSLLEHIT---------------LVDTPGVLS-GEKQRTQR 306 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~---------------l~Dt~g~ls-Ge~qrv~~ 306 (394)
....++.|+...|.| +..+|..+.. ....+...++++..+ +.+....+| ||+||++
T Consensus 548 ~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRia- 625 (710)
T TIGR03796 548 REVLANSVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLE- 625 (710)
T ss_pred HHHHHhheeEEecCChhhhc-cHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHH-
Confidence 245667778777766 4445542211 111111111122211 122334477 8999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++++|+++|+ .+|... ...+.+.++ +.++++|+|+ |..+.+..+|+++++++|+
T Consensus 626 ------LARall~~p~iliLDEptS~LD~~t---e~~i~~~l~---~~~~T~Iiit-----Hrl~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 626 ------IARALVRNPSILILDEATSALDPET---EKIIDDNLR---RRGCTCIIVA-----HRLSTIRDCDEIIVLERGK 688 (710)
T ss_pred ------HHHHHhhCCCEEEEECccccCCHHH---HHHHHHHHH---hcCCEEEEEe-----cCHHHHHhCCEEEEEeCCE
Confidence 99999999999999 677654 455555544 4578888888 7777777779999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
+++.|+..++
T Consensus 689 i~~~G~~~~L 698 (710)
T TIGR03796 689 VVQRGTHEEL 698 (710)
T ss_pred EEEecCHHHH
Confidence 9988876554
No 269
>PLN03211 ABC transporter G-25; Provisional
Probab=99.75 E-value=1.2e-18 Score=182.72 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=137.2
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--ccCCce
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--SIPGNT 252 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--~~~~~~ 252 (394)
+++.|++ +.+++++++++.+ +++|+||||||||||+|+|+|...|. ..++. +.+++.+.. ......
T Consensus 74 l~~~~~~--~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~------~~sG~--I~inG~~~~~~~~~~i~ 143 (659)
T PLN03211 74 ETRQIQE--RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN------NFTGT--ILANNRKPTKQILKRTG 143 (659)
T ss_pred ccccCCC--CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC------ceeEE--EEECCEECchhhccceE
Confidence 3446666 6799999999887 99999999999999999999987310 01222 444444321 122345
Q ss_pred eeeccCCCCCcccccccccch----------hhhhhcCCccccccceeec---C------CCCCc-hhhhhhhcccChHH
Q 016165 253 VAVQADMPFSGLTTFGTAFLS----------KFECSQMPHSLLEHITLVD---T------PGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~D---t------~g~ls-Ge~qrv~~~~~~~~ 312 (394)
++.|....+..++..++..+. ..+..+.++++++.+++.+ | ++.+| ||+||+.
T Consensus 144 yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~------- 216 (659)
T PLN03211 144 FVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS------- 216 (659)
T ss_pred EECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHH-------
Confidence 666766666666665554211 1122344667777887754 2 34578 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH-HHHHH-HhHhhhccceeeec
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ-QLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~-~~~~~-~~~~~~~~G~i~~~ 385 (394)
+|++++.+|+++++ ++|... ...+.++++++.+++.++|+++ |++. ++.+. |+++++++|+++..
T Consensus 217 ia~aL~~~P~iLlLDEPtsgLD~~~---~~~l~~~L~~l~~~g~TvI~~s-----H~~~~~i~~~~D~iilL~~G~iv~~ 288 (659)
T PLN03211 217 IAHEMLINPSLLILDEPTSGLDATA---AYRLVLTLGSLAQKGKTIVTSM-----HQPSSRVYQMFDSVLVLSEGRCLFF 288 (659)
T ss_pred HHHHHHhCCCEEEEeCCCCCcCHHH---HHHHHHHHHHHHhCCCEEEEEe-----cCCCHHHHHhhceEEEecCCcEEEE
Confidence 99999999999999 888876 7888999999887788888888 6554 45454 99999999999988
Q ss_pred Ccccee
Q 016165 386 PEVVRV 391 (394)
Q Consensus 386 ~~~~~v 391 (394)
|+..++
T Consensus 289 G~~~~~ 294 (659)
T PLN03211 289 GKGSDA 294 (659)
T ss_pred CCHHHH
Confidence 876554
No 270
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.1e-18 Score=171.43 Aligned_cols=192 Identities=18% Similarity=0.241 Sum_probs=134.2
Q ss_pred hcCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc
Q 016165 171 KLKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI 248 (394)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~ 248 (394)
.++.-++++.|++. +.++++++|+++. +|||+|+|||||||++|+|++.. . ..++ |.++|++...+
T Consensus 351 ~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~--------d-~sG~--I~IdG~dik~~ 418 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF--------D-YSGS--ILIDGQDIKEV 418 (591)
T ss_pred cEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh--------c-cCCc--EEECCeeHhhh
Confidence 35556888899872 3399999999988 99999999999999999999988 2 3344 55667665433
Q ss_pred C------CceeeeccCCCCCcccccccccchhh-hhhcCCccccccceeec---------------CCCCCc-hhhhhhh
Q 016165 249 P------GNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHITLVD---------------TPGVLS-GEKQRTQ 305 (394)
Q Consensus 249 ~------~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~l~D---------------t~g~ls-Ge~qrv~ 305 (394)
. -..+++|+...|++ +.+.|+...+. .-.+.+-++-++.++-| .--.+| ||+||+.
T Consensus 419 ~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 419 SLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred ChHHhhhheeEeCCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence 2 35567788777765 33333322111 11111222223344433 122356 8999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
++|+++++|+++++ .+|..+ ..++++.+.. ...++++|+|. |+...+..+|+++++++|
T Consensus 498 -------laRa~lKda~Il~~DEaTS~LD~~T---E~~i~~~i~~-~~~~rTvI~Iv-----H~l~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 498 -------LARAFLKDAPILLLDEATSALDSET---EREILDMIMD-VMSGRTVIMIV-----HRLDLLKDFDKIIVLDNG 561 (591)
T ss_pred -------HHHHHhcCCCeEEecCcccccchhh---HHHHHHHHHH-hcCCCeEEEEE-----ecchhHhcCCEEEEEECC
Confidence 99999999999999 777765 6666666665 34578999999 566667778999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
++...|...++
T Consensus 562 ~v~e~gth~el 572 (591)
T KOG0057|consen 562 TVKEYGTHSEL 572 (591)
T ss_pred eeEEeccHHHH
Confidence 99887765543
No 271
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=1.5e-18 Score=157.33 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=114.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---cCC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---IPG 250 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---~~~ 250 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+... ...
T Consensus 7 ~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 7 DLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--------PAAGT--IKLDGGDIDDPDVAEA 74 (207)
T ss_pred eEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEeCcchhhHhh
Confidence 45667766 5689999999887 999999999999999999999883 33333 2333322110 112
Q ss_pred ceeeeccCCCCCcccccccccc-hhh--hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCC
Q 016165 251 NTVAVQADMPFSGLTTFGTAFL-SKF--ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (394)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~-~~~--~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~d 322 (394)
..+..+....+...+...+..+ ... ...+.+.++++.+++.+ .++.+| ||+||+. +|++++.+|+
T Consensus 75 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~ 147 (207)
T PRK13539 75 CHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVA-------LARLLVSNRP 147 (207)
T ss_pred cEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHH-------HHHHHhcCCC
Confidence 2333333322333333333311 111 11122456677777643 667889 9999999 9999999999
Q ss_pred EEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhH
Q 016165 323 LILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGA 374 (394)
Q Consensus 323 llLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~ 374 (394)
++|+ .+|+.. ...+.++++++.+++.++++++ |+.+++.. +++
T Consensus 148 llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~s-----H~~~~~~~-~~~ 195 (207)
T PRK13539 148 IWILDEPTAALDAAA---VALFAELIRAHLAQGGIVIAAT-----HIPLGLPG-ARE 195 (207)
T ss_pred EEEEeCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCchhhcc-CcE
Confidence 9999 888876 7888899988877788888888 55555443 443
No 272
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.8e-18 Score=164.60 Aligned_cols=193 Identities=20% Similarity=0.274 Sum_probs=126.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|...| .-..|..++ +.+.+.+...
T Consensus 49 ~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~---~~~~p~~G~--I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 49 EDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDR---IKAARIDGS--VELDGQDIYQDGVNL 121 (305)
T ss_pred EEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---cCCCCCceE--EEECCEEcccccccH
Confidence 455667776 5699999999887 9999999999999999999998731 000022333 2223322110
Q ss_pred ---cCCceeeeccCCCCCcccccccccchh--------------------hhhhcCCccccccceee-------c-CCCC
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLSK--------------------FECSQMPHSLLEHITLV-------D-TPGV 296 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~l~-------D-t~g~ 296 (394)
.....++++....+.. +...+..+.. ....+.+.++++.+++. + .+..
T Consensus 122 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred HHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence 1123344444333322 3333321110 01122334455555442 2 5677
Q ss_pred Cc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHH
Q 016165 297 LS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMR 370 (394)
Q Consensus 297 ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~ 370 (394)
+| ||+||+. +|++++.+|+++|+ ++|+.. ...+.++|+.+.+. .++|+++ |+.+.+..
T Consensus 201 LSgGq~qrv~-------LAraL~~~p~lLLLDEPtsgLD~~~---~~~l~~~L~~~~~~-~tiiivt-----H~~~~i~~ 264 (305)
T PRK14264 201 LSGGQQQRLC-------IARCLAVDPEVILMDEPASALDPIA---TSKIEDLIEELAEE-YTVVVVT-----HNMQQAAR 264 (305)
T ss_pred CCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHhcC-CEEEEEE-----cCHHHHHH
Confidence 88 9999999 99999999999999 888876 78888999988764 6777777 88888877
Q ss_pred H-HhH-hhhccceeeecCcccee
Q 016165 371 V-YGA-LMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 371 ~-~~~-~~~~~G~i~~~~~~~~v 391 (394)
+ +++ +++++|+++..++..++
T Consensus 265 ~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 265 ISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred hcCEEEEEecCCEEEEeCCHHHH
Confidence 6 775 56799999877665443
No 273
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.74 E-value=1.7e-18 Score=196.25 Aligned_cols=192 Identities=18% Similarity=0.141 Sum_probs=142.8
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-----S 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~-----~ 247 (394)
-++++.|++..+.++++++|.+.+ +++|+|+||||||||+++|+|... |..|.. .+.+.+.. .
T Consensus 1941 ~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--------ptsG~I--~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1941 NELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--------VTSGDA--TVAGKSILTNISDV 2010 (2272)
T ss_pred EEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--------CCccEE--EECCEECcchHHHH
Confidence 356677865224699999999887 999999999999999999999983 444442 22332211 1
Q ss_pred cCCceeeeccCCCCCcccccccccc-h------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFL-S------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~-~------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.....+.+|....+..++..++..+ . ..+..+.+.++++.+++.+ .++.+| ||+||+. +|+
T Consensus 2011 r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLs-------lA~ 2083 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLS-------TAI 2083 (2272)
T ss_pred hhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH-------HHH
Confidence 1234555666555555665555421 1 1123344567788888754 689999 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
+++.+|+++|+ ++|+.. ++.+.++|++++++|+++|+++ |+.++++.+ ++++++++|+++..|.+.
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~s---r~~l~~lL~~l~~~g~TIILtT-----H~mee~e~lcDrV~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQA---RRMLWNTIVSIIREGRAVVLTS-----HSMEECEALCTRLAIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999 899887 8889999999877788877777 889999887 999999999999887665
Q ss_pred ee
Q 016165 390 RV 391 (394)
Q Consensus 390 ~v 391 (394)
++
T Consensus 2156 ~L 2157 (2272)
T TIGR01257 2156 HL 2157 (2272)
T ss_pred HH
Confidence 43
No 274
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=2.8e-18 Score=161.01 Aligned_cols=173 Identities=17% Similarity=0.141 Sum_probs=115.8
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSG 263 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g 263 (394)
..++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+. ..+..+.......
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--------p~~G~--I~~~g~-------~~~~~~~~~~~~~ 99 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--------PTVGK--VDRNGE-------VSVIAISAGLSGQ 99 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--------CCceE--EEECCE-------EeEEecccCCCCC
Confidence 4588999998887 999999999999999999999983 33332 111111 0000011111111
Q ss_pred ccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----
Q 016165 264 LTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL----- 326 (394)
Q Consensus 264 ~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl----- 326 (394)
.+...+... ......+...++++.+++.+ .++.+| ||+||+. +|++++.+|+++|+
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~-------Laral~~~p~iLlLDEPt~ 172 (264)
T PRK13546 100 LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG-------FSINITVNPDILVIDEALS 172 (264)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH-------HHHHHhhCCCEEEEeCccc
Confidence 222222110 01111122233344444433 677888 9999999 99999999999999
Q ss_pred EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 327 LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 327 ~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
.+|+.. ...+.+++..+++.+.++|+++ |+...+..+ ++++++++|+++..++..+
T Consensus 173 gLD~~~---~~~l~~~L~~~~~~g~tiIiis-----H~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 229 (264)
T PRK13546 173 VGDQTF---AQKCLDKIYEFKEQNKTIFFVS-----HNLGQVRQFCTKIAWIEGGKLKDYGELDD 229 (264)
T ss_pred cCCHHH---HHHHHHHHHHHHHCCCEEEEEc-----CCHHHHHHHcCEEEEEECCEEEEeCCHHH
Confidence 788765 7788888888877778888888 788888776 8999999999987776544
No 275
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.6e-18 Score=160.18 Aligned_cols=187 Identities=19% Similarity=0.244 Sum_probs=119.6
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
++++.|++. ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 5 ~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--------~~~G~--v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 5 NVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--------VSSGS--ILIDGQDIREVTLDSL 73 (236)
T ss_pred EEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--------CCCCE--EEECCEEhhhCCHHHH
Confidence 445567431 4589999998877 999999999999999999999984 23333 2222222111
Q ss_pred cCCceeeeccCCCCCcccccccccch-----hhh-----hhcCCccccccc--ee----ecCCCCCc-hhhhhhhcccCh
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFLS-----KFE-----CSQMPHSLLEHI--TL----VDTPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~-----~~~~~~~~l~~~--~l----~Dt~g~ls-Ge~qrv~~~~~~ 310 (394)
.....+.++....+. .+...+..+. ... ......+.++.+ ++ ...+..+| ||+||+.
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~----- 147 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVA----- 147 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH-----
Confidence 012233333332222 1222222110 000 000111222222 11 12456788 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeec
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNT 385 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~ 385 (394)
+|++++.+|+++|+ .+|+.. ...+.+++..+++ +.++|+++ |+.+.+..+++++.+++|+++..
T Consensus 148 --la~aL~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~s-----h~~~~~~~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 148 --IARAILKNPPILLLDEATSALDTHT---EREIQAALRDVSK-GRTTIVIA-----HRLSTIVNADKIIVLKDGRIVER 216 (236)
T ss_pred --HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHhcC-CCEEEEEc-----CCHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999 888876 7888899988876 77888888 66767655699999999999876
Q ss_pred Cccce
Q 016165 386 PEVVR 390 (394)
Q Consensus 386 ~~~~~ 390 (394)
++..+
T Consensus 217 ~~~~~ 221 (236)
T cd03253 217 GTHEE 221 (236)
T ss_pred CCHHH
Confidence 65543
No 276
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.74 E-value=1.6e-18 Score=160.54 Aligned_cols=187 Identities=19% Similarity=0.244 Sum_probs=118.4
Q ss_pred eeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 176 EVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 176 ~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
++++.|++. ...++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 5 ~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--------~~~G~--i~~~g~~~~~~~~~~ 74 (238)
T cd03249 5 NVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--------PTSGE--ILLDGVDIRDLNLRW 74 (238)
T ss_pred EEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--------CCCCE--EEECCEehhhcCHHH
Confidence 445566531 13589999998877 999999999999999999999984 22332 2222221110
Q ss_pred -cCCceeeeccCCCCCcccccccccch-----hhhh-----hcCCccccccc--e----eecCCCCCc-hhhhhhhcccC
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS-----KFEC-----SQMPHSLLEHI--T----LVDTPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~-----~~~~~~~l~~~--~----l~Dt~g~ls-Ge~qrv~~~~~ 309 (394)
.....+.++....+. .+...+..+. .... .....++++.+ + +...+..+| ||+||+.
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~---- 149 (238)
T cd03249 75 LRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIA---- 149 (238)
T ss_pred HHhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHH----
Confidence 011222333322221 1222222110 0000 00111122221 1 122567888 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLN 384 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~ 384 (394)
+|++++.+|+++|+ .+|+.. ...+.++++.+. ++.++++++ |+.+.+..+++++++++|+++.
T Consensus 150 ---la~al~~~p~llllDEP~~gLD~~~---~~~l~~~l~~~~-~g~~vi~~s-----h~~~~~~~~d~v~~l~~G~i~~ 217 (238)
T cd03249 150 ---IARALLRNPKILLLDEATSALDAES---EKLVQEALDRAM-KGRTTIVIA-----HRLSTIRNADLIAVLQNGQVVE 217 (238)
T ss_pred ---HHHHHhcCCCEEEEeCccccCCHHH---HHHHHHHHHHhc-CCCEEEEEe-----CCHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999 888876 788889998886 677888888 7777776449999999999987
Q ss_pred cCccc
Q 016165 385 TPEVV 389 (394)
Q Consensus 385 ~~~~~ 389 (394)
.++..
T Consensus 218 ~~~~~ 222 (238)
T cd03249 218 QGTHD 222 (238)
T ss_pred eCCHH
Confidence 66543
No 277
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=6.3e-18 Score=151.39 Aligned_cols=171 Identities=20% Similarity=0.219 Sum_probs=114.2
Q ss_pred ceeeeeecCC--cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--cc
Q 016165 175 LEVTYRFNDF--VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--SI 248 (394)
Q Consensus 175 l~~~~~~~~~--~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--~~ 248 (394)
-++++.|++. .+.++++++|++.+ +++|+|+||||||||+++|+|... . .|..+. +.+.+++.. ..
T Consensus 7 ~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~----~~~~G~--i~~~g~~~~~~~~ 78 (192)
T cd03232 7 KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT--A----GVITGE--ILINGRPLDKNFQ 78 (192)
T ss_pred eeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc--C----CCcceE--EEECCEehHHHhh
Confidence 3455667531 13589999998887 999999999999999999999752 0 122333 333333211 01
Q ss_pred CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl- 326 (394)
....+..+....+.+.+..++..+.. .+ + .+| ||+||+. +|++++.+|+++|+
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~------------~~---~---~LSgGe~qrv~-------la~al~~~p~vlllD 133 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA------------LL---R---GLSVEQRKRLT-------IGVELAAKPSILFLD 133 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH------------HH---h---cCCHHHhHHHH-------HHHHHhcCCcEEEEe
Confidence 12333344333333333333321110 00 0 688 9999999 99999999999999
Q ss_pred ----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH-HHHHH-HhHhhhcc-ceeeecC
Q 016165 327 ----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ-QLMRV-YGALMWSL-GKVLNTP 386 (394)
Q Consensus 327 ----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~-~~~~~-~~~~~~~~-G~i~~~~ 386 (394)
.+|+.. ...+.++++++.+.+.++++++ |+.+ .+... ++++.+++ |+++..|
T Consensus 134 EP~~~LD~~~---~~~l~~~l~~~~~~~~tiiivt-----H~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 134 EPTSGLDSQA---AYNIVRFLKKLADSGQAILCTI-----HQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCCcCCCHHH---HHHHHHHHHHHHHcCCEEEEEE-----cCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 788776 7788889988876678888888 6665 34454 89999998 9987643
No 278
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.9e-18 Score=175.25 Aligned_cols=195 Identities=21% Similarity=0.297 Sum_probs=140.2
Q ss_pred HHHhcCCceeeeeecCCc-CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCc
Q 016165 168 YIQKLKPLEVTYRFNDFV-SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVD 244 (394)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~ 244 (394)
.+..++..+++|.|.... ..+++|++|+++| +||+|||+|+||||+.+.|.+.+ .|..++ |..++.+
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY--------~PtsG~--IllDG~~ 531 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY--------DPTSGR--ILLDGVP 531 (716)
T ss_pred ccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc--------CCCCCe--EEECCee
Confidence 344567778899997642 3599999999999 99999999999999999999999 677776 5567776
Q ss_pred ccccC------CceeeeccCCCCCcccccccccch----hhhhhcCC------ccccccceeec--------CCCCCc-h
Q 016165 245 DRSIP------GNTVAVQADMPFSGLTTFGTAFLS----KFECSQMP------HSLLEHITLVD--------TPGVLS-G 299 (394)
Q Consensus 245 ~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~------~~~l~~~~l~D--------t~g~ls-G 299 (394)
...+. ....+-|++..|.+ +..+|+.+. ..+....+ ++... .+.| .--++| |
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH--hCccccccccCCccccccch
Confidence 65554 34446677777765 334443211 11111111 11111 1222 233567 8
Q ss_pred hhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhH
Q 016165 300 EKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGA 374 (394)
Q Consensus 300 e~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~ 374 (394)
||||++ ||||++++|.++|+ .+|++. ...+.+.+..+.+ +.+|++|. |...-++..+++
T Consensus 609 QKQRIA-------IARALlr~P~VLILDEATSALDaeS---E~lVq~aL~~~~~-~rTVlvIA-----HRLSTV~~Ad~I 672 (716)
T KOG0058|consen 609 QKQRIA-------IARALLRNPRVLILDEATSALDAES---EYLVQEALDRLMQ-GRTVLVIA-----HRLSTVRHADQI 672 (716)
T ss_pred HHHHHH-------HHHHHhcCCCEEEEechhhhcchhh---HHHHHHHHHHhhc-CCeEEEEe-----hhhhHhhhccEE
Confidence 999999 99999999999999 888876 6667777877655 47888888 777888888999
Q ss_pred hhhccceeeecCcccee
Q 016165 375 LMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 375 ~~~~~G~i~~~~~~~~v 391 (394)
+++++|++++.|.-.++
T Consensus 673 vvi~~G~V~E~G~h~eL 689 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDEL 689 (716)
T ss_pred EEEcCCeEEecccHHHH
Confidence 99999999988754443
No 279
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.74 E-value=2.4e-18 Score=177.87 Aligned_cols=194 Identities=20% Similarity=0.202 Sum_probs=131.1
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--++++.|++..+.+++++++++++ .++|+|+||||||||+++|+|... |..++ +.+++.+...+
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--------~~~G~--i~~~g~~i~~~~ 386 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--------PTSGS--VRLDGADLKQWD 386 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEehhhCC
Confidence 333466778864334689999999988 999999999999999999999983 44444 33344332221
Q ss_pred -----CCceeeeccCCCCCccccccccc-chh-h---hh-----hcCCccccccc--e----eecCCCCCc-hhhhhhhc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAF-LSK-F---EC-----SQMPHSLLEHI--T----LVDTPGVLS-GEKQRTQR 306 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~-~~~-~---~~-----~~~~~~~l~~~--~----l~Dt~g~ls-Ge~qrv~~ 306 (394)
....++.|+...+.+ +..+|.. ... . +. .....+.++.+ + +.+....+| ||+||+.
T Consensus 387 ~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~- 464 (544)
T TIGR01842 387 RETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIA- 464 (544)
T ss_pred HHHHhhheEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHH-
Confidence 234556666666655 4444442 111 1 10 00112222222 1 112345577 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++++|+++|+ .+|... ...+.+.+..+..+++++|+++ |+...+..+|+++.+++|+
T Consensus 465 ------lARall~~~~ililDEpts~LD~~~---~~~i~~~l~~~~~~~~tvi~it-----h~~~~~~~~d~i~~l~~G~ 530 (544)
T TIGR01842 465 ------LARALYGDPKLVVLDEPNSNLDEEG---EQALANAIKALKARGITVVVIT-----HRPSLLGCVDKILVLQDGR 530 (544)
T ss_pred ------HHHHHhcCCCEEEEeCCccccCHHH---HHHHHHHHHHHhhCCCEEEEEe-----CCHHHHHhCCEEEEEECCE
Confidence 99999999999999 788766 7777788887765578888888 6666655569999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..|...++
T Consensus 531 i~~~g~~~~l 540 (544)
T TIGR01842 531 IARFGERDEV 540 (544)
T ss_pred EEeeCCHHHH
Confidence 9988765543
No 280
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=1.7e-18 Score=155.49 Aligned_cols=178 Identities=19% Similarity=0.223 Sum_probs=127.7
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCC-C
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPF-S 262 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~-~ 262 (394)
..+|+|++|++.. .++|+|+||||||||++.|+|.+ .|++++..+ .++-.. .......| +
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~--------~Pt~G~v~v--~G~v~~-------li~lg~Gf~p 102 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY--------KPTSGKVKV--TGKVAP-------LIELGAGFDP 102 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc--------CCCCceEEE--cceEeh-------hhhcccCCCc
Confidence 4599999999887 99999999999999999999999 455555332 221100 11111111 1
Q ss_pred ccccccccc-------chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE--Ee
Q 016165 263 GLTTFGTAF-------LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL--LF 328 (394)
Q Consensus 263 g~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl--~l 328 (394)
.++..+|+. +.+.+..+..+++.+.-.+-| +...+| |++.|++ .+-+...+||++|+ ++
T Consensus 103 elTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLa-------Fsia~~~~pdILllDEvl 175 (249)
T COG1134 103 ELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLA-------FSVATHVEPDILLLDEVL 175 (249)
T ss_pred ccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHH-------HhhhhhcCCCEEEEehhh
Confidence 344555552 224455666666665555443 556677 9999999 78888999999999 55
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceee
Q 016165 329 DPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 329 D~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~ 392 (394)
++.+...++...+.+.++.+++.++++|. |+...+.++ +++++++.|++...|++.+++
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VS-----Hd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVS-----HDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEE-----CCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 55443347777888888877778888888 889999887 999999999999999887764
No 281
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=3.9e-18 Score=153.76 Aligned_cols=163 Identities=19% Similarity=0.234 Sum_probs=109.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
.++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 5 ~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--------~~~G~--v~~~g~~~~~~~~~~ 72 (200)
T PRK13540 5 IELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--------PEKGE--ILFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCee--EEECCCccccCHHHH
Confidence 355667776 5699999999887 999999999999999999999983 33333 3333332211
Q ss_pred cCCceeeeccCCCCCcccccccccchh--hhhhcCCccccccceee---c-CCCCCc-hhhhhhhcccChHHHHHHHhhc
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFLSK--FECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~l~---D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
.....+..+....+.+.+...+..... ......+.++++.+++. | .++.+| ||+||+. +||+++.+
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~-------laral~~~ 145 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVA-------LLRLWMSK 145 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHH-------HHHHHhcC
Confidence 112333333333333444444432110 01112345566665553 3 457888 9999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEec
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK 359 (394)
|+++|+ .+|+.. ...+.++++++++.+.++|+++|.
T Consensus 146 p~~lilDEP~~~LD~~~---~~~l~~~l~~~~~~~~tiii~sh~ 186 (200)
T PRK13540 146 AKLWLLDEPLVALDELS---LLTIITKIQEHRAKGGAVLLTSHQ 186 (200)
T ss_pred CCEEEEeCCCcccCHHH---HHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999999 788776 788889999887667888888843
No 282
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.74 E-value=1.9e-18 Score=179.54 Aligned_cols=193 Identities=20% Similarity=0.346 Sum_probs=139.2
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
++.-++++.|++. +.++++++|++++ ++||+|++|||||||+|.|++.+ .|..|+..+ ++.+...+.
T Consensus 329 I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~--------~~~~G~I~i--dg~dI~~i~ 397 (567)
T COG1132 329 IEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY--------DPTSGEILI--DGIDIRDIS 397 (567)
T ss_pred EEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC--------CCCCCeEEE--CCEehhhcC
Confidence 5566788899841 5799999999887 99999999999999999999999 566666443 666555443
Q ss_pred ------CceeeeccCCCCCcccccccccchhh-----hhhcC-----Cccccccc--eee----cCCCCCc-hhhhhhhc
Q 016165 250 ------GNTVAVQADMPFSGLTTFGTAFLSKF-----ECSQM-----PHSLLEHI--TLV----DTPGVLS-GEKQRTQR 306 (394)
Q Consensus 250 ------~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~-----~~~~l~~~--~l~----Dt~g~ls-Ge~qrv~~ 306 (394)
...++.|+.+.|.+ +...|..+.+. +..+. +.+.+..+ ++. +....+| ||+||++
T Consensus 398 ~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla- 475 (567)
T COG1132 398 LDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA- 475 (567)
T ss_pred HHHHHHhccEEcccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH-
Confidence 45567788888874 45555532211 11111 12222222 111 1233567 8999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++++|+++|+ .+|..+ ...+.+.+..+. +++++++|. |....+..+|+++++++|+
T Consensus 476 ------iARall~~~~ILILDEaTSalD~~t---E~~I~~~l~~l~-~~rT~iiIa-----HRlsti~~aD~IiVl~~G~ 540 (567)
T COG1132 476 ------IARALLRNPPILILDEATSALDTET---EALIQDALKKLL-KGRTTLIIA-----HRLSTIKNADRIIVLDNGR 540 (567)
T ss_pred ------HHHHHhcCCCEEEEeccccccCHHh---HHHHHHHHHHHh-cCCEEEEEe-----ccHhHHHhCCEEEEEECCE
Confidence 99999999999999 788876 677777777666 456788888 7777888889999999999
Q ss_pred eeecCccceee
Q 016165 382 VLNTPEVVRVY 392 (394)
Q Consensus 382 i~~~~~~~~v~ 392 (394)
+++.|...+++
T Consensus 541 i~e~G~h~eLl 551 (567)
T COG1132 541 IVERGTHEELL 551 (567)
T ss_pred EEEecCHHHHH
Confidence 99988776653
No 283
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.74 E-value=3.9e-18 Score=174.89 Aligned_cols=178 Identities=12% Similarity=0.186 Sum_probs=124.4
Q ss_pred ccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-------cCCceeeeccC
Q 016165 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-------IPGNTVAVQAD 258 (394)
Q Consensus 188 ~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-------~~~~~~~~~~~ 258 (394)
++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+... ..+..++++..
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--------p~~G~--i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--------ARGGR--IMLNGKEINALSTAQRLARGLVYLPEDR 347 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--------CCCcE--EEECCEECCCCCHHHHHhCCcEECCCCh
Confidence 68899998877 999999999999999999999884 22232 2222221110 01233333321
Q ss_pred ---CCCCccccccccc----------chhhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 259 ---MPFSGLTTFGTAF----------LSKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 259 ---~~~~g~~~~~~~~----------~~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
..+...+...+.. .......+.+.++++.+++. + .++.+| ||+||+. +|++++.
T Consensus 348 ~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~-------la~al~~ 420 (510)
T PRK15439 348 QSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVL-------IAKCLEA 420 (510)
T ss_pred hhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHH-------HHHHHhh
Confidence 1122222222210 00111223456677777774 2 678899 9999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
+|+++|+ .+|+.. ...+.++|+++++++.++|+++ |+.+.+..+ ++++++++|+++..++..+
T Consensus 421 ~p~lLlLDEPt~gLD~~~---~~~l~~~l~~l~~~g~tiIivs-----Hd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 421 SPQLLIVDEPTRGVDVSA---RNDIYQLIRSIAAQNVAVLFIS-----SDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred CCCEEEECCCCcCcChhH---HHHHHHHHHHHHhCCCEEEEEC-----CCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 9999999 899887 8889999999987788888888 888888887 9999999999987765544
No 284
>PLN03130 ABC transporter C family member; Provisional
Probab=99.74 E-value=1.9e-18 Score=196.18 Aligned_cols=193 Identities=19% Similarity=0.244 Sum_probs=139.1
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
++.-+++++|.+....+|+|++|++++ +|||+|++|||||||+++|+|.. .|..|+ |.++|.+...++
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~--------~p~~G~--I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV--------ELERGR--ILIDGCDISKFG 1307 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC--------CCCCce--EEECCEecccCC
Confidence 444577888875434699999999988 99999999999999999999998 455555 555666655443
Q ss_pred ------CceeeeccCCCCCcccccccccchhhhhhcCCccccccceee----------c-----CCCCCc-hhhhhhhcc
Q 016165 250 ------GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----------D-----TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 250 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------D-----t~g~ls-Ge~qrv~~~ 307 (394)
..+++.|+.+.|.| +...|.........+...++++..++. | ...-+| ||+||+.
T Consensus 1308 l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrla-- 1384 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS-- 1384 (1622)
T ss_pred HHHHHhccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHH--
Confidence 56778888888877 455554221111111112222222221 1 223467 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++++|+++|+ .+|..+ ...+.+.|++.. +++++|+|. |..+.+..+|+++++++|++
T Consensus 1385 -----LARALLr~p~ILILDEATSaLD~~T---e~~Iq~~I~~~~-~~~TvI~IA-----HRL~tI~~~DrIlVLd~G~I 1450 (1622)
T PLN03130 1385 -----LARALLRRSKILVLDEATAAVDVRT---DALIQKTIREEF-KSCTMLIIA-----HRLNTIIDCDRILVLDAGRV 1450 (1622)
T ss_pred -----HHHHHHcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHC-CCCEEEEEe-----CChHHHHhCCEEEEEECCEE
Confidence 99999999999999 777765 566667777664 368889998 77788888899999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
++.|.+.++
T Consensus 1451 vE~Gt~~eL 1459 (1622)
T PLN03130 1451 VEFDTPENL 1459 (1622)
T ss_pred EEeCCHHHH
Confidence 998876654
No 285
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=3.2e-18 Score=171.47 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=125.8
Q ss_pred ceeeeeecCCc-CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCc
Q 016165 175 LEVTYRFNDFV-SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGN 251 (394)
Q Consensus 175 l~~~~~~~~~~-~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~ 251 (394)
-++++.|++.. +.++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+... .+
T Consensus 25 knL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--------P~sGe--I~I~G~~~-~i--- 90 (549)
T PRK13545 25 KDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--------PNKGT--VDIKGSAA-LI--- 90 (549)
T ss_pred EEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEee-eE---
Confidence 34455665421 3589999999877 999999999999999999999983 33333 22222110 00
Q ss_pred eeeeccCCCCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 252 TVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
.........++..++..+ ...+..+.+.++++.+++.+ .++.+| ||+||+. +||+++.
T Consensus 91 ---~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVa-------LArAL~~ 160 (549)
T PRK13545 91 ---AISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLG-------FAISVHI 160 (549)
T ss_pred ---EeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHH-------HHHHHHh
Confidence 000001111222222210 11122233445666666643 678889 9999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
+|+++|+ .+|+.. ...+.++|+.+++++.++|+++ |+.+.+..+ ++++++++|+++..+++.++
T Consensus 161 ~P~LLLLDEPTsgLD~~s---r~~LlelL~el~~~G~TIIIVS-----Hdl~~i~~l~DrIivL~~GkIv~~G~~~el 230 (549)
T PRK13545 161 NPDILVIDEALSVGDQTF---TKKCLDKMNEFKEQGKTIFFIS-----HSLSQVKSFCTKALWLHYGQVKEYGDIKEV 230 (549)
T ss_pred CCCEEEEECCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEE-----CCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999 788776 7788889988877778888888 888888776 99999999999887766544
No 286
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.74 E-value=2.8e-18 Score=160.70 Aligned_cols=192 Identities=17% Similarity=0.244 Sum_probs=119.7
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--- 247 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--- 247 (394)
.--++++.|++....++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+...
T Consensus 21 ~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~i~g~~i~~~~~ 90 (257)
T cd03288 21 KIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--------IFDGK--IVIDGIDISKLPL 90 (257)
T ss_pred EEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--------CCCCe--EEECCEEhhhCCH
Confidence 33445567764223589999999887 999999999999999999999883 22332 2222222111
Q ss_pred ---cCCceeeeccCCCCCcccccccccch----h--h-h--hhcCCccccccc--ee---ec-CCCCCc-hhhhhhhccc
Q 016165 248 ---IPGNTVAVQADMPFSGLTTFGTAFLS----K--F-E--CSQMPHSLLEHI--TL---VD-TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~~~~~~~~~~----~--~-~--~~~~~~~~l~~~--~l---~D-t~g~ls-Ge~qrv~~~~ 308 (394)
.....++.+....+.+ +...+.... . . . ......+.++.+ ++ .+ .+..+| ||+||+.
T Consensus 91 ~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~--- 166 (257)
T cd03288 91 HTLRSRLSIILQDPILFSG-SIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFC--- 166 (257)
T ss_pred HHHhhhEEEECCCCccccc-HHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHH---
Confidence 0122333333322222 211111100 0 0 0 000111222222 11 11 345678 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVL 383 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ .+|+.. ...+.+++..+.+ +.++|+++ |+.+.+..+++++++++|+++
T Consensus 167 ----laral~~~p~llllDEPt~gLD~~~---~~~l~~~l~~~~~-~~tiii~s-----h~~~~~~~~dri~~l~~G~i~ 233 (257)
T cd03288 167 ----LARAFVRKSSILIMDEATASIDMAT---ENILQKVVMTAFA-DRTVVTIA-----HRVSTILDADLVLVLSRGILV 233 (257)
T ss_pred ----HHHHHhcCCCEEEEeCCccCCCHHH---HHHHHHHHHHhcC-CCEEEEEe-----cChHHHHhCCEEEEEECCEEE
Confidence 99999999999999 788765 6777888887654 67788887 667666657999999999998
Q ss_pred ecCcccee
Q 016165 384 NTPEVVRV 391 (394)
Q Consensus 384 ~~~~~~~v 391 (394)
..++..++
T Consensus 234 ~~g~~~~~ 241 (257)
T cd03288 234 ECDTPENL 241 (257)
T ss_pred EeCCHHHH
Confidence 87765443
No 287
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.74 E-value=2e-18 Score=180.14 Aligned_cols=190 Identities=18% Similarity=0.229 Sum_probs=129.8
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC-
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP- 249 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~- 249 (394)
+.-++++.|.+. +.++++++|++++ +++|+|++|||||||++.|+|.. | ..|+ +.+++.+...++
T Consensus 351 ~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--------~~G~--I~i~g~~i~~~~~ 418 (588)
T PRK11174 351 EAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--------YQGS--LKINGIELRELDP 418 (588)
T ss_pred EEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--------CCcE--EEECCEecccCCH
Confidence 334555544332 5699999999888 99999999999999999999987 3 1222 444454443332
Q ss_pred -----CceeeeccCCCCCcccccccccchhh-hhhcCCcccccccee---------------ecCCCCCc-hhhhhhhcc
Q 016165 250 -----GNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHITL---------------VDTPGVLS-GEKQRTQRA 307 (394)
Q Consensus 250 -----~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~l---------------~Dt~g~ls-Ge~qrv~~~ 307 (394)
...++.|+.+.|++ +..+|..+.+. ...+...++++..++ .+....+| ||+||++
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia-- 495 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA-- 495 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH--
Confidence 45667788887776 45555533211 111111111222111 12233477 8999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++++|+++|+ .+|..+ ...+.+.+..+. +++++|+|+ |..+.+...|+++++++|++
T Consensus 496 -----lARAll~~~~IliLDE~TSaLD~~t---e~~i~~~l~~~~-~~~TvIiIt-----Hrl~~i~~aD~Iivl~~G~i 561 (588)
T PRK11174 496 -----LARALLQPCQLLLLDEPTASLDAHS---EQLVMQALNAAS-RRQTTLMVT-----HQLEDLAQWDQIWVMQDGQI 561 (588)
T ss_pred -----HHHHHhcCCCEEEEeCCccCCCHHH---HHHHHHHHHHHh-CCCEEEEEe-----cChHHHHhCCEEEEEeCCeE
Confidence 99999999999999 788765 666777777764 367888888 66777777799999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
++.|+..++
T Consensus 562 ~e~G~~~eL 570 (588)
T PRK11174 562 VQQGDYAEL 570 (588)
T ss_pred eecCCHHHH
Confidence 988875544
No 288
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.74 E-value=4.4e-18 Score=174.19 Aligned_cols=180 Identities=15% Similarity=0.218 Sum_probs=127.7
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-------cCCceeeecc
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-------IPGNTVAVQA 257 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-------~~~~~~~~~~ 257 (394)
.++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+++... ..+..++.+.
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--------p~~G~--I~~~g~~i~~~~~~~~~~~~i~~v~q~ 335 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--------RTSGY--VTLDGHEVVTRSPQDGLANGIVYISED 335 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEECCCCCHHHHHHCCCEEecCc
Confidence 468999998887 999999999999999999999984 33333 2222222110 1134444444
Q ss_pred C---CCCCcccccccccc-------------hhhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 258 D---MPFSGLTTFGTAFL-------------SKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 258 ~---~~~~g~~~~~~~~~-------------~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
. ..+...+...+..+ ...+..+.+.++++.+++. + .++.+| ||+||+. +|+
T Consensus 336 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~-------lA~ 408 (501)
T PRK10762 336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVA-------IAR 408 (501)
T ss_pred cccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHH-------HHH
Confidence 2 12233333322211 0112233456777777773 2 678899 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
+++.+|+++|+ ++|+.. ...+.++++.+.+++.++|+++ |+.+++..+ ++++++++|+++..+...
T Consensus 409 al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~g~tviivt-----Hd~~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 409 GLMTRPKVLILDEPTRGVDVGA---KKEIYQLINQFKAEGLSIILVS-----SEMPEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHhhCCCEEEEcCCCCCCCHhH---HHHHHHHHHHHHHCCCEEEEEc-----CCHHHHHhhCCEEEEEECCEEEEEeccc
Confidence 99999999999 899877 8888999999987788888888 888888887 999999999998766555
Q ss_pred ee
Q 016165 390 RV 391 (394)
Q Consensus 390 ~v 391 (394)
++
T Consensus 481 ~~ 482 (501)
T PRK10762 481 QA 482 (501)
T ss_pred cC
Confidence 43
No 289
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.74 E-value=2.2e-18 Score=166.56 Aligned_cols=166 Identities=20% Similarity=0.292 Sum_probs=120.8
Q ss_pred EeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cCCceeeeccCCCCCcccccccccch----
Q 016165 202 LLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IPGNTVAVQADMPFSGLTTFGTAFLS---- 273 (394)
Q Consensus 202 IvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~---- 273 (394)
|+|+||||||||+++|+|... |..++ +.+.+.+... .....+.++....+.+++..++..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--------p~~G~--I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 70 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--------PDSGS--IMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR 70 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--------CCceE--EEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc
Confidence 589999999999999999983 33343 3333332211 12345566665556666665554221
Q ss_pred ---hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHH
Q 016165 274 ---KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFK 340 (394)
Q Consensus 274 ---~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~ 340 (394)
..+..+.+.++++.+++.+ .+..+| ||+||+. +||+++.+|+++|+ .+|+.. ...+.
T Consensus 71 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRva-------laraL~~~p~lllLDEP~s~LD~~~---~~~l~ 140 (325)
T TIGR01187 71 KVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVA-------LARALVFKPKILLLDEPLSALDKKL---RDQMQ 140 (325)
T ss_pred CCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEeCCCccCCHHH---HHHHH
Confidence 1122334566777777743 678899 9999999 99999999999999 888876 77888
Q ss_pred HHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceee
Q 016165 341 RVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 341 ~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~ 392 (394)
++++++.++ +.++|+++ |+.+++..+ ++++++++|+++..+++.++|
T Consensus 141 ~~l~~l~~~~g~tiiivT-----Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 141 LELKTIQEQLGITFVFVT-----HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred HHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 888888654 78888888 888888876 999999999999877766654
No 290
>PLN03232 ABC transporter C family member; Provisional
Probab=99.73 E-value=2.4e-18 Score=194.99 Aligned_cols=193 Identities=19% Similarity=0.222 Sum_probs=137.2
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
++--+++++|+.....+|+|+++++++ +|||+|++|||||||+++|+|.. .|..|+ |.+++.+...++
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~--------~p~~G~--I~IdG~di~~i~ 1304 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV--------ELEKGR--IMIDDCDVAKFG 1304 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------cCCCce--EEECCEEhhhCC
Confidence 444567888865435699999999988 99999999999999999999998 455555 455666554432
Q ss_pred ------CceeeeccCCCCCcccccccccchhhhhhcCCccccccceee---------------cCCCCCc-hhhhhhhcc
Q 016165 250 ------GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---------------DTPGVLS-GEKQRTQRA 307 (394)
Q Consensus 250 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------------Dt~g~ls-Ge~qrv~~~ 307 (394)
..+++.|+.+.|.| +...|.........+...++++..++. +....+| ||+||+.
T Consensus 1305 ~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrla-- 1381 (1495)
T PLN03232 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS-- 1381 (1495)
T ss_pred HHHHHhhcEEECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHH--
Confidence 46677888888877 455554221110111111122222221 1223577 8999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++++|+++|+ .+|..+ ...+.+.+++.. +++++|+|. |..+.+..+|+++++++|++
T Consensus 1382 -----LARALLr~~~ILILDEATSaLD~~T---e~~Iq~~L~~~~-~~~TvI~IA-----HRl~ti~~~DrIlVL~~G~i 1447 (1495)
T PLN03232 1382 -----LARALLRRSKILVLDEATASVDVRT---DSLIQRTIREEF-KSCTMLVIA-----HRLNTIIDCDKILVLSSGQV 1447 (1495)
T ss_pred -----HHHHHHhCCCEEEEECCcccCCHHH---HHHHHHHHHHHc-CCCEEEEEe-----CCHHHHHhCCEEEEEECCEE
Confidence 99999999999999 777755 566667776653 368889998 77778888899999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
++.|...++
T Consensus 1448 vE~Gt~~eL 1456 (1495)
T PLN03232 1448 LEYDSPQEL 1456 (1495)
T ss_pred EEECCHHHH
Confidence 998876654
No 291
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.73 E-value=1.7e-18 Score=184.29 Aligned_cols=191 Identities=17% Similarity=0.227 Sum_probs=132.2
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
++--++++.|++. +.+++++++++++ +++|+|++|||||||++.|+|.. .|..|+ +.+++.+...++
T Consensus 474 I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~--------~p~~G~--I~idg~~i~~~~ 542 (708)
T TIGR01193 474 IVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF--------QARSGE--ILLNGFSLKDID 542 (708)
T ss_pred EEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC--------CCCCcE--EEECCEEHHHcC
Confidence 4445677888642 5699999999977 99999999999999999999999 455555 444555443332
Q ss_pred ------CceeeeccCCCCCcccccccccch--hhhhhcCCccccccce---------------eecCCCCCc-hhhhhhh
Q 016165 250 ------GNTVAVQADMPFSGLTTFGTAFLS--KFECSQMPHSLLEHIT---------------LVDTPGVLS-GEKQRTQ 305 (394)
Q Consensus 250 ------~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~~---------------l~Dt~g~ls-Ge~qrv~ 305 (394)
...++.|+...|.| +..+|..+. .....+...++++..+ +.+....+| ||+||+.
T Consensus 543 ~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRia 621 (708)
T TIGR01193 543 RHTLRQFINYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621 (708)
T ss_pred HHHHHHheEEEecCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHH
Confidence 45667788877776 455555322 1100111111111111 122334467 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+||+++++|+++|+ .+|... ...+.+.+..+ +++++|+|+ |+.+.+..+|+++++++|
T Consensus 622 -------lARall~~p~iliLDE~Ts~LD~~t---e~~i~~~L~~~--~~~T~Iiit-----Hr~~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 622 -------LARALLTDSKVLILDESTSNLDTIT---EKKIVNNLLNL--QDKTIIFVA-----HRLSVAKQSDKIIVLDHG 684 (708)
T ss_pred -------HHHHHhhCCCEEEEeCccccCCHHH---HHHHHHHHHHh--cCCEEEEEe-----cchHHHHcCCEEEEEECC
Confidence 99999999999999 777655 56666667664 367888888 667777667999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..|...++
T Consensus 685 ~i~~~G~~~~L 695 (708)
T TIGR01193 685 KIIEQGSHDEL 695 (708)
T ss_pred EEEEECCHHHH
Confidence 99987765443
No 292
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=5e-18 Score=153.48 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=106.1
Q ss_pred eeeeeecCCc---CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCC
Q 016165 176 EVTYRFNDFV---SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPG 250 (394)
Q Consensus 176 ~~~~~~~~~~---~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~ 250 (394)
+++++|++.. ..++++++|++.+ +++|+|+||||||||+++|+|... |..+... +.+ .
T Consensus 5 ~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--------~~~G~i~--~~g-------~ 67 (204)
T cd03250 5 DASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--------KLSGSVS--VPG-------S 67 (204)
T ss_pred EEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--------CCCCeEE--EcC-------E
Confidence 4556776531 2599999999887 999999999999999999999983 3333321 111 1
Q ss_pred ceeeeccCCCCCcccccccccch----hhhhhc-----CCccccccc------eeecCCCCCc-hhhhhhhcccChHHHH
Q 016165 251 NTVAVQADMPFSGLTTFGTAFLS----KFECSQ-----MPHSLLEHI------TLVDTPGVLS-GEKQRTQRAYDFTGVT 314 (394)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~-----~~~~~l~~~------~l~Dt~g~ls-Ge~qrv~~~~~~~~ia 314 (394)
..+..+....+. .+..++..+. .....+ ...+.+... .+...+..+| ||+||+. +|
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~-------la 139 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRIS-------LA 139 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHH-------HH
Confidence 222222222221 1222222111 000000 001111111 1122567788 9999999 99
Q ss_pred HHHhhcCCEEEE-----EeCCCCCCchHHHHH-HHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 315 SWFAAKCDLILL-----LFDPHKLDISDEFKR-VITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 315 ral~~~~dllLl-----~lD~~~~~~~~~~~~-~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
|+++.+|+++|+ .+|+.. ...+.+ +++.+.+.+.++|+++ |+...+...++++.+++|+
T Consensus 140 ral~~~p~llllDEP~~~LD~~~---~~~l~~~ll~~~~~~~~tvi~~s-----h~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 140 RAVYSDADIYLLDDPLSAVDAHV---GRHIFENCILGLLLNNKTRILVT-----HQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHhcCCCEEEEeCccccCCHHH---HHHHHHHHHHHhccCCCEEEEEe-----CCHHHHhhCCEEEEEeCCC
Confidence 999999999999 777754 556666 4566655577888888 6666665567777777764
No 293
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.1e-17 Score=147.10 Aligned_cols=153 Identities=24% Similarity=0.412 Sum_probs=103.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP---- 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~---- 249 (394)
++++.|++....++++++|++.+ +++|+|+||+|||||+++|+|... |..++ +.+.+.+....+
T Consensus 5 ~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 5 NVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--------PTSGE--ILIDGVDLRDLDLESL 74 (171)
T ss_pred EEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--------CCCCE--EEECCEEhhhcCHHHH
Confidence 44556765212689999999887 999999999999999999999983 33343 333333221111
Q ss_pred --CceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 250 --GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 250 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
...+.++....+.. .+.|.. +| ||+||+. +|++++.+|+++|+
T Consensus 75 ~~~i~~~~~~~~~~~~-------------------------t~~e~l--LS~G~~~rl~-------la~al~~~p~llll 120 (171)
T cd03228 75 RKNIAYVPQDPFLFSG-------------------------TIRENI--LSGGQRQRIA-------IARALLRDPPILIL 120 (171)
T ss_pred HhhEEEEcCCchhccc-------------------------hHHHHh--hCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 11222222111110 111111 88 9999999 99999999999999
Q ss_pred -----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 327 -----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 327 -----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
.+|+.. ...+.++++.+.+ +.++++++ |+.+.+..+++++.+++|+
T Consensus 121 DEP~~gLD~~~---~~~l~~~l~~~~~-~~tii~~s-----h~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 121 DEATSALDPET---EALILEALRALAK-GKTVIVIA-----HRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred ECCCcCCCHHH---HHHHHHHHHHhcC-CCEEEEEe-----cCHHHHHhCCEEEEEcCCC
Confidence 888876 7888899988864 56777777 7776665567777777764
No 294
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.73 E-value=5.2e-18 Score=151.64 Aligned_cols=155 Identities=20% Similarity=0.274 Sum_probs=106.0
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--------ccCCceeee
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--------SIPGNTVAV 255 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--------~~~~~~~~~ 255 (394)
+.++++++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+.. ......+.+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--------~~~G~--i~~~g~~~~~~~~~~~~~~~~i~~~~ 74 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--------PQSGA--VLIDGEPLDYSRKGLLERRQRVGLVF 74 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCcee--EEECCEEccccccchHHHHhhEEEEe
Confidence 4589999998887 999999999999999999999984 33333 222332211 011234444
Q ss_pred ccCC-CCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCC
Q 016165 256 QADM-PFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (394)
Q Consensus 256 ~~~~-~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~d 322 (394)
+... .+...+...+..+. ..+..+.+.++++.+++.+ .+..+| ||+||+. +||+++.+|+
T Consensus 75 q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~ 147 (190)
T TIGR01166 75 QDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVA-------IAGAVAMRPD 147 (190)
T ss_pred cChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHH-------HHHHHhcCCC
Confidence 4431 11122334433211 1112234556677777643 678889 9999999 9999999999
Q ss_pred EEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecC
Q 016165 323 LILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (394)
Q Consensus 323 llLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~ 360 (394)
++|+ ++|+.. ...+.++++++++++.++++++|..
T Consensus 148 llllDEPt~~LD~~~---~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 148 VLLLDEPTAGLDPAG---REQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred EEEEcCCcccCCHHH---HHHHHHHHHHHHHcCCEEEEEeecc
Confidence 9999 888876 7888899998877788888888543
No 295
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.73 E-value=9.5e-18 Score=153.80 Aligned_cols=172 Identities=20% Similarity=0.225 Sum_probs=116.0
Q ss_pred CCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-cCCceeeeccCCCC--Ccccccccc
Q 016165 194 FDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-IPGNTVAVQADMPF--SGLTTFGTA 270 (394)
Q Consensus 194 ~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-~~~~~~~~~~~~~~--~g~~~~~~~ 270 (394)
+..+.+++|+|+||||||||+++|+|... |..++ +.+++.+... .....+.++....+ ...+...+.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l 72 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIP--------PAKGT--VKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTV 72 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCccchHhhCcEEEecccccccCCCCccHHHHH
Confidence 34455999999999999999999999983 33333 3333332211 11233333332111 011222221
Q ss_pred cc-----------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeC
Q 016165 271 FL-----------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFD 329 (394)
Q Consensus 271 ~~-----------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD 329 (394)
.. ......+.+.++++.+++.+ .++.+| ||+||+. +||+++.+|+++|+ .+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~llilDEP~~~LD 145 (223)
T TIGR03771 73 MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVL-------VARALATRPSVLLLDEPFTGLD 145 (223)
T ss_pred HhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCC
Confidence 00 01122334556677777643 678889 9999999 99999999999999 888
Q ss_pred CCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 330 PHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 330 ~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
+.. ...+.++++++++++.++|+++ |+.+++..+ ++++++ +|+++..++..++
T Consensus 146 ~~~---~~~l~~~l~~~~~~~~tvii~s-----H~~~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 146 MPT---QELLTELFIELAGAGTAILMTT-----HDLAQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHH---HHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 876 8888999998877788888888 788888776 888888 7999877765544
No 296
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.73 E-value=4e-18 Score=177.35 Aligned_cols=193 Identities=17% Similarity=0.238 Sum_probs=132.1
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
+.--+++++|.+..+.+++++++++++ +|+|+|++|+|||||+++|+|.. .|..|+ +.+++.+...+
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~--------~~~~G~--I~i~g~~i~~~~ 400 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY--------EPDSGQ--ILLDGHDLADYT 400 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc--------CCCCCe--EEECCEeHHhcC
Confidence 444566778865334689999999876 99999999999999999999999 455555 33344433322
Q ss_pred -----CCceeeeccCCCCCcccccccccchh--hhhhcCCccccccceee----------c-----CCCCCc-hhhhhhh
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSK--FECSQMPHSLLEHITLV----------D-----TPGVLS-GEKQRTQ 305 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~l~----------D-----t~g~ls-Ge~qrv~ 305 (394)
....++.|..+.|.| +..+|..+.+ ....+...++++.+++. | ....+| ||+||++
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred HHHHHhhceEEccCcccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 245667777777766 3444432221 11111222223333221 1 112367 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+||+++++|+++|+ .+|..+ ...+.+.+..+. .++++|+|+ |+......+|+++.+++|
T Consensus 480 -------LARall~~~~illLDEpts~LD~~~---~~~i~~~L~~~~-~~~tiIiit-----H~~~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 480 -------IARALLKDAPILILDEATSALDNES---ERLVQAALERLM-QGRTTLVIA-----HRLSTIEKADRIVVMDDG 543 (571)
T ss_pred -------HHHHHhcCCCEEEEeCccccCCHHH---HHHHHHHHHHHh-CCCEEEEEe-----hhhHHHHhCCEEEEEeCC
Confidence 99999999999999 788776 677777787764 357888888 777666667999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..|+..++
T Consensus 544 ~i~~~g~~~~l 554 (571)
T TIGR02203 544 RIVERGTHNEL 554 (571)
T ss_pred EEEeeCCHHHH
Confidence 99887765543
No 297
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.73 E-value=7.3e-18 Score=151.71 Aligned_cols=162 Identities=13% Similarity=0.162 Sum_probs=109.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----- 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----- 248 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+.+.+....
T Consensus 5 ~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 5 NLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--------PDSGE--VRWNGTALAEQRDEPH 72 (198)
T ss_pred EEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------CCccE--EEECCEEcccchHHhh
Confidence 44567776 5699999999887 999999999999999999999883 33333 22233221110
Q ss_pred CCceeeeccCCCCCcccccccccch-hh--hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhc
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-KF--ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-~~--~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
....+..+....+...+...+..+. .. .....+.++++.+++.+ .++.+| ||+||+. +|++++.+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~ 145 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLA-------LARLWLSR 145 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHH-------HHHHHhcC
Confidence 1223333333323333444433111 11 01123455666666643 678889 9999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEec
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK 359 (394)
|+++|+ .+|+.. ...+.+++..+.+.+.++|+++|.
T Consensus 146 p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~sH~ 186 (198)
T TIGR01189 146 APLWILDEPTTALDKAG---VALLAGLLRAHLARGGIVLLTTHQ 186 (198)
T ss_pred CCEEEEeCCCcCCCHHH---HHHHHHHHHHHHhCCCEEEEEEcc
Confidence 999999 788765 788888998887677888888853
No 298
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.73 E-value=8.4e-18 Score=153.59 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=109.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------ 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------ 247 (394)
+..+.|+.. ..++++++|++.+ +++|+|+||||||||+++|+|...| ..++ +.+.+.+...
T Consensus 5 ~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--------~~G~--i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 5 NGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--------LEGK--VHWSNKNESEPSFEAT 73 (218)
T ss_pred eeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--------CCCe--EEECCccccccccccc
Confidence 445677643 4689999999877 9999999999999999999999842 2222 1222221100
Q ss_pred ----cCCceeeeccCCCCCcccccccccchhhhhhcCCcccccccee---------------ecCCCCCc-hhhhhhhcc
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL---------------VDTPGVLS-GEKQRTQRA 307 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l---------------~Dt~g~ls-Ge~qrv~~~ 307 (394)
..+..+..+....+. .+...+..+..........++++.+++ ...++.+| ||+||+.
T Consensus 74 ~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~-- 150 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLN-ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRIC-- 150 (218)
T ss_pred chhhcceEEEEcCCCcccc-ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHH--
Confidence 012333344433232 233333211100000000111111111 12567788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHH--HHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKR--VITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~--~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+|++++.+|+++|+ .+|+.. ...+.+ +++.+++.+.++|+++ |+.+.+..+++++.+++|
T Consensus 151 -----laral~~~p~illlDEPt~~LD~~~---~~~l~~~~ll~~~~~~~~tii~~s-----H~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 151 -----VARALYQNTNIVFLDDPFSALDIHL---SDHLMQEGILKFLQDDKRTLVLVT-----HKLQYLPHADWIIAMKDG 217 (218)
T ss_pred -----HHHHHhhCCCEEEEeCCccccCHHH---HHHHHHHHHHHHHhcCCCEEEEEe-----CChHHHhhCCEEEEecCC
Confidence 99999999999999 788765 666666 6777766678888888 666665444777777766
No 299
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=8.7e-18 Score=173.18 Aligned_cols=173 Identities=18% Similarity=0.227 Sum_probs=119.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCccccee------EEEEecCcccc
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRF------VVVMSGVDDRS 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~------~i~~~~~~~~~ 247 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|...| ..+.. .+.+..+...
T Consensus 6 ~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--------~~G~i~~~~~~~i~~~~q~~~- 74 (530)
T PRK15064 6 NITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--------SAGNVSLDPNERLGKLRQDQF- 74 (530)
T ss_pred EEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCEEEEEeccCC-
Confidence 55677876 5699999999887 9999999999999999999998842 22221 1222222222
Q ss_pred cCCceeeeccCCCCCcccccccccc---------------------------------------hhhhhhcCCccccccc
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFL---------------------------------------SKFECSQMPHSLLEHI 288 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~---------------------------------------~~~~~~~~~~~~l~~~ 288 (394)
.+.+.+...+..+ ...+....+.++++.+
T Consensus 75 ------------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (530)
T PRK15064 75 ------------AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV 142 (530)
T ss_pred ------------cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Confidence 2222221111100 0001123455677777
Q ss_pred eeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEE
Q 016165 289 TLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (394)
Q Consensus 289 ~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~ 357 (394)
++.+ .++.+| ||+||+. +|++++.+|+++|+ .+|+.. ...+.+++. +.+.+||+++
T Consensus 143 gl~~~~~~~~~~~LSgGq~qrv~-------lA~aL~~~p~lLlLDEPt~~LD~~~---~~~l~~~l~---~~~~tiiivs 209 (530)
T PRK15064 143 GIPEEQHYGLMSEVAPGWKLRVL-------LAQALFSNPDILLLDEPTNNLDINT---IRWLEDVLN---ERNSTMIIIS 209 (530)
T ss_pred CCChhHhcCchhhcCHHHHHHHH-------HHHHHhcCCCEEEEcCCCcccCHHH---HHHHHHHHH---hCCCeEEEEe
Confidence 7742 478899 9999999 99999999999999 888766 555656654 3467788888
Q ss_pred ecCCccCHHHHHHH-HhHhhhccceee-ecCccc
Q 016165 358 NKADQVDTQQLMRV-YGALMWSLGKVL-NTPEVV 389 (394)
Q Consensus 358 nK~Dl~~~~~~~~~-~~~~~~~~G~i~-~~~~~~ 389 (394)
|+.+.+..+ ++++++++|+++ ..+...
T Consensus 210 -----Hd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 210 -----HDRHFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred -----CCHHHHHhhcceEEEEeCCEEEEecCCHH
Confidence 888888776 999999999984 555543
No 300
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.72 E-value=5.1e-18 Score=176.27 Aligned_cols=190 Identities=16% Similarity=0.221 Sum_probs=126.2
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-+++++|+.....+++++++++++ +++|+|+||||||||+++|+|.. .|..++ +.+++.+...+
T Consensus 317 ~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~--------~p~~G~--i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 317 NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF--------DVSEGD--IRFHDIPLTKLQLDS 386 (569)
T ss_pred EEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc--------CCCCCE--EEECCEEHhhCCHHH
Confidence 345667764324689999999888 99999999999999999999999 344444 33344332221
Q ss_pred --CCceeeeccCCCCCcccccccccchhh-hhhcCCccccccce---------------eecCCCCCc-hhhhhhhcccC
Q 016165 249 --PGNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHIT---------------LVDTPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 249 --~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~---------------l~Dt~g~ls-Ge~qrv~~~~~ 309 (394)
....++.|+...|.+ +..+|..+... ...+...+.++..+ +.+....+| ||+||+.
T Consensus 387 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~---- 461 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSD-TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS---- 461 (569)
T ss_pred HHhheEEEccCCeeccc-cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHH----
Confidence 234455666665654 44444422110 00000111111111 112334577 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLN 384 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~ 384 (394)
+||+++++|+++|+ .+|+.. ...+.+.++.+. +++++|+++ |+.+.+..+|+++.+++|+++.
T Consensus 462 ---lARall~~~~illlDEpts~LD~~~---~~~i~~~l~~~~-~~~tii~it-----H~~~~~~~~d~i~~l~~G~i~~ 529 (569)
T PRK10789 462 ---IARALLLNAEILILDDALSAVDGRT---EHQILHNLRQWG-EGRTVIISA-----HRLSALTEASEILVMQHGHIAQ 529 (569)
T ss_pred ---HHHHHhcCCCEEEEECccccCCHHH---HHHHHHHHHHHh-CCCEEEEEe-----cchhHHHcCCEEEEEeCCEEEE
Confidence 99999999999999 788765 677777787764 477888888 6666666679999999999998
Q ss_pred cCcccee
Q 016165 385 TPEVVRV 391 (394)
Q Consensus 385 ~~~~~~v 391 (394)
.|+..++
T Consensus 530 ~g~~~~l 536 (569)
T PRK10789 530 RGNHDQL 536 (569)
T ss_pred ecCHHHH
Confidence 8765443
No 301
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.72 E-value=4.8e-18 Score=180.65 Aligned_cols=191 Identities=18% Similarity=0.238 Sum_probs=128.2
Q ss_pred cCCceeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc
Q 016165 172 LKPLEVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~ 248 (394)
++--++++.|++. .+.+++|+++++++ +++|+|+||||||||+|+|+|.. .|..|+ +.+++.+...+
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~--------~p~~G~--I~idg~~i~~~ 548 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY--------QPTGGQ--VLLDGVPLVQY 548 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc--------CCCCCE--EEECCEEHHhc
Confidence 4445677888642 14699999999988 99999999999999999999999 455554 44555554333
Q ss_pred C------CceeeeccCCCCCcccccccccchhh-hhhcCCccccccce---------------eecCCCCCc-hhhhhhh
Q 016165 249 P------GNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHIT---------------LVDTPGVLS-GEKQRTQ 305 (394)
Q Consensus 249 ~------~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~---------------l~Dt~g~ls-Ge~qrv~ 305 (394)
. ...++.|+.+.|.+ +..+|..+... ...+...++++..+ +.+....+| ||+||++
T Consensus 549 ~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRla 627 (711)
T TIGR00958 549 DHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIA 627 (711)
T ss_pred CHHHHHhhceEEecCcccccc-CHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHH
Confidence 2 45667788777765 34444422211 00111111111111 111233577 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+||+++++|+++|+ .+|... .+.+.+ .....++++|+|+ |+.+.+...|+++++++|
T Consensus 628 -------lARALl~~p~ILILDEpTSaLD~~t---e~~i~~---~~~~~~~TvIiIt-----Hrl~~i~~aD~IivL~~G 689 (711)
T TIGR00958 628 -------IARALVRKPRVLILDEATSALDAEC---EQLLQE---SRSRASRTVLLIA-----HRLSTVERADQILVLKKG 689 (711)
T ss_pred -------HHHHHhcCCCEEEEEccccccCHHH---HHHHHH---hhccCCCeEEEEe-----ccHHHHHhCCEEEEEECC
Confidence 99999999999999 677643 344443 2223467888888 667777777999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
++++.|+..++
T Consensus 690 ~ive~Gt~~eL 700 (711)
T TIGR00958 690 SVVEMGTHKQL 700 (711)
T ss_pred EEEEeeCHHHH
Confidence 99988776554
No 302
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.8e-18 Score=166.81 Aligned_cols=193 Identities=20% Similarity=0.273 Sum_probs=132.6
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
++.-+++|+|.+....++++++|++.+ +|||+|++|||||||++.++|.. .|..+. +...+.+...++
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~--------~~~~G~--i~~~g~~~~~l~ 406 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW--------DPQQGS--ITLNGVEIASLD 406 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc--------CCCCCe--eeECCcChhhCC
Confidence 455567889988666799999999887 99999999999999999999988 344444 334444433333
Q ss_pred C------ceeeeccCCCCCcccccccccchhhh-hhcCCccccccceeec---------------CCCCCc-hhhhhhhc
Q 016165 250 G------NTVAVQADMPFSGLTTFGTAFLSKFE-CSQMPHSLLEHITLVD---------------TPGVLS-GEKQRTQR 306 (394)
Q Consensus 250 ~------~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~l~~~~l~D---------------t~g~ls-Ge~qrv~~ 306 (394)
. ..+..|....|.+ +...|....+.. .-+...++++.+++.| .---+| ||++|++
T Consensus 407 ~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA- 484 (573)
T COG4987 407 EQALRETISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA- 484 (573)
T ss_pred hhhHHHHHhhhccchHHHHH-HHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH-
Confidence 2 1122233333322 233333322211 1112233444554433 122245 8999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||.+.+++.++|+ ++|+.+ ..+++.++.+-. +++++++|+ |....++.+|+++++++|+
T Consensus 485 ------lAR~LL~dapl~lLDEPTegLD~~T---E~~vL~ll~~~~-~~kTll~vT-----HrL~~le~~drIivl~~Gk 549 (573)
T COG4987 485 ------LARALLHDAPLWLLDEPTEGLDPIT---ERQVLALLFEHA-EGKTLLMVT-----HRLRGLERMDRIIVLDNGK 549 (573)
T ss_pred ------HHHHHHcCCCeEEecCCcccCChhh---HHHHHHHHHHHh-cCCeEEEEe-----cccccHhhcCEEEEEECCe
Confidence 99999999999999 899876 677777765543 378999999 7788888889999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
+++.|...++
T Consensus 550 iie~G~~~~L 559 (573)
T COG4987 550 IIEEGTHAEL 559 (573)
T ss_pred eeecCCHHhh
Confidence 9998876554
No 303
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.72 E-value=1.8e-17 Score=152.04 Aligned_cols=176 Identities=19% Similarity=0.273 Sum_probs=116.7
Q ss_pred eeeeeecCC-----cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEe--cC--c
Q 016165 176 EVTYRFNDF-----VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMS--GV--D 244 (394)
Q Consensus 176 ~~~~~~~~~-----~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~--~~--~ 244 (394)
++++.|+.. ...++++++|++.+ +++|+|+||||||||+++|+|... |..++ +.+. +. +
T Consensus 6 ~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--------~~~G~--i~~~~~g~~~~ 75 (224)
T TIGR02324 6 DLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--------PDSGR--ILVRHEGAWVD 75 (224)
T ss_pred eeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCCe--EEEecCCCccc
Confidence 455567421 13589999999887 999999999999999999999983 33333 2222 11 1
Q ss_pred ccc----------cCCceeeeccCCCCCcccccccccc-------hhhhhhcCCccccccceeec-----CCCCCc-hhh
Q 016165 245 DRS----------IPGNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD-----TPGVLS-GEK 301 (394)
Q Consensus 245 ~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~ 301 (394)
... ..+..+.++....+...+...+... ......+.+.++++.+++.+ .+..+| ||+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 76 LAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQ 155 (224)
T ss_pred hhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHH
Confidence 100 1134445555443444333333211 01112234456666666642 567788 999
Q ss_pred hhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHh
Q 016165 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGAL 375 (394)
Q Consensus 302 qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~ 375 (394)
||+. +|++++.+|+++|+ .+|+.. ...+.++++.+++++.++++++ |+.+.+..+ ++++
T Consensus 156 qrl~-------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~g~tii~vs-----H~~~~~~~~~d~i~ 220 (224)
T TIGR02324 156 QRVN-------IARGFIADYPILLLDEPTASLDAAN---RQVVVELIAEAKARGAALIGIF-----HDEEVRELVADRVM 220 (224)
T ss_pred HHHH-------HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhcceeE
Confidence 9999 99999999999999 888876 7888899998877788888888 777766554 6554
Q ss_pred h
Q 016165 376 M 376 (394)
Q Consensus 376 ~ 376 (394)
.
T Consensus 221 ~ 221 (224)
T TIGR02324 221 D 221 (224)
T ss_pred e
Confidence 3
No 304
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.72 E-value=1.6e-17 Score=152.63 Aligned_cols=181 Identities=17% Similarity=0.253 Sum_probs=117.1
Q ss_pred ceeeeeecCCc-CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 175 LEVTYRFNDFV-SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 175 l~~~~~~~~~~-~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
-++++.|++.. ..+++++++++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+...
T Consensus 15 ~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------~~~G~--i~~~g~~~~~~~~~ 84 (226)
T cd03248 15 QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--------PQGGQ--VLLDGKPISQYEHK 84 (226)
T ss_pred EEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--------CCCcE--EEECCCchHHcCHH
Confidence 45566775421 3589999999887 999999999999999999999984 22332 2223322111
Q ss_pred --cCCceeeeccCCCCCcccccccccch----------hhhhhcCCccccccc--eeec----CCCCCc-hhhhhhhccc
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLS----------KFECSQMPHSLLEHI--TLVD----TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~--~l~D----t~g~ls-Ge~qrv~~~~ 308 (394)
.....+.++....+.+ +...+..+. .......+.++++.+ ++.+ .+..+| ||+||+.
T Consensus 85 ~~~~~i~~~~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~--- 160 (226)
T cd03248 85 YLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA--- 160 (226)
T ss_pred HHHhhEEEEecccHHHhh-hHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH---
Confidence 0122333333322221 222222100 000111233445554 4432 577888 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+|++++.+|+++|+ .+|+.. ...+.++++.+.+ +.++++++ |+.+.+..+++++.+++|++
T Consensus 161 ----laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tii~~s-----h~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 161 ----IARALIRNPQVLILDEATSALDAES---EQQVQQALYDWPE-RRTVLVIA-----HRLSTVERADQILVLDGGRI 226 (226)
T ss_pred ----HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHcC-CCEEEEEE-----CCHHHHHhCCEEEEecCCcC
Confidence 99999999999999 888876 7888888988865 56777777 77777755588888888864
No 305
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.72 E-value=6.9e-18 Score=179.28 Aligned_cols=193 Identities=17% Similarity=0.278 Sum_probs=132.5
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--+++++|++..+.+++++++++++ .++|+|+||||||||+|+|+|.+ .|..|+ +.+++.+...+
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~--------~p~~G~--I~idg~~i~~~~ 525 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY--------TPQHGQ--VLVDGVDLAIAD 525 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCce--EEECCEehhhCC
Confidence 344566788865335699999999977 99999999999999999999999 444555 44455443332
Q ss_pred -----CCceeeeccCCCCCcccccccccchh--h---hhhc-----CCccccccc------eeecCCCCCc-hhhhhhhc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSK--F---ECSQ-----MPHSLLEHI------TLVDTPGVLS-GEKQRTQR 306 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~--~---~~~~-----~~~~~l~~~------~l~Dt~g~ls-Ge~qrv~~ 306 (394)
....++.|+...|.+ +..+|..+.. . +..+ -..+.+..+ .+.+....+| ||+||+.
T Consensus 526 ~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~- 603 (694)
T TIGR01846 526 PAWLRRQMGVVLQENVLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIA- 603 (694)
T ss_pred HHHHHHhCeEEccCCeehhh-hHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHH-
Confidence 235566677666665 3344442211 0 0000 011111111 1222345577 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++++|+++|+ .+|..+ ...+.+.++.+. .+.++|+++ |+.+.+..+|+++++++|+
T Consensus 604 ------lARall~~~~ililDEpts~LD~~~---~~~i~~~l~~~~-~~~t~i~it-----H~~~~~~~~d~ii~l~~G~ 668 (694)
T TIGR01846 604 ------IARALVGNPRILIFDEATSALDYES---EALIMRNMREIC-RGRTVIIIA-----HRLSTVRACDRIIVLEKGQ 668 (694)
T ss_pred ------HHHHHHhCCCEEEEECCCcCCCHHH---HHHHHHHHHHHh-CCCEEEEEe-----CChHHHHhCCEEEEEeCCE
Confidence 99999999999999 777765 677778887774 467888888 6677777679999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
+++.|+..++
T Consensus 669 i~~~g~~~~l 678 (694)
T TIGR01846 669 IAESGRHEEL 678 (694)
T ss_pred EEEeCCHHHH
Confidence 9988765543
No 306
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.72 E-value=6.5e-18 Score=191.80 Aligned_cols=192 Identities=17% Similarity=0.208 Sum_probs=137.6
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC-
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP- 249 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~- 249 (394)
+.-+++++|.+....+|+|++|++++ +|||+|++|||||||+++|+|.. .|..|+ |.++|.+...++
T Consensus 1286 ~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~--------~~~~G~--I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957 1286 EFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN--------ESAEGE--IIIDGLNIAKIGL 1355 (1522)
T ss_pred EEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--------cCCCCe--EEECCEEccccCH
Confidence 33467788875434699999999988 99999999999999999999998 455555 555666655443
Q ss_pred -----CceeeeccCCCCCccccccccc-chhhhhhcCCccccccceee----------c-----CCCCCc-hhhhhhhcc
Q 016165 250 -----GNTVAVQADMPFSGLTTFGTAF-LSKFECSQMPHSLLEHITLV----------D-----TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 250 -----~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----------D-----t~g~ls-Ge~qrv~~~ 307 (394)
..+++.|+.+.|.| +...|.. .....+. ...++++..++. | ....+| ||+||+.
T Consensus 1356 ~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~sde-ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~-- 1431 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFSG-SLRMNLDPFSQYSDE-EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC-- 1431 (1522)
T ss_pred HHHHhcCeEECCCCcccCc-cHHHHcCcccCCCHH-HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH--
Confidence 56678888888887 4555542 1111111 111122222221 2 223467 8999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++++|+++|+ .+|..+ ...+.+.|++.. +++++|+|. |..+.+..+|+++++++|++
T Consensus 1432 -----LARALLr~~~ILiLDEaTSalD~~T---e~~Iq~~l~~~~-~~~TvI~IA-----HRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1432 -----LARALLRKTKILVLDEATAAVDLET---DNLIQSTIRTQF-EDCTVLTIA-----HRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred -----HHHHHHcCCCEEEEECCcccCCHHH---HHHHHHHHHHHc-CCCEEEEEe-----cCHHHHHhCCEEEEEECCEE
Confidence 99999999999999 777765 556667776653 368889998 77778888899999999999
Q ss_pred eecCccceee
Q 016165 383 LNTPEVVRVY 392 (394)
Q Consensus 383 ~~~~~~~~v~ 392 (394)
++.|...+++
T Consensus 1498 vE~G~~~eLl 1507 (1522)
T TIGR00957 1498 AEFGAPSNLL 1507 (1522)
T ss_pred EEECCHHHHH
Confidence 9988776653
No 307
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.72 E-value=1.2e-17 Score=175.65 Aligned_cols=192 Identities=20% Similarity=0.262 Sum_probs=138.3
Q ss_pred ceeeeeecCC--cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---
Q 016165 175 LEVTYRFNDF--VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--- 247 (394)
Q Consensus 175 l~~~~~~~~~--~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--- 247 (394)
-++++.|++. ...++++++|++.+ +++|+|+||+|||||+++|+|... |..++ +.+++++...
T Consensus 8 ~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--------~~~G~--i~~~g~~i~~~~~ 77 (648)
T PRK10535 8 KDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--------PTSGT--YRVAGQDVATLDA 77 (648)
T ss_pred eeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCeE--EEECCEEcCcCCH
Confidence 3456677531 13589999999887 999999999999999999999983 43444 3344443221
Q ss_pred -------cCCceeeeccCCCCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhccc
Q 016165 248 -------IPGNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 -------~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~ 308 (394)
.....+.++....+.+.+..++..+ ...+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 78 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~--- 154 (648)
T PRK10535 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVS--- 154 (648)
T ss_pred HHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHH---
Confidence 1234556666555555544443321 11233445566777777654 678889 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVL 383 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ .+|+.. .+.+.++++++++++.++++++ |+.+.+..+|+++++++|+++
T Consensus 155 ----LAraL~~~P~lLllDEP~~gLD~~s---~~~l~~ll~~l~~~g~tilivs-----H~~~~~~~~d~i~~l~~G~i~ 222 (648)
T PRK10535 155 ----IARALMNGGQVILADEPTGALDSHS---GEEVMAILHQLRDRGHTVIIVT-----HDPQVAAQAERVIEIRDGEIV 222 (648)
T ss_pred ----HHHHHhcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhcCCEEEEEC-----CCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999 888876 7888899998877778888888 666666545999999999999
Q ss_pred ecCcccee
Q 016165 384 NTPEVVRV 391 (394)
Q Consensus 384 ~~~~~~~v 391 (394)
..++..+.
T Consensus 223 ~~g~~~~~ 230 (648)
T PRK10535 223 RNPPAQEK 230 (648)
T ss_pred eecCcccc
Confidence 88877654
No 308
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.72 E-value=1e-17 Score=190.09 Aligned_cols=191 Identities=18% Similarity=0.179 Sum_probs=141.8
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc----
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---- 246 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---- 246 (394)
+--++++.|++..+.+++++++++.+ +++|+|+||||||||+++|+|... |..|. +.+.+.+..
T Consensus 930 ~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--------PtsG~--I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 930 CVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--------PTSGT--VLVGGKDIETNLD 999 (2272)
T ss_pred EEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--------CCceE--EEECCEECcchHH
Confidence 33455667752225699999998877 999999999999999999999983 33343 222332221
Q ss_pred -ccCCceeeeccCCCCCcccccccccc-h------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 247 -SIPGNTVAVQADMPFSGLTTFGTAFL-S------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 247 -~~~~~~~~~~~~~~~~g~~~~~~~~~-~------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
......+.+|....+..++..++..+ . ..+..+.+.++++.+++.+ .++.+| ||+||+. +
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLs-------L 1072 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLS-------V 1072 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------H
Confidence 11234556666666666666666521 1 1123345677888888865 688899 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
|++++.+|+++|+ ++|+.. .+.+.++|++++ ++.++|+++ |+.+++..+ |+++++++|+++..|.
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~s---r~~l~~lL~~l~-~g~TIIltT-----Hdmdea~~laDrI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYS---RRSIWDLLLKYR-SGRTIIMST-----HHMDEADLLGDRIAIISQGRLYCSGT 1143 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHH---HHHHHHHHHHHh-CCCEEEEEE-----CCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999 889876 888899999985 477777777 888888887 9999999999988776
Q ss_pred cc
Q 016165 388 VV 389 (394)
Q Consensus 388 ~~ 389 (394)
..
T Consensus 1144 ~~ 1145 (2272)
T TIGR01257 1144 PL 1145 (2272)
T ss_pred HH
Confidence 54
No 309
>PTZ00243 ABC transporter; Provisional
Probab=99.71 E-value=9.5e-18 Score=190.25 Aligned_cols=194 Identities=18% Similarity=0.188 Sum_probs=137.7
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++.-+++++|.+....+|+|++|++++ +|||+|++|||||||+++|+|.. .|..|+ |.++|.+...+
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~--------~p~~G~--I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV--------EVCGGE--IRVNGREIGAYG 1378 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcE--EEECCEEcccCC
Confidence 555677888876445699999999988 99999999999999999999999 455555 45566655443
Q ss_pred -----CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceee----------cC-----CCCCc-hhhhhhhcc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----------DT-----PGVLS-GEKQRTQRA 307 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------Dt-----~g~ls-Ge~qrv~~~ 307 (394)
...++++|+.+.|.| +...|+........+...++++..++. || -.-+| ||+||+.
T Consensus 1379 l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLa-- 1455 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMC-- 1455 (1560)
T ss_pred HHHHHhcceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHH--
Confidence 356778888888877 455554211110111122222222222 21 23467 9999999
Q ss_pred cChHHHHHHHhhc-CCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 308 YDFTGVTSWFAAK-CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 308 ~~~~~iaral~~~-~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++++ |+++|+ .+|... ...+.+.|+... +++++|+|. |..+.+..+|++++|++|+
T Consensus 1456 -----LARALL~~~~~ILlLDEATSaLD~~t---e~~Iq~~L~~~~-~~~TvI~IA-----HRl~ti~~~DrIlVLd~G~ 1521 (1560)
T PTZ00243 1456 -----MARALLKKGSGFILMDEATANIDPAL---DRQIQATVMSAF-SAYTVITIA-----HRLHTVAQYDKIIVMDHGA 1521 (1560)
T ss_pred -----HHHHHhcCCCCEEEEeCCCccCCHHH---HHHHHHHHHHHC-CCCEEEEEe-----ccHHHHHhCCEEEEEECCE
Confidence 99999996 899999 677665 566667776653 367888888 7777888889999999999
Q ss_pred eeecCccceee
Q 016165 382 VLNTPEVVRVY 392 (394)
Q Consensus 382 i~~~~~~~~v~ 392 (394)
+++.|...++.
T Consensus 1522 VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1522 VAEMGSPRELV 1532 (1560)
T ss_pred EEEECCHHHHH
Confidence 99988766543
No 310
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=6.6e-18 Score=144.51 Aligned_cols=183 Identities=16% Similarity=0.209 Sum_probs=121.8
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--ccC----Cceeeecc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--SIP----GNTVAVQA 257 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--~~~----~~~~~~~~ 257 (394)
..+++.++|+... .+|++|.||||||||.++|+|... |+.++ +.+++.... ++. .....+++
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--------PTsG~--il~n~~~L~~~Dy~~R~k~IRMiFQD 95 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--------PTSGE--ILINDHPLHFGDYSFRSKRIRMIFQD 95 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--------CCCce--EEECCccccccchHhhhhheeeeecC
Confidence 3477888887765 999999999999999999999993 33444 222222111 000 00011222
Q ss_pred CCC-CCcccccccc---------cchhhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHHhhcC
Q 016165 258 DMP-FSGLTTFGTA---------FLSKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (394)
Q Consensus 258 ~~~-~~g~~~~~~~---------~~~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~ 321 (394)
... ++.....+.+ .+......+++.+.|..+++. | .|..++ |++|||+ +||+++.+|
T Consensus 96 pnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa-------LARALIL~P 168 (267)
T COG4167 96 PNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA-------LARALILRP 168 (267)
T ss_pred CccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH-------HHHHHhcCC
Confidence 111 1111111111 122223344455666677764 4 566677 9999999 999999999
Q ss_pred CEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceeec
Q 016165 322 DLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 322 dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~~ 393 (394)
.+||. .+|.+- ..++..+.-+|.+ .|...|.|. .+...+..+ |.+++|++|++++.|.+.++|+
T Consensus 169 ~iIIaDeAl~~LD~sm---rsQl~NL~LeLQek~GiSyiYV~-----QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 169 KIIIADEALASLDMSM---RSQLINLMLELQEKQGISYIYVT-----QHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred cEEEehhhhhhccHHH---HHHHHHHHHHHHHHhCceEEEEe-----chhhHhhhhcccEEEEecCceeecCChhhhhc
Confidence 99998 777765 7778888777765 488888888 445566667 9999999999999999988875
No 311
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.71 E-value=1.1e-17 Score=174.61 Aligned_cols=191 Identities=18% Similarity=0.293 Sum_probs=128.9
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++.-++++.|++. ..+++++++++++ +++|+|+||||||||++.|+|.. .|..+. +.+++.+...+
T Consensus 335 I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~--------~p~~G~--I~i~g~~i~~~~ 403 (588)
T PRK13657 335 VEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF--------DPQSGR--ILIDGTDIRTVT 403 (588)
T ss_pred EEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc--------CCCCCE--EEECCEEhhhCC
Confidence 4445667788642 4589999999888 99999999999999999999999 344444 33444443332
Q ss_pred -----CCceeeeccCCCCCcccccccccchhh-hhhcCCcccccccee---------------ecCCCCCc-hhhhhhhc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHITL---------------VDTPGVLS-GEKQRTQR 306 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~l---------------~Dt~g~ls-Ge~qrv~~ 306 (394)
....++.|+...|.| +..+|..+.+. ...+...++++.+++ .+....+| ||+||++
T Consensus 404 ~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia- 481 (588)
T PRK13657 404 RASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA- 481 (588)
T ss_pred HHHHHhheEEEecCcccccc-cHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH-
Confidence 245566777777765 34444422211 001111111111111 12223477 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++++|+++|+ .+|... ...+.+.+..+. +++++|+|+ |+.+.+..+|+++.+++|+
T Consensus 482 ------lARall~~~~iliLDEpts~LD~~t---~~~i~~~l~~~~-~~~tvIiit-----Hr~~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 482 ------IARALLKDPPILILDEATSALDVET---EAKVKAALDELM-KGRTTFIIA-----HRLSTVRNADRILVFDNGR 546 (588)
T ss_pred ------HHHHHhcCCCEEEEeCCccCCCHHH---HHHHHHHHHHHh-cCCEEEEEE-----ecHHHHHhCCEEEEEECCE
Confidence 99999999999999 777765 666777776664 367888888 7777776679999999999
Q ss_pred eeecCccce
Q 016165 382 VLNTPEVVR 390 (394)
Q Consensus 382 i~~~~~~~~ 390 (394)
++..|...+
T Consensus 547 i~~~g~~~~ 555 (588)
T PRK13657 547 VVESGSFDE 555 (588)
T ss_pred EEEeCCHHH
Confidence 997765433
No 312
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=1e-17 Score=178.97 Aligned_cols=196 Identities=18% Similarity=0.223 Sum_probs=142.0
Q ss_pred HHhcCCceeeeeecCCc-CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcc
Q 016165 169 IQKLKPLEVTYRFNDFV-SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD 245 (394)
Q Consensus 169 ~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~ 245 (394)
...++.-++.|+|+... ..++++++|.+++ .|+|||++||||||+++.|.+.+ .|..+. |.++|.+.
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy--------dP~~G~--V~idG~di 417 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY--------DPTSGE--VLIDGEDI 417 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc--------CCCCce--EEEcCccc
Confidence 34466677888887643 3699999999988 99999999999999999999999 566666 55566665
Q ss_pred ccc------CCceeeeccCCCCCcccccccccchh-----hhhhcC---C------ccccccc--eeecCCCCCc-hhhh
Q 016165 246 RSI------PGNTVAVQADMPFSGLTTFGTAFLSK-----FECSQM---P------HSLLEHI--TLVDTPGVLS-GEKQ 302 (394)
Q Consensus 246 ~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~---~------~~~l~~~--~l~Dt~g~ls-Ge~q 302 (394)
..+ ...+++.|+++.|.. +..+|+.+.+ .+..+. + ..+.+.+ .+-+.-.++| ||+|
T Consensus 418 ~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQ 496 (1228)
T KOG0055|consen 418 RNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQ 496 (1228)
T ss_pred hhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHH
Confidence 433 355667788876643 4555553222 111111 1 1111111 1223445688 8999
Q ss_pred hhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhh
Q 016165 303 RTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMW 377 (394)
Q Consensus 303 rv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~ 377 (394)
|++ |||+++++|+++|| .||+.+ ...+.+.|+...+ |.+.|+|. |....+...|+++++
T Consensus 497 RIA-------IARalv~~P~ILLLDEaTSaLD~~s---e~~Vq~ALd~~~~-grTTivVa-----HRLStIrnaD~I~v~ 560 (1228)
T KOG0055|consen 497 RIA-------IARALVRNPKILLLDEATSALDAES---ERVVQEALDKASK-GRTTIVVA-----HRLSTIRNADKIAVM 560 (1228)
T ss_pred HHH-------HHHHHHhCCCEEEecCcccccCHHH---HHHHHHHHHHhhc-CCeEEEEe-----eehhhhhccCEEEEE
Confidence 999 99999999999999 888876 6667777777654 67888888 888888888999999
Q ss_pred ccceeeecCcccee
Q 016165 378 SLGKVLNTPEVVRV 391 (394)
Q Consensus 378 ~~G~i~~~~~~~~v 391 (394)
++|++++.|...++
T Consensus 561 ~~G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 561 EEGKIVEQGTHDEL 574 (1228)
T ss_pred ECCEEEEecCHHHH
Confidence 99999998877654
No 313
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.71 E-value=2.2e-17 Score=171.01 Aligned_cols=186 Identities=15% Similarity=0.194 Sum_probs=123.7
Q ss_pred cCCceeeeeecCC---cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc
Q 016165 172 LKPLEVTYRFNDF---VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR 246 (394)
Q Consensus 172 ~~~l~~~~~~~~~---~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~ 246 (394)
++--++++.|++. ...+++++++++++ +++|+||||||||||+|+|+|.. .|..|+ +.+++.+..
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~--------~p~~G~--i~~~g~~i~ 407 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY--------IPQEGE--ILLDGAAVS 407 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCcE--EEECCEECC
Confidence 3334667788652 12589999999887 99999999999999999999999 455555 333444333
Q ss_pred cc------CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceee----------cCCCCCc-hhhhhhhcccC
Q 016165 247 SI------PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----------DTPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 247 ~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------Dt~g~ls-Ge~qrv~~~~~ 309 (394)
.+ ....++.++.+.|.+... .+. ......+.+.++++.+++. ||...+| ||+||++
T Consensus 408 ~~~~~~~~~~i~~v~q~~~lf~~ti~-~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRla---- 480 (555)
T TIGR01194 408 ADSRDDYRDLFSAIFADFHLFDDLIG-PDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLA---- 480 (555)
T ss_pred CCCHHHHHhhCcEEccChhhhhhhhh-ccc--ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHH----
Confidence 22 223445566555554322 121 1111112223334444443 3455688 8999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHH-HHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKR-VITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVL 383 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~-~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ .+|+.+ ...+.+ +++.++.+++++|+|+ |+.+.+..+|+++++++|+++
T Consensus 481 ---laRall~~~~ililDE~ts~LD~~~---~~~i~~~l~~~~~~~~~tiiiis-----H~~~~~~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 481 ---LICAWLEDRPILLFDEWAADQDPAF---KRFFYEELLPDLKRQGKTIIIIS-----HDDQYFELADQIIKLAAGCIV 549 (555)
T ss_pred ---HHHHHHcCCCEEEEeCCccCCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----ccHHHHHhCCEEEEEECCEEE
Confidence 99999999999999 677765 555544 3444545678888888 666666666999999999997
Q ss_pred ec
Q 016165 384 NT 385 (394)
Q Consensus 384 ~~ 385 (394)
+.
T Consensus 550 ~~ 551 (555)
T TIGR01194 550 KD 551 (555)
T ss_pred Ee
Confidence 64
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.70 E-value=2.3e-17 Score=170.84 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=119.0
Q ss_pred ceeeeeec-CCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCc
Q 016165 175 LEVTYRFN-DFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGN 251 (394)
Q Consensus 175 l~~~~~~~-~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~ 251 (394)
-++++.|+ + +.++++++|++.+ +++|+|+||||||||+++|+|... |..|...+ ... ...
T Consensus 10 ~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--------p~~G~i~~--~~~-----~~i 72 (556)
T PRK11819 10 NRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--------EFEGEARP--APG-----IKV 72 (556)
T ss_pred eeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCceEEe--cCC-----CEE
Confidence 35566786 5 5699999999888 999999999999999999999984 22222111 000 012
Q ss_pred eeeeccCCCCCcccccccccch--h-----------------------------------------hhhhcCCccccccc
Q 016165 252 TVAVQADMPFSGLTTFGTAFLS--K-----------------------------------------FECSQMPHSLLEHI 288 (394)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~--~-----------------------------------------~~~~~~~~~~l~~~ 288 (394)
.++.+....+..++...+..+. . .+..+.+.++++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 2223332222222222222100 0 00012344556666
Q ss_pred eee--c-CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEec
Q 016165 289 TLV--D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (394)
Q Consensus 289 ~l~--D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK 359 (394)
++. | .++.+| ||+||+. +|++++.+|+++|+ .+|+.. ...+.++++.+ +.++|+++
T Consensus 153 gl~~~~~~~~~LSgGqkqrv~-------la~al~~~p~vlLLDEPt~~LD~~~---~~~l~~~L~~~---~~tviiis-- 217 (556)
T PRK11819 153 RCPPWDAKVTKLSGGERRRVA-------LCRLLLEKPDMLLLDEPTNHLDAES---VAWLEQFLHDY---PGTVVAVT-- 217 (556)
T ss_pred CCCcccCchhhcCHHHHHHHH-------HHHHHhCCCCEEEEcCCCCcCChHH---HHHHHHHHHhC---CCeEEEEe--
Confidence 663 2 678899 9999999 99999999999999 888876 66666777665 24677777
Q ss_pred CCccCHHHHHHH-HhHhhhccceee-ecCcc
Q 016165 360 ADQVDTQQLMRV-YGALMWSLGKVL-NTPEV 388 (394)
Q Consensus 360 ~Dl~~~~~~~~~-~~~~~~~~G~i~-~~~~~ 388 (394)
|+.+.+..+ ++++.+++|+++ ..++.
T Consensus 218 ---Hd~~~~~~~~d~i~~l~~g~i~~~~g~~ 245 (556)
T PRK11819 218 ---HDRYFLDNVAGWILELDRGRGIPWEGNY 245 (556)
T ss_pred ---CCHHHHHhhcCeEEEEeCCEEEEecCCH
Confidence 888888887 899999999986 44543
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.4e-17 Score=171.69 Aligned_cols=181 Identities=17% Similarity=0.198 Sum_probs=121.7
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++ +.++++++|++.. +++|+|+||||||||+++|+|... |..+.. .+.+. ....+
T Consensus 324 ~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--------p~~G~i--~~~~~-----~~i~~ 386 (530)
T PRK15064 324 NLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--------PDSGTV--KWSEN-----ANIGY 386 (530)
T ss_pred eeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCeEE--EECCc-----eEEEE
Confidence 45667765 5689999999887 999999999999999999999984 323321 11111 01222
Q ss_pred eeccCC--CCCccccccccc-ch-hhhhhcCCccccccceee----c-CCCCCc-hhhhhhhcccChHHHHHHHhhcCCE
Q 016165 254 AVQADM--PFSGLTTFGTAF-LS-KFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (394)
Q Consensus 254 ~~~~~~--~~~g~~~~~~~~-~~-~~~~~~~~~~~l~~~~l~----D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dl 323 (394)
..+... .+...+...+.. +. .....+.+.++++.+++. + .++.+| ||+||+. +|++++.+|++
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~-------la~al~~~p~l 459 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRML-------FGKLMMQKPNV 459 (530)
T ss_pred EcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHH-------HHHHHhcCCCE
Confidence 222211 111222222221 10 011123345667777663 2 689999 9999999 99999999999
Q ss_pred EEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee-ecCcccee
Q 016165 324 ILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL-NTPEVVRV 391 (394)
Q Consensus 324 lLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~-~~~~~~~v 391 (394)
+|+ .+|+.. ...+.++++.+ +.++|+++ |+.+.+..+ ++++.+++|+++ ..++..++
T Consensus 460 llLDEPt~~LD~~~---~~~l~~~l~~~---~~tvi~vs-----Hd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 460 LVMDEPTNHMDMES---IESLNMALEKY---EGTLIFVS-----HDREFVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred EEEcCCCCCCCHHH---HHHHHHHHHHC---CCEEEEEe-----CCHHHHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 999 888776 66777777665 34777777 888888886 999999999997 66655443
No 316
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3.3e-17 Score=167.36 Aligned_cols=177 Identities=16% Similarity=0.249 Sum_probs=121.3
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-------cCCceeeecc
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-------IPGNTVAVQA 257 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-------~~~~~~~~~~ 257 (394)
.++++++|++.. +++|+|+||||||||+++|+|... |..+. +.+.+.+... ..+..+..+.
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~i~~~~~~~~~~~~i~~~~q~ 331 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--------KSAGT--ITLHGKKINNHNANEAINHGFALVTEE 331 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--------CCccE--EEECCEECCCCCHHHHHHCCCEEcCCc
Confidence 489999988877 999999999999999999999984 33333 2222221110 0112222222
Q ss_pred C---CCCCccccccc-----c-c-------chhhhhhcCCccccccceee----c-CCCCCc-hhhhhhhcccChHHHHH
Q 016165 258 D---MPFSGLTTFGT-----A-F-------LSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 258 ~---~~~~g~~~~~~-----~-~-------~~~~~~~~~~~~~l~~~~l~----D-t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
. ..+...+...+ . + .......+.+.++++.+++. | .++.+| ||+||+. +|+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~-------la~ 404 (491)
T PRK10982 332 RRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVI-------IGR 404 (491)
T ss_pred hhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHH-------HHH
Confidence 1 01111111100 0 0 01111223345566666663 2 688999 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
+++.+|+++|+ ++|+.. ...+.++++.+.+.+.++|+++ |+.+.+..+ ++++++++|+++..++.
T Consensus 405 al~~~p~illLDEPt~gLD~~~---~~~~~~~l~~l~~~~~tvi~vs-----Hd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 405 WLLTQPEILMLDEPTRGIDVGA---KFEIYQLIAELAKKDKGIIIIS-----SEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHhcCCCEEEEcCCCcccChhH---HHHHHHHHHHHHHCCCEEEEEC-----CChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 99999999999 899887 8889999999887788888888 888888887 99999999999865443
No 317
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.70 E-value=2e-17 Score=172.32 Aligned_cols=192 Identities=20% Similarity=0.298 Sum_probs=127.5
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--++++.|++. +.+++++++++++ +++|+|+||||||||+++|+|... |..+. +.+++.+...+
T Consensus 335 i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--------~~~G~--i~~~g~~~~~~~ 403 (585)
T TIGR01192 335 VEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--------PTVGQ--ILIDGIDINTVT 403 (585)
T ss_pred EEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--------CCCCE--EEECCEEhhhCC
Confidence 3344667788642 3589999999887 999999999999999999999993 44444 33333332221
Q ss_pred -----CCceeeeccCCCCCcccccccccchh-----hhhhcC-----Cccccccc--e----eecCCCCCc-hhhhhhhc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSK-----FECSQM-----PHSLLEHI--T----LVDTPGVLS-GEKQRTQR 306 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~-----~~~~l~~~--~----l~Dt~g~ls-Ge~qrv~~ 306 (394)
....++.|+...+.+ +..+|..+.. .+..+. ..+.+..+ + +.+....+| ||+||+.
T Consensus 404 ~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~- 481 (585)
T TIGR01192 404 RESLRKSIATVFQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA- 481 (585)
T ss_pred HHHHHhheEEEccCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHH-
Confidence 234456666665554 3444432211 011100 11111111 1 122345678 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++++|+++|+ .+|... ...+.+.++.+.+ +.++|+|+ |+.+.+..+|+++.+++|+
T Consensus 482 ------lARall~~p~ililDEpts~LD~~~---~~~i~~~l~~~~~-~~tvI~is-----H~~~~~~~~d~i~~l~~G~ 546 (585)
T TIGR01192 482 ------IARAILKNAPILVLDEATSALDVET---EARVKNAIDALRK-NRTTFIIA-----HRLSTVRNADLVLFLDQGR 546 (585)
T ss_pred ------HHHHHhcCCCEEEEECCccCCCHHH---HHHHHHHHHHHhC-CCEEEEEE-----cChHHHHcCCEEEEEECCE
Confidence 99999999999999 788765 6777787877643 67888888 6677776679999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
++..|+..++
T Consensus 547 i~~~g~~~~l 556 (585)
T TIGR01192 547 LIEKGSFQEL 556 (585)
T ss_pred EEEECCHHHH
Confidence 9987765443
No 318
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.70 E-value=2.3e-17 Score=171.82 Aligned_cols=192 Identities=17% Similarity=0.319 Sum_probs=128.9
Q ss_pred cCCceeeeeecCCc-CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc
Q 016165 172 LKPLEVTYRFNDFV-SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~-~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~ 248 (394)
++--+++++|++.. +.+++++++++++ .++|+|+||+|||||+++|+|... |..|. +.+++.+...+
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--------p~~G~--I~i~g~~i~~~ 407 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--------PQSGR--ILLDGVDLRQL 407 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--------CCCCE--EEECCEEHHhc
Confidence 44456677886421 4589999999888 999999999999999999999993 44443 33344332222
Q ss_pred ------CCceeeeccCCCCCcccccccccchhh-hhhcCC---------ccccccc--e----eecCCCCCc-hhhhhhh
Q 016165 249 ------PGNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMP---------HSLLEHI--T----LVDTPGVLS-GEKQRTQ 305 (394)
Q Consensus 249 ------~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~---------~~~l~~~--~----l~Dt~g~ls-Ge~qrv~ 305 (394)
...++..|+.+.|++ +..+|..+... ...+.. .+.++.+ + +.+....+| ||+||+.
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred CHHHHHHhceEEccCCccccc-cHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 245667777777765 33334322110 001111 1112211 1 112223467 8999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+||+++++|+++|+ .+|... .+.+.+.++.+.+ ++++|+|+ |+.+.+..+|+++.+.+|
T Consensus 487 -------laRal~~~~~ililDEpts~lD~~~---~~~i~~~l~~~~~-~~t~Iiit-----H~~~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 487 -------IARAILKDAPILLLDEATSALDAES---EQLVQQALETLMK-GRTTLIIA-----HRLATVLKADRIVVMDQG 550 (576)
T ss_pred -------HHHHHHhCCCeEEEeCcccccCHHH---HHHHHHHHHHHhC-CCEEEEEe-----cchHHHHhCCEEEEEECC
Confidence 99999999999999 778765 6677777877753 67888888 667676667999999999
Q ss_pred eeeecCccce
Q 016165 381 KVLNTPEVVR 390 (394)
Q Consensus 381 ~i~~~~~~~~ 390 (394)
+++..|...+
T Consensus 551 ~~~~~g~~~~ 560 (576)
T TIGR02204 551 RIVAQGTHAE 560 (576)
T ss_pred EEEeeecHHH
Confidence 9998776543
No 319
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.70 E-value=3.6e-17 Score=152.69 Aligned_cols=183 Identities=21% Similarity=0.162 Sum_probs=116.2
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeE----E-----EEecC
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFV----V-----VMSGV 243 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~----i-----~~~~~ 243 (394)
.+++++|++. ..+++++++ +.+ +++|+|+||||||||+++|+|... |..++.. + .+.+.
T Consensus 4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--------p~~G~I~~~~~~~~~~~~~~g~ 73 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK--------PNLGKFDDPPDWDEILDEFRGS 73 (255)
T ss_pred cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC--------CCCceEeeccccchhhhhccCc
Confidence 3556778652 248999985 544 999999999999999999999994 3233211 0 01222
Q ss_pred cccccC--------CceeeeccCCCCCccccccccc--chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhccc
Q 016165 244 DDRSIP--------GNTVAVQADMPFSGLTTFGTAF--LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 244 ~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~ 308 (394)
+..... ...+.++....+.. +..++.. +........+.++++.+++.+ .+..+| ||+||+.
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~--- 149 (255)
T cd03236 74 ELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVA--- 149 (255)
T ss_pred hhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH---
Confidence 211100 00111111111111 1111110 111222344566777777754 567788 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+|++++.+|+++|+ .+|+.. ...+.++++++.+.+.++|++. |+.+.+..+ ++++.++ |++
T Consensus 150 ----laral~~~p~illlDEPts~LD~~~---~~~l~~~l~~l~~~~~tIIiiS-----Hd~~~~~~~ad~i~~l~-~~~ 216 (255)
T cd03236 150 ----IAAALARDADFYFFDEPSSYLDIKQ---RLNAARLIRELAEDDNYVLVVE-----HDLAVLDYLSDYIHCLY-GEP 216 (255)
T ss_pred ----HHHHHHhCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhcCCEEEEEE-----CCHHHHHHhCCEEEEEC-CCC
Confidence 99999999999999 777765 6778889998877678888888 888888775 8887774 555
Q ss_pred ee
Q 016165 383 LN 384 (394)
Q Consensus 383 ~~ 384 (394)
.+
T Consensus 217 ~~ 218 (255)
T cd03236 217 GA 218 (255)
T ss_pred Cc
Confidence 44
No 320
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.69 E-value=2.3e-17 Score=168.47 Aligned_cols=187 Identities=12% Similarity=0.150 Sum_probs=123.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... + +..++ +.+.+....
T Consensus 264 ~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~----~~~G~--i~~~g~~~~~~~~~~ 332 (490)
T PRK10938 264 NNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---Q----GYSND--LTLFGRRRGSGETIW 332 (490)
T ss_pred eceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---c----ccCCe--EEEecccCCCCCCHH
Confidence 345667766 4589999999887 999999999999999999999652 1 01222 222222110
Q ss_pred -ccCCceeeeccCCCCCc--cccccccc---------ch--hhhhhcCCccccccceeec-----CCCCCc-hhhhhhhc
Q 016165 247 -SIPGNTVAVQADMPFSG--LTTFGTAF---------LS--KFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQR 306 (394)
Q Consensus 247 -~~~~~~~~~~~~~~~~g--~~~~~~~~---------~~--~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~ 306 (394)
......+..+....+.. .+...... .. .....+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 333 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~- 411 (490)
T PRK10938 333 DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLAL- 411 (490)
T ss_pred HHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHH-
Confidence 00122333332211110 11111100 00 0112334567777777753 568899 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCC-eEEEEEecCCccCHHHHHH-H-HhHhhhc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDD-KIRVVLNKADQVDTQQLMR-V-YGALMWS 378 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~-~viiv~nK~Dl~~~~~~~~-~-~~~~~~~ 378 (394)
+|++++.+|+++|+ ++|+.. ...+.++|+++++++. ++|+++ |+.+.+.. + +++++++
T Consensus 412 ------la~al~~~p~lllLDEPt~gLD~~~---~~~l~~~L~~l~~~~~~tviivs-----Hd~~~~~~~~~d~v~~l~ 477 (490)
T PRK10938 412 ------IVRALVKHPTLLILDEPLQGLDPLN---RQLVRRFVDVLISEGETQLLFVS-----HHAEDAPACITHRLEFVP 477 (490)
T ss_pred ------HHHHHhcCCCEEEEcCccccCCHHH---HHHHHHHHHHHHhcCCcEEEEEe-----cchhhhhhhhheeEEEec
Confidence 99999999999999 899876 8888999999877654 577777 77777765 3 8899999
Q ss_pred cceeeecCc
Q 016165 379 LGKVLNTPE 387 (394)
Q Consensus 379 ~G~i~~~~~ 387 (394)
+|+++...+
T Consensus 478 ~G~i~~~~~ 486 (490)
T PRK10938 478 DGDIYRYVQ 486 (490)
T ss_pred CCceEEeec
Confidence 999876543
No 321
>COG1159 Era GTPase [General function prediction only]
Probab=99.69 E-value=1.2e-16 Score=147.44 Aligned_cols=124 Identities=24% Similarity=0.405 Sum_probs=95.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|||+|+||+|||||+|.|.|... +++|+.|.|||..+. |+...++
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~-----------------------GI~t~~~--------- 53 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIR-----------------------GIVTTDN--------- 53 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhhee-----------------------EEEEcCC---------
Confidence 799999999999999999999998 999999999998763 2222222
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
.++.++||||+... +.+..+.+ ...|+..+.++|++|+++|+.. +.......+++.+++...|+++++|
T Consensus 54 -------~QiIfvDTPGih~p-k~~l~~~m--~~~a~~sl~dvDlilfvvd~~~-~~~~~d~~il~~lk~~~~pvil~iN 122 (298)
T COG1159 54 -------AQIIFVDTPGIHKP-KHALGELM--NKAARSALKDVDLILFVVDADE-GWGPGDEFILEQLKKTKTPVILVVN 122 (298)
T ss_pred -------ceEEEEeCCCCCCc-chHHHHHH--HHHHHHHhccCcEEEEEEeccc-cCCccHHHHHHHHhhcCCCeEEEEE
Confidence 27789999999872 33333222 2367778899999999999976 3455566677777775679999999
Q ss_pred cCCccCHHH
Q 016165 359 KADQVDTQQ 367 (394)
Q Consensus 359 K~Dl~~~~~ 367 (394)
|+|....+.
T Consensus 123 KID~~~~~~ 131 (298)
T COG1159 123 KIDKVKPKT 131 (298)
T ss_pred ccccCCcHH
Confidence 999765544
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.69 E-value=1.5e-16 Score=139.99 Aligned_cols=136 Identities=22% Similarity=0.172 Sum_probs=98.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++ ..++++. +++.+ +++|+|+||||||||+|+|+|.. .|..++..+ .+.. ..+
T Consensus 5 ~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~------i~~ 65 (177)
T cd03222 5 DCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL--------IPNGDNDEW--DGIT------PVY 65 (177)
T ss_pred CeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC--------CCCCcEEEE--CCEE------EEE
Confidence 44567876 5577774 66655 99999999999999999999998 344444221 1110 000
Q ss_pred eeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----E
Q 016165 254 AVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----L 327 (394)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~ 327 (394)
+.+.+. +| ||+||+. +||+++.+|+++|+ .
T Consensus 66 ------------------------------------~~q~~~-LSgGq~qrv~-------laral~~~p~lllLDEPts~ 101 (177)
T cd03222 66 ------------------------------------KPQYID-LSGGELQRVA-------IAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred ------------------------------------EcccCC-CCHHHHHHHH-------HHHHHhcCCCEEEEECCccc
Confidence 000111 88 9999999 99999999999999 7
Q ss_pred eCCCCCCchHHHHHHHHHHhcCC-CeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 328 FDPHKLDISDEFKRVITSLRGHD-DKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 328 lD~~~~~~~~~~~~~l~~l~~~~-~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+|... ...+.++++++.+++ .++++++ |+.+.+..+ +++++++++-.
T Consensus 102 LD~~~---~~~l~~~l~~~~~~~~~tiiivs-----H~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 102 LDIEQ---RLNAARAIRRLSEEGKKTALVVE-----HDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHH---HHHHHHHHHHHHHcCCCEEEEEE-----CCHHHHHHhCCEEEEEcCCCc
Confidence 88766 777888888886654 7788887 888888776 88888876543
No 323
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.69 E-value=1.5e-16 Score=139.09 Aligned_cols=151 Identities=19% Similarity=0.118 Sum_probs=99.7
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++. +.+++++++++.+ +++|+|+||||||||+++|+|... |..++.. +.+. ....+
T Consensus 5 ~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~i~--~~~~-----~~i~~ 68 (166)
T cd03223 5 NLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--------WGSGRIG--MPEG-----EDLLF 68 (166)
T ss_pred EEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCceEE--ECCC-----ceEEE
Confidence 455567432 4589999999887 999999999999999999999983 3333321 1111 11223
Q ss_pred eeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----E
Q 016165 254 AVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----L 327 (394)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~ 327 (394)
..+....+ ..+..++. .+. .+..+| ||+||+. +||+++.+|+++|+ .
T Consensus 69 ~~q~~~~~-~~tv~~nl------------------~~~-~~~~LS~G~~~rv~-------laral~~~p~~lllDEPt~~ 121 (166)
T cd03223 69 LPQRPYLP-LGTLREQL------------------IYP-WDDVLSGGEQQRLA-------FARLLLHKPKFVFLDEATSA 121 (166)
T ss_pred ECCCCccc-cccHHHHh------------------hcc-CCCCCCHHHHHHHH-------HHHHHHcCCCEEEEECCccc
Confidence 33332211 11222221 000 467788 9999999 99999999999999 7
Q ss_pred eCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 328 FDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 328 lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+|+.. ...+.++++++ +.++++++ |+.+....+++++.++++
T Consensus 122 LD~~~---~~~l~~~l~~~---~~tiiivs-----h~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 122 LDEES---EDRLYQLLKEL---GITVISVG-----HRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred cCHHH---HHHHHHHHHHh---CCEEEEEe-----CChhHHhhCCEEEEEcCC
Confidence 88765 66677777665 46777777 665544333777666553
No 324
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.69 E-value=3.8e-17 Score=143.74 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=101.4
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC-CceeeeccCCCCC
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP-GNTVAVQADMPFS 262 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~-~~~~~~~~~~~~~ 262 (394)
..++++++|++.+ +++|+||||||||||+|++++.. +. +.+.+....... ...+..+
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~------------G~--v~~~~~~~~~~~~~~~~~~q------ 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYAS------------GK--ARLISFLPKFSRNKLIFIDQ------ 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcC------------Cc--EEECCcccccccccEEEEhH------
Confidence 5689999999888 99999999999999999997421 11 111110000000 0000000
Q ss_pred cccccccccchhhhhhcCCccccccceee-----cCCCCCc-hhhhhhhcccChHHHHHHHhhc--CCEEEE-----EeC
Q 016165 263 GLTTFGTAFLSKFECSQMPHSLLEHITLV-----DTPGVLS-GEKQRTQRAYDFTGVTSWFAAK--CDLILL-----LFD 329 (394)
Q Consensus 263 g~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~--~dllLl-----~lD 329 (394)
.++++.+++. ..+..+| ||+||+. +|++++.+ |+++|+ .+|
T Consensus 68 -------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~-------laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 -------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVK-------LASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred -------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHH-------HHHHHhhCCCCCEEEEeCCcccCC
Confidence 1223344432 2677888 9999999 99999999 999999 788
Q ss_pred CCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCcc
Q 016165 330 PHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEV 388 (394)
Q Consensus 330 ~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~ 388 (394)
... ...+.++++.+++.+.++|+++ |+.+.+...++++.+.+|+....+.+
T Consensus 122 ~~~---~~~l~~~l~~~~~~g~tvIivS-----H~~~~~~~~d~i~~l~~g~~~~~~~~ 172 (176)
T cd03238 122 QQD---INQLLEVIKGLIDLGNTVILIE-----HNLDVLSSADWIIDFGPGSGKSGGKV 172 (176)
T ss_pred HHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHhCCEEEEECCCCCCCCcEE
Confidence 765 7778888888876788888888 66666644588888988766544443
No 325
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.69 E-value=3e-17 Score=185.94 Aligned_cols=190 Identities=21% Similarity=0.216 Sum_probs=135.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC---
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP--- 249 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~--- 249 (394)
-+++++|......+|+|++|++++ +|+|+|++|||||||+++|+|.. . ..|+ |.+++.+...++
T Consensus 1221 ~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~---~------~~G~--I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL---S------TEGE--IQIDGVSWNSVTLQT 1289 (1490)
T ss_pred EEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc---C------CCcE--EEECCEEcccCCHHH
Confidence 466778875446799999999988 99999999999999999999987 2 1233 555666654433
Q ss_pred ---CceeeeccCCCCCcccccccccchhhhhhcCCccccccceeec---------------CCCCCc-hhhhhhhcccCh
Q 016165 250 ---GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD---------------TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 250 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~D---------------t~g~ls-Ge~qrv~~~~~~ 310 (394)
..++++|+.+.|.| +...|.........+...++++.+++.| --.-+| ||+|++.
T Consensus 1290 lR~~is~IpQdp~LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~----- 1363 (1490)
T TIGR01271 1290 WRKAFGVIPQKVFIFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMC----- 1363 (1490)
T ss_pred HHhceEEEeCCCccCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHH-----
Confidence 56678888888887 4555542111111112223333333322 112467 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeec
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNT 385 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~ 385 (394)
+||+++++++++|+ .+|... ...+.+.|+... +++++|+|. |..+.+..+|++++|++|++++.
T Consensus 1364 --LARALLr~~~ILlLDEaTS~lD~~T---e~~I~~~L~~~~-~~~TvI~Ia-----HRl~ti~~~DrIlvL~~G~ivE~ 1432 (1490)
T TIGR01271 1364 --LARSILSKAKILLLDEPSAHLDPVT---LQIIRKTLKQSF-SNCTVILSE-----HRVEALLECQQFLVIEGSSVKQY 1432 (1490)
T ss_pred --HHHHHhCCCCEEEEeCCcccCCHHH---HHHHHHHHHHHc-CCCEEEEEe-----cCHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999 777765 566667776654 368889888 77778888899999999999988
Q ss_pred Cccceee
Q 016165 386 PEVVRVY 392 (394)
Q Consensus 386 ~~~~~v~ 392 (394)
|.+.+++
T Consensus 1433 g~p~~Ll 1439 (1490)
T TIGR01271 1433 DSIQKLL 1439 (1490)
T ss_pred CCHHHHH
Confidence 8766543
No 326
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.69 E-value=1.3e-16 Score=136.16 Aligned_cols=131 Identities=21% Similarity=0.319 Sum_probs=97.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++ ..++++++|++.+ +++|+|+||+|||||+++|+|.. .|..++..+ .++
T Consensus 5 ~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~--------~~~~G~i~~--~~~---------- 62 (144)
T cd03221 5 NLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL--------EPDEGIVTW--GST---------- 62 (144)
T ss_pred EEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--------CCCceEEEE--CCe----------
Confidence 45567766 4689999998887 99999999999999999999998 344444221 110
Q ss_pred eeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----E
Q 016165 254 AVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----L 327 (394)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~ 327 (394)
..+.+... +| ||+||+. +||+++.+|+++|+ .
T Consensus 63 --------------------------------~~i~~~~~---lS~G~~~rv~-------laral~~~p~illlDEP~~~ 100 (144)
T cd03221 63 --------------------------------VKIGYFEQ---LSGGEKMRLA-------LAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred --------------------------------EEEEEEcc---CCHHHHHHHH-------HHHHHhcCCCEEEEeCCccC
Confidence 01111111 78 9999999 99999999999999 7
Q ss_pred eCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 328 FDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 328 lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+|... ...+.++++++ +.++++++ |+.+.+... ++++.+++|+
T Consensus 101 LD~~~---~~~l~~~l~~~---~~til~~t-----h~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 101 LDLES---IEALEEALKEY---PGTVILVS-----HDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCHHH---HHHHHHHHHHc---CCEEEEEE-----CCHHHHHHhCCEEEEEeCCC
Confidence 77765 66677777765 35677777 778887776 8888888775
No 327
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=3.8e-17 Score=143.46 Aligned_cols=174 Identities=18% Similarity=0.249 Sum_probs=123.5
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCC------ceeeecc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPG------NTVAVQA 257 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~------~~~~~~~ 257 (394)
+.+++++++++.. +|.|+|.||||||||+|+|+|.. .|..++ |.+++.+...++. ..+++|+
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l--------~~t~G~--I~Idg~dVtk~~~~~RA~~larVfQd 88 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL--------KPTSGQ--ILIDGVDVTKKSVAKRANLLARVFQD 88 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc--------ccCCce--EEECceecccCCHHHHhhHHHHHhcc
Confidence 5699999998887 99999999999999999999998 444555 4445555444431 2224444
Q ss_pred CCC--CCcccccccccchh-------------hhhhcCCccccccc------eeecCCCCCc-hhhhhhhcccChHHHHH
Q 016165 258 DMP--FSGLTTFGTAFLSK-------------FECSQMPHSLLEHI------TLVDTPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 258 ~~~--~~g~~~~~~~~~~~-------------~~~~~~~~~~l~~~------~l~Dt~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
+.. .+.++..+|..+.. ....+...+.+..+ .+.|..|.+| ||+|.+. ++.
T Consensus 89 p~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals-------L~M 161 (263)
T COG1101 89 PLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS-------LLM 161 (263)
T ss_pred hhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH-------HHH
Confidence 322 33444444442110 01111122222222 2456889999 8999999 899
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+.++.|+++++ .+||.. ...++++-.++.+ .+.+.++|+ |+++++..+ .|.++++.|+|+.
T Consensus 162 Atl~~pkiLLLDEHTAALDPkt---a~~vm~lT~kiV~~~klTtlMVT-----Hnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 162 ATLHPPKILLLDEHTAALDPKT---AEFVMELTAKIVEEHKLTTLMVT-----HNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HhcCCCcEEEecchhhcCCcch---HHHHHHHHHHHHHhcCCceEEEe-----ccHHHHHhhCCeEEEEeCCeEEE
Confidence 99999999999 899987 7778887777654 467899999 899999999 9999999999974
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.68 E-value=4.4e-17 Score=151.44 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=99.7
Q ss_pred ccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccch-h-
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS-K- 274 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~- 274 (394)
+.+++|+|+||||||||+++|+|... |..+. +.+.+. ...+..+........+...+.... .
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~--------p~~G~--i~~~g~------~i~~~~q~~~~~~~~tv~e~l~~~~~~ 88 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLK--------PDEGD--IEIELD------TVSYKPQYIKADYEGTVRDLLSSITKD 88 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--------CCCCe--EEECCc------eEEEecccccCCCCCCHHHHHHHHhhh
Confidence 34999999999999999999999984 22332 111111 111222221111112222221100 0
Q ss_pred h-hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHH
Q 016165 275 F-ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVI 343 (394)
Q Consensus 275 ~-~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l 343 (394)
. .......++++.+++.+ .++.+| ||+||+. +|++++.+|+++|+ .+|+.. ...+.++|
T Consensus 89 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~-------iaraL~~~p~llllDEPt~~LD~~~---~~~l~~~l 158 (246)
T cd03237 89 FYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVA-------IAACLSKDADIYLLDEPSAYLDVEQ---RLMASKVI 158 (246)
T ss_pred ccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHH
Confidence 0 00111344566666643 578889 9999999 99999999999999 888876 77888889
Q ss_pred HHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 344 TSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 344 ~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
+++.++ +.++|+++ |+.+.+..+ +++++++.+
T Consensus 159 ~~~~~~~~~tiiivs-----Hd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 159 RRFAENNEKTAFVVE-----HDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred HHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEcCC
Confidence 888654 77888888 888888876 888888654
No 329
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.68 E-value=9.4e-17 Score=137.55 Aligned_cols=112 Identities=29% Similarity=0.420 Sum_probs=83.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|.||+|||||||+|+|.. ..++..|++|..... |...+++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~---~~v~n~pG~Tv~~~~-----------------------g~~~~~~--------- 46 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK---QKVGNWPGTTVEKKE-----------------------GIFKLGD--------- 46 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS---EEEEESTTSSSEEEE-----------------------EEEEETT---------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ceecCCCCCCeeeee-----------------------EEEEecC---------
Confidence 58999999999999999999999 778888888876532 1111111
Q ss_pred cCCccccccceeecCCCCCc----hhhhhhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLS----GEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~ls----Ge~qrv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~ 352 (394)
..+.++|+||++| .+..+ +++.++ .++|++++++|+++ .++.+.++.++.+.+.|
T Consensus 47 -------~~~~lvDlPG~ysl~~~s~ee~---------v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e~g~P 107 (156)
T PF02421_consen 47 -------QQVELVDLPGIYSLSSKSEEER---------VARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLELGIP 107 (156)
T ss_dssp -------EEEEEEE----SSSSSSSHHHH---------HHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHHTTSS
T ss_pred -------ceEEEEECCCcccCCCCCcHHH---------HHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHHcCCC
Confidence 2788999999988 23334 444444 68999999999987 66667888999999999
Q ss_pred EEEEEecCCccC
Q 016165 353 IRVVLNKADQVD 364 (394)
Q Consensus 353 viiv~nK~Dl~~ 364 (394)
+++++||+|...
T Consensus 108 ~vvvlN~~D~a~ 119 (156)
T PF02421_consen 108 VVVVLNKMDEAE 119 (156)
T ss_dssp EEEEEETHHHHH
T ss_pred EEEEEeCHHHHH
Confidence 999999999743
No 330
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.68 E-value=3.9e-17 Score=183.99 Aligned_cols=202 Identities=16% Similarity=0.261 Sum_probs=137.2
Q ss_pred cCCceeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCC--CC----------cCC-------
Q 016165 172 LKPLEVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPG--AH----------IGP------- 229 (394)
Q Consensus 172 ~~~l~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~--~~----------vs~------- 229 (394)
++.-+++|.|.+. ...++++++|++++ ++||+|++|||||||+++|+|.+.|. .+ .++
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence 4555778889642 14699999999988 99999999999999999999998631 00 000
Q ss_pred ---------------------------CcccceeEEEEecCcccccC------CceeeeccCCCCCcccccccccchhh-
Q 016165 230 ---------------------------EPTTDRFVVVMSGVDDRSIP------GNTVAVQADMPFSGLTTFGTAFLSKF- 275 (394)
Q Consensus 230 ---------------------------~p~t~r~~i~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~- 275 (394)
.|..++ |.+++.+...+. ...++.|+.+.|.| +..+|+.+...
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~~ 1322 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGK--ILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKED 1322 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCe--EEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCCC
Confidence 012333 566666654443 46678888888866 45555532211
Q ss_pred hhhcCCccccccceee----------c-----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCC
Q 016165 276 ECSQMPHSLLEHITLV----------D-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLD 334 (394)
Q Consensus 276 ~~~~~~~~~l~~~~l~----------D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~ 334 (394)
...+.+.++++..++. | ....+| ||+||++ ||||++++|+++|| .+|...
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa-------IARALlr~p~ILLLDEaTSaLD~~s-- 1393 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA-------IARALLREPKILLLDEATSSLDSNS-- 1393 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH-------HHHHHhcCCCEEEEeCcccccCHHH--
Confidence 0001111111111111 2 233477 8999999 99999999999999 788876
Q ss_pred chHHHHHHHHHHh-cCCCeEEEEEecCCccCHHHHHHHHhHhhhcc----ceee-ecCcccee
Q 016165 335 ISDEFKRVITSLR-GHDDKIRVVLNKADQVDTQQLMRVYGALMWSL----GKVL-NTPEVVRV 391 (394)
Q Consensus 335 ~~~~~~~~l~~l~-~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~----G~i~-~~~~~~~v 391 (394)
...+.+.|..+. .++.++|+|. |....+..+|+++++++ |+++ +.|...++
T Consensus 1394 -E~~I~~~L~~~~~~~~~TvIiIa-----HRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265 1394 -EKLIEKTIVDIKDKADKTIITIA-----HRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred -HHHHHHHHHHHhccCCCEEEEEe-----chHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence 677778888775 3578899998 77777777899999999 8965 66665443
No 331
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=2.1e-16 Score=153.43 Aligned_cols=118 Identities=23% Similarity=0.361 Sum_probs=95.7
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.|||+|+||+|||||+|.|+|... ++|++.|++||+.+.. ...+.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~-----------------~~~~~~-------------- 50 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYG-----------------DAEWLG-------------- 50 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccc-----------------eeEEcC--------------
Confidence 5799999999999999999999998 9999999999987521 111222
Q ss_pred hcCCccccccceeecCCCCCc-h----hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCe
Q 016165 278 SQMPHSLLEHITLVDTPGVLS-G----EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK 352 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls-G----e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~ 352 (394)
..|.++||+|+.. . +++..+ -+...+.+||++||++|... ++...+..+.+.|++.++|
T Consensus 51 --------~~f~lIDTgGl~~~~~~~l~~~i~~-------Qa~~Ai~eADvilfvVD~~~-Git~~D~~ia~~Lr~~~kp 114 (444)
T COG1160 51 --------REFILIDTGGLDDGDEDELQELIRE-------QALIAIEEADVILFVVDGRE-GITPADEEIAKILRRSKKP 114 (444)
T ss_pred --------ceEEEEECCCCCcCCchHHHHHHHH-------HHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC
Confidence 2688999999986 2 222223 56778999999999999986 7788888888888877799
Q ss_pred EEEEEecCCccC
Q 016165 353 IRVVLNKADQVD 364 (394)
Q Consensus 353 viiv~nK~Dl~~ 364 (394)
+++|+||+|-..
T Consensus 115 viLvvNK~D~~~ 126 (444)
T COG1160 115 VILVVNKIDNLK 126 (444)
T ss_pred EEEEEEcccCch
Confidence 999999999653
No 332
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.68 E-value=6.6e-17 Score=166.72 Aligned_cols=177 Identities=22% Similarity=0.258 Sum_probs=118.8
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--+++++|++..+.+++++++++++ +++|+|++|||||||+|+|+|.. .|..++ +.+++.+...+
T Consensus 321 i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--------~~~~G~--I~~~g~~i~~~~ 390 (529)
T TIGR02857 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV--------DPTEGS--IAVNGVPLADAD 390 (529)
T ss_pred EEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcE--EEECCEehhhCC
Confidence 444566788875334699999999988 99999999999999999999999 444554 44455543332
Q ss_pred -----CCceeeeccCCCCCcccccccccchhh-hhhcCCccccccceee----------c-----CCCCCc-hhhhhhhc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHITLV----------D-----TPGVLS-GEKQRTQR 306 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~l~----------D-----t~g~ls-Ge~qrv~~ 306 (394)
....++.|+.+.|.+ +..+|..+... ...+...+.++..++. | ....+| ||+||++
T Consensus 391 ~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~- 468 (529)
T TIGR02857 391 ADSWRDQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA- 468 (529)
T ss_pred HHHHHhheEEEcCCCcccCc-CHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH-
Confidence 245667777777765 45555432111 0111112222222221 2 234467 8999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHh
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGAL 375 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~ 375 (394)
+||+++++|+++|+ .+|+.. .+.+.+.+..+. .++++|+|+ |+.+.+..+|+++
T Consensus 469 ------laRal~~~~~ililDE~ts~lD~~~---~~~i~~~l~~~~-~~~t~i~it-----H~~~~~~~~d~i~ 527 (529)
T TIGR02857 469 ------LARAFLRDAPLLLLDEPTAHLDAET---EALVTEALRALA-QGRTVLLVT-----HRLALAERADRIV 527 (529)
T ss_pred ------HHHHHhcCCCEEEEeCcccccCHHH---HHHHHHHHHHhc-CCCEEEEEe-----cCHHHHHhCCEEE
Confidence 99999999999999 788776 677777777764 467888888 6666655446544
No 333
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.68 E-value=8.8e-17 Score=166.43 Aligned_cols=179 Identities=15% Similarity=0.094 Sum_probs=116.9
Q ss_pred ceeeeeec-CCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCc
Q 016165 175 LEVTYRFN-DFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGN 251 (394)
Q Consensus 175 l~~~~~~~-~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~ 251 (394)
-++++.|+ + +.++++++|++.. +++|+|+||||||||+++|+|...| ..|...+ .+. ...
T Consensus 8 ~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--------~~G~i~~--~~~-----~~i 70 (552)
T TIGR03719 8 NRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--------FNGEARP--APG-----IKV 70 (552)
T ss_pred eeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--------CCceEEe--cCC-----CEE
Confidence 35566786 4 5699999999887 9999999999999999999999842 2222111 000 012
Q ss_pred eeeeccCCCCCcccccccccch--h-------------------h----------------------hhhcCCccccccc
Q 016165 252 TVAVQADMPFSGLTTFGTAFLS--K-------------------F----------------------ECSQMPHSLLEHI 288 (394)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~--~-------------------~----------------------~~~~~~~~~l~~~ 288 (394)
.++.+....+...+...+..+. . . .....+.++++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 2223332222222222222100 0 0 0011233445555
Q ss_pred eee--c-CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEec
Q 016165 289 TLV--D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (394)
Q Consensus 289 ~l~--D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK 359 (394)
++. | .++.+| ||+||+. +|++++.+|+++|+ .+|+.. ...+.++|+.+ +.++|+++
T Consensus 151 ~l~~~~~~~~~LSgGqkqrv~-------la~al~~~p~lLLLDEPt~~LD~~~---~~~l~~~L~~~---~~tvIiis-- 215 (552)
T TIGR03719 151 RCPPWDADVTKLSGGERRRVA-------LCRLLLSKPDMLLLDEPTNHLDAES---VAWLEQHLQEY---PGTVVAVT-- 215 (552)
T ss_pred CCCcccCchhhcCHHHHHHHH-------HHHHHhcCCCEEEEcCCCCCCChHH---HHHHHHHHHhC---CCeEEEEe--
Confidence 552 3 678889 9999999 99999999999999 888876 66666776654 34677777
Q ss_pred CCccCHHHHHHH-HhHhhhccceee-ecCcc
Q 016165 360 ADQVDTQQLMRV-YGALMWSLGKVL-NTPEV 388 (394)
Q Consensus 360 ~Dl~~~~~~~~~-~~~~~~~~G~i~-~~~~~ 388 (394)
|+.+.+..+ ++++.+++|+++ ..|+.
T Consensus 216 ---Hd~~~~~~~~d~v~~l~~g~i~~~~g~~ 243 (552)
T TIGR03719 216 ---HDRYFLDNVAGWILELDRGRGIPWEGNY 243 (552)
T ss_pred ---CCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence 888888887 899999999975 44543
No 334
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=5.4e-17 Score=147.18 Aligned_cols=179 Identities=16% Similarity=0.199 Sum_probs=114.8
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----cCCceeee----
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-----IPGNTVAV---- 255 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-----~~~~~~~~---- 255 (394)
.+++|+||++++ +++++|+|||||||++++|+|... |..+...+ .|..+-. ...++++.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--------p~~G~v~V--~G~~Pf~~~~~~~~~~~~v~gqk~ 107 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--------PTSGKVRV--NGKDPFRRREEYLRSIGLVMGQKL 107 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--------cCCCeEEe--cCcCcchhHHHHHHHHHHHhhhhh
Confidence 488999999998 999999999999999999999994 43443222 1211100 00000000
Q ss_pred ccCCCCC---cccccccc-cchhhhhhcCCccccccceee----cCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 256 QADMPFS---GLTTFGTA-FLSKFECSQMPHSLLEHITLV----DTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 256 ~~~~~~~---g~~~~~~~-~~~~~~~~~~~~~~l~~~~l~----Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
+.-..++ .+.....+ .++..+-.++...+-+.+++. +..-.+| ||+.|++ +|.+++++|+++++
T Consensus 108 ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmrae-------LaaaLLh~p~VLfL 180 (325)
T COG4586 108 QLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAE-------LAAALLHPPKVLFL 180 (325)
T ss_pred eeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHH-------HHHHhcCCCcEEEe
Confidence 0000000 00000000 011112223333333333333 3556678 9999999 99999999999999
Q ss_pred -----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 327 -----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 327 -----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
++|... +..+.+++++..+. +.+|++.+ |+...+... +++++++.|+++++|+..+
T Consensus 181 DEpTvgLDV~a---q~~ir~Flke~n~~~~aTVllTT-----H~~~di~~lc~rv~~I~~Gqlv~dg~l~~ 243 (325)
T COG4586 181 DEPTVGLDVNA---QANIREFLKEYNEERQATVLLTT-----HIFDDIATLCDRVLLIDQGQLVFDGTLAQ 243 (325)
T ss_pred cCCccCcchhH---HHHHHHHHHHHHHhhCceEEEEe-----cchhhHHHhhhheEEeeCCcEeecccHHH
Confidence 888877 88999999998765 55555555 777777776 8999999999999876654
No 335
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.68 E-value=5.2e-17 Score=169.96 Aligned_cols=184 Identities=21% Similarity=0.237 Sum_probs=134.1
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc---ccCCceeeeccCCC
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---SIPGNTVAVQADMP 260 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---~~~~~~~~~~~~~~ 260 (394)
+.+++++++.+++ .++|+||||||||||+|+|+|...++. ..++ .+.+++.+.. ......++.|.+..
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~-----~~~G--~i~~~g~~~~~~~~~~~i~yv~Q~~~~ 110 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV-----KGSG--SVLLNGMPIDAKEMRAISAYVQQDDLF 110 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC-----ccee--EEEECCEECCHHHHhhhceeecccccc
Confidence 5699999999888 999999999999999999999873210 0122 2444444321 11234566777776
Q ss_pred CCcccccccccch----------hhhhhcCCccccccceeec----CCC------CCc-hhhhhhhcccChHHHHHHHhh
Q 016165 261 FSGLTTFGTAFLS----------KFECSQMPHSLLEHITLVD----TPG------VLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 261 ~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~D----t~g------~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
+..++..++..+. ..+..+.+.++++.+++.+ .+| .+| ||+||+. +|++++.
T Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvs-------ia~aL~~ 183 (617)
T TIGR00955 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLA-------FASELLT 183 (617)
T ss_pred CccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHH-------HHHHHHc
Confidence 7666766655211 1233445677888887754 344 367 9999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH-HHHH-HHhHhhhccceeeecCcccee
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ-QLMR-VYGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~-~~~~-~~~~~~~~~G~i~~~~~~~~v 391 (394)
+|+++++ ++|+.. ...+.+.++++.+++.++|+++ |.+. ++.+ +|+++++.+|+++..|+..++
T Consensus 184 ~p~vlllDEPtsgLD~~~---~~~l~~~L~~l~~~g~tvi~~~-----hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 184 DPPLLFCDEPTSGLDSFM---AYSVVQVLKGLAQKGKTIICTI-----HQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred CCCEEEeeCCCcchhHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 9999999 888876 7888999999887788888888 6553 4444 499999999999998876654
No 336
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.67 E-value=7.2e-17 Score=166.98 Aligned_cols=184 Identities=21% Similarity=0.253 Sum_probs=120.9
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--++++.|++. ..+++++++++++ +++|+|+||||||||+++|+|.. .|..|. +.+++.+....
T Consensus 323 i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~--------~~~~G~--i~~~g~~~~~~~ 391 (547)
T PRK10522 323 LELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY--------QPQSGE--ILLDGKPVTAEQ 391 (547)
T ss_pred EEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCeE--EEECCEECCCCC
Confidence 3344667788642 3589999999988 99999999999999999999998 344444 33344433221
Q ss_pred -----CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeec---C------CCCCc-hhhhhhhcccChHHH
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD---T------PGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~D---t------~g~ls-Ge~qrv~~~~~~~~i 313 (394)
....++.|+...|.+... .+. .....+...+.++.+++.+ . ...+| ||+||++ +
T Consensus 392 ~~~~~~~i~~v~q~~~lf~~ti~-~n~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~-------l 460 (547)
T PRK10522 392 PEDYRKLFSAVFTDFHLFDQLLG-PEG---KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLA-------L 460 (547)
T ss_pred HHHHhhheEEEecChhHHHHhhc-ccc---CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHH-------H
Confidence 234556666655554321 110 0001111222333333322 1 23577 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHH-hcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeec
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSL-RGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNT 385 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l-~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~ 385 (394)
||+++++|+++|+ .+|... ...+.+.+... +..+.++|+|+ |+.+.+..+|+++.+++|++++.
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~---~~~i~~~l~~~~~~~~~tvi~it-----H~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHF---RREFYQVLLPLLQEMGKTIFAIS-----HDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHHhCCCEEEEEE-----echHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999 677754 55555555443 33478888888 55666666699999999999864
No 337
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=7.7e-17 Score=144.69 Aligned_cols=161 Identities=14% Similarity=0.186 Sum_probs=102.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc--CCc
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI--PGN 251 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~--~~~ 251 (394)
+++++|++ +.+++ ++|++.+ +++|+|+||||||||+++|+|... |..+. +.+.+.+.... ...
T Consensus 6 ~l~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------~~~G~--i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 6 QLQFNIEQ--KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--------PSSGN--IYYKNCNINNIAKPYC 72 (195)
T ss_pred EeeEEECC--cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--------CCCcE--EEECCcccChhhhhhE
Confidence 44567765 44554 8988877 999999999999999999999983 33333 33333322111 112
Q ss_pred eeeeccCCCCCcccccccccchh-h-hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEE
Q 016165 252 TVAVQADMPFSGLTTFGTAFLSK-F-ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (394)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dll 324 (394)
.+..+....+...+...+..+.. . ...+...++++.+++.+ .++.+| ||+||+. +|++++.+|+++
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~-------la~al~~~p~~l 145 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVA-------IARLIACQSDLW 145 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHH-------HHHHHhcCCCEE
Confidence 22222222222233333331111 0 11223344555656543 567788 9999999 999999999999
Q ss_pred EE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEec
Q 016165 325 LL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (394)
Q Consensus 325 Ll-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK 359 (394)
|+ .+|+.. ...+.++++...+.+.++++++|.
T Consensus 146 llDEP~~~LD~~~---~~~l~~~l~~~~~~~~tiii~sh~ 182 (195)
T PRK13541 146 LLDEVETNLSKEN---RDLLNNLIVMKANSGGIVLLSSHL 182 (195)
T ss_pred EEeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEeCC
Confidence 99 788766 777788887666667888888844
No 338
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.67 E-value=5.4e-17 Score=147.69 Aligned_cols=171 Identities=16% Similarity=0.185 Sum_probs=105.6
Q ss_pred ccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCccc
Q 016165 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLT 265 (394)
Q Consensus 188 ~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 265 (394)
++++++|+++. +++|+|+||||||||+++|+|... |..+... .+.+.... . + .....+.+++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--------~~sG~i~-~~~~~~~~-~-~-----~~~~l~~~lt 65 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--------PDEGDFI-GLRGDALP-L-G-----ANSFILPGLT 65 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--------CCCCCEE-EecCceec-c-c-----cccccCCcCc
Confidence 67888988887 999999999999999999999983 3333311 11111100 0 0 1112233334
Q ss_pred ccccccc-hh---hhhhcCCccccccceee----cCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCC
Q 016165 266 TFGTAFL-SK---FECSQMPHSLLEHITLV----DTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPH 331 (394)
Q Consensus 266 ~~~~~~~-~~---~~~~~~~~~~l~~~~l~----Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~ 331 (394)
...+..+ .. ....+....+.+.+++. ..++.+| ||+||+. +|++++.+|+++|+ .+|..
T Consensus 66 v~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~-------la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 66 GEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLA-------FAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHH-------HHHHHhcCCCEEEECCCCccCCHH
Confidence 3343311 10 00000011111222332 2678889 9999999 99999999999998 45554
Q ss_pred CCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccce
Q 016165 332 KLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 332 ~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~ 390 (394)
. ...+.+++....+ +.++++++ |+...+..+ ++++++++|+++..+++.+
T Consensus 139 ~---~~~~~~~l~~~~~-~~~ii~vs-----H~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 189 (213)
T PRK15177 139 T---QLRMQAALACQLQ-QKGLIVLT-----HNPRLIKEHCHAFGVLLHGKITMCEDLAQ 189 (213)
T ss_pred H---HHHHHHHHHHHhh-CCcEEEEE-----CCHHHHHHhcCeeEEEECCeEEEeCCHHH
Confidence 3 4555555533222 34567666 888888776 9999999999998776644
No 339
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.8e-16 Score=134.74 Aligned_cols=191 Identities=18% Similarity=0.262 Sum_probs=127.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI----- 248 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~----- 248 (394)
++++.|+. ....++++|...| +.+|+|++|||||||+++|++...| ..+.....+...+...+
T Consensus 11 ~lsk~Yg~--~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p--------~~G~v~Y~~r~~~~~dl~~msE 80 (258)
T COG4107 11 GLSKLYGP--GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--------DAGTVTYRMRDGQPRDLYTMSE 80 (258)
T ss_pred hhhhhhCC--CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC--------CCCeEEEEcCCCCchhHhhhch
Confidence 44557777 5589999999988 9999999999999999999999843 22221111111111100
Q ss_pred ------CCceeeeccCCCCCccc----ccccc---cc--h-h-h-hhhcCCcccccccee-----ecCCCCCc-hhhhhh
Q 016165 249 ------PGNTVAVQADMPFSGLT----TFGTA---FL--S-K-F-ECSQMPHSLLEHITL-----VDTPGVLS-GEKQRT 304 (394)
Q Consensus 249 ------~~~~~~~~~~~~~~g~~----~~~~~---~~--~-~-~-~~~~~~~~~l~~~~l-----~Dt~g~ls-Ge~qrv 304 (394)
..+.--+....+..|+. .-+|+ .+ . + + .....+.++|+.+.| .|.|-..| |++||+
T Consensus 81 aeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRL 160 (258)
T COG4107 81 AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRL 160 (258)
T ss_pred HHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHH
Confidence 00000011111112221 01111 00 0 0 0 234445666666654 46888899 899999
Q ss_pred hcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhh
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMW 377 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~ 377 (394)
. |||.++..|.++++ ++|.+- +....++++.+..+ +..++||+ |+...+.-. ++..+|
T Consensus 161 Q-------iARnLVt~PrLvfMDEPTGGLDVSV---QARLLDllrgLv~~l~la~viVT-----HDl~VarLla~rlmvm 225 (258)
T COG4107 161 Q-------IARNLVTRPRLVFMDEPTGGLDVSV---QARLLDLLRGLVRELGLAVVIVT-----HDLAVARLLADRLMVM 225 (258)
T ss_pred H-------HHHHhccCCceEEecCCCCCcchhh---HHHHHHHHHHHHHhcCceEEEEe-----chhHHHHHhhhcceee
Confidence 9 99999999999999 888876 88899999888654 77888888 777666555 899999
Q ss_pred ccceeeecCcccee
Q 016165 378 SLGKVLNTPEVVRV 391 (394)
Q Consensus 378 ~~G~i~~~~~~~~v 391 (394)
+.|++++.|-...|
T Consensus 226 k~g~vve~GLTDrv 239 (258)
T COG4107 226 KQGQVVESGLTDRV 239 (258)
T ss_pred cCCCEecccccccc
Confidence 99999988766655
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=6.3e-17 Score=169.72 Aligned_cols=179 Identities=20% Similarity=0.215 Sum_probs=119.3
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCccc-ceeEEEEecCcccccCCce
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT-DRFVVVMSGVDDRSIPGNT 252 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t-~r~~i~~~~~~~~~~~~~~ 252 (394)
++++.|++ +.++++++|++.+ +++|+||||||||||+++|+|...| .++.... ....+.+..+....
T Consensus 317 ~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p---~~G~i~~~~~~~igy~~Q~~~~----- 386 (638)
T PRK10636 317 KVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP---VSGEIGLAKGIKLGYFAQHQLE----- 386 (638)
T ss_pred eeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEEECCCEEEEEecCcchh-----
Confidence 45567765 5699999999887 9999999999999999999999842 1111100 01122333222100
Q ss_pred eeeccCCCCCccccccccc-chhhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEE
Q 016165 253 VAVQADMPFSGLTTFGTAF-LSKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllL 325 (394)
......+...... .........+.+++..+++. + .++.+| ||+||+. +|++++.+|+++|
T Consensus 387 ------~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~-------La~~l~~~p~lLl 453 (638)
T PRK10636 387 ------FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLV-------LALIVWQRPNLLL 453 (638)
T ss_pred ------hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 0000111111110 01111223455677777774 2 688999 9999999 9999999999999
Q ss_pred E-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee-ecCcc
Q 016165 326 L-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL-NTPEV 388 (394)
Q Consensus 326 l-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~-~~~~~ 388 (394)
+ .+|+.. ...+.++|..+ +.+||+|+ |+...+..+ ++++++++|+++ ..|..
T Consensus 454 LDEPt~~LD~~~---~~~l~~~L~~~---~gtvi~vS-----Hd~~~~~~~~d~i~~l~~G~i~~~~g~~ 512 (638)
T PRK10636 454 LDEPTNHLDLDM---RQALTEALIDF---EGALVVVS-----HDRHLLRSTTDDLYLVHDGKVEPFDGDL 512 (638)
T ss_pred EcCCCCCCCHHH---HHHHHHHHHHc---CCeEEEEe-----CCHHHHHHhCCEEEEEECCEEEEcCCCH
Confidence 9 888876 77777777776 34777777 888888887 999999999986 45544
No 341
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.66 E-value=6.4e-17 Score=153.10 Aligned_cols=172 Identities=18% Similarity=0.222 Sum_probs=106.1
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSG 263 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g 263 (394)
+.++++++|++.+ +++|+|+||||||||+++|+|... |..+...+ .+ ...+..+....+.+
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--------p~~G~I~i--~g-------~i~yv~q~~~l~~~ 112 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--------PSEGKIKH--SG-------RISFSSQFSWIMPG 112 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCcEEEE--CC-------EEEEEeCccccccc
Confidence 4589999999887 999999999999999999999983 33333211 11 01122222222211
Q ss_pred ccccccccch----h---hh--hhcCCccccccc------eeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-
Q 016165 264 LTTFGTAFLS----K---FE--CSQMPHSLLEHI------TLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (394)
Q Consensus 264 ~~~~~~~~~~----~---~~--~~~~~~~~l~~~------~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl- 326 (394)
+...+.... . .. ......+.+..+ .+...+..+| ||+||+. +|++++.+|+++|+
T Consensus 113 -tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~-------lAraL~~~p~iLiLD 184 (282)
T cd03291 113 -TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS-------LARAVYKDADLYLLD 184 (282)
T ss_pred -CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHH-------HHHHHhcCCCEEEEE
Confidence 222221100 0 00 000011111111 1112356788 9999999 99999999999999
Q ss_pred ----EeCCCCCCchHHHHHH-HHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCcccee
Q 016165 327 ----LFDPHKLDISDEFKRV-ITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 327 ----~lD~~~~~~~~~~~~~-l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~v 391 (394)
.+|+.. ...+.+. ++.+. .+.++++++ |+.+.+..+++++++++|+++..+.+.++
T Consensus 185 EPt~gLD~~~---~~~l~~~ll~~~~-~~~tIiiis-----H~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 245 (282)
T cd03291 185 SPFGYLDVFT---EKEIFESCVCKLM-ANKTRILVT-----SKMEHLKKADKILILHEGSSYFYGTFSEL 245 (282)
T ss_pred CCCccCCHHH---HHHHHHHHHHHhh-CCCEEEEEe-----CChHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 788764 5556553 44554 367777777 66666654599999999999877665543
No 342
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=2.2e-16 Score=153.39 Aligned_cols=124 Identities=22% Similarity=0.348 Sum_probs=102.0
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.++||+|.||+|||||+|+|+|.++ .++++.|+|||+.|.. .+.+++
T Consensus 179 ikiaiiGrPNvGKSsLiN~ilgeeR--~Iv~~~aGTTRD~I~~-----------------~~e~~~-------------- 225 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAILGEER--VIVSDIAGTTRDSIDI-----------------EFERDG-------------- 225 (444)
T ss_pred eEEEEEeCCCCCchHHHHHhccCce--EEecCCCCccccceee-----------------eEEECC--------------
Confidence 4899999999999999999999999 9999999999988731 122223
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHH--hhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWF--AAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral--~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vii 355 (394)
..+.++||+|.+. +.++..+.++.+.+|++ +..++++++++|++. +..+++..+.....+.|.++++
T Consensus 226 --------~~~~liDTAGiRr--k~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~g~~~vI 294 (444)
T COG1160 226 --------RKYVLIDTAGIRR--KGKITESVEKYSVARTLKAIERADVVLLVIDATE-GISEQDLRIAGLIEEAGRGIVI 294 (444)
T ss_pred --------eEEEEEECCCCCc--ccccccceEEEeehhhHhHHhhcCEEEEEEECCC-CchHHHHHHHHHHHHcCCCeEE
Confidence 2778999999986 33444444455566654 789999999999987 7788899999998899999999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
++||+|+++.
T Consensus 295 vvNKWDl~~~ 304 (444)
T COG1160 295 VVNKWDLVEE 304 (444)
T ss_pred EEEccccCCc
Confidence 9999999875
No 343
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.66 E-value=1.1e-16 Score=152.01 Aligned_cols=179 Identities=21% Similarity=0.232 Sum_probs=132.7
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---------CCceeee
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---------PGNTVAV 255 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---------~~~~~~~ 255 (394)
.++++++++... .++|||++|||||||-.+|+++..+ .+ + +.+.|++.... ...-+++
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G------~--I~F~G~~i~~~~~~~mrplR~~mQvVF 369 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QG------E--IRFDGQDIDGLSRKEMRPLRRRMQVVF 369 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---Cc------e--EEECCccccccChhhhhhhhhhceEEE
Confidence 477888888776 9999999999999999999998842 12 2 33333332211 1233345
Q ss_pred ccCCCCCccccc--------ccc-----cchhhhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 256 QADMPFSGLTTF--------GTA-----FLSKFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 256 ~~~~~~~g~~~~--------~~~-----~~~~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
|+++. .+... +.. ..+..+..+++.+.|+.+++.. .|...| |++||++ |||+
T Consensus 370 QDPyg--SLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIA-------IARA 440 (534)
T COG4172 370 QDPYG--SLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIA-------IARA 440 (534)
T ss_pred eCCCC--CCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHH-------HHHH
Confidence 54432 11111 011 1233456677788888888853 788899 8999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|.++++ .+|.+- +.++.++++.|.+ ++...++|. ||...+.-+ +++++|++|+|++.|++.
T Consensus 441 liLkP~~i~LDEPTSALD~SV---QaQvv~LLr~LQ~k~~LsYLFIS-----HDL~VvrAl~~~viVm~~GkiVE~G~~~ 512 (534)
T COG4172 441 LILKPELILLDEPTSALDRSV---QAQVLDLLRDLQQKHGLSYLFIS-----HDLAVVRALCHRVIVMRDGKIVEQGPTE 512 (534)
T ss_pred HhcCCcEEEecCCchHhhHHH---HHHHHHHHHHHHHHhCCeEEEEe-----ccHHHHHHhhceEEEEeCCEEeeeCCHH
Confidence 9999999999 677664 8899999999975 478889998 888888776 899999999999999998
Q ss_pred eeec
Q 016165 390 RVYI 393 (394)
Q Consensus 390 ~v~~ 393 (394)
++|.
T Consensus 513 ~if~ 516 (534)
T COG4172 513 AVFA 516 (534)
T ss_pred HHhc
Confidence 8874
No 344
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=1.7e-16 Score=134.16 Aligned_cols=176 Identities=19% Similarity=0.260 Sum_probs=124.4
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC------Cceeeecc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP------GNTVAVQA 257 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~------~~~~~~~~ 257 (394)
..+++++||.+.+ +++|.||+|||||||+++++.+.. |..+. +.+.|++..... .++|..|.
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--------p~~G~--l~f~Ge~vs~~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--------PTSGT--LLFEGEDVSTLKPEAYRQQVSYCAQT 85 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--------CCCce--EEEcCccccccChHHHHHHHHHHHcC
Confidence 5689999998887 999999999999999999999983 32222 334444433322 23333344
Q ss_pred CCCCCcccccccccch-----hhhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 258 DMPFSGLTTFGTAFLS-----KFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 258 ~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
.-.|++ +.+.|..++ +..+...+.+++..+.+.+ .+..+| ||+||++ ++|.+..-|+++|+
T Consensus 86 paLfg~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriA-------liR~Lq~~P~ILLL 157 (223)
T COG4619 86 PALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIA-------LIRNLQFMPKILLL 157 (223)
T ss_pred cccccc-chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHH-------HHHHhhcCCceEEe
Confidence 443433 445554222 2234555667777777765 466678 8999999 99999999999999
Q ss_pred -----EeCCCCCCchHHHHHHHHHHh-cCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 327 -----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 327 -----~lD~~~~~~~~~~~~~l~~l~-~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
.+|..+ .+.+.+++..+. ++...++.|+ |+.++..+. ++++-+..|++-...+
T Consensus 158 DE~TsALD~~n---kr~ie~mi~~~v~~q~vAv~WiT-----Hd~dqa~rha~k~itl~~G~~~~~~e 217 (223)
T COG4619 158 DEITSALDESN---KRNIEEMIHRYVREQNVAVLWIT-----HDKDQAIRHADKVITLQPGHAGEMQE 217 (223)
T ss_pred cCchhhcChhh---HHHHHHHHHHHhhhhceEEEEEe-----cChHHHhhhhheEEEeccCccccccc
Confidence 888887 778888887776 5677888888 888885554 8888888888754333
No 345
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=9.5e-17 Score=171.59 Aligned_cols=197 Identities=19% Similarity=0.239 Sum_probs=140.3
Q ss_pred HHHhcCCceeeeeecCCc-CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCc
Q 016165 168 YIQKLKPLEVTYRFNDFV-SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVD 244 (394)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~ 244 (394)
++.+++..+++|.|+... ..+++|+++++.. .+|||||+||||||.+-+|-+.+ +|..+. +.+++.+
T Consensus 984 ~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY--------dp~~G~--V~IDg~d 1053 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY--------DPDAGK--VKIDGVD 1053 (1228)
T ss_pred ceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc--------CCCCCe--EEECCcc
Confidence 344567778888997532 3599999999887 99999999999999999999999 566666 4456766
Q ss_pred ccccC------CceeeeccCCCCCcccccccccch-----hhhhhcCCccc-cccc--eee---c-----CCCCCc-hhh
Q 016165 245 DRSIP------GNTVAVQADMPFSGLTTFGTAFLS-----KFECSQMPHSL-LEHI--TLV---D-----TPGVLS-GEK 301 (394)
Q Consensus 245 ~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~-l~~~--~l~---D-----t~g~ls-Ge~ 301 (394)
...+. ....+-|++..|.+ +..+|+.+. ..+..+.+... ...| .+. | .-.++| ||+
T Consensus 1054 ik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1054 IKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred cccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence 65543 45567788887765 344444222 11111111000 0011 121 2 345678 899
Q ss_pred hhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhh
Q 016165 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALM 376 (394)
Q Consensus 302 qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~ 376 (394)
||++ ||||++++|+++|| .||..+ .+-+.+.|+.... |.++|+|. |...-+...|.+.+
T Consensus 1133 QRIA-------IARAilRnPkILLLDEATSALDseS---ErvVQeALd~a~~-gRT~IvIA-----HRLSTIqnaD~I~V 1196 (1228)
T KOG0055|consen 1133 QRIA-------IARAILRNPKILLLDEATSALDSES---ERVVQEALDRAME-GRTTIVIA-----HRLSTIQNADVIAV 1196 (1228)
T ss_pred HHHH-------HHHHHHcCCCeeeeeccchhhhhhh---HHHHHHHHHHhhc-CCcEEEEe-----cchhhhhcCCEEEE
Confidence 9999 99999999999999 788765 5556677777654 67888888 77888888899999
Q ss_pred hccceeeecCcccee
Q 016165 377 WSLGKVLNTPEVVRV 391 (394)
Q Consensus 377 ~~~G~i~~~~~~~~v 391 (394)
+++|++++.|.-.++
T Consensus 1197 i~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1197 LKNGKVVEQGTHDEL 1211 (1228)
T ss_pred EECCEEEecccHHHH
Confidence 999999998876554
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.65 E-value=2e-16 Score=163.94 Aligned_cols=175 Identities=19% Similarity=0.147 Sum_probs=118.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++. .++++++++.. +++|+|+||||||||+++|+|... |..+...+. ....+
T Consensus 345 ~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--------p~~G~I~~~---------~~i~y 404 (590)
T PRK13409 345 DLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--------PDEGEVDPE---------LKISY 404 (590)
T ss_pred ceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceEEEEe---------eeEEE
Confidence 445566552 37888887766 999999999999999999999983 333332210 01222
Q ss_pred eeccCCCCCcccccccccchh--hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 254 AVQADMPFSGLTTFGTAFLSK--FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
..+........+...+..... ........++++.+++.+ .++.+| ||+||+. +|++++.+|+++|+
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRva-------iAraL~~~p~llLL 477 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVA-------IAACLSRDADLYLL 477 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 223222222223333221110 001112356677777654 788999 9999999 99999999999999
Q ss_pred -----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 327 -----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 327 -----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
.+|+.. ...+.++|+++.++ +.++++|+ |+.+.+..+ |++++++. ++...+
T Consensus 478 DEPt~~LD~~~---~~~l~~~l~~l~~~~g~tviivs-----HD~~~~~~~aDrvivl~~-~~~~~g 535 (590)
T PRK13409 478 DEPSAHLDVEQ---RLAVAKAIRRIAEEREATALVVD-----HDIYMIDYISDRLMVFEG-EPGKHG 535 (590)
T ss_pred eCCccCCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEcC-cceeee
Confidence 788876 88889999998664 77888888 888888877 88888864 665433
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.65 E-value=1.4e-16 Score=179.15 Aligned_cols=181 Identities=19% Similarity=0.214 Sum_probs=129.9
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--ccCCceeeeccCCCC
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--SIPGNTVAVQADMPF 261 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--~~~~~~~~~~~~~~~ 261 (394)
+.+|+++++.+++ +++|+||||||||||+|+|+|...++ .|..+. +.+++.+.. ......++.|.+..+
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g-----~~~~G~--I~i~G~~~~~~~~~~i~yv~Q~~~~~ 848 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTG-----VITGGD--RLVNGRPLDSSFQRSIGYVQQQDLHL 848 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-----CcceeE--EEECCEECChhhhcceeeecccccCC
Confidence 5699999999888 99999999999999999999987311 233333 334443321 112345566666656
Q ss_pred Ccccccccccch----------hhhhhcCCccccccceeec----CCC----CCc-hhhhhhhcccChHHHHHHHhhcCC
Q 016165 262 SGLTTFGTAFLS----------KFECSQMPHSLLEHITLVD----TPG----VLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (394)
Q Consensus 262 ~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~D----t~g----~ls-Ge~qrv~~~~~~~~iaral~~~~d 322 (394)
...+..++..+. ..+..+.++++++.+++.+ .+| .+| ||+||+. ||++++.+|+
T Consensus 849 ~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~-------Ia~aL~~~P~ 921 (1394)
T TIGR00956 849 PTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLT-------IGVELVAKPK 921 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHH-------HHHHHHcCCC
Confidence 666666655221 1123345667777777654 334 578 9999999 9999999998
Q ss_pred -EEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHH-H-HHHHhHhhhccc-eeeecCcc
Q 016165 323 -LILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQ-L-MRVYGALMWSLG-KVLNTPEV 388 (394)
Q Consensus 323 -llLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~-~-~~~~~~~~~~~G-~i~~~~~~ 388 (394)
++++ ++|... ...+.++|+++.++|.+||+++ |++.. + ..+|+++++++| +++..|++
T Consensus 922 ~iLlLDEPTsgLD~~~---~~~i~~~L~~la~~g~tvI~t~-----H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 922 LLLFLDEPTSGLDSQT---AWSICKLMRKLADHGQAILCTI-----HQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred eEEEEcCCCCCCCHHH---HHHHHHHHHHHHHcCCEEEEEe-----cCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 7888 888876 7888999999987788888888 55543 2 335999999987 99987765
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.1e-16 Score=167.87 Aligned_cols=181 Identities=16% Similarity=0.219 Sum_probs=115.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCccccee------EEEEecCccc
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRF------VVVMSGVDDR 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~------~i~~~~~~~~ 246 (394)
-++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..|.. .+.+..+...
T Consensus 5 ~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--------pd~G~I~~~~~~~i~~~~q~~~ 74 (638)
T PRK10636 5 SSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--------ADGGSYTFPGNWQLAWVNQETP 74 (638)
T ss_pred EEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCceEEecCCCEEEEEecCCC
Confidence 356778877 6799999999988 999999999999999999999874 222221 1222222111
Q ss_pred ccCCc--eeeeccCCCCCccccc-------cc-ccch----------hhhhhcCCccccccceee----c-CCCCCc-hh
Q 016165 247 SIPGN--TVAVQADMPFSGLTTF-------GT-AFLS----------KFECSQMPHSLLEHITLV----D-TPGVLS-GE 300 (394)
Q Consensus 247 ~~~~~--~~~~~~~~~~~g~~~~-------~~-~~~~----------~~~~~~~~~~~l~~~~l~----D-t~g~ls-Ge 300 (394)
..... .++.+....+..++.. .. ..+. .......+.++++.+++. | .++.+| ||
T Consensus 75 ~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGe 154 (638)
T PRK10636 75 ALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGW 154 (638)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHH
Confidence 11000 0011100000000000 00 0000 001223456678888874 2 678899 99
Q ss_pred hhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhH
Q 016165 301 KQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGA 374 (394)
Q Consensus 301 ~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~ 374 (394)
+||+. +|++++.+|+++|+ .+|+.. ...+.++|+.+ +.++|+|+ |+...+..+ +++
T Consensus 155 rqRv~-------LA~aL~~~P~lLLLDEPtn~LD~~~---~~~L~~~L~~~---~~tviivs-----Hd~~~l~~~~d~i 216 (638)
T PRK10636 155 RMRLN-------LAQALICRSDLLLLDEPTNHLDLDA---VIWLEKWLKSY---QGTLILIS-----HDRDFLDPIVDKI 216 (638)
T ss_pred HHHHH-------HHHHHccCCCEEEEcCCCCcCCHHH---HHHHHHHHHhC---CCeEEEEe-----CCHHHHHHhcCEE
Confidence 99999 99999999999999 788765 44455555443 45777777 888888877 899
Q ss_pred hhhccceee
Q 016165 375 LMWSLGKVL 383 (394)
Q Consensus 375 ~~~~~G~i~ 383 (394)
+.+++|++.
T Consensus 217 ~~L~~G~i~ 225 (638)
T PRK10636 217 IHIEQQSLF 225 (638)
T ss_pred EEEeCCEEE
Confidence 999999986
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.64 E-value=2.9e-16 Score=164.96 Aligned_cols=174 Identities=18% Similarity=0.219 Sum_probs=114.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..+... + +.+. ...+
T Consensus 324 ~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--------p~~G~i~--~-~~~~----~i~y 386 (635)
T PRK11147 324 NVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--------ADSGRIH--C-GTKL----EVAY 386 (635)
T ss_pred eeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--------CCCcEEE--E-CCCc----EEEE
Confidence 55667766 5699999999887 999999999999999999999984 2222211 1 1100 1122
Q ss_pred eeccC-CCCCcccccccccchh-----hhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHHhhcC
Q 016165 254 AVQAD-MPFSGLTTFGTAFLSK-----FECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (394)
Q Consensus 254 ~~~~~-~~~~g~~~~~~~~~~~-----~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~ 321 (394)
..+.. ..+...+...+..... ......+..++..+++. + .++.+| ||+||+. +|++++.+|
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~-------la~al~~~p 459 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLL-------LARLFLKPS 459 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHH-------HHHHHhcCC
Confidence 22221 1122222222221100 00112244566666663 2 678999 9999999 999999999
Q ss_pred CEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhc-cceeee
Q 016165 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWS-LGKVLN 384 (394)
Q Consensus 322 dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~-~G~i~~ 384 (394)
+++|+ .+|+.. ...+.++++.+ +.++|+|+ |+...+..+ +++++++ +|++..
T Consensus 460 ~lLlLDEPt~~LD~~~---~~~l~~~l~~~---~~tvi~vS-----Hd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 460 NLLILDEPTNDLDVET---LELLEELLDSY---QGTVLLVS-----HDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred CEEEEcCCCCCCCHHH---HHHHHHHHHhC---CCeEEEEE-----CCHHHHHHhcCEEEEEeCCCeEEE
Confidence 99999 788765 55566666554 44777777 888888776 8899997 798864
No 350
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.63 E-value=3.4e-16 Score=161.49 Aligned_cols=164 Identities=24% Similarity=0.335 Sum_probs=110.0
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--++++.|++. +.+++|+++++++ +++|+|++|||||||+|.|+|.. .|..|+ +.+++.+...+
T Consensus 335 I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--------~p~~G~--I~i~g~~i~~~~ 403 (529)
T TIGR02868 335 LELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL--------DPLQGE--VTLDGVSVSSLQ 403 (529)
T ss_pred EEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcE--EEECCEEhhhHH
Confidence 4455678888653 3599999999988 99999999999999999999999 455555 34444433222
Q ss_pred ----CCceeeeccCCCCCcccccccccchh-hhhhcCCccccccceee----------cC-----CCCCc-hhhhhhhcc
Q 016165 249 ----PGNTVAVQADMPFSGLTTFGTAFLSK-FECSQMPHSLLEHITLV----------DT-----PGVLS-GEKQRTQRA 307 (394)
Q Consensus 249 ----~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----------Dt-----~g~ls-Ge~qrv~~~ 307 (394)
....++.|+.+.|++ +..+|..+.. ....+...++++..++. || ...+| ||+||++
T Consensus 404 ~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia-- 480 (529)
T TIGR02868 404 DELRRRISVFAQDAHLFDT-TVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA-- 480 (529)
T ss_pred HHHHhheEEEccCcccccc-cHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH--
Confidence 245667788887776 4455543211 11111122222222221 23 23367 8999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
+||+++++|+++|+ .+|... ...+.+.+..+. +++++|+|+|
T Consensus 481 -----iARall~~~~iliLDE~TSaLD~~t---e~~I~~~l~~~~-~~~TvIiItH 527 (529)
T TIGR02868 481 -----LARALLADAPILLLDEPTEHLDAGT---ESELLEDLLAAL-SGKTVVVITH 527 (529)
T ss_pred -----HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHhc-CCCEEEEEec
Confidence 99999999999999 677765 566666666543 3678888885
No 351
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.63 E-value=4.8e-16 Score=161.05 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=116.6
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++ +.++++++|++.+ +++|+|+||||||||+++|+|... |..+... + +.. ....+
T Consensus 329 ~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--------p~~G~i~--~-~~~----~~i~~ 391 (556)
T PRK11819 329 NLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--------PDSGTIK--I-GET----VKLAY 391 (556)
T ss_pred eEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCeEEE--E-CCc----eEEEE
Confidence 44566765 5699999999887 999999999999999999999984 3333311 1 110 01223
Q ss_pred eeccC-CCCCcccccccccchh----h-hhhcCCccccccceee----c-CCCCCc-hhhhhhhcccChHHHHHHHhhcC
Q 016165 254 AVQAD-MPFSGLTTFGTAFLSK----F-ECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (394)
Q Consensus 254 ~~~~~-~~~~g~~~~~~~~~~~----~-~~~~~~~~~l~~~~l~----D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~ 321 (394)
+.+.. ..+...+...+..+.. . ........+++.+++. + .++.+| ||+||+. +|++++.+|
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~-------la~al~~~p 464 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLH-------LAKTLKQGG 464 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHH-------HHHHHhcCC
Confidence 33332 2222333333321100 0 0011123466777764 2 688999 9999999 999999999
Q ss_pred CEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc-ceee
Q 016165 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL-GKVL 383 (394)
Q Consensus 322 dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~-G~i~ 383 (394)
+++|+ .+|+.. ...+.++|..+. .++|+++ |+.+.+..+ ++++++++ |++.
T Consensus 465 ~lllLDEPt~~LD~~~---~~~l~~~l~~~~---~tvi~vt-----Hd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 465 NVLLLDEPTNDLDVET---LRALEEALLEFP---GCAVVIS-----HDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred CEEEEcCCCCCCCHHH---HHHHHHHHHhCC---CeEEEEE-----CCHHHHHHhCCEEEEEECCCeEE
Confidence 99999 888876 777778887763 3677776 888888887 89999985 7775
No 352
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.63 E-value=3e-15 Score=118.64 Aligned_cols=88 Identities=28% Similarity=0.395 Sum_probs=86.3
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCC
Q 016165 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGH 87 (394)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g~ 87 (394)
.|.+|++|...|.+.|..+|.+++|+|+.++...+|...|++.+.+.+||..+|.+++|.++++||+.+|++++.++.|.
T Consensus 1 ~~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~ 80 (96)
T smart00027 1 DWAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGY 80 (96)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCC
Q 016165 88 QVTHDLWN 95 (394)
Q Consensus 88 ~~~~~l~~ 95 (394)
++|.++|+
T Consensus 81 ~~~~~~~~ 88 (96)
T smart00027 81 PIPASLPP 88 (96)
T ss_pred CCCccCCH
Confidence 99999998
No 353
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.63 E-value=5.6e-16 Score=160.43 Aligned_cols=173 Identities=17% Similarity=0.222 Sum_probs=115.1
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++ ..++++++|++.. +++|+|+||||||||+++|+|... |..+... + +.+. ...+
T Consensus 327 ~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--------p~~G~i~--~-~~~~----~i~~ 389 (552)
T TIGR03719 327 NLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--------PDSGTIK--I-GETV----KLAY 389 (552)
T ss_pred eEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--------CCCeEEE--E-CCce----EEEE
Confidence 44556765 5699999999887 999999999999999999999984 2233211 1 1100 1223
Q ss_pred eeccC-CCCCcccccccccchh----h-hhhcCCccccccceee----c-CCCCCc-hhhhhhhcccChHHHHHHHhhcC
Q 016165 254 AVQAD-MPFSGLTTFGTAFLSK----F-ECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (394)
Q Consensus 254 ~~~~~-~~~~g~~~~~~~~~~~----~-~~~~~~~~~l~~~~l~----D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~ 321 (394)
..+.. ..+...+...+..+.. . .......++++.+++. + .++.+| ||+||+. +|++++.+|
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~-------la~al~~~p 462 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVH-------LAKTLKSGG 462 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHH-------HHHHHhhCC
Confidence 33322 1222233333221100 0 0011123566777763 2 578999 9999999 999999999
Q ss_pred CEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc-ceee
Q 016165 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL-GKVL 383 (394)
Q Consensus 322 dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~-G~i~ 383 (394)
+++|+ .+|+.. ...+.++|+.+. .++|+++ |+.+.+..+ ++++++++ |++.
T Consensus 463 ~lllLDEPt~~LD~~~---~~~l~~~l~~~~---~~viivs-----Hd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 463 NVLLLDEPTNDLDVET---LRALEEALLEFA---GCAVVIS-----HDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred CEEEEeCCCCCCCHHH---HHHHHHHHHHCC---CeEEEEe-----CCHHHHHHhCCEEEEEECCCeEE
Confidence 99999 788766 777778887763 3677777 888888877 89999986 5765
No 354
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=2e-15 Score=130.73 Aligned_cols=144 Identities=23% Similarity=0.385 Sum_probs=100.4
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceee
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVA 254 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~ 254 (394)
+++.|.+ ..+++++++++.+ +++|+|+||+|||||+++|+|... |..++ +.+.+.+....
T Consensus 5 ~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--------~~~G~--i~~~~~~~~~~------ 66 (157)
T cd00267 5 LSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--------PTSGE--ILIDGKDIAKL------ 66 (157)
T ss_pred EEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCccE--EEECCEEcccC------
Confidence 4556765 4689999998887 999999999999999999999883 33333 22221110000
Q ss_pred eccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----Ee
Q 016165 255 VQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LF 328 (394)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~l 328 (394)
.. .+....+.+... +| ||++|+. ++++++.+|+++++ .+
T Consensus 67 -------------~~------------~~~~~~i~~~~q---lS~G~~~r~~-------l~~~l~~~~~i~ilDEp~~~l 111 (157)
T cd00267 67 -------------PL------------EELRRRIGYVPQ---LSGGQRQRVA-------LARALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred -------------CH------------HHHHhceEEEee---CCHHHHHHHH-------HHHHHhcCCCEEEEeCCCcCC
Confidence 00 000011222111 88 9999999 99999999999999 78
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 329 DPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 329 D~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
|..+ ...+.+++..+...+.++++++ |+.+.+..+ ++++.+.+|+
T Consensus 112 D~~~---~~~l~~~l~~~~~~~~tii~~s-----h~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 112 DPAS---RERLLELLRELAEEGRTVIIVT-----HDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHhCCEEEEEeCcC
Confidence 8765 7778888888766566777777 888888876 8877777654
No 355
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.62 E-value=2.3e-16 Score=152.70 Aligned_cols=196 Identities=21% Similarity=0.319 Sum_probs=135.6
Q ss_pred HHhcCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc
Q 016165 169 IQKLKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR 246 (394)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~ 246 (394)
+.+++.-|+++.|... +.+++|+||.+++ .+|++||+|+||||+|+.|.+.. +..++. +.+++++..
T Consensus 535 ~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff--------dv~sGs--I~iDgqdIr 603 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF--------DVNSGS--ITIDGQDIR 603 (790)
T ss_pred CCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh--------hccCce--EEEcCchHH
Confidence 3445566888999764 6899999999998 99999999999999999999988 333343 556777654
Q ss_pred cc------CCceeeeccCCCCCcccccccccchh-----hhhhc--CCcccccc-ceeec----CCCC----Cc-hhhhh
Q 016165 247 SI------PGNTVAVQADMPFSGLTTFGTAFLSK-----FECSQ--MPHSLLEH-ITLVD----TPGV----LS-GEKQR 303 (394)
Q Consensus 247 ~~------~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~--~~~~~l~~-~~l~D----t~g~----ls-Ge~qr 303 (394)
.. ....+++|+...|+. +...|+.+.+ .+..+ ++.++-++ +++.| ..|. +| ||+||
T Consensus 604 nvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 604 NVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred HHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh
Confidence 32 345556676666654 2333332211 12221 12222222 23444 2333 35 89999
Q ss_pred hhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhc
Q 016165 304 TQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWS 378 (394)
Q Consensus 304 v~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~ 378 (394)
|+ +||++.+.|.++++ .+|..+ .+.+..-+.+++. +.+.|+|. |...-+-..|.+.+++
T Consensus 683 VA-------iARtiLK~P~iIlLDEATSALDT~t---ER~IQaaL~rlca-~RTtIVvA-----HRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 683 VA-------IARTILKAPSIILLDEATSALDTNT---ERAIQAALARLCA-NRTTIVVA-----HRLSTIVNADLILVIS 746 (790)
T ss_pred HH-------HHHHHhcCCcEEEEcchhhhcCCcc---HHHHHHHHHHHhc-CCceEEEe-----eeehheecccEEEEEe
Confidence 99 99999999999999 788776 6777777888776 45667777 5555666668899999
Q ss_pred cceeeecCccceee
Q 016165 379 LGKVLNTPEVVRVY 392 (394)
Q Consensus 379 ~G~i~~~~~~~~v~ 392 (394)
+|+|++.|.-+++.
T Consensus 747 ~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 747 NGRIVERGRHEELL 760 (790)
T ss_pred CCeEeecCcHHHHH
Confidence 99999988766543
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.62 E-value=5.1e-16 Score=174.51 Aligned_cols=180 Identities=17% Similarity=0.215 Sum_probs=129.4
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--c-cCCceeeeccCCC
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--S-IPGNTVAVQADMP 260 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--~-~~~~~~~~~~~~~ 260 (394)
..+++++++.+.+ .++|+||||||||||+|+|+|...++ +.++. +.+.+.+.. . .....++.|.+..
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g------~~~G~--I~inG~~~~~~~~~~~igyv~Q~d~~ 964 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YIEGD--IRISGFPKKQETFARISGYCEQNDIH 964 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC------cccce--EEECCccCChHHhhhheEEEcccccc
Confidence 4699999999888 99999999999999999999986311 11222 334443321 1 1234566777666
Q ss_pred CCcccccccccch----------hhhhhcCCccccccceeec---C-C-----CCCc-hhhhhhhcccChHHHHHHHhhc
Q 016165 261 FSGLTTFGTAFLS----------KFECSQMPHSLLEHITLVD---T-P-----GVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 261 ~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~D---t-~-----g~ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
+..++..++..+. ..+..+.++++++.+++.+ + + ..+| ||+||+. ||++++.+
T Consensus 965 ~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvs-------Ia~aL~~~ 1037 (1470)
T PLN03140 965 SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLT-------IAVELVAN 1037 (1470)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHH-------HHHHHhhC
Confidence 6667766665221 1122334567777777754 2 2 3578 9999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH-HHHHH-HhHhhhcc-ceeeecCcc
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ-QLMRV-YGALMWSL-GKVLNTPEV 388 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~-~~~~~-~~~~~~~~-G~i~~~~~~ 388 (394)
|+++++ ++|+.. ...++++++.+.+.|.+||+++ |++. .+.+. |+++++++ |+++..|++
T Consensus 1038 P~lL~LDEPTsgLD~~~---a~~v~~~L~~l~~~g~tVI~t~-----Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1038 PSIIFMDEPTSGLDARA---AAIVMRTVRNTVDTGRTVVCTI-----HQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred CCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----CCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 999999 888876 7888999999988888888888 6554 34444 99999986 899887764
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.61 E-value=9.3e-16 Score=161.15 Aligned_cols=181 Identities=18% Similarity=0.210 Sum_probs=114.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeE------EEEecCccc
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFV------VVMSGVDDR 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~------i~~~~~~~~ 246 (394)
-++++.|++ ..++++++|++.+ +++|+|+||||||||+++|+|... |..|... +.+..+...
T Consensus 7 ~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--------p~~G~I~~~~~~~~~~l~q~~~ 76 (635)
T PRK11147 7 HGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--------LDDGRIIYEQDLIVARLQQDPP 76 (635)
T ss_pred eeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--------CCCeEEEeCCCCEEEEeccCCC
Confidence 455677876 5699999999887 999999999999999999999884 2222211 111111100
Q ss_pred ccCCceeeeccC-CCCC----cccc-------------cccc-cch----------hhhhhcCCccccccceee-c-CCC
Q 016165 247 SIPGNTVAVQAD-MPFS----GLTT-------------FGTA-FLS----------KFECSQMPHSLLEHITLV-D-TPG 295 (394)
Q Consensus 247 ~~~~~~~~~~~~-~~~~----g~~~-------------~~~~-~~~----------~~~~~~~~~~~l~~~~l~-D-t~g 295 (394)
......+.+.. ..+. .... ..+. ... .......+.++++.+++. + .++
T Consensus 77 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 155 (635)
T PRK11147 77 -RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALS 155 (635)
T ss_pred -CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchh
Confidence 00000000000 0000 0000 0000 000 001123455667777774 3 678
Q ss_pred CCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHH
Q 016165 296 VLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLM 369 (394)
Q Consensus 296 ~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~ 369 (394)
.+| ||+||+. +|++++.+|+++|+ .+|+.. ...+.++|..+ +.+||+|+ |+...+.
T Consensus 156 ~LSgGekqRv~-------LAraL~~~P~lLLLDEPt~~LD~~~---~~~L~~~L~~~---~~tvlivs-----Hd~~~l~ 217 (635)
T PRK11147 156 SLSGGWLRKAA-------LGRALVSNPDVLLLDEPTNHLDIET---IEWLEGFLKTF---QGSIIFIS-----HDRSFIR 217 (635)
T ss_pred hcCHHHHHHHH-------HHHHHhcCCCEEEEcCCCCccCHHH---HHHHHHHHHhC---CCEEEEEe-----CCHHHHH
Confidence 899 9999999 99999999999999 788765 55566666655 34777777 8888888
Q ss_pred HH-HhHhhhccceeee
Q 016165 370 RV-YGALMWSLGKVLN 384 (394)
Q Consensus 370 ~~-~~~~~~~~G~i~~ 384 (394)
.+ ++++.+++|+++.
T Consensus 218 ~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 218 NMATRIVDLDRGKLVS 233 (635)
T ss_pred HhcCeEEEEECCEEEE
Confidence 76 8999999999973
No 358
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.61 E-value=4.5e-16 Score=175.50 Aligned_cols=184 Identities=15% Similarity=0.227 Sum_probs=122.3
Q ss_pred cCCceeeeeecCCc-CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEe-cCcccc
Q 016165 172 LKPLEVTYRFNDFV-SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMS-GVDDRS 247 (394)
Q Consensus 172 ~~~l~~~~~~~~~~-~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~-~~~~~~ 247 (394)
++.-++++.|+... ..++++++|++++ +++|+|+||||||||+++|+|.+. |..|. +.++ +.+...
T Consensus 383 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--------p~~G~--I~i~~g~~i~~ 452 (1466)
T PTZ00265 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--------PTEGD--IIINDSHNLKD 452 (1466)
T ss_pred EEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--------CCCCe--EEEeCCcchhh
Confidence 44456778887421 3599999999988 999999999999999999999993 44444 2222 222211
Q ss_pred c------CCceeeeccCCCCCcccccccccchhh----------------------------------------------
Q 016165 248 I------PGNTVAVQADMPFSGLTTFGTAFLSKF---------------------------------------------- 275 (394)
Q Consensus 248 ~------~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------------------------------------- 275 (394)
+ ....++.|+...|.+ +..+|+.+...
T Consensus 453 ~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1466)
T PTZ00265 453 INLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDS 531 (1466)
T ss_pred CCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccch
Confidence 1 234455566555543 34333321100
Q ss_pred ------------hhhcCCcccccccee---------------ecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-
Q 016165 276 ------------ECSQMPHSLLEHITL---------------VDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (394)
Q Consensus 276 ------------~~~~~~~~~l~~~~l---------------~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl- 326 (394)
...+.+.++++.+++ .+.+..+| ||+||++ |||+++++|+++|+
T Consensus 532 ~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRia-------IARAll~~P~ILlLD 604 (1466)
T PTZ00265 532 NELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRIS-------IARAIIRNPKILILD 604 (1466)
T ss_pred hhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHH-------HHHHHhcCCCEEEEe
Confidence 000011122222222 12356688 9999999 99999999999999
Q ss_pred ----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 327 ----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 327 ----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
.+|... ...+.+.|+.+.+ ++.++|+|+ |+...+..+|+++++++|+
T Consensus 605 EpTSaLD~~s---e~~i~~~L~~~~~~~g~TvIiIs-----Hrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 605 EATSSLDNKS---EYLVQKTINNLKGNENRITIIIA-----HRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred CcccccCHHH---HHHHHHHHHHHhhcCCCEEEEEe-----CCHHHHHhCCEEEEEeCCc
Confidence 888876 7778888888865 478888888 7777776569999998873
No 359
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.61 E-value=2.1e-15 Score=156.81 Aligned_cols=185 Identities=20% Similarity=0.266 Sum_probs=140.8
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcc--cccC-CceeeeccCCC
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD--RSIP-GNTVAVQADMP 260 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~--~~~~-~~~~~~~~~~~ 260 (394)
+.++++++...++ ..||+||+|||||||+|+|+|....+ ......+.++++.. ..+. -..++.|++..
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~-------~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l 115 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG-------LKLSGEILLNGRPRDSRSFRKISGYVQQDDVL 115 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC-------CcceEEEEECCccCchhhhhheeEEEcccccc
Confidence 6799999988887 99999999999999999999998411 12222355566322 2222 34557888888
Q ss_pred CCccccccccc------ch----hhhhhcCCccccccceeec-------CCCC--Cc-hhhhhhhcccChHHHHHHHhhc
Q 016165 261 FSGLTTFGTAF------LS----KFECSQMPHSLLEHITLVD-------TPGV--LS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 261 ~~g~~~~~~~~------~~----~~~~~~~~~~~l~~~~l~D-------t~g~--ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
++.++..+... ++ ..+..++++++++.+++.+ .++. +| ||++|+. +|..++.+
T Consensus 116 ~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvs-------ia~Ell~~ 188 (613)
T KOG0061|consen 116 LPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVS-------IALELLTD 188 (613)
T ss_pred cccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHH-------HHHHHHcC
Confidence 88888877653 22 2466777888888888764 2222 45 8999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCccce
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~ 390 (394)
|.++++ ++|... ..++.++|+++.+.|++||+.+|. ...+....+|+++++..|++++.|.+.+
T Consensus 189 P~iLflDEPTSGLDS~s---A~~vv~~Lk~lA~~grtVi~tIHQ---Pss~lf~lFD~l~lLs~G~~vy~G~~~~ 257 (613)
T KOG0061|consen 189 PSILFLDEPTSGLDSFS---ALQVVQLLKRLARSGRTVICTIHQ---PSSELFELFDKLLLLSEGEVVYSGSPRE 257 (613)
T ss_pred CCEEEecCCCCCcchhh---HHHHHHHHHHHHhCCCEEEEEEeC---CcHHHHHHHhHhhhhcCCcEEEecCHHH
Confidence 999999 889876 788899999999889999988853 3334444459999999999999887654
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.60 E-value=1.2e-15 Score=161.01 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=113.5
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCc-ccceeEEEEecCcccccCCce
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP-TTDRFVVVMSGVDDRSIPGNT 252 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p-~t~r~~i~~~~~~~~~~~~~~ 252 (394)
++++.|++. ..++++++|++.. +++|+|+||||||||+++|+|...| .++.. ...+..+.+..+
T Consensus 513 ~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p---~~G~I~~~~~~~igyv~Q--------- 579 (718)
T PLN03073 513 DASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP---SSGTVFRSAKVRMAVFSQ--------- 579 (718)
T ss_pred eeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCceEEECCceeEEEEec---------
Confidence 556677531 3589999999887 9999999999999999999999842 11110 011112222222
Q ss_pred eeeccCCCCCcccccccc--cchh---hhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhcC
Q 016165 253 VAVQADMPFSGLTTFGTA--FLSK---FECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~--~~~~---~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~ 321 (394)
... .++....+. .+.. ....+.+..+++.+++.+ .++.+| ||+||+. +|++++.+|
T Consensus 580 ----~~~--~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRva-------LAraL~~~p 646 (718)
T PLN03073 580 ----HHV--DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA-------FAKITFKKP 646 (718)
T ss_pred ----ccc--ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHH-------HHHHHhcCC
Confidence 211 111111110 0000 011223456677777752 678899 9999999 999999999
Q ss_pred CEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee-ecCcc
Q 016165 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL-NTPEV 388 (394)
Q Consensus 322 dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~-~~~~~ 388 (394)
+++|+ .+|+.. ...+.+.+... +.++|+++ |+...+..+ ++++++.+|+++ ..|..
T Consensus 647 ~lLLLDEPT~~LD~~s---~~~l~~~L~~~---~gtvIivS-----Hd~~~i~~~~drv~~l~~G~i~~~~g~~ 709 (718)
T PLN03073 647 HILLLDEPSNHLDLDA---VEALIQGLVLF---QGGVLMVS-----HDEHLISGSVDELWVVSEGKVTPFHGTF 709 (718)
T ss_pred CEEEEcCCCCCCCHHH---HHHHHHHHHHc---CCEEEEEE-----CCHHHHHHhCCEEEEEECCEEEEeCCCH
Confidence 99999 777754 44444444433 34777777 888888877 999999999987 44543
No 361
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.60 E-value=1.2e-15 Score=166.49 Aligned_cols=194 Identities=21% Similarity=0.303 Sum_probs=136.1
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
++--+++.+|......+|+|+++.+.+ +|+|||++|||||||+++|.+.. .|..|+ |.+++.+...++
T Consensus 1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~--------e~~~G~--I~IDgvdI~~ig 1208 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV--------EPAEGE--ILIDGVDISKIG 1208 (1381)
T ss_pred EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc--------CccCCe--EEEcCeeccccc
Confidence 333456678888777899999999998 99999999999999999999998 555555 455666655443
Q ss_pred ------CceeeeccCCCCCccccccccc----chhhh---------hhcCCccccccc--eeecCCCCCc-hhhhhhhcc
Q 016165 250 ------GNTVAVQADMPFSGLTTFGTAF----LSKFE---------CSQMPHSLLEHI--TLVDTPGVLS-GEKQRTQRA 307 (394)
Q Consensus 250 ------~~~~~~~~~~~~~g~~~~~~~~----~~~~~---------~~~~~~~~l~~~--~l~Dt~g~ls-Ge~qrv~~~ 307 (394)
..++.+|+++.|.|...+ |.. ....+ .++.+.+.-..+ .+.|--.-.| ||||-+.
T Consensus 1209 L~dLRsrlsIIPQdPvLFsGTvR~-NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlC-- 1285 (1381)
T KOG0054|consen 1209 LHDLRSRLSIIPQDPVLFSGTVRF-NLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLC-- 1285 (1381)
T ss_pred HHHHHhcCeeeCCCCceecCcccc-ccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHH--
Confidence 567788888888874332 221 11111 111111111111 1222233356 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+|||++++++++++ .+|... ...+.+.|++-- ++++|+.|. |..+-+...|++++++.|++
T Consensus 1286 -----LARALLr~skILvLDEATAsVD~~T---D~lIQ~tIR~~F-~dcTVltIA-----HRl~TVmd~DrVlVld~G~v 1351 (1381)
T KOG0054|consen 1286 -----LARALLRKSKILVLDEATASVDPET---DALIQKTIREEF-KDCTVLTIA-----HRLNTVMDSDRVLVLDAGRV 1351 (1381)
T ss_pred -----HHHHHhccCCEEEEecccccCChHH---HHHHHHHHHHHh-cCCeEEEEe-----eccchhhhcCeEEEeeCCeE
Confidence 99999999999999 777765 444455555432 378899999 66677888899999999999
Q ss_pred eecCccceee
Q 016165 383 LNTPEVVRVY 392 (394)
Q Consensus 383 ~~~~~~~~v~ 392 (394)
++.+.+.+++
T Consensus 1352 ~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1352 VEFDSPAELL 1361 (1381)
T ss_pred eecCChHHHH
Confidence 9988876654
No 362
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.60 E-value=7.7e-16 Score=173.31 Aligned_cols=185 Identities=16% Similarity=0.162 Sum_probs=131.7
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----c-CCceeeeccC
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----I-PGNTVAVQAD 258 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~-~~~~~~~~~~ 258 (394)
+.+++++++.+++ +++|+||||||||||+|+|+|... . ...|.++. +.+++.+... . ....++.|.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~--~--~~~~~~G~--I~~~G~~~~~~~~~~r~~i~yv~Q~d 147 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD--G--FHIGVEGV--ITYDGITPEEIKKHYRGDVVYNAETD 147 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC--C--CCCCceeE--EEECCEehHHHHhhcCceeEEecccc
Confidence 5699999998887 999999999999999999999862 1 01223333 4444543221 1 1245566776
Q ss_pred CCCCcccccccccch--------------hhhhhcC-Cccccccceeec---C------CCCCc-hhhhhhhcccChHHH
Q 016165 259 MPFSGLTTFGTAFLS--------------KFECSQM-PHSLLEHITLVD---T------PGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 259 ~~~~g~~~~~~~~~~--------------~~~~~~~-~~~~l~~~~l~D---t------~g~ls-Ge~qrv~~~~~~~~i 313 (394)
..+..++..++..+. +.+..+. .+.+++.+++.+ | +..+| |||||+. |
T Consensus 148 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvs-------I 220 (1394)
T TIGR00956 148 VHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVS-------I 220 (1394)
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHH-------H
Confidence 667777666554221 0111112 344677777764 2 34578 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCH-HHHHHH-HhHhhhccceeeec
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDT-QQLMRV-YGALMWSLGKVLNT 385 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~-~~~~~~-~~~~~~~~G~i~~~ 385 (394)
|++++.+|+++++ ++|+.. ...+.++|+++.+. +.++++++ |++ .++.+. |+++++++|+++..
T Consensus 221 A~aL~~~p~vlllDEPTsgLD~~~---~~~i~~~L~~la~~~g~tvii~~-----Hq~~~~i~~l~D~v~~L~~G~iv~~ 292 (1394)
T TIGR00956 221 AEASLGGAKIQCWDNATRGLDSAT---ALEFIRALKTSANILDTTPLVAI-----YQCSQDAYELFDKVIVLYEGYQIYF 292 (1394)
T ss_pred HHHHHhCCCEEEEeCCCCCcCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCCCHHHHHhhceEEEEeCCeEEEE
Confidence 9999999999999 899877 88889999999764 78888888 554 566665 99999999999988
Q ss_pred Ccccee
Q 016165 386 PEVVRV 391 (394)
Q Consensus 386 ~~~~~v 391 (394)
|+..++
T Consensus 293 G~~~~~ 298 (1394)
T TIGR00956 293 GPADKA 298 (1394)
T ss_pred CCHHHH
Confidence 776544
No 363
>PRK13409 putative ATPase RIL; Provisional
Probab=99.59 E-value=1.5e-15 Score=157.45 Aligned_cols=183 Identities=19% Similarity=0.137 Sum_probs=113.2
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCC-CCcCCCcccceeEEEEecCccccc-----
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPG-AHIGPEPTTDRFVVVMSGVDDRSI----- 248 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~-~~vs~~p~t~r~~i~~~~~~~~~~----- 248 (394)
++++|+.. ..+|.+++ .+.+ +++|+|+||||||||+++|+|...|. ..+...+......-.+.|.+....
T Consensus 79 ~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 79 PVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred ceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 34577651 24889998 5655 99999999999999999999998530 011100100000000112111000
Q ss_pred ---CCceeeeccCCCCCcc---cccccccchhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHH
Q 016165 249 ---PGNTVAVQADMPFSGL---TTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (394)
Q Consensus 249 ---~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral 317 (394)
....+.++....+..+ +...+. ........+.++++.+++.+ .++.+| ||+||++ +|+++
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l--~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~-------ia~al 227 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELL--KKVDERGKLDEVVERLGLENILDRDISELSGGELQRVA-------IAAAL 227 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHH--HhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHH
Confidence 0011111111111100 111111 11122334566777777643 678899 9999999 99999
Q ss_pred hhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc
Q 016165 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL 379 (394)
Q Consensus 318 ~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~ 379 (394)
+.+|+++|+ .+|+.. ...+.++++.+.+ +.++|++. |+.+.+..+ |++++++.
T Consensus 228 ~~~p~lllLDEPts~LD~~~---~~~l~~~i~~l~~-g~tvIivs-----Hd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 228 LRDADFYFFDEPTSYLDIRQ---RLNVARLIRELAE-GKYVLVVE-----HDLAVLDYLADNVHIAYG 286 (590)
T ss_pred hcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHC-CCEEEEEe-----CCHHHHHHhCCEEEEEeC
Confidence 999999999 788876 7888899999987 88888888 888888777 88888865
No 364
>PLN03232 ABC transporter C family member; Provisional
Probab=99.59 E-value=1.3e-15 Score=173.09 Aligned_cols=184 Identities=15% Similarity=0.146 Sum_probs=116.7
Q ss_pred CceeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCC
Q 016165 174 PLEVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPG 250 (394)
Q Consensus 174 ~l~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~ 250 (394)
--++++.|+.. .+.+++|+++++++ .++|+|++|||||||+++|+|... |..+.... ....
T Consensus 617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--------~~~G~i~~--------~~~~ 680 (1495)
T PLN03232 617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--------HAETSSVV--------IRGS 680 (1495)
T ss_pred EEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--------ccCCCEEE--------ecCc
Confidence 34567777642 24589999999887 999999999999999999999994 22221100 0112
Q ss_pred ceeeeccCCCCCcccccccccchhhhhhcCCcccccccee---------------ecCCCCCc-hhhhhhhcccChHHHH
Q 016165 251 NTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL---------------VDTPGVLS-GEKQRTQRAYDFTGVT 314 (394)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l---------------~Dt~g~ls-Ge~qrv~~~~~~~~ia 314 (394)
..++.|+...+++ +..+|+.+....+.+...++++...+ -+.-..+| ||+||++ +|
T Consensus 681 Iayv~Q~p~Lf~g-TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa-------LA 752 (1495)
T PLN03232 681 VAYVPQVSWIFNA-TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVS-------MA 752 (1495)
T ss_pred EEEEcCccccccc-cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHH-------HH
Confidence 3444555555554 34444422111111111222222221 11223467 8999999 99
Q ss_pred HHHhhcCCEEEE-----EeCCCCCCchHHHH-HHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCcc
Q 016165 315 SWFAAKCDLILL-----LFDPHKLDISDEFK-RVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEV 388 (394)
Q Consensus 315 ral~~~~dllLl-----~lD~~~~~~~~~~~-~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~ 388 (394)
||++++|+++|+ .+|+.. ...++ +.+... .+++++|+|+ |+.+.+...|+++++++|+++..|+.
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t---~~~I~~~~l~~~-l~~kT~IlvT-----H~~~~l~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHV---AHQVFDSCMKDE-LKGKTRVLVT-----NQLHFLPLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHH---HHHHHHHHhhhh-hcCCEEEEEE-----CChhhHHhCCEEEEEeCCEEEEecCH
Confidence 999999999999 777654 44443 334432 2467889998 66666666799999999999987764
Q ss_pred ce
Q 016165 389 VR 390 (394)
Q Consensus 389 ~~ 390 (394)
.+
T Consensus 824 ~e 825 (1495)
T PLN03232 824 AE 825 (1495)
T ss_pred HH
Confidence 43
No 365
>PLN03130 ABC transporter C family member; Provisional
Probab=99.59 E-value=1.8e-15 Score=172.28 Aligned_cols=184 Identities=16% Similarity=0.188 Sum_probs=119.2
Q ss_pred CCceeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCccc-ceeEEEEecCccccc
Q 016165 173 KPLEVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT-DRFVVVMSGVDDRSI 248 (394)
Q Consensus 173 ~~l~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t-~r~~i~~~~~~~~~~ 248 (394)
.--++++.|+.. ...+++++++++++ .++|+|++|||||||+++|+|... |.. +...+ .
T Consensus 616 ~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--------~~~GG~I~l---------~ 678 (1622)
T PLN03130 616 SIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--------PRSDASVVI---------R 678 (1622)
T ss_pred EEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--------cCCCceEEE---------c
Confidence 334567777532 14589999999888 999999999999999999999983 333 22111 1
Q ss_pred CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceee---------------cCCCCCc-hhhhhhhcccChHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---------------DTPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------------Dt~g~ls-Ge~qrv~~~~~~~~ 312 (394)
....++.|+...+++ +..+|+.+....+.+...++++..++. +.-..+| ||+||++
T Consensus 679 ~~Iayv~Q~p~Lfng-TIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa------- 750 (1622)
T PLN03130 679 GTVAYVPQVSWIFNA-TVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS------- 750 (1622)
T ss_pred CeEEEEcCccccCCC-CHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH-------
Confidence 123445566665554 444444222111122222222222221 1222367 8999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHH-HHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecC
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFK-RVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTP 386 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~-~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~ 386 (394)
+|||++.+|+++|+ .+|+.. ...++ +.+..+. +++++|+|+ |..+.+...|+++++++|+++..|
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~---~~~I~~~~l~~~l-~~kTvIlVT-----H~l~~l~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHV---GRQVFDKCIKDEL-RGKTRVLVT-----NQLHFLSQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHH---HHHHHHHHhhHHh-cCCEEEEEE-----CCHhHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999 777654 44443 3444332 468889998 666666667999999999999877
Q ss_pred ccce
Q 016165 387 EVVR 390 (394)
Q Consensus 387 ~~~~ 390 (394)
...+
T Consensus 822 t~~e 825 (1622)
T PLN03130 822 TYEE 825 (1622)
T ss_pred CHHH
Confidence 5443
No 366
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.58 E-value=1.8e-15 Score=147.68 Aligned_cols=185 Identities=19% Similarity=0.212 Sum_probs=125.7
Q ss_pred cCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC------Ccee
Q 016165 182 NDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP------GNTV 253 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~------~~~~ 253 (394)
.+..+.++++++|.+.+ .++|+||+|||||||.++|.|.-. |..+. +..++-+...++ ...|
T Consensus 345 Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--------p~~G~--VRLDga~l~qWd~e~lG~hiGY 414 (580)
T COG4618 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--------PTSGS--VRLDGADLRQWDREQLGRHIGY 414 (580)
T ss_pred CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--------cCCCc--EEecchhhhcCCHHHhccccCc
Confidence 45557899999999988 999999999999999999999883 32332 333443333222 2334
Q ss_pred eeccCCCCCcccccccc-cchhh-------h--hhcCCccccccc------eeecCCCCCc-hhhhhhhcccChHHHHHH
Q 016165 254 AVQADMPFSGLTTFGTA-FLSKF-------E--CSQMPHSLLEHI------TLVDTPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 254 ~~~~~~~~~g~~~~~~~-~~~~~-------~--~~~~~~~~l~~~------~l~Dt~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
.+|+--.|.|. .-+|+ .+... + ...-++++.-++ .+-|.--.+| |||||+. +||+
T Consensus 415 LPQdVeLF~GT-IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIa-------LARA 486 (580)
T COG4618 415 LPQDVELFDGT-IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIA-------LARA 486 (580)
T ss_pred CcccceecCCc-HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHH-------HHHH
Confidence 44444444442 22222 11111 0 111123332222 1122223456 8999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCcccee
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~v 391 (394)
++.+|.++++ ++|... ...+.+-|..++++|.++|+|+ |.+..+...|++.++++|++...|+..+|
T Consensus 487 lYG~P~lvVLDEPNsNLD~~G---E~AL~~Ai~~~k~rG~~vvvia-----HRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEG---EAALAAAILAAKARGGTVVVIA-----HRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HcCCCcEEEecCCCCCcchhH---HHHHHHHHHHHHHcCCEEEEEe-----cCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 9999999999 788776 6667788889999999999999 77888888899999999999877766655
Q ss_pred e
Q 016165 392 Y 392 (394)
Q Consensus 392 ~ 392 (394)
.
T Consensus 559 L 559 (580)
T COG4618 559 L 559 (580)
T ss_pred H
Confidence 3
No 367
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.57 E-value=2.7e-15 Score=170.60 Aligned_cols=186 Identities=18% Similarity=0.203 Sum_probs=117.3
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCC
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPG 250 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~ 250 (394)
..-++++.|++....+++++++++++ .++|+|+||||||||+++|+|... |..|...+ .+ .
T Consensus 638 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--------~~~G~i~~--~g-------~ 700 (1522)
T TIGR00957 638 TVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--------KVEGHVHM--KG-------S 700 (1522)
T ss_pred EEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--------cCCcEEEE--CC-------E
Confidence 33456677764324689999999887 999999999999999999999983 33333211 11 1
Q ss_pred ceeeeccCCCCCcccccccccchh----hhhhcC--Cccccccce---------eecCCCCCc-hhhhhhhcccChHHHH
Q 016165 251 NTVAVQADMPFSGLTTFGTAFLSK----FECSQM--PHSLLEHIT---------LVDTPGVLS-GEKQRTQRAYDFTGVT 314 (394)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~--~~~~l~~~~---------l~Dt~g~ls-Ge~qrv~~~~~~~~ia 314 (394)
..++.|....+++ +..+|+.+.. ....+. +..+.+.+. +.+....+| ||+||+. +|
T Consensus 701 i~yv~Q~~~l~~~-Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRia-------LA 772 (1522)
T TIGR00957 701 VAYVPQQAWIQND-SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVS-------LA 772 (1522)
T ss_pred EEEEcCCccccCC-cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHH-------HH
Confidence 2233343333322 3333331111 000000 001111111 223455678 9999999 99
Q ss_pred HHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHh--cCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCc
Q 016165 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLR--GHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPE 387 (394)
Q Consensus 315 ral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~--~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~ 387 (394)
|+++.+|+++|+ .+|+.. ...+++.+.... .+++++|+|+ |+.+.+...|+++.+++|+++..|+
T Consensus 773 RAl~~~~~illLDEp~saLD~~~---~~~i~~~l~~~~~~~~~~tvIlvT-----H~~~~l~~~D~ii~l~~G~i~~~g~ 844 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHV---GKHIFEHVIGPEGVLKNKTRILVT-----HGISYLPQVDVIIVMSGGKISEMGS 844 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHH---HHHHHHHHhhhhhhhcCCEEEEEe-----CChhhhhhCCEEEEecCCeEEeeCC
Confidence 999999999999 788765 566666554321 2367888888 6666666679999999999988776
Q ss_pred ccee
Q 016165 388 VVRV 391 (394)
Q Consensus 388 ~~~v 391 (394)
..++
T Consensus 845 ~~~l 848 (1522)
T TIGR00957 845 YQEL 848 (1522)
T ss_pred HHHH
Confidence 5443
No 368
>PLN03140 ABC transporter G family member; Provisional
Probab=99.57 E-value=1.9e-15 Score=170.00 Aligned_cols=184 Identities=17% Similarity=0.214 Sum_probs=127.6
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---cCCceeeeccCCC
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---IPGNTVAVQADMP 260 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---~~~~~~~~~~~~~ 260 (394)
..+|+|+++.+++ +++|+||||||||||+|+|+|...|...+ .++ +.+++.+... .....++.|.+..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~-----~G~--I~~nG~~~~~~~~~~~i~yv~Q~d~~ 250 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKV-----SGE--ITYNGYRLNEFVPRKTSAYISQNDVH 250 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcc-----eeE--EEECCEechhhcccceeEEecccccC
Confidence 5699999999888 99999999999999999999998421111 222 3344433221 1223455666666
Q ss_pred CCcccccccccch-h----------------hhhh------------------------cCCccccccceeec-------
Q 016165 261 FSGLTTFGTAFLS-K----------------FECS------------------------QMPHSLLEHITLVD------- 292 (394)
Q Consensus 261 ~~g~~~~~~~~~~-~----------------~~~~------------------------~~~~~~l~~~~l~D------- 292 (394)
+..++..++..+. . .+.. ..++.+++.+++.+
T Consensus 251 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg 330 (1470)
T PLN03140 251 VGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG 330 (1470)
T ss_pred CCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC
Confidence 6666555544211 0 0000 01244666777753
Q ss_pred --CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCcc
Q 016165 293 --TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQV 363 (394)
Q Consensus 293 --t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~ 363 (394)
.+..+| ||+||+. +|++++.+|+++++ ++|... ..++.+.|+++.+ .+.++++++ |
T Consensus 331 ~~~~rglSGGerkRVs-------ia~aL~~~p~vlllDEPTsGLDs~t---~~~i~~~Lr~la~~~g~Tviis~-----H 395 (1470)
T PLN03140 331 DEMIRGISGGQKKRVT-------TGEMIVGPTKTLFMDEISTGLDSST---TYQIVKCLQQIVHLTEATVLMSL-----L 395 (1470)
T ss_pred CccccCCCcccceeee-------ehhhhcCCCcEEEEeCCCcCccHHH---HHHHHHHHHHHHHhcCCEEEEEe-----c
Confidence 234567 9999999 99999999999999 899877 8888999999865 477888887 5
Q ss_pred CH-HHHHHH-HhHhhhccceeeecCcccee
Q 016165 364 DT-QQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 364 ~~-~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
.+ .++... |+++++.+|+++..|+..++
T Consensus 396 qp~~~i~~lfD~vilL~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 396 QPAPETFDLFDDIILLSEGQIVYQGPRDHI 425 (1470)
T ss_pred CCCHHHHHHhheEEEeeCceEEEeCCHHHH
Confidence 43 455555 99999999999988876544
No 369
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.56 E-value=2.8e-14 Score=134.61 Aligned_cols=124 Identities=26% Similarity=0.399 Sum_probs=86.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||+|+|+|... ++++..|.||+..+. +....++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~-----------------------~i~~~~~--------- 47 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRIS-----------------------GIHTTGA--------- 47 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEE-----------------------EEEEcCC---------
Confidence 589999999999999999999886 788999999886432 1000011
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
..+.++||||+.... ....+. +...++..+.++|++++++|++... ... ..++..+...+.|+++|.|
T Consensus 48 -------~qii~vDTPG~~~~~-~~l~~~--~~~~~~~~l~~aDvvl~VvD~~~~~-~~~-~~i~~~l~~~~~p~ilV~N 115 (270)
T TIGR00436 48 -------SQIIFIDTPGFHEKK-HSLNRL--MMKEARSAIGGVDLILFVVDSDQWN-GDG-EFVLTKLQNLKRPVVLTRN 115 (270)
T ss_pred -------cEEEEEECcCCCCCc-chHHHH--HHHHHHHHHhhCCEEEEEEECCCCC-chH-HHHHHHHHhcCCCEEEEEE
Confidence 157899999987521 111100 0113556789999999999998632 222 4455566666789999999
Q ss_pred cCCccCHHHH
Q 016165 359 KADQVDTQQL 368 (394)
Q Consensus 359 K~Dl~~~~~~ 368 (394)
|+|+.+.+..
T Consensus 116 K~Dl~~~~~~ 125 (270)
T TIGR00436 116 KLDNKFKDKL 125 (270)
T ss_pred CeeCCCHHHH
Confidence 9999765543
No 370
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=5.6e-15 Score=135.70 Aligned_cols=89 Identities=20% Similarity=0.267 Sum_probs=71.2
Q ss_pred cccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhcC--CEEEE-----EeCCCCCCchHHHHHHHHHHhcC
Q 016165 283 SLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC--DLILL-----LFDPHKLDISDEFKRVITSLRGH 349 (394)
Q Consensus 283 ~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~--dllLl-----~lD~~~~~~~~~~~~~l~~l~~~ 349 (394)
++++.+++.+ .+..+| ||+||+. +|++++.+| +++|+ ++|+.. ...+.++++.+++.
T Consensus 119 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~-------laral~~~p~~~llllDEPt~gLD~~~---~~~l~~~l~~~~~~ 188 (226)
T cd03270 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIR-------LATQIGSGLTGVLYVLDEPSIGLHPRD---NDRLIETLKRLRDL 188 (226)
T ss_pred HHHHHCCCCcccccCccCcCCHHHHHHHH-------HHHHHHhCCCCCEEEEeCCccCCCHHH---HHHHHHHHHHHHhC
Confidence 4566666532 678889 9999999 999999998 59998 788776 78888999888777
Q ss_pred CCeEEEEEecCCccCHHHHHHHHhHhhh------ccceeeecC
Q 016165 350 DDKIRVVLNKADQVDTQQLMRVYGALMW------SLGKVLNTP 386 (394)
Q Consensus 350 ~~~viiv~nK~Dl~~~~~~~~~~~~~~~------~~G~i~~~~ 386 (394)
+.++++++ |+.+.+..+|+++++ ++|++++.|
T Consensus 189 g~tii~it-----H~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 189 GNTVLVVE-----HDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCEEEEEE-----eCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 88888888 666666534999999 889988754
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.55 E-value=7.2e-15 Score=149.16 Aligned_cols=183 Identities=22% Similarity=0.241 Sum_probs=115.4
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccce-eEEEEecCcccccCC
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR-FVVVMSGVDDRSIPG 250 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r-~~i~~~~~~~~~~~~ 250 (394)
..++++.|++ +.+++++++++.+ +|+|||+|||||||||++|+|... +.++...... ..+.+..|+....+.
T Consensus 6 ~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 6 LENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKGLRVGYLSQEPPLDPE 80 (530)
T ss_pred EeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCCceEEEeCCCCCcCCC
Confidence 3456678877 7799999999988 999999999999999999999994 2222211111 124444444333322
Q ss_pred ceeeeccCCCCCccccccccc---------------------------chhhhhhcCCccccccceeec---CCCCCc-h
Q 016165 251 NTVAVQADMPFSGLTTFGTAF---------------------------LSKFECSQMPHSLLEHITLVD---TPGVLS-G 299 (394)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~l~D---t~g~ls-G 299 (394)
.++.... +.+........ +........+..++..+++.+ ..+.+| |
T Consensus 81 ~tv~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG 157 (530)
T COG0488 81 KTVLDYV---IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGG 157 (530)
T ss_pred ccHHHHH---HhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHH
Confidence 1110000 00000000000 000112344556677777764 568888 8
Q ss_pred hhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHH-hcCCCeEEEEEecCCccCHHHHHHH-H
Q 016165 300 EKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSL-RGHDDKIRVVLNKADQVDTQQLMRV-Y 372 (394)
Q Consensus 300 e~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l-~~~~~~viiv~nK~Dl~~~~~~~~~-~ 372 (394)
++.|+. +|+++..+||++|+ .||..+ ..||+.. +....++|+|. ||-..+..+ .
T Consensus 158 ~r~Rv~-------LA~aL~~~pDlLLLDEPTNHLD~~~-------i~WLe~~L~~~~gtviiVS-----HDR~FLd~V~t 218 (530)
T COG0488 158 WRRRVA-------LARALLEEPDLLLLDEPTNHLDLES-------IEWLEDYLKRYPGTVIVVS-----HDRYFLDNVAT 218 (530)
T ss_pred HHHHHH-------HHHHHhcCCCEEEEcCCCcccCHHH-------HHHHHHHHHhCCCcEEEEe-----CCHHHHHHHhh
Confidence 999999 99999999999998 555433 4455443 33333788888 888888887 7
Q ss_pred hHhhhccceee
Q 016165 373 GALMWSLGKVL 383 (394)
Q Consensus 373 ~~~~~~~G~i~ 383 (394)
+++.++.|++.
T Consensus 219 ~I~~ld~g~l~ 229 (530)
T COG0488 219 HILELDRGKLT 229 (530)
T ss_pred heEEecCCcee
Confidence 88888988774
No 372
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=4.6e-15 Score=139.08 Aligned_cols=97 Identities=29% Similarity=0.482 Sum_probs=89.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcC
Q 016165 7 PIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDG 86 (394)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g 86 (394)
...|+-..++..|+++|..+.| .+|+|||..|+.-+.+|.||+++|++||.|+|+|+||+||.+||+.|-|||.....|
T Consensus 434 ~~ewvv~~dk~~yde~fy~l~p-~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kleg 512 (532)
T KOG1954|consen 434 EAEWVVSKDKPTYDEIFYTLSP-VNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLEG 512 (532)
T ss_pred ccceeeecCCcchHhhhhcccc-cCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheeccc
Confidence 3445556789999999999998 789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCccCCCCCCCCCccc
Q 016165 87 HQVTHDLWNSDVDFQNLKPPAMEG 110 (394)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~lp~~~~ 110 (394)
+.+|.+||+ .+.||+-++
T Consensus 513 help~~lp~------hl~pps~r~ 530 (532)
T KOG1954|consen 513 HELPSELPK------HLVPPSKRG 530 (532)
T ss_pred ccCccccCc------ccCCccccc
Confidence 999999997 788887653
No 373
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.55 E-value=4.8e-15 Score=156.12 Aligned_cols=170 Identities=15% Similarity=0.089 Sum_probs=104.0
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCc-ccceeEEEEecCcccccC
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP-TTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p-~t~r~~i~~~~~~~~~~~ 249 (394)
+--++++.|++. +.+++++++++++ +++|+|+||||||||+++|+|...| .++.. ...+..+.+..|
T Consensus 453 ~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~---~~G~i~~~~~~~i~~v~Q------ 522 (659)
T TIGR00954 453 KFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV---YGGRLTKPAKGKLFYVPQ------ 522 (659)
T ss_pred EEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEeecCCCcEEEECC------
Confidence 344556667432 4699999999887 9999999999999999999998742 11110 001222333333
Q ss_pred CceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec-------------CCCCCc-hhhhhhhcc
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD-------------TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D-------------t~g~ls-Ge~qrv~~~ 307 (394)
....+.+ +..++..+. .....+...++++.+++.+ .++.+| ||+||+.
T Consensus 523 -------~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~-- 592 (659)
T TIGR00954 523 -------RPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIA-- 592 (659)
T ss_pred -------CCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHH--
Confidence 3333322 222222111 0001112233444444432 236788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhc
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWS 378 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~ 378 (394)
+||+++.+|+++|+ .+|+.. ...+.+.++ +.+.++|+++ |+.+.+..+|+++.++
T Consensus 593 -----iARal~~~p~illLDEpts~LD~~~---~~~l~~~l~---~~~~tvI~is-----H~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 593 -----MARLFYHKPQFAILDECTSAVSVDV---EGYMYRLCR---EFGITLFSVS-----HRKSLWKYHEYLLYMD 652 (659)
T ss_pred -----HHHHHHcCCCEEEEeCCccCCCHHH---HHHHHHHHH---HcCCEEEEEe-----CchHHHHhCCEEEEEe
Confidence 99999999999999 677654 444555544 3477888888 6666655557776664
No 374
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.55 E-value=3.4e-15 Score=169.38 Aligned_cols=171 Identities=17% Similarity=0.234 Sum_probs=111.9
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSG 263 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g 263 (394)
+.+++++++++++ .++|+||||||||||+++|+|... |..|...+ .+ ...++.|....+++
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--------~~~G~i~~--~g-------~iayv~Q~~~l~~~ 501 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--------PSEGKIKH--SG-------RISFSPQTSWIMPG 501 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCceEEE--CC-------EEEEEeCCCccCCc
Confidence 4589999998887 999999999999999999999983 33333211 11 12334444444433
Q ss_pred ccccccccchh-h---hhhc-----CCccccccce------eecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-
Q 016165 264 LTTFGTAFLSK-F---ECSQ-----MPHSLLEHIT------LVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (394)
Q Consensus 264 ~~~~~~~~~~~-~---~~~~-----~~~~~l~~~~------l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl- 326 (394)
+..+|+.+.. . ...+ ...+.++.+. +.+.+..+| ||+||+. +||+++.+|+++|+
T Consensus 502 -Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~-------lARAl~~~~~illLD 573 (1490)
T TIGR01271 502 -TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARIS-------LARAVYKDADLYLLD 573 (1490)
T ss_pred -cHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHH-------HHHHHHcCCCEEEEe
Confidence 3333331110 0 0000 0111111111 222456788 9999999 99999999999999
Q ss_pred ----EeCCCCCCchHHHHH-HHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCccce
Q 016165 327 ----LFDPHKLDISDEFKR-VITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 327 ----~lD~~~~~~~~~~~~-~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~ 390 (394)
.+|+.. ...+++ ++..+. +++++|+++ |+.+.+...|+++.+++|+++..|...+
T Consensus 574 ep~saLD~~~---~~~i~~~~l~~~~-~~~tvilvt-----H~~~~~~~ad~ii~l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 574 SPFTHLDVVT---EKEIFESCLCKLM-SNKTRILVT-----SKLEHLKKADKILLLHEGVCYFYGTFSE 633 (1490)
T ss_pred CCcccCCHHH---HHHHHHHHHHHHh-cCCeEEEEe-----CChHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 888765 666665 455554 378888888 6676666669999999999987766544
No 375
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=1.2e-13 Score=128.76 Aligned_cols=128 Identities=25% Similarity=0.401 Sum_probs=96.4
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.++|.|.||+|||||+++|++-. ..+.+.|.||+.....+ +...+
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~Ak---pEvA~YPFTTK~i~vGh-----------------fe~~~-------------- 214 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAK---PEVAPYPFTTKGIHVGH-----------------FERGY-------------- 214 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCC---CccCCCCccccceeEee-----------------eecCC--------------
Confidence 489999999999999999999988 88999999998654311 11122
Q ss_pred hcCCccccccceeecCCCCCc---hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCC--CCchHHHHHHHHHHhcC-CC
Q 016165 278 SQMPHSLLEHITLVDTPGVLS---GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK--LDISDEFKRVITSLRGH-DD 351 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls---Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~--~~~~~~~~~~l~~l~~~-~~ 351 (394)
.+++++||||+++ .|+..+++- -.-|+-+=.+++|+.+|++. .-.-++...++++++.. +.
T Consensus 215 --------~R~QvIDTPGlLDRPl~ErN~IE~q-----Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~ 281 (346)
T COG1084 215 --------LRIQVIDTPGLLDRPLEERNEIERQ-----AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA 281 (346)
T ss_pred --------ceEEEecCCcccCCChHHhcHHHHH-----HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC
Confidence 2889999999998 566666621 23466677899999999976 12234456677777653 57
Q ss_pred eEEEEEecCCccCHHHHHHHH
Q 016165 352 KIRVVLNKADQVDTQQLMRVY 372 (394)
Q Consensus 352 ~viiv~nK~Dl~~~~~~~~~~ 372 (394)
|+++|.||+|.++.+...+..
T Consensus 282 p~v~V~nK~D~~~~e~~~~~~ 302 (346)
T COG1084 282 PIVVVINKIDIADEEKLEEIE 302 (346)
T ss_pred CeEEEEecccccchhHHHHHH
Confidence 899999999999887776653
No 376
>PLN03073 ABC transporter F family; Provisional
Probab=99.53 E-value=6.5e-15 Score=155.56 Aligned_cols=184 Identities=17% Similarity=0.203 Sum_probs=117.5
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCce
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNT 252 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~ 252 (394)
-++++.|++ ..++++++|++.. +++|+|+||||||||+++|+|... . +.|..++ +.+..+.... ...+
T Consensus 181 ~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~---~--g~p~~g~--I~~~~Q~~~g-~~~t 250 (718)
T PLN03073 181 ENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI---D--GIPKNCQ--ILHVEQEVVG-DDTT 250 (718)
T ss_pred ceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---C--CCCCCCE--EEEEeccCCC-CCCC
Confidence 367778876 5699999999988 999999999999999999999752 1 1343343 3332322110 0000
Q ss_pred e---------------------eeccC-CCC------------Ccccccccc--c----chh------hhhhcCCccccc
Q 016165 253 V---------------------AVQAD-MPF------------SGLTTFGTA--F----LSK------FECSQMPHSLLE 286 (394)
Q Consensus 253 ~---------------------~~~~~-~~~------------~g~~~~~~~--~----~~~------~~~~~~~~~~l~ 286 (394)
. ..+.. ... .+... ... . ... .....++..++.
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDK-DAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccch-HHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 0 00000 000 00000 000 0 000 012334455667
Q ss_pred cceee----c-CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEE
Q 016165 287 HITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (394)
Q Consensus 287 ~~~l~----D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~vii 355 (394)
.+++. + .++.+| ||+||+. +|++++.+|+++|+ .+|+.. ...+.++|+.+ +.++|+
T Consensus 330 ~lgl~~~~~~~~~~~LSgG~k~rv~-------LA~aL~~~p~lLlLDEPt~~LD~~~---~~~l~~~L~~~---~~tvii 396 (718)
T PLN03073 330 GLSFTPEMQVKATKTFSGGWRMRIA-------LARALFIEPDLLLLDEPTNHLDLHA---VLWLETYLLKW---PKTFIV 396 (718)
T ss_pred HCCCChHHHhCchhhCCHHHHHHHH-------HHHHHhcCCCEEEEECCCCCCCHHH---HHHHHHHHHHc---CCEEEE
Confidence 77774 2 578899 9999999 99999999999999 777765 55555666554 567888
Q ss_pred EEecCCccCHHHHHHH-HhHhhhccceee-ecCc
Q 016165 356 VLNKADQVDTQQLMRV-YGALMWSLGKVL-NTPE 387 (394)
Q Consensus 356 v~nK~Dl~~~~~~~~~-~~~~~~~~G~i~-~~~~ 387 (394)
|. |+.+.+... ++++.+++|++. ..|.
T Consensus 397 vs-----Hd~~~l~~~~d~i~~l~~g~i~~~~g~ 425 (718)
T PLN03073 397 VS-----HAREFLNTVVTDILHLHGQKLVTYKGD 425 (718)
T ss_pred EE-----CCHHHHHHhCCEEEEEECCEEEEeCCC
Confidence 87 888888876 999999999986 4443
No 377
>PRK15494 era GTPase Era; Provisional
Probab=99.52 E-value=8.1e-14 Score=135.41 Aligned_cols=149 Identities=20% Similarity=0.318 Sum_probs=96.5
Q ss_pred hcCCceeeeeecCCcCcccccCCCCccc---------EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEe
Q 016165 171 KLKPLEVTYRFNDFVSPLLTNSDFDAKP---------MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMS 241 (394)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~---------~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~ 241 (394)
.++..+.++.|.. ...++..+.+.+++ .|+++|.+|||||||+|.|+|... .++++.+.+|+..+...
T Consensus 18 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~ 94 (339)
T PRK15494 18 DTEALAAAVREDA-STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGI 94 (339)
T ss_pred ccccccccccCCC-CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEE
Confidence 3444555556653 24456666665442 899999999999999999999886 67788888887543100
Q ss_pred cCcccccCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcC
Q 016165 242 GVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKC 321 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~ 321 (394)
+...+ ..+.++||||+.... ..+.+. +...+...+.++
T Consensus 95 -----------------~~~~~----------------------~qi~~~DTpG~~~~~-~~l~~~--~~r~~~~~l~~a 132 (339)
T PRK15494 95 -----------------ITLKD----------------------TQVILYDTPGIFEPK-GSLEKA--MVRCAWSSLHSA 132 (339)
T ss_pred -----------------EEeCC----------------------eEEEEEECCCcCCCc-ccHHHH--HHHHHHHHhhhC
Confidence 00111 167899999985410 011100 111334457899
Q ss_pred CEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 322 DLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 322 dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
|++|+++|... ........++..++..+.++++|.||+|+.+.
T Consensus 133 Dvil~VvD~~~-s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 133 DLVLLIIDSLK-SFDDITHNILDKLRSLNIVPIFLLNKIDIESK 175 (339)
T ss_pred CEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc
Confidence 99999999865 33333345666666667788899999998653
No 378
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.52 E-value=8e-14 Score=114.26 Aligned_cols=116 Identities=29% Similarity=0.443 Sum_probs=79.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|++|||||||+|.|++... ..++..+.+++...... +.+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~--~~~~~~~~~T~~~~~~~-----------------~~~~~--------------- 46 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL--AKVSNIPGTTRDPVYGQ-----------------FEYNN--------------- 46 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS--SEESSSTTSSSSEEEEE-----------------EEETT---------------
T ss_pred CEEEECCCCCCHHHHHHHHhcccc--ccccccccceeeeeeee-----------------eeece---------------
Confidence 589999999999999999999754 67888888877552100 00011
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
..+.++||||+.++..+..... .+. .+...+..+|++++++|... .......++++.++ .+.++++|+|
T Consensus 47 -------~~~~~vDtpG~~~~~~~~~~~~-~~~-~~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~-~~~~~i~v~N 115 (116)
T PF01926_consen 47 -------KKFILVDTPGINDGESQDNDGK-EIR-KFLEQISKSDLIIYVVDASN-PITEDDKNILRELK-NKKPIILVLN 115 (116)
T ss_dssp -------EEEEEEESSSCSSSSHHHHHHH-HHH-HHHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred -------eeEEEEeCCCCcccchhhHHHH-HHH-HHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh-cCCCEEEEEc
Confidence 2567999999987422221100 011 22333499999999999765 33455677888886 7899999999
Q ss_pred c
Q 016165 359 K 359 (394)
Q Consensus 359 K 359 (394)
|
T Consensus 116 K 116 (116)
T PF01926_consen 116 K 116 (116)
T ss_dssp S
T ss_pred C
Confidence 7
No 379
>PTZ00243 ABC transporter; Provisional
Probab=99.51 E-value=1.3e-14 Score=164.99 Aligned_cols=172 Identities=17% Similarity=0.163 Sum_probs=109.0
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSG 263 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g 263 (394)
+.+++++++++++ .++|+|+||||||||+++|+|... |..+...+ . ....++.|....+.+
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--------~~~G~i~~--~-------~~i~yv~Q~~~l~~~ 735 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--------ISEGRVWA--E-------RSIAYVPQQAWIMNA 735 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--------CCCcEEEE--C-------CeEEEEeCCCccCCC
Confidence 5689999999887 999999999999999999999983 22232111 0 112333333333322
Q ss_pred ccccccccchhhhhhc---------CCccccccc--ee----ecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-
Q 016165 264 LTTFGTAFLSKFECSQ---------MPHSLLEHI--TL----VDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (394)
Q Consensus 264 ~~~~~~~~~~~~~~~~---------~~~~~l~~~--~l----~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl- 326 (394)
+..+++.+....+.+ ...+.++.+ ++ .+....+| ||+||+. +||+++.+|+++|+
T Consensus 736 -Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRva-------LARAl~~~p~illLD 807 (1560)
T PTZ00243 736 -TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVS-------LARAVYANRDVYLLD 807 (1560)
T ss_pred -cHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHH-------HHHHHhcCCCEEEEc
Confidence 333333111100000 011112222 22 23566788 9999999 99999999999999
Q ss_pred ----EeCCCCCCchHHHHH-HHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCcccee
Q 016165 327 ----LFDPHKLDISDEFKR-VITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 327 ----~lD~~~~~~~~~~~~-~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~v 391 (394)
.+|+.. ...+++ ++.... .++++|+++ |+.+.+...|+++.+++|+++..|...++
T Consensus 808 EP~saLD~~~---~~~i~~~~~~~~~-~~~TvIlvT-----H~~~~~~~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 808 DPLSALDAHV---GERVVEECFLGAL-AGKTRVLAT-----HQVHVVPRADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred CccccCCHHH---HHHHHHHHHHHhh-CCCEEEEEe-----CCHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 777654 444443 232222 477888888 77777765699999999999887765543
No 380
>PRK00089 era GTPase Era; Reviewed
Probab=99.50 E-value=2.6e-13 Score=129.51 Aligned_cols=126 Identities=26% Similarity=0.432 Sum_probs=88.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|++|||||||+|.|+|... ++++..|.|++..+.. ....++
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~~-----------------------i~~~~~--------- 52 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIRG-----------------------IVTEDD--------- 52 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEEE-----------------------EEEcCC---------
Confidence 799999999999999999999886 7888888888765421 000000
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
..+.++||||+.+... ...+. +...+...+.++|++++++|+.. ........+++.+...+.|+++|+|
T Consensus 53 -------~qi~~iDTPG~~~~~~-~l~~~--~~~~~~~~~~~~D~il~vvd~~~-~~~~~~~~i~~~l~~~~~pvilVlN 121 (292)
T PRK00089 53 -------AQIIFVDTPGIHKPKR-ALNRA--MNKAAWSSLKDVDLVLFVVDADE-KIGPGDEFILEKLKKVKTPVILVLN 121 (292)
T ss_pred -------ceEEEEECCCCCCchh-HHHHH--HHHHHHHHHhcCCEEEEEEeCCC-CCChhHHHHHHHHhhcCCCEEEEEE
Confidence 1678999999976221 11110 11245667889999999999976 3345556666766666789999999
Q ss_pred cCCcc-CHHHHH
Q 016165 359 KADQV-DTQQLM 369 (394)
Q Consensus 359 K~Dl~-~~~~~~ 369 (394)
|+|+. +.+...
T Consensus 122 KiDl~~~~~~l~ 133 (292)
T PRK00089 122 KIDLVKDKEELL 133 (292)
T ss_pred CCcCCCCHHHHH
Confidence 99997 444443
No 381
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=1.7e-14 Score=157.69 Aligned_cols=171 Identities=19% Similarity=0.239 Sum_probs=117.6
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcc
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGL 264 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 264 (394)
..|+|++|+++. .+||+|+.|||||||+.+|+|+-. .+++ . +.+. ....|+.|....++|
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG-----~--v~v~-------gsiaYv~Q~pWI~ng- 596 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSG-----S--VAVN-------GSVAYVPQQPWIQNG- 596 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccc-----e--EEEc-------CeEEEeccccHhhCC-
Confidence 379999988877 999999999999999999999983 3332 2 1111 114456666666655
Q ss_pred cccccccchhhhhhcCCccccccceee-c--------------CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE--
Q 016165 265 TTFGTAFLSKFECSQMPHSLLEHITLV-D--------------TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-- 326 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-D--------------t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-- 326 (394)
+..+|+.+....++++.++.++.+.+. | .---+| ||||||. +|||.++++|+.|+
T Consensus 597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIs-------LARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRIS-------LARAVYQDADIYLLDD 669 (1381)
T ss_pred cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHH-------HHHHHhccCCEEEEcC
Confidence 455555444444444444444444432 2 122246 8999999 99999999999999
Q ss_pred ---EeCCCCCCchHHHH-HHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCcccee
Q 016165 327 ---LFDPHKLDISDEFK-RVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 327 ---~lD~~~~~~~~~~~-~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~v 391 (394)
.+|+.. ...++ +.+..+ -+++++|+|+ |..+.+...|.+++|++|++...|...++
T Consensus 670 plSAVDahv---g~~if~~ci~~~-L~~KT~ILVT-----Hql~~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 670 PLSAVDAHV---GKHIFEECIRGL-LRGKTVILVT-----HQLQFLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred cchhhhHhh---hHHHHHHHHHhh-hcCCEEEEEe-----CchhhhhhCCEEEEecCCeEecccCHHHH
Confidence 788765 44443 444222 2468999999 55556666799999999999988876654
No 382
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=4.7e-14 Score=119.65 Aligned_cols=169 Identities=20% Similarity=0.274 Sum_probs=112.3
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---C-------Cce-
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---P-------GNT- 252 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---~-------~~~- 252 (394)
-.++++++|++.. ++++=||+|+|||||+++|.+.+. |..+...+...+.-.... | ..+
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--------~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~Ti 95 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--------PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTI 95 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--------CCCceEEEEeCcchhhhhccChHHHHHHHHhhh
Confidence 4589999998876 999999999999999999999994 444443332222111100 0 000
Q ss_pred -eeeccCCCCCcccccccc-------cchhhhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHh
Q 016165 253 -VAVQADMPFSGLTTFGTA-------FLSKFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (394)
Q Consensus 253 -~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~ 318 (394)
++.|---.++.+....-. -++...+..++.++|.++++.+ .|+..| ||+|||. |||.++
T Consensus 96 GyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN-------IaRgfi 168 (235)
T COG4778 96 GYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN-------IARGFI 168 (235)
T ss_pred HHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh-------hhhhhh
Confidence 010100001111000000 0223356677778888887754 788889 8999999 999999
Q ss_pred hcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhh
Q 016165 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMW 377 (394)
Q Consensus 319 ~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~ 377 (394)
.+-.++|+ .+|+++ ..-+.++|.+-+.+|..++-+. ||.+.-+.. |+.+.+
T Consensus 169 vd~pILLLDEPTasLDa~N---r~vVveli~e~Ka~GaAlvGIF-----HDeevre~vadR~~~~ 225 (235)
T COG4778 169 VDYPILLLDEPTASLDATN---RAVVVELIREAKARGAALVGIF-----HDEEVREAVADRLLDV 225 (235)
T ss_pred ccCceEEecCCcccccccc---hHHHHHHHHHHHhcCceEEEee-----ccHHHHHHHhhheeec
Confidence 99999999 899988 7888999999888999999999 665443333 664443
No 383
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.47 E-value=1.1e-13 Score=115.22 Aligned_cols=164 Identities=21% Similarity=0.285 Sum_probs=117.2
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP---- 249 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~---- 249 (394)
+++.+.++ +..+-++|+++.+ ++.++||+|||||||+.-+.|...+... .+++ +..++++....|
T Consensus 7 nvsl~l~g--~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~-----~~G~--~~l~~~~l~~lPa~qR 77 (213)
T COG4136 7 NVSLRLPG--SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS-----CTGE--LWLNEQRLDMLPAAQR 77 (213)
T ss_pred eeeecCCC--ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcc-----eeeE--EEECCeeccccchhhh
Confidence 34445566 6788889998887 9999999999999999999998742111 1222 344555554444
Q ss_pred CceeeeccCCCCCcccccccccc--hh----hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHh
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFL--SK----FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~--~~----~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~ 318 (394)
...+.+|+...|+.+...+|..+ +. ...+..++..|++.++.. -|..+| |++.||+ +.|+++
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARva-------L~R~Ll 150 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVA-------LLRALL 150 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHH-------HHHHHH
Confidence 34557788888888877777632 11 134455677888887754 677888 8999999 999999
Q ss_pred hcCCEEEE-----EeCCCCCCchHHHHHH-HHHHhcCCCeEEEEEe
Q 016165 319 AKCDLILL-----LFDPHKLDISDEFKRV-ITSLRGHDDKIRVVLN 358 (394)
Q Consensus 319 ~~~dllLl-----~lD~~~~~~~~~~~~~-l~~l~~~~~~viiv~n 358 (394)
.+|+.+|+ .+|.. ...++.++ ..+++..+.|++.|+|
T Consensus 151 a~Pk~lLLDEPFS~LD~A---LR~qfR~wVFs~~r~agiPtv~VTH 193 (213)
T COG4136 151 AQPKALLLDEPFSRLDVA---LRDQFRQWVFSEVRAAGIPTVQVTH 193 (213)
T ss_pred hCcceeeeCCchhHHHHH---HHHHHHHHHHHHHHhcCCCeEEEec
Confidence 99999998 44443 25556554 4566777999999994
No 384
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.46 E-value=4.9e-14 Score=152.64 Aligned_cols=191 Identities=19% Similarity=0.211 Sum_probs=142.2
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|+.... +++++++.+++ +.+++|+|||||||++|+++|.. .|++|...+ .+.+..
T Consensus 568 ~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--------~~t~G~a~i--~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 568 NNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--------KPTSGEALI--KGHDITVSTDFQ 636 (885)
T ss_pred cceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--------cCCcceEEE--ecCccccccchh
Confidence 355567776323 89999999888 99999999999999999999999 344444333 222211
Q ss_pred -ccCCceeeeccCCCCCcccccccc-cch------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 247 -SIPGNTVAVQADMPFSGLTTFGTA-FLS------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 247 -~~~~~~~~~~~~~~~~g~~~~~~~-~~~------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
......+.+|.+..+..++..+.. ++. .....+.+..+++.+++.+ .++.+| |++.|+. +
T Consensus 637 ~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs-------~ 709 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLS-------F 709 (885)
T ss_pred hhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHH-------H
Confidence 122355666777667666665554 222 2234445677788888865 678888 8999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
|.+++.+|+++++ ++|+.. ++.+.+++..++++++ -++.++ |.+++++.. +|..+|.+|++...|.
T Consensus 710 aialig~p~vi~LDEPstGmDP~a---rr~lW~ii~~~~k~g~-aiiLTS----HsMeE~EaLCtR~aImv~G~l~ciGs 781 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKA---RRHLWDIIARLRKNGK-AIILTS----HSMEEAEALCTRTAIMVIGQLRCIGS 781 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHH---HHHHHHHHHHHHhcCC-EEEEEc----CCHHHHHHHhhhhheeecCeeEEecC
Confidence 9999999999999 889876 8889999999998877 444443 999998887 9999999999998776
Q ss_pred ccee
Q 016165 388 VVRV 391 (394)
Q Consensus 388 ~~~v 391 (394)
+.++
T Consensus 782 ~q~L 785 (885)
T KOG0059|consen 782 PQEL 785 (885)
T ss_pred hHHH
Confidence 6543
No 385
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=7.6e-13 Score=130.45 Aligned_cols=126 Identities=21% Similarity=0.315 Sum_probs=85.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
-|+|+|.||||||||+|+|++.. ..++..|.||+..+... ......
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k---~~vs~~p~TT~~p~~Gi-----------------------v~~~~~-------- 206 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK---PKVADYPFTTLVPNLGV-----------------------VRVDDE-------- 206 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc---ccccCCCCCccCcEEEE-----------------------EEeCCC--------
Confidence 79999999999999999999977 78899999998654311 000000
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCC---CCchHHHHHHHHHHhc-----CC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK---LDISDEFKRVITSLRG-----HD 350 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~---~~~~~~~~~~l~~l~~-----~~ 350 (394)
..+.++||||+..+..+....... +. ..+.++|++++++|+.. .........+++++.. .+
T Consensus 207 -------~~i~~vDtPGi~~~a~~~~~Lg~~---~l-~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~ 275 (390)
T PRK12298 207 -------RSFVVADIPGLIEGASEGAGLGIR---FL-KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAE 275 (390)
T ss_pred -------cEEEEEeCCCccccccchhhHHHH---HH-HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcC
Confidence 157899999998643221110111 12 34789999999999872 2233444555565554 25
Q ss_pred CeEEEEEecCCccCHHHHH
Q 016165 351 DKIRVVLNKADQVDTQQLM 369 (394)
Q Consensus 351 ~~viiv~nK~Dl~~~~~~~ 369 (394)
+|+++|+||+|+.+.+++.
T Consensus 276 kP~IlVlNKiDl~~~~el~ 294 (390)
T PRK12298 276 KPRWLVFNKIDLLDEEEAE 294 (390)
T ss_pred CCEEEEEeCCccCChHHHH
Confidence 7999999999997655543
No 386
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.3e-14 Score=134.71 Aligned_cols=192 Identities=17% Similarity=0.311 Sum_probs=127.5
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
+...++++.|... +.++.+++|.+++ +++++|++|+||||+++.|.+.+ ++..|+ +..++++....
T Consensus 263 v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy--------D~~sG~--I~id~qdir~vt 331 (497)
T COG5265 263 VAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY--------DVNSGS--ITIDGQDIRDVT 331 (497)
T ss_pred EEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh--------CCcCce--EEEcchhHHHhH
Confidence 4456778888753 6799999999988 99999999999999999999999 455555 45566654322
Q ss_pred -----CCceeeeccCCCCCcccccccc-c----chhhhhhcCCcc--ccccce-eec----CCCC----Cc-hhhhhhhc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTA-F----LSKFECSQMPHS--LLEHIT-LVD----TPGV----LS-GEKQRTQR 306 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~-~----~~~~~~~~~~~~--~l~~~~-l~D----t~g~----ls-Ge~qrv~~ 306 (394)
.-.+.++|+...|+.. .+.+. + ....+....++. +-..+. +.| ..|. +| ||+|||+
T Consensus 332 q~slR~aIg~VPQDtvLFNDt-i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrva- 409 (497)
T COG5265 332 QQSLRRAIGIVPQDTVLFNDT-IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA- 409 (497)
T ss_pred HHHHHHHhCcCcccceehhhh-HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHH-
Confidence 2334455665555432 22222 1 111111111111 111111 111 2233 35 8999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||.+.++|.++++ .+|... .+++...|+.+. .+.+.+++. |...-+...|.++++++|+
T Consensus 410 ------iar~ilk~p~il~~deatsaldt~t---e~~iq~~l~~~~-~~rttlvia-----hrlsti~~adeiivl~~g~ 474 (497)
T COG5265 410 ------IARTILKNPPILILDEATSALDTHT---EQAIQAALREVS-AGRTTLVIA-----HRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred ------HHHHHhcCCCEEEEehhhhHhhhhH---HHHHHHHHHHHh-CCCeEEEEe-----ehhhhccCCceEEEeeCCE
Confidence 99999999999999 777765 566666676665 467778888 6666666678999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
|++.|.-.++
T Consensus 475 i~erg~h~~l 484 (497)
T COG5265 475 IVERGTHEEL 484 (497)
T ss_pred EEecCcHHHH
Confidence 9998876544
No 387
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.43 E-value=7.6e-13 Score=128.94 Aligned_cols=124 Identities=23% Similarity=0.296 Sum_probs=82.8
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCC-Ccccccccccchhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPF-SGLTTFGTAFLSKFE 276 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 276 (394)
+.|+|+|.+|||||||+|+|++.. ..+++.|.+|++.... .+.+ .+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~---~~v~~~~~tT~d~~~~-----------------~i~~~~~~------------ 237 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD---VYAADQLFATLDPTTR-----------------RLDLPDGG------------ 237 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc---eeeccCCccccCCEEE-----------------EEEeCCCc------------
Confidence 589999999999999999999987 6667777776644310 0011 121
Q ss_pred hhcCCccccccceeecCCCCCch-hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHH---HHHHHHHhcCCCe
Q 016165 277 CSQMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF---KRVITSLRGHDDK 352 (394)
Q Consensus 277 ~~~~~~~~l~~~~l~Dt~g~lsG-e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~---~~~l~~l~~~~~~ 352 (394)
.+.++||||+... -...++. |. -+...+.++|++|+++|++........ .++++.+...++|
T Consensus 238 ----------~i~l~DT~G~~~~l~~~lie~---f~-~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p 303 (351)
T TIGR03156 238 ----------EVLLTDTVGFIRDLPHELVAA---FR-ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP 303 (351)
T ss_pred ----------eEEEEecCcccccCCHHHHHH---HH-HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC
Confidence 6789999998441 1111111 11 234568999999999999863323332 3455555545789
Q ss_pred EEEEEecCCccCHHH
Q 016165 353 IRVVLNKADQVDTQQ 367 (394)
Q Consensus 353 viiv~nK~Dl~~~~~ 367 (394)
+++|.||+|+.+...
T Consensus 304 iIlV~NK~Dl~~~~~ 318 (351)
T TIGR03156 304 QLLVYNKIDLLDEPR 318 (351)
T ss_pred EEEEEEeecCCChHh
Confidence 999999999976544
No 388
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.43 E-value=3.9e-14 Score=132.06 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=73.7
Q ss_pred CCccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhc---CCEEEE-----EeCCCCCCchHHHHHHHHH
Q 016165 280 MPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK---CDLILL-----LFDPHKLDISDEFKRVITS 345 (394)
Q Consensus 280 ~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~---~dllLl-----~lD~~~~~~~~~~~~~l~~ 345 (394)
.+.++++.+++.+ .+..+| ||+||+. +|++++.+ |+++|+ ++|+.. ...+.++++.
T Consensus 148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~-------LAraL~~~~~~p~lllLDEPtsgLD~~~---~~~l~~~L~~ 217 (261)
T cd03271 148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIK-------LAKELSKRSTGKTLYILDEPTTGLHFHD---VKKLLEVLQR 217 (261)
T ss_pred HHHHHHHHcCCchhhhcCccccCCHHHHHHHH-------HHHHHhcCCCCCcEEEEECCCCCCCHHH---HHHHHHHHHH
Confidence 3445666776643 467788 9999999 99999986 789988 777765 7778888888
Q ss_pred HhcCCCeEEEEEecCCccCHHHHHHHHhHhhh------ccceeeecCc
Q 016165 346 LRGHDDKIRVVLNKADQVDTQQLMRVYGALMW------SLGKVLNTPE 387 (394)
Q Consensus 346 l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~------~~G~i~~~~~ 387 (394)
+.+.+.++|++. |+.+.+...|+++.+ +.|+++..|.
T Consensus 218 l~~~g~tvIiit-----H~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 218 LVDKGNTVVVIE-----HNLDVIKCADWIIDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred HHhCCCEEEEEe-----CCHHHHHhCCEEEEecCCcCCCCCEEEEeCC
Confidence 887788888888 777777655999999 7899988765
No 389
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.43 E-value=8.1e-13 Score=115.15 Aligned_cols=123 Identities=23% Similarity=0.313 Sum_probs=76.9
Q ss_pred EEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhhc
Q 016165 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQ 279 (394)
Q Consensus 200 vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 279 (394)
|+++|++|||||||+|+|.+.. ..++..|.+++.... .. +.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~---~~v~~~~~~t~~~~~------------~~-----~~~~~~--------------- 47 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAK---PKIADYPFTTLVPNL------------GV-----VRVDDG--------------- 47 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCC---ccccCCCccccCCcc------------eE-----EEcCCC---------------
Confidence 8999999999999999999876 455555555432110 00 000010
Q ss_pred CCccccccceeecCCCCCchhhh--hhhcccChHHHHHHHhhcCCEEEEEeCCCCC-CchHHHHHHHHHHhc-----CCC
Q 016165 280 MPHSLLEHITLVDTPGVLSGEKQ--RTQRAYDFTGVTSWFAAKCDLILLLFDPHKL-DISDEFKRVITSLRG-----HDD 351 (394)
Q Consensus 280 ~~~~~l~~~~l~Dt~g~lsGe~q--rv~~~~~~~~iaral~~~~dllLl~lD~~~~-~~~~~~~~~l~~l~~-----~~~ 351 (394)
..+.++||||+..+... .+.+ ....-+.++|++++++|++.. ........+++.+.. .++
T Consensus 48 ------~~~~l~DtpG~~~~~~~~~~~~~------~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 115 (170)
T cd01898 48 ------RSFVVADIPGLIEGASEGKGLGH------RFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEK 115 (170)
T ss_pred ------CeEEEEecCcccCcccccCCchH------HHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcccccc
Confidence 16789999998652111 1110 112234679999999999873 233444555555543 257
Q ss_pred eEEEEEecCCccCHHHHH
Q 016165 352 KIRVVLNKADQVDTQQLM 369 (394)
Q Consensus 352 ~viiv~nK~Dl~~~~~~~ 369 (394)
|+++|.||+|+.+.....
T Consensus 116 p~ivv~NK~Dl~~~~~~~ 133 (170)
T cd01898 116 PRIVVLNKIDLLDEEELF 133 (170)
T ss_pred ccEEEEEchhcCCchhhH
Confidence 899999999986654443
No 390
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.41 E-value=1.7e-12 Score=125.56 Aligned_cols=124 Identities=23% Similarity=0.300 Sum_probs=83.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
-|+|+|.||||||||||+|++.. ..++..|.||....... +.+. ..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~---~~va~ypfTT~~p~~G~-----------------v~~~-----~~--------- 205 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAK---PKIADYPFTTLHPNLGV-----------------VRVD-----DY--------- 205 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCC---CccCCCCCceeCceEEE-----------------EEeC-----CC---------
Confidence 79999999999999999999976 56788888877543210 0000 00
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc-----CCCeE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-----HDDKI 353 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~-----~~~~v 353 (394)
..+.++|+||+..|..+...... .....+.+++++|+++|++.....+....+..++.. .++|+
T Consensus 206 -------~~~~i~D~PGli~ga~~~~gLg~----~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~ 274 (335)
T PRK12299 206 -------KSFVIADIPGLIEGASEGAGLGH----RFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPR 274 (335)
T ss_pred -------cEEEEEeCCCccCCCCccccHHH----HHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCe
Confidence 26789999999864332222000 112245789999999999863334455556565543 25799
Q ss_pred EEEEecCCccCHHH
Q 016165 354 RVVLNKADQVDTQQ 367 (394)
Q Consensus 354 iiv~nK~Dl~~~~~ 367 (394)
++|.||+|+.+...
T Consensus 275 IIV~NKiDL~~~~~ 288 (335)
T PRK12299 275 ILVLNKIDLLDEEE 288 (335)
T ss_pred EEEEECcccCCchh
Confidence 99999999875543
No 391
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=2.1e-12 Score=130.08 Aligned_cols=127 Identities=21% Similarity=0.304 Sum_probs=90.1
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|.+|+|||||+|+|+|... ..++..|+++++.+... +...+
T Consensus 174 ~~v~ivG~~n~GKStlin~ll~~~~--~~~~~~~gtt~~~~~~~-----------------~~~~~-------------- 220 (435)
T PRK00093 174 IKIAIIGRPNVGKSSLINALLGEER--VIVSDIAGTTRDSIDTP-----------------FERDG-------------- 220 (435)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCceEEEEEEE-----------------EEECC--------------
Confidence 4899999999999999999999886 77788888887654211 00111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHH--HHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVT--SWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~ia--ral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vii 355 (394)
..+.++||||+... ..+....++.... ...+..+|++|+++|+.. +...+...++..+.+.++++++
T Consensus 221 --------~~~~lvDT~G~~~~--~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~~~~~iv 289 (435)
T PRK00093 221 --------QKYTLIDTAGIRRK--GKVTEGVEKYSVIRTLKAIERADVVLLVIDATE-GITEQDLRIAGLALEAGRALVI 289 (435)
T ss_pred --------eeEEEEECCCCCCC--cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCcEEE
Confidence 16789999998751 1111111111122 335789999999999986 4566667777777777899999
Q ss_pred EEecCCccCHHHH
Q 016165 356 VLNKADQVDTQQL 368 (394)
Q Consensus 356 v~nK~Dl~~~~~~ 368 (394)
++||+|+.+.+..
T Consensus 290 v~NK~Dl~~~~~~ 302 (435)
T PRK00093 290 VVNKWDLVDEKTM 302 (435)
T ss_pred EEECccCCCHHHH
Confidence 9999999765443
No 392
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.39 E-value=3.4e-13 Score=136.99 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=108.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcc-cceeEEEEecCcccccCCce
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT-TDRFVVVMSGVDDRSIPGNT 252 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~-t~r~~i~~~~~~~~~~~~~~ 252 (394)
++++.|++. +.++++++|.+.+ +|||+||||+||||||+.|+|... +.++... .....+.+..|......
T Consensus 326 ~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~v~igyf~Q~~~~l~--- 398 (530)
T COG0488 326 NVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGETVKIGYFDQHRDELD--- 398 (530)
T ss_pred ccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCceEEEEEEehhhhcC---
Confidence 455667553 4689999999877 999999999999999999999884 2222211 11233444444332211
Q ss_pred eeeccCCCCCcccccccccchh-hhhhcCCccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEE
Q 016165 253 VAVQADMPFSGLTTFGTAFLSK-FECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllL 325 (394)
...+......-.. ......+..+|..|.|.. .++.+| ||+.|+. +|+.++.+|+++|
T Consensus 399 ---------~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~-------La~ll~~~pNvLi 462 (530)
T COG0488 399 ---------PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLL-------LAKLLLQPPNLLL 462 (530)
T ss_pred ---------ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHH-------HHHHhccCCCEEE
Confidence 0111111110000 001344555666777753 678899 8999999 9999999999999
Q ss_pred E-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc
Q 016165 326 L-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL 379 (394)
Q Consensus 326 l-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~ 379 (394)
| .+|... ...+.+.| ....-+||+|. ||...+..+ .++|.+..
T Consensus 463 LDEPTNhLDi~s---~~aLe~aL---~~f~Gtvl~VS-----HDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 463 LDEPTNHLDIES---LEALEEAL---LDFEGTVLLVS-----HDRYFLDRVATRIWLVED 511 (530)
T ss_pred EcCCCccCCHHH---HHHHHHHH---HhCCCeEEEEe-----CCHHHHHhhcceEEEEcC
Confidence 8 566543 33333333 33456788888 898888887 77777776
No 393
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=2.2e-12 Score=131.04 Aligned_cols=119 Identities=23% Similarity=0.315 Sum_probs=86.4
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
++|+|+|.+|||||||+|.|++... +.+...|+++++.+... ..+.+
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~--~~v~~~~gvT~d~~~~~-----------------~~~~~-------------- 85 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRRE--AVVEDVPGVTRDRVSYD-----------------AEWNG-------------- 85 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCc--ccccCCCCCCEeeEEEE-----------------EEECC--------------
Confidence 5899999999999999999999775 67777888877654211 00112
Q ss_pred hcCCccccccceeecCCCCCc---hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLS---GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls---Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vi 354 (394)
..+.++||||+.. +.... +...+...+.++|++|+++|+.. +.......+...+.+.++|++
T Consensus 86 --------~~~~l~DT~G~~~~~~~~~~~------~~~~~~~~~~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~~~pii 150 (472)
T PRK03003 86 --------RRFTVVDTGGWEPDAKGLQAS------VAEQAEVAMRTADAVLFVVDATV-GATATDEAVARVLRRSGKPVI 150 (472)
T ss_pred --------cEEEEEeCCCcCCcchhHHHH------HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEE
Confidence 1678999999853 11111 12255667899999999999986 334445566777777789999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+..
T Consensus 151 lV~NK~Dl~~ 160 (472)
T PRK03003 151 LAANKVDDER 160 (472)
T ss_pred EEEECccCCc
Confidence 9999999854
No 394
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.39 E-value=2.1e-12 Score=118.90 Aligned_cols=141 Identities=18% Similarity=0.306 Sum_probs=100.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.||++|+||+|||||.|-+.|... .+++..+.|||..+. |+...+.
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~il-----------------------gi~ts~e--------- 119 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRIL-----------------------GIITSGE--------- 119 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeee-----------------------EEEecCc---------
Confidence 799999999999999999999998 999999999987653 1111111
Q ss_pred cCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCC--CCchHHHHHHHHHHhcCCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK--LDISDEFKRVITSLRGHDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~--~~~~~~~~~~l~~l~~~~~~vii 355 (394)
-++.+.||||..+ ++..+-...+.+.+-++..+.++|+++.++|+.+ ..+...++..++... ..|-++
T Consensus 120 -------TQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys--~ips~l 190 (379)
T KOG1423|consen 120 -------TQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS--KIPSIL 190 (379)
T ss_pred -------eEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh--cCCcee
Confidence 1778999999999 5544444333444566788999999999999984 233455555665554 357799
Q ss_pred EEecCCccCHHHHHHHHhHhhhccceee
Q 016165 356 VLNKADQVDTQQLMRVYGALMWSLGKVL 383 (394)
Q Consensus 356 v~nK~Dl~~~~~~~~~~~~~~~~~G~i~ 383 (394)
|+||+|......+. ++....+.+|++.
T Consensus 191 vmnkid~~k~k~~L-l~l~~~Lt~g~l~ 217 (379)
T KOG1423|consen 191 VMNKIDKLKQKRLL-LNLKDLLTNGELA 217 (379)
T ss_pred eccchhcchhhhHH-hhhHHhccccccc
Confidence 99999976543321 1344566667653
No 395
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.39 E-value=1.5e-12 Score=130.91 Aligned_cols=122 Identities=20% Similarity=0.306 Sum_probs=86.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|.+|+|||||+|.|++... +.++..|+++++..... ..+.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~t~d~~~~~-----------------~~~~~--------------- 46 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD--AIVSDTPGVTRDRKYGD-----------------AEWGG--------------- 46 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc--ceecCCCCcccCceEEE-----------------EEECC---------------
Confidence 489999999999999999999875 77888888887543210 00112
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
..+.++||||+... ...+.. .+...+...+.++|++++++|+.. +.......+.+.+++.++|+++|.|
T Consensus 47 -------~~~~liDTpG~~~~-~~~~~~--~~~~~~~~~~~~ad~vl~vvD~~~-~~~~~d~~i~~~l~~~~~piilVvN 115 (429)
T TIGR03594 47 -------REFILIDTGGIEED-DDGLDK--QIREQAEIAIEEADVILFVVDGRE-GLTPEDEEIAKWLRKSGKPVILVAN 115 (429)
T ss_pred -------eEEEEEECCCCCCc-chhHHH--HHHHHHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHhCCCEEEEEE
Confidence 16789999998541 111110 012256667899999999999976 4455556667777777899999999
Q ss_pred cCCccCH
Q 016165 359 KADQVDT 365 (394)
Q Consensus 359 K~Dl~~~ 365 (394)
|+|+.+.
T Consensus 116 K~D~~~~ 122 (429)
T TIGR03594 116 KIDGKKE 122 (429)
T ss_pred CccCCcc
Confidence 9998543
No 396
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.39 E-value=2e-13 Score=116.34 Aligned_cols=179 Identities=18% Similarity=0.212 Sum_probs=106.2
Q ss_pred cccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCce------eeeccCCCCCccccccc
Q 016165 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNT------VAVQADMPFSGLTTFGT 269 (394)
Q Consensus 196 ~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~ 269 (394)
.+.++-++||||||||||+-.++|... ..+. |.+.|.+.....+.. |..+...+..-+..+..
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~~---------~sGs--i~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMTS---------GSGS--IQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCCC---------CCce--EEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 344899999999999999999999882 2222 444454433332221 11111111111111111
Q ss_pred c--cchhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchH
Q 016165 270 A--FLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISD 337 (394)
Q Consensus 270 ~--~~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~ 337 (394)
. ..+..+.....+++-..+++.| ...++| ||.|||.-+..+.++...+=..++++|+ .+|... +.
T Consensus 93 L~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ---~~ 169 (248)
T COG4138 93 LTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ---QS 169 (248)
T ss_pred hhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHH---HH
Confidence 1 1222333444455666778888 456788 8999998433222222211223344444 455443 44
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCccCHHHHH-HHHhHhhhccceeeecCccceeec
Q 016165 338 EFKRVITSLRGHDDKIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYI 393 (394)
Q Consensus 338 ~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~-~~~~~~~~~~G~i~~~~~~~~v~~ 393 (394)
....++..++..|..||+.. ||.+.-. ..+++|.++.|+++..|+..+|.+
T Consensus 170 aLdrll~~~c~~G~~vims~-----HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 170 ALDRLLSALCQQGLAIVMSS-----HDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred HHHHHHHHHHhCCcEEEEec-----cchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 55678888888888777766 5555444 459999999999999998888765
No 397
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.37 E-value=5.6e-12 Score=109.70 Aligned_cols=124 Identities=23% Similarity=0.400 Sum_probs=76.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|.+|+|||||+|.|++.. ..++..|.++..... ....+.+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~---~~~~~~~~~t~~~~~-----------------~~~~~~~--------------- 46 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK---PEVAPYPFTTKSLFV-----------------GHFDYKY--------------- 46 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC---CccCCCCCcccceeE-----------------EEEccCc---------------
Confidence 68999999999999999999977 334434443332210 0000111
Q ss_pred cCCccccccceeecCCCCCch---hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCc--hHHHHHHHHHHhcC--CC
Q 016165 279 QMPHSLLEHITLVDTPGVLSG---EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDI--SDEFKRVITSLRGH--DD 351 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsG---e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~--~~~~~~~l~~l~~~--~~ 351 (394)
..+.++||||+... ++..+. +. ...++...+|++|+++|+..... ......+++.++.. +.
T Consensus 47 -------~~~~i~Dt~G~~~~~~~~~~~~~----~~-~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (168)
T cd01897 47 -------LRWQVIDTPGLLDRPLEERNTIE----MQ-AITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNK 114 (168)
T ss_pred -------eEEEEEECCCcCCccccCCchHH----HH-HHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcC
Confidence 17789999998541 111111 10 11233445789999999975221 13334566666554 78
Q ss_pred eEEEEEecCCccCHHHHH
Q 016165 352 KIRVVLNKADQVDTQQLM 369 (394)
Q Consensus 352 ~viiv~nK~Dl~~~~~~~ 369 (394)
|+++|.||+|+.+...+.
T Consensus 115 pvilv~NK~Dl~~~~~~~ 132 (168)
T cd01897 115 PVIVVLNKIDLLTFEDLS 132 (168)
T ss_pred CeEEEEEccccCchhhHH
Confidence 999999999997665544
No 398
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=3.9e-12 Score=129.26 Aligned_cols=124 Identities=20% Similarity=0.275 Sum_probs=86.1
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|++|||||||+|.|++... ..++..|+++++.+... +.+.+
T Consensus 212 ~kI~iiG~~nvGKSSLin~l~~~~~--~~~s~~~gtT~d~~~~~-----------------~~~~~-------------- 258 (472)
T PRK03003 212 RRVALVGKPNVGKSSLLNKLAGEER--SVVDDVAGTTVDPVDSL-----------------IELGG-------------- 258 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCccCCcceEE-----------------EEECC--------------
Confidence 4899999999999999999999875 67788888887543100 00111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHH--HHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGV--TSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~i--aral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vii 355 (394)
..+.++||||++.. .+.....++... +...+.++|++++++|++. ....+...++..+.+.++|+++
T Consensus 259 --------~~~~l~DTaG~~~~--~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~~~~piIi 327 (472)
T PRK03003 259 --------KTWRFVDTAGLRRR--VKQASGHEYYASLRTHAAIEAAEVAVVLIDASE-PISEQDQRVLSMVIEAGRALVL 327 (472)
T ss_pred --------EEEEEEECCCcccc--ccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEE
Confidence 15679999998541 000000011111 2345789999999999986 3455556777777777899999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 328 V~NK~Dl~~~ 337 (472)
T PRK03003 328 AFNKWDLVDE 337 (472)
T ss_pred EEECcccCCh
Confidence 9999999653
No 399
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=4.9e-13 Score=143.64 Aligned_cols=185 Identities=20% Similarity=0.232 Sum_probs=128.2
Q ss_pred CcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcc--ccc-CCceeeeccC
Q 016165 184 FVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD--RSI-PGNTVAVQAD 258 (394)
Q Consensus 184 ~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~--~~~-~~~~~~~~~~ 258 (394)
..+++|++++=-+.| ..||+|++|||||||||.|+|+..-|. .+|. +.++|.+. ..+ ...+++.|.+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~------I~Gd--i~i~G~p~~q~tF~R~~GYvqQ~D 873 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGY------IEGD--ILISGFPKDQETFARVSGYVEQQD 873 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccce------EEeE--EEECCeeCchhhhccccceeeccc
Confidence 446788988855555 899999999999999999999873111 1222 33333322 222 3456677888
Q ss_pred CCCCcccccccccc----------hhhhhhcCCccccccceeec-------CCCC-Cc-hhhhhhhcccChHHHHHHHhh
Q 016165 259 MPFSGLTTFGTAFL----------SKFECSQMPHSLLEHITLVD-------TPGV-LS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 259 ~~~~g~~~~~~~~~----------~~~~~~~~~~~~l~~~~l~D-------t~g~-ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
++...++..+...+ ...+..+.++++++.+++.+ .||. +| .||+|+. |+-.|+.
T Consensus 874 iH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLT-------IgVELvA 946 (1391)
T KOG0065|consen 874 IHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLT-------IGVELVA 946 (1391)
T ss_pred ccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceee-------EEEEEec
Confidence 88888887766531 11234466677777766653 4441 44 5777887 7778999
Q ss_pred cCCEEEE------EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcc-ceeeecCccc
Q 016165 320 KCDLILL------LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSL-GKVLNTPEVV 389 (394)
Q Consensus 320 ~~dllLl------~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~-G~i~~~~~~~ 389 (394)
+|+.||+ +||+.. .-.++++++.+...|.+|++-+|. ......+..|+.++++. |+.+..|+.-
T Consensus 947 ~P~~ilFLDEPTSGLDsqa---A~~i~~~lrkla~tGqtIlCTIHQ---PS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 947 NPSSILFLDEPTSGLDSQA---AAIVMRFLRKLADTGQTILCTIHQ---PSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred CCceeEEecCCCCCccHHH---HHHHHHHHHHHHhcCCeEEEEecC---CcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 9987777 777765 667889999999999998888854 44455666799888875 7888776653
No 400
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.36 E-value=1.7e-12 Score=113.27 Aligned_cols=152 Identities=25% Similarity=0.378 Sum_probs=89.1
Q ss_pred EEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee-ee-ccCCCCCcccccccccchhh-h
Q 016165 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV-AV-QADMPFSGLTTFGTAFLSKF-E 276 (394)
Q Consensus 200 vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~-~~-~~~~~~~g~~~~~~~~~~~~-~ 276 (394)
|+++|+.+||||||+|+|+|... .+++..|.|.......++++......... .. .....+.............. .
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~i--lp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPI--LPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDS 78 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS---SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhccc--CcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccc
Confidence 78999999999999999999886 77777888888776656554332211111 00 00000001000000000000 0
Q ss_pred -------------hhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHH
Q 016165 277 -------------CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVI 343 (394)
Q Consensus 277 -------------~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l 343 (394)
...........+.|+||||..++...... ++..++.++|++|+++++.......+...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~-------~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~ 151 (168)
T PF00350_consen 79 IEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE-------ITEEYLPKADVVIFVVDANQDLTESDMEFLK 151 (168)
T ss_dssp HHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH-------HHHHHHSTTEEEEEEEETTSTGGGHHHHHHH
T ss_pred ccccccccccceeEEeeccccccceEEEeCCccccchhhhHH-------HHHHhhccCCEEEEEeccCcccchHHHHHHH
Confidence 01111234466789999999884443334 7788889999999999998733334444444
Q ss_pred HHHhcCCCeEEEEEecC
Q 016165 344 TSLRGHDDKIRVVLNKA 360 (394)
Q Consensus 344 ~~l~~~~~~viiv~nK~ 360 (394)
+........+++|.||+
T Consensus 152 ~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 152 QMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHTTTCSSEEEEEE-G
T ss_pred HHhcCCCCeEEEEEcCC
Confidence 45455566789999984
No 401
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.36 E-value=2.3e-12 Score=110.67 Aligned_cols=115 Identities=24% Similarity=0.288 Sum_probs=74.9
Q ss_pred EeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhhcCC
Q 016165 202 LLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMP 281 (394)
Q Consensus 202 IvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 281 (394)
|+|.+|+|||||+|.+++.. ..++..|+++..... ..+.+.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~---~~~~~~~~~t~~~~~-----------------~~~~~~~------------------ 42 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR---QKVGNWPGVTVEKKE-----------------GRFKLGG------------------ 42 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc---ccccCCCCcccccce-----------------EEEeeCC------------------
Confidence 58999999999999999976 445555555443210 0011111
Q ss_pred ccccccceeecCCCCCchhhhhhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEec
Q 016165 282 HSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (394)
Q Consensus 282 ~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK 359 (394)
..+.++||||+......... ..+.+.++ .++|++++++|+.. ......++..+.+.++|++++.||
T Consensus 43 ----~~~~liDtpG~~~~~~~~~~-----~~~~~~~~~~~~~d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~iiv~NK 110 (158)
T cd01879 43 ----KEIEIVDLPGTYSLSPYSED-----EKVARDFLLGEKPDLIVNVVDATN---LERNLYLTLQLLELGLPVVVALNM 110 (158)
T ss_pred ----eEEEEEECCCccccCCCChh-----HHHHHHHhcCCCCcEEEEEeeCCc---chhHHHHHHHHHHcCCCEEEEEeh
Confidence 16789999998651111011 01344455 49999999999986 344445566666668899999999
Q ss_pred CCccCHH
Q 016165 360 ADQVDTQ 366 (394)
Q Consensus 360 ~Dl~~~~ 366 (394)
+|+.+..
T Consensus 111 ~Dl~~~~ 117 (158)
T cd01879 111 IDEAEKR 117 (158)
T ss_pred hhhcccc
Confidence 9986543
No 402
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.36 E-value=1.4e-13 Score=116.13 Aligned_cols=115 Identities=29% Similarity=0.409 Sum_probs=70.7
Q ss_pred cccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------cCCceeeeccCCC
Q 016165 189 LTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------IPGNTVAVQADMP 260 (394)
Q Consensus 189 l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------~~~~~~~~~~~~~ 260 (394)
|+++++++.+ +++|+|+||||||||+++|+|.. .|..+. +.+.+.+... .....+..+....
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~--------~~~~G~--i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 70 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL--------PPDSGS--ILINGKDISDIDIEELRRRIGYVPQDPQL 70 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--------HESEEE--EEETTEEGTTSHHHHHHHTEEEEESSHCH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccc--------cccccc--ccccccccccccccccccccccccccccc
Confidence 4566777766 99999999999999999999998 343333 3333333222 1123333344333
Q ss_pred CCcccccccccchhhhhhcCCccccccceeec--------CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 261 FSGLTTFGTAFLSKFECSQMPHSLLEHITLVD--------TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 261 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~D--------t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
+.+.+...+ ...+.+.++++.+.+.+ .+..+| ||+||+. +|++++.+|+++|+
T Consensus 71 ~~~~tv~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~-------la~al~~~~~llll 132 (137)
T PF00005_consen 71 FPGLTVREN------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLA-------LARALLKNPKLLLL 132 (137)
T ss_dssp HTTSBHHHH------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHH-------HHHHHHTTSSEEEE
T ss_pred ccccccccc------cccccccccccccccccccccccccccchhhHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 333332222 11112333333333322 347788 9999999 99999999999986
No 403
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.36 E-value=4.7e-12 Score=108.31 Aligned_cols=119 Identities=25% Similarity=0.329 Sum_probs=78.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.+++... ..++..|++++...... +.+.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~-------------- 48 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR--AIVSDIAGTTRDVIEES-----------------IDIGG-------------- 48 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce--EeccCCCCCccceEEEE-----------------EEeCC--------------
Confidence 3689999999999999999999774 45555666554322100 00111
Q ss_pred hcCCccccccceeecCCCCCchh----hhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGE----KQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe----~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~v 353 (394)
..+.++||||..... +.+.. .....+.++|++++++|+.... ......++.. ..+.|+
T Consensus 49 --------~~~~i~DtpG~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~v~d~~~~~-~~~~~~~~~~--~~~~~v 110 (157)
T cd04164 49 --------IPVRLIDTAGIRETEDEIEKIGIE-------RAREAIEEADLVLFVIDASRGL-DEEDLEILEL--PADKPI 110 (157)
T ss_pred --------EEEEEEECCCcCCCcchHHHHHHH-------HHHHHHhhCCEEEEEEECCCCC-CHHHHHHHHh--hcCCCE
Confidence 167899999986621 11222 3345678999999999998522 3333444443 346899
Q ss_pred EEEEecCCccCHHH
Q 016165 354 RVVLNKADQVDTQQ 367 (394)
Q Consensus 354 iiv~nK~Dl~~~~~ 367 (394)
++|.||+|+.+...
T Consensus 111 i~v~nK~D~~~~~~ 124 (157)
T cd04164 111 IVVLNKSDLLPDSE 124 (157)
T ss_pred EEEEEchhcCCccc
Confidence 99999999876443
No 404
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.36 E-value=9.3e-12 Score=107.13 Aligned_cols=127 Identities=25% Similarity=0.394 Sum_probs=81.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||+|.++|... +.++..+.+++...... ....+
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~--------------- 50 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGI-----------------YTDDD--------------- 50 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCce--EeccCCCCceeceEEEE-----------------EEcCC---------------
Confidence 799999999999999999999874 33443444433221100 00001
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
..+.++||||.......+-.+ +...+...+..+|++++++|+... .......+++.+...+.|+++|+|
T Consensus 51 -------~~~~liDtpG~~~~~~~~~~~---~~~~~~~~~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~~~~~iiv~n 119 (168)
T cd04163 51 -------AQIIFVDTPGIHKPKKKLGER---MVKAAWSALKDVDLVLFVVDASEP-IGEGDEFILELLKKSKTPVILVLN 119 (168)
T ss_pred -------eEEEEEECCCCCcchHHHHHH---HHHHHHHHHHhCCEEEEEEECCCc-cCchHHHHHHHHHHhCCCEEEEEE
Confidence 156789999987632211110 122456678999999999999863 233444556666666789999999
Q ss_pred cCCcc-CHHHHHH
Q 016165 359 KADQV-DTQQLMR 370 (394)
Q Consensus 359 K~Dl~-~~~~~~~ 370 (394)
|+|+. ..+.+..
T Consensus 120 K~Dl~~~~~~~~~ 132 (168)
T cd04163 120 KIDLVKDKEDLLP 132 (168)
T ss_pred chhccccHHHHHH
Confidence 99987 3444433
No 405
>PRK11058 GTPase HflX; Provisional
Probab=99.35 E-value=3.7e-12 Score=127.04 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=80.0
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.|+|+|.+|||||||+|+|++.. ..+++.|++|.+.... .+.+.+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~---~~v~~~~~tTld~~~~-----------------~i~l~~~------------- 244 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEAR---VYAADQLFATLDPTLR-----------------RIDVADV------------- 244 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc---eeeccCCCCCcCCceE-----------------EEEeCCC-------------
Confidence 479999999999999999999987 4466666666543210 0001110
Q ss_pred hcCCccccccceeecCCCCCch-hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHH---HHHHHHHhcCCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF---KRVITSLRGHDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsG-e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~---~~~l~~l~~~~~~v 353 (394)
..+.++||||+.+. ....+. . |. -+...+.++|++|+++|+++....... .+++..+...+.|+
T Consensus 245 --------~~~~l~DTaG~~r~lp~~lve-~--f~-~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pv 312 (426)
T PRK11058 245 --------GETVLADTVGFIRHLPHDLVA-A--FK-ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPT 312 (426)
T ss_pred --------CeEEEEecCcccccCCHHHHH-H--HH-HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCE
Confidence 15579999998541 111111 1 11 234557899999999999873322332 35566665557899
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 313 IiV~NKiDL~~ 323 (426)
T PRK11058 313 LLVMNKIDMLD 323 (426)
T ss_pred EEEEEcccCCC
Confidence 99999999864
No 406
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.5e-12 Score=112.53 Aligned_cols=149 Identities=17% Similarity=0.318 Sum_probs=94.5
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCC--
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPF-- 261 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~-- 261 (394)
..++.+++|++.+ .+.|.||||+|||||+++|+|+. .|..++ +.+.+......+... .....+
T Consensus 15 ~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl--------~p~~G~--v~~~~~~i~~~~~~~---~~~l~yLG 81 (209)
T COG4133 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL--------RPDAGE--VYWQGEPIQNVRESY---HQALLYLG 81 (209)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc--------CCCCCe--EEecCCCCccchhhH---HHHHHHhh
Confidence 5688899998887 99999999999999999999999 455555 222322222211100 001111
Q ss_pred ------Ccccccccc-cchhhhh---hcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 262 ------SGLTTFGTA-FLSKFEC---SQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 262 ------~g~~~~~~~-~~~~~~~---~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
..++.++|. |+..+.. ...+.++++.+++.+ +++.+| ||++||+ +||-++..+++=|+
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvA-------lArL~ls~~pLWiL 154 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVA-------LARLWLSPAPLWIL 154 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHH-------HHHHHcCCCCceee
Confidence 123455555 4444322 345567777887654 679999 9999999 99999999999887
Q ss_pred -----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 327 -----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 327 -----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
.+|... ...+..++..-...|- +|+.++
T Consensus 155 DEP~taLDk~g---~a~l~~l~~~H~~~GG-iVlltt 187 (209)
T COG4133 155 DEPFTALDKEG---VALLTALMAAHAAQGG-IVLLTT 187 (209)
T ss_pred cCcccccCHHH---HHHHHHHHHHHhcCCC-EEEEec
Confidence 666554 3333444443333333 455554
No 407
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.34 E-value=8.2e-12 Score=125.55 Aligned_cols=125 Identities=25% Similarity=0.334 Sum_probs=79.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+|+|.||||||||+|.|++.. ..++..|.||+...... +.+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak---pkIadypfTTl~P~lGv-----------------v~~~~-------------- 205 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK---PKIADYPFTTLVPNLGV-----------------VQAGD-------------- 205 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC---ccccccCcccccceEEE-----------------EEECC--------------
Confidence 379999999999999999999976 66788888887543210 00111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCC----CchHHHHHHHHHHh------
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL----DISDEFKRVITSLR------ 347 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~----~~~~~~~~~l~~l~------ 347 (394)
..+.++|+||+..|..+......+| ...+.+++++|+++|++.. +....+..+.++|.
T Consensus 206 --------~~f~laDtPGliegas~g~gLg~~f----LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l 273 (500)
T PRK12296 206 --------TRFTVADVPGLIPGASEGKGLGLDF----LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPAL 273 (500)
T ss_pred --------eEEEEEECCCCccccchhhHHHHHH----HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcc
Confidence 1678999999986432221111111 2246889999999999641 11222222222221
Q ss_pred --------cCCCeEEEEEecCCccCHHHH
Q 016165 348 --------GHDDKIRVVLNKADQVDTQQL 368 (394)
Q Consensus 348 --------~~~~~viiv~nK~Dl~~~~~~ 368 (394)
..++|+|+|.||+|+.+....
T Consensus 274 ~~~~~~~~l~~kP~IVVlNKiDL~da~el 302 (500)
T PRK12296 274 DGDLGLGDLAERPRLVVLNKIDVPDAREL 302 (500)
T ss_pred cccchhhhhcCCCEEEEEECccchhhHHH
Confidence 135799999999999765443
No 408
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.34 E-value=9.1e-12 Score=120.35 Aligned_cols=126 Identities=22% Similarity=0.293 Sum_probs=81.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
-|+|+|.||||||||+|+|++.. ..++..|.||....... . .+.+ .
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~---~~va~y~fTT~~p~ig~------------v-----~~~~-----~--------- 204 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAK---PKIADYPFTTLVPNLGV------------V-----RVDD-----G--------- 204 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCC---ccccCCCCCccCCEEEE------------E-----EeCC-----c---------
Confidence 79999999999999999999876 56777777776432100 0 0001 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCC---CchHHHHHHHHHHhc-----CC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL---DISDEFKRVITSLRG-----HD 350 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~---~~~~~~~~~l~~l~~-----~~ 350 (394)
..+.++|+||+..+..+...... .....+.+++++|+++|+... ...+.+..+.+++.. ..
T Consensus 205 -------~~~~i~D~PGli~~a~~~~gLg~----~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~ 273 (329)
T TIGR02729 205 -------RSFVIADIPGLIEGASEGAGLGH----RFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAE 273 (329)
T ss_pred -------eEEEEEeCCCcccCCcccccHHH----HHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhcc
Confidence 16789999999764322211000 111235689999999999752 223444445454432 25
Q ss_pred CeEEEEEecCCccCHHHHH
Q 016165 351 DKIRVVLNKADQVDTQQLM 369 (394)
Q Consensus 351 ~~viiv~nK~Dl~~~~~~~ 369 (394)
+|+++|.||+|+.+.+...
T Consensus 274 kp~IIV~NK~DL~~~~~~~ 292 (329)
T TIGR02729 274 KPRIVVLNKIDLLDEEELA 292 (329)
T ss_pred CCEEEEEeCccCCChHHHH
Confidence 7999999999997665443
No 409
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.33 E-value=7.8e-12 Score=125.73 Aligned_cols=119 Identities=22% Similarity=0.320 Sum_probs=85.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.++++|.+|+|||||+|.|++... ..++..|+++++.+... +...+
T Consensus 174 ~v~ivG~~~~GKSsLin~l~~~~~--~~~~~~~gtt~~~~~~~-----------------~~~~~--------------- 219 (429)
T TIGR03594 174 KIAIIGRPNVGKSTLVNALLGEER--VIVSDIAGTTRDSIDIP-----------------FERNG--------------- 219 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCe--eecCCCCCceECcEeEE-----------------EEECC---------------
Confidence 799999999999999999999875 66777787777543210 00111
Q ss_pred cCCccccccceeecCCCCCch--hhhhhhcccChHHH--HHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSG--EKQRTQRAYDFTGV--TSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsG--e~qrv~~~~~~~~i--aral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vi 354 (394)
..+.++||||+... ....++ +... +...+..+|++|+++|+.. +...+...++..+.+.+.|++
T Consensus 220 -------~~~~liDT~G~~~~~~~~~~~e----~~~~~~~~~~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~~~~ii 287 (429)
T TIGR03594 220 -------KKYLLIDTAGIRRKGKVTEGVE----KYSVLRTLKAIERADVVLLVLDATE-GITEQDLRIAGLILEAGKALV 287 (429)
T ss_pred -------cEEEEEECCCccccccchhhHH----HHHHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEE
Confidence 15689999998651 111111 1112 2345799999999999986 455666677777777789999
Q ss_pred EEEecCCcc
Q 016165 355 VVLNKADQV 363 (394)
Q Consensus 355 iv~nK~Dl~ 363 (394)
+|.||+|+.
T Consensus 288 iv~NK~Dl~ 296 (429)
T TIGR03594 288 IVVNKWDLV 296 (429)
T ss_pred EEEECcccC
Confidence 999999997
No 410
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.32 E-value=5e-11 Score=105.34 Aligned_cols=122 Identities=19% Similarity=0.338 Sum_probs=77.8
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.|+|+|++|+|||||+|.|++.... ..++..+++++....+. .+
T Consensus 19 ~~i~ivG~~~~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~-------------------~~--------------- 63 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLINALTNRKKL-ARTSKTPGRTQLINFFE-------------------VN--------------- 63 (179)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCc-ccccCCCCcceEEEEEE-------------------eC---------------
Confidence 48999999999999999999987510 33444444444221100 00
Q ss_pred hcCCccccccceeecCCCCCch---hhhhhhcccChHHHHHHHhh---cCCEEEEEeCCCCCCchHHHHHHHHHHhcCCC
Q 016165 278 SQMPHSLLEHITLVDTPGVLSG---EKQRTQRAYDFTGVTSWFAA---KCDLILLLFDPHKLDISDEFKRVITSLRGHDD 351 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsG---e~qrv~~~~~~~~iaral~~---~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~ 351 (394)
..+.++||||.... +..+.. |..+...++. .++.+++++|+.. ........+++.+...+.
T Consensus 64 --------~~~~liDtpG~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~~~ 130 (179)
T TIGR03598 64 --------DGFRLVDLPGYGYAKVSKEEKEK----WQKLIEEYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRERGI 130 (179)
T ss_pred --------CcEEEEeCCCCccccCChhHHHH----HHHHHHHHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHcCC
Confidence 15689999997541 111111 2223334444 4579999999876 344455556666666788
Q ss_pred eEEEEEecCCccCHHH
Q 016165 352 KIRVVLNKADQVDTQQ 367 (394)
Q Consensus 352 ~viiv~nK~Dl~~~~~ 367 (394)
|+++++||+|+.+..+
T Consensus 131 pviiv~nK~D~~~~~~ 146 (179)
T TIGR03598 131 PVLIVLTKADKLKKSE 146 (179)
T ss_pred CEEEEEECcccCCHHH
Confidence 9999999999976543
No 411
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.32 E-value=4.2e-12 Score=120.80 Aligned_cols=179 Identities=19% Similarity=0.244 Sum_probs=108.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-----S 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~-----~ 247 (394)
-++.|.|... .-.+.-+|++++. .|-|+|.||||||||+..|+|.+ .|..++ |.++|+... +
T Consensus 326 rnvrfay~~~-~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~--------~PqsG~--I~ldg~pV~~e~led 394 (546)
T COG4615 326 RNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY--------QPQSGE--ILLDGKPVSAEQLED 394 (546)
T ss_pred eeeeeccCcc-cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc--------CCCCCc--eeECCccCCCCCHHH
Confidence 3445555431 1234445555544 89999999999999999999999 455565 333333221 1
Q ss_pred cCC-ceeeeccCCCCCcccccccccchhhhhhcCCccccccc------eeec---CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 248 IPG-NTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI------TLVD---TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 248 ~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~------~l~D---t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
+.+ .+-++.+...|+.+...++ +...+.+..+|+++ .+-| ++-.+| ||++|++ +.-+
T Consensus 395 YR~LfSavFsDyhLF~~ll~~e~-----~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlA-------ll~A 462 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQLLGPEG-----KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLA-------LLLA 462 (546)
T ss_pred HHHHHHHHhhhHhhhHhhhCCcc-----CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHH-------HHHH
Confidence 110 0001111122221111111 01111222333333 3444 566677 9999999 8889
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHH-HHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeee
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFK-RVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLN 384 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~-~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~ 384 (394)
++.+-|++++ --|+.. ++.+. .++-.+++.|++|+.|+ ||..-+...|+.+.+++|++++
T Consensus 463 llEeR~Ilv~DEWAADQDPaF---RR~FY~~lLp~LK~qGKTI~aIs-----HDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 463 LLEERDILVLDEWAADQDPAF---RREFYQVLLPLLKEQGKTIFAIS-----HDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred HHhhCCeEEeehhhccCChHH---HHHHHHHHhHHHHHhCCeEEEEe-----cCchhhhhHHHHHHHhcCceee
Confidence 9999999998 344432 44443 46677888899999998 8777777779999999999985
No 412
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=7.9e-12 Score=125.93 Aligned_cols=121 Identities=21% Similarity=0.349 Sum_probs=83.4
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
++|+|+|.+|+|||||+|.|+|... +.++..|+++++..... ..+.+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~--~~v~~~~~~t~d~~~~~-----------------~~~~~~------------- 49 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD--AIVADTPGVTRDRIYGE-----------------AEWLGR------------- 49 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCCCcccceEEE-----------------EEECCc-------------
Confidence 4699999999999999999999875 66777777776543100 011121
Q ss_pred hcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv 356 (394)
.+.++||||+.. .+ ..... +...+...+.++|++|+++|+.. +.......+.+.+++.+.|+++|
T Consensus 50 ---------~~~liDT~G~~~~~~--~~~~~--~~~~~~~~~~~ad~il~vvd~~~-~~~~~~~~~~~~l~~~~~piilv 115 (435)
T PRK00093 50 ---------EFILIDTGGIEPDDD--GFEKQ--IREQAELAIEEADVILFVVDGRA-GLTPADEEIAKILRKSNKPVILV 115 (435)
T ss_pred ---------EEEEEECCCCCCcch--hHHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCcEEEE
Confidence 678999999965 11 01100 11134556889999999999976 33444445556666668999999
Q ss_pred EecCCccC
Q 016165 357 LNKADQVD 364 (394)
Q Consensus 357 ~nK~Dl~~ 364 (394)
.||+|+.+
T Consensus 116 ~NK~D~~~ 123 (435)
T PRK00093 116 VNKVDGPD 123 (435)
T ss_pred EECccCcc
Confidence 99999754
No 413
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.32 E-value=2.2e-12 Score=115.85 Aligned_cols=161 Identities=14% Similarity=0.167 Sum_probs=90.6
Q ss_pred ccCCCCccc-EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---cCCceeeeccCCCCCccc
Q 016165 190 TNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---IPGNTVAVQADMPFSGLT 265 (394)
Q Consensus 190 ~~~~~~~~~-~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---~~~~~~~~~~~~~~~g~~ 265 (394)
+++++++.+ +++|+||||||||||+++|++...+....+.. ......+.+.+++... ...+.+++|....+.+.
T Consensus 14 ~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~- 91 (197)
T cd03278 14 DKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLR-GEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI- 91 (197)
T ss_pred CCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhc-ccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE-
Confidence 445555555 99999999999999999999886320000000 0000011122222111 11122333332222000
Q ss_pred ccccccchhhhhhcCCccccccceeec-CCCCCc-hhhhhhhcccChHHHHHHHh----hcCCEEEE-----EeCCCCCC
Q 016165 266 TFGTAFLSKFECSQMPHSLLEHITLVD-TPGVLS-GEKQRTQRAYDFTGVTSWFA----AKCDLILL-----LFDPHKLD 334 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~l~D-t~g~ls-Ge~qrv~~~~~~~~iaral~----~~~dllLl-----~lD~~~~~ 334 (394)
...+.+.++++.-...+ .+..+| ||+||+. +|++++ ..|+++|+ .+|+..
T Consensus 92 ----------~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~-------la~~l~~~~~~~~~illlDEP~~~LD~~~-- 152 (197)
T cd03278 92 ----------ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTA-------LALLFAIFRVRPSPFCVLDEVDAALDDAN-- 152 (197)
T ss_pred ----------EehhhHHHHHhCCCccccchhhcCHHHHHHHH-------HHHHHHHhccCCCCEEEEeCCcccCCHHH--
Confidence 01122333333322223 678889 9999999 999987 45689998 777765
Q ss_pred chHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhc
Q 016165 335 ISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWS 378 (394)
Q Consensus 335 ~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~ 378 (394)
...+.++++++.+ +.++|+++ |+.+.+...|+++.++
T Consensus 153 -~~~l~~~l~~~~~-~~tiIiit-----H~~~~~~~~d~v~~~~ 189 (197)
T cd03278 153 -VERFARLLKEFSK-ETQFIVIT-----HRKGTMEAADRLYGVT 189 (197)
T ss_pred -HHHHHHHHHHhcc-CCEEEEEE-----CCHHHHhhcceEEEEE
Confidence 7777888888765 57777777 7666554336655443
No 414
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.32 E-value=1.6e-11 Score=110.81 Aligned_cols=127 Identities=24% Similarity=0.321 Sum_probs=75.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.|+|+|++|||||||+|.+++.. ..+...+.++..... ..+.+.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~---~~~~~~~~~t~~~~~-----------------~~~~~~~~------------- 88 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGAD---VYAEDQLFATLDPTT-----------------RRLRLPDG------------- 88 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcch---hccCCccceecccee-----------------EEEEecCC-------------
Confidence 489999999999999999999976 333333333221110 00001110
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHH---HHHHHHHhcCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF---KRVITSLRGHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~---~~~l~~l~~~~~~vi 354 (394)
..+.++||||+.+...+..... |. -....+.++|++++++|+......... .++++.+...+.|++
T Consensus 89 --------~~~~i~Dt~G~~~~~~~~~~~~--~~-~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~vi 157 (204)
T cd01878 89 --------REVLLTDTVGFIRDLPHQLVEA--FR-STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMI 157 (204)
T ss_pred --------ceEEEeCCCccccCCCHHHHHH--HH-HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEE
Confidence 1667899999865211111100 11 112346789999999999763323222 344544444467999
Q ss_pred EEEecCCccCHHHH
Q 016165 355 VVLNKADQVDTQQL 368 (394)
Q Consensus 355 iv~nK~Dl~~~~~~ 368 (394)
+|.||+|+......
T Consensus 158 iV~NK~Dl~~~~~~ 171 (204)
T cd01878 158 LVLNKIDLLDDEEL 171 (204)
T ss_pred EEEEccccCChHHH
Confidence 99999999765543
No 415
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.31 E-value=8.9e-12 Score=106.68 Aligned_cols=123 Identities=19% Similarity=0.328 Sum_probs=77.7
Q ss_pred EEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhhcC
Q 016165 201 MLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQM 280 (394)
Q Consensus 201 aIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 280 (394)
+++|.+|+|||||+|.|++... ..++..|.+++...... ....+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~--~~~~~~~~~t~~~~~~~-----------------~~~~~----------------- 44 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD--AIVEDTPGVTRDRIYGE-----------------AEWGG----------------- 44 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE--EeecCCCCceeCceeEE-----------------EEECC-----------------
Confidence 5899999999999999998753 33444555544322100 00111
Q ss_pred CccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecC
Q 016165 281 PHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (394)
Q Consensus 281 ~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~ 360 (394)
..+.++||||+.+... ..... +.......+.++|++++++|+.. ........+.+.++..+.|+++|.||+
T Consensus 45 -----~~~~i~DtpG~~~~~~-~~~~~--~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~piiiv~nK~ 115 (157)
T cd01894 45 -----REFILIDTGGIEPDDE-GISKE--IREQAELAIEEADVILFVVDGRE-GLTPADEEIAKYLRKSKKPVILVVNKV 115 (157)
T ss_pred -----eEEEEEECCCCCCchh-HHHHH--HHHHHHHHHHhCCEEEEEEeccc-cCCccHHHHHHHHHhcCCCEEEEEECc
Confidence 1678999999976211 01100 11123456788999999999875 222333455666666679999999999
Q ss_pred CccCHHHH
Q 016165 361 DQVDTQQL 368 (394)
Q Consensus 361 Dl~~~~~~ 368 (394)
|+.+....
T Consensus 116 D~~~~~~~ 123 (157)
T cd01894 116 DNIKEEDE 123 (157)
T ss_pred ccCChHHH
Confidence 98765443
No 416
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=2.8e-11 Score=106.26 Aligned_cols=122 Identities=21% Similarity=0.312 Sum_probs=87.8
Q ss_pred cccEEEEeecCCCchhHHHHHHHhcc-CCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchh
Q 016165 196 AKPMVMLLGQYSTGKTTFIKHLLRTS-YPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSK 274 (394)
Q Consensus 196 ~~~~vaIvG~~gaGKSTLln~L~g~~-~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 274 (394)
..+-||++|++|+|||||+|+|+|.. . +.+|..|+.|+....+.- .
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~L--ArtSktPGrTq~iNff~~-------------------~------------ 69 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNL--ARTSKTPGRTQLINFFEV-------------------D------------ 69 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcce--eecCCCCCccceeEEEEe-------------------c------------
Confidence 34489999999999999999999955 4 788889999885432110 0
Q ss_pred hhhhcCCccccccceeecCCCCCc-----hhhhhhhcccChHHHHHHHhh-cC--CEEEEEeCCCCCCchHHHHHHHHHH
Q 016165 275 FECSQMPHSLLEHITLVDTPGVLS-----GEKQRTQRAYDFTGVTSWFAA-KC--DLILLLFDPHKLDISDEFKRVITSL 346 (394)
Q Consensus 275 ~~~~~~~~~~l~~~~l~Dt~g~ls-----Ge~qrv~~~~~~~~iaral~~-~~--dllLl~lD~~~~~~~~~~~~~l~~l 346 (394)
..+.++|.||..- .++.+.. .+.-.+++ +. ..+++++|..+ .+...+.++++.+
T Consensus 70 -----------~~~~lVDlPGYGyAkv~k~~~e~w~------~~i~~YL~~R~~L~~vvlliD~r~-~~~~~D~em~~~l 131 (200)
T COG0218 70 -----------DELRLVDLPGYGYAKVPKEVKEKWK------KLIEEYLEKRANLKGVVLLIDARH-PPKDLDREMIEFL 131 (200)
T ss_pred -----------CcEEEEeCCCcccccCCHHHHHHHH------HHHHHHHhhchhheEEEEEEECCC-CCcHHHHHHHHHH
Confidence 1468999998854 1233333 23334443 33 44555999987 5567678899999
Q ss_pred hcCCCeEEEEEecCCccCHHHH
Q 016165 347 RGHDDKIRVVLNKADQVDTQQL 368 (394)
Q Consensus 347 ~~~~~~viiv~nK~Dl~~~~~~ 368 (394)
...+.|++++.||+|.....+.
T Consensus 132 ~~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 132 LELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHcCCCeEEEEEccccCChhHH
Confidence 8899999999999999876554
No 417
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.31 E-value=2.9e-11 Score=105.00 Aligned_cols=123 Identities=21% Similarity=0.350 Sum_probs=77.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|+|||||+|.|++... ...+..|.+++.... ..+...+
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~--------------- 49 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEER--VIVSDIAGTTRDSID-----------------VPFEYDG--------------- 49 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccc--eeccCCCCCccCcee-----------------eEEEECC---------------
Confidence 799999999999999999998764 444444544432210 0000111
Q ss_pred cCCccccccceeecCCCCCch-h-hhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSG-E-KQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsG-e-~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv 356 (394)
..+.++||||.... . ....+. +.. .-+...+..+|++++++|+... .......+++.+...+.|++++
T Consensus 50 -------~~~~iiDtpG~~~~~~~~~~~e~-~~~-~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~iiv 119 (174)
T cd01895 50 -------KKYTLIDTAGIRRKGKVEEGIEK-YSV-LRTLKAIERADVVLLVIDATEG-ITEQDLRIAGLILEEGKALVIV 119 (174)
T ss_pred -------eeEEEEECCCCccccchhccHHH-HHH-HHHHHHHhhcCeEEEEEeCCCC-cchhHHHHHHHHHhcCCCEEEE
Confidence 15679999998641 0 000000 000 0123346799999999999762 2344455666666668899999
Q ss_pred EecCCccCH
Q 016165 357 LNKADQVDT 365 (394)
Q Consensus 357 ~nK~Dl~~~ 365 (394)
.||+|+.+.
T Consensus 120 ~nK~Dl~~~ 128 (174)
T cd01895 120 VNKWDLVEK 128 (174)
T ss_pred EeccccCCc
Confidence 999998755
No 418
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.30 E-value=8.4e-12 Score=109.17 Aligned_cols=120 Identities=23% Similarity=0.335 Sum_probs=72.5
Q ss_pred EeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCC-cccccccccchhhhhhcC
Q 016165 202 LLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFS-GLTTFGTAFLSKFECSQM 280 (394)
Q Consensus 202 IvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 280 (394)
|+|++|||||||+|+|++.. ..++..+.++..... + .+.+. +
T Consensus 1 iiG~~~~GKStll~~l~~~~---~~~~~~~~~t~~~~~----------~-------~~~~~~~----------------- 43 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK---PKVANYPFTTLEPNL----------G-------VVEVPDG----------------- 43 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC---ccccCCCceeecCcc----------e-------EEEcCCC-----------------
Confidence 58999999999999999987 344444444432110 0 00011 1
Q ss_pred CccccccceeecCCCCCch-hh-hhhhcccChHHHHHHHhhcCCEEEEEeCCCCC------CchHHHHHHHHHHhc----
Q 016165 281 PHSLLEHITLVDTPGVLSG-EK-QRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL------DISDEFKRVITSLRG---- 348 (394)
Q Consensus 281 ~~~~l~~~~l~Dt~g~lsG-e~-qrv~~~~~~~~iaral~~~~dllLl~lD~~~~------~~~~~~~~~l~~l~~---- 348 (394)
..+.++||||+... .. +.+.+ .....+.++|++++++|+... ....+...+...+..
T Consensus 44 -----~~~~i~DtpG~~~~~~~~~~~~~------~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (176)
T cd01881 44 -----ARIQVADIPGLIEGASEGRGLGN------QFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLE 112 (176)
T ss_pred -----CeEEEEeccccchhhhcCCCccH------HHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhh
Confidence 26789999998541 11 11110 123457889999999999763 122232233333321
Q ss_pred ------CCCeEEEEEecCCccCHHHHH
Q 016165 349 ------HDDKIRVVLNKADQVDTQQLM 369 (394)
Q Consensus 349 ------~~~~viiv~nK~Dl~~~~~~~ 369 (394)
.+.|+++|.||+|+.......
T Consensus 113 ~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 139 (176)
T cd01881 113 TILGLLTAKPVIYVLNKIDLDDAEELE 139 (176)
T ss_pred hHHHHHhhCCeEEEEEchhcCchhHHH
Confidence 267999999999997655543
No 419
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.30 E-value=1.1e-11 Score=131.68 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=83.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||+|.|+|.. ..++..|++|.+..... +...+
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~---~~vgn~pGvTve~k~g~-----------------~~~~~--------------- 49 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGAR---QRVGNWAGVTVERKEGQ-----------------FSTTD--------------- 49 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CccCCCCCceEeeEEEE-----------------EEcCc---------------
Confidence 69999999999999999999987 67777787776432100 11111
Q ss_pred cCCccccccceeecCCCCCc--hhhh--hhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLS--GEKQ--RTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~ls--Ge~q--rv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~ 352 (394)
..+.++||||+.| +... ... +.+++.++ .++|++++++|+++ .++...+..++.+.+.|
T Consensus 50 -------~~i~lvDtPG~ysl~~~~~~~s~~-----E~i~~~~l~~~~aD~vI~VvDat~---ler~l~l~~ql~e~giP 114 (772)
T PRK09554 50 -------HQVTLVDLPGTYSLTTISSQTSLD-----EQIACHYILSGDADLLINVVDASN---LERNLYLTLQLLELGIP 114 (772)
T ss_pred -------eEEEEEECCCccccccccccccHH-----HHHHHHHHhccCCCEEEEEecCCc---chhhHHHHHHHHHcCCC
Confidence 2678999999987 2111 111 11444443 58999999999987 44455666777778999
Q ss_pred EEEEEecCCccCH
Q 016165 353 IRVVLNKADQVDT 365 (394)
Q Consensus 353 viiv~nK~Dl~~~ 365 (394)
+++++||+|+.+.
T Consensus 115 vIvVlNK~Dl~~~ 127 (772)
T PRK09554 115 CIVALNMLDIAEK 127 (772)
T ss_pred EEEEEEchhhhhc
Confidence 9999999998643
No 420
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.30 E-value=1.2e-11 Score=131.48 Aligned_cols=126 Identities=23% Similarity=0.310 Sum_probs=87.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.|+|+|.+|||||||+|.|++... ..++..|+||++.+.. .+.+.+
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~--~~v~~~~gtT~d~~~~-----------------~~~~~~-------------- 497 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEER--AVVNDLAGTTRDPVDE-----------------IVEIDG-------------- 497 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccc--cccCCCCCCCcCccee-----------------EEEECC--------------
Confidence 4899999999999999999999885 6778888888754320 000112
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHH--HHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGV--TSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~i--aral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vii 355 (394)
..+.++||||+.... +.....++... +...+..+|++++++|++. +...+...++..+.+.++|+++
T Consensus 498 --------~~~~liDTaG~~~~~--~~~~~~e~~~~~r~~~~i~~advvilViDat~-~~s~~~~~i~~~~~~~~~piIi 566 (712)
T PRK09518 498 --------EDWLFIDTAGIKRRQ--HKLTGAEYYSSLRTQAAIERSELALFLFDASQ-PISEQDLKVMSMAVDAGRALVL 566 (712)
T ss_pred --------CEEEEEECCCcccCc--ccchhHHHHHHHHHHHHhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEE
Confidence 156799999986411 11100111111 2345789999999999986 4455666777777777899999
Q ss_pred EEecCCccCHHH
Q 016165 356 VLNKADQVDTQQ 367 (394)
Q Consensus 356 v~nK~Dl~~~~~ 367 (394)
|.||+|+.+.+.
T Consensus 567 V~NK~DL~~~~~ 578 (712)
T PRK09518 567 VFNKWDLMDEFR 578 (712)
T ss_pred EEEchhcCChhH
Confidence 999999976433
No 421
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.30 E-value=2.6e-11 Score=103.54 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=71.1
Q ss_pred EEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhhc
Q 016165 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQ 279 (394)
Q Consensus 200 vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 279 (394)
|+|+|++|||||||+|.|.+... .....|+.+..... ....+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~-------------------~~~~~---------------- 43 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF---SEDTIPTVGFNMRK-------------------VTKGN---------------- 43 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC---CcCccCCCCcceEE-------------------EEECC----------------
Confidence 79999999999999999999873 22223322221110 00011
Q ss_pred CCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEEE
Q 016165 280 MPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIRV 355 (394)
Q Consensus 280 ~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vii 355 (394)
..+.++|+||... |..+...++.++|++++++|+............+..+.. .+.|+++
T Consensus 44 ------~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 106 (159)
T cd04159 44 ------VTLKVWDLGGQPR-----------FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLV 106 (159)
T ss_pred ------EEEEEEECCCCHh-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEE
Confidence 1678999999743 111445678999999999999762212222233444322 3679999
Q ss_pred EEecCCccCHH
Q 016165 356 VLNKADQVDTQ 366 (394)
Q Consensus 356 v~nK~Dl~~~~ 366 (394)
|.||+|+.+..
T Consensus 107 v~nK~D~~~~~ 117 (159)
T cd04159 107 LGNKNDLPGAL 117 (159)
T ss_pred EEeCccccCCc
Confidence 99999987543
No 422
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.30 E-value=1.9e-11 Score=121.29 Aligned_cols=122 Identities=18% Similarity=0.233 Sum_probs=79.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
-|+|+|.||||||||||+|++.. ..++..|.||....... +.+.. +
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak---~kIa~ypfTTl~PnlG~-----------------v~~~~-----~--------- 205 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK---PKIANYHFTTLVPNLGV-----------------VETDD-----G--------- 205 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC---CccccCCcceeceEEEE-----------------EEEeC-----C---------
Confidence 79999999999999999999977 55677788776543210 00000 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCC---CchHHHHHHHHHHhc-----CC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL---DISDEFKRVITSLRG-----HD 350 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~---~~~~~~~~~l~~l~~-----~~ 350 (394)
..+.++|+||+..|..+.......| ...+.+++++|+++|.+.. .....+..+.++|.. .+
T Consensus 206 -------~~~~laD~PGliega~~~~gLg~~f----Lrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~ 274 (424)
T PRK12297 206 -------RSFVMADIPGLIEGASEGVGLGHQF----LRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLE 274 (424)
T ss_pred -------ceEEEEECCCCcccccccchHHHHH----HHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccC
Confidence 2678999999976432222200001 1235679999999999642 233444455555543 36
Q ss_pred CeEEEEEecCCccCH
Q 016165 351 DKIRVVLNKADQVDT 365 (394)
Q Consensus 351 ~~viiv~nK~Dl~~~ 365 (394)
+|+++|.||+|+.+.
T Consensus 275 kP~IVV~NK~DL~~~ 289 (424)
T PRK12297 275 RPQIVVANKMDLPEA 289 (424)
T ss_pred CcEEEEEeCCCCcCC
Confidence 799999999998543
No 423
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.29 E-value=3.1e-11 Score=104.16 Aligned_cols=115 Identities=25% Similarity=0.270 Sum_probs=69.1
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCC--CcccceeEEEEecCcccccCCceeeeccCCCCC-cccccccccchhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP--EPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFS-GLTTFGTAFLSKF 275 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~--~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~ 275 (394)
.|+++|++|||||||+|.|++... ..... .++++..... ..+.+. +
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~t~~~~~-----------------~~~~~~~~------------ 50 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIET--DRLPEEKKRGITIDLGF-----------------AYLDLPSG------------ 50 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCccc--ccchhhhccCceEEeee-----------------EEEEecCC------------
Confidence 589999999999999999998542 11111 1122211100 000000 1
Q ss_pred hhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCC-eEE
Q 016165 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDD-KIR 354 (394)
Q Consensus 276 ~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~-~vi 354 (394)
..+.++||||+.. |.......+.++|++++++|+.. +...+..+.+..+...+. |++
T Consensus 51 ----------~~~~~~DtpG~~~-----------~~~~~~~~~~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~~~~~~~i 108 (164)
T cd04171 51 ----------KRLGFIDVPGHEK-----------FIKNMLAGAGGIDLVLLVVAADE-GIMPQTREHLEILELLGIKRGL 108 (164)
T ss_pred ----------cEEEEEECCChHH-----------HHHHHHhhhhcCCEEEEEEECCC-CccHhHHHHHHHHHHhCCCcEE
Confidence 2678999999732 11133456789999999999864 222333333333333344 899
Q ss_pred EEEecCCccCHH
Q 016165 355 VVLNKADQVDTQ 366 (394)
Q Consensus 355 iv~nK~Dl~~~~ 366 (394)
++.||+|+.+..
T Consensus 109 lv~NK~Dl~~~~ 120 (164)
T cd04171 109 VVLTKADLVDED 120 (164)
T ss_pred EEEECccccCHH
Confidence 999999997653
No 424
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.29 E-value=2.7e-11 Score=108.90 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=71.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|+|+|...+ ..+ .+.++. .. ++... ..+...
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~--~~~-~~~~~~--~~-----------~t~~~-~~~~~~---------------- 49 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHE--EEG-AAPTGV--VE-----------TTMKR-TPYPHP---------------- 49 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC--CCC-ccccCc--cc-----------cccCc-eeeecC----------------
Confidence 6899999999999999999997631 111 111110 00 00000 000000
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
....+.++||||....... .. . + +.+..+.++|++|++.|.. .......+++.+++.+.++++|.|
T Consensus 50 -----~~~~l~l~DtpG~~~~~~~-~~-~--~--l~~~~~~~~d~~l~v~~~~---~~~~d~~~~~~l~~~~~~~ilV~n 115 (197)
T cd04104 50 -----KFPNVTLWDLPGIGSTAFP-PD-D--Y--LEEMKFSEYDFFIIISSTR---FSSNDVKLAKAIQCMGKKFYFVRT 115 (197)
T ss_pred -----CCCCceEEeCCCCCcccCC-HH-H--H--HHHhCccCcCEEEEEeCCC---CCHHHHHHHHHHHHhCCCEEEEEe
Confidence 0126789999998652110 11 0 0 2222357889999976654 256667778877777889999999
Q ss_pred cCCccC
Q 016165 359 KADQVD 364 (394)
Q Consensus 359 K~Dl~~ 364 (394)
|+|+..
T Consensus 116 K~D~~~ 121 (197)
T cd04104 116 KVDRDL 121 (197)
T ss_pred cccchh
Confidence 999864
No 425
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.29 E-value=1.4e-11 Score=130.99 Aligned_cols=122 Identities=20% Similarity=0.336 Sum_probs=87.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+|+|.+|+|||||+|.|+|... ++++..|+++++.+.... .+.+
T Consensus 277 ~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~-----------------~~~~--------------- 322 (712)
T PRK09518 277 VVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDA-----------------EWAG--------------- 322 (712)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEE-----------------EECC---------------
Confidence 899999999999999999999875 778888888876543110 0111
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
..+.++||||+... .+.+... +...+...+.++|++|+++|+.. +.......+.+.+++.++|+++|.|
T Consensus 323 -------~~~~liDT~G~~~~-~~~~~~~--~~~~~~~~~~~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~~~pvIlV~N 391 (712)
T PRK09518 323 -------TDFKLVDTGGWEAD-VEGIDSA--IASQAQIAVSLADAVVFVVDGQV-GLTSTDERIVRMLRRAGKPVVLAVN 391 (712)
T ss_pred -------EEEEEEeCCCcCCC-CccHHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 16789999998641 1111110 12245567899999999999975 3444555677777778899999999
Q ss_pred cCCccCH
Q 016165 359 KADQVDT 365 (394)
Q Consensus 359 K~Dl~~~ 365 (394)
|+|+.+.
T Consensus 392 K~D~~~~ 398 (712)
T PRK09518 392 KIDDQAS 398 (712)
T ss_pred Ccccccc
Confidence 9998643
No 426
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.28 E-value=3.8e-11 Score=105.35 Aligned_cols=120 Identities=20% Similarity=0.301 Sum_probs=74.0
Q ss_pred cccCCCCccc-EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCccccc
Q 016165 189 LTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTF 267 (394)
Q Consensus 189 l~~~~~~~~~-~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 267 (394)
++..++.... +|+++|++|||||||+|.+.+... ..+ .|+.+.... .+.+.+
T Consensus 5 ~~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~--~~~--~~t~g~~~~-------------------~~~~~~---- 57 (173)
T cd04154 5 IRKQKLKEREMRILILGLDNAGKTTILKKLLGEDI--DTI--SPTLGFQIK-------------------TLEYEG---- 57 (173)
T ss_pred hhhhhcCCCccEEEEECCCCCCHHHHHHHHccCCC--CCc--CCccccceE-------------------EEEECC----
Confidence 3344444443 899999999999999999998752 111 111110000 000011
Q ss_pred ccccchhhhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh
Q 016165 268 GTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR 347 (394)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~ 347 (394)
..+.++||||... |..+.+.++.++|++++++|............++..+.
T Consensus 58 ------------------~~l~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 108 (173)
T cd04154 58 ------------------YKLNIWDVGGQKT-----------LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELL 108 (173)
T ss_pred ------------------EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 1678999999732 11145567899999999999987222223333444432
Q ss_pred ----cCCCeEEEEEecCCccC
Q 016165 348 ----GHDDKIRVVLNKADQVD 364 (394)
Q Consensus 348 ----~~~~~viiv~nK~Dl~~ 364 (394)
..+.|+++|.||+|+.+
T Consensus 109 ~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 109 QEERLAGATLLILANKQDLPG 129 (173)
T ss_pred hChhhcCCCEEEEEECccccc
Confidence 24679999999999854
No 427
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4.1e-12 Score=135.67 Aligned_cols=90 Identities=23% Similarity=0.379 Sum_probs=83.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Q 016165 5 TGPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (394)
Q Consensus 5 ~~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~ 84 (394)
....|.++++|+++|+++|..+.+ ..|.++|+.|+.+|++|+||.+.|++||++||.+.+|+|++.||.+||||+..+.
T Consensus 117 ~~~~p~~~~qe~aky~q~f~s~~p-~~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 117 APFVPAITPQEQAKYDQIFRSLSP-SNGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred cccCCCCCHHHHHHHHHHHhccCC-CCCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHh
Confidence 345699999999999999999999 5899999999999999999999999999999999999999999999999999999
Q ss_pred c--CCCCCccCCC
Q 016165 85 D--GHQVTHDLWN 95 (394)
Q Consensus 85 ~--g~~~~~~l~~ 95 (394)
+ -.+.|..+++
T Consensus 196 ~~~~~p~P~~~p~ 208 (847)
T KOG0998|consen 196 NGNSEPVPSRLPP 208 (847)
T ss_pred hcccCCCCccCCc
Confidence 9 5666766666
No 428
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.27 E-value=6.4e-12 Score=114.38 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCCCCc-hhhhhhhcccChHHHHHHHhh----------cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEE
Q 016165 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAA----------KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (394)
Q Consensus 293 t~g~ls-Ge~qrv~~~~~~~~iaral~~----------~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv 356 (394)
.++.+| ||+|++. +|++++. +|+++|+ .+|+.. ...+.++++.+++++.+++++
T Consensus 120 ~~~~lS~G~~~r~~-------la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~---~~~~~~~l~~~~~~~~tii~i 189 (213)
T cd03279 120 PVSTLSGGETFLAS-------LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEA---LEAVATALELIRTENRMVGVI 189 (213)
T ss_pred CccccCHHHHHHHH-------HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEE
Confidence 567788 9999999 9999985 4688888 677655 667778888887767888888
Q ss_pred EecCCccCHHHHHHH-HhHhhhccce
Q 016165 357 LNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 357 ~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+ |+.+.+..+ ++++++++|-
T Consensus 190 t-----H~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 190 S-----HVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred E-----CchHHHHhhCcEEEEEecCC
Confidence 8 777777666 6777777653
No 429
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.27 E-value=5.9e-11 Score=105.66 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=74.0
Q ss_pred ccccCCCCccc-EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccc
Q 016165 188 LLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTT 266 (394)
Q Consensus 188 ~l~~~~~~~~~-~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 266 (394)
+++++++.... +++++|++|||||||+|.+.+... .. ..|+.+-... .+.+.+
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~--~~--~~~T~~~~~~-------------------~i~~~~--- 62 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRL--AQ--HVPTLHPTSE-------------------ELTIGN--- 62 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCC--cc--cCCccCcceE-------------------EEEECC---
Confidence 34555555444 899999999999999999998653 11 1111110000 000111
Q ss_pred cccccchhhhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH
Q 016165 267 FGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL 346 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l 346 (394)
..+.++|+||... . ..+.+.++.+++.+++++|.............+..+
T Consensus 63 -------------------~~~~l~D~~G~~~--~---------~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i 112 (190)
T cd00879 63 -------------------IKFKTFDLGGHEQ--A---------RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSL 112 (190)
T ss_pred -------------------EEEEEEECCCCHH--H---------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHH
Confidence 1668999999732 1 114566789999999999997622222233344333
Q ss_pred hc----CCCeEEEEEecCCcc
Q 016165 347 RG----HDDKIRVVLNKADQV 363 (394)
Q Consensus 347 ~~----~~~~viiv~nK~Dl~ 363 (394)
.. .+.|++++.||+|+.
T Consensus 113 ~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 113 LSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred HcCccccCCCEEEEEeCCCCC
Confidence 22 357999999999985
No 430
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.27 E-value=4.3e-11 Score=104.53 Aligned_cols=111 Identities=21% Similarity=0.293 Sum_probs=72.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+.+... ... .|+.+-.... +.+.+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~~--~~t~g~~~~~-------------------~~~~~--------------- 42 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KKV--APTVGFTPTK-------------------LRLDK--------------- 42 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--ccc--cCcccceEEE-------------------EEECC---------------
Confidence 378999999999999999997631 111 1111110000 00111
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++|+||... |..+.+.++.+++++++++|++......+...++..+.. .+.|++
T Consensus 43 -------~~~~i~D~~G~~~-----------~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pil 104 (167)
T cd04161 43 -------YEVCIFDLGGGAN-----------FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPIL 104 (167)
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEE
Confidence 1678999999722 112556788999999999999873333444555665543 367999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 105 iv~NK~Dl~~~ 115 (167)
T cd04161 105 VLANKQDKKNA 115 (167)
T ss_pred EEEeCCCCcCC
Confidence 99999998654
No 431
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.26 E-value=3.5e-11 Score=104.44 Aligned_cols=116 Identities=24% Similarity=0.365 Sum_probs=73.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
|.|+|+|++|||||||+|.|.+... .....++++..... ... .... ..+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~---~~~~~~~~t~~~~~-----------~~~--~~~~-~~~-------------- 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV---AAGEAGGITQHIGA-----------FEV--PAEV-LKI-------------- 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc---ccccCCCeEEeecc-----------EEE--eccc-CCc--------------
Confidence 3689999999999999999998763 22222222221100 000 0000 001
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~ 357 (394)
..+.++||||... |..+....+..+|++++++|+.. ....+....+..+...+.|+++|.
T Consensus 50 --------~~~~iiDtpG~~~-----------~~~~~~~~~~~~d~il~v~d~~~-~~~~~~~~~~~~~~~~~~p~ivv~ 109 (168)
T cd01887 50 --------PGITFIDTPGHEA-----------FTNMRARGASLTDIAILVVAADD-GVMPQTIEAIKLAKAANVPFIVAL 109 (168)
T ss_pred --------ceEEEEeCCCcHH-----------HHHHHHHHHhhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEE
Confidence 2678999999843 11133345689999999999976 223445555666666788999999
Q ss_pred ecCCccC
Q 016165 358 NKADQVD 364 (394)
Q Consensus 358 nK~Dl~~ 364 (394)
||+|+.+
T Consensus 110 NK~Dl~~ 116 (168)
T cd01887 110 NKIDKPN 116 (168)
T ss_pred Eceeccc
Confidence 9999874
No 432
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.25 E-value=3.8e-11 Score=112.99 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=51.6
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
++.++||||+.. |..-+...+..+|++|+++|+.. +...+...+++.+.+.++|+++++||+|+.+
T Consensus 65 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 65 RINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVA-GVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHHHHcCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 778999999854 11133456789999999999976 5566667778877778899999999999863
No 433
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.24 E-value=1e-11 Score=122.48 Aligned_cols=162 Identities=21% Similarity=0.233 Sum_probs=99.6
Q ss_pred ccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcc-
Q 016165 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGL- 264 (394)
Q Consensus 188 ~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~- 264 (394)
+.++++|-+.. +|++|||||||||||++.++|... |..|...-. . +..++ +..|....-.++
T Consensus 405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--------p~~G~vs~~-~---H~~~~---~y~Qh~~e~ldl~ 469 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--------PTIGMVSRH-S---HNKLP---RYNQHLAEQLDLD 469 (614)
T ss_pred hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--------ccccccccc-c---cccch---hhhhhhHhhcCcc
Confidence 55556665555 999999999999999999999994 222221100 0 00000 000000000000
Q ss_pred -cccccccchh---hhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeC
Q 016165 265 -TTFGTAFLSK---FECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFD 329 (394)
Q Consensus 265 -~~~~~~~~~~---~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD 329 (394)
....+ .+.. ....+..+.++.++++. | ....+| |++.||. .|+..++.|.++|+ .+|
T Consensus 470 ~s~le~-~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVl-------Fa~l~~kqP~lLlLDEPtnhLD 541 (614)
T KOG0927|consen 470 KSSLEF-MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVL-------FARLAVKQPHLLLLDEPTNHLD 541 (614)
T ss_pred hhHHHH-HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHH-------HHHHHhcCCcEEEecCCCcCCC
Confidence 00000 0111 12233355677788886 4 568888 9999999 89999999999999 677
Q ss_pred CCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 330 PHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 330 ~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
... .+...+.| .+....||+|. ||...+..+ .++|...+|.+.
T Consensus 542 i~t---id~laeai---Ne~~Ggvv~vS-----HDfrlI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 542 IET---IDALAEAI---NEFPGGVVLVS-----HDFRLISQVAEEIWVCENGTVT 585 (614)
T ss_pred chh---HHHHHHHH---hccCCceeeee-----chhhHHHHHHHHhHhhccCcee
Confidence 654 33333443 34445677777 888888887 889999888775
No 434
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.24 E-value=6.6e-11 Score=104.59 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=50.0
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~ 366 (394)
.+.++||||..+ |.......+.++|++++++|+.. .......+++..+...+.++++++||+|+...+
T Consensus 63 ~~~liDtpG~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~ 130 (189)
T cd00881 63 RVNFIDTPGHED-----------FSSEVIRGLSVSDGAILVVDANE-GVQPQTREHLRIAREGGLPIIVAINKIDRVGEE 130 (189)
T ss_pred EEEEEeCCCcHH-----------HHHHHHHHHHhcCEEEEEEECCC-CCcHHHHHHHHHHHHCCCCeEEEEECCCCcchh
Confidence 678999999843 11134455789999999999976 334455566666666788999999999997643
No 435
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.23 E-value=4.6e-11 Score=103.02 Aligned_cols=114 Identities=22% Similarity=0.271 Sum_probs=74.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||+|.+.+.. ...+..|.++.+..... +.+.+. .
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~----~--------- 48 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT---FDNQYQATIGIDFLSKT-----------------MYLEDK----T--------- 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC---CCccCCCceeeeEEEEE-----------------EEECCE----E---------
Confidence 58999999999999999999887 33344454444322100 000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc-C--CCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-H--DDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~-~--~~~vii 355 (394)
..+.++||||... |..+...++++++++++++|............++..+.. . +.|+++
T Consensus 49 -------~~l~~~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iil 110 (161)
T cd01861 49 -------VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVL 110 (161)
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1578999999621 112456678999999999999763223444455555432 2 489999
Q ss_pred EEecCCcc
Q 016165 356 VLNKADQV 363 (394)
Q Consensus 356 v~nK~Dl~ 363 (394)
+.||+|+.
T Consensus 111 v~nK~D~~ 118 (161)
T cd01861 111 VGNKTDLS 118 (161)
T ss_pred EEEChhcc
Confidence 99999984
No 436
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.22 E-value=1.1e-10 Score=101.69 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=72.3
Q ss_pred EEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhhc
Q 016165 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQ 279 (394)
Q Consensus 200 vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 279 (394)
|+++|++|+|||||++.+.+... .....|+.+...+. +...+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~---~~~~~pt~g~~~~~-------------------i~~~~---------------- 43 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS---LESVVPTTGFNSVA-------------------IPTQD---------------- 43 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC---cccccccCCcceEE-------------------EeeCC----------------
Confidence 78999999999999999998652 11122222211110 00011
Q ss_pred CCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc--CCCeEEEEE
Q 016165 280 MPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRVVL 357 (394)
Q Consensus 280 ~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~--~~~~viiv~ 357 (394)
..+.++|++|... |..+...+++++|++++++|.+..........++..+.. .+.|+++|.
T Consensus 44 ------~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~ 106 (164)
T cd04162 44 ------AIMELLEIGGSQN-----------LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLA 106 (164)
T ss_pred ------eEEEEEECCCCcc-----------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 1678999999732 112456678999999999999762212333445555532 478999999
Q ss_pred ecCCccCHH
Q 016165 358 NKADQVDTQ 366 (394)
Q Consensus 358 nK~Dl~~~~ 366 (394)
||+|+.+..
T Consensus 107 NK~Dl~~~~ 115 (164)
T cd04162 107 NKQDLPAAR 115 (164)
T ss_pred eCcCCcCCC
Confidence 999986543
No 437
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.22 E-value=5.1e-11 Score=103.47 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=46.8
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEEEEEecCCc
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIRVVLNKADQ 362 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~viiv~nK~Dl 362 (394)
.+.++||||+.. |..+.+.++..+|++++++|+...........++..+.+ .+.|++++.||+|+
T Consensus 51 ~~~l~Dt~G~~~-----------~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 51 RLKFWDLGGQES-----------LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred EEEEEECCCChh-----------hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 778999999843 112456678999999999998762222333344444332 46899999999998
Q ss_pred cCH
Q 016165 363 VDT 365 (394)
Q Consensus 363 ~~~ 365 (394)
.+.
T Consensus 120 ~~~ 122 (167)
T cd04160 120 PDA 122 (167)
T ss_pred ccC
Confidence 543
No 438
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.22 E-value=6.9e-11 Score=102.46 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=48.4
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcC--CCeEEEEEecCCcc
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--DDKIRVVLNKADQV 363 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~--~~~viiv~nK~Dl~ 363 (394)
.+.++||+|... |..+...++.++|++|+++|++..........++..+++. +.|+++|.||+|+.
T Consensus 50 ~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 50 LVDFWDTAGQER-----------FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEeCCCchh-----------hhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 668999999732 2225667889999999999997633334445666666543 67999999999984
No 439
>PRK04213 GTP-binding protein; Provisional
Probab=99.21 E-value=1.1e-10 Score=105.06 Aligned_cols=116 Identities=21% Similarity=0.303 Sum_probs=72.6
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.|+++|++|||||||+|.|.|.. ..++..|++++....+. +
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~---~~~~~~~~~t~~~~~~~-------------------~---------------- 51 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKK---VRVGKRPGVTRKPNHYD-------------------W---------------- 51 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CccCCCCceeeCceEEe-------------------e----------------
Confidence 489999999999999999999876 44555565554321100 0
Q ss_pred hcCCccccccceeecCCCCCc--h---h-hhhhhcccChHHHHHHH----hhcCCEEEEEeCCCCCC----------chH
Q 016165 278 SQMPHSLLEHITLVDTPGVLS--G---E-KQRTQRAYDFTGVTSWF----AAKCDLILLLFDPHKLD----------ISD 337 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls--G---e-~qrv~~~~~~~~iaral----~~~~dllLl~lD~~~~~----------~~~ 337 (394)
..+.++||||... + . +.+.. .+...+ +..++++++++|+.... ...
T Consensus 52 --------~~~~l~Dt~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~ 117 (201)
T PRK04213 52 --------GDFILTDLPGFGFMSGVPKEVQEKIK------DEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIP 117 (201)
T ss_pred --------cceEEEeCCccccccccCHHHHHHHH------HHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcH
Confidence 1467999999632 1 1 12221 122222 34568888999986410 011
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 338 EFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 338 ~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
...++++.+...+.|+++|.||+|+.+.
T Consensus 118 ~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 118 IDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred HHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 2234455555568899999999998654
No 440
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.21 E-value=4.2e-11 Score=121.85 Aligned_cols=112 Identities=26% Similarity=0.358 Sum_probs=84.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.||++|.||+|||||+|.|+|.. ..|+..|++|-..- +..+.+.|
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~---q~VgNwpGvTVEkk-----------------eg~~~~~~--------------- 49 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGAN---QKVGNWPGVTVEKK-----------------EGKLKYKG--------------- 49 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccC---ceecCCCCeeEEEE-----------------EEEEEecC---------------
Confidence 59999999999999999999999 78888777664332 11122222
Q ss_pred cCCccccccceeecCCCCCc----hhhhhhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLS----GEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~ls----Ge~qrv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~ 352 (394)
+.+.++|.||.+| .+.++ +||.++ .+||+++-++|+++ -++-..+.-++.+-|.|
T Consensus 50 -------~~i~ivDLPG~YSL~~~S~DE~---------Var~~ll~~~~D~ivnVvDAtn---LeRnLyltlQLlE~g~p 110 (653)
T COG0370 50 -------HEIEIVDLPGTYSLTAYSEDEK---------VARDFLLEGKPDLIVNVVDATN---LERNLYLTLQLLELGIP 110 (653)
T ss_pred -------ceEEEEeCCCcCCCCCCCchHH---------HHHHHHhcCCCCEEEEEcccch---HHHHHHHHHHHHHcCCC
Confidence 2688999999999 24444 445555 46899999999998 55556666677778999
Q ss_pred EEEEEecCCccC
Q 016165 353 IRVVLNKADQVD 364 (394)
Q Consensus 353 viiv~nK~Dl~~ 364 (394)
++++.|.+|...
T Consensus 111 ~ilaLNm~D~A~ 122 (653)
T COG0370 111 MILALNMIDEAK 122 (653)
T ss_pred eEEEeccHhhHH
Confidence 999999999643
No 441
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.21 E-value=9.6e-11 Score=101.27 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=72.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+++++|++|+|||||++.+++... ++..+.+.+..... ...+.+. .
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~----~~~~~~t~~~~~~~-----------------~~~~~~~----~--------- 49 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYTK-----------------QCEIDGQ----W--------- 49 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceEEE-----------------EEEECCE----E---------
Confidence 699999999999999999998652 22222222211100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
..+.++||||... |..+.+.++.++|.+++++|+...........++..+. ..+.|++
T Consensus 50 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 111 (164)
T cd04145 50 -------AILDILDTAGQEE-----------FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI 111 (164)
T ss_pred -------EEEEEEECCCCcc-----------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 1567899999732 22255677899999999999987322233344444433 2367999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
++.||+|+...
T Consensus 112 iv~NK~Dl~~~ 122 (164)
T cd04145 112 LVGNKADLEHQ 122 (164)
T ss_pred EEeeCcccccc
Confidence 99999998643
No 442
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.21 E-value=9.7e-11 Score=105.82 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=54.4
Q ss_pred cCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchH-HHHHHHHHHhcC-CCeEEEEEecCCcc
Q 016165 292 DTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISD-EFKRVITSLRGH-DDKIRVVLNKADQV 363 (394)
Q Consensus 292 Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~-~~~~~l~~l~~~-~~~viiv~nK~Dl~ 363 (394)
..++.+| ||++++.-++ ...++++++.+|+++|+ .+|+.. .. .+.+++.++.+. +.++++++ |
T Consensus 111 ~~~~~LS~G~~~~~~la~-rlala~al~~~p~illlDEP~~~LD~~~---~~~~l~~~l~~~~~~~~~~iiiit-----H 181 (204)
T cd03240 111 DMRGRCSGGEKVLASLII-RLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIEERKSQKNFQLIVIT-----H 181 (204)
T ss_pred cCccccCccHHHHHHHHH-HHHHHHHhccCCCEEEEcCCccccCHHH---HHHHHHHHHHHHHhccCCEEEEEE-----e
Confidence 3677888 9999742000 01188999999999999 788765 66 788889888765 67888888 5
Q ss_pred CHHHHHHHHhHhhhc
Q 016165 364 DTQQLMRVYGALMWS 378 (394)
Q Consensus 364 ~~~~~~~~~~~~~~~ 378 (394)
+.+....+++++.+.
T Consensus 182 ~~~~~~~~d~i~~l~ 196 (204)
T cd03240 182 DEELVDAADHIYRVE 196 (204)
T ss_pred cHHHHhhCCEEEEEe
Confidence 555544446665553
No 443
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.20 E-value=1.5e-10 Score=99.89 Aligned_cols=113 Identities=20% Similarity=0.155 Sum_probs=68.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||++.+.+... ......|+.+..... +...+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~--~~~~~~~t~g~~~~~-------------------~~~~~--------------- 44 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA--QSQIIVPTVGFNVES-------------------FEKGN--------------- 44 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC--CcceecCccccceEE-------------------EEECC---------------
Confidence 378999999999999999998642 010111211110000 00001
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh------cCCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR------GHDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~------~~~~~ 352 (394)
..+.++||||... |..+...++.++|++|+++|.+..........+++.+. ..+.|
T Consensus 45 -------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 106 (162)
T cd04157 45 -------LSFTAFDMSGQGK-----------YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP 106 (162)
T ss_pred -------EEEEEEECCCCHh-----------hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC
Confidence 1678999999843 11244566899999999999986221122223333332 24689
Q ss_pred EEEEEecCCccCH
Q 016165 353 IRVVLNKADQVDT 365 (394)
Q Consensus 353 viiv~nK~Dl~~~ 365 (394)
+++|.||+|+.+.
T Consensus 107 ~iiv~NK~Dl~~~ 119 (162)
T cd04157 107 ILFFANKMDLPDA 119 (162)
T ss_pred EEEEEeCccccCC
Confidence 9999999998653
No 444
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.20 E-value=1.5e-10 Score=100.58 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=70.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|+|||||+|.+++... .....|........ ... ..+ ..
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~--------------~~~----~~~----~~--------- 48 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTF---RESYIPTIEDTYRQ--------------VIS----CSK----NI--------- 48 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCcCCcchheEEE--------------EEE----ECC----EE---------
Confidence 689999999999999999998663 11112221111000 000 000 00
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc------CCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~------~~~~ 352 (394)
..+.++||||... |..+.+.....++.+++++|.........+..+++.+.+ .+.|
T Consensus 49 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 110 (165)
T cd04140 49 -------CTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP 110 (165)
T ss_pred -------EEEEEEECCCCCc-----------chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 1678999999843 112445567899999999999873323334444433322 3579
Q ss_pred EEEEEecCCccC
Q 016165 353 IRVVLNKADQVD 364 (394)
Q Consensus 353 viiv~nK~Dl~~ 364 (394)
+++|.||+|+..
T Consensus 111 iilv~nK~Dl~~ 122 (165)
T cd04140 111 IMLVGNKCDESH 122 (165)
T ss_pred EEEEEECccccc
Confidence 999999999865
No 445
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.20 E-value=1.1e-10 Score=100.69 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=71.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||++.+.+... .....|+++..... . +.+.+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~------------~------~~~~~~-------------- 47 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRK------------Q------IEVDGQ-------------- 47 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CcccCCchhhhEEE------------E------EEECCE--------------
Confidence 689999999999999999997652 11112222111000 0 000110
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
-..+.++||||... |..+...++++++.+++++|.......+....+++.+.+ .+.|++
T Consensus 48 ------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 110 (163)
T cd04136 48 ------QCMLEILDTAGTEQ-----------FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV 110 (163)
T ss_pred ------EEEEEEEECCCccc-----------cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 01567899999732 222556678999999999999763333444455555432 367999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 111 lv~nK~Dl~~ 120 (163)
T cd04136 111 LVGNKCDLED 120 (163)
T ss_pred EEEECccccc
Confidence 9999999854
No 446
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.20 E-value=1.4e-10 Score=101.27 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=74.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||++.+++... .....+..+....... +.+.+. .
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~~----~--------- 52 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARM-----------------ITIDGK----Q--------- 52 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCCccceeEEEEE-----------------EEECCE----E---------
Confidence 799999999999999999998763 2222222222110000 000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++||+|.. + |..+.+.++.++|++|+++|+........+..++..+++ .+.|+++
T Consensus 53 -------~~~~i~Dt~G~~---~--------~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pviv 114 (168)
T cd01866 53 -------IKLQIWDTAGQE---S--------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIML 114 (168)
T ss_pred -------EEEEEEECCCcH---H--------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 167899999962 1 222556778999999999999863334455566666644 3679999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 115 v~nK~Dl~~ 123 (168)
T cd01866 115 IGNKCDLES 123 (168)
T ss_pred EEECccccc
Confidence 999999863
No 447
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.19 E-value=8.9e-11 Score=101.40 Aligned_cols=115 Identities=21% Similarity=0.277 Sum_probs=72.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||++.+.+... .....+..+...... .+.+.+. .
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~----~--------- 48 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF---SEQYKSTIGVDFKTK-----------------TIEVDGK----R--------- 48 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEE-----------------EEEECCE----E---------
Confidence 589999999999999999998762 222222222111000 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++|+||... |..+.+.++.++|++++++|+...........++..+.. .+.|+++
T Consensus 49 -------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivv 110 (164)
T smart00175 49 -------VKLQIWDTAGQER-----------FRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIML 110 (164)
T ss_pred -------EEEEEEECCChHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 1567999999632 112556778999999999999873333334445555443 4689999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
+.||+|+..
T Consensus 111 v~nK~D~~~ 119 (164)
T smart00175 111 VGNKSDLED 119 (164)
T ss_pred EEEchhccc
Confidence 999999865
No 448
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.19 E-value=2.2e-10 Score=100.13 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=68.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+|+|++|||||||++.|.+... ... .|..+-... .+.+.+
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~--~~~--~~t~g~~~~-------------------~i~~~~-------------- 57 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDI--SHI--TPTQGFNIK-------------------TVQSDG-------------- 57 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCC--ccc--CCCCCcceE-------------------EEEECC--------------
Confidence 4899999999999999999999763 111 111110000 000111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH----hcCCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l----~~~~~~v 353 (394)
..+.++|++|... ... .....+++++.+++++|.............+..+ ...+.|+
T Consensus 58 --------~~~~~~D~~G~~~----~~~-------~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 118 (173)
T cd04155 58 --------FKLNVWDIGGQRA----IRP-------YWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPV 118 (173)
T ss_pred --------EEEEEEECCCCHH----HHH-------HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence 1678899999732 111 3345678999999999997621112222233222 2246899
Q ss_pred EEEEecCCccCH
Q 016165 354 RVVLNKADQVDT 365 (394)
Q Consensus 354 iiv~nK~Dl~~~ 365 (394)
+++.||+|+.+.
T Consensus 119 ivv~nK~D~~~~ 130 (173)
T cd04155 119 LVFANKQDLATA 130 (173)
T ss_pred EEEEECCCCccC
Confidence 999999998653
No 449
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.19 E-value=8.3e-11 Score=102.16 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=72.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||++.+.+... .....+..+.+... ..+.+.+. .
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~---~~~~~~t~~~~~~~-----------------~~~~~~~~----~-------- 51 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTF---SERQGNTIGVDFTM-----------------KTLEIEGK----R-------- 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC---cccCCCccceEEEE-----------------EEEEECCE----E--------
Confidence 3799999999999999999986542 11111111111100 00001110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vi 354 (394)
..+.++||||... |..+.+.+++++|++++++|+...........++..+.. .+.|++
T Consensus 52 --------~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i 112 (165)
T cd01864 52 --------VKLQIWDTAGQER-----------FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLL 112 (165)
T ss_pred --------EEEEEEECCChHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE
Confidence 1568999999621 222556778999999999999873333444456655543 367899
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 113 vv~nK~Dl~~~ 123 (165)
T cd01864 113 LIGNKCDLEEQ 123 (165)
T ss_pred EEEECcccccc
Confidence 99999998754
No 450
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.19 E-value=2.2e-10 Score=100.24 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=71.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|.+|||||||++.+..... ....|+.+..... +....
T Consensus 11 kv~i~G~~~~GKTsli~~l~~~~~----~~~~~t~g~~~~~-------------------~~~~~--------------- 52 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKLGQS----VTTIPTVGFNVET-------------------VTYKN--------------- 52 (168)
T ss_pred EEEEECcCCCCHHHHHHHHccCCC----ccccCCcccceEE-------------------EEECC---------------
Confidence 799999999999999999976442 1123333221100 00011
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||+|... +..+.+.++.++|++|+++|++......+..+.+..+.. .+.|++
T Consensus 53 -------~~~~l~Dt~G~~~-----------~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~pii 114 (168)
T cd04149 53 -------VKFNVWDVGGQDK-----------IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLL 114 (168)
T ss_pred -------EEEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEE
Confidence 1678999999832 112456678999999999999873223334444444432 357999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+++
T Consensus 115 lv~NK~Dl~~ 124 (168)
T cd04149 115 VFANKQDLPD 124 (168)
T ss_pred EEEECcCCcc
Confidence 9999999864
No 451
>PRK09866 hypothetical protein; Provisional
Probab=99.19 E-value=4.1e-10 Score=114.37 Aligned_cols=73 Identities=25% Similarity=0.250 Sum_probs=51.6
Q ss_pred cccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCC--CeEEEEEecCCc
Q 016165 285 LEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHD--DKIRVVLNKADQ 362 (394)
Q Consensus 285 l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~--~~viiv~nK~Dl 362 (394)
...+.++||||+.+.....+.+ .....+.++|+||+++|+.. ........+++.+++.+ .|+++|+||+|+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k------~M~eqL~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQK------MLNQQLARASAVLAVLDYTQ-LKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred cCCEEEEECCCCCCccchHHHH------HHHHHHhhCCEEEEEEeCCC-CCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 4667889999998732222221 12236899999999999975 23445566777776655 499999999998
Q ss_pred cC
Q 016165 363 VD 364 (394)
Q Consensus 363 ~~ 364 (394)
.+
T Consensus 302 ~d 303 (741)
T PRK09866 302 QD 303 (741)
T ss_pred CC
Confidence 75
No 452
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.19 E-value=1.6e-10 Score=99.82 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=73.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+++++|++|+|||||++.+.+... .....+..+..... .. +.+.+. .
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~---~~~~~~~~~~~~~~-------------~~----~~~~~~----~--------- 48 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKF---KEDSQHTIGVEFGS-------------KI----IRVGGK----R--------- 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeeEEE-------------EE----EEECCE----E---------
Confidence 589999999999999999998763 22112222111100 00 000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH---hcCCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l---~~~~~~vii 355 (394)
..+.++|+||... |..+.+.++.++|.+++++|+........+..++..+ ...+.|+++
T Consensus 49 -------~~l~l~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiv 110 (161)
T cd04113 49 -------VKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVIL 110 (161)
T ss_pred -------EEEEEEECcchHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 1678999999732 1225667889999999999998733333344555444 334789999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+...
T Consensus 111 v~nK~D~~~~ 120 (161)
T cd04113 111 VGNKSDLADQ 120 (161)
T ss_pred EEEchhcchh
Confidence 9999998653
No 453
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.19 E-value=2.2e-10 Score=101.79 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=69.7
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.+.+... ..+ .|+.+.... .+.+.+.
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~--~~~--~~t~~~~~~-------------------~~~~~~~------------- 61 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRL--AQH--QPTQHPTSE-------------------ELAIGNI------------- 61 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--ccc--CCccccceE-------------------EEEECCE-------------
Confidence 4899999999999999999998652 211 221111000 0001111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
.+.++|+||...- ..+...++.++|.+++++|.............+..+.+ .+.|+
T Consensus 62 ---------~~~~~D~~G~~~~-----------~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~pi 121 (184)
T smart00178 62 ---------KFTTFDLGGHQQA-----------RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPF 121 (184)
T ss_pred ---------EEEEEECCCCHHH-----------HHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCE
Confidence 6789999998321 11445678999999999999762212222333433322 46899
Q ss_pred EEEEecCCcc
Q 016165 354 RVVLNKADQV 363 (394)
Q Consensus 354 iiv~nK~Dl~ 363 (394)
++|.||+|+.
T Consensus 122 liv~NK~Dl~ 131 (184)
T smart00178 122 LILGNKIDAP 131 (184)
T ss_pred EEEEeCcccc
Confidence 9999999985
No 454
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.19 E-value=2e-10 Score=98.78 Aligned_cols=114 Identities=15% Similarity=0.243 Sum_probs=69.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|+|||||+|.+++... .....|+.+..... ...+.+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~-------------- 47 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRK------------------QVVIDGE-------------- 47 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---cCCcCCcchheEEE------------------EEEECCE--------------
Confidence 689999999999999999998663 11112222111000 0000110
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
...+.++||+|... |..+...++.+++.+++++|............++..+. ..+.|++
T Consensus 48 ------~~~~~i~Dt~G~~~-----------~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii 110 (162)
T cd04138 48 ------TCLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110 (162)
T ss_pred ------EEEEEEEECCCCcc-----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 01567899999732 12245567889999999999876222223333333333 2367999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 111 vv~nK~Dl~~ 120 (162)
T cd04138 111 LVGNKCDLAA 120 (162)
T ss_pred EEEECccccc
Confidence 9999999854
No 455
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.19 E-value=1.9e-10 Score=99.24 Aligned_cols=111 Identities=21% Similarity=0.227 Sum_probs=68.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|+|||||++.+..... . ...|+.+..... +.+.+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~--~--~~~~t~~~~~~~-------------------~~~~~--------------- 42 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV--V--TTIPTIGFNVET-------------------VTYKN--------------- 42 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC--c--CcCCccCcCeEE-------------------EEECC---------------
Confidence 489999999999999999976542 1 112211110000 00011
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHH-Hhc---CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITS-LRG---HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~-l~~---~~~~vi 354 (394)
..+.++||||..+ |..+.+.++.+++++|+++|...........+.+.. +.. .+.|++
T Consensus 43 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 104 (158)
T cd04151 43 -------LKFQVWDLGGQTS-----------IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLL 104 (158)
T ss_pred -------EEEEEEECCCCHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEE
Confidence 1678999999843 112556778999999999999762111111222222 221 368999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 105 iv~nK~Dl~~~ 115 (158)
T cd04151 105 VFANKQDMPGA 115 (158)
T ss_pred EEEeCCCCCCC
Confidence 99999998753
No 456
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.18 E-value=1.6e-10 Score=100.28 Aligned_cols=115 Identities=23% Similarity=0.326 Sum_probs=74.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....|..+....... +.+.+. .
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~~----~--------- 51 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEF---NLDSKSTIGVEFATRS-----------------IQIDGK----T--------- 51 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceEEEEEE-----------------EEECCE----E---------
Confidence 699999999999999999998773 2222344332211100 000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++|+||... |..+....+.+++.+++++|.........+.+++..+.+ .+.|+++
T Consensus 52 -------~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~v 113 (165)
T cd01868 52 -------IKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIML 113 (165)
T ss_pred -------EEEEEEeCCChHH-----------HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 1568999999732 112455678999999999999763333444456655543 3579999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 114 v~nK~Dl~~ 122 (165)
T cd01868 114 VGNKSDLRH 122 (165)
T ss_pred EEECccccc
Confidence 999999854
No 457
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.18 E-value=1.6e-10 Score=106.52 Aligned_cols=88 Identities=31% Similarity=0.459 Sum_probs=57.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|++|+|||||+|.|+|.. ..++..|.++..... | .+.+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~---~~v~~~~~tT~~~~~----------g-------~~~~~~--------------- 46 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK---SEVAAYEFTTLTCVP----------G-------VLEYKG--------------- 46 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ccccCCCCccccceE----------E-------EEEECC---------------
Confidence 58999999999999999999987 455555555542211 0 000112
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK 332 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~ 332 (394)
..+.++||||+.++....... .......++++|++++++|+..
T Consensus 47 -------~~i~l~DtpG~~~~~~~~~~~----~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 47 -------AKIQLLDLPGIIEGAADGKGR----GRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred -------eEEEEEECCCcccccccchhH----HHHHHHhhccCCEEEEEecCCc
Confidence 167899999987632211110 0122356899999999999865
No 458
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.18 E-value=3.9e-11 Score=109.00 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=53.9
Q ss_pred cccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhh----cCCEEEE-----EeCCCCCCchHHHHHHHHHHhc
Q 016165 283 SLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA----KCDLILL-----LFDPHKLDISDEFKRVITSLRG 348 (394)
Q Consensus 283 ~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~----~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~ 348 (394)
++++.+++.+ .++.+| |++|++. +|++++. .|+++++ .+|+.. ...+.++++.+.+
T Consensus 110 ~~~~~~~L~~~~~~~~~~lS~G~~~r~~-------la~al~~~~~~~p~ililDEPt~gLD~~~---~~~l~~~l~~~~~ 179 (212)
T cd03274 110 EVEQIAQMPKKSWKNISNLSGGEKTLSS-------LALVFALHHYKPTPLYVMDEIDAALDFRN---VSIVANYIKERTK 179 (212)
T ss_pred cEEEeeccccccccchhhcCHHHHHHHH-------HHHHHHhcccCCCCEEEEcCCCcCCCHHH---HHHHHHHHHHHcC
Confidence 3444455543 456777 9999999 9999874 4799998 777765 7777888888754
Q ss_pred CCCeEEEEEecCCccCHHHHHHH-HhHhhhc
Q 016165 349 HDDKIRVVLNKADQVDTQQLMRV-YGALMWS 378 (394)
Q Consensus 349 ~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~ 378 (394)
+.++++++ |+. ++... |+++.+.
T Consensus 180 -~~~~iivs-----~~~-~~~~~~d~v~~~~ 203 (212)
T cd03274 180 -NAQFIVIS-----LRN-NMFELADRLVGIY 203 (212)
T ss_pred -CCEEEEEE-----CcH-HHHHhCCEEEEEE
Confidence 45667777 554 34444 7766554
No 459
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.18 E-value=2.1e-10 Score=98.83 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=69.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+.+... . ...|+.+..... .. +.+ .
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~--~--~~~~t~~~~~~~---------------~~----~~~-----~--------- 43 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL--V--TTIPTVGFNVEM---------------LQ----LEK-----H--------- 43 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc--c--cccCccCcceEE---------------EE----eCC-----c---------
Confidence 479999999999999999998763 1 112222110000 00 000 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++|+||... +..+...++.++|++++++|............++..+.+ .+.|++
T Consensus 44 -------~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii 105 (160)
T cd04156 44 -------LSLTVWDVGGQEK-----------MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVV 105 (160)
T ss_pred -------eEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEE
Confidence 1678999999732 111345568899999999999762212333333333321 468999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 106 lv~nK~Dl~~ 115 (160)
T cd04156 106 LLANKQDLPG 115 (160)
T ss_pred EEEECccccc
Confidence 9999999853
No 460
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.18 E-value=1.2e-10 Score=104.86 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=72.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|.+|+|||||++.+.+... .....|+++..... ..+.+.+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f---~~~~~pt~~~~~~~-----------------~~i~~~~~-------------- 47 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF---PEEYIPTEHRRLYR-----------------PAVVLSGR-------------- 47 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC---CcccCCccccccce-----------------eEEEECCE--------------
Confidence 589999999999999999998763 22224444322110 00001110
Q ss_pred cCCccccccceeecCCCCCch-hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh------cCCC
Q 016165 279 QMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR------GHDD 351 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsG-e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~------~~~~ 351 (394)
...+.++||||.... ...+-+ +.......+.++|++|+++|+...........+++.+. ..+.
T Consensus 48 ------~~~l~i~Dt~G~~~~~~~~~~e----~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~ 117 (198)
T cd04142 48 ------VYDLHILDVPNMQRYPGTAGQE----WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEP 117 (198)
T ss_pred ------EEEEEEEeCCCcccCCccchhH----HHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 015679999997430 000000 11123345689999999999987332333444444432 2467
Q ss_pred eEEEEEecCCccCH
Q 016165 352 KIRVVLNKADQVDT 365 (394)
Q Consensus 352 ~viiv~nK~Dl~~~ 365 (394)
|+++|.||+|+.+.
T Consensus 118 piiivgNK~Dl~~~ 131 (198)
T cd04142 118 PIVVVGNKRDQQRH 131 (198)
T ss_pred CEEEEEECcccccc
Confidence 99999999999543
No 461
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.18 E-value=2.2e-10 Score=99.53 Aligned_cols=115 Identities=19% Similarity=0.281 Sum_probs=73.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+++++|++|+|||||++.+.+... .....|+.+..... ..+.+.+. .
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~---~~~~~~t~~~~~~~-----------------~~~~~~~~----~--------- 50 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKI-----------------RTIELDGK----T--------- 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEE-----------------EEEEECCE----E---------
Confidence 689999999999999999998663 22222332221110 00000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++|+||... |..+...+++++|.+|+++|+++......+.+++..+.+ .+.|+++
T Consensus 51 -------~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~ii 112 (166)
T cd01869 51 -------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 112 (166)
T ss_pred -------EEEEEEECCCcHh-----------HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEE
Confidence 1678999999621 122556788999999999999873333444455555543 3579999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+..
T Consensus 113 v~nK~Dl~~ 121 (166)
T cd01869 113 VGNKCDLTD 121 (166)
T ss_pred EEEChhccc
Confidence 999999854
No 462
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.18 E-value=2.9e-10 Score=96.60 Aligned_cols=123 Identities=24% Similarity=0.370 Sum_probs=77.5
Q ss_pred EeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhhcCC
Q 016165 202 LLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMP 281 (394)
Q Consensus 202 IvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 281 (394)
|+|+.|||||||+|.|++... ...+..+.++....... ..+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~------------------ 43 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEV--AIVSPVPGTTTDPVEYV-----------------WELGP------------------ 43 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccc--cccCCCCCcEECCeEEE-----------------EEecC------------------
Confidence 589999999999999999774 33443433332211100 00000
Q ss_pred ccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCC
Q 016165 282 HSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (394)
Q Consensus 282 ~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~D 361 (394)
...+.++||||.......+.. +...++.++.++|++++++|+.... ......++......+.|+++|+||+|
T Consensus 44 ---~~~~~~~Dt~g~~~~~~~~~~----~~~~~~~~~~~~d~il~v~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 ---LGPVVLIDTPGIDEAGGLGRE----REELARRVLERADLILFVVDADLRA-DEEEEKLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred ---CCcEEEEECCCCCccccchhh----HHHHHHHHHHhCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCeEEEEEEccc
Confidence 127789999998772222211 0115677899999999999998732 22222235555556889999999999
Q ss_pred ccCHHHHH
Q 016165 362 QVDTQQLM 369 (394)
Q Consensus 362 l~~~~~~~ 369 (394)
+.......
T Consensus 116 ~~~~~~~~ 123 (163)
T cd00880 116 LLPEEEEE 123 (163)
T ss_pred cCChhhHH
Confidence 87655443
No 463
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.17 E-value=7.8e-10 Score=98.76 Aligned_cols=121 Identities=21% Similarity=0.331 Sum_probs=74.5
Q ss_pred ccEEEEeecCCCchhHHHHHHHhcc-CCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhh
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTS-YPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~-~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 275 (394)
.+.|+++|.+|||||||+|.|++.. . ..+++.+++++....+. + +
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~--~~~~~~~~~t~~~~~~~-------------------~-~------------ 69 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNL--ARTSKTPGRTQLINFFE-------------------V-N------------ 69 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCc--ccccCCCCceeEEEEEe-------------------c-C------------
Confidence 3489999999999999999999964 2 34444454444321100 0 0
Q ss_pred hhhcCCccccccceeecCCCCCc-----hhhhhhhcccChHHHHHHHhhc---CCEEEEEeCCCCCCchHHHHHHHHHHh
Q 016165 276 ECSQMPHSLLEHITLVDTPGVLS-----GEKQRTQRAYDFTGVTSWFAAK---CDLILLLFDPHKLDISDEFKRVITSLR 347 (394)
Q Consensus 276 ~~~~~~~~~l~~~~l~Dt~g~ls-----Ge~qrv~~~~~~~~iaral~~~---~dllLl~lD~~~~~~~~~~~~~l~~l~ 347 (394)
..+.++||||+.. .++.+. ..+...++.. .+++++++|... .......++.+.+.
T Consensus 70 ----------~~l~l~DtpG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~ 132 (196)
T PRK00454 70 ----------DKLRLVDLPGYGYAKVSKEEKEKW------QKLIEEYLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLK 132 (196)
T ss_pred ----------CeEEEeCCCCCCCcCCCchHHHHH------HHHHHHHHHhCccceEEEEEEecCC-CCCHHHHHHHHHHH
Confidence 1678999999743 112221 1233444443 467777888765 22333334455555
Q ss_pred cCCCeEEEEEecCCccCHHHH
Q 016165 348 GHDDKIRVVLNKADQVDTQQL 368 (394)
Q Consensus 348 ~~~~~viiv~nK~Dl~~~~~~ 368 (394)
..+.+++++.||+|+.+..+.
T Consensus 133 ~~~~~~iiv~nK~Dl~~~~~~ 153 (196)
T PRK00454 133 EYGIPVLIVLTKADKLKKGER 153 (196)
T ss_pred HcCCcEEEEEECcccCCHHHH
Confidence 567899999999998765443
No 464
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.17 E-value=8.6e-11 Score=109.01 Aligned_cols=122 Identities=23% Similarity=0.331 Sum_probs=82.1
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
-+++||-||||||||||+|+... ..|++.+.||-..- . |...++..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AK---pkVa~YaFTTL~P~------------i-----------G~v~yddf-------- 243 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAK---PKVAHYAFTTLRPH------------I-----------GTVNYDDF-------- 243 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccC---Ccccccceeeeccc------------c-----------ceeecccc--------
Confidence 68999999999999999999988 67877777764221 1 11111110
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCC---CchHHHHHHHHHHhc-----CC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL---DISDEFKRVITSLRG-----HD 350 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~---~~~~~~~~~l~~l~~-----~~ 350 (394)
..+.+.|.||+..|.-+.-...++|. .-+..++.+++++|.+.. ...+++..+..++.. ..
T Consensus 244 -------~q~tVADiPGiI~GAh~nkGlG~~FL----rHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~ 312 (366)
T KOG1489|consen 244 -------SQITVADIPGIIEGAHMNKGLGYKFL----RHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLAD 312 (366)
T ss_pred -------ceeEeccCccccccccccCcccHHHH----HHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhcc
Confidence 24678999999885433333233332 236889999999999874 444555555555532 25
Q ss_pred CeEEEEEecCCccCH
Q 016165 351 DKIRVVLNKADQVDT 365 (394)
Q Consensus 351 ~~viiv~nK~Dl~~~ 365 (394)
.|.++|.||+|+.+.
T Consensus 313 rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 313 RPALIVANKIDLPEA 327 (366)
T ss_pred CceEEEEeccCchhH
Confidence 689999999998533
No 465
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.17 E-value=2.8e-10 Score=98.00 Aligned_cols=111 Identities=19% Similarity=0.201 Sum_probs=70.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||++.+++... ... .+..+.... .+.+.+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~--~~t~~~~~~-------------------~~~~~~--------------- 42 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTT--IPTIGFNVE-------------------TVEYKN--------------- 42 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCC--CCCcCcceE-------------------EEEECC---------------
Confidence 489999999999999999998762 111 111110000 000011
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
..+.++|+||... |......++.++|++++++|+...........++..+. ..+.|++
T Consensus 43 -------~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii 104 (158)
T cd00878 43 -------VSFTVWDVGGQDK-----------IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLL 104 (158)
T ss_pred -------EEEEEEECCCChh-----------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE
Confidence 1678999999743 11145667899999999999987222223333343332 2467999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
++.||+|+...
T Consensus 105 iv~nK~D~~~~ 115 (158)
T cd00878 105 IFANKQDLPGA 115 (158)
T ss_pred EEeeccCCccc
Confidence 99999998653
No 466
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.17 E-value=1.6e-10 Score=98.52 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=72.1
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||+|.+.+... .....+..+....... +...+ ..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~----~~--------- 48 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKF---DENYKSTIGVDFKSKT-----------------IEIDG----KT--------- 48 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC---CCccCCceeeeeEEEE-----------------EEECC----EE---------
Confidence 589999999999999999998874 2111222221111000 00000 00
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++|+||... |......++.++|++++++|+...........++..+.. .+.|+++
T Consensus 49 -------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 110 (159)
T cd00154 49 -------VKLQIWDTAGQER-----------FRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIIL 110 (159)
T ss_pred -------EEEEEEecCChHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 1667999999732 122556778999999999999762223334445555544 3589999
Q ss_pred EEecCCcc
Q 016165 356 VLNKADQV 363 (394)
Q Consensus 356 v~nK~Dl~ 363 (394)
+.||+|+.
T Consensus 111 v~nK~D~~ 118 (159)
T cd00154 111 VGNKIDLE 118 (159)
T ss_pred EEEccccc
Confidence 99999985
No 467
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.17 E-value=1.8e-10 Score=104.48 Aligned_cols=130 Identities=25% Similarity=0.282 Sum_probs=74.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCC--------Cccccee----EEEEecCcccccCCceeeecc-CCCCCccc
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP--------EPTTDRF----VVVMSGVDDRSIPGNTVAVQA-DMPFSGLT 265 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~--------~p~t~r~----~i~~~~~~~~~~~~~~~~~~~-~~~~~g~~ 265 (394)
+|+|+|++|||||||++.|++... .+.+. .+.+++. ...++....+.-.|+++.... .+.+.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~-- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSK--SIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK-- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--
Confidence 489999999999999999998773 33321 1122221 122233333333444442211 111111
Q ss_pred ccccccchhhhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHH
Q 016165 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITS 345 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~ 345 (394)
..+.++||||+.. |..-....+..+|++|+++|+.. +...+.......
T Consensus 77 --------------------~~~~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~-~~~~~~~~~~~~ 124 (208)
T cd04166 77 --------------------RKFIIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARK-GVLEQTRRHSYI 124 (208)
T ss_pred --------------------ceEEEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCC-CccHhHHHHHHH
Confidence 2778999999732 10112234689999999999976 333333333333
Q ss_pred HhcCCC-eEEEEEecCCccC
Q 016165 346 LRGHDD-KIRVVLNKADQVD 364 (394)
Q Consensus 346 l~~~~~-~viiv~nK~Dl~~ 364 (394)
+...+. ++|+|+||+|+.+
T Consensus 125 ~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 125 LSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred HHHcCCCcEEEEEEchhccc
Confidence 333443 5788999999864
No 468
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.16 E-value=2.9e-10 Score=99.07 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=72.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|+|||||++.+.+... .....|+.+..... ..+.+.+. .
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~~f---~~~~~~t~~~~~~~-----------------~~~~~~~~----~--------- 51 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSEDSF---NPSFISTIGIDFKI-----------------RTIELDGK----K--------- 51 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhCcC---CcccccCccceEEE-----------------EEEEECCE----E---------
Confidence 799999999999999999998763 22222222211100 00001110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
-.+.++||+|... |..+...++.++|++++++|+........+.+++..+.. .+.|+++
T Consensus 52 -------~~l~l~D~~g~~~-----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ii 113 (167)
T cd01867 52 -------IKLQIWDTAGQER-----------FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERML 113 (167)
T ss_pred -------EEEEEEeCCchHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEE
Confidence 1678999999632 111445678999999999999763333344455554443 4679999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 114 v~nK~Dl~~ 122 (167)
T cd01867 114 VGNKCDMEE 122 (167)
T ss_pred EEECccccc
Confidence 999999864
No 469
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.16 E-value=1.9e-10 Score=103.02 Aligned_cols=66 Identities=32% Similarity=0.371 Sum_probs=49.3
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.+.++||||+.. |......++.++|++++++|+.. +.......++..+...+.|+++|.||+|+.+
T Consensus 66 ~~~l~DtpG~~~-----------~~~~~~~~~~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 66 KINIVDTPGHAD-----------FGGEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHHHhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 678999999843 22255667899999999999976 3334444556666566889999999999853
No 470
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.16 E-value=1.6e-10 Score=100.08 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=71.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|+|||||+|.+++... .....|..+.+... .. +.+.+. .
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~---~~~~~~t~~~~~~~-----------~~------~~~~~~----~--------- 48 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRF---VSKYLPTIGIDYGV-----------KK------VSVRNK----E--------- 48 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCCCCccceeEEE-----------EE------EEECCe----E---------
Confidence 589999999999999999999873 22222322211100 00 000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc--------CC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--------HD 350 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~--------~~ 350 (394)
..+.++||+|... |..+...+..+++++|+++|.+..........++..+.+ .+
T Consensus 49 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 110 (168)
T cd04119 49 -------VRVNFFDLSGHPE-----------YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMEN 110 (168)
T ss_pred -------EEEEEEECCccHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCC
Confidence 1678999999722 112455678999999999999863222334445544432 34
Q ss_pred CeEEEEEecCCcc
Q 016165 351 DKIRVVLNKADQV 363 (394)
Q Consensus 351 ~~viiv~nK~Dl~ 363 (394)
.|+++|.||+|+.
T Consensus 111 ~piilv~nK~Dl~ 123 (168)
T cd04119 111 IVVVVCANKIDLT 123 (168)
T ss_pred ceEEEEEEchhcc
Confidence 7899999999985
No 471
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.16 E-value=2.2e-10 Score=105.93 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=50.8
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.+.++||||+.. |...+...++.+|.+++++|+.. +.......+++.+.+.+.|++++.||+|+..
T Consensus 65 ~i~liDTPG~~~-----------f~~~~~~~l~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 65 KVNLIDTPGHMD-----------FIAEVERSLSVLDGAILVISAVE-GVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred EEEEEeCCCccc-----------hHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 778999999954 11234456788999999999986 4455556677777677899999999999864
No 472
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.16 E-value=2e-10 Score=99.24 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=72.1
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+++++|++|||||||+|.+++... .....|..+...... . +.+.+. .
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~---------------~--v~~~~~----~--------- 49 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEF---SENQESTIGAAFLTQ---------------T--VNLDDT----T--------- 49 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCCccceeEEEE---------------E--EEECCE----E---------
Confidence 689999999999999999999874 212223222211100 0 000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++|+||... |....+.+++++|++++++|+...........++..+.. .+.|+++
T Consensus 50 -------~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiv 111 (163)
T cd01860 50 -------VKFEIWDTAGQER-----------YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIAL 111 (163)
T ss_pred -------EEEEEEeCCchHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 1678999999621 112455678899999999999863223334455555543 3468999
Q ss_pred EEecCCcc
Q 016165 356 VLNKADQV 363 (394)
Q Consensus 356 v~nK~Dl~ 363 (394)
+.||+|+.
T Consensus 112 v~nK~D~~ 119 (163)
T cd01860 112 VGNKADLE 119 (163)
T ss_pred EEECcccc
Confidence 99999986
No 473
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.16 E-value=3.4e-10 Score=99.48 Aligned_cols=111 Identities=20% Similarity=0.239 Sum_probs=69.1
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|++|+|||||++.+++... .. ..|+.+..... +.+..
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~--~~--~~~t~~~~~~~-------------------~~~~~-------------- 58 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEV--VH--TSPTIGSNVEE-------------------IVYKN-------------- 58 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CC--cCCccccceEE-------------------EEECC--------------
Confidence 3799999999999999999987553 11 12222111000 00011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++|+||... |.......+.++|++++++|.+.........+.+..+.. .+.|+
T Consensus 59 --------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~ 119 (174)
T cd04153 59 --------IRFLMWDIGGQES-----------LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVL 119 (174)
T ss_pred --------eEEEEEECCCCHH-----------HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCE
Confidence 1678999999843 111344567899999999999862212222333333322 25799
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
+++.||+|+.+
T Consensus 120 viv~NK~Dl~~ 130 (174)
T cd04153 120 LVLANKQDLKG 130 (174)
T ss_pred EEEEECCCCCC
Confidence 99999999864
No 474
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.16 E-value=3.7e-10 Score=97.76 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=70.1
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||++.+..... . ...|+.+..... + ....
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~--~--~~~pt~g~~~~~-------------~------~~~~--------------- 43 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIGFNVET-------------V------EYKN--------------- 43 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--c--ccCCCCCcceEE-------------E------EECC---------------
Confidence 589999999999999999965442 1 123332211100 0 0001
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++|+||... |..+...+++++|++|+++|.+......+..+++..+.. ...|++
T Consensus 44 -------~~~~l~D~~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii 105 (159)
T cd04150 44 -------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLL 105 (159)
T ss_pred -------EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEE
Confidence 1678999999832 112556778999999999999762222333444444422 247999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
++.||+|+.+
T Consensus 106 lv~NK~Dl~~ 115 (159)
T cd04150 106 VFANKQDLPN 115 (159)
T ss_pred EEEECCCCCC
Confidence 9999999864
No 475
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.16 E-value=2.8e-10 Score=98.96 Aligned_cols=116 Identities=20% Similarity=0.250 Sum_probs=73.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||+|.+.+... .....|..+..... .++. .++ ..
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~-----------~~~~------~~~----~~--------- 49 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSF---TSAFVSTVGIDFKV-----------KTVF------RND----KR--------- 49 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEE-----------EEEE------ECC----EE---------
Confidence 689999999999999999998763 11112222211000 0000 000 00
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++||+|... |..+...++++++++++++|.........+.++++.+.. ...|+++
T Consensus 50 -------~~~~l~Dt~g~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 111 (165)
T cd01865 50 -------VKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVIL 111 (165)
T ss_pred -------EEEEEEECCChHH-----------HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 1678999999732 112456678999999999999773334445566666643 3568999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 112 v~nK~Dl~~~ 121 (165)
T cd01865 112 VGNKCDMEDE 121 (165)
T ss_pred EEECcccCcc
Confidence 9999998543
No 476
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.16 E-value=2.6e-10 Score=98.68 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=69.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||+|.+.+... .....|..+ .... ....+.+. .
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~---~~~~~~t~~-~~~~-----------------~~~~~~~~----~--------- 47 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF---VDDYDPTIE-DSYR-----------------KQIEIDGE----V--------- 47 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC---CcccCCchh-hhEE-----------------EEEEECCE----E---------
Confidence 589999999999999999998663 111122111 1000 00000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
..+.++||||... |..+.+.++.+++.+++++|............+...+. ..+.|++
T Consensus 48 -------~~l~i~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 109 (164)
T smart00173 48 -------CLLDILDTAGQEE-----------FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV 109 (164)
T ss_pred -------EEEEEEECCCccc-----------chHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1667899999743 11244567889999999999976222233333333332 2367999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 110 ~v~nK~Dl~~ 119 (164)
T smart00173 110 LVGNKCDLES 119 (164)
T ss_pred EEEECccccc
Confidence 9999999854
No 477
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.16 E-value=2.4e-10 Score=100.71 Aligned_cols=67 Identities=28% Similarity=0.326 Sum_probs=47.5
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEEEEEecCCc
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIRVVLNKADQ 362 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~viiv~nK~Dl 362 (394)
.+.++||||... |..+...++.++|++++++|+........+..++..+.. .+.|+++|.||+|+
T Consensus 64 ~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 132 (180)
T cd04127 64 HLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL 132 (180)
T ss_pred EEEEEeCCChHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence 578999999621 122556778999999999999873333444455555543 25689999999998
Q ss_pred cC
Q 016165 363 VD 364 (394)
Q Consensus 363 ~~ 364 (394)
.+
T Consensus 133 ~~ 134 (180)
T cd04127 133 ED 134 (180)
T ss_pred hh
Confidence 54
No 478
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.16 E-value=1.9e-10 Score=100.58 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=72.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||++.+++... .....+..+.... ...+.+.+. .
T Consensus 4 ki~vvG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~-----------------~~~~~~~~~----~--------- 50 (170)
T cd04115 4 KIIVIGDSNVGKTCLTYRFCAGRF---PERTEATIGVDFR-----------------ERTVEIDGE----R--------- 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCccccceeEEEE-----------------EEEEEECCe----E---------
Confidence 699999999999999999988663 1111121111000 000001110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||+|.. .-+-. +...+.+++|++++++|+...........++..+.. .+.|++
T Consensus 51 -------~~~~i~Dt~G~~---~~~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 113 (170)
T cd04115 51 -------IKVQLWDTAGQE---RFRKS-------MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRI 113 (170)
T ss_pred -------EEEEEEeCCChH---HHHHh-------hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEE
Confidence 167899999973 21111 455678999999999999873334444555555433 357999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+...
T Consensus 114 iv~nK~Dl~~~ 124 (170)
T cd04115 114 LVGNKCDLREQ 124 (170)
T ss_pred EEEECccchhh
Confidence 99999998543
No 479
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.15 E-value=5.5e-11 Score=110.31 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=48.5
Q ss_pred CCCCCc-hhhhhhhcccChHHHHHHHhh----cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCc
Q 016165 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAA----KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQ 362 (394)
Q Consensus 293 t~g~ls-Ge~qrv~~~~~~~~iaral~~----~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl 362 (394)
.+..+| ||+||+. +|++++. +|+++|+ .+|+.. ...+.+.++++.+ +.. ++++|
T Consensus 155 ~~~~lS~G~~~r~~-------la~~l~~~~~~~~~illlDEp~~~ld~~~---~~~~~~~l~~~~~-~~~-ii~~~---- 218 (243)
T cd03272 155 EMQQLSGGQKSLVA-------LALIFAIQKCDPAPFYLFDEIDAALDAQY---RTAVANMIKELSD-GAQ-FITTT---- 218 (243)
T ss_pred cccccCHHHHHHHH-------HHHHHHHhccCCCCEEEEECCccCCCHHH---HHHHHHHHHHHhC-CCE-EEEEe----
Confidence 567788 9999999 9999973 5899999 777765 6777788888755 444 44443
Q ss_pred cCHHHHHHH-HhHhhhc
Q 016165 363 VDTQQLMRV-YGALMWS 378 (394)
Q Consensus 363 ~~~~~~~~~-~~~~~~~ 378 (394)
|..+ +..+ ++++.+.
T Consensus 219 h~~~-~~~~~d~i~~l~ 234 (243)
T cd03272 219 FRPE-LLEVADKFYGVK 234 (243)
T ss_pred cCHH-HHhhCCEEEEEE
Confidence 5544 3444 6665554
No 480
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.15 E-value=3.5e-10 Score=101.89 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=71.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCC-cccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFS-GLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~ 277 (394)
+|+++|++|||||||++.+.+... .....|+.+.+... ..+.+. +. .
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~---~~~~~~t~~~d~~~-----------------~~v~~~~~~----~-------- 49 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF---SQHYKATIGVDFAL-----------------KVIEWDPNT----V-------- 49 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeEEEEE-----------------EEEEECCCC----E--------
Confidence 589999999999999999998652 22222322221100 000000 10 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh-------cCC
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR-------GHD 350 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~-------~~~ 350 (394)
-.+.++||||... |..+.+.++++++++|+++|.+..........++..+. ..+
T Consensus 50 --------~~l~l~Dt~G~~~-----------~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~ 110 (201)
T cd04107 50 --------VRLQLWDIAGQER-----------FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEP 110 (201)
T ss_pred --------EEEEEEECCCchh-----------hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 1568999999722 22256778999999999999987333333334444332 135
Q ss_pred CeEEEEEecCCcc
Q 016165 351 DKIRVVLNKADQV 363 (394)
Q Consensus 351 ~~viiv~nK~Dl~ 363 (394)
.|+++|.||+|+.
T Consensus 111 ~piilv~NK~Dl~ 123 (201)
T cd04107 111 IPCLLLANKCDLK 123 (201)
T ss_pred CcEEEEEECCCcc
Confidence 6999999999985
No 481
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.15 E-value=3.9e-11 Score=111.97 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=49.9
Q ss_pred CCCCCc-hhhhhhhcccChHHHHHHHh----hcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCc
Q 016165 293 TPGVLS-GEKQRTQRAYDFTGVTSWFA----AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQ 362 (394)
Q Consensus 293 t~g~ls-Ge~qrv~~~~~~~~iaral~----~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl 362 (394)
.+..+| ||+|+++ +|++++ ..|+++|+ .+|+.. ...+.++++++.+ +.++|+++
T Consensus 163 ~~~~lS~G~~qr~~-------la~al~~~~~~~~~illlDEPt~~ld~~~---~~~~~~~l~~~~~-g~~ii~iS----- 226 (251)
T cd03273 163 SLTELSGGQRSLVA-------LSLILALLLFKPAPMYILDEVDAALDLSH---TQNIGRMIKTHFK-GSQFIVVS----- 226 (251)
T ss_pred cccccCHHHHHHHH-------HHHHHHHhhccCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHcC-CCEEEEEE-----
Confidence 577788 9999999 999987 57899998 677665 6777788887754 67788888
Q ss_pred cCHHHHHHHHhHhhh
Q 016165 363 VDTQQLMRVYGALMW 377 (394)
Q Consensus 363 ~~~~~~~~~~~~~~~ 377 (394)
|..+.....|+++.+
T Consensus 227 H~~~~~~~~d~v~~~ 241 (251)
T cd03273 227 LKEGMFNNANVLFRT 241 (251)
T ss_pred CCHHHHHhCCEEEEE
Confidence 554443333665443
No 482
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.15 E-value=4e-10 Score=102.65 Aligned_cols=116 Identities=14% Similarity=0.170 Sum_probs=72.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||+|.+.+... .....|+.+.+... ..+.+.+- ..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~---~~~~~~T~~~d~~~-----------------~~i~~~~~---~~--------- 49 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF---GKSYKQTIGLDFFS-----------------KRVTLPGN---LN--------- 49 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC---CCCCCCceeEEEEE-----------------EEEEeCCC---CE---------
Confidence 589999999999999999998652 22222333221110 00000000 00
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc------CCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~------~~~~ 352 (394)
..+.++||+|... |..+...+++++|++|+++|.+.......+.+++..+.+ .+.|
T Consensus 50 -------~~~~i~Dt~G~~~-----------~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~p 111 (215)
T cd04109 50 -------VTLQVWDIGGQSI-----------GGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPL 111 (215)
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCce
Confidence 1678999999622 112556778999999999999873333444445554433 2347
Q ss_pred EEEEEecCCccC
Q 016165 353 IRVVLNKADQVD 364 (394)
Q Consensus 353 viiv~nK~Dl~~ 364 (394)
+++|.||+|+.+
T Consensus 112 iilVgNK~DL~~ 123 (215)
T cd04109 112 VVLVGNKTDLEH 123 (215)
T ss_pred EEEEEECccccc
Confidence 899999999854
No 483
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.14 E-value=3.6e-10 Score=97.93 Aligned_cols=114 Identities=17% Similarity=0.278 Sum_probs=70.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||++.++.... .....|+++. ... ..+.+.+. .
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~---~~~~~~t~~~-~~~-----------------~~~~~~~~----~--------- 48 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIED-SYR-----------------KQVEVDGQ----Q--------- 48 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CcccCCcchh-eEE-----------------EEEEECCE----E---------
Confidence 689999999999999999985442 1111222221 110 00001110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
..+.++||||... |..+...+++++|.+++++|...........+++..+. ..+.|++
T Consensus 49 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 110 (164)
T cd04175 49 -------CMLEILDTAGTEQ-----------FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 110 (164)
T ss_pred -------EEEEEEECCCccc-----------chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1567999999732 22255667899999999999876222333444444443 2367999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 111 lv~nK~Dl~~ 120 (164)
T cd04175 111 LVGNKCDLED 120 (164)
T ss_pred EEEECCcchh
Confidence 9999999854
No 484
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.14 E-value=1.8e-10 Score=108.27 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=48.4
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.+.++||||+.. |...+...+..+|.+++++|+.. +.......+++.+...+.|++++.||+|+..
T Consensus 72 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~~IlVvda~~-g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 72 VINLLDTPGHED-----------FSEDTYRTLTAVDSAVMVIDAAK-GVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred EEEEEECCCchH-----------HHHHHHHHHHHCCEEEEEEECCC-CccHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence 788999999843 11123445689999999999976 4444455566666666889999999999754
No 485
>COG2262 HflX GTPases [General function prediction only]
Probab=99.14 E-value=2.2e-10 Score=110.24 Aligned_cols=122 Identities=25% Similarity=0.397 Sum_probs=77.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCC--CCCc-CCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSK 274 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~--~~~v-s~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 274 (394)
+.|+|+|-.|||||||+|.|++.... +... +-.|+|.+..+. +|
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~----------------------~g----------- 239 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG----------------------DG----------- 239 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC----------------------CC-----------
Confidence 38999999999999999999987732 1111 112222221110 01
Q ss_pred hhhhcCCccccccceeecCCCCCch-hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHH---HHHHHHHhcCC
Q 016165 275 FECSQMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF---KRVITSLRGHD 350 (394)
Q Consensus 275 ~~~~~~~~~~l~~~~l~Dt~g~lsG-e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~---~~~l~~l~~~~ 350 (394)
..+-+.||.|+.+. -..-|+ ++ .-+..-+.+||++|.++|++++....++ .++|+++....
T Consensus 240 -----------~~vlLtDTVGFI~~LP~~LV~-AF---ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~ 304 (411)
T COG2262 240 -----------RKVLLTDTVGFIRDLPHPLVE-AF---KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE 304 (411)
T ss_pred -----------ceEEEecCccCcccCChHHHH-HH---HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC
Confidence 16678899999872 112222 10 0223457899999999999985544443 35566665567
Q ss_pred CeEEEEEecCCccCHHH
Q 016165 351 DKIRVVLNKADQVDTQQ 367 (394)
Q Consensus 351 ~~viiv~nK~Dl~~~~~ 367 (394)
.|+|+|.||+|+.....
T Consensus 305 ~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 305 IPIILVLNKIDLLEDEE 321 (411)
T ss_pred CCEEEEEecccccCchh
Confidence 89999999999765443
No 486
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.14 E-value=4.3e-10 Score=100.81 Aligned_cols=128 Identities=22% Similarity=0.197 Sum_probs=77.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeecc-CCCCCcccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~ 277 (394)
.++++|..++|||||++.|++... ..+.....+. ..++....+...|.+..... .+...+
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~---~~g~~~~~~~--~~~d~~~~E~~rg~Ti~~~~~~~~~~~-------------- 64 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLA---KKGGAKFKKY--DEIDKAPEEKARGITINTAHVEYETAN-------------- 64 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---hccccccccc--ccccCChhhhhcCccEEeeeeEecCCC--------------
Confidence 589999999999999999997631 1110000000 01111112223344332110 010111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCe-EEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVV 356 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~-viiv 356 (394)
..+.++||||+.. .+. -+...+..+|++++++|+.. +...+..+++..+.+.+.+ +|++
T Consensus 65 --------~~i~~iDtPG~~~----~~~-------~~~~~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~~~iIvv 124 (195)
T cd01884 65 --------RHYAHVDCPGHAD----YIK-------NMITGAAQMDGAILVVSATD-GPMPQTREHLLLARQVGVPYIVVF 124 (195)
T ss_pred --------eEEEEEECcCHHH----HHH-------HHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCcEEEE
Confidence 2678999999842 111 33445678999999999975 5566677778777777876 7889
Q ss_pred EecCCccCH
Q 016165 357 LNKADQVDT 365 (394)
Q Consensus 357 ~nK~Dl~~~ 365 (394)
+||+|+.+.
T Consensus 125 iNK~D~~~~ 133 (195)
T cd01884 125 LNKADMVDD 133 (195)
T ss_pred EeCCCCCCc
Confidence 999998643
No 487
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.14 E-value=2.1e-10 Score=102.44 Aligned_cols=114 Identities=25% Similarity=0.314 Sum_probs=71.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCC-CcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP-EPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~-~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+|+++|++|||||||++.+.+... ..+. .++++..... ..+.+.+. .
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~---~~~~~~~t~~~~~~~-----------------~~~~~~~~----~-------- 49 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAF---LNGNFIATVGIDFRN-----------------KVVTVDGV----K-------- 49 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CccCcCCcccceeEE-----------------EEEEECCE----E--------
Confidence 589999999999999999988762 2221 2222211100 00000110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vi 354 (394)
-.+.++||||... |..+...++.++|++|+++|.........+..++..+. ..+.|++
T Consensus 50 --------~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii 110 (191)
T cd04112 50 --------VKLQIWDTAGQER-----------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIM 110 (191)
T ss_pred --------EEEEEEeCCCcHH-----------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 1678999999622 11244567899999999999987332333444554443 3467999
Q ss_pred EEEecCCcc
Q 016165 355 VVLNKADQV 363 (394)
Q Consensus 355 iv~nK~Dl~ 363 (394)
+|.||+|+.
T Consensus 111 iv~NK~Dl~ 119 (191)
T cd04112 111 LLGNKADMS 119 (191)
T ss_pred EEEEcccch
Confidence 999999985
No 488
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.13 E-value=4.9e-10 Score=98.64 Aligned_cols=111 Identities=21% Similarity=0.248 Sum_probs=71.6
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|++|+|||||++.+..... ....|+.+..... ..+..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~----~~~~~t~~~~~~~-------------------~~~~~-------------- 56 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES----VTTIPTIGFNVET-------------------VTYKN-------------- 56 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC----CCcCCccccceEE-------------------EEECC--------------
Confidence 3799999999999999999953331 1122332221100 00011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++||+|... |..+...++.++|++|+++|.+......+..+++..+.. .+.|+
T Consensus 57 --------~~l~l~D~~G~~~-----------~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pi 117 (175)
T smart00177 57 --------ISFTVWDVGGQDK-----------IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVI 117 (175)
T ss_pred --------EEEEEEECCCChh-----------hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcE
Confidence 1678999999743 122456678999999999999863333444455554432 25799
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 118 ilv~NK~Dl~~ 128 (175)
T smart00177 118 LVFANKQDLPD 128 (175)
T ss_pred EEEEeCcCccc
Confidence 99999999864
No 489
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.13 E-value=3.8e-10 Score=99.22 Aligned_cols=66 Identities=27% Similarity=0.324 Sum_probs=46.5
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.+.++||||+.. |....+..+..+|++|+++|+.. +...+....+..+...+.++++|.||+|+.+
T Consensus 68 ~~~l~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 68 LLNLIDTPGHVD-----------FSYEVSRSLAACEGALLLVDATQ-GVEAQTLANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred EEEEEECCCChh-----------hHHHHHHHHHhcCeEEEEEECCC-CccHhhHHHHHHHHHcCCCEEEEEECCCCCc
Confidence 577999999843 12244566889999999999976 2223333444444456789999999999854
No 490
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.13 E-value=5e-10 Score=97.58 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=68.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||+|.+.+... .....+..+.+... ..+...+. .
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~---~~~~~~t~~~~~~~-----------------~~~~~~~~----~--------- 48 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLT-----------------KEVTVDDK----L--------- 48 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CcCcCCccceEEEE-----------------EEEEECCE----E---------
Confidence 589999999999999999988762 21112222211110 00000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH----h---cCCC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----R---GHDD 351 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l----~---~~~~ 351 (394)
..+.++|+||... |..+...+++++|.+|+++|+...........+...+ . ..+.
T Consensus 49 -------~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (172)
T cd01862 49 -------VTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENF 110 (172)
T ss_pred -------EEEEEEeCCChHH-----------HHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 1567899999732 1225567789999999999997621112222333222 1 1267
Q ss_pred eEEEEEecCCccC
Q 016165 352 KIRVVLNKADQVD 364 (394)
Q Consensus 352 ~viiv~nK~Dl~~ 364 (394)
|+++|.||+|+.+
T Consensus 111 p~ilv~nK~Dl~~ 123 (172)
T cd01862 111 PFVVLGNKIDLEE 123 (172)
T ss_pred eEEEEEECccccc
Confidence 9999999999963
No 491
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.13 E-value=4.3e-10 Score=105.67 Aligned_cols=128 Identities=23% Similarity=0.322 Sum_probs=89.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
=|++||-||||||||++.++.-. ..+..+|.||.... ..++.. ..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak---PKIadYpFTTL~Pn------------LGvV~~----~~~--------------- 206 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK---PKIADYPFTTLVPN------------LGVVRV----DGG--------------- 206 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC---CcccCCccccccCc------------ccEEEe----cCC---------------
Confidence 58999999999999999999988 78888888876321 111100 000
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCC---chHHHHHHHHHHhc-----CC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD---ISDEFKRVITSLRG-----HD 350 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~---~~~~~~~~l~~l~~-----~~ 350 (394)
+.|.+.|-||+..|.-+++....+|. .-+.++.+++.++|.+..+ ..+....+..+|.+ .+
T Consensus 207 -------~sfv~ADIPGLIEGAs~G~GLG~~FL----rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~ 275 (369)
T COG0536 207 -------ESFVVADIPGLIEGASEGVGLGLRFL----RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAE 275 (369)
T ss_pred -------CcEEEecCcccccccccCCCccHHHH----HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhcc
Confidence 36889999999998777777555553 2378899999999997622 24444455555544 26
Q ss_pred CeEEEEEecCCcc-CHHHHHHH
Q 016165 351 DKIRVVLNKADQV-DTQQLMRV 371 (394)
Q Consensus 351 ~~viiv~nK~Dl~-~~~~~~~~ 371 (394)
++.++|.||+|+. +.+++...
T Consensus 276 K~~ivv~NKiD~~~~~e~~~~~ 297 (369)
T COG0536 276 KPRIVVLNKIDLPLDEEELEEL 297 (369)
T ss_pred CceEEEEeccCCCcCHHHHHHH
Confidence 7899999999954 44444443
No 492
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.13 E-value=5.6e-10 Score=97.60 Aligned_cols=110 Identities=21% Similarity=0.282 Sum_probs=71.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||++.+.+... ....|+.+..... +.+.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~----~~~~~T~~~~~~~-------------------~~~~~--------------- 42 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF----MQPIPTIGFNVET-------------------VEYKN--------------- 42 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC----CCcCCcCceeEEE-------------------EEECC---------------
Confidence 478999999999999999998652 1122322211100 00011
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... +..+...++.++|.+++++|.+......+...++..+.. .+.|++
T Consensus 43 -------~~i~l~Dt~G~~~-----------~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~pii 104 (169)
T cd04158 43 -------LKFTIWDVGGKHK-----------LRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLL 104 (169)
T ss_pred -------EEEEEEECCCChh-----------cchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEE
Confidence 1678999999742 111455678999999999999763223344455554432 247999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
++.||+|+.+
T Consensus 105 lv~NK~Dl~~ 114 (169)
T cd04158 105 IFANKQDVAG 114 (169)
T ss_pred EEEeCcCccc
Confidence 9999999864
No 493
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.13 E-value=2.4e-10 Score=103.10 Aligned_cols=117 Identities=19% Similarity=0.319 Sum_probs=74.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|..|+|||||++.+..... .....|+.+..... ..+.+.+. .
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f---~~~~~~Ti~~~~~~-----------------~~i~~~~~----~--------- 48 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF---CEACKSGVGVDFKI-----------------KTVELRGK----K--------- 48 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC---CCcCCCcceeEEEE-----------------EEEEECCE----E---------
Confidence 488999999999999999987552 11112222211100 00001110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++||+|.. + |..+.+.+++++|++|+++|.+.....+.+..++..+.. .+.|+++
T Consensus 49 -------v~l~iwDtaGqe---~--------~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piil 110 (202)
T cd04120 49 -------IRLQIWDTAGQE---R--------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 110 (202)
T ss_pred -------EEEEEEeCCCch---h--------hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 167899999972 2 223667889999999999999874444444455554432 4679999
Q ss_pred EEecCCccCHH
Q 016165 356 VLNKADQVDTQ 366 (394)
Q Consensus 356 v~nK~Dl~~~~ 366 (394)
|.||+|+.+..
T Consensus 111 VgNK~DL~~~~ 121 (202)
T cd04120 111 VGNKLDCETDR 121 (202)
T ss_pred EEECccccccc
Confidence 99999986533
No 494
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.12 E-value=7e-10 Score=98.39 Aligned_cols=114 Identities=19% Similarity=0.257 Sum_probs=70.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCC-CCCcccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADM-PFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 277 (394)
+|+++|.+|||||||++.+++... +...|+.+-.... ..... ...+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~----~~~~~t~~~~~~~---------------~~~~~~~~~~-------------- 51 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEF----VNTVPTKGFNTEK---------------IKVSLGNSKG-------------- 51 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc----CCcCCccccceeE---------------EEeeccCCCc--------------
Confidence 799999999999999999987653 1223322211000 00000 0011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH----hcCCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l----~~~~~~v 353 (394)
..+.++||||... |..+...++.++|++++++|++..........++..+ ...+.|+
T Consensus 52 --------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~ 112 (183)
T cd04152 52 --------ITFHFWDVGGQEK-----------LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPV 112 (183)
T ss_pred --------eEEEEEECCCcHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcE
Confidence 1678999999732 1124566789999999999997621122223333333 2246899
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 113 iiv~NK~D~~~ 123 (183)
T cd04152 113 LVLANKQDLPN 123 (183)
T ss_pred EEEEECcCccc
Confidence 99999999863
No 495
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.12 E-value=2.9e-10 Score=101.43 Aligned_cols=115 Identities=19% Similarity=0.284 Sum_probs=71.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCC-CcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP-EPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~-~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+|+++|++|+|||||++.+++... ..+. .|+.+..... ..+.+++. .
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~---~~~~~~~t~~~~~~~-----------------~~~~~~~~----~-------- 49 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRF---LVGPYQNTIGAAFVA-----------------KRMVVGER----V-------- 49 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCc---CCcCcccceeeEEEE-----------------EEEEECCE----E--------
Confidence 589999999999999999998662 2211 1211111100 00001110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcC--CCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--DDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~--~~~vii 355 (394)
..+.++|++|... . ..+.+.++.++|++|+++|.........+..+++.+... +.|+++
T Consensus 50 --------~~l~i~D~~G~~~-----~------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piil 110 (193)
T cd04118 50 --------VTLGIWDTAGSER-----Y------EAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYL 110 (193)
T ss_pred --------EEEEEEECCCchh-----h------hhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 1567999999732 1 113455678999999999997733333445566666443 679999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 111 v~nK~Dl~~ 119 (193)
T cd04118 111 CGTKSDLIE 119 (193)
T ss_pred EEEcccccc
Confidence 999999853
No 496
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.12 E-value=6.1e-10 Score=98.68 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=72.1
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|..|||||||++.+..... ....|+.+..... +.+.+.
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~~~~----~~~~pt~g~~~~~-------------------~~~~~~-------------- 61 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVET-------------------VEYKNI-------------- 61 (181)
T ss_pred EEEEECCCCCCHHHHHHHHccCCC----ccccCCcceeEEE-------------------EEECCE--------------
Confidence 799999999999999999975442 1222333221100 001111
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
.+.++|+||... |..+...++.++|++|+++|.+......+..+.+..+.. .+.|++
T Consensus 62 --------~~~i~D~~Gq~~-----------~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pii 122 (181)
T PLN00223 62 --------SFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122 (181)
T ss_pred --------EEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEE
Confidence 678999999732 112556788999999999999873222333334444422 357999
Q ss_pred EEEecCCccCHH
Q 016165 355 VVLNKADQVDTQ 366 (394)
Q Consensus 355 iv~nK~Dl~~~~ 366 (394)
++.||+|+.+..
T Consensus 123 lv~NK~Dl~~~~ 134 (181)
T PLN00223 123 VFANKQDLPNAM 134 (181)
T ss_pred EEEECCCCCCCC
Confidence 999999987543
No 497
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.12 E-value=4.9e-10 Score=96.98 Aligned_cols=113 Identities=16% Similarity=0.263 Sum_probs=70.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|+|||||++.++.... .....|+.+..... .+.+.+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~-------------- 47 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTF---IEKYDPTIEDFYRK------------------EIEVDSS-------------- 47 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCCchhheEEE------------------EEEECCE--------------
Confidence 699999999999999999887653 11111211110000 0000110
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
...+.++||||... |..+...++.++|.+++++|..+.....+...++..+.+ .+.|++
T Consensus 48 ------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv 110 (163)
T cd04176 48 ------PSVLEILDTAGTEQ-----------FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110 (163)
T ss_pred ------EEEEEEEECCCccc-----------ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 01567899999732 122455678999999999999873223344555544433 367999
Q ss_pred EEEecCCcc
Q 016165 355 VVLNKADQV 363 (394)
Q Consensus 355 iv~nK~Dl~ 363 (394)
+|.||+|+.
T Consensus 111 iv~nK~Dl~ 119 (163)
T cd04176 111 LVGNKVDLE 119 (163)
T ss_pred EEEECccch
Confidence 999999984
No 498
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.12 E-value=6.5e-11 Score=105.53 Aligned_cols=66 Identities=32% Similarity=0.398 Sum_probs=52.2
Q ss_pred ccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCcc
Q 016165 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (394)
Q Consensus 286 ~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~ 363 (394)
..+.++|+||+.. |..-....+..+|++|+++|+.. +...+..+.++.+...+.|+++++||+|+.
T Consensus 70 ~~i~~iDtPG~~~-----------f~~~~~~~~~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 70 RKITLIDTPGHED-----------FIKEMIRGLRQADIAILVVDAND-GIQPQTEEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp EEEEEEEESSSHH-----------HHHHHHHHHTTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT-SEEEEEETCTSS
T ss_pred cceeecccccccc-----------eeecccceecccccceeeeeccc-ccccccccccccccccccceEEeeeeccch
Confidence 3788999999843 11122334789999999999986 667888888988888899999999999987
No 499
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.11 E-value=2.5e-10 Score=98.48 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=72.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|+|||||+|.+.+... .....|+.+.+... ..+.+... ..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~-----------------~~~~~~~~--~~---------- 49 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF---TKDYKKTIGVDFLE-----------------KQIFLRQS--DE---------- 49 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcEEEEEEE-----------------EEEEEcCC--CC----------
Confidence 589999999999999999998652 11112222221110 00000000 00
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc--CCCeEEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRVV 356 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~--~~~~viiv 356 (394)
-..+.++||||... |..+...+++++|.+++++|.........+..++..+.+ .+.|+++|
T Consensus 50 ------~~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv 112 (162)
T cd04106 50 ------DVRLMLWDTAGQEE-----------FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLV 112 (162)
T ss_pred ------EEEEEEeeCCchHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 01678999999621 222556778999999999998763323334455554433 36799999
Q ss_pred EecCCccC
Q 016165 357 LNKADQVD 364 (394)
Q Consensus 357 ~nK~Dl~~ 364 (394)
.||+|+.+
T Consensus 113 ~nK~Dl~~ 120 (162)
T cd04106 113 QTKIDLLD 120 (162)
T ss_pred EEChhccc
Confidence 99999854
No 500
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=4.9e-11 Score=127.51 Aligned_cols=85 Identities=35% Similarity=0.629 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCC
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQ 88 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g~~ 88 (394)
..+++.+...|+++|..+|+.++|.|+|.+|+.||.+||||..+|++||.++|..+.|+|++.+|++|++|++++|+|..
T Consensus 3 ~~~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~ 82 (847)
T KOG0998|consen 3 LGLSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRE 82 (847)
T ss_pred CCCCCCccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcccC
Confidence 34667778999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccC
Q 016165 89 VTHDL 93 (394)
Q Consensus 89 ~~~~l 93 (394)
+...-
T Consensus 83 ~~~~~ 87 (847)
T KOG0998|consen 83 LSAKK 87 (847)
T ss_pred cCccc
Confidence 87655
Done!