Query 016165
Match_columns 394
No_of_seqs 350 out of 3498
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 09:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fia_A Intersectin-1; EH 1 dom 99.9 2.3E-27 7.8E-32 192.6 11.1 99 4-104 20-118 (121)
2 3rlf_A Maltose/maltodextrin im 99.9 1.8E-25 6.3E-30 217.4 5.0 192 174-392 6-222 (381)
3 3tui_C Methionine import ATP-b 99.9 2.2E-25 7.6E-30 215.4 4.9 195 174-393 27-253 (366)
4 3fvq_A Fe(3+) IONS import ATP- 99.9 4.2E-25 1.4E-29 213.4 5.2 192 174-392 7-227 (359)
5 2yyz_A Sugar ABC transporter, 99.9 1.6E-24 5.5E-29 209.8 5.2 191 175-392 7-222 (359)
6 2it1_A 362AA long hypothetical 99.9 1.7E-24 5.7E-29 209.9 5.1 191 175-392 7-222 (362)
7 1z47_A CYSA, putative ABC-tran 99.9 1.6E-24 5.4E-29 209.4 4.7 191 175-392 18-234 (355)
8 1oxx_K GLCV, glucose, ABC tran 99.9 1.9E-24 6.5E-29 209.3 4.7 191 175-392 7-229 (353)
9 2olj_A Amino acid ABC transpor 99.9 2.3E-24 7.7E-29 200.8 5.0 192 173-391 26-246 (263)
10 1v43_A Sugar-binding transport 99.9 2.4E-24 8.2E-29 209.6 5.3 191 175-392 15-230 (372)
11 3tif_A Uncharacterized ABC tra 99.9 1.8E-24 6.2E-29 198.5 3.0 191 176-391 6-232 (235)
12 1ji0_A ABC transporter; ATP bi 99.9 4.5E-24 1.5E-28 196.5 5.6 190 175-391 10-226 (240)
13 1b0u_A Histidine permease; ABC 99.9 1.6E-24 5.4E-29 202.1 2.5 192 173-391 8-240 (262)
14 4g1u_C Hemin import ATP-bindin 99.9 2.5E-24 8.5E-29 201.0 3.8 193 173-392 13-236 (266)
15 1g29_1 MALK, maltose transport 99.9 3E-24 1E-28 209.2 4.2 191 175-392 7-228 (372)
16 3gfo_A Cobalt import ATP-bindi 99.9 9E-25 3.1E-29 204.7 -0.2 194 173-392 9-232 (275)
17 2pcj_A ABC transporter, lipopr 99.9 3.1E-24 1.1E-28 195.6 2.9 185 175-387 8-222 (224)
18 3d31_A Sulfate/molybdate ABC t 99.9 4.9E-24 1.7E-28 205.7 3.9 190 175-392 5-216 (348)
19 1g6h_A High-affinity branched- 99.9 2.6E-24 9.1E-29 200.1 1.7 189 175-390 11-239 (257)
20 1vpl_A ABC transporter, ATP-bi 99.9 5.2E-24 1.8E-28 197.7 3.4 192 173-391 17-233 (256)
21 2onk_A Molybdate/tungstate ABC 99.9 1.4E-23 4.7E-28 193.1 4.3 187 176-391 6-214 (240)
22 1eh2_A EPS15; calcium binding, 99.9 1.1E-21 3.9E-26 157.1 12.1 97 7-110 5-101 (106)
23 2nq2_C Hypothetical ABC transp 99.9 7.8E-23 2.7E-27 189.6 6.0 182 175-391 8-215 (253)
24 1mv5_A LMRA, multidrug resista 99.9 1.1E-22 3.9E-27 187.5 6.5 187 176-391 6-224 (243)
25 2qpt_A EH domain-containing pr 99.9 6.5E-22 2.2E-26 202.5 10.3 97 8-112 450-546 (550)
26 2ihy_A ABC transporter, ATP-bi 99.9 1.9E-23 6.4E-28 196.4 -1.4 192 173-391 23-250 (279)
27 2d2e_A SUFC protein; ABC-ATPas 99.9 8.1E-23 2.8E-27 189.3 2.6 187 175-388 7-228 (250)
28 3nh6_A ATP-binding cassette SU 99.9 1.1E-22 3.7E-27 193.1 3.1 191 173-391 55-275 (306)
29 2ff7_A Alpha-hemolysin translo 99.8 9.2E-23 3.2E-27 188.4 1.5 191 174-391 10-230 (247)
30 2yz2_A Putative ABC transporte 99.8 5.4E-23 1.9E-27 192.1 -0.3 192 175-391 6-225 (266)
31 2zu0_C Probable ATP-dependent 99.8 1.9E-22 6.4E-27 188.5 3.1 194 172-390 21-251 (267)
32 2qi9_C Vitamin B12 import ATP- 99.8 3E-22 1E-26 185.1 2.9 179 187-391 14-220 (249)
33 3gd7_A Fusion complex of cysti 99.8 3.4E-22 1.1E-26 195.6 1.9 193 173-393 21-242 (390)
34 2ixe_A Antigen peptide transpo 99.8 7.3E-22 2.5E-26 184.9 3.6 192 174-391 19-243 (271)
35 2qpt_A EH domain-containing pr 99.8 2.7E-20 9.3E-25 190.5 14.7 244 140-383 8-251 (550)
36 2jq6_A EH domain-containing pr 99.8 2.1E-20 7.3E-25 156.1 10.9 95 8-110 43-137 (139)
37 2ghi_A Transport protein; mult 99.8 1.5E-21 5.1E-26 181.7 2.0 192 172-391 18-240 (260)
38 2pze_A Cystic fibrosis transme 99.8 2.1E-21 7.1E-26 177.4 2.1 183 175-391 10-216 (229)
39 3b5x_A Lipid A export ATP-bind 99.8 1.3E-20 4.4E-25 194.8 7.9 193 172-391 342-565 (582)
40 1sgw_A Putative ABC transporte 99.8 1.6E-21 5.6E-26 176.0 0.8 181 173-382 12-210 (214)
41 1fi6_A EH domain protein REPS1 99.8 1.2E-19 4.2E-24 141.6 10.6 87 9-95 1-87 (92)
42 1c07_A Protein (epidermal grow 99.8 9.7E-20 3.3E-24 143.1 9.6 94 8-107 1-95 (95)
43 2yl4_A ATP-binding cassette SU 99.8 2.2E-20 7.4E-25 193.6 6.3 193 173-392 343-569 (595)
44 2cbz_A Multidrug resistance-as 99.8 3.4E-21 1.1E-25 176.9 -0.1 183 175-391 7-215 (237)
45 3gee_A MNME, tRNA modification 99.8 1.7E-23 5.8E-28 210.4 -17.8 218 90-367 125-360 (476)
46 3b60_A Lipid A export ATP-bind 99.8 1.4E-20 4.6E-25 194.7 3.2 191 174-391 344-565 (582)
47 1qjt_A EH1, epidermal growth f 99.8 2E-19 6.9E-24 142.4 8.8 92 13-109 7-98 (99)
48 1iq3_A Ralbp1-interacting prot 99.8 7.4E-20 2.5E-24 147.6 6.3 99 5-109 10-108 (110)
49 3qf4_B Uncharacterized ABC tra 99.8 2.9E-20 9.9E-25 192.7 4.9 191 173-391 356-576 (598)
50 3qf4_A ABC transporter, ATP-bi 99.8 2.1E-20 7.1E-25 193.3 3.2 193 172-391 342-564 (587)
51 4a82_A Cystic fibrosis transme 99.8 1.6E-20 5.6E-25 193.9 1.5 193 172-391 340-562 (578)
52 3geh_A MNME, tRNA modification 99.8 1.1E-22 3.9E-27 203.7 -15.9 215 90-365 117-345 (462)
53 2pjz_A Hypothetical protein ST 99.8 2.9E-20 9.9E-25 173.0 0.2 185 176-391 6-213 (263)
54 2bbs_A Cystic fibrosis transme 99.7 1.5E-19 5.1E-24 170.5 0.8 172 186-391 51-245 (290)
55 4f4c_A Multidrug resistance pr 99.7 3.8E-19 1.3E-23 198.7 -0.1 193 172-391 1077-1302(1321)
56 2kgr_A Intersectin-1; structur 99.7 4.4E-17 1.5E-21 131.6 11.4 99 7-111 4-102 (111)
57 1xzp_A Probable tRNA modificat 99.7 4.9E-20 1.7E-24 185.4 -10.8 213 91-364 138-364 (482)
58 4f4c_A Multidrug resistance pr 99.7 5.1E-18 1.7E-22 189.7 3.8 193 172-391 416-639 (1321)
59 3bk7_A ABC transporter ATP-bin 99.7 1E-17 3.4E-22 173.1 5.3 181 177-392 363-562 (607)
60 1yqt_A RNAse L inhibitor; ATP- 99.7 1.3E-17 4.3E-22 170.4 5.4 181 177-392 293-492 (538)
61 3j16_B RLI1P; ribosome recycli 99.7 8.8E-18 3E-22 173.3 3.8 183 178-393 353-559 (608)
62 3g5u_A MCG1178, multidrug resi 99.7 6.6E-18 2.3E-22 188.3 2.6 193 172-391 388-611 (1284)
63 1yqt_A RNAse L inhibitor; ATP- 99.7 1.8E-17 6.1E-22 169.3 4.5 184 176-380 26-234 (538)
64 3g5u_A MCG1178, multidrug resi 99.7 1.6E-17 5.5E-22 185.2 2.5 189 176-391 1035-1256(1284)
65 3ozx_A RNAse L inhibitor; ATP 99.7 6.3E-17 2.2E-21 165.0 6.1 171 176-380 274-462 (538)
66 3bk7_A ABC transporter ATP-bin 99.6 4E-17 1.4E-21 168.6 4.3 184 176-380 96-304 (607)
67 2iw3_A Elongation factor 3A; a 99.6 9.2E-17 3.1E-21 172.0 4.0 178 175-389 439-631 (986)
68 3ux8_A Excinuclease ABC, A sub 99.6 2.8E-16 9.6E-21 164.9 5.7 92 285-391 186-296 (670)
69 3ux8_A Excinuclease ABC, A sub 99.6 1.5E-16 5E-21 167.1 -0.5 84 293-391 540-638 (670)
70 2iw3_A Elongation factor 3A; a 99.6 3.7E-16 1.3E-20 167.3 0.9 89 281-387 880-981 (986)
71 3ozx_A RNAse L inhibitor; ATP 99.6 8.1E-16 2.8E-20 156.8 3.1 88 278-381 116-214 (538)
72 3j16_B RLI1P; ribosome recycli 99.5 7.7E-16 2.6E-20 158.8 1.4 88 279-381 200-298 (608)
73 1wf3_A GTP-binding protein; GT 99.5 9E-14 3.1E-18 131.8 13.8 124 199-367 9-134 (301)
74 2wji_A Ferrous iron transport 99.5 2.7E-14 9.4E-19 122.8 8.8 114 198-363 4-121 (165)
75 3iev_A GTP-binding protein ERA 99.5 1.1E-13 3.7E-18 131.8 12.7 125 199-367 12-140 (308)
76 3iby_A Ferrous iron transport 99.5 5.5E-14 1.9E-18 130.3 8.1 117 198-364 2-124 (256)
77 3b1v_A Ferrous iron uptake tra 99.4 2.2E-13 7.4E-18 127.3 10.0 113 198-363 4-120 (272)
78 4dhe_A Probable GTP-binding pr 99.4 1.3E-12 4.5E-17 117.5 14.5 125 197-368 29-162 (223)
79 2gj8_A MNME, tRNA modification 99.4 4.2E-13 1.4E-17 116.3 10.4 119 198-363 5-128 (172)
80 3pih_A Uvrabc system protein A 99.4 6.4E-14 2.2E-18 149.8 6.0 96 282-392 786-901 (916)
81 1mky_A Probable GTP-binding pr 99.4 2.1E-13 7.3E-18 136.1 8.6 123 198-364 2-124 (439)
82 3i8s_A Ferrous iron transport 99.4 1.8E-13 6.2E-18 128.0 7.5 117 198-364 4-126 (274)
83 4dcu_A GTP-binding protein ENG 99.4 4.2E-13 1.4E-17 134.5 10.3 120 198-365 24-146 (456)
84 1f6b_A SAR1; gtpases, N-termin 99.4 2.7E-13 9.4E-18 120.2 7.9 128 180-364 8-140 (198)
85 2hjg_A GTP-binding protein ENG 99.4 5.9E-13 2E-17 132.7 11.0 122 198-364 4-125 (436)
86 3k53_A Ferrous iron transport 99.4 2.4E-13 8.1E-18 126.9 7.1 114 199-364 5-123 (271)
87 3a1s_A Iron(II) transport prot 99.4 4.2E-13 1.4E-17 124.5 8.7 115 199-363 7-123 (258)
88 1m2o_B GTP-binding protein SAR 99.4 1.7E-12 5.7E-17 114.3 11.9 122 187-364 12-138 (190)
89 2wjg_A FEOB, ferrous iron tran 99.4 4.5E-13 1.5E-17 117.1 7.7 117 198-364 8-126 (188)
90 3sop_A Neuronal-specific septi 99.4 2.2E-13 7.4E-18 127.2 5.6 66 293-371 95-161 (270)
91 3t34_A Dynamin-related protein 99.4 4.4E-12 1.5E-16 123.2 14.8 184 170-365 9-218 (360)
92 1ega_A Protein (GTP-binding pr 99.4 7.4E-13 2.5E-17 125.6 8.9 124 199-368 10-135 (301)
93 3pqc_A Probable GTP-binding pr 99.4 8.7E-12 3E-16 109.1 14.8 119 197-366 23-149 (195)
94 2qag_C Septin-7; cell cycle, c 99.4 1.6E-12 5.6E-17 128.2 9.8 144 174-370 14-187 (418)
95 1svi_A GTP-binding protein YSX 99.3 8.4E-12 2.9E-16 109.6 13.1 121 198-368 24-152 (195)
96 2hjg_A GTP-binding protein ENG 99.3 6.9E-13 2.3E-17 132.2 6.6 123 198-364 176-300 (436)
97 3lxw_A GTPase IMAP family memb 99.3 2.1E-12 7.1E-17 119.0 8.5 118 199-364 23-153 (247)
98 1mky_A Probable GTP-binding pr 99.3 2.3E-12 7.9E-17 128.5 9.4 124 198-365 181-307 (439)
99 3clv_A RAB5 protein, putative; 99.3 7.8E-12 2.7E-16 110.0 11.6 149 198-362 8-159 (208)
100 2npi_A Protein CLP1; CLP1-PCF1 99.3 2.7E-13 9.1E-18 135.6 2.0 165 196-388 137-333 (460)
101 3q72_A GTP-binding protein RAD 99.3 4.5E-12 1.5E-16 108.2 9.4 114 199-365 4-121 (166)
102 2dyk_A GTP-binding protein; GT 99.3 3.5E-12 1.2E-16 108.2 8.6 121 199-365 3-123 (161)
103 1r8s_A ADP-ribosylation factor 99.3 1.9E-11 6.5E-16 104.0 13.2 111 199-365 2-116 (164)
104 3lxx_A GTPase IMAP family memb 99.3 1.9E-12 6.5E-17 118.3 7.0 124 199-368 31-163 (239)
105 2lkc_A Translation initiation 99.3 4.7E-12 1.6E-16 109.3 9.1 113 198-364 9-121 (178)
106 4bas_A ADP-ribosylation factor 99.3 9.3E-12 3.2E-16 109.5 10.7 113 199-365 19-142 (199)
107 4gp7_A Metallophosphoesterase; 99.3 5.1E-13 1.7E-17 116.0 2.4 70 289-370 76-164 (171)
108 2vf7_A UVRA2, excinuclease ABC 99.3 1.1E-13 3.9E-18 146.7 -2.2 96 281-391 710-825 (842)
109 1upt_A ARL1, ADP-ribosylation 99.3 1.3E-11 4.3E-16 105.7 11.1 112 198-365 8-123 (171)
110 2nzj_A GTP-binding protein REM 99.3 1E-11 3.6E-16 106.7 10.4 117 199-365 6-126 (175)
111 1fzq_A ADP-ribosylation factor 99.3 9.6E-12 3.3E-16 108.4 10.3 112 198-365 17-132 (181)
112 2qu8_A Putative nucleolar GTP- 99.3 7.2E-12 2.5E-16 113.5 9.6 121 198-365 30-157 (228)
113 4a9a_A Ribosome-interacting GT 99.3 9.8E-12 3.4E-16 120.7 11.1 115 199-362 74-194 (376)
114 1zd9_A ADP-ribosylation factor 99.3 3.1E-11 1.1E-15 105.7 13.3 112 198-364 23-138 (188)
115 2e87_A Hypothetical protein PH 99.3 1.2E-11 4E-16 120.1 11.2 126 198-370 168-300 (357)
116 4dcu_A GTP-binding protein ENG 99.3 3.1E-12 1.1E-16 128.2 7.3 118 198-364 196-320 (456)
117 2r6f_A Excinuclease ABC subuni 99.3 4.7E-13 1.6E-17 142.6 1.1 95 282-391 826-940 (972)
118 1zj6_A ADP-ribosylation factor 99.3 1.9E-11 6.6E-16 106.8 11.2 111 198-364 17-131 (187)
119 1u8z_A RAS-related protein RAL 99.3 1.7E-11 5.9E-16 104.2 10.6 114 199-364 6-123 (168)
120 2erx_A GTP-binding protein DI- 99.3 1.8E-11 6E-16 104.7 10.5 115 199-365 5-124 (172)
121 2g6b_A RAS-related protein RAB 99.3 1.6E-11 5.4E-16 106.2 10.2 116 199-364 12-130 (180)
122 2h17_A ADP-ribosylation factor 99.3 1.1E-11 3.9E-16 107.7 9.1 110 199-364 23-136 (181)
123 2ged_A SR-beta, signal recogni 99.3 7.3E-12 2.5E-16 109.9 7.9 118 198-368 49-174 (193)
124 3tkl_A RAS-related protein RAB 99.3 1.1E-11 3.7E-16 108.9 9.0 117 198-365 17-136 (196)
125 1kao_A RAP2A; GTP-binding prot 99.3 2.6E-11 8.9E-16 103.0 11.1 114 199-364 5-122 (167)
126 1c1y_A RAS-related protein RAP 99.3 2.2E-11 7.5E-16 103.7 10.3 114 199-364 5-122 (167)
127 3t5d_A Septin-7; GTP-binding p 99.3 6.5E-11 2.2E-15 110.5 14.4 49 321-370 116-164 (274)
128 2qtf_A Protein HFLX, GTP-bindi 99.3 9.5E-12 3.2E-16 120.9 8.9 121 199-365 181-307 (364)
129 3cbq_A GTP-binding protein REM 99.3 1.6E-11 5.6E-16 108.5 9.6 116 199-364 25-144 (195)
130 1ek0_A Protein (GTP-binding pr 99.3 1.8E-11 6.2E-16 104.4 9.5 115 199-364 5-122 (170)
131 3llu_A RAS-related GTP-binding 99.2 4.9E-11 1.7E-15 105.2 12.3 68 287-365 70-144 (196)
132 3cph_A RAS-related protein SEC 99.2 6.6E-12 2.3E-16 111.8 6.7 116 197-363 20-138 (213)
133 1ksh_A ARF-like protein 2; sma 99.2 2.6E-11 8.9E-16 105.7 10.3 112 198-365 19-134 (186)
134 2ygr_A Uvrabc system protein A 99.2 6.5E-13 2.2E-17 141.9 -0.0 94 283-391 845-958 (993)
135 2y8e_A RAB-protein 6, GH09086P 99.2 1.1E-11 3.7E-16 106.9 7.7 116 199-365 16-134 (179)
136 3kkq_A RAS-related protein M-R 99.2 2.3E-11 8E-16 105.6 9.9 114 199-364 20-137 (183)
137 1z06_A RAS-related protein RAB 99.2 2.3E-11 8E-16 106.4 9.9 116 199-364 22-141 (189)
138 3bc1_A RAS-related protein RAB 99.2 2.6E-11 8.9E-16 105.8 10.2 123 198-364 12-141 (195)
139 2ce2_X GTPase HRAS; signaling 99.2 4.2E-11 1.4E-15 101.4 11.2 114 199-364 5-122 (166)
140 2j69_A Bacterial dynamin-like 99.2 3.4E-11 1.2E-15 126.5 12.7 153 198-365 70-245 (695)
141 3tw8_B RAS-related protein RAB 99.2 9.7E-12 3.3E-16 107.4 7.1 117 198-365 10-128 (181)
142 2a9k_A RAS-related protein RAL 99.2 3.8E-11 1.3E-15 104.2 10.9 114 199-364 20-137 (187)
143 1jwy_B Dynamin A GTPase domain 99.2 3.3E-11 1.1E-15 114.4 11.4 78 286-365 131-213 (315)
144 4dsu_A GTPase KRAS, isoform 2B 99.2 3.7E-11 1.3E-15 104.5 10.8 114 199-364 6-123 (189)
145 3q85_A GTP-binding protein REM 99.2 1.4E-11 4.9E-16 105.3 7.8 116 199-364 4-123 (169)
146 1z0f_A RAB14, member RAS oncog 99.2 3.1E-11 1.1E-15 104.0 9.9 116 198-364 16-134 (179)
147 2efe_B Small GTP-binding prote 99.2 2.6E-11 8.9E-16 104.9 9.5 115 199-364 14-131 (181)
148 2aka_B Dynamin-1; fusion prote 99.2 5.2E-11 1.8E-15 112.1 12.3 78 286-365 125-207 (299)
149 1zbd_A Rabphilin-3A; G protein 99.2 3.4E-11 1.2E-15 106.5 10.4 116 198-364 9-127 (203)
150 1wms_A RAB-9, RAB9, RAS-relate 99.2 1.8E-11 6.3E-16 105.4 8.4 114 199-363 9-129 (177)
151 2fn4_A P23, RAS-related protei 99.2 3.9E-11 1.3E-15 103.5 10.5 114 199-364 11-128 (181)
152 3oes_A GTPase rhebl1; small GT 99.2 4.6E-11 1.6E-15 105.8 11.1 115 198-364 25-143 (201)
153 2h57_A ADP-ribosylation factor 99.2 3.1E-11 1.1E-15 105.7 9.8 113 199-365 23-141 (190)
154 1r2q_A RAS-related protein RAB 99.2 2.8E-11 9.6E-16 103.2 9.3 115 199-364 8-125 (170)
155 2fg5_A RAB-22B, RAS-related pr 99.2 4.1E-11 1.4E-15 105.3 10.5 116 198-364 24-142 (192)
156 2hxs_A RAB-26, RAS-related pro 99.2 1.1E-11 3.6E-16 107.1 6.5 116 199-364 8-129 (178)
157 2hup_A RAS-related protein RAB 99.2 2.4E-11 8.3E-16 107.8 9.0 116 198-364 30-148 (201)
158 1g16_A RAS-related protein SEC 99.2 1.4E-11 4.8E-16 105.2 7.2 114 199-363 5-121 (170)
159 2bov_A RAla, RAS-related prote 99.2 5.4E-11 1.9E-15 105.1 11.2 114 199-364 16-133 (206)
160 1z08_A RAS-related protein RAB 99.2 1.5E-11 5.1E-16 105.2 7.3 116 198-364 7-125 (170)
161 4aby_A DNA repair protein RECN 99.2 2.6E-12 8.7E-17 127.0 2.7 72 297-384 296-379 (415)
162 2bme_A RAB4A, RAS-related prot 99.2 2.3E-11 7.9E-16 105.8 8.5 116 198-364 11-129 (186)
163 2oil_A CATX-8, RAS-related pro 99.2 4.5E-11 1.5E-15 104.9 10.4 116 198-364 26-144 (193)
164 1z0j_A RAB-22, RAS-related pro 99.2 4.8E-11 1.6E-15 101.8 10.3 116 199-365 8-126 (170)
165 1z2a_A RAS-related protein RAB 99.2 2.1E-11 7.1E-16 103.9 7.9 115 199-364 7-123 (168)
166 2xtp_A GTPase IMAP family memb 99.2 2E-11 6.8E-16 112.9 8.2 121 199-364 24-153 (260)
167 2atv_A RERG, RAS-like estrogen 99.2 6E-11 2.1E-15 104.5 10.9 114 198-364 29-146 (196)
168 2b6h_A ADP-ribosylation factor 99.2 4.9E-11 1.7E-15 105.0 10.2 112 198-365 30-145 (192)
169 1moz_A ARL1, ADP-ribosylation 99.2 3.3E-11 1.1E-15 104.5 8.9 111 198-364 19-133 (183)
170 3t1o_A Gliding protein MGLA; G 99.2 8.3E-11 2.8E-15 103.0 11.5 67 287-364 75-149 (198)
171 1x3s_A RAS-related protein RAB 99.2 3.8E-11 1.3E-15 105.1 9.3 115 199-364 17-135 (195)
172 1ky3_A GTP-binding protein YPT 99.2 2E-11 6.8E-16 105.5 7.3 115 199-363 10-131 (182)
173 2il1_A RAB12; G-protein, GDP, 99.2 3.6E-11 1.2E-15 105.7 9.1 116 199-365 28-146 (192)
174 3r7w_A Gtpase1, GTP-binding pr 99.2 4.9E-11 1.7E-15 113.3 10.5 122 198-365 4-130 (307)
175 2fu5_C RAS-related protein RAB 99.2 4.1E-12 1.4E-16 110.4 2.6 116 198-364 9-127 (183)
176 2ew1_A RAS-related protein RAB 99.2 3.2E-11 1.1E-15 107.3 8.2 116 198-364 27-145 (201)
177 2qnr_A Septin-2, protein NEDD5 99.2 3.9E-11 1.3E-15 113.6 9.1 38 177-220 4-41 (301)
178 1pui_A ENGB, probable GTP-bind 99.2 1.3E-10 4.4E-15 103.3 12.0 138 176-366 8-153 (210)
179 2qag_B Septin-6, protein NEDD5 99.2 4.1E-11 1.4E-15 117.9 9.4 152 178-371 22-197 (427)
180 2x77_A ADP-ribosylation factor 99.2 7.4E-11 2.5E-15 103.1 10.0 112 198-365 23-138 (189)
181 2bcg_Y Protein YP2, GTP-bindin 99.2 5.6E-11 1.9E-15 105.4 9.4 116 198-364 9-127 (206)
182 2atx_A Small GTP binding prote 99.2 4.5E-11 1.6E-15 104.9 8.6 115 199-365 20-137 (194)
183 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 1.1E-11 3.6E-16 120.7 4.9 78 292-384 275-364 (365)
184 3t5g_A GTP-binding protein RHE 99.2 8.1E-11 2.8E-15 101.9 9.9 114 199-364 8-125 (181)
185 2gf0_A GTP-binding protein DI- 99.2 7.3E-11 2.5E-15 103.8 9.6 115 198-364 9-128 (199)
186 2a5j_A RAS-related protein RAB 99.2 3.5E-11 1.2E-15 105.6 7.5 115 199-364 23-140 (191)
187 2gf9_A RAS-related protein RAB 99.2 1.3E-10 4.5E-15 101.6 11.0 116 198-364 23-141 (189)
188 2fv8_A H6, RHO-related GTP-bin 99.2 7.8E-11 2.7E-15 104.8 9.7 116 199-366 27-145 (207)
189 2p5s_A RAS and EF-hand domain 99.2 8.9E-11 3.1E-15 103.7 9.9 115 198-363 29-146 (199)
190 3dz8_A RAS-related protein RAB 99.2 3.1E-11 1.1E-15 105.9 6.9 114 198-364 24-142 (191)
191 3con_A GTPase NRAS; structural 99.2 1.2E-10 4.2E-15 101.7 10.6 114 199-364 23-140 (190)
192 2cxx_A Probable GTP-binding pr 99.2 1.2E-10 4.3E-15 101.3 10.7 112 199-365 3-137 (190)
193 2fh5_B SR-beta, signal recogni 99.2 3.9E-10 1.3E-14 100.6 14.0 114 198-365 8-130 (214)
194 2g3y_A GTP-binding protein GEM 99.2 5.4E-11 1.8E-15 106.8 8.3 118 198-364 38-159 (211)
195 1h65_A Chloroplast outer envel 99.2 6E-11 2.1E-15 110.5 8.8 121 198-365 40-169 (270)
196 2f7s_A C25KG, RAS-related prot 99.2 2E-11 6.7E-16 109.3 5.2 126 198-364 26-155 (217)
197 3cpj_B GTP-binding protein YPT 99.2 2.2E-11 7.5E-16 109.8 5.5 116 198-364 14-132 (223)
198 1mh1_A RAC1; GTP-binding, GTPa 99.2 3.9E-11 1.3E-15 104.1 6.8 115 199-365 7-124 (186)
199 2gco_A H9, RHO-related GTP-bin 99.2 1E-10 3.5E-15 103.6 9.5 116 199-366 27-145 (201)
200 3q3j_B RHO-related GTP-binding 99.1 5.8E-11 2E-15 106.5 8.0 114 199-364 29-145 (214)
201 1m7b_A RND3/RHOE small GTP-bin 99.1 7.1E-11 2.4E-15 102.9 8.4 114 199-364 9-125 (184)
202 1nrj_B SR-beta, signal recogni 99.1 1.7E-10 5.7E-15 103.3 10.9 111 198-365 13-135 (218)
203 2j0v_A RAC-like GTP-binding pr 99.1 5.3E-11 1.8E-15 106.1 7.4 117 198-366 10-129 (212)
204 4gzl_A RAS-related C3 botulinu 99.1 9.1E-11 3.1E-15 104.3 9.0 117 199-367 32-151 (204)
205 2o52_A RAS-related protein RAB 99.1 4.1E-11 1.4E-15 106.1 6.6 116 198-364 26-144 (200)
206 3qq5_A Small GTP-binding prote 99.1 2E-11 7E-16 120.6 5.0 119 198-366 35-156 (423)
207 1rj9_A FTSY, signal recognitio 99.1 6.9E-11 2.4E-15 111.9 8.5 136 198-362 103-259 (304)
208 3c5c_A RAS-like protein 12; GD 99.1 1.4E-10 4.7E-15 101.6 9.8 113 199-364 23-141 (187)
209 3def_A T7I23.11 protein; chlor 99.1 7E-11 2.4E-15 109.6 8.2 120 198-363 37-164 (262)
210 1vg8_A RAS-related protein RAB 99.1 6.5E-11 2.2E-15 104.8 7.5 115 199-364 10-131 (207)
211 1gwn_A RHO-related GTP-binding 99.1 9.2E-11 3.1E-15 104.6 8.4 115 198-364 29-146 (205)
212 3reg_A RHO-like small GTPase; 99.1 1.2E-10 4.2E-15 102.2 9.1 114 199-364 25-141 (194)
213 2j1l_A RHO-related GTP-binding 99.1 8.2E-11 2.8E-15 105.4 8.1 116 199-366 36-154 (214)
214 2yc2_C IFT27, small RAB-relate 99.1 2.7E-11 9.2E-16 107.2 4.6 118 199-364 22-146 (208)
215 2iwr_A Centaurin gamma 1; ANK 99.1 3.8E-10 1.3E-14 97.4 11.8 106 199-362 9-120 (178)
216 3ihw_A Centg3; RAS, centaurin, 99.1 2.9E-10 9.9E-15 99.4 10.9 107 199-363 22-132 (184)
217 1lnz_A SPO0B-associated GTP-bi 99.1 2.3E-11 7.8E-16 117.1 4.1 120 199-366 160-290 (342)
218 2zej_A Dardarin, leucine-rich 99.1 1.1E-10 3.6E-15 102.0 8.0 123 199-368 4-130 (184)
219 3b85_A Phosphate starvation-in 99.1 2.1E-12 7.2E-17 115.8 -3.1 142 186-359 13-157 (208)
220 2cjw_A GTP-binding protein GEM 99.1 6.7E-11 2.3E-15 104.2 6.5 117 199-364 8-128 (192)
221 2q3h_A RAS homolog gene family 99.1 6.5E-11 2.2E-15 104.5 6.4 114 199-364 22-138 (201)
222 4dkx_A RAS-related protein RAB 99.1 1.6E-10 5.5E-15 104.1 8.8 116 199-365 15-133 (216)
223 3bwd_D RAC-like GTP-binding pr 99.1 6.2E-11 2.1E-15 102.6 5.8 118 198-367 9-129 (182)
224 3l0i_B RAS-related protein RAB 99.1 1.6E-11 5.5E-16 108.6 2.0 116 199-365 35-153 (199)
225 4djt_A GTP-binding nuclear pro 99.1 5.4E-11 1.9E-15 106.5 5.5 117 199-365 13-132 (218)
226 3lvq_E ARF-GAP with SH3 domain 99.1 2E-10 7E-15 116.1 10.1 110 199-364 324-437 (497)
227 2x2e_A Dynamin-1; nitration, h 99.1 3.8E-10 1.3E-14 109.2 11.4 77 286-365 130-212 (353)
228 3gj0_A GTP-binding nuclear pro 99.1 5.6E-11 1.9E-15 106.8 5.2 114 199-364 17-133 (221)
229 2f9l_A RAB11B, member RAS onco 99.1 1.5E-10 5.1E-15 102.4 7.7 116 198-364 6-124 (199)
230 1ye8_A Protein THEP1, hypothet 99.1 6.8E-11 2.3E-15 103.3 4.5 79 293-384 73-159 (178)
231 3o47_A ADP-ribosylation factor 99.1 3.5E-10 1.2E-14 108.5 9.1 111 199-365 167-281 (329)
232 3sjy_A Translation initiation 99.0 1.1E-09 3.7E-14 107.9 12.1 73 286-369 75-148 (403)
233 3j2k_7 ERF3, eukaryotic polype 99.0 7.7E-10 2.6E-14 110.2 10.9 66 287-364 96-169 (439)
234 2pt7_A CAG-ALFA; ATPase, prote 99.0 4.4E-10 1.5E-14 107.7 8.2 130 188-381 160-291 (330)
235 2qm8_A GTPase/ATPase; G protei 99.0 6.1E-11 2.1E-15 114.1 2.1 48 172-221 30-79 (337)
236 2h5e_A Peptide chain release f 99.0 7.9E-10 2.7E-14 112.4 10.1 66 287-364 83-148 (529)
237 1oix_A RAS-related protein RAB 99.0 4.9E-10 1.7E-14 98.5 7.4 116 198-364 30-148 (191)
238 3th5_A RAS-related C3 botulinu 98.6 3.6E-11 1.2E-15 106.6 0.0 115 199-365 32-149 (204)
239 1wxq_A GTP-binding protein; st 99.0 4.2E-10 1.4E-14 110.5 7.6 35 199-236 2-36 (397)
240 3izy_P Translation initiation 99.0 1.9E-10 6.6E-15 116.6 5.3 114 197-364 4-118 (537)
241 3zvr_A Dynamin-1; hydrolase, D 99.0 1.6E-09 5.5E-14 113.6 12.1 153 198-365 52-232 (772)
242 3b9q_A Chloroplast SRP recepto 99.0 3.8E-10 1.3E-14 106.8 6.8 144 190-362 91-258 (302)
243 3tr5_A RF-3, peptide chain rel 99.0 2.3E-09 7.7E-14 109.0 12.7 66 287-364 83-148 (528)
244 1tq4_A IIGP1, interferon-induc 99.0 1.6E-10 5.4E-15 113.7 3.2 120 199-347 71-213 (413)
245 2xex_A Elongation factor G; GT 99.0 8.5E-10 2.9E-14 115.8 8.9 67 287-365 76-142 (693)
246 1wb1_A Translation elongation 99.0 1.4E-09 4.8E-14 109.5 10.1 122 199-368 21-143 (482)
247 1zun_B Sulfate adenylate trans 99.0 2E-09 6.7E-14 107.1 10.9 66 287-364 105-171 (434)
248 3p26_A Elongation factor 1 alp 99.0 2.3E-09 8E-14 108.0 11.5 67 287-364 112-185 (483)
249 3dpu_A RAB family protein; roc 99.0 8.9E-10 3E-14 112.5 8.0 121 198-364 42-164 (535)
250 2og2_A Putative signal recogni 98.9 1.2E-09 4E-14 105.6 7.9 143 191-362 149-315 (359)
251 2c78_A Elongation factor TU-A; 98.9 2.1E-09 7.1E-14 105.9 9.7 66 287-364 76-142 (405)
252 1zo1_I IF2, translation initia 98.9 9.5E-10 3.2E-14 110.7 6.8 111 198-364 5-117 (501)
253 2v9p_A Replication protein E1; 98.9 2.5E-12 8.6E-17 121.5 -11.5 42 177-221 107-150 (305)
254 2dy1_A Elongation factor G; tr 98.9 1.6E-09 5.4E-14 113.3 8.0 65 287-363 75-139 (665)
255 2yhs_A FTSY, cell division pro 98.9 1.8E-09 6E-14 107.8 7.6 152 189-362 283-450 (503)
256 3izq_1 HBS1P, elongation facto 98.9 2.8E-09 9.6E-14 110.2 9.5 67 287-364 246-319 (611)
257 2dpy_A FLII, flagellum-specifi 98.9 7.9E-11 2.7E-15 117.0 -2.5 178 175-389 135-340 (438)
258 1dar_A EF-G, elongation factor 98.9 4E-09 1.4E-13 110.7 10.0 67 287-365 78-144 (691)
259 3thx_A DNA mismatch repair pro 98.9 1.1E-09 3.8E-14 117.7 5.6 146 188-390 651-810 (934)
260 2wkq_A NPH1-1, RAS-related C3 98.9 3.1E-09 1.1E-13 101.0 7.6 116 198-365 156-274 (332)
261 3r7w_B Gtpase2, GTP-binding pr 98.9 1.4E-08 4.8E-13 96.4 11.7 71 287-366 47-122 (331)
262 2elf_A Protein translation elo 98.8 1.1E-08 3.8E-13 99.4 11.2 68 287-368 61-130 (370)
263 1znw_A Guanylate kinase, GMP k 98.8 7.1E-11 2.4E-15 105.5 -4.1 36 186-221 9-44 (207)
264 2www_A Methylmalonic aciduria 98.8 2.4E-09 8.1E-14 103.5 6.2 61 287-366 168-228 (349)
265 2lv7_A Calcium-binding protein 98.8 6.1E-09 2.1E-13 81.9 7.5 70 8-77 27-98 (100)
266 2qag_A Septin-2, protein NEDD5 98.8 9E-09 3.1E-13 99.8 10.3 48 322-370 147-194 (361)
267 2pmy_A RAS and EF-hand domain- 98.8 5.7E-09 1.9E-13 80.3 6.8 70 9-78 19-88 (91)
268 1n0u_A EF-2, elongation factor 98.8 3.8E-09 1.3E-13 113.2 7.7 65 287-363 99-163 (842)
269 1udx_A The GTP-binding protein 98.8 2.5E-09 8.5E-14 105.4 5.8 42 190-234 148-191 (416)
270 2rdo_7 EF-G, elongation factor 98.8 1.3E-08 4.5E-13 106.9 11.6 67 287-365 83-149 (704)
271 1g7s_A Translation initiation 98.8 8E-09 2.7E-13 106.3 9.7 63 287-363 71-135 (594)
272 1d2e_A Elongation factor TU (E 98.8 4.2E-09 1.4E-13 103.5 7.0 66 287-364 67-133 (397)
273 2p67_A LAO/AO transport system 98.8 2.8E-09 9.5E-14 102.6 5.5 35 187-221 44-80 (341)
274 2obl_A ESCN; ATPase, hydrolase 98.8 1.9E-10 6.6E-15 110.8 -3.0 175 176-389 50-251 (347)
275 2opo_A Polcalcin CHE A 3; calc 98.8 1.5E-08 5.1E-13 76.6 8.2 69 10-78 4-73 (86)
276 1z6g_A Guanylate kinase; struc 98.8 3.4E-10 1.2E-14 102.0 -1.3 36 186-221 10-47 (218)
277 2ywe_A GTP-binding protein LEP 98.8 1.3E-08 4.4E-13 104.6 10.0 66 287-364 74-139 (600)
278 3mca_A HBS1, elongation factor 98.8 1.3E-09 4.4E-14 112.4 2.2 67 287-364 256-329 (592)
279 2ktg_A Calmodulin, putative; e 98.8 2.4E-08 8.2E-13 75.2 8.7 72 8-79 5-78 (85)
280 3cb4_D GTP-binding protein LEP 98.8 1.1E-08 3.6E-13 105.3 8.8 66 287-364 72-137 (599)
281 1f60_A Elongation factor EEF1A 98.8 3.8E-08 1.3E-12 98.4 11.9 65 287-363 86-158 (458)
282 2joj_A Centrin protein; N-term 98.8 1.6E-08 5.4E-13 74.7 6.8 68 11-78 1-70 (77)
283 3vqt_A RF-3, peptide chain rel 98.7 1.1E-08 3.9E-13 104.3 8.0 128 199-364 33-166 (548)
284 1cr0_A DNA primase/helicase; R 98.7 2.2E-09 7.6E-14 101.0 2.3 35 187-221 23-59 (296)
285 2eyu_A Twitching motility prot 98.7 4.6E-08 1.6E-12 90.5 11.0 35 187-221 15-49 (261)
286 1avs_A Troponin C; muscle cont 98.7 3.5E-08 1.2E-12 75.3 8.5 70 10-79 13-84 (90)
287 3szr_A Interferon-induced GTP- 98.7 4.9E-08 1.7E-12 101.0 12.2 72 287-365 148-229 (608)
288 1tf7_A KAIC; homohexamer, hexa 98.7 1.7E-09 5.9E-14 110.1 1.1 150 194-381 278-444 (525)
289 3e70_C DPA, signal recognition 98.7 1.2E-08 4.2E-13 97.4 6.9 139 199-363 131-281 (328)
290 1jny_A EF-1-alpha, elongation 98.7 2.4E-08 8.1E-13 99.3 9.2 66 287-364 85-158 (435)
291 1kk1_A EIF2gamma; initiation o 98.7 4E-08 1.4E-12 96.9 10.8 70 287-367 84-154 (410)
292 1jal_A YCHF protein; nucleotid 98.7 1.8E-08 6.1E-13 97.3 8.0 105 198-332 3-108 (363)
293 3ec1_A YQEH GTPase; atnos1, at 98.7 1.5E-09 5.1E-14 105.6 0.4 135 198-382 163-306 (369)
294 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.2E-08 4.1E-13 99.6 6.0 38 196-235 19-56 (392)
295 1r5b_A Eukaryotic peptide chai 98.7 1.5E-08 5.3E-13 101.5 6.8 66 287-364 122-195 (467)
296 3h2y_A GTPase family protein; 98.7 2.9E-09 9.9E-14 103.5 0.7 138 198-382 161-305 (368)
297 3jvv_A Twitching mobility prot 98.7 1.3E-07 4.6E-12 91.2 12.2 57 313-379 189-245 (356)
298 1yx7_A Calsensin, LAN3-6 antig 98.7 7.8E-09 2.7E-13 77.6 2.7 71 11-81 1-79 (83)
299 3j25_A Tetracycline resistance 98.7 7.7E-09 2.6E-13 107.6 3.5 126 200-364 5-133 (638)
300 2kn2_A Calmodulin; S MAPK phos 98.6 8.5E-08 2.9E-12 73.4 8.3 69 11-79 3-73 (92)
301 1s0u_A EIF-2-gamma, translatio 98.6 6.5E-08 2.2E-12 95.3 9.3 68 287-365 82-150 (408)
302 3c5h_A Glucocorticoid receptor 98.6 3.2E-08 1.1E-12 91.2 6.4 50 320-369 162-217 (255)
303 3thx_B DNA mismatch repair pro 98.6 8.4E-09 2.9E-13 110.6 2.7 123 186-360 660-796 (918)
304 1tf7_A KAIC; homohexamer, hexa 98.6 2.3E-10 8E-15 116.5 -9.1 36 186-221 25-65 (525)
305 1j7q_A CAVP, calcium vector pr 98.6 1E-07 3.6E-12 71.9 7.9 71 7-78 4-79 (86)
306 3avx_A Elongation factor TS, e 98.6 2.1E-08 7.3E-13 108.5 5.1 66 287-364 360-426 (1289)
307 3p32_A Probable GTPase RV1496/ 98.6 6.7E-08 2.3E-12 93.5 7.3 64 286-368 172-235 (355)
308 2o8b_B DNA mismatch repair pro 98.6 2.3E-08 7.9E-13 108.7 4.0 141 186-383 769-930 (1022)
309 1wb9_A DNA mismatch repair pro 98.6 5.8E-08 2E-12 103.0 6.6 143 187-385 596-750 (800)
310 1s96_A Guanylate kinase, GMP k 98.5 3.3E-08 1.1E-12 89.0 3.7 28 195-222 14-41 (219)
311 1e69_A Chromosome segregation 98.5 5.5E-08 1.9E-12 92.7 5.4 74 293-382 216-301 (322)
312 3aez_A Pantothenate kinase; tr 98.5 1.9E-09 6.6E-14 102.4 -4.8 107 197-326 90-200 (312)
313 2ohf_A Protein OLA1, GTP-bindi 98.5 7.3E-08 2.5E-12 93.9 6.2 107 197-332 22-128 (396)
314 4fn5_A EF-G 1, elongation fact 98.5 6.4E-08 2.2E-12 102.0 6.1 64 287-364 86-151 (709)
315 1dtl_A Cardiac troponin C; hel 98.5 4.3E-07 1.5E-11 76.4 9.5 73 8-80 9-84 (161)
316 2jnf_A Troponin C; stretch act 98.5 4E-07 1.4E-11 76.4 9.0 75 6-80 2-79 (158)
317 1tiz_A Calmodulin-related prot 98.5 3.4E-07 1.2E-11 65.2 7.3 60 19-78 3-64 (67)
318 3fwb_A Cell division control p 98.5 5.2E-07 1.8E-11 75.7 9.5 74 7-80 13-88 (161)
319 2kz2_A Calmodulin, CAM; TR2C, 98.5 3.6E-07 1.2E-11 70.6 7.7 65 14-78 26-92 (94)
320 2b1u_A Calmodulin-like protein 98.5 9.1E-08 3.1E-12 69.2 4.0 63 15-77 4-68 (71)
321 3ox6_A Calcium-binding protein 98.5 3.3E-07 1.1E-11 76.1 7.8 71 10-80 4-76 (153)
322 1k2h_A S100A1, S-100 protein, 98.5 9.1E-07 3.1E-11 67.6 9.6 73 13-85 5-86 (93)
323 4ds7_A Calmodulin, CAM; protei 98.5 4.6E-07 1.6E-11 74.8 8.3 71 10-80 4-76 (147)
324 2d58_A Allograft inflammatory 98.4 5.6E-07 1.9E-11 71.0 8.1 67 10-77 26-94 (107)
325 3qrx_A Centrin; calcium-bindin 98.4 6.2E-07 2.1E-11 76.1 8.9 73 8-80 19-93 (169)
326 1c7v_A CAVP, calcium vector pr 98.4 1.3E-07 4.3E-12 70.5 3.9 65 13-78 5-72 (81)
327 1k9u_A Polcalcin PHL P 7; poll 98.4 3.1E-07 1.1E-11 67.8 5.9 63 17-79 3-66 (78)
328 3nso_A Protein S100-A3; EF-han 98.4 8.4E-07 2.9E-11 69.6 8.6 72 14-85 7-87 (101)
329 2bl0_C Myosin regulatory light 98.4 4.3E-07 1.5E-11 74.7 7.2 68 12-79 1-70 (142)
330 3mse_B Calcium-dependent prote 98.4 4.8E-07 1.6E-11 78.2 7.8 67 12-78 34-100 (180)
331 2dby_A GTP-binding protein; GD 98.4 1.4E-07 4.9E-12 91.3 4.4 33 199-234 3-35 (368)
332 2lnk_A Protein S100-A4; EF-han 98.4 7.7E-07 2.6E-11 71.3 7.8 79 7-85 12-99 (113)
333 1htw_A HI0065; nucleotide-bind 98.4 1.7E-08 5.9E-13 86.1 -2.0 44 176-221 12-57 (158)
334 2rcn_A Probable GTPase ENGC; Y 98.4 1.2E-07 4.2E-12 91.2 3.7 34 189-222 206-240 (358)
335 3n22_A Protein S100-A2; EF-han 98.4 1.5E-06 5.1E-11 67.8 9.2 72 14-85 8-88 (98)
336 1s6j_A CDPK, calcium-dependent 98.4 6.6E-08 2.2E-12 73.1 1.3 67 10-76 16-84 (87)
337 3li6_A Calcium-binding protein 98.4 3.4E-07 1.1E-11 65.2 5.0 59 20-78 3-63 (66)
338 2f2o_A Calmodulin fused with c 98.4 9.6E-07 3.3E-11 75.7 8.5 71 10-80 4-76 (179)
339 1qv0_A Obelin, OBL; photoprote 98.4 1.5E-06 5.2E-11 75.5 9.8 73 10-82 13-97 (195)
340 1ewq_A DNA mismatch repair pro 98.4 2.7E-07 9.1E-12 97.5 5.6 34 187-221 567-600 (765)
341 3qkt_A DNA double-strand break 98.4 1.9E-07 6.7E-12 89.6 4.1 77 293-378 245-327 (339)
342 4eto_A Protein S100-A4; calciu 98.3 2E-06 6.9E-11 66.3 9.0 72 14-85 7-87 (93)
343 1qls_A S100C protein, calgizza 98.3 1.3E-06 4.6E-11 67.6 7.9 72 11-82 5-87 (99)
344 3zwh_A Protein S100-A4; Ca-bin 98.3 2.3E-06 7.9E-11 67.5 9.2 72 14-85 10-90 (104)
345 1exr_A Calmodulin; high resolu 98.3 1.4E-06 4.8E-11 72.5 8.5 70 10-79 3-74 (148)
346 2aao_A CDPK, calcium-dependent 98.3 1.3E-06 4.6E-11 73.7 8.5 69 10-78 20-90 (166)
347 3rm1_A Protein S100-B; alpha-h 98.3 2.7E-06 9.3E-11 65.3 9.4 71 14-85 6-86 (92)
348 1top_A Troponin C; contractIle 98.3 1E-06 3.6E-11 73.9 7.4 72 10-81 13-86 (162)
349 1k8u_A S100A6, calcyclin, CACY 98.3 1.3E-06 4.3E-11 66.2 6.9 71 14-84 7-84 (90)
350 2ccm_A Calexcitin; EF hand, ca 98.3 4.3E-06 1.5E-10 72.4 10.8 69 12-80 104-172 (191)
351 2kax_A Protein S100-A5; EF-han 98.3 9.2E-07 3.1E-11 68.0 5.7 73 13-85 6-84 (92)
352 1pva_A Parvalbumin; calcium bi 98.3 1.1E-06 3.9E-11 69.2 6.4 68 11-78 36-108 (110)
353 1xk4_A Calgranulin A; S100 fam 98.3 1.1E-06 3.7E-11 67.6 6.1 70 14-83 7-81 (93)
354 5pal_A Parvalbumin; calcium-bi 98.3 1E-06 3.6E-11 69.4 6.0 66 13-78 37-107 (109)
355 1rro_A RAT oncomodulin; calciu 98.3 4.5E-07 1.5E-11 71.4 3.8 65 13-77 37-106 (108)
356 3u0k_A Rcamp; fluorescent prot 98.3 1.8E-06 6E-11 84.1 8.7 70 8-77 293-364 (440)
357 1wlz_A DJBP, CAP-binding prote 98.3 1.9E-06 6.4E-11 67.5 7.4 65 14-78 21-87 (105)
358 2jjz_A Ionized calcium-binding 98.3 3.2E-06 1.1E-10 71.0 9.3 66 13-78 46-113 (150)
359 1s6i_A CDPK, calcium-dependent 98.3 4.8E-07 1.6E-11 79.0 4.3 68 10-77 3-72 (188)
360 2ehv_A Hypothetical protein PH 98.3 1.4E-07 4.8E-12 85.8 0.6 25 195-219 28-52 (251)
361 1nya_A Calerythrin; EF-hand, m 98.3 2.3E-06 7.8E-11 72.9 8.2 70 11-80 1-87 (176)
362 2lmt_A Calmodulin-related prot 98.3 1.2E-06 4.1E-11 73.2 6.2 69 10-78 3-73 (148)
363 1qx2_A Vitamin D-dependent cal 98.3 7.1E-07 2.4E-11 65.3 4.2 64 16-79 4-73 (76)
364 3h4s_E KCBP interacting Ca2+-b 98.3 2.5E-06 8.6E-11 70.3 8.0 66 15-80 38-106 (135)
365 2mys_C Myosin; muscle protein, 98.2 3.4E-06 1.1E-10 69.6 8.8 70 10-80 1-75 (149)
366 2obh_A Centrin-2; DNA repair c 98.2 2E-06 6.8E-11 71.3 7.4 68 12-79 1-70 (143)
367 1wy9_A Allograft inflammatory 98.2 2.9E-06 9.9E-11 71.1 8.2 66 13-78 44-111 (147)
368 1q80_A SCP, sarcoplasmic calci 98.2 4E-06 1.4E-10 71.3 9.2 67 15-81 92-158 (174)
369 3fs7_A Parvalbumin, thymic; ca 98.2 1.1E-06 3.8E-11 69.2 5.2 66 13-78 38-108 (109)
370 1uhk_A Aequorin 2, aequorin; E 98.2 2.8E-06 9.6E-11 73.4 8.3 71 10-80 9-91 (191)
371 1rwy_A Parvalbumin alpha; EF-h 98.2 1.5E-06 5.3E-11 68.3 6.0 66 13-78 37-107 (109)
372 1xk4_C Calgranulin B; S100 fam 98.2 4.8E-06 1.6E-10 66.6 8.9 70 13-82 8-87 (113)
373 2pvb_A Protein (parvalbumin); 98.2 1.3E-06 4.6E-11 68.6 5.5 66 13-78 37-107 (108)
374 1yrb_A ATP(GTP)binding protein 98.2 3.8E-06 1.3E-10 76.9 9.3 74 287-367 110-188 (262)
375 3k21_A PFCDPK3, calcium-depend 98.2 1.9E-06 6.5E-11 75.3 6.8 68 10-77 45-113 (191)
376 1puj_A YLQF, conserved hypothe 98.2 9.2E-07 3.1E-11 82.6 5.0 37 198-236 121-157 (282)
377 1cb1_A Calbindin D9K; calcium- 98.2 4.8E-07 1.6E-11 66.6 2.4 66 14-79 4-75 (78)
378 2lhi_A Calmodulin, serine/thre 98.2 1.3E-06 4.4E-11 75.6 5.5 69 9-77 3-73 (176)
379 2j37_W Signal recognition part 98.2 3.3E-07 1.1E-11 92.2 1.9 69 287-364 185-254 (504)
380 1bu3_A Calcium-binding protein 98.2 1.5E-06 5.3E-11 68.4 5.5 65 13-77 38-107 (109)
381 2w0m_A SSO2452; RECA, SSPF, un 98.2 1.3E-06 4.6E-11 78.1 5.8 25 197-221 23-47 (235)
382 2wcb_A Protein S100-A12; calci 98.2 1.3E-06 4.5E-11 67.6 4.8 74 12-85 7-89 (95)
383 2y5i_A S100Z, S100 calcium bin 98.2 4.2E-06 1.4E-10 65.3 7.8 70 13-82 6-84 (99)
384 3sjs_A URE3-BP sequence specif 98.2 2.2E-06 7.7E-11 76.8 6.9 71 10-80 44-116 (220)
385 3pm8_A PFCDPK2, calcium-depend 98.2 1.2E-06 4.1E-11 77.0 5.0 68 10-77 50-119 (197)
386 3akb_A Putative calcium bindin 98.2 5.1E-06 1.8E-10 69.8 8.7 63 16-78 97-159 (166)
387 2gza_A Type IV secretion syste 98.2 2.5E-06 8.5E-11 82.6 7.4 33 189-221 165-199 (361)
388 1nlf_A Regulatory protein REPA 98.2 2.5E-06 8.5E-11 79.4 7.0 28 194-221 27-54 (279)
389 4a74_A DNA repair and recombin 98.2 9.5E-07 3.3E-11 79.1 4.0 27 196-222 24-50 (231)
390 1j55_A S-100P protein; metal b 98.2 4.1E-06 1.4E-10 64.8 7.1 70 13-82 5-83 (95)
391 2ewv_A Twitching motility prot 98.2 4.7E-06 1.6E-10 80.9 9.0 34 188-221 127-160 (372)
392 2obh_A Centrin-2; DNA repair c 98.2 7.8E-06 2.7E-10 67.6 9.1 62 16-77 78-141 (143)
393 3qrx_A Centrin; calcium-bindin 98.1 7.6E-06 2.6E-10 69.2 9.2 63 16-78 100-164 (169)
394 1exr_A Calmodulin; high resolu 98.1 8.7E-06 3E-10 67.5 9.2 62 17-78 83-146 (148)
395 2bl0_B Myosin regulatory light 98.1 2.7E-06 9.1E-11 70.0 6.0 66 13-78 72-139 (145)
396 2lmt_A Calmodulin-related prot 98.1 3.5E-06 1.2E-10 70.3 6.7 61 17-77 83-145 (148)
397 3ll8_B Calcineurin subunit B t 98.1 1.8E-06 6.1E-11 71.9 4.8 65 12-78 1-65 (155)
398 2ccm_A Calexcitin; EF hand, ca 98.1 5.7E-06 1.9E-10 71.7 8.2 72 9-80 4-93 (191)
399 2bdt_A BH3686; alpha-beta prot 98.1 5.6E-08 1.9E-12 84.9 -4.7 23 199-221 4-26 (189)
400 1top_A Troponin C; contractIle 98.1 8.5E-06 2.9E-10 68.2 9.0 64 15-78 94-159 (162)
401 3nxa_A Protein S100-A16; S100 98.1 1.1E-05 3.7E-10 63.1 8.8 70 14-83 8-87 (100)
402 4drw_A Protein S100-A10/annexi 98.1 5.5E-06 1.9E-10 67.1 7.3 71 14-85 12-89 (121)
403 2mys_C Myosin; muscle protein, 98.1 5.3E-06 1.8E-10 68.4 7.4 65 13-78 81-147 (149)
404 1zu4_A FTSY; GTPase, signal re 98.1 1.2E-05 4.2E-10 76.3 10.6 32 190-221 96-129 (320)
405 1w7j_B Myosin light chain 1; m 98.1 9.1E-07 3.1E-11 73.5 2.4 71 10-80 3-77 (151)
406 2bec_A Calcineurin B homologou 98.1 2E-06 6.9E-11 75.5 4.6 68 10-79 22-89 (202)
407 2sas_A Sarcoplasmic calcium-bi 98.1 4E-06 1.4E-10 71.9 6.3 67 15-81 103-169 (185)
408 2jeo_A Uridine-cytidine kinase 98.1 1.4E-06 4.6E-11 79.6 3.3 36 186-221 12-49 (245)
409 2hpk_A Photoprotein berovin; s 98.1 7.4E-06 2.5E-10 72.2 8.0 63 18-80 129-191 (208)
410 3dm5_A SRP54, signal recogniti 98.1 2.1E-05 7.2E-10 77.6 11.9 71 287-366 184-255 (443)
411 3i5g_B Myosin regulatory light 98.1 1.5E-05 5.2E-10 67.1 9.5 73 6-78 5-112 (153)
412 2sas_A Sarcoplasmic calcium-bi 98.1 8.4E-06 2.9E-10 69.8 8.0 71 11-81 2-90 (185)
413 3j04_B Myosin regulatory light 98.1 4.3E-06 1.5E-10 68.7 5.9 63 16-78 75-139 (143)
414 2v3c_C SRP54, signal recogniti 98.1 8E-06 2.8E-10 80.7 8.6 67 287-364 182-252 (432)
415 1nya_A Calerythrin; EF-hand, m 98.1 7.3E-06 2.5E-10 69.7 7.3 63 16-78 101-163 (176)
416 3ox6_A Calcium-binding protein 98.1 9E-06 3.1E-10 67.2 7.7 62 16-77 87-151 (153)
417 1wdc_C Scallop myosin; calcium 98.1 3E-06 1E-10 70.9 4.7 70 10-80 2-75 (156)
418 2mys_B Myosin; muscle protein, 98.1 8.6E-06 2.9E-10 68.8 7.6 63 16-78 94-158 (166)
419 2ovk_C Myosin catalytic light 98.0 8.4E-06 2.9E-10 68.4 7.3 63 16-78 84-150 (159)
420 3pih_A Uvrabc system protein A 98.0 9.9E-07 3.4E-11 94.5 1.8 94 283-391 446-558 (916)
421 2znd_A Programmed cell death p 98.0 4.8E-06 1.6E-10 71.0 5.8 67 14-80 4-73 (172)
422 3cnl_A YLQF, putative uncharac 98.0 2.4E-06 8.4E-11 78.9 4.2 36 198-235 100-135 (262)
423 2h2k_A Protein S100-A13; calci 98.0 6.9E-06 2.3E-10 65.0 6.2 68 14-81 19-92 (106)
424 3khe_A Calmodulin-like domain 98.0 2.9E-06 9.8E-11 73.4 4.3 67 11-77 34-113 (191)
425 1dtl_A Cardiac troponin C; hel 98.0 3.5E-06 1.2E-10 70.6 4.5 64 15-78 93-158 (161)
426 1alv_A Calpain, S-camld; calci 98.0 1.2E-05 4.1E-10 68.6 7.9 66 14-80 1-76 (173)
427 4ds7_A Calmodulin, CAM; protei 98.0 1.1E-05 3.8E-10 66.2 7.4 62 15-77 82-145 (147)
428 3i5g_C Myosin catalytic light 98.0 1.2E-05 4E-10 68.3 7.7 61 17-77 85-149 (159)
429 3fwb_A Cell division control p 98.0 1.2E-05 4E-10 67.3 7.5 63 16-78 95-159 (161)
430 1m45_A MLC1P, myosin light cha 98.0 7.1E-06 2.4E-10 67.8 6.0 63 16-78 82-146 (148)
431 2lhi_A Calmodulin, serine/thre 98.0 1.1E-05 3.9E-10 69.6 7.4 62 15-77 82-145 (176)
432 3ec2_A DNA replication protein 98.0 2.2E-06 7.6E-11 74.1 2.8 25 197-221 38-62 (180)
433 2f2o_A Calmodulin fused with c 98.0 1.2E-05 4.2E-10 68.7 7.4 62 16-77 83-146 (179)
434 3kl4_A SRP54, signal recogniti 98.0 6.1E-06 2.1E-10 81.4 6.1 71 287-365 181-253 (433)
435 3e3r_A Calcyphosin, calcyphosi 98.0 8.7E-06 3E-10 71.2 6.5 66 12-77 32-99 (204)
436 1j8m_F SRP54, signal recogniti 98.0 1E-05 3.5E-10 76.0 7.1 68 287-364 182-253 (297)
437 2aao_A CDPK, calcium-dependent 98.0 3.9E-06 1.3E-10 70.8 3.8 62 17-78 99-160 (166)
438 2mys_B Myosin; muscle protein, 98.0 2.3E-05 7.9E-10 66.1 8.7 67 9-79 17-86 (166)
439 1wdc_C Scallop myosin; calcium 98.0 9.2E-06 3.1E-10 67.8 6.0 64 15-78 82-149 (156)
440 3khe_A Calmodulin-like domain 98.0 1E-05 3.5E-10 69.9 6.5 64 17-80 123-186 (191)
441 1juo_A Sorcin; calcium-binding 98.0 3.5E-06 1.2E-10 73.9 3.5 69 11-80 27-102 (198)
442 2bl0_C Myosin regulatory light 98.0 8E-06 2.7E-10 66.9 5.5 61 16-77 78-140 (142)
443 1ggw_A Protein (CDC4P); light 98.0 8.5E-06 2.9E-10 66.7 5.6 65 13-78 72-138 (140)
444 2znd_A Programmed cell death p 98.0 2.1E-05 7.1E-10 66.9 8.3 64 17-80 74-139 (172)
445 2bec_A Calcineurin B homologou 98.0 7.9E-06 2.7E-10 71.6 5.6 67 12-78 109-182 (202)
446 2hpk_A Photoprotein berovin; s 98.0 3.9E-06 1.3E-10 74.0 3.6 71 9-79 28-109 (208)
447 2jnf_A Troponin C; stretch act 97.9 9E-06 3.1E-10 67.9 5.7 62 16-77 90-153 (158)
448 1w7j_B Myosin light chain 1; m 97.9 4.2E-06 1.4E-10 69.4 3.5 62 15-77 85-148 (151)
449 1y1x_A Leishmania major homolo 97.9 3.1E-05 1.1E-09 67.4 9.1 64 17-80 93-158 (191)
450 1psr_A Psoriasin, S100A7; EF-h 97.9 1E-05 3.5E-10 63.2 5.2 72 13-85 6-86 (100)
451 1wdc_B Scallop myosin; calcium 97.9 1.7E-05 5.8E-10 66.2 7.0 62 16-78 86-149 (156)
452 2ovk_B RLC, myosin regulatory 97.9 1.5E-05 5.2E-10 66.3 6.6 62 16-78 84-147 (153)
453 3a4u_B Multiple coagulation fa 97.9 7.1E-06 2.4E-10 68.4 4.5 61 17-77 68-142 (143)
454 3i5g_B Myosin regulatory light 97.9 1.1E-05 3.8E-10 68.0 5.6 61 16-77 84-146 (153)
455 2lvv_A Flagellar calcium-bindi 97.9 2E-05 6.8E-10 70.7 7.6 74 17-90 133-209 (226)
456 3euj_A Chromosome partition pr 97.9 2.7E-06 9.4E-11 84.9 2.0 37 187-223 18-55 (483)
457 2bl0_B Myosin regulatory light 97.9 1.6E-05 5.5E-10 65.2 6.4 63 10-78 1-65 (145)
458 3j04_B Myosin regulatory light 97.9 1.9E-05 6.5E-10 64.7 6.8 65 11-79 1-67 (143)
459 3mse_B Calcium-dependent prote 97.9 1.5E-05 5.1E-10 68.6 6.4 62 17-78 108-177 (180)
460 1snl_A Nucleobindin 1, calnuc; 97.9 9E-06 3.1E-10 63.6 4.5 60 18-77 21-98 (103)
461 2kjq_A DNAA-related protein; s 97.9 1.9E-05 6.5E-10 66.3 6.8 25 197-221 36-60 (149)
462 1a4p_A S100A10; S100 family, E 97.9 2E-05 6.9E-10 61.0 6.4 68 13-81 5-79 (96)
463 1f5n_A Interferon-induced guan 97.9 3.1E-05 1.1E-09 79.2 9.6 24 199-222 40-63 (592)
464 3ll8_B Calcineurin subunit B t 97.9 3E-05 1E-09 64.3 7.9 67 14-80 72-145 (155)
465 1y1x_A Leishmania major homolo 97.9 2E-05 7E-10 68.5 6.9 70 9-80 21-92 (191)
466 3lnc_A Guanylate kinase, GMP k 97.9 4.1E-06 1.4E-10 75.5 2.4 36 186-221 14-52 (231)
467 3dtp_E RLC, myosin regulatory 97.9 1.2E-05 4E-10 70.5 5.2 62 16-78 125-188 (196)
468 3k21_A PFCDPK3, calcium-depend 97.9 2.7E-05 9.1E-10 67.9 7.4 63 16-78 121-190 (191)
469 3pm8_A PFCDPK2, calcium-depend 97.8 1.1E-05 3.9E-10 70.7 4.8 63 16-78 128-194 (197)
470 1qv0_A Obelin, OBL; photoprote 97.8 2.5E-05 8.4E-10 67.7 6.8 60 21-80 117-178 (195)
471 2ovk_C Myosin catalytic light 97.8 8.8E-06 3E-10 68.2 3.7 69 10-79 2-74 (159)
472 3sg6_A Gcamp2, myosin light ch 97.8 3.2E-05 1.1E-09 76.5 8.2 70 9-78 304-375 (450)
473 1wdc_B Scallop myosin; calcium 97.8 5.1E-05 1.8E-09 63.2 8.4 67 9-79 10-78 (156)
474 1uhk_A Aequorin 2, aequorin; E 97.8 3.1E-05 1.1E-09 66.7 7.2 61 20-80 112-174 (191)
475 3a8r_A Putative uncharacterize 97.8 2.3E-05 8E-10 67.7 6.4 64 15-78 96-169 (179)
476 2r6f_A Excinuclease ABC subuni 97.8 6.9E-06 2.4E-10 87.8 3.4 93 284-391 487-598 (972)
477 2kyc_A Parvalbumin-3, parvalbu 97.8 7.7E-07 2.6E-11 70.0 -3.0 64 15-78 39-107 (108)
478 3sjs_A URE3-BP sequence specif 97.8 4.1E-05 1.4E-09 68.4 7.8 65 17-82 117-183 (220)
479 2lvv_A Flagellar calcium-bindi 97.8 3E-05 1E-09 69.6 6.8 71 10-80 44-126 (226)
480 2qac_A Myosin A tail domain in 97.8 4.3E-05 1.5E-09 62.9 7.2 60 16-77 83-144 (146)
481 1jba_A GCAP-2, protein (guanyl 97.8 4.6E-05 1.6E-09 66.8 7.8 70 11-80 16-88 (204)
482 3tr0_A Guanylate kinase, GMP k 97.8 9.2E-06 3.2E-10 71.4 3.3 25 197-221 7-31 (205)
483 1jfj_A Ehcabp, calcium-binding 97.8 2.1E-05 7.2E-10 63.2 5.2 60 19-78 2-63 (134)
484 3q5i_A Protein kinase; CDPK, m 97.8 3E-05 1E-09 78.1 7.4 68 11-78 349-426 (504)
485 1vma_A Cell division protein F 97.8 1.8E-05 6.2E-10 74.6 5.3 23 199-221 106-128 (306)
486 1m45_A MLC1P, myosin light cha 97.8 4.5E-06 1.5E-10 69.0 0.9 65 16-80 3-70 (148)
487 2ehb_A Calcineurin B-like prot 97.7 4.9E-05 1.7E-09 66.7 7.2 70 10-79 30-102 (207)
488 2ct9_A Calcium-binding protein 97.7 4E-05 1.4E-09 67.5 6.5 63 15-77 111-180 (208)
489 1jfj_A Ehcabp, calcium-binding 97.7 3.6E-05 1.2E-09 61.8 5.7 56 19-76 77-132 (134)
490 2l2e_A Calcium-binding protein 97.7 0.00011 3.7E-09 63.3 9.1 63 16-78 98-174 (190)
491 1s6i_A CDPK, calcium-dependent 97.7 6.6E-06 2.3E-10 71.6 1.2 61 18-78 83-143 (188)
492 3dtp_E RLC, myosin regulatory 97.7 7.3E-05 2.5E-09 65.3 7.9 68 8-79 48-117 (196)
493 2ovk_B RLC, myosin regulatory 97.7 4.5E-05 1.5E-09 63.3 6.1 67 7-77 6-74 (153)
494 1gjy_A Sorcin, CP-22, V19; cal 97.7 8.8E-05 3E-09 62.7 8.1 59 22-80 6-71 (167)
495 2zfd_A Calcineurin B-like prot 97.7 7.6E-05 2.6E-09 66.7 7.7 70 10-79 41-113 (226)
496 1lvg_A Guanylate kinase, GMP k 97.7 1.3E-05 4.5E-10 70.5 2.6 24 198-221 5-28 (198)
497 3a00_A Guanylate kinase, GMP k 97.7 1.4E-05 4.6E-10 69.6 2.6 24 199-222 3-26 (186)
498 2ffh_A Protein (FFH); SRP54, s 97.7 4.6E-05 1.6E-09 75.0 6.6 31 190-221 91-122 (425)
499 2f33_A Calbindin; EF-hand, Ca2 97.7 2E-05 6.9E-10 71.6 3.9 69 9-77 8-84 (263)
500 1dgu_A Calcium-saturated CIB; 97.7 5.9E-05 2E-09 64.8 6.6 70 9-80 12-90 (183)
No 1
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=99.94 E-value=2.3e-27 Score=192.58 Aligned_cols=99 Identities=29% Similarity=0.361 Sum_probs=89.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 016165 4 GTGPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (394)
Q Consensus 4 ~~~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~ 83 (394)
++...|.+|++|+++|+++|..+|+ ++|+|+|++++++|++||||+++|++||+++|.|++|+||++||++||+||..+
T Consensus 20 g~~~~W~it~ee~~~y~~iF~~lD~-~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~~~ 98 (121)
T 3fia_A 20 GSLDTWAITVEERAKHDQQFHSLKP-ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLK 98 (121)
T ss_dssp CCTTTSCCCHHHHHHHHHHHHHTCC-BTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccCCCCccCCCCCC
Q 016165 84 QDGHQVTHDLWNSDVDFQNLK 104 (394)
Q Consensus 84 ~~g~~~~~~l~~~~~~~~~~~ 104 (394)
++|.++|..||+ .+.+.++.
T Consensus 99 ~~G~~lP~~LP~-~l~~~~~~ 118 (121)
T 3fia_A 99 LQGYQLPSALPP-VMKQQPVA 118 (121)
T ss_dssp HTTCCCCSSCCG-GGC-----
T ss_pred HcCCCCCCCCCH-HHHcCCCc
Confidence 999999999998 44444443
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=1.8e-25 Score=217.35 Aligned_cols=192 Identities=18% Similarity=0.246 Sum_probs=151.8
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI--- 248 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~--- 248 (394)
--++++.|++ ..++++++|++.. +++|+||||||||||+|+|+|... |..++ +.+.+++....
T Consensus 6 ~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--------p~~G~--I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 6 LQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--------ITSGD--LFIGEKRMNDTPPA 73 (381)
T ss_dssp EEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--------CSEEE--EEETTEECTTCCGG
T ss_pred EEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--------CCCeE--EEECCEECCCCCHH
Confidence 3466778887 6699999999887 999999999999999999999993 44444 33444433221
Q ss_pred -CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 249 -PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 249 -~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.+..+++|....++.++..++..+. ..+..+++.++++.+++.+ .|..+| ||+||++ |||
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVa-------iAr 146 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVA-------IGR 146 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHH-------HHH
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHH-------HHH
Confidence 3456677777777777777776322 2244566778888888865 788999 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
+++.+|+++|+ .+|+.. ..++.++|++++++ +.++|+|+ |+.+++..+ |++++|++|+++..+.+
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~---~~~l~~~l~~l~~~~g~tii~vT-----Hd~~ea~~~aDri~vl~~G~i~~~g~~ 218 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAAL---RVQMRIEISRLHKRLGRTMIYVT-----HDQVEAMTLADKIVVLDAGRVAQVGKP 218 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHHHCCEEEEEC-----SCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHcCCCEEEEECCCcCCCHHH---HHHHHHHHHHHHHhCCCEEEEEE-----CCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 99999999999 778765 77888899988654 88999998 889999887 99999999999998887
Q ss_pred ceee
Q 016165 389 VRVY 392 (394)
Q Consensus 389 ~~v~ 392 (394)
.++|
T Consensus 219 ~~l~ 222 (381)
T 3rlf_A 219 LELY 222 (381)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.91 E-value=2.2e-25 Score=215.45 Aligned_cols=195 Identities=22% Similarity=0.274 Sum_probs=152.4
Q ss_pred CceeeeeecCC--cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc--
Q 016165 174 PLEVTYRFNDF--VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-- 247 (394)
Q Consensus 174 ~l~~~~~~~~~--~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-- 247 (394)
--++++.|+.. ...+++++||++.+ +++|+||||||||||+++|+|.. .|..++ +.+.+++...
T Consensus 27 v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~--------~p~~G~--I~i~G~~i~~~~ 96 (366)
T 3tui_C 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--------RPTEGS--VLVDGQELTTLS 96 (366)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS--------CCSEEE--EEETTEECSSCC
T ss_pred EEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC--------CCCceE--EEECCEECCcCC
Confidence 34566677532 13589999999887 99999999999999999999999 344444 4445544322
Q ss_pred -------cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhccc
Q 016165 248 -------IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 -------~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~ 308 (394)
.....+++|....+..++..++..+. ..+..+++.++++.+++.+ .|+.+| ||+||++
T Consensus 97 ~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVa--- 173 (366)
T 3tui_C 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVA--- 173 (366)
T ss_dssp HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHH---
T ss_pred HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH---
Confidence 13456677777666677777665322 2244566788888888866 789999 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
|||+++.+|+++|+ .+|+.. +..++++|+.+++ .|.++++|+ |+.+.+..+ |++++|++|+
T Consensus 174 ----IArAL~~~P~lLLlDEPTs~LD~~~---~~~i~~lL~~l~~~~g~Tii~vT-----Hdl~~~~~~aDrv~vl~~G~ 241 (366)
T 3tui_C 174 ----IARALASNPKVLLCDQATSALDPAT---TRSILELLKDINRRLGLTILLIT-----HEMDVVKRICDCVAVISNGE 241 (366)
T ss_dssp ----HHHHTTTCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHHSCCEEEEEE-----SCHHHHHHHCSEEEEEETTE
T ss_pred ----HHHHHhcCCCEEEEECCCccCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----cCHHHHHHhCCEEEEEECCE
Confidence 99999999999999 788876 8889999999865 488999998 889998887 9999999999
Q ss_pred eeecCccceeec
Q 016165 382 VLNTPEVVRVYI 393 (394)
Q Consensus 382 i~~~~~~~~v~~ 393 (394)
++..|.+.++|.
T Consensus 242 iv~~g~~~ev~~ 253 (366)
T 3tui_C 242 LIEQDTVSEVFS 253 (366)
T ss_dssp EEECCBHHHHHS
T ss_pred EEEEcCHHHHHh
Confidence 999988877653
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.90 E-value=4.2e-25 Score=213.39 Aligned_cols=192 Identities=21% Similarity=0.324 Sum_probs=148.1
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcc----c-
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD----R- 246 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~----~- 246 (394)
--++++.|++ ..++++++|++.. +++|+||||||||||+|+|+|... |..++ +.+.+++. .
T Consensus 7 i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--------p~~G~--I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 7 IGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--------PDSGE--ISLSGKTIFSKNTN 74 (359)
T ss_dssp EEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--------CSEEE--EEETTEEEESSSCB
T ss_pred EEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--------CCCcE--EEECCEECcccccc
Confidence 3466778887 6699999999887 999999999999999999999994 44444 33333322 1
Q ss_pred ---ccCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChH
Q 016165 247 ---SIPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (394)
Q Consensus 247 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~ 311 (394)
......+++|....+..++..++..+. ..+..+++.++++.+++.+ .|+.+| ||+|||+
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRVa------ 148 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAA------ 148 (359)
T ss_dssp CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHH------
T ss_pred cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH------
Confidence 123566677777777777777766321 2244556778888888865 688999 9999999
Q ss_pred HHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHH-hcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSL-RGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 312 ~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l-~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+||+++.+|+++|+ ++|+.. ..++.+.+..+ ++.+.++|+|+ |+.+++..+ |++++|++|+++.
T Consensus 149 -lArAL~~~P~lLLLDEPts~LD~~~---r~~l~~~l~~~~~~~g~tvi~vT-----Hd~~ea~~~aDri~vl~~G~i~~ 219 (359)
T 3fvq_A 149 -LARALAPDPELILLDEPFSALDEQL---RRQIREDMIAALRANGKSAVFVS-----HDREEALQYADRIAVMKQGRILQ 219 (359)
T ss_dssp -HHHHHTTCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHHTTCEEEEEC-----CCHHHHHHHCSEEEEEETTEEEE
T ss_pred -HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHHCCEEEEEECCEEEE
Confidence 99999999999999 788765 66777656555 45688999998 889998887 9999999999999
Q ss_pred cCccceee
Q 016165 385 TPEVVRVY 392 (394)
Q Consensus 385 ~~~~~~v~ 392 (394)
.+.+.++|
T Consensus 220 ~g~~~el~ 227 (359)
T 3fvq_A 220 TASPHELY 227 (359)
T ss_dssp EECHHHHH
T ss_pred EeCHHHHH
Confidence 88877765
No 5
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.89 E-value=1.6e-24 Score=209.82 Aligned_cols=191 Identities=19% Similarity=0.242 Sum_probs=147.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----I 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~ 248 (394)
-++++.|++ ..++++++|++.. +++|+||||||||||+++|+|... |..++ +.+.+++... .
T Consensus 7 ~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--------p~~G~--I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 7 VNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--------PTSGE--IYFDDVLVNDIPPKY 74 (359)
T ss_dssp EEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--------CSEEE--EEETTEECTTSCGGG
T ss_pred EEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--------CCccE--EEECCEECCCCChhh
Confidence 356778876 5699999999877 999999999999999999999993 44444 3334433221 1
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....+++|....+..++..++..+. ..+..+.+.++++.+++.+ .|+.+| ||+||++ +||+
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRva-------lArA 147 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVA-------LARA 147 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-------HHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHH
Confidence 2455667766666677766665221 1123445677888888865 688899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ .+|+.. ...+.++++.+.++ +.++|+|+ |+.+++..+ |++++|++|+++..+.+.
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tvi~vT-----Hd~~~~~~~adri~vl~~G~i~~~g~~~ 219 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANL---RMIMRAEIKHLQQELGITSVYVT-----HDQAEAMTMASRIAVFNQGKLVQYGTPD 219 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHHHCCEEEEEE-----SCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHcCCCEEEEECCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEc-----CCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999 788765 77888888888654 88899998 888888887 999999999999888776
Q ss_pred eee
Q 016165 390 RVY 392 (394)
Q Consensus 390 ~v~ 392 (394)
++|
T Consensus 220 ~l~ 222 (359)
T 2yyz_A 220 EVY 222 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.7e-24 Score=209.93 Aligned_cols=191 Identities=17% Similarity=0.233 Sum_probs=148.4
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----c
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----I 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~ 248 (394)
-++++.|++ ..++++++|++.. +++|+||||||||||+|+|+|... |..++ +.+.+++... .
T Consensus 7 ~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--------p~~G~--I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 7 ENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--------PTSGK--IYFDEKDVTELPPKD 74 (362)
T ss_dssp EEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--------CSEEE--EEETTEECTTSCGGG
T ss_pred EeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--------CCceE--EEECCEECCcCCHhH
Confidence 356778876 5699999999877 999999999999999999999993 44444 3334433221 1
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....+++|....+..++..++..+. ..+..+.+.++++.+++.+ .|+.+| ||+||++ +||+
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva-------lArA 147 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVA-------IARA 147 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHH-------HHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHH-------HHHH
Confidence 2456677776667777777766321 1233456778888888865 688899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ .+|+.. ..++.++|+.+.++ +.++|+|+ |+.+++..+ |++++|++|+++..+.+.
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tvi~vT-----Hd~~~a~~~adri~vl~~G~i~~~g~~~ 219 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALL---RLEVRAELKRLQKELGITTVYVT-----HDQAEALAMADRIAVIREGEILQVGTPD 219 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHH---HHHHHHHHHHHHHHHTCEEEEEE-----SCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHcCCCEEEEECccccCCHHH---HHHHHHHHHHHHHhCCCEEEEEC-----CCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999 888876 78888999888654 88999998 888888887 999999999999887776
Q ss_pred eee
Q 016165 390 RVY 392 (394)
Q Consensus 390 ~v~ 392 (394)
++|
T Consensus 220 ~~~ 222 (362)
T 2it1_A 220 EVY 222 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=1.6e-24 Score=209.41 Aligned_cols=191 Identities=21% Similarity=0.285 Sum_probs=147.4
Q ss_pred ceeeeee-cCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----
Q 016165 175 LEVTYRF-NDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS---- 247 (394)
Q Consensus 175 l~~~~~~-~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~---- 247 (394)
-++++.| ++ ..++++++|++.. +++|+||||||||||+|+|+|... |..++ +.+.+.+...
T Consensus 18 ~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--------p~~G~--I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 18 VGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--------PTKGD--VWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--------CSEEE--EEETTEECTTCCGG
T ss_pred EEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--------CCccE--EEECCEECCcCChh
Confidence 4566788 65 5699999999877 999999999999999999999993 44444 3334433211
Q ss_pred cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 248 IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.....+++|....+..++..++..+. ..+..+.+.++++.+++.+ .|+.+| ||+||++ +||
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRva-------lAr 158 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVA-------LAR 158 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-------HHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH-------HHH
Confidence 12455667776667777777766321 1233456778888888865 688899 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
+++.+|+++|+ .+|+.. ..++.++|+.+.++ +.++|+|+ |+.+++..+ |++++|++|+++..+.+
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tvi~vT-----Hd~~~a~~~adri~vl~~G~i~~~g~~ 230 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQI---RRELRTFVRQVHDEMGVTSVFVT-----HDQEEALEVADRVLVLHEGNVEQFGTP 230 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHH---HHHHHHHHHHHHHHHTCEEEEEC-----SCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEC-----CCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999 788765 78888889888654 88888888 889898887 99999999999988777
Q ss_pred ceee
Q 016165 389 VRVY 392 (394)
Q Consensus 389 ~~v~ 392 (394)
.++|
T Consensus 231 ~~l~ 234 (355)
T 1z47_A 231 EEVY 234 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 8
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.89 E-value=1.9e-24 Score=209.30 Aligned_cols=191 Identities=18% Similarity=0.240 Sum_probs=147.7
Q ss_pred ceeeeeecCCcCc--ccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc----
Q 016165 175 LEVTYRFNDFVSP--LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---- 246 (394)
Q Consensus 175 l~~~~~~~~~~~~--~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---- 246 (394)
-++++.|++ .. ++++++|++.. +++|+||||||||||+|+|+|... |..++ +.+.+++..
T Consensus 7 ~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--------p~~G~--I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 7 KNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--------PSTGE--LYFDDRLVASNGK 74 (353)
T ss_dssp EEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--------CSEEE--EEETTEEEEETTE
T ss_pred EeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--------CCceE--EEECCEECccccc
Confidence 356778876 56 89999999877 999999999999999999999994 43443 222332211
Q ss_pred -----ccCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccC
Q 016165 247 -----SIPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 247 -----~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~ 309 (394)
......+++|....+..++..++..+. ..+..+.+.++++.+++.+ .|+.+| ||+||++
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva---- 150 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA---- 150 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH----
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH----
Confidence 123456677777667777776665221 1233456778888888865 688899 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ .+|+.. ..++.++|+.+.++ +.++|+|+ |+.+++..+ |+++++++|++
T Consensus 151 ---lAraL~~~P~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tvi~vT-----Hd~~~~~~~adri~vl~~G~i 219 (353)
T 1oxx_K 151 ---LARALVKDPSLLLLDEPFSNLDARM---RDSARALVKEVQSRLGVTLLVVS-----HDPADIFAIADRVGVLVKGKL 219 (353)
T ss_dssp ---HHHHHTTCCSEEEEESTTTTSCGGG---HHHHHHHHHHHHHHHCCEEEEEE-----SCHHHHHHHCSEEEEEETTEE
T ss_pred ---HHHHHHhCCCEEEEECCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999 888876 88889999988654 88999998 888888887 99999999999
Q ss_pred eecCccceee
Q 016165 383 LNTPEVVRVY 392 (394)
Q Consensus 383 ~~~~~~~~v~ 392 (394)
+..+.+.++|
T Consensus 220 ~~~g~~~~l~ 229 (353)
T 1oxx_K 220 VQVGKPEDLY 229 (353)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9887776665
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.89 E-value=2.3e-24 Score=200.81 Aligned_cols=192 Identities=19% Similarity=0.276 Sum_probs=143.0
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--c-
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--S- 247 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--~- 247 (394)
+--++++.|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+.. .
T Consensus 26 ~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--------p~~G~--I~~~g~~i~~~~~ 93 (263)
T 2olj_A 26 DVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--------FDEGE--IIIDGINLKAKDT 93 (263)
T ss_dssp EEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEESSSTTC
T ss_pred EEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--------CCCcE--EEECCEECCCccc
Confidence 34466778876 5699999999877 999999999999999999999983 43443 333443321 0
Q ss_pred -----cCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccC
Q 016165 248 -----IPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 248 -----~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~ 309 (394)
.....+++|....+..++..++..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~---- 169 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA---- 169 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH----
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH----
Confidence 01234555655555555655554221 1123345667788888765 678899 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ ++|+.. ...+.++++++.+++.++|+++ |+.+.+..+ |+++++++|+++
T Consensus 170 ---lAraL~~~p~lllLDEPts~LD~~~---~~~~~~~l~~l~~~g~tvi~vt-----Hd~~~~~~~~d~v~~l~~G~i~ 238 (263)
T 2olj_A 170 ---IARALAMEPKIMLFDEPTSALDPEM---VGEVLSVMKQLANEGMTMVVVT-----HEMGFAREVGDRVLFMDGGYII 238 (263)
T ss_dssp ---HHHHHTTCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHTTCEEEEEC-----SCHHHHHHHCSEEEEEETTEEE
T ss_pred ---HHHHHHCCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEc-----CCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999 788876 7888999999877788888888 888888877 999999999998
Q ss_pred ecCcccee
Q 016165 384 NTPEVVRV 391 (394)
Q Consensus 384 ~~~~~~~v 391 (394)
..+.+.++
T Consensus 239 ~~g~~~~~ 246 (263)
T 2olj_A 239 EEGKPEDL 246 (263)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 77665544
No 10
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.89 E-value=2.4e-24 Score=209.56 Aligned_cols=191 Identities=20% Similarity=0.273 Sum_probs=143.1
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|++ ..++++++|++.. +++|+||||||||||+++|+|... |..++ +.+.+++....
T Consensus 15 ~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--------p~~G~--I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 15 ENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--------PTEGR--IYFGDRDVTYLPPKD 82 (372)
T ss_dssp EEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--------CSEEE--EEETTEECTTSCGGG
T ss_pred EEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--------CCceE--EEECCEECCCCChhh
Confidence 356778876 5699999999877 999999999999999999999993 44444 33344332211
Q ss_pred CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
....+++|....+..++..++..+. ..+..+.+.++++.+++.+ .|+.+| ||+||++ +||+
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva-------lArA 155 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA-------VARA 155 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHH-------HHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHH
Confidence 2455666766666666666665221 1233455777888888865 789999 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVV 389 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~ 389 (394)
++.+|+++|+ .+|+.. ..++.++|+.+.++ +.++|+|+ |+.+++..+ |++++|++|+++..+.+.
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tvi~vT-----Hd~~~a~~~adri~vl~~G~i~~~g~~~ 227 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKL---RVAMRAEIKKLQQKLKVTTIYVT-----HDQVEAMTMGDRIAVMNRGQLLQIGSPT 227 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHHHTCEEEEEE-----SCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999 788765 78888889888654 88899998 888888887 999999999999887776
Q ss_pred eee
Q 016165 390 RVY 392 (394)
Q Consensus 390 ~v~ 392 (394)
++|
T Consensus 228 ~l~ 230 (372)
T 1v43_A 228 EVY 230 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.89 E-value=1.8e-24 Score=198.50 Aligned_cols=191 Identities=19% Similarity=0.204 Sum_probs=139.0
Q ss_pred eeeeeecCCc--CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC--
Q 016165 176 EVTYRFNDFV--SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP-- 249 (394)
Q Consensus 176 ~~~~~~~~~~--~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~-- 249 (394)
++++.|++.. ..++++++|++.+ +++|+||||||||||+++|+|... |..+. +.+.+.+.....
T Consensus 6 ~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--------p~~G~--I~~~g~~~~~~~~~ 75 (235)
T 3tif_A 6 NVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--------PTEGE--VYIDNIKTNDLDDD 75 (235)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEECTTCCHH
T ss_pred EEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--------CCceE--EEECCEEcccCCHH
Confidence 4566775321 3589999999887 999999999999999999999993 44444 344444332211
Q ss_pred --------CceeeeccCCCCCcccccccccch----------hhhhhcCCccccccceeec-----CCCCCc-hhhhhhh
Q 016165 250 --------GNTVAVQADMPFSGLTTFGTAFLS----------KFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQ 305 (394)
Q Consensus 250 --------~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~D-----t~g~ls-Ge~qrv~ 305 (394)
...+++|....+.+++..++..+. ..+..+.+.++++.+++.+ .|+.+| ||+||+.
T Consensus 76 ~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 245566666666666666554221 1233445667777777754 578899 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHHHhHhhhcc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRVYGALMWSL 379 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~ 379 (394)
+||+++.+|+++|+ .+|+.. ...+.+++++++++ +.++|+++ |+.+....+|+++++++
T Consensus 156 -------iAral~~~p~llllDEPts~LD~~~---~~~i~~~l~~l~~~~g~tvi~vt-----Hd~~~~~~~d~i~~l~~ 220 (235)
T 3tif_A 156 -------IARALANNPPIILADQPTWALDSKT---GEKIMQLLKKLNEEDGKTVVVVT-----HDINVARFGERIIYLKD 220 (235)
T ss_dssp -------HHHHHTTCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHHHCCEEEEEC-----SCHHHHTTSSEEEEEET
T ss_pred -------HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEc-----CCHHHHHhCCEEEEEEC
Confidence 99999999999999 788876 78889999998764 88888888 77765432399999999
Q ss_pred ceeeecCcccee
Q 016165 380 GKVLNTPEVVRV 391 (394)
Q Consensus 380 G~i~~~~~~~~v 391 (394)
|+++..+.+.++
T Consensus 221 G~i~~~~~~~~~ 232 (235)
T 3tif_A 221 GEVEREEKLRGF 232 (235)
T ss_dssp TEEEEEEECC--
T ss_pred CEEEEEcChhhh
Confidence 999987766554
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=4.5e-24 Score=196.53 Aligned_cols=190 Identities=16% Similarity=0.229 Sum_probs=140.7
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
-++++.|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+...
T Consensus 10 ~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 10 QSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--------AQKGK--IIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEECTTCCHHH
T ss_pred EeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCce--EEECCEECCCCCHHH
Confidence 456778876 5699999999877 999999999999999999999983 44444 3334433211
Q ss_pred --cCCceeeeccCCCCCcccccccccchh------hhhhcCCccccccce-eec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLSK------FECSQMPHSLLEHIT-LVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~~-l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
..+..+++|....+.+++..++..+.. ....+.+.++++.++ +.+ .++.+| ||+||+. +
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~-------l 150 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLA-------I 150 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHH-------H
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHH-------H
Confidence 123555666665566666665552211 122333455666663 643 678899 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
||+++.+|+++|+ ++|+.. ...+.++++.+++.+.++|+++ |+.+++..+ |+++++++|+++..+.
T Consensus 151 AraL~~~p~lllLDEPts~LD~~~---~~~l~~~l~~~~~~g~tvi~vt-----Hd~~~~~~~~d~v~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 151 GRALMSRPKLLMMDEPSLGLAPIL---VSEVFEVIQKINQEGTTILLVE-----QNALGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHH---HHHHHHHHHHHHHTTCCEEEEE-----SCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----cCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999 788876 7888899999876788888888 888888777 9999999999987665
Q ss_pred ccee
Q 016165 388 VVRV 391 (394)
Q Consensus 388 ~~~v 391 (394)
+.++
T Consensus 223 ~~~~ 226 (240)
T 1ji0_A 223 ASEL 226 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.89 E-value=1.6e-24 Score=202.05 Aligned_cols=192 Identities=19% Similarity=0.313 Sum_probs=142.7
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc----
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---- 246 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---- 246 (394)
+--++++.|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+..
T Consensus 8 ~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--------p~~G~--i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 8 HVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--------PSEGA--IIVNGQNINLVRD 75 (262)
T ss_dssp EEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEECCEEEC
T ss_pred EEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCcE--EEECCEEcccccc
Confidence 33466778876 5699999999887 999999999999999999999983 43444 333333221
Q ss_pred ---------------ccCCceeeeccCCCCCcccccccccch--------hhhhhcCCccccccceeec-----CCCCCc
Q 016165 247 ---------------SIPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITLVD-----TPGVLS 298 (394)
Q Consensus 247 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~l~D-----t~g~ls 298 (394)
......+++|....+..++...+..+. ..+..+.+.++++.+++.+ .++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS 155 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCC
Confidence 011244556665555666665555221 1122345667788887743 578899
Q ss_pred -hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-
Q 016165 299 -GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV- 371 (394)
Q Consensus 299 -Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~- 371 (394)
||+||+. +||+++.+|+++|+ ++|+.. ...+.++++.+++++.++|+++ |+.+.+..+
T Consensus 156 gGq~qRv~-------lAraL~~~p~lllLDEPts~LD~~~---~~~~~~~l~~l~~~g~tvi~vt-----Hd~~~~~~~~ 220 (262)
T 1b0u_A 156 GGQQQRVS-------IARALAMEPDVLLFDEPTSALDPEL---VGEVLRIMQQLAEEGKTMVVVT-----HEMGFARHVS 220 (262)
T ss_dssp HHHHHHHH-------HHHHHHTCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHTTCCEEEEC-----SCHHHHHHHC
T ss_pred HHHHHHHH-------HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhC
Confidence 9999999 99999999999999 788876 7888899999877788888888 888888877
Q ss_pred HhHhhhccceeeecCcccee
Q 016165 372 YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 372 ~~~~~~~~G~i~~~~~~~~v 391 (394)
|+++++++|+++..+.+.++
T Consensus 221 d~v~~l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 221 SHVIFLHQGKIEEEGDPEQV 240 (262)
T ss_dssp SEEEEEETTEEEEEECHHHH
T ss_pred CEEEEEECCEEEEeCCHHHH
Confidence 99999999999987766554
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.89 E-value=2.5e-24 Score=201.04 Aligned_cols=193 Identities=18% Similarity=0.203 Sum_probs=141.3
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC-
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP- 249 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~- 249 (394)
+..++++.|++ ..++++++|++.+ +++|+||||||||||+|+|+|... |..+. +.+.+++....+
T Consensus 13 ~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--------p~~G~--I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 13 EASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--------PSHGE--CHLLGQNLNSWQP 80 (266)
T ss_dssp EEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--------CSSCE--EEETTEETTTSCH
T ss_pred EEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--------CCCcE--EEECCEECCcCCH
Confidence 33466778887 6799999999887 999999999999999999999984 44444 344444332211
Q ss_pred -----CceeeeccCCCCCcccccccccch-----hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHH
Q 016165 250 -----GNTVAVQADMPFSGLTTFGTAFLS-----KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (394)
Q Consensus 250 -----~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~ia 314 (394)
...+.++....+...+..++..+. .....+.+.++++.+++.+ .++.+| ||+||+. +|
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~-------iA 153 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQ-------LA 153 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHH-------HH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH-------HH
Confidence 123344444333344444444221 1223445667777777765 577889 9999999 99
Q ss_pred HHHhh------cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 315 SWFAA------KCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 315 ral~~------~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
|+++. +|+++|+ ++|+.. ...+.++++.++++ ++++|+++ |+.+.+..+ |+++++++|+
T Consensus 154 raL~~~~~~~~~p~lLllDEPts~LD~~~---~~~i~~~l~~l~~~~~~tvi~vt-----Hdl~~~~~~~d~v~vl~~G~ 225 (266)
T 4g1u_C 154 RVLAQLWQPQPTPRWLFLDEPTSALDLYH---QQHTLRLLRQLTRQEPLAVCCVL-----HDLNLAALYADRIMLLAQGK 225 (266)
T ss_dssp HHHHHTCCSSCCCEEEEECCCCSSCCHHH---HHHHHHHHHHHHHHSSEEEEEEC-----SCHHHHHHHCSEEEEEETTE
T ss_pred HHHhcccccCCCCCEEEEeCccccCCHHH---HHHHHHHHHHHHHcCCCEEEEEE-----cCHHHHHHhCCEEEEEECCE
Confidence 99999 9999999 788876 78889999998765 45777777 889898887 9999999999
Q ss_pred eeecCccceee
Q 016165 382 VLNTPEVVRVY 392 (394)
Q Consensus 382 i~~~~~~~~v~ 392 (394)
++..+.+.+++
T Consensus 226 i~~~g~~~~~~ 236 (266)
T 4g1u_C 226 LVACGTPEEVL 236 (266)
T ss_dssp EEEEECHHHHC
T ss_pred EEEEcCHHHHh
Confidence 99887766554
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.89 E-value=3e-24 Score=209.20 Aligned_cols=191 Identities=17% Similarity=0.231 Sum_probs=146.8
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc------
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------ 246 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~------ 246 (394)
-++++.|++ ..++++++|++.. +++|+||||||||||+|+|+|... |..++ +.+.+.+..
T Consensus 7 ~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--------p~~G~--I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 7 VDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--------PSRGQ--IYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--------CSEEE--EEETTEEEEEGGGTE
T ss_pred EeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--------CCccE--EEECCEECccccccc
Confidence 356778876 5699999999877 999999999999999999999994 43443 222332211
Q ss_pred ----ccCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 247 ----SIPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 247 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
......+++|....+..++..++..+. ..+..+.+.++++.+++.+ .|+.+| ||+||++
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva----- 149 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA----- 149 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHH-----
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHH-----
Confidence 113456677776667777777766321 1233456778888888865 688899 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ .+|+.. ..++.++|+++.++ +.++|+|+ |+.+++..+ |++++|++|+++
T Consensus 150 --lArAL~~~P~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tvi~vT-----Hd~~~a~~~adri~vl~~G~i~ 219 (372)
T 1g29_1 150 --LGRAIVRKPQVFLMDEPLSNLDAKL---RVRMRAELKKLQRQLGVTTIYVT-----HDQVEAMTMGDRIAVMNRGVLQ 219 (372)
T ss_dssp --HHHHHHTCCSEEEEECTTTTSCHHH---HHHHHHHHHHHHHHHTCEEEEEE-----SCHHHHHHHCSEEEEEETTEEE
T ss_pred --HHHHHhcCCCEEEECCCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEC-----CCHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999 788765 77888888888654 88999998 888888887 999999999999
Q ss_pred ecCccceee
Q 016165 384 NTPEVVRVY 392 (394)
Q Consensus 384 ~~~~~~~v~ 392 (394)
..+.+.++|
T Consensus 220 ~~g~~~~l~ 228 (372)
T 1g29_1 220 QVGSPDEVY 228 (372)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHH
Confidence 887776665
No 16
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.89 E-value=9e-25 Score=204.72 Aligned_cols=194 Identities=15% Similarity=0.235 Sum_probs=142.2
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc----
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---- 246 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---- 246 (394)
+--++++.|++. ..++++++|++.+ +++|+||||||||||+|+|+|... |..+. +.+.+++..
T Consensus 9 ~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--------p~~G~--I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 9 KVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--------PSSGR--ILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEECCCSHH
T ss_pred EEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--------CCCeE--EEECCEECCcccc
Confidence 334667788652 3499999999887 999999999999999999999983 44444 444444331
Q ss_pred ----ccCCceeeeccC-CCCCcccccccccc-------hhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccC
Q 016165 247 ----SIPGNTVAVQAD-MPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (394)
Q Consensus 247 ----~~~~~~~~~~~~-~~~~g~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~ 309 (394)
......+++|.. ..+...+...+..+ ...+..+.+.++++.+++.+ .++.+| ||+||++
T Consensus 78 ~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~---- 153 (275)
T 3gfo_A 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA---- 153 (275)
T ss_dssp HHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH----
T ss_pred cHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH----
Confidence 012345556553 12224455554421 12234556777888888865 678899 9999999
Q ss_pred hHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHh-cCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 310 ~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~-~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
+||+++.+|+++|+ ++|+.. ...+.++++.++ +.+.++|+++ |+.+.+..+ |+++++++|++
T Consensus 154 ---iAraL~~~P~lLlLDEPts~LD~~~---~~~i~~~l~~l~~~~g~tvi~vt-----Hdl~~~~~~~drv~~l~~G~i 222 (275)
T 3gfo_A 154 ---IAGVLVMEPKVLILDEPTAGLDPMG---VSEIMKLLVEMQKELGITIIIAT-----HDIDIVPLYCDNVFVMKEGRV 222 (275)
T ss_dssp ---HHHHHTTCCSEEEEECTTTTCCHHH---HHHHHHHHHHHHHHHCCEEEEEE-----SCCSSGGGGCSEEEEEETTEE
T ss_pred ---HHHHHHcCCCEEEEECccccCCHHH---HHHHHHHHHHHHhhCCCEEEEEe-----cCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999 788876 788899999987 5588999999 666666665 99999999999
Q ss_pred eecCccceee
Q 016165 383 LNTPEVVRVY 392 (394)
Q Consensus 383 ~~~~~~~~v~ 392 (394)
+..+.+.+++
T Consensus 223 ~~~g~~~~~~ 232 (275)
T 3gfo_A 223 ILQGNPKEVF 232 (275)
T ss_dssp EEEECHHHHT
T ss_pred EEECCHHHHh
Confidence 9888776654
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.88 E-value=3.1e-24 Score=195.58 Aligned_cols=185 Identities=20% Similarity=0.238 Sum_probs=136.9
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|++ ..++++++|++.+ +++|+||||||||||+|+|+|... |..++ +.+.+.+....
T Consensus 8 ~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 8 ENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--------PTEGK--VFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--------CSEEE--EEETTEECCSSCHHH
T ss_pred EeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEECCCCCHHH
Confidence 356778876 5699999999877 999999999999999999999983 44444 33344332211
Q ss_pred ------CCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccCh
Q 016165 249 ------PGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (394)
Q Consensus 249 ------~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~ 310 (394)
....+++|....+..++..++..+. ..+..+.+.++++.+++.+ .++.+| ||+||+.
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~----- 150 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVA----- 150 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHH-----
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-----
Confidence 1244555655555555655554221 1123445667788888765 578899 9999999
Q ss_pred HHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeee
Q 016165 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLN 384 (394)
Q Consensus 311 ~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~ 384 (394)
+||+++.+|+++|+ .+|+.. ...+.++++++++++.++|+++ |+.+.+ .. ++++++++|+++.
T Consensus 151 --laral~~~p~lllLDEPt~~LD~~~---~~~~~~~l~~l~~~g~tvi~vt-----Hd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 151 --IARALANEPILLFADEPTGNLDSAN---TKRVMDIFLKINEGGTSIVMVT-----HERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp --HHHHTTTCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEEC-----SCHHHH-TTSSEEEEEETTEEEE
T ss_pred --HHHHHHcCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHCCCEEEEEc-----CCHHHH-HhCCEEEEEECCEEEE
Confidence 99999999999999 788766 7888899999876688888888 777766 44 8999999999987
Q ss_pred cCc
Q 016165 385 TPE 387 (394)
Q Consensus 385 ~~~ 387 (394)
.|.
T Consensus 220 ~g~ 222 (224)
T 2pcj_A 220 EIT 222 (224)
T ss_dssp EEE
T ss_pred Eee
Confidence 653
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.88 E-value=4.9e-24 Score=205.72 Aligned_cols=190 Identities=15% Similarity=0.245 Sum_probs=146.6
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|++ . ++++++|++.. +++|+||||||||||+|+|+|.. .|..++ +.+.+++....
T Consensus 5 ~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~--I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 5 ESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH--------VPDSGR--ILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS--------CCSEEE--EEETTEECTTSCHHH
T ss_pred EEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC--------CCCCcE--EEECCEECCCCchhh
Confidence 356778876 5 99999999887 99999999999999999999999 344444 34444433221
Q ss_pred CCceeeeccCCCCCcccccccccchhh----hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 249 PGNTVAVQADMPFSGLTTFGTAFLSKF----ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
....+++|....+..++..++..+... ...+.+.++++.+++.+ .|+.+| ||+||++ +||+++.
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRva-------lAraL~~ 144 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVA-------LARALVT 144 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHH-------HHHHTTS
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHHc
Confidence 245667777766777777777632211 01145667788888765 688899 9999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCccceee
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVY 392 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v~ 392 (394)
+|+++|+ .+|+.. ...+.++|+++.+ .+.++|+|+ |+.+++..+ |++++|++|+++..+.+.++|
T Consensus 145 ~P~lLLLDEP~s~LD~~~---~~~l~~~l~~l~~~~g~tii~vT-----Hd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRT---QENAREMLSVLHKKNKLTVLHIT-----HDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp CCSEEEEESSSTTSCHHH---HHHHHHHHHHHHHHTTCEEEEEE-----SCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCCEEEEECccccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999 788765 7888889988865 488899998 888888887 999999999999887776665
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.88 E-value=2.6e-24 Score=200.06 Aligned_cols=189 Identities=14% Similarity=0.206 Sum_probs=137.0
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
-++++.|++ ..++++++|++.+ +++|+||||||||||+|+|+|... |..++ +.+.+.+....
T Consensus 11 ~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 11 ENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--------ADEGR--VYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEECTTCCHHH
T ss_pred eeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCcE--EEECCEECCCCCHHH
Confidence 456778876 5699999999887 999999999999999999999984 33333 33334332111
Q ss_pred ---CCceeeeccCCCCCcccccccccch--------------------hhhhhcCCccccccceeec----CCCCCc-hh
Q 016165 249 ---PGNTVAVQADMPFSGLTTFGTAFLS--------------------KFECSQMPHSLLEHITLVD----TPGVLS-GE 300 (394)
Q Consensus 249 ---~~~~~~~~~~~~~~g~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge 300 (394)
....+++|....+..++..++..+. ..+..+.+.++++.+++.+ .++.+| ||
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence 1344455554444444444443211 1122344567778888755 577899 99
Q ss_pred hhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhH
Q 016165 301 KQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGA 374 (394)
Q Consensus 301 ~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~ 374 (394)
+||+. +||+++.+|+++|+ ++|+.. ...+.++++++++++.++|+++ |+.+++..+ |++
T Consensus 159 kQrv~-------iAraL~~~p~lllLDEPts~LD~~~---~~~l~~~l~~l~~~g~tvi~vt-----Hd~~~~~~~~d~v 223 (257)
T 1g6h_A 159 MKLVE-------IGRALMTNPKMIVMDEPIAGVAPGL---AHDIFNHVLELKAKGITFLIIE-----HRLDIVLNYIDHL 223 (257)
T ss_dssp HHHHH-------HHHHHHTCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEEC-----SCCSTTGGGCSEE
T ss_pred HHHHH-------HHHHHHcCCCEEEEeCCccCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----cCHHHHHHhCCEE
Confidence 99999 99999999999999 788876 8888999999877788888888 555555555 899
Q ss_pred hhhccceeeecCccce
Q 016165 375 LMWSLGKVLNTPEVVR 390 (394)
Q Consensus 375 ~~~~~G~i~~~~~~~~ 390 (394)
+++++|+++..+.+.+
T Consensus 224 ~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 224 YVMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEEETTEEEEEEESHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999987766554
No 20
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=5.2e-24 Score=197.70 Aligned_cols=192 Identities=14% Similarity=0.139 Sum_probs=143.0
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc---
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--- 247 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~--- 247 (394)
+--++++.|++ ..++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+...
T Consensus 17 ~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--------p~~G~--I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 17 VVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--------PSSGI--VTVFGKNVVEEPH 84 (256)
T ss_dssp EEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEETTTCHH
T ss_pred EEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--------CCceE--EEECCEECCccHH
Confidence 33466778876 5699999999877 999999999999999999999983 44444 3334433211
Q ss_pred --cCCceeeeccCCCCCcccccccccch-------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHH
Q 016165 248 --IPGNTVAVQADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (394)
Q Consensus 248 --~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~i 313 (394)
.....++++....+.+++...+..+. ..+..+.+.++++.+++.+ .++.+| ||+||+. +
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~-------l 157 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL-------I 157 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHH-------H
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH-------H
Confidence 12345566666556666666665221 1112344667788888754 678899 9999999 9
Q ss_pred HHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 314 aral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
||+++.+|+++|+ ++|+.. ...+.++|+.+++.+.++|+++ |+.+.+..+ ++++++++|+++..+.
T Consensus 158 AraL~~~p~lllLDEPts~LD~~~---~~~l~~~l~~l~~~g~tiiivt-----Hd~~~~~~~~d~v~~l~~G~i~~~g~ 229 (256)
T 1vpl_A 158 ARALMVNPRLAILDEPTSGLDVLN---AREVRKILKQASQEGLTILVSS-----HNMLEVEFLCDRIALIHNGTIVETGT 229 (256)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEEE-----CCHHHHTTTCSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCEEEEeCCccccCHHH---HHHHHHHHHHHHhCCCEEEEEc-----CCHHHHHHHCCEEEEEECCEEEEecC
Confidence 9999999999999 788766 7888899999877788888888 888888775 9999999999987665
Q ss_pred ccee
Q 016165 388 VVRV 391 (394)
Q Consensus 388 ~~~v 391 (394)
+.++
T Consensus 230 ~~~~ 233 (256)
T 1vpl_A 230 VEEL 233 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.88 E-value=1.4e-23 Score=193.08 Aligned_cols=187 Identities=19% Similarity=0.275 Sum_probs=139.2
Q ss_pred eeeeeecCCcCcccccCCCCccc-EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc----cCC
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----IPG 250 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~-~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----~~~ 250 (394)
++++.|++ ++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+... ...
T Consensus 6 ~l~~~y~~----~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~~~ 71 (240)
T 2onk_A 6 RAEKRLGN----FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVK--------PDRGE--VRLNGADITPLPPERRG 71 (240)
T ss_dssp EEEEEETT----EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSC--------CSEEE--EEETTEECTTSCTTTSC
T ss_pred EEEEEeCC----EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCC--------CCceE--EEECCEECCcCchhhCc
Confidence 55677864 49999998777 999999999999999999999983 44444 3334433211 123
Q ss_pred ceeeeccCCCCCcccccccccch-h----hhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhc
Q 016165 251 NTVAVQADMPFSGLTTFGTAFLS-K----FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~-~----~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
..++++....+.+++..++..+. . ....+.+.++++.+++.+ .++.+| ||+||+. +||+++.+
T Consensus 72 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~-------lAral~~~ 144 (240)
T 2onk_A 72 IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVA-------LARALVIQ 144 (240)
T ss_dssp CBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHH-------HHHHHTTC
T ss_pred EEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH-------HHHHHHcC
Confidence 45566665555566665554221 1 112445667888888765 578899 9999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
|+++|+ ++|+.. ...+.++++.+.++ +.++++++ |+.+++..+ ++++++++|+++..+++.++
T Consensus 145 p~lllLDEPts~LD~~~---~~~~~~~l~~l~~~~g~tvi~vt-----Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKT---KGVLMEELRFVQREFDVPILHVT-----HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp CSSBEEESTTSSCCHHH---HHHHHHHHHHHHHHHTCCEEEEE-----SCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999 788876 78888999988654 78888888 888888777 99999999999887765554
No 22
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=99.87 E-value=1.1e-21 Score=157.11 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=91.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcC
Q 016165 7 PIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDG 86 (394)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g 86 (394)
..|.+|++|++.|.++|..+|+ ++|+|++++++.+|.++|++.+.|.+||+.+|.|++|.++++||+.||+++.++++|
T Consensus 5 ~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~~~~~g 83 (106)
T 1eh2_A 5 SPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEK 83 (106)
T ss_dssp -CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcC
Confidence 4589999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCccCCCCCCCCCccc
Q 016165 87 HQVTHDLWNSDVDFQNLKPPAMEG 110 (394)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~lp~~~~ 110 (394)
.++|.+||+ .+.||+.+.
T Consensus 84 ~~lP~~LP~------~l~pps~r~ 101 (106)
T 1eh2_A 84 EPVPMSLPP------ALVPPSKRK 101 (106)
T ss_dssp CCCCSSCCT------TTSCTTCC-
T ss_pred CCCCCCCCc------ccCChhhcc
Confidence 999999998 777777664
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.87 E-value=7.8e-23 Score=189.55 Aligned_cols=182 Identities=19% Similarity=0.267 Sum_probs=131.0
Q ss_pred ceeeeeec-CCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCc
Q 016165 175 LEVTYRFN-DFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGN 251 (394)
Q Consensus 175 l~~~~~~~-~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~ 251 (394)
-++++.|+ + ..++++++|++.+ +++|+||||||||||+++|+|... |..++..+ ....
T Consensus 8 ~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------p~~G~I~~---------~~~i 68 (253)
T 2nq2_C 8 ENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--------PIQGKIEV---------YQSI 68 (253)
T ss_dssp EEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--------CSEEEEEE---------CSCE
T ss_pred eeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCcEEEE---------eccE
Confidence 45677887 5 5699999999877 999999999999999999999984 33333210 0112
Q ss_pred eeeeccCCCCCcccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHH
Q 016165 252 TVAVQADMPFSGLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
.++++....+...+..++..+. .....+.+.++++.+++.+ .++.+| ||+||+. +||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------lAr 141 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLIL-------IAR 141 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH-------HHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHH-------HHH
Confidence 2333333323333333333111 1122344566777777754 578889 9999999 999
Q ss_pred HHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcc
Q 016165 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEV 388 (394)
Q Consensus 316 al~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~ 388 (394)
+++.+|+++|+ ++|+.. ...+.++++.+.++ +.++|+++ |+.+.+..+ ++++++++|+ +..+..
T Consensus 142 aL~~~p~lllLDEPts~LD~~~---~~~l~~~l~~l~~~~g~tvi~vt-----Hd~~~~~~~~d~v~~l~~G~-~~~g~~ 212 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLAN---QDIVLSLLIDLAQSQNMTVVFTT-----HQPNQVVAIANKTLLLNKQN-FKFGET 212 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHH---HHHHHHHHHHHHHTSCCEEEEEE-----SCHHHHHHHCSEEEEEETTE-EEEEEH
T ss_pred HHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHHhCCEEEEEeCCe-EecCCH
Confidence 99999999999 788776 78888999998766 88888888 888888776 9999999999 766654
Q ss_pred cee
Q 016165 389 VRV 391 (394)
Q Consensus 389 ~~v 391 (394)
.++
T Consensus 213 ~~~ 215 (253)
T 2nq2_C 213 RNI 215 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 24
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.86 E-value=1.1e-22 Score=187.47 Aligned_cols=187 Identities=16% Similarity=0.229 Sum_probs=128.3
Q ss_pred eeeeee-cCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-----
Q 016165 176 EVTYRF-NDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 176 ~~~~~~-~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~----- 247 (394)
++++.| ++ ..++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+...
T Consensus 6 ~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 6 HVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--------PTAGE--ITIDGQPIDNISLEN 73 (243)
T ss_dssp EEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--------CSBSC--EEETTEESTTTSCSC
T ss_pred EEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCcE--EEECCEEhhhCCHHH
Confidence 556777 44 5699999999887 999999999999999999999984 34444 3333332211
Q ss_pred -cCCceeeeccCCCCCcccccccccch--hhhhhcCCccccccceee---------------cCCCCCc-hhhhhhhccc
Q 016165 248 -IPGNTVAVQADMPFSGLTTFGTAFLS--KFECSQMPHSLLEHITLV---------------DTPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 248 -~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~~l~---------------Dt~g~ls-Ge~qrv~~~~ 308 (394)
.....++++....+.+ +...+..+. .....+.+.++++.+++. ..++.+| ||+||+.
T Consensus 74 ~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~--- 149 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA--- 149 (243)
T ss_dssp CTTTCCEECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH---
T ss_pred HHhhEEEEcCCCccccc-cHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH---
Confidence 1234455555544442 444444221 100011112222222221 2456889 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVL 383 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ .+|+.. ...+.++++.+. ++.++|+++ |+.+.+..+|+++++++|+++
T Consensus 150 ----lAral~~~p~lllLDEPts~LD~~~---~~~i~~~l~~~~-~~~tvi~vt-----H~~~~~~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 150 ----IARAFLRNPKILMLDEATASLDSES---ESMVQKALDSLM-KGRTTLVIA-----HRLSTIVDADKIYFIEKGQIT 216 (243)
T ss_dssp ----HHHHHHHCCSEEEEECCSCSSCSSS---CCHHHHHHHHHH-TTSEEEEEC-----CSHHHHHHCSEEEEEETTEEC
T ss_pred ----HHHHHhcCCCEEEEECCcccCCHHH---HHHHHHHHHHhc-CCCEEEEEe-----CChHHHHhCCEEEEEECCEEE
Confidence 99999999999999 899887 788899999887 578888888 777766545999999999998
Q ss_pred ecCcccee
Q 016165 384 NTPEVVRV 391 (394)
Q Consensus 384 ~~~~~~~v 391 (394)
..+...++
T Consensus 217 ~~g~~~~~ 224 (243)
T 1mv5_A 217 GSGKHNEL 224 (243)
T ss_dssp CCSCHHHH
T ss_pred EeCCHHHH
Confidence 87765543
No 25
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.86 E-value=6.5e-22 Score=202.52 Aligned_cols=97 Identities=26% Similarity=0.435 Sum_probs=89.4
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCC
Q 016165 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGH 87 (394)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g~ 87 (394)
.|. +++|+++|+++|.++|+. +|+|+|++|++||.+||||+++|++||+|||.+++|+||++||++|||||.++++|.
T Consensus 450 ~w~-~~~~~~~y~~~F~~~~~~-~g~i~g~~a~~~~~~s~Lp~~~L~~IW~l~D~~~~g~L~~~eF~~am~Li~~~~~g~ 527 (550)
T 2qpt_A 450 EWV-VTKDKSKYDEIFYNLAPA-DGKLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDDEEFALASHLIEAKLEGH 527 (550)
T ss_dssp -CT-TTTTHHHHHHHHHHTCCS-SSEECHHHHHHHHHHTTCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHHHHHHHHSC
T ss_pred CCC-CHHHHHHHHHHHHhcCCC-CCeecHHHHHHHHHHcCCCHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHcCC
Confidence 466 588999999999999974 699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCccCCCCCCCCCccccc
Q 016165 88 QVTHDLWNSDVDFQNLKPPAMEGLD 112 (394)
Q Consensus 88 ~~~~~l~~~~~~~~~~~lp~~~~l~ 112 (394)
++|..||+ .+.+|+.+...
T Consensus 528 ~lP~~lp~------~l~p~s~r~~~ 546 (550)
T 2qpt_A 528 GLPTNLPR------RLVPPSKRRQK 546 (550)
T ss_dssp CCCSSCCG------GGSCSSCCCC-
T ss_pred CCCCCCCc------ccCChhhCCCC
Confidence 99999998 78888777554
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=1.9e-23 Score=196.35 Aligned_cols=192 Identities=17% Similarity=0.178 Sum_probs=135.6
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc--c-
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--S- 247 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--~- 247 (394)
+--++++.|++ ..++++++|++.+ +++|+||||||||||+|+|+|... |..+. +.+.+.+.. .
T Consensus 23 ~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--------p~~G~--I~~~g~~~~~~~~ 90 (279)
T 2ihy_A 23 QLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--------ATSGT--VNLFGKMPGKVGY 90 (279)
T ss_dssp EEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--------CSEEE--EEETTBCCC---C
T ss_pred EEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--------CCCeE--EEECCEEcccccC
Confidence 33466778876 5699999999877 999999999999999999999984 33333 333443321 1
Q ss_pred -----cCCceeeeccCCC-CC-cccccccccch-----------hhhhhcCCccccccceeec----CCCCCc-hhhhhh
Q 016165 248 -----IPGNTVAVQADMP-FS-GLTTFGTAFLS-----------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRT 304 (394)
Q Consensus 248 -----~~~~~~~~~~~~~-~~-g~~~~~~~~~~-----------~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv 304 (394)
.....+++|.... +. .++..++..+. ..+..+.+.++++.+++.+ .++.+| ||+||+
T Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv 170 (279)
T 2ihy_A 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV 170 (279)
T ss_dssp CHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred CHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 1223444444321 21 22444433111 1122344567777887754 678899 999999
Q ss_pred hcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeE--EEEEecCCccCHHHHHHH-HhHhh
Q 016165 305 QRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKI--RVVLNKADQVDTQQLMRV-YGALM 376 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~v--iiv~nK~Dl~~~~~~~~~-~~~~~ 376 (394)
. +||+++.+|+++|+ .+|+.. ...+.++|+.+.+++.++ |+++ |+.+.+..+ +++++
T Consensus 171 ~-------lAraL~~~p~lLlLDEPts~LD~~~---~~~l~~~l~~l~~~g~tv~~iivt-----Hd~~~~~~~~d~v~~ 235 (279)
T 2ihy_A 171 M-------IARALMGQPQVLILDEPAAGLDFIA---RESLLSILDSLSDSYPTLAMIYVT-----HFIEEITANFSKILL 235 (279)
T ss_dssp H-------HHHHHHTCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHHCTTCEEEEEE-----SCGGGCCTTCCEEEE
T ss_pred H-------HHHHHhCCCCEEEEeCCccccCHHH---HHHHHHHHHHHHHCCCEEEEEEEe-----cCHHHHHHhCCEEEE
Confidence 9 99999999999999 788876 788889999887667888 8888 666666555 89999
Q ss_pred hccceeeecCcccee
Q 016165 377 WSLGKVLNTPEVVRV 391 (394)
Q Consensus 377 ~~~G~i~~~~~~~~v 391 (394)
+++|+++..+.+.++
T Consensus 236 l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 236 LKDGQSIQQGAVEDI 250 (279)
T ss_dssp EETTEEEEEEEHHHH
T ss_pred EECCEEEEECCHHHH
Confidence 999999877665443
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.85 E-value=8.1e-23 Score=189.26 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=132.1
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhc--cCCCCCcCCCcccceeEEEEecCccccc--
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRT--SYPGAHIGPEPTTDRFVVVMSGVDDRSI-- 248 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~--~~~~~~vs~~p~t~r~~i~~~~~~~~~~-- 248 (394)
-++++.|++ ..++++++|++.+ +++|+||||||||||+++|+|. . .|..+. +.+.+.+....
T Consensus 7 ~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~--------~p~~G~--I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 7 RDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY--------TVERGE--ILLDGENILELSP 74 (250)
T ss_dssp EEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC--------EEEEEE--EEETTEECTTSCH
T ss_pred EeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--------CCCceE--EEECCEECCCCCH
Confidence 456778876 5699999999877 9999999999999999999998 4 344444 44444432211
Q ss_pred -----CCceeeeccCCCCCcccccccccchh----------hhhhcCCcccccccee-ec----CCCC-Cc-hhhhhhhc
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSK----------FECSQMPHSLLEHITL-VD----TPGV-LS-GEKQRTQR 306 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~l~~~~l-~D----t~g~-ls-Ge~qrv~~ 306 (394)
.+..+++|....+.+++...+..+.. .+..+.+.++++.+++ .+ .++. +| ||+||+.
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~- 153 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE- 153 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH-
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH-
Confidence 12344556555555555555442111 1122345667777777 33 5788 99 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH--HhHhhhcc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV--YGALMWSL 379 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~--~~~~~~~~ 379 (394)
+||+++.+|+++|+ ++|+.. ...+.++++.+.+++.++|+++ |+.+.+..+ |+++++++
T Consensus 154 ------iAraL~~~p~lllLDEPts~LD~~~---~~~l~~~l~~l~~~g~tvi~vt-----Hd~~~~~~~~~d~v~~l~~ 219 (250)
T 2d2e_A 154 ------ILQLLVLEPTYAVLDETDSGLDIDA---LKVVARGVNAMRGPNFGALVIT-----HYQRILNYIQPDKVHVMMD 219 (250)
T ss_dssp ------HHHHHHHCCSEEEEECGGGTTCHHH---HHHHHHHHHHHCSTTCEEEEEC-----SSSGGGGTSCCSEEEEEET
T ss_pred ------HHHHHHcCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHHhcCCEEEEEe-----cCHHHHHHhcCCEEEEEEC
Confidence 99999999999999 888876 7888899999877788888888 665555553 78999999
Q ss_pred ceeeecCcc
Q 016165 380 GKVLNTPEV 388 (394)
Q Consensus 380 G~i~~~~~~ 388 (394)
|+++..+..
T Consensus 220 G~i~~~g~~ 228 (250)
T 2d2e_A 220 GRVVATGGP 228 (250)
T ss_dssp TEEEEEESH
T ss_pred CEEEEEeCH
Confidence 999876654
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.85 E-value=1.1e-22 Score=193.08 Aligned_cols=191 Identities=17% Similarity=0.216 Sum_probs=134.3
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC-
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP- 249 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~- 249 (394)
+.-++++.|++. ..+|++++|++++ +++|+||||||||||+++|+|.. .|..++ |.+++.+...+.
T Consensus 55 ~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~--------~p~~G~--I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 55 EFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY--------DISSGC--IRIDGQDISQVTQ 123 (306)
T ss_dssp EEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS--------CCSEEE--EEETTEETTSBCH
T ss_pred EEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC--------CCCCcE--EEECCEEcccCCH
Confidence 334677888542 5699999999887 99999999999999999999999 444444 444555443322
Q ss_pred -----CceeeeccCCCCCcccccccccchhh-hhhcCCccccccce---------------eecCCCCCc-hhhhhhhcc
Q 016165 250 -----GNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHIT---------------LVDTPGVLS-GEKQRTQRA 307 (394)
Q Consensus 250 -----~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~---------------l~Dt~g~ls-Ge~qrv~~~ 307 (394)
...+++|....|.+ +...|+.+... ...+...++++.++ +.+.+..+| ||+||++
T Consensus 124 ~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRva-- 200 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVA-- 200 (306)
T ss_dssp HHHHHTEEEECSSCCCCSE-EHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHH--
T ss_pred HHHhcceEEEecCCccCcc-cHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHH--
Confidence 45667777666644 55555432211 00001111111111 122446788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
|||+++.+|+++|+ .+|+.. ...+.+.|+.+.+ +.++|+|+ |+...+..+|+++++++|++
T Consensus 201 -----iARAL~~~p~iLlLDEPts~LD~~~---~~~i~~~l~~l~~-~~Tvi~it-----H~l~~~~~aD~i~vl~~G~i 266 (306)
T 3nh6_A 201 -----IARTILKAPGIILLDEATSALDTSN---ERAIQASLAKVCA-NRTTIVVA-----HRLSTVVNADQILVIKDGCI 266 (306)
T ss_dssp -----HHHHHHHCCSEEEEECCSSCCCHHH---HHHHHHHHHHHHT-TSEEEEEC-----CSHHHHHTCSEEEEEETTEE
T ss_pred -----HHHHHHhCCCEEEEECCcccCCHHH---HHHHHHHHHHHcC-CCEEEEEE-----cChHHHHcCCEEEEEECCEE
Confidence 99999999999999 788765 7778888888765 57888887 88888776799999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..|...++
T Consensus 267 v~~G~~~el 275 (306)
T 3nh6_A 267 VERGRHEAL 275 (306)
T ss_dssp EEEECHHHH
T ss_pred EEECCHHHH
Confidence 988776554
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.85 E-value=9.2e-23 Score=188.45 Aligned_cols=191 Identities=14% Similarity=0.202 Sum_probs=126.6
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI--- 248 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~--- 248 (394)
.-++++.|.+....++++++|++.+ +++|+||||||||||+++|+|... |..+. +.+.+.+....
T Consensus 10 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~--I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 10 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--------PENGQ--VLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEETTTSCHH
T ss_pred EEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCcE--EEECCEEhhhCCHH
Confidence 3456778821115699999999887 999999999999999999999984 33333 33333332211
Q ss_pred ---CCceeeeccCCCCCcccccccccchh-hhhhcCCccccccceee---------------cCCCCCc-hhhhhhhccc
Q 016165 249 ---PGNTVAVQADMPFSGLTTFGTAFLSK-FECSQMPHSLLEHITLV---------------DTPGVLS-GEKQRTQRAY 308 (394)
Q Consensus 249 ---~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~l~---------------Dt~g~ls-Ge~qrv~~~~ 308 (394)
....+++|....+.. +...+..+.. ....+.+.++++.+++. ..++.+| ||+||+.
T Consensus 80 ~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~--- 155 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIA--- 155 (247)
T ss_dssp HHHHHEEEECSSCCCTTS-BHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHH---
T ss_pred HHHhcEEEEeCCCccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHH---
Confidence 123344454443432 4444432211 00111122233333332 1357889 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVL 383 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ .+|+.. ...+.++++.+. ++.++|+++ |+.+.+..+++++++++|+++
T Consensus 156 ----iAraL~~~p~lllLDEPts~LD~~~---~~~i~~~l~~~~-~g~tviivt-----H~~~~~~~~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 156 ----IARALVNNPKILIFDEATSALDYES---EHVIMRNMHKIC-KGRTVIIIA-----HRLSTVKNADRIIVMEKGKIV 222 (247)
T ss_dssp ----HHHHHTTCCSEEEECCCCSCCCHHH---HHHHHHHHHHHH-TTSEEEEEC-----SSGGGGTTSSEEEEEETTEEE
T ss_pred ----HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHc-CCCEEEEEe-----CCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999 888776 788889998885 478888888 555554445899999999998
Q ss_pred ecCcccee
Q 016165 384 NTPEVVRV 391 (394)
Q Consensus 384 ~~~~~~~v 391 (394)
..+...++
T Consensus 223 ~~g~~~~l 230 (247)
T 2ff7_A 223 EQGKHKEL 230 (247)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 87665544
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.85 E-value=5.4e-23 Score=192.11 Aligned_cols=192 Identities=17% Similarity=0.248 Sum_probs=133.6
Q ss_pred ceeeeeec-CCc--CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc---
Q 016165 175 LEVTYRFN-DFV--SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--- 246 (394)
Q Consensus 175 l~~~~~~~-~~~--~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~--- 246 (394)
-++++.|+ +.. ..++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+..
T Consensus 6 ~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--------p~~G~--I~~~g~~~~~~~ 75 (266)
T 2yz2_A 6 VNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--------PTSGD--VLYDGERKKGYE 75 (266)
T ss_dssp EEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEECCHHH
T ss_pred EEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--------CCCcE--EEECCEECchHH
Confidence 35667786 211 3589999999877 999999999999999999999984 33333 333332221
Q ss_pred ccCCceeeeccC-CCCCcccccccccch------hhhhhcCCccccccceee--c----CCCCCc-hhhhhhhcccChHH
Q 016165 247 SIPGNTVAVQAD-MPFSGLTTFGTAFLS------KFECSQMPHSLLEHITLV--D----TPGVLS-GEKQRTQRAYDFTG 312 (394)
Q Consensus 247 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~------~~~~~~~~~~~l~~~~l~--D----t~g~ls-Ge~qrv~~~~~~~~ 312 (394)
......++++.. ..+...+..++..+. ..+..+.+.++++.+++. + .++.+| ||+||+.
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~------- 148 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVA------- 148 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHH-------
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHH-------
Confidence 111234444542 223334444444211 111223356677888876 4 678899 9999999
Q ss_pred HHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecC
Q 016165 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTP 386 (394)
Q Consensus 313 iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~ 386 (394)
+||+++.+|+++|+ ++|+.. ...+.++++.+.+++.++|+++ |+.+.+..+ ++++++++|+++..+
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~---~~~l~~~l~~l~~~g~tii~vt-----Hd~~~~~~~~d~v~~l~~G~i~~~g 220 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREG---KTDLLRIVEKWKTLGKTVILIS-----HDIETVINHVDRVVVLEKGKKVFDG 220 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEEC-----SCCTTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHcCCCEEEEcCccccCCHHH---HHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999 788876 7888899999876688888888 666566654 899999999998776
Q ss_pred cccee
Q 016165 387 EVVRV 391 (394)
Q Consensus 387 ~~~~v 391 (394)
...++
T Consensus 221 ~~~~~ 225 (266)
T 2yz2_A 221 TRMEF 225 (266)
T ss_dssp EHHHH
T ss_pred CHHHH
Confidence 55443
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.85 E-value=1.9e-22 Score=188.53 Aligned_cols=194 Identities=18% Similarity=0.215 Sum_probs=136.0
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
++--++++.|++ ..++++++|++.+ +++|+||||||||||+|+|+|... ..|..++ +.+.+.+....
T Consensus 21 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~------~~p~~G~--I~~~g~~i~~~~ 90 (267)
T 2zu0_C 21 LSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED------YEVTGGT--VEFKGKDLLALS 90 (267)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT------CEEEEEE--EEETTEEGGGSC
T ss_pred EEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC------CCCCCeE--EEECCEECCcCC
Confidence 344566778876 5699999999887 999999999999999999999841 0244444 34444432211
Q ss_pred ------CCceeeeccCCCCCcccccccccch--------------hhhhhcCCccccccceee-c----CCC-CCc-hhh
Q 016165 249 ------PGNTVAVQADMPFSGLTTFGTAFLS--------------KFECSQMPHSLLEHITLV-D----TPG-VLS-GEK 301 (394)
Q Consensus 249 ------~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~-D----t~g-~ls-Ge~ 301 (394)
.+..++++....+.+++...+.... ..+..+.+.++++.+++. + .++ .+| ||+
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 1234455655555554443333110 111223456777777774 2 455 499 999
Q ss_pred hhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHH--HHhH
Q 016165 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMR--VYGA 374 (394)
Q Consensus 302 qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~--~~~~ 374 (394)
||++ +||+++.+|+++|+ .+|+.. ...+.++++.+++++.++|+++ |+.+.+.. ++++
T Consensus 171 QRv~-------iAraL~~~p~lLlLDEPts~LD~~~---~~~l~~~l~~l~~~g~tviivt-----Hd~~~~~~~~~d~v 235 (267)
T 2zu0_C 171 KRND-------ILQMAVLEPELCILDESDSGLDIDA---LKVVADGVNSLRDGKRSFIIVT-----HYQRILDYIKPDYV 235 (267)
T ss_dssp HHHH-------HHHHHHHCCSEEEEESTTTTCCHHH---HHHHHHHHHTTCCSSCEEEEEC-----SSGGGGGTSCCSEE
T ss_pred HHHH-------HHHHHHhCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHhcCCEEEEEe-----eCHHHHHhhcCCEE
Confidence 9999 99999999999999 788766 7788888888876688888888 66666655 3889
Q ss_pred hhhccceeeecCccce
Q 016165 375 LMWSLGKVLNTPEVVR 390 (394)
Q Consensus 375 ~~~~~G~i~~~~~~~~ 390 (394)
+++++|+++..+.+.+
T Consensus 236 ~~l~~G~i~~~g~~~~ 251 (267)
T 2zu0_C 236 HVLYQGRIVKSGDFTL 251 (267)
T ss_dssp EEEETTEEEEEECTTH
T ss_pred EEEECCEEEEEcCHHH
Confidence 9999999988766554
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.84 E-value=3e-22 Score=185.05 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=131.6
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc------CCceeeeccC
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI------PGNTVAVQAD 258 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~------~~~~~~~~~~ 258 (394)
.++++++|++.+ +++|+||||||||||+|+|+|.. .|. ++ +.+.+.+.... ....++++..
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~--------~p~-G~--i~~~g~~~~~~~~~~~~~~i~~v~q~~ 82 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--------SGK-GS--IQFAGQPLEAWSATKLALHRAYLSQQQ 82 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS--------CCE-EE--EEETTEEGGGSCHHHHHHHEEEECSCC
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCC-eE--EEECCEECCcCCHHHHhceEEEECCCC
Confidence 489999998877 99999999999999999999998 344 43 34444432211 1234455555
Q ss_pred CCCCcccccccccchhh--hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCC-------EE
Q 016165 259 MPFSGLTTFGTAFLSKF--ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD-------LI 324 (394)
Q Consensus 259 ~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~d-------ll 324 (394)
..+.+++..++..+... ...+.+.++++.+++.+ .++.+| ||+||+. +||+++.+|+ ++
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVR-------LAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH-------HHHHHHHHCTTTCTTCCEE
T ss_pred ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHHcCCCcCCCCCeEE
Confidence 44555555555422110 01334556777777754 577889 9999999 9999999999 99
Q ss_pred EE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCcccee
Q 016165 325 LL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 325 Ll-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~~~~v 391 (394)
|+ ++|+.. ...+.++++.+.+++.++|+++ |+.+.+..+ ++++++++|+++..+.+.++
T Consensus 156 lLDEPts~LD~~~---~~~l~~~l~~l~~~g~tviivt-----Hd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 156 LLDEPMNSLDVAQ---QSALDKILSALSQQGLAIVMSS-----HDLNHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp EESSTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEEC-----SCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EEECCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99 788876 7888899999876688888887 888888776 99999999999876655443
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.83 E-value=3.4e-22 Score=195.61 Aligned_cols=193 Identities=23% Similarity=0.285 Sum_probs=133.9
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc--
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-- 248 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-- 248 (394)
+--++++.|++....++++++|++.+ +++|+||||||||||+++|+|.. . ..++ +.+.+++....
T Consensus 21 ~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--------~-~~G~--I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 21 TVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--------N-TEGE--IQIDGVSWDSITL 89 (390)
T ss_dssp EEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS--------E-EEEE--EEESSCBTTSSCH
T ss_pred EEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC--------C-CCeE--EEECCEECCcCCh
Confidence 33466778843226799999999887 99999999999999999999987 2 2233 45555544322
Q ss_pred ----CCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeec----CCCC-----------Cc-hhhhhhhccc
Q 016165 249 ----PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGV-----------LS-GEKQRTQRAY 308 (394)
Q Consensus 249 ----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~D----t~g~-----------ls-Ge~qrv~~~~ 308 (394)
....+++|....|.. +...+.........+.+.++++.+++.+ .|.. +| ||+||++
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~-tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva--- 165 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSG-TFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC--- 165 (390)
T ss_dssp HHHHHTEEEESCCCCCCSE-EHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH---
T ss_pred HHHhCCEEEEcCCcccCcc-CHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH---
Confidence 234556666655542 4444432111111223344555666543 4555 89 9999999
Q ss_pred ChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceee
Q 016165 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVL 383 (394)
Q Consensus 309 ~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~ 383 (394)
+||+++.+|+++|+ .+|+.. ...+.+.|+.+. .+.++|+++ |+.+.+...|++++|++|+++
T Consensus 166 ----lARAL~~~P~lLLLDEPts~LD~~~---~~~l~~~l~~~~-~~~tvi~vt-----Hd~e~~~~aDri~vl~~G~i~ 232 (390)
T 3gd7_A 166 ----LARSVLSKAKILLLDEPSAHLDPVT---YQIIRRTLKQAF-ADCTVILCE-----ARIEAMLECDQFLVIEENKVR 232 (390)
T ss_dssp ----HHHHHHTTCCEEEEESHHHHSCHHH---HHHHHHHHHTTT-TTSCEEEEC-----SSSGGGTTCSEEEEEETTEEE
T ss_pred ----HHHHHhcCCCEEEEeCCccCCCHHH---HHHHHHHHHHHh-CCCEEEEEE-----cCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999 889865 777777777654 367778777 554444335999999999999
Q ss_pred ecCccceeec
Q 016165 384 NTPEVVRVYI 393 (394)
Q Consensus 384 ~~~~~~~v~~ 393 (394)
..+.+.++|.
T Consensus 233 ~~g~~~el~~ 242 (390)
T 3gd7_A 233 QYDSILELYH 242 (390)
T ss_dssp EESSHHHHHH
T ss_pred EECCHHHHHh
Confidence 9888877763
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.83 E-value=7.3e-22 Score=184.85 Aligned_cols=192 Identities=16% Similarity=0.192 Sum_probs=129.5
Q ss_pred CceeeeeecC-CcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc--
Q 016165 174 PLEVTYRFND-FVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI-- 248 (394)
Q Consensus 174 ~l~~~~~~~~-~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~-- 248 (394)
.-++++.|++ ....++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+....
T Consensus 19 ~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--------p~~G~--I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--------PTGGK--VLLDGEPLVQYDH 88 (271)
T ss_dssp EEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEEGGGBCH
T ss_pred EEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCCE--EEECCEEcccCCH
Confidence 3456667764 114589999999887 999999999999999999999984 33333 33333332111
Q ss_pred ----CCceeeeccCCCCCcccccccccch-----h-h-----hhhcCCccccccc--eee----cCCCCCc-hhhhhhhc
Q 016165 249 ----PGNTVAVQADMPFSGLTTFGTAFLS-----K-F-----ECSQMPHSLLEHI--TLV----DTPGVLS-GEKQRTQR 306 (394)
Q Consensus 249 ----~~~~~~~~~~~~~~g~~~~~~~~~~-----~-~-----~~~~~~~~~l~~~--~l~----Dt~g~ls-Ge~qrv~~ 306 (394)
....+++|....+.. +...+..+. . . .....+.++++.+ ++. ..++.+| ||+||+.
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~- 166 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVA- 166 (271)
T ss_dssp HHHHHHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHH-
T ss_pred HHHhccEEEEecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHH-
Confidence 123344454443432 444443111 0 0 0112233444444 332 3678899 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+||+++.+|+++|+ .+|+.. ...+.++|+.+.+ .+.++|+++ |+.+.+..+|+++++++|
T Consensus 167 ------lAraL~~~p~lllLDEPts~LD~~~---~~~i~~~l~~~~~~~g~tviivt-----Hd~~~~~~~d~v~~l~~G 232 (271)
T 2ixe_A 167 ------LARALIRKPRLLILDNATSALDAGN---QLRVQRLLYESPEWASRTVLLIT-----QQLSLAERAHHILFLKEG 232 (271)
T ss_dssp ------HHHHHTTCCSEEEEESTTTTCCHHH---HHHHHHHHHHCTTTTTSEEEEEC-----SCHHHHTTCSEEEEEETT
T ss_pred ------HHHHHhcCCCEEEEECCccCCCHHH---HHHHHHHHHHHHhhcCCEEEEEe-----CCHHHHHhCCEEEEEECC
Confidence 99999999999999 788765 7788888988864 478888888 777776545999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..+...++
T Consensus 233 ~i~~~g~~~~l 243 (271)
T 2ixe_A 233 SVCEQGTHLQL 243 (271)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99877665543
No 35
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.83 E-value=2.7e-20 Score=190.51 Aligned_cols=244 Identities=55% Similarity=0.995 Sum_probs=147.6
Q ss_pred cccccccccCCcccchhhhhHHHHHHHHHHHhcCCceeeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHh
Q 016165 140 SANWFSSKSSKKISMSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLR 219 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~e~~id~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g 219 (394)
|.+|+...+++.-+.+.+..+++.+...|++++..+...+.+..+....+.+..+...++|+|+|.+|||||||+|.|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~y~~~i~~le~~~~~~~~~~~~l~~~~~~~~~~V~vvG~~n~GKSTLIN~Llg 87 (550)
T 2qpt_A 8 MFSWLKKGGARGQRPEAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLE 87 (550)
T ss_dssp ------------------CCHHHHHHHHHHHHTHHHHHHTTGGGTTCCCCCSTTTSSCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhHHHHhccccccchhcccccccCCcEEEEECCCCCCHHHHHHHHhC
Confidence 67787643332333466777888888888888888876666665544556555555566999999999999999999999
Q ss_pred ccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCch
Q 016165 220 TSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG 299 (394)
Q Consensus 220 ~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsG 299 (394)
....+.+++..|.|++......+......++.+........+.++..++..+.....+.....+.+..+.++||||+.++
T Consensus 88 ~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~ 167 (550)
T 2qpt_A 88 QEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSG 167 (550)
T ss_dssp SCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEECCCHHHHHCEEEECCCBCC-
T ss_pred CccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCc
Confidence 88522268888998886555555443333444433332333333333333233333333344455567899999999887
Q ss_pred hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcc
Q 016165 300 EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSL 379 (394)
Q Consensus 300 e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~ 379 (394)
..+++.+.+.|..+++.++.++|++|+++|+...+.......+++.+...+.++++|+||+|+.+.+++.+....+.+..
T Consensus 168 ~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~~s~ 247 (550)
T 2qpt_A 168 AKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWAL 247 (550)
T ss_dssp ------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhhcch
Confidence 77778777777788999999999999999997645567778888888877889999999999988777766533333333
Q ss_pred ceee
Q 016165 380 GKVL 383 (394)
Q Consensus 380 G~i~ 383 (394)
++++
T Consensus 248 ~~i~ 251 (550)
T 2qpt_A 248 GKVV 251 (550)
T ss_dssp HHHH
T ss_pred hhee
Confidence 4443
No 36
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=99.83 E-value=2.1e-20 Score=156.14 Aligned_cols=95 Identities=31% Similarity=0.453 Sum_probs=89.1
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCC
Q 016165 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGH 87 (394)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g~ 87 (394)
.|.+ ++|+..|+++|..+| |++|+|++++++.+|+++||+.+.|.+||.++|.|++|+||++||+.||+++.++++|.
T Consensus 43 ~W~~-~~e~~~l~~~F~~fD-d~dG~Is~~El~~~l~~~gl~~~el~~I~~~~D~d~dG~Ld~~EF~~am~li~~~~~G~ 120 (139)
T 2jq6_A 43 EWVV-GKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEGH 120 (139)
T ss_dssp CCGG-GGTHHHHHHHHHHSC-CSSSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHTTS
T ss_pred CCCC-hHHHHHHHHHHHHhC-CCCCeECHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHcCC
Confidence 3655 688999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCccCCCCCCCCCccc
Q 016165 88 QVTHDLWNSDVDFQNLKPPAMEG 110 (394)
Q Consensus 88 ~~~~~l~~~~~~~~~~~lp~~~~ 110 (394)
++|.+||+ .+.||+.+.
T Consensus 121 ~lP~~LP~------~l~pps~r~ 137 (139)
T 2jq6_A 121 ELPADLPP------HLVPPSKRR 137 (139)
T ss_dssp CCCSCCCT------TSSCGGGCC
T ss_pred CCCcccCc------ccCCccccc
Confidence 99999998 777777664
No 37
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.82 E-value=1.5e-21 Score=181.69 Aligned_cols=192 Identities=15% Similarity=0.214 Sum_probs=127.3
Q ss_pred cCCceeeeeecCCc-CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc-
Q 016165 172 LKPLEVTYRFNDFV-SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS- 247 (394)
Q Consensus 172 ~~~l~~~~~~~~~~-~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~- 247 (394)
++--++++.|++.. ..++++++|++.+ +++|+||||||||||+++|+|... | .+. +.+.+.+...
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------~-~G~--I~i~g~~i~~~ 86 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--------A-EGD--IKIGGKNVNKY 86 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--------C-EEE--EEETTEEGGGB
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--------C-CeE--EEECCEEhhhc
Confidence 34456677886521 3589999999887 999999999999999999999883 2 232 3344433221
Q ss_pred -----cCCceeeeccCCCCCcccccccccchhh-hhhcCCcccccccee---------------ecCCCCCc-hhhhhhh
Q 016165 248 -----IPGNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHITL---------------VDTPGVLS-GEKQRTQ 305 (394)
Q Consensus 248 -----~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~l---------------~Dt~g~ls-Ge~qrv~ 305 (394)
.....+++|....+. .+...+..+... ...+.+.++++.+++ ...+..+| ||+||+.
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~ 165 (260)
T 2ghi_A 87 NRNSIRSIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIA 165 (260)
T ss_dssp CHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHH
T ss_pred CHHHHhccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHH
Confidence 123455556554443 244444422110 000111112222221 12467889 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+||+++.+|+++|+ .+|+.. ...+.++++.+.+ +.++|+++ |+.+.+..+|+++++++|
T Consensus 166 -------lAraL~~~p~lllLDEPts~LD~~~---~~~i~~~l~~l~~-~~tviivt-----H~~~~~~~~d~i~~l~~G 229 (260)
T 2ghi_A 166 -------IARCLLKDPKIVIFDEATSSLDSKT---EYLFQKAVEDLRK-NRTLIIIA-----HRLSTISSAESIILLNKG 229 (260)
T ss_dssp -------HHHHHHHCCSEEEEECCCCTTCHHH---HHHHHHHHHHHTT-TSEEEEEC-----SSGGGSTTCSEEEEEETT
T ss_pred -------HHHHHHcCCCEEEEECccccCCHHH---HHHHHHHHHHhcC-CCEEEEEc-----CCHHHHHhCCEEEEEECC
Confidence 99999999999999 788765 7788889988865 77888888 555544435899999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..+...++
T Consensus 230 ~i~~~g~~~~l 240 (260)
T 2ghi_A 230 KIVEKGTHKDL 240 (260)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99887665544
No 38
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.81 E-value=2.1e-21 Score=177.42 Aligned_cols=183 Identities=17% Similarity=0.217 Sum_probs=115.3
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCce
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNT 252 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~ 252 (394)
-++++.|++....++++++|++.+ +++|+||||||||||+++|+|... |..++.. +.+ ...
T Consensus 10 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~i~--~~g-------~i~ 72 (229)
T 2pze_A 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--------PSEGKIK--HSG-------RIS 72 (229)
T ss_dssp EEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--------CSEEEEE--ECS-------CEE
T ss_pred EEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--------CCccEEE--ECC-------EEE
Confidence 356677753225699999999877 999999999999999999999983 4444422 221 122
Q ss_pred eeeccCCCCCcccccccccch----h--h-h--hhcCCccccccce------eecCCCCCc-hhhhhhhcccChHHHHHH
Q 016165 253 VAVQADMPFSGLTTFGTAFLS----K--F-E--CSQMPHSLLEHIT------LVDTPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~----~--~-~--~~~~~~~~l~~~~------l~Dt~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
++++....+.+ +..++..+. . . . ......+.++.+. +.+.++.+| ||+||+. +||+
T Consensus 73 ~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~-------lAra 144 (229)
T 2pze_A 73 FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS-------LARA 144 (229)
T ss_dssp EECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH-------HHHH
T ss_pred EEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH-------HHHH
Confidence 33333333332 333332111 0 0 0 0001112222211 122457899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHH-HHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCccce
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRV-ITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~-l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~ 390 (394)
++.+|+++|+ .+|+.. ...+.++ ++.+. .+.++|+++ |+.+.+..+++++++++|+++..+...+
T Consensus 145 l~~~p~lllLDEPts~LD~~~---~~~i~~~l~~~~~-~~~tvi~vt-----H~~~~~~~~d~v~~l~~G~i~~~g~~~~ 215 (229)
T 2pze_A 145 VYKDADLYLLDSPFGYLDVLT---EKEIFESCVCKLM-ANKTRILVT-----SKMEHLKKADKILILHEGSSYFYGTFSE 215 (229)
T ss_dssp HHSCCSEEEEESTTTTSCHHH---HHHHHHHCCCCCT-TTSEEEEEC-----CCHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HhcCCCEEEEECcccCCCHHH---HHHHHHHHHHHhh-CCCEEEEEc-----CChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999 666654 4444443 23332 367777777 7777765459999999999987766554
Q ss_pred e
Q 016165 391 V 391 (394)
Q Consensus 391 v 391 (394)
+
T Consensus 216 ~ 216 (229)
T 2pze_A 216 L 216 (229)
T ss_dssp H
T ss_pred H
Confidence 3
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.81 E-value=1.3e-20 Score=194.82 Aligned_cols=193 Identities=15% Similarity=0.236 Sum_probs=135.5
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc--
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-- 247 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~-- 247 (394)
++--++++.|++..+.+++++++++++ +++|+||||||||||+++|+|.. .|..|+ +.+++.+...
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~--------~p~~G~--i~~~g~~~~~~~ 411 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY--------DVDSGS--ICLDGHDVRDYK 411 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCCE--EEECCEEhhhCC
Confidence 334466778864224699999999887 99999999999999999999998 344444 3334433221
Q ss_pred ----cCCceeeeccCCCCCcccccccccchh--hhhhcCCccccccceeec---------------CCCCCc-hhhhhhh
Q 016165 248 ----IPGNTVAVQADMPFSGLTTFGTAFLSK--FECSQMPHSLLEHITLVD---------------TPGVLS-GEKQRTQ 305 (394)
Q Consensus 248 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~l~D---------------t~g~ls-Ge~qrv~ 305 (394)
.....+++|+...+.+ +..+|..+.. ....+.+.++++.+++.| ....+| ||+||++
T Consensus 412 ~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~ 490 (582)
T 3b5x_A 412 LTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490 (582)
T ss_pred HHHHhcCeEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHH
Confidence 1245566676666654 5555543221 111122233333333322 346788 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+||+++.+|+++|+ .+|+.. ...+.+.++.+.+ ++++|+++ |+.+.+..+|+++++++|
T Consensus 491 -------iAral~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~~-~~tvi~it-----H~~~~~~~~d~i~~l~~G 554 (582)
T 3b5x_A 491 -------IARALLRDAPVLILDEATSALDTES---ERAIQAALDELQK-NKTVLVIA-----HRLSTIEQADEILVVDEG 554 (582)
T ss_pred -------HHHHHHcCCCEEEEECccccCCHHH---HHHHHHHHHHHcC-CCEEEEEe-----cCHHHHHhCCEEEEEECC
Confidence 99999999999999 888876 7778888888765 78888888 777777656999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
+++..|...++
T Consensus 555 ~i~~~g~~~~l 565 (582)
T 3b5x_A 555 EIIERGRHADL 565 (582)
T ss_pred EEEEECCHHHH
Confidence 99988776554
No 40
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.81 E-value=1.6e-21 Score=176.01 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=124.3
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc-ccC
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-SIP 249 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~-~~~ 249 (394)
+--++++.|++ .++++++|++.+ +++|+||||||||||+++|+|... |..++ +.+.+.+.. ...
T Consensus 12 ~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--------p~~G~--I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 12 EIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--------PLKGE--IIYNGVPITKVKG 78 (214)
T ss_dssp EEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--------CSEEE--EEETTEEGGGGGG
T ss_pred EEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCCeE--EEECCEEhhhhcC
Confidence 33466778865 589999999877 999999999999999999999983 43443 333333221 112
Q ss_pred CceeeeccCCCCCcccccccccch-hh----hhhcCCccccccceeec---CCCCCc-hhhhhhhcccChHHHHHHHhhc
Q 016165 250 GNTVAVQADMPFSGLTTFGTAFLS-KF----ECSQMPHSLLEHITLVD---TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (394)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~-~~----~~~~~~~~~l~~~~l~D---t~g~ls-Ge~qrv~~~~~~~~iaral~~~ 320 (394)
...++++....+.+++...+..+. .. ...+.+.++++.+++.+ .+..+| ||+||+. +|++++.+
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~-------laraL~~~ 151 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQ-------LASTLLVN 151 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHH-------HHHHTTSC
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHH-------HHHHHHhC
Confidence 344555655555566665554221 10 11233456677777653 466788 9999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhcccee
Q 016165 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKV 382 (394)
Q Consensus 321 ~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i 382 (394)
|+++|+ .+|+.. ...+.++++.+.+.+.++|+++ |+.+.+..+ ++++ +..|+|
T Consensus 152 p~lllLDEPts~LD~~~---~~~l~~~l~~~~~~g~tiiivt-----Hd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDEDS---KHKVLKSILEILKEKGIVIISS-----REELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp CSEEEEESTTTTSCTTT---HHHHHHHHHHHHHHHSEEEEEE-----SSCCTTSSEEEEGG-GGBC--
T ss_pred CCEEEEECCCcCCCHHH---HHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEE-EeCCcc
Confidence 999999 899887 8889999999876678888888 555555555 4444 444555
No 41
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=99.81 E-value=1.2e-19 Score=141.64 Aligned_cols=87 Identities=26% Similarity=0.494 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCC
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQ 88 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g~~ 88 (394)
|.+|++|+..|.++|..+|+|++|+|+.++++.+|.+.|++.+.+.+||..+|.|++|.++++||+.+|+++.++++|.+
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~ 80 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGYD 80 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCC
Q 016165 89 VTHDLWN 95 (394)
Q Consensus 89 ~~~~l~~ 95 (394)
+|.+||+
T Consensus 81 lp~~lp~ 87 (92)
T 1fi6_A 81 LPEKLPE 87 (92)
T ss_dssp CCCCSCS
T ss_pred CCccCCH
Confidence 9999998
No 42
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=99.80 E-value=9.7e-20 Score=143.10 Aligned_cols=94 Identities=29% Similarity=0.414 Sum_probs=89.3
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-hcC
Q 016165 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV-QDG 86 (394)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~-~~g 86 (394)
.|.+|+++++.|.++|..+|.|++|+|+.++++.+|.+.|++.+.+.+||..+|.|++|.++++||+.+|+++.++ ++|
T Consensus 1 ~w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~~g 80 (95)
T 1c07_A 1 TWVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQKLIKG 80 (95)
T ss_dssp CCSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHHHHHTSC
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred CCCCccCCCCccCCCCCCCCC
Q 016165 87 HQVTHDLWNSDVDFQNLKPPA 107 (394)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~lp~ 107 (394)
.++|.+||+ .+.||+
T Consensus 81 ~~lP~~lP~------~l~pp~ 95 (95)
T 1c07_A 81 IDPPHVLTP------EMIPPS 95 (95)
T ss_dssp CCCCSSCCT------TTSCCC
T ss_pred CCCCCcCCc------cccCCC
Confidence 999999998 666653
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.80 E-value=2.2e-20 Score=193.61 Aligned_cols=193 Identities=17% Similarity=0.228 Sum_probs=133.9
Q ss_pred CCceeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc-
Q 016165 173 KPLEVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI- 248 (394)
Q Consensus 173 ~~l~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~- 248 (394)
+--++++.|++. ...++++++|++++ +++|+||||||||||+++|+|.. .|..|+ +.+++.+....
T Consensus 343 ~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--------~p~~G~--i~~~g~~i~~~~ 412 (595)
T 2yl4_A 343 EFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY--------DPASGT--ISLDGHDIRQLN 412 (595)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS--------CCSEEE--EEETTEETTTBC
T ss_pred EEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--------CCCCcE--EEECCEEhhhCC
Confidence 334567788642 13589999999887 99999999999999999999998 344444 44455443322
Q ss_pred -----CCceeeeccCCCCCcccccccccchhh----hhhcCCccccccceee---------------cCCCCCc-hhhhh
Q 016165 249 -----PGNTVAVQADMPFSGLTTFGTAFLSKF----ECSQMPHSLLEHITLV---------------DTPGVLS-GEKQR 303 (394)
Q Consensus 249 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~l~---------------Dt~g~ls-Ge~qr 303 (394)
....++.|+...+.+ +..+|..+... ...+.+.++++.+++. +.+..+| ||+||
T Consensus 413 ~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qr 491 (595)
T 2yl4_A 413 PVWLRSKIGTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491 (595)
T ss_dssp HHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHH
T ss_pred HHHHHhceEEEccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHH
Confidence 134556666665654 55555422110 1112223333333321 1346788 99999
Q ss_pred hhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhc
Q 016165 304 TQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWS 378 (394)
Q Consensus 304 v~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~ 378 (394)
++ +||+++++|+++|+ .+|+.. ...+.+.++++.+ ++++|+++ |+.+.+..+|++++++
T Consensus 492 v~-------iAral~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~~-~~tvi~it-----H~~~~~~~~d~i~~l~ 555 (595)
T 2yl4_A 492 IA-------IARALLKNPKILLLDEATSALDAEN---EYLVQEALDRLMD-GRTVLVIA-----HRLSTIKNANMVAVLD 555 (595)
T ss_dssp HH-------HHHHHHHCCSEEEEECCCSSCCHHH---HHHHHHHHHHHHT-TSEEEEEC-----CCHHHHHHSSEEEEEE
T ss_pred HH-------HHHHHHcCCCEEEEECcccCCCHHH---HHHHHHHHHHHhc-CCEEEEEe-----cCHHHHHcCCEEEEEE
Confidence 99 99999999999999 788765 7778888888866 67888888 7777776669999999
Q ss_pred cceeeecCccceee
Q 016165 379 LGKVLNTPEVVRVY 392 (394)
Q Consensus 379 ~G~i~~~~~~~~v~ 392 (394)
+|+++..|...+++
T Consensus 556 ~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 556 QGKITEYGKHEELL 569 (595)
T ss_dssp TTEEEEEECSCC--
T ss_pred CCEEEEECCHHHHH
Confidence 99999877766654
No 44
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.80 E-value=3.4e-21 Score=176.92 Aligned_cols=183 Identities=17% Similarity=0.212 Sum_probs=115.4
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCce
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNT 252 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~ 252 (394)
-++++.|++....++++++|++.+ +++|+||||||||||+++|+|.. .|..++. .+.+ ...
T Consensus 7 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~I--~~~g-------~i~ 69 (237)
T 2cbz_A 7 RNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM--------DKVEGHV--AIKG-------SVA 69 (237)
T ss_dssp EEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS--------EEEEEEE--EECS-------CEE
T ss_pred EEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCceE--EECC-------EEE
Confidence 356778863225699999999887 99999999999999999999998 4544442 2222 123
Q ss_pred eeeccCCCCCcccccccccchh---hhhhcCC---ccccccce---------eecCCCCCc-hhhhhhhcccChHHHHHH
Q 016165 253 VAVQADMPFSGLTTFGTAFLSK---FECSQMP---HSLLEHIT---------LVDTPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~---~~~l~~~~---------l~Dt~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
+++|... +...+...+..+.. ......+ .++++.++ +...+..+| ||+||+. +||+
T Consensus 70 ~v~Q~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~-------lAra 141 (237)
T 2cbz_A 70 YVPQQAW-IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVS-------LARA 141 (237)
T ss_dssp EECSSCC-CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHH-------HHHH
T ss_pred EEcCCCc-CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHH-------HHHH
Confidence 3334332 22233333331110 0000000 11111111 234678899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHH---HHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCcc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVIT---SLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEV 388 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~---~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~ 388 (394)
++.+|+++|+ .+|+.. ...+.+++. .+. ++.++|+++ |+.+.+..+|+++++++|+++..+..
T Consensus 142 L~~~p~lllLDEPts~LD~~~---~~~i~~~l~~~~~~~-~~~tviivt-----H~~~~~~~~d~v~~l~~G~i~~~g~~ 212 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHV---GKHIFENVIGPKGML-KNKTRILVT-----HSMSYLPQVDVIIVMSGGKISEMGSY 212 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHH---HHHHHHHTTSTTSTT-TTSEEEEEC-----SCSTTGGGSSEEEEEETTEEEEEECH
T ss_pred HhcCCCEEEEeCcccccCHHH---HHHHHHHHHHHHhhc-CCCEEEEEe-----cChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 9999999999 677654 555556553 222 477888888 44444433489999999999877665
Q ss_pred cee
Q 016165 389 VRV 391 (394)
Q Consensus 389 ~~v 391 (394)
.++
T Consensus 213 ~~~ 215 (237)
T 2cbz_A 213 QEL 215 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 45
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.79 E-value=1.7e-23 Score=210.41 Aligned_cols=218 Identities=17% Similarity=0.212 Sum_probs=125.3
Q ss_pred CccCCCCccCCCCCCCCCccccchhhhhcccCCCCCCCC-CCCCCCCCCCccccccccccCCcc--cchhhhhHHHHHH-
Q 016165 90 THDLWNSDVDFQNLKPPAMEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKI--SMSSVTSIIDGLK- 165 (394)
Q Consensus 90 ~~~l~~~~~~~~~~~lp~~~~l~~~i~a~t~~~~~~a~~-~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~id~~~- 165 (394)
|-|+..+||.|+++||.++|++.|+|.|+|+.+++.|++ |+|.++. ++..| |+.+ .++.+|+.||+.+
T Consensus 125 pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~l~G~ls~---~i~~l-----r~~L~~~~a~iea~iDf~ee 196 (476)
T 3gee_A 125 PGEFTRRAFLNGRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSV---RLGGL-----REQLIRSCALIELELDFSEE 196 (476)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHHHHTHHHH---HHHHH-----HTHHHHHHHTTTTCSSCCSS
T ss_pred CcchhhhhhccCcCcHHHHHHHHHHHhCCCHHHHHHHHHhhCCcHHH---HHHHH-----HHHHHHHHHHhheecCCCcc
Confidence 445566678889999999999999999999999999999 9996554 57888 8888 7888888887321
Q ss_pred -------HHHHHhcCCceeeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEE
Q 016165 166 -------RLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVV 238 (394)
Q Consensus 166 -------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i 238 (394)
..+...+..+.... .......-++-.++.+..|+|+|++|||||||+|.|++... ++++..|+++++.+
T Consensus 197 di~~~~~~~l~~~i~~l~~~l--~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~--a~vs~~~gtT~d~~ 272 (476)
T 3gee_A 197 DVEFQSRDELTMQIETLRSEV--NRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQER--AIVSHMPGTTRDYI 272 (476)
T ss_dssp CCSSSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHHHHCC--------------------
T ss_pred cccchhHHHHHHHHHHHHHHH--HHHHHHHHhhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCceEEEE
Confidence 11222222211100 00000000001112334799999999999999999999875 77888888887643
Q ss_pred EEecCcccccCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCch----hhhhhhcccChHHHH
Q 016165 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG----EKQRTQRAYDFTGVT 314 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsG----e~qrv~~~~~~~~ia 314 (394)
. ..+.+.|. .+.++||||+... +..++. .+
T Consensus 273 ~-----------------~~i~~~g~----------------------~l~liDT~G~~~~~~~ve~~gi~-------~~ 306 (476)
T 3gee_A 273 E-----------------ECFIHDKT----------------------MFRLTDTAGLREAGEEIEHEGIR-------RS 306 (476)
T ss_dssp C-----------------EEEEETTE----------------------EEEEEC--------------------------
T ss_pred E-----------------EEEEECCe----------------------EEEEEECCCCCcchhHHHHHHHH-------HH
Confidence 1 01111222 6789999999761 222223 23
Q ss_pred HHHhhcCCEEEEEeCCCCCCchH---HHHHHHHHHhcCCCeEEEEEecCCccCHHH
Q 016165 315 SWFAAKCDLILLLFDPHKLDISD---EFKRVITSLRGHDDKIRVVLNKADQVDTQQ 367 (394)
Q Consensus 315 ral~~~~dllLl~lD~~~~~~~~---~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~ 367 (394)
...+.++|++|+++|++...... ...++++.+. +.|+++|.||+|+.+...
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD 360 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc
Confidence 44578999999999998733221 4556666654 689999999999976543
No 46
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.79 E-value=1.4e-20 Score=194.65 Aligned_cols=191 Identities=16% Similarity=0.204 Sum_probs=133.3
Q ss_pred CceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc---
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI--- 248 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~--- 248 (394)
--++++.|++..+.+++++++++++ +++|+||||||||||+++|+|.. .|..|+ +.+++.+....
T Consensus 344 ~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--------~p~~G~--i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 344 FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY--------DIDEGH--ILMDGHDLREYTLA 413 (582)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT--------CCSEEE--EEETTEETTTBCHH
T ss_pred EEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc--------CCCCCe--EEECCEEccccCHH
Confidence 3456677864224699999999887 99999999999999999999998 344444 44455443322
Q ss_pred ---CCceeeeccCCCCCcccccccccchh--hhhhcCCccccccceeec---------------CCCCCc-hhhhhhhcc
Q 016165 249 ---PGNTVAVQADMPFSGLTTFGTAFLSK--FECSQMPHSLLEHITLVD---------------TPGVLS-GEKQRTQRA 307 (394)
Q Consensus 249 ---~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~l~D---------------t~g~ls-Ge~qrv~~~ 307 (394)
....+++|+...+.+ +..+|..+.. ....+...++++.+++.| ....+| ||+||++
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~-- 490 (582)
T 3b60_A 414 SLRNQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA-- 490 (582)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHH--
T ss_pred HHHhhCeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHH--
Confidence 135566777666654 5555553221 111122233333333322 346788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++++|+++|+ .+|+.. ...+.+.++++.+ ++++|+++ |+.+.+..+|+++++++|++
T Consensus 491 -----iAral~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~~-~~tvi~it-----H~~~~~~~~d~i~~l~~G~i 556 (582)
T 3b60_A 491 -----IARALLRDSPILILDEATSALDTES---ERAIQAALDELQK-NRTSLVIA-----HRLSTIEQADEIVVVEDGII 556 (582)
T ss_dssp -----HHHHHHHCCSEEEEETTTSSCCHHH---HHHHHHHHHHHHT-TSEEEEEC-----SCGGGTTTCSEEEEEETTEE
T ss_pred -----HHHHHHhCCCEEEEECccccCCHHH---HHHHHHHHHHHhC-CCEEEEEe-----ccHHHHHhCCEEEEEECCEE
Confidence 99999999999999 788765 7778888888865 78888888 55555544599999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..|...++
T Consensus 557 ~~~g~~~~l 565 (582)
T 3b60_A 557 VERGTHSEL 565 (582)
T ss_dssp EEEECHHHH
T ss_pred EEecCHHHH
Confidence 987766544
No 47
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=99.79 E-value=2e-19 Score=142.36 Aligned_cols=92 Identities=25% Similarity=0.518 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQVTHD 92 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g~~~~~~ 92 (394)
+++++.|.++|..+|+|++|+|++++++.+|.++|++.+.+.+||..+|.|++|.++++||+.+|+++.++|+|.++|++
T Consensus 7 ~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~~~~~ 86 (99)
T 1qjt_A 7 SSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSLS 86 (99)
T ss_dssp TTTCTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSSGG
T ss_pred hhhHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcCCCCChh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCccCCCCCCCCCcc
Q 016165 93 LWNSDVDFQNLKPPAME 109 (394)
Q Consensus 93 l~~~~~~~~~~~lp~~~ 109 (394)
+++ ..+|||++.
T Consensus 87 ~l~-----~~~p~p~~~ 98 (99)
T 1qjt_A 87 SLS-----LAVPPPRFH 98 (99)
T ss_dssp GCS-----SCCCCCSSC
T ss_pred hcc-----CCCCCCCCC
Confidence 777 689999875
No 48
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=99.79 E-value=7.4e-20 Score=147.65 Aligned_cols=99 Identities=27% Similarity=0.428 Sum_probs=92.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Q 016165 5 TGPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (394)
Q Consensus 5 ~~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~ 84 (394)
+...|.+|++++..|.++|..+|+|++|+|++++++.+|.++|++.+.+.+||..+|.|++|.++++||+.+|+++.+++
T Consensus 10 ~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~~~~~ 89 (110)
T 1iq3_A 10 PDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLIVARK 89 (110)
T ss_dssp CCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHH
Confidence 34559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCCCccCCCCCCCCCcc
Q 016165 85 DGHQVTHDLWNSDVDFQNLKPPAME 109 (394)
Q Consensus 85 ~g~~~~~~l~~~~~~~~~~~lp~~~ 109 (394)
+|.++|..||+ .+-||.++
T Consensus 90 ~G~~lP~~LP~------~l~pp~~~ 108 (110)
T 1iq3_A 90 NGYPLPEGLPP------TLQPEFIV 108 (110)
T ss_dssp HTCCCCCCSSC------CSCSSCCC
T ss_pred cCCCCCcccCh------hhCcCccc
Confidence 99999999998 77777654
No 49
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=2.9e-20 Score=192.67 Aligned_cols=191 Identities=18% Similarity=0.240 Sum_probs=133.8
Q ss_pred CCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC-
Q 016165 173 KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP- 249 (394)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~- 249 (394)
+--++++.|++. ..+++|+++++++ +++|+||||||||||+++|+|.. .|..|+ +.+++.+....+
T Consensus 356 ~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~--------~p~~G~--i~~~g~~i~~~~~ 424 (598)
T 3qf4_B 356 EFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY--------DVDRGQ--ILVDGIDIRKIKR 424 (598)
T ss_dssp EEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS--------CCSEEE--EEETTEEGGGSCH
T ss_pred EEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc--------CCCCeE--EEECCEEhhhCCH
Confidence 334566777642 4699999999887 99999999999999999999999 444444 444555443322
Q ss_pred -----CceeeeccCCCCCcccccccccchhh-hhhcCCccccccceeec----C-----------CCCCc-hhhhhhhcc
Q 016165 250 -----GNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHITLVD----T-----------PGVLS-GEKQRTQRA 307 (394)
Q Consensus 250 -----~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~l~D----t-----------~g~ls-Ge~qrv~~~ 307 (394)
...++.|+...+.+ +..+|..+... ...+...+.++..++.+ . ...+| ||+||++
T Consensus 425 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~-- 501 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA-- 501 (598)
T ss_dssp HHHHHHEEEECTTCCCCSS-BHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHH--
T ss_pred HHHHhceEEEeCCCccccc-cHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHH--
Confidence 34556677666654 55555432211 11111222333333321 2 25688 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++++|+++|+ .+|+.. ...+.+.++.+. +++++|+|+ |+.+.+..+|+++++++|++
T Consensus 502 -----iAral~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~-~~~t~i~it-----H~l~~~~~~d~i~~l~~G~i 567 (598)
T 3qf4_B 502 -----ITRAFLANPKILILDEATSNVDTKT---EKSIQAAMWKLM-EGKTSIIIA-----HRLNTIKNADLIIVLRDGEI 567 (598)
T ss_dssp -----HHHHHHTCCSEEEECCCCTTCCHHH---HHHHHHHHHHHH-TTSEEEEES-----CCTTHHHHCSEEEEECSSSE
T ss_pred -----HHHHHhcCCCEEEEECCccCCCHHH---HHHHHHHHHHHc-CCCEEEEEe-----cCHHHHHcCCEEEEEECCEE
Confidence 99999999999998 677665 677788888875 478888888 66666666799999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
+..|...++
T Consensus 568 ~~~g~~~~l 576 (598)
T 3qf4_B 568 VEMGKHDEL 576 (598)
T ss_dssp EECSCHHHH
T ss_pred EEECCHHHH
Confidence 998877654
No 50
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=2.1e-20 Score=193.28 Aligned_cols=193 Identities=20% Similarity=0.289 Sum_probs=135.9
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
++--++++.|++....++++++|++++ +++|+||||||||||+++|+|.. .|..++ +.+++.+...++
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~--------~~~~G~--i~i~g~~i~~~~ 411 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI--------DPERGR--VEVDELDVRTVK 411 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS--------CCSEEE--EEESSSBGGGBC
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--------cCCCcE--EEECCEEcccCC
Confidence 344566778854336799999999887 99999999999999999999999 444444 455666544332
Q ss_pred ------CceeeeccCCCCCcccccccccchhh-----hhh-----cCCccccccc------eeecCCCCCc-hhhhhhhc
Q 016165 250 ------GNTVAVQADMPFSGLTTFGTAFLSKF-----ECS-----QMPHSLLEHI------TLVDTPGVLS-GEKQRTQR 306 (394)
Q Consensus 250 ------~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~-----~~~~~~l~~~------~l~Dt~g~ls-Ge~qrv~~ 306 (394)
...++.|+...+.+ +..+|..+... +.. ....+.++.+ .+.+.+..+| ||+||+.
T Consensus 412 ~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~- 489 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS- 489 (587)
T ss_dssp HHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH-
T ss_pred HHHHHhheEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHH-
Confidence 34556677666655 55555422110 000 0111111111 1223567788 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++++|+++|+ .+|+.. ...+.+.++.+. +++++|+|+ |+.+.+..+|+++++++|+
T Consensus 490 ------lARal~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~-~~~tvi~it-----H~l~~~~~~d~i~vl~~G~ 554 (587)
T 3qf4_A 490 ------IARALVKKPKVLILDDCTSSVDPIT---EKRILDGLKRYT-KGCTTFIIT-----QKIPTALLADKILVLHEGK 554 (587)
T ss_dssp ------HHHHHHTCCSEEEEESCCTTSCHHH---HHHHHHHHHHHS-TTCEEEEEE-----SCHHHHTTSSEEEEEETTE
T ss_pred ------HHHHHHcCCCEEEEECCcccCCHHH---HHHHHHHHHHhC-CCCEEEEEe-----cChHHHHhCCEEEEEECCE
Confidence 99999999999999 777765 677788888775 478889988 7777776569999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
+++.|+..++
T Consensus 555 i~~~g~~~el 564 (587)
T 3qf4_A 555 VAGFGTHKEL 564 (587)
T ss_dssp EEEEECHHHH
T ss_pred EEEECCHHHH
Confidence 9988876654
No 51
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.78 E-value=1.6e-20 Score=193.85 Aligned_cols=193 Identities=17% Similarity=0.253 Sum_probs=133.4
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
++--++++.|++....+++|+++++++ +++|+||||||||||+++|+|.. .|..|+ +.+++.+....+
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~--------~p~~G~--i~~~g~~~~~~~ 409 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY--------DVTSGQ--ILIDGHNIKDFL 409 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS--------CCSEEE--EEETTEEGGGSC
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC--------CCCCcE--EEECCEEhhhCC
Confidence 344456778865335699999999887 99999999999999999999999 454444 444555443322
Q ss_pred ------CceeeeccCCCCCcccccccccchhh-hhhcCCcccccccee---------------ecCCCCCc-hhhhhhhc
Q 016165 250 ------GNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHITL---------------VDTPGVLS-GEKQRTQR 306 (394)
Q Consensus 250 ------~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~l---------------~Dt~g~ls-Ge~qrv~~ 306 (394)
...++.|+...+.+ +..+|..+... ...+...+.++..++ .+....+| ||+||+.
T Consensus 410 ~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~- 487 (578)
T 4a82_A 410 TGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS- 487 (578)
T ss_dssp HHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH-
T ss_pred HHHHhhheEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHH-
Confidence 45667777766665 55555532211 000111111111111 12345788 9999999
Q ss_pred ccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 307 ~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+||+++.+|+++|+ .+|+.. ...+.+.++.+.+ ++++++|+ |+.+.+..+|+++++++|+
T Consensus 488 ------lAral~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~~-~~t~i~it-----H~l~~~~~~d~i~~l~~G~ 552 (578)
T 4a82_A 488 ------IARIFLNNPPILILDEATSALDLES---ESIIQEALDVLSK-DRTTLIVA-----HRLSTITHADKIVVIENGH 552 (578)
T ss_dssp ------HHHHHHHCCSEEEEESTTTTCCHHH---HHHHHHHHHHHTT-TSEEEEEC-----SSGGGTTTCSEEEEEETTE
T ss_pred ------HHHHHHcCCCEEEEECccccCCHHH---HHHHHHHHHHHcC-CCEEEEEe-----cCHHHHHcCCEEEEEECCE
Confidence 99999999999999 777765 6677788877754 67888888 5555555569999999999
Q ss_pred eeecCcccee
Q 016165 382 VLNTPEVVRV 391 (394)
Q Consensus 382 i~~~~~~~~v 391 (394)
+++.|...++
T Consensus 553 i~~~g~~~el 562 (578)
T 4a82_A 553 IVETGTHREL 562 (578)
T ss_dssp EEEEECHHHH
T ss_pred EEEECCHHHH
Confidence 9988876654
No 52
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.77 E-value=1.1e-22 Score=203.72 Aligned_cols=215 Identities=17% Similarity=0.249 Sum_probs=135.6
Q ss_pred CccCCCCccCCCCCCCCCccccchhhhhcccCCCCCCCC-CCCCCCCCCCccccccccccCCcc--cchhhhhHHHHHH-
Q 016165 90 THDLWNSDVDFQNLKPPAMEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKI--SMSSVTSIIDGLK- 165 (394)
Q Consensus 90 ~~~l~~~~~~~~~~~lp~~~~l~~~i~a~t~~~~~~a~~-~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~id~~~- 165 (394)
|-|+..+||.|+++||.++|++.++|+|+|+.+++.|++ ++|.++. .+..| |+++ .++.+|+.||+.+
T Consensus 117 pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~l~g~~~~---~~~~~-----r~~l~~~~a~iEa~iDf~ed 188 (462)
T 3geh_A 117 PGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAH---PIRQL-----RANCLDILAEIEARIDFEED 188 (462)
T ss_dssp TTHHHHHHHHTTSCCHHHHHHHHHHHHCCSHHHHHHHHHHHHTTTHH---HHHHH-----HHHHHHHHHHHHHHTTSSSS
T ss_pred CchhhhhHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHHhchhHHH---HHHHH-----HHHHHHHHHHHHhhcccccc
Confidence 334455566779999999999999999999999999999 9996555 57888 8787 7899999988421
Q ss_pred ------HHHHHhcCCceeeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEE
Q 016165 166 ------RLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVV 239 (394)
Q Consensus 166 ------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~ 239 (394)
..+...+..+... ........-++..++.+..|+|+|++|||||||+|.|++... .+++..|+++++.+.
T Consensus 189 ~~~~~~~~~~~~i~~l~~~--l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~--a~v~~~~gtT~d~~~ 264 (462)
T 3geh_A 189 LPPLDDEAIISDIENIAAE--ISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDR--AIVTDLPGTTRDVVE 264 (462)
T ss_dssp SCCCCTTTHHHHHHHHHHH--HHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHB--SCCSCCTTCCHHHHH
T ss_pred CChhhHHHHHHHHHHHHHH--HHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCc--ccccCCCCeeEEEEE
Confidence 1111111111000 000000000001112234799999999999999999999875 678888888775320
Q ss_pred EecCcccccCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCch----hhhhhhcccChHHHHH
Q 016165 240 MSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG----EKQRTQRAYDFTGVTS 315 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsG----e~qrv~~~~~~~~iar 315 (394)
..+.+.|. .+.++||||+.+. +..++. .++
T Consensus 265 -----------------~~i~~~g~----------------------~v~liDT~G~~~~~~~ve~~gi~-------~~~ 298 (462)
T 3geh_A 265 -----------------SQLVVGGI----------------------PVQVLDTAGIRETSDQVEKIGVE-------RSR 298 (462)
T ss_dssp -----------------HEEEETTE----------------------EEEECC---------------------------
T ss_pred -----------------EEEEECCE----------------------EEEEEECCccccchhHHHHHHHH-------HHh
Confidence 01111222 6789999998661 222223 233
Q ss_pred HHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 316 WFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 316 al~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
..+.++|++|+++|++. .......++++.+.. .|+++|.||+|+...
T Consensus 299 ~~~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 299 QAANTADLVLLTIDAAT-GWTTGDQEIYEQVKH--RPLILVMNKIDLVEK 345 (462)
T ss_dssp CCCCSCSEEEEEEETTT-CSCHHHHHHHHHHTT--SCEEEEEECTTSSCG
T ss_pred hhhhcCCEEEEEeccCC-CCCHHHHHHHHhccC--CcEEEEEECCCCCcc
Confidence 45789999999999986 334555667776654 699999999998654
No 53
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.77 E-value=2.9e-20 Score=173.03 Aligned_cols=185 Identities=17% Similarity=0.161 Sum_probs=123.9
Q ss_pred eeeeeecCC--cCcccccCCCCc-ccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccc---ccC
Q 016165 176 EVTYRFNDF--VSPLLTNSDFDA-KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---SIP 249 (394)
Q Consensus 176 ~~~~~~~~~--~~~~l~~~~~~~-~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~---~~~ 249 (394)
++++.|++. .+.++++++|++ +.+++|+||||||||||+++|+|.. |. .++ +.+.+.+.. ...
T Consensus 6 ~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--------~G~--I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 6 NVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PY--------SGN--IFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CC--------EEE--EEETTEEGGGCSCCT
T ss_pred EEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CC--------CcE--EEECCEECcchHHhh
Confidence 455666531 134899988766 5699999999999999999999987 51 111 222222211 012
Q ss_pred Cce-eeeccCCCCCcccccccccchh---hhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHHhh
Q 016165 250 GNT-VAVQADMPFSGLTTFGTAFLSK---FECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (394)
Q Consensus 250 ~~~-~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral~~ 319 (394)
... +++|.... ..+...+..+.. ....+.+.++++.+++. + .++.+| ||+||+. +||+++.
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~-------lAraL~~ 145 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVR-------TSLALAS 145 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHH-------HHHHHHT
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHH-------HHHHHHh
Confidence 233 44444322 444444442211 11123355677777776 4 678899 9999999 9999999
Q ss_pred cCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-H-hHhhhccceeeecCcccee
Q 016165 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-Y-GALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 320 ~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~-~~~~~~~G~i~~~~~~~~v 391 (394)
+|+++|+ .+|+.. ...+.++++.+.+ ++|+++ |+.+.+..+ + +++++++|+++..+.+.++
T Consensus 146 ~p~lllLDEPts~LD~~~---~~~l~~~L~~~~~---tviivt-----Hd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAAR---RHVISRYIKEYGK---EGILVT-----HELDMLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp CCSEEEEECTTTTCCHHH---HHHHHHHHHHSCS---EEEEEE-----SCGGGGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred CCCEEEEECCccccCHHH---HHHHHHHHHHhcC---cEEEEE-----cCHHHHHHhcCceEEEEECCEEEEecCHHHH
Confidence 9999999 777765 6777788877654 777777 776666555 8 9999999999877665544
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.74 E-value=1.5e-19 Score=170.51 Aligned_cols=172 Identities=17% Similarity=0.254 Sum_probs=106.1
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSG 263 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g 263 (394)
..++++++|++.+ +++|+||||||||||+++|+|.. .|..++.. +.+ ...++++....+.+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~--------~p~~G~I~--~~g-------~i~~v~Q~~~l~~~ 113 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--------EPSEGKIK--HSG-------RISFCSQNSWIMPG 113 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS--------CEEEEEEE--CCS-------CEEEECSSCCCCSS
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--------CCCCcEEE--ECC-------EEEEEeCCCccCcc
Confidence 4589999999877 99999999999999999999998 34444321 111 12233333322222
Q ss_pred cccccccc---chhh---hh--hcCCccccccce------eecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE--
Q 016165 264 LTTFGTAF---LSKF---EC--SQMPHSLLEHIT------LVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-- 326 (394)
Q Consensus 264 ~~~~~~~~---~~~~---~~--~~~~~~~l~~~~------l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-- 326 (394)
+...+.. .... .. .....+.++.+. +.+.++.+| ||+||+. +||+++.+|+++|+
T Consensus 114 -tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~-------lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 114 -TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS-------LARAVYKDADLYLLDS 185 (290)
T ss_dssp -BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHH-------HHHHHHSCCSEEEEES
T ss_pred -cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHH-------HHHHHHCCCCEEEEEC
Confidence 2222221 0000 00 000111111111 122457899 9999999 99999999999999
Q ss_pred ---EeCCCCCCchHHHHHH-HHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCcccee
Q 016165 327 ---LFDPHKLDISDEFKRV-ITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRV 391 (394)
Q Consensus 327 ---~lD~~~~~~~~~~~~~-l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~v 391 (394)
++|+.. ...+.++ ++.+. .+.++|+++ |+.+.+..+++++++++|+++..+...++
T Consensus 186 Pts~LD~~~---~~~i~~~ll~~~~-~~~tviivt-----Hd~~~~~~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 186 PFGYLDVLT---EKEIFESCVCKLM-ANKTRILVT-----SKMEHLKKADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp TTTTCCHHH---HHHHHHHCCCCCT-TTSEEEEEC-----CCHHHHHHSSEEEEEETTEEEEEECHHHH
T ss_pred CcccCCHHH---HHHHHHHHHHHhh-CCCEEEEEe-----cCHHHHHcCCEEEEEECCeEEEeCCHHHH
Confidence 677654 4555553 22332 367788887 77777654599999999999877665443
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.72 E-value=3.8e-19 Score=198.72 Aligned_cols=193 Identities=15% Similarity=0.210 Sum_probs=135.0
Q ss_pred cCCceeeeeecCCc-CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc
Q 016165 172 LKPLEVTYRFNDFV-SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~~-~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~ 248 (394)
++.-+++++|++.. ..+|+|+||++++ +|||+|++|||||||+++|+|.+ .|..|+ |.++|.+...+
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~--------~p~~G~--I~iDG~di~~i 1146 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY--------DTLGGE--IFIDGSEIKTL 1146 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS--------CCSSSE--EEETTEETTTB
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc--------cCCCCE--EEECCEEhhhC
Confidence 44457788886432 3599999999988 99999999999999999999999 566666 55677766554
Q ss_pred C------CceeeeccCCCCCcccccccccch---hhhhhcCCccccccceee---------------cCCCCCc-hhhhh
Q 016165 249 P------GNTVAVQADMPFSGLTTFGTAFLS---KFECSQMPHSLLEHITLV---------------DTPGVLS-GEKQR 303 (394)
Q Consensus 249 ~------~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~l~---------------Dt~g~ls-Ge~qr 303 (394)
+ ..++++|+.+.|.| +...|+.+. .....+...++++..++. +--..+| ||+||
T Consensus 1147 ~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQr 1225 (1321)
T 4f4c_A 1147 NPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQR 1225 (1321)
T ss_dssp CHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHH
T ss_pred CHHHHHhheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHH
Confidence 3 56778899988877 444454211 110111112222222221 1223467 89999
Q ss_pred hhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhc
Q 016165 304 TQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWS 378 (394)
Q Consensus 304 v~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~ 378 (394)
++ +|||++++|+++|+ .+|..+ ...+.+.|+++. +++++|+|. |...-+..+|++++++
T Consensus 1226 ia-------iARAllr~~~ILiLDEaTSaLD~~t---E~~Iq~~l~~~~-~~~TvI~IA-----HRLsTi~~aD~I~Vld 1289 (1321)
T 4f4c_A 1226 IA-------IARALVRNPKILLLDEATSALDTES---EKVVQEALDRAR-EGRTCIVIA-----HRLNTVMNADCIAVVS 1289 (1321)
T ss_dssp HH-------HHHHHHSCCSEEEEESCCCSTTSHH---HHHHHHHHTTTS-SSSEEEEEC-----SSSSTTTTCSEEEEES
T ss_pred HH-------HHHHHHhCCCEEEEeCccccCCHHH---HHHHHHHHHHHc-CCCEEEEec-----cCHHHHHhCCEEEEEE
Confidence 99 99999999999999 677654 444555554433 378999999 4444556679999999
Q ss_pred cceeeecCcccee
Q 016165 379 LGKVLNTPEVVRV 391 (394)
Q Consensus 379 ~G~i~~~~~~~~v 391 (394)
+|++++.|...++
T Consensus 1290 ~G~IvE~Gth~eL 1302 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQL 1302 (1321)
T ss_dssp SSSEEEEECHHHH
T ss_pred CCEEEEECCHHHH
Confidence 9999998877665
No 56
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=131.59 Aligned_cols=99 Identities=26% Similarity=0.446 Sum_probs=93.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcC
Q 016165 7 PIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDG 86 (394)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g 86 (394)
+.|.+|++++..|.++|..+|.|++|+|+.++.+.+|...+++.+.+.+||..+|.|++|.++++||+.+|+++..+++|
T Consensus 4 ~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~~~~~~~G 83 (111)
T 2kgr_A 4 AEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLIDVAMSG 83 (111)
T ss_dssp CCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCccCCCCCCCCCcccc
Q 016165 87 HQVTHDLWNSDVDFQNLKPPAMEGL 111 (394)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~lp~~~~l 111 (394)
.++|..||+ .+.+|+.+..
T Consensus 84 ~~lp~~lp~------~l~pps~~~~ 102 (111)
T 2kgr_A 84 QPLPPVLPP------EYIPPSFRRV 102 (111)
T ss_dssp CCCCSSCCG------GGSCTTTTCC
T ss_pred CCCccccCc------ccCCCccCCC
Confidence 999999887 7777766544
No 57
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.69 E-value=4.9e-20 Score=185.41 Aligned_cols=213 Identities=18% Similarity=0.286 Sum_probs=139.8
Q ss_pred ccCCCCccCCCCCCCCCccccchhhhhcccCCCCCCCC-CCCCCCCCCCccccccccccCCcc--cchhhhhHHHHHHH-
Q 016165 91 HDLWNSDVDFQNLKPPAMEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKI--SMSSVTSIIDGLKR- 166 (394)
Q Consensus 91 ~~l~~~~~~~~~~~lp~~~~l~~~i~a~t~~~~~~a~~-~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~id~~~~- 166 (394)
-+...+++.|+++||.+.|++.+++.++|+.+++.|++ +.|.++. .+..| ++.+ .++.+|+.+|+.++
T Consensus 138 Geft~raf~nGk~Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~---~~~~~-----r~~l~~~~~~ie~~idf~eei 209 (482)
T 1xzp_A 138 GEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRD---FVDSL-----RRELIEVLAEIRVELDYPDEI 209 (482)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHH---HHHHH-----HHHHHHHHHHHHHHHHSTTTC
T ss_pred CCcCCcCCCcCCcCHHHHHHHHHHHhhccHHHHHHHHHhcchhHhH---HHHHH-----HHHHHHHHHHhhhcCCCCccc
Confidence 34455577889999999999999999999999999998 9996544 46677 7666 56777777764321
Q ss_pred -----HHHHhcCCceeeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEe
Q 016165 167 -----LYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMS 241 (394)
Q Consensus 167 -----~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~ 241 (394)
.+...+..+... ........-++..++.+..|+|+|.+|||||||+|.|++... ++++..|+||++.+.
T Consensus 210 ~~~~~~i~~~~~~l~~e--L~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~--a~vs~~~gTT~d~~~-- 283 (482)
T 1xzp_A 210 ETNTGEVVTRLERIKEK--LTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR--AIVTDIPGTTRDVIS-- 283 (482)
T ss_dssp CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTB--CCCCCSSCCSSCSCC--
T ss_pred cchHHHHHHHHHHHHHH--HHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHHHCCCC--CccCCCCCeeeeeEE--
Confidence 011111111000 000000000000112234899999999999999999999976 778888888875321
Q ss_pred cCcccccCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCC-ch----hhhhhhcccChHHHHHH
Q 016165 242 GVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVL-SG----EKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~l-sG----e~qrv~~~~~~~~iara 316 (394)
..+.+.|. .+.++||||+. .. ++..+. .+..
T Consensus 284 ---------------~~i~~~g~----------------------~~~l~DTaG~~~~~~~~ve~~gi~-------~~~~ 319 (482)
T 1xzp_A 284 ---------------EEIVIRGI----------------------LFRIVDTAGVRSETNDLVERLGIE-------RTLQ 319 (482)
T ss_dssp ---------------EEEEETTE----------------------EEEEEESSCCCSSCCTTCCCCCHH-------HHHH
T ss_pred ---------------EEEecCCe----------------------EEEEEECCCccccchhhHHHHHHH-------HHHH
Confidence 00111222 67899999997 42 222333 4556
Q ss_pred HhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 317 FAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 317 l~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.+.++|++|+++|++... ..+..++++.+ .++|+++|.||+|+.+
T Consensus 320 ~~~~aD~vl~VvD~s~~~-s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPL-DEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHHCSEEEEEEETTSCC-CHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred HhhcccEEEEEecCCCCC-CHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 789999999999997632 33445566555 3689999999999854
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.69 E-value=5.1e-18 Score=189.69 Aligned_cols=193 Identities=19% Similarity=0.226 Sum_probs=137.2
Q ss_pred cCCceeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc
Q 016165 172 LKPLEVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~ 248 (394)
++.-+++|.|++. ...+|+|+||++++ .++|+|++|||||||+++|+|.+ .|..|+ +.++|.+...+
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~--------~~~~G~--I~idG~~i~~~ 485 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY--------DVLKGK--ITIDGVDVRDI 485 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS--------CCSEEE--EEETTEETTTS
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc--------ccccCc--ccCCCccchhc
Confidence 3445678888642 24699999999988 99999999999999999999999 555555 45566555444
Q ss_pred C------CceeeeccCCCCCcccccccccchhh-hhhcCCccccccce---------------eecCCCCCc-hhhhhhh
Q 016165 249 P------GNTVAVQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHIT---------------LVDTPGVLS-GEKQRTQ 305 (394)
Q Consensus 249 ~------~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~---------------l~Dt~g~ls-Ge~qrv~ 305 (394)
+ ..+++.|+.+.|++ +..+|+.+.+. ...+.+.++++..+ +-+.-..+| ||+||++
T Consensus 486 ~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRia 564 (1321)
T 4f4c_A 486 NLEFLRKNVAVVSQEPALFNC-TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIA 564 (1321)
T ss_dssp CHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHH
T ss_pred cHHHHhhcccccCCcceeeCC-chhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHH
Confidence 3 45678888888876 45555532211 11111111111111 222334567 8999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+||+++++|+++|+ .+|+.. ...+.+.++.+.+ ++++|+|+ |....+..+|+++++++|
T Consensus 565 -------iARAl~~~~~IliLDE~tSaLD~~t---e~~i~~~l~~~~~-~~T~iiia-----Hrls~i~~aD~Iivl~~G 628 (1321)
T 4f4c_A 565 -------IARALVRNPKILLLDEATSALDAES---EGIVQQALDKAAK-GRTTIIIA-----HRLSTIRNADLIISCKNG 628 (1321)
T ss_dssp -------HHHHHTTCCSEEEEESTTTTSCTTT---HHHHHHHHHHHHT-TSEEEEEC-----SCTTTTTTCSEEEEEETT
T ss_pred -------HHHHHccCCCEEEEecccccCCHHH---HHHHHHHHHHHhC-CCEEEEEc-----ccHHHHHhCCEEEEeeCC
Confidence 99999999999999 888876 6777777777654 78899998 555566667999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
++++.|...++
T Consensus 629 ~ive~Gth~eL 639 (1321)
T 4f4c_A 629 QVVEVGDHRAL 639 (1321)
T ss_dssp EEEEEECHHHH
T ss_pred eeeccCCHHHH
Confidence 99988876554
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.69 E-value=1e-17 Score=173.10 Aligned_cols=181 Identities=19% Similarity=0.174 Sum_probs=120.9
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceee
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVA 254 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~ 254 (394)
+++.|++ ..++.+++++.. +++|+||||||||||+++|+|...| .++.... ...+.+..|
T Consensus 363 l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~-~~~i~~v~Q----------- 424 (607)
T 3bk7_A 363 LVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKVEW-DLTVAYKPQ----------- 424 (607)
T ss_dssp EEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC---SBSCCCC-CCCEEEECS-----------
T ss_pred eEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEE-eeEEEEEec-----------
Confidence 3445554 246666665555 9999999999999999999999853 1111100 111333333
Q ss_pred eccCCCCCcccccccccch---hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 255 VQADMPFSGLTTFGTAFLS---KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
........+...+.... .....+.+.++++.+++.+ .++.+| ||+||+. +|++++.+|+++|+
T Consensus 425 --~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~-------iAraL~~~p~lLlL 495 (607)
T 3bk7_A 425 --YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA-------IAATLLRDADIYLL 495 (607)
T ss_dssp --SCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHH-------HHHHHTSCCSEEEE
T ss_pred --CccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEE
Confidence 22111222222222111 1112234566777777754 578899 9999999 99999999999999
Q ss_pred -----EeCCCCCCchHHHHHHHHHHh-cCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc--ceeeecCccceee
Q 016165 327 -----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL--GKVLNTPEVVRVY 392 (394)
Q Consensus 327 -----~lD~~~~~~~~~~~~~l~~l~-~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~--G~i~~~~~~~~v~ 392 (394)
.+|+.. +..+.++|+.+. +.+.++|+|+ |+.+.+..+ |++++++. |++...+.+.+++
T Consensus 496 DEPt~~LD~~~---~~~l~~~l~~l~~~~g~tvi~vs-----Hd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 496 DEPSAYLDVEQ---RLAVSRAIRHLMEKNEKTALVVE-----HDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp ECTTTTCCHHH---HHHHHHHHHHHHHHTTCEEEEEC-----SCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred eCCccCCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 788776 788889999886 4578888888 888888887 99999985 6666666665553
No 60
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.68 E-value=1.3e-17 Score=170.41 Aligned_cols=181 Identities=20% Similarity=0.177 Sum_probs=120.9
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceee
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVA 254 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~ 254 (394)
+++.|++ ..++.++|++.. +++|+|+||||||||+++|+|...| .++.... ...+.+..++
T Consensus 293 l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~-~~~i~~v~Q~---------- 355 (538)
T 1yqt_A 293 LVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKIEW-DLTVAYKPQY---------- 355 (538)
T ss_dssp EEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC---SBCCCCC-CCCEEEECSS----------
T ss_pred EEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEE-CceEEEEecC----------
Confidence 3445554 245666665555 9999999999999999999999853 1111100 1113333332
Q ss_pred eccCCCCCcccccccccch---hhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 255 VQADMPFSGLTTFGTAFLS---KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
.......+........ .....+.+.++++.+++.+ .++.+| ||+||+. +|++++.+|+++|+
T Consensus 356 ---~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~-------lAraL~~~p~lLlL 425 (538)
T 1yqt_A 356 ---IKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVA-------IAATLLRDADIYLL 425 (538)
T ss_dssp ---CCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHH-------HHHHHTSCCSEEEE
T ss_pred ---CcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEE
Confidence 2111122222221111 1112234566777887754 678899 9999999 99999999999999
Q ss_pred -----EeCCCCCCchHHHHHHHHHHh-cCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc--ceeeecCccceee
Q 016165 327 -----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL--GKVLNTPEVVRVY 392 (394)
Q Consensus 327 -----~lD~~~~~~~~~~~~~l~~l~-~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~--G~i~~~~~~~~v~ 392 (394)
.+|+.. ...+.++|+++. +.+.++|+|+ |+.+++..+ |++++++. |+++..+.+.+++
T Consensus 426 DEPt~~LD~~~---~~~i~~~l~~l~~~~g~tvi~vs-----Hd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 426 DEPSAYLDVEQ---RLAVSRAIRHLMEKNEKTALVVE-----HDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp ECTTTTCCHHH---HHHHHHHHHHHHHHHTCEEEEEC-----SCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred eCCcccCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 788876 788889999886 3578888888 888888887 99999985 6666666665543
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.8e-18 Score=173.29 Aligned_cols=183 Identities=17% Similarity=0.180 Sum_probs=122.3
Q ss_pred eeeecCCcCcccccCCCCccc-------EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCC
Q 016165 178 TYRFNDFVSPLLTNSDFDAKP-------MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPG 250 (394)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~-------~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~ 250 (394)
.+.|.+. ..++++++|++.. +++|+|+||||||||+++|+|...| .++.... +..+.+..++...
T Consensus 353 ~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p---~~G~~~~-~~~i~~~~q~~~~--- 424 (608)
T 3j16_B 353 AFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP---DEGQDIP-KLNVSMKPQKIAP--- 424 (608)
T ss_dssp CCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC---SBCCCCC-SCCEEEECSSCCC---
T ss_pred eEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC---CCCcCcc-CCcEEEecccccc---
Confidence 4455432 2467778776654 5999999999999999999999953 1111111 1112233322111
Q ss_pred ceeeeccCCCCCccccccccc---chhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCC
Q 016165 251 NTVAVQADMPFSGLTTFGTAF---LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (394)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~d 322 (394)
....+...+.. .........+.++++.+++.+ .++.+| ||+||+. +||+++.+|+
T Consensus 425 ----------~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~-------iAraL~~~p~ 487 (608)
T 3j16_B 425 ----------KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVA-------IVLALGIPAD 487 (608)
T ss_dssp ----------CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHH-------HHHHTTSCCS
T ss_pred ----------cCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHHHHhCCC
Confidence 10111111110 000011122345666666654 688999 9999999 9999999999
Q ss_pred EEEE-----EeCCCCCCchHHHHHHHHHHh-cCCCeEEEEEecCCccCHHHHHHH-HhHhhhcc--ceeeecCccceeec
Q 016165 323 LILL-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNKADQVDTQQLMRV-YGALMWSL--GKVLNTPEVVRVYI 393 (394)
Q Consensus 323 llLl-----~lD~~~~~~~~~~~~~l~~l~-~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~--G~i~~~~~~~~v~~ 393 (394)
++|+ ++|+.. ...+.++|+++. +.+.++++|+ |+.+++..+ |++++++. |+++..+.+.++++
T Consensus 488 lLlLDEPT~gLD~~~---~~~i~~ll~~l~~~~g~tviivt-----Hdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 488 IYLIDEPSAYLDSEQ---RIICSKVIRRFILHNKKTAFIVE-----HDFIMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp EEEECCTTTTCCHHH---HHHHHHHHHHHHHHHTCEEEEEC-----SCHHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred EEEEECCCCCCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999 788765 778889998885 4588888888 899999887 99999986 88888888877654
No 62
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.68 E-value=6.6e-18 Score=188.32 Aligned_cols=193 Identities=17% Similarity=0.217 Sum_probs=132.7
Q ss_pred cCCceeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc
Q 016165 172 LKPLEVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI 248 (394)
Q Consensus 172 ~~~l~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~ 248 (394)
++.-++++.|++. ...+|+|++|++++ +++|+|+||||||||+++|+|.. .|..|+ +.+++.+...+
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~--------~~~~G~--i~i~g~~i~~~ 457 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY--------DPLDGM--VSIDGQDIRTI 457 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS--------CCSEEE--EEETTEEGGGS
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCeE--EEECCEEHHhC
Confidence 3444667788642 13699999999988 99999999999999999999999 444444 44455544333
Q ss_pred C------CceeeeccCCCCCcccccccccchhh-----hhhc-----CCccccccc--e----eecCCCCCc-hhhhhhh
Q 016165 249 P------GNTVAVQADMPFSGLTTFGTAFLSKF-----ECSQ-----MPHSLLEHI--T----LVDTPGVLS-GEKQRTQ 305 (394)
Q Consensus 249 ~------~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~-----~~~~~l~~~--~----l~Dt~g~ls-Ge~qrv~ 305 (394)
+ ...++.|+...+.+ +..+|..+... +..+ ...+.++.+ + +.+....+| ||+||++
T Consensus 458 ~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qria 536 (1284)
T 3g5u_A 458 NVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA 536 (1284)
T ss_dssp CHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHH
T ss_pred CHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHH
Confidence 2 35567777777766 55555532210 1110 111111111 1 122345688 9999999
Q ss_pred cccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccc
Q 016165 306 RAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLG 380 (394)
Q Consensus 306 ~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G 380 (394)
+||+++.+|+++|+ .+|+.. ...+.+.++.+. +++++|+|+ |+...+..+|+++++++|
T Consensus 537 -------iARal~~~p~iliLDEpts~LD~~~---~~~i~~~l~~~~-~~~t~i~it-----H~l~~i~~~d~i~vl~~G 600 (1284)
T 3g5u_A 537 -------IARALVRNPKILLLDEATSALDTES---EAVVQAALDKAR-EGRTTIVIA-----HRLSTVRNADVIAGFDGG 600 (1284)
T ss_dssp -------HHHHHHHCCSEEEEESTTCSSCHHH---HHHHHHHHHHHH-TTSEEEEEC-----SCHHHHTTCSEEEECSSS
T ss_pred -------HHHHHhcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHc-CCCEEEEEe-----cCHHHHHcCCEEEEEECC
Confidence 99999999999999 677654 556666776654 478888888 778777767999999999
Q ss_pred eeeecCcccee
Q 016165 381 KVLNTPEVVRV 391 (394)
Q Consensus 381 ~i~~~~~~~~v 391 (394)
++++.|...++
T Consensus 601 ~i~~~g~~~~l 611 (1284)
T 3g5u_A 601 VIVEQGNHDEL 611 (1284)
T ss_dssp CCCCEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99987765543
No 63
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.67 E-value=1.8e-17 Score=169.28 Aligned_cols=184 Identities=18% Similarity=0.135 Sum_probs=115.9
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCc-ccceeEEEEecCcccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP-TTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p-~t~r~~i~~~~~~~~~----- 247 (394)
++++.|++. ..++++++ .+.+ +++|+|+||||||||+|+|+|...| ..+... ........+.+.....
T Consensus 26 ~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~~~~~g~~~~~~~~~~ 101 (538)
T 1yqt_A 26 DCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVIRAFRGNELQNYFEKL 101 (538)
T ss_dssp CEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHHHHTTTSTHHHHHHHH
T ss_pred CcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhHHhhCCccHHHHHHHH
Confidence 566788762 14789998 6555 9999999999999999999999853 111100 0000000000110000
Q ss_pred ---cCCceeeeccCCCCCcc---cccccccchhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 248 ---IPGNTVAVQADMPFSGL---TTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
..+..+..+....+... +...+ +......+.+.++++.+++.+ .++.+| ||+||++ ||++
T Consensus 102 ~~~~~~~~~~~q~~~~~~~~~~~~v~e~--~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~-------iAra 172 (538)
T 1yqt_A 102 KNGEIRPVVKPQYVDLIPKAVKGKVIEL--LKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVA-------IAAA 172 (538)
T ss_dssp HTTSCCCEEECSCGGGSGGGCCSBHHHH--HHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHH-------HHHH
T ss_pred HHHhhhhhhhhhhhhhcchhhhccHHHH--HhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHH-------HHHH
Confidence 00111111111000000 00000 111122345667788888754 577889 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
++.+|+++|+ .||+.. ...+.++|+.+++.+.++|+|+ |+.+.+..+ +++++++.+
T Consensus 173 L~~~P~lLlLDEPTs~LD~~~---~~~l~~~L~~l~~~g~tvi~vs-----Hd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 173 LLRNATFYFFDEPSSYLDIRQ---RLNAARAIRRLSEEGKSVLVVE-----HDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEEC-----SCHHHHHHHCSEEEEEEEE
T ss_pred HhcCCCEEEEECCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEe-----CCHHHHHHhCCEEEEEcCc
Confidence 9999999999 777765 7788899999877788888888 888888877 888888754
No 64
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.65 E-value=1.6e-17 Score=185.21 Aligned_cols=189 Identities=17% Similarity=0.257 Sum_probs=129.5
Q ss_pred eeeeeecCC-cCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc----
Q 016165 176 EVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI---- 248 (394)
Q Consensus 176 ~~~~~~~~~-~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~---- 248 (394)
++++.|++. ...++++++|++++ +++|+|+||||||||+++|+|.. .|..|+ +.+++.+....
T Consensus 1035 ~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~--------~p~~G~--I~i~g~~i~~~~~~~ 1104 (1284)
T 3g5u_A 1035 GVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY--------DPMAGS--VFLDGKEIKQLNVQW 1104 (1284)
T ss_dssp EEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS--------CCSEEE--EESSSSCTTSSCHHH
T ss_pred EEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--------CCCCCE--EEECCEEcccCCHHH
Confidence 566777642 13589999999987 99999999999999999999999 444444 44455544332
Q ss_pred --CCceeeeccCCCCCcccccccccchh-------hhh-----hcCCccccccc------eeecCCCCCc-hhhhhhhcc
Q 016165 249 --PGNTVAVQADMPFSGLTTFGTAFLSK-------FEC-----SQMPHSLLEHI------TLVDTPGVLS-GEKQRTQRA 307 (394)
Q Consensus 249 --~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~-----~~~~~~~l~~~------~l~Dt~g~ls-Ge~qrv~~~ 307 (394)
....+++|+...+.+ +..+|..+.. .+. .....+.++.+ .+.+....+| ||+||+.
T Consensus 1105 ~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~-- 1181 (1284)
T 3g5u_A 1105 LRAQLGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA-- 1181 (1284)
T ss_dssp HTTSCEEEESSCCCCSS-BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH--
T ss_pred HHhceEEECCCCccccc-cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH--
Confidence 346667777766654 4444432110 010 01111112111 1122345788 9999999
Q ss_pred cChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 308 ~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
+||+++++|+++|+ .+|+.. ...+.+.++.+. +++++|+|+ |+.+.+..+|+++++++|++
T Consensus 1182 -----iARal~~~p~iLiLDEpTs~lD~~~---~~~i~~~l~~~~-~~~tvi~is-----H~l~~i~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1182 -----IARALVRQPHILLLDEATSALDTES---EKVVQEALDKAR-EGRTCIVIA-----HRLSTIQNADLIVVIQNGKV 1247 (1284)
T ss_dssp -----HHHHHHHCCSSEEEESCSSSCCHHH---HHHHHHHHHHHS-SSSCEEEEC-----SCTTGGGSCSEEEEEETBEE
T ss_pred -----HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHhC-CCCEEEEEe-----cCHHHHHcCCEEEEEECCEE
Confidence 99999999999999 777765 677778887754 478899998 55555555699999999999
Q ss_pred eecCcccee
Q 016165 383 LNTPEVVRV 391 (394)
Q Consensus 383 ~~~~~~~~v 391 (394)
++.|+..++
T Consensus 1248 ~~~g~~~~l 1256 (1284)
T 3g5u_A 1248 KEHGTHQQL 1256 (1284)
T ss_dssp EEEECHHHH
T ss_pred EEECCHHHH
Confidence 988876654
No 65
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.65 E-value=6.3e-17 Score=164.98 Aligned_cols=171 Identities=18% Similarity=0.141 Sum_probs=110.8
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~ 253 (394)
++++.|++. .+...++++.. +++|+|+||||||||+++|+|...| ..+... +.+. ...+
T Consensus 274 ~l~~~~~~~---~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--------~~G~i~--~~~~------~i~~ 334 (538)
T 3ozx_A 274 KIIKKLGDF---QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--------DEGSVT--PEKQ------ILSY 334 (538)
T ss_dssp CEEEEETTE---EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--------SBCCEE--SSCC------CEEE
T ss_pred ceEEEECCE---EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--------CCcEEE--ECCe------eeEe
Confidence 334456542 34545555544 9999999999999999999999942 222211 0000 1111
Q ss_pred eeccCCCCCcccccccccch--hh--hhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEE
Q 016165 254 AVQADMPFSGLTTFGTAFLS--KF--ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (394)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~--~~--~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dll 324 (394)
..+........+...+.... .. .....+.++++.+++.+ .++.+| ||+||+. |||+++.+|+++
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~-------iAraL~~~p~lL 407 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLY-------IAATLAKEADLY 407 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHH-------HHHHHHSCCSEE
T ss_pred echhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEE
Confidence 11211111111222211100 00 11122355667777654 688899 9999999 999999999999
Q ss_pred EE-----EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 325 LL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 325 Ll-----~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
|+ .+|+.. ..++.++|+++.+ .+.++++|+ |+.+++..+ |++++++.+
T Consensus 408 lLDEPT~gLD~~~---~~~i~~~l~~l~~~~g~tvi~vs-----Hdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 408 VLDQPSSYLDVEE---RYIVAKAIKRVTRERKAVTFIID-----HDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp EEESTTTTCCHHH---HHHHHHHHHHHHHHTTCEEEEEC-----SCHHHHHHHCSEEEEEEEE
T ss_pred EEeCCccCCCHHH---HHHHHHHHHHHHHhCCCEEEEEe-----CCHHHHHHhCCEEEEEeCC
Confidence 99 788766 7888899998865 578888888 889898887 999999863
No 66
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.65 E-value=4e-17 Score=168.57 Aligned_cols=184 Identities=19% Similarity=0.142 Sum_probs=115.3
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCc-ccceeEEEEecCcccc-----
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP-TTDRFVVVMSGVDDRS----- 247 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p-~t~r~~i~~~~~~~~~----- 247 (394)
++++.|++. ..++++++ .+.+ +++|+|+||||||||+|+|+|...| ..+... ........+.+.....
T Consensus 96 ~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 96 DCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp SEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhheeCCEehhhhhhhh
Confidence 567788762 14899998 6555 9999999999999999999999853 111100 0000000000110000
Q ss_pred ---cCCceeeeccCCCCCcc---cccccccchhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHH
Q 016165 248 ---IPGNTVAVQADMPFSGL---TTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 248 ---~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
.....+.++....+... +...+. ......+.+.++++.+++.+ .++.+| ||+||++ ||++
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l--~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRva-------IAra 242 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELL--KKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVA-------IAAA 242 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHH--HHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHH-------HHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHh--hhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHH-------HHHH
Confidence 00111111110000000 111110 11112345567777887754 678899 9999999 9999
Q ss_pred HhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccc
Q 016165 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLG 380 (394)
Q Consensus 317 l~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G 380 (394)
++.+|+++|+ .||+.. ...+.++|+.+.+.+.++|+|+ |+.+.+..+ |++++++.+
T Consensus 243 L~~~P~lLlLDEPTs~LD~~~---~~~l~~~L~~l~~~g~tvIivs-----Hdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 243 LLRKAHFYFFDEPSSYLDIRQ---RLKVARVIRRLANEGKAVLVVE-----HDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHSCCSEEEEECTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEEC-----SCHHHHHHHCSEEEEEESC
T ss_pred HhcCCCEEEEECCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEe-----cChHHHHhhCCEEEEECCC
Confidence 9999999999 788766 7788899999877788888888 888888777 888888754
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.62 E-value=9.2e-17 Score=171.99 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=119.2
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCce
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNT 252 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~ 252 (394)
.++++.|++ +.++++++|++.. +++|+|+||||||||+++|+|-... +.+...+..+.+..++..
T Consensus 439 ~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~-----g~~~~~~~~~~~v~q~~~------ 505 (986)
T 2iw3_A 439 CEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD-----GFPTQEECRTVYVEHDID------ 505 (986)
T ss_dssp EEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST-----TCCCTTTSCEEETTCCCC------
T ss_pred eeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-----CCccccceeEEEEccccc------
Confidence 467788877 5699999999877 9999999999999999999964311 111111111222222110
Q ss_pred eeeccCCCCCcccccccccchhhhhhcCCccccccceee-c----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~-D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
..+..++..++.........+.+.++++.+++. + .++.+| ||+||+. +||+++.+|+++|+
T Consensus 506 ------~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRva-------LArAL~~~P~lLLL 572 (986)
T 2iw3_A 506 ------GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLA-------LARAVLRNADILLL 572 (986)
T ss_dssp ------CCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHH-------HHHHHHTTCSEEEE
T ss_pred ------ccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 011122222221110000023355667777773 2 678999 9999999 99999999999999
Q ss_pred -----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH-HhHhhhccceee-ecCccc
Q 016165 327 -----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL-NTPEVV 389 (394)
Q Consensus 327 -----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~-~~~~~~ 389 (394)
.+|+.. ...+.++|+. .+.++|+++ |+.+.+..+ ++++++++|+++ ..|...
T Consensus 573 DEPTs~LD~~~---~~~l~~~L~~---~g~tvIivS-----Hdl~~l~~~adrii~L~~G~iv~~~G~~~ 631 (986)
T 2iw3_A 573 DEPTNHLDTVN---VAWLVNYLNT---CGITSITIS-----HDSVFLDNVCEYIINYEGLKLRKYKGNFT 631 (986)
T ss_dssp ESTTTTCCHHH---HHHHHHHHHH---SCSEEEEEC-----SCHHHHHHHCSEEEEEETTEEEEEESCHH
T ss_pred ECCccCCCHHH---HHHHHHHHHh---CCCEEEEEE-----CCHHHHHHhCCEEEEEECCeeecCCCCHH
Confidence 777765 6667777766 477888887 888888887 999999999986 445443
No 68
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.61 E-value=2.8e-16 Score=164.94 Aligned_cols=92 Identities=22% Similarity=0.297 Sum_probs=75.1
Q ss_pred cccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhcCC--EEEE-----EeCCCCCCchHHHHHHHHHHhcCCC
Q 016165 285 LEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD--LILL-----LFDPHKLDISDEFKRVITSLRGHDD 351 (394)
Q Consensus 285 l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~d--llLl-----~lD~~~~~~~~~~~~~l~~l~~~~~ 351 (394)
++.+++.+ .++.+| ||+||++ |||+++.+|+ ++|+ .+|+.. ...+.++++.+++.+.
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~-------iArAL~~~p~~~lLlLDEPtsgLD~~~---~~~l~~~l~~l~~~g~ 255 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIR-------LATQIGSRLTGVLYVLDEPSIGLHQRD---NDRLIATLKSMRDLGN 255 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHH-------HHHHHHTCCCSCEEEEECTTTTCCGGG---HHHHHHHHHHHHHTTC
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHH-------HHHHHhhCCCCCEEEEECCccCCCHHH---HHHHHHHHHHHHHcCC
Confidence 44555532 578899 9999999 9999999988 9999 888876 8889999999988888
Q ss_pred eEEEEEecCCccCHHHHHHHHhHhhh------ccceeeecCcccee
Q 016165 352 KIRVVLNKADQVDTQQLMRVYGALMW------SLGKVLNTPEVVRV 391 (394)
Q Consensus 352 ~viiv~nK~Dl~~~~~~~~~~~~~~~------~~G~i~~~~~~~~v 391 (394)
++|+|+ |+.+.+..+|+++++ +.|+++..+.+.++
T Consensus 256 tvi~vt-----Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 256 TLIVVE-----HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp EEEEEC-----CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred EEEEEe-----CCHHHHhhCCEEEEecccccccCCEEEEecCHHHH
Confidence 999888 777765545898888 88999887766544
No 69
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.57 E-value=1.5e-16 Score=167.11 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCCCCc-hhhhhhhcccChHHHHHHHhhcCC---EEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCcc
Q 016165 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD---LILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (394)
Q Consensus 293 t~g~ls-Ge~qrv~~~~~~~~iaral~~~~d---llLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~ 363 (394)
.++.+| ||+||+. |||+++.+|+ ++|+ ++|+.. ...+.++++.+++.+.++|+|+ |
T Consensus 540 ~~~~LSgG~~qrv~-------iAraL~~~p~~p~llllDEPt~~LD~~~---~~~i~~~l~~l~~~g~tvi~vt-----H 604 (670)
T 3ux8_A 540 PATTLSGGEAQRVK-------LAAELHRRSNGRTLYILDEPTTGLHVDD---IARLLDVLHRLVDNGDTVLVIE-----H 604 (670)
T ss_dssp CGGGCCHHHHHHHH-------HHHHHHSCCCSCEEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEEC-----C
T ss_pred CchhCCHHHHHHHH-------HHHHHhhCCCCCcEEEEeCCCCCCCHHH---HHHHHHHHHHHHHCCCEEEEEe-----C
Confidence 678899 9999999 9999998875 8888 777765 7888999999987888999988 7
Q ss_pred CHHHHHHHHhHhhh------ccceeeecCcccee
Q 016165 364 DTQQLMRVYGALMW------SLGKVLNTPEVVRV 391 (394)
Q Consensus 364 ~~~~~~~~~~~~~~------~~G~i~~~~~~~~v 391 (394)
+.+.+..+|+++++ ++|+++..|.+.++
T Consensus 605 d~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 605 NLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638 (670)
T ss_dssp CHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHH
T ss_pred CHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHH
Confidence 77766545999999 89999988876654
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.56 E-value=3.7e-16 Score=167.30 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=66.4
Q ss_pred Cccccccceee-----c-CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc
Q 016165 281 PHSLLEHITLV-----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG 348 (394)
Q Consensus 281 ~~~~l~~~~l~-----D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~ 348 (394)
+.++++.+++. + .++.+| ||+||+. +||+++.+|+++|+ .+|... ...+ ++.+++
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVa-------LArAL~~~P~LLLLDEPT~gLD~~s---~~~L---~~~L~~ 946 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLV-------LAAGTWQRPHLIVLDEPTNYLDRDS---LGAL---SKALKE 946 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHH-------HHHHHTTCCSEEEEECGGGTCCHHH---HHHH---HHHHHS
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHH-------HHHHHHhCCCEEEEECCccCCCHHH---HHHH---HHHHHH
Confidence 44566777763 2 578899 9999999 99999999999999 777643 4444 444445
Q ss_pred CCCeEEEEEecCCccCHHHHHHH-HhHhhhccceeeecCc
Q 016165 349 HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPE 387 (394)
Q Consensus 349 ~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~~~~~ 387 (394)
.+.++|+++ |+.+.+..+ ++++.+++|+++..|.
T Consensus 947 ~g~tVIiIS-----HD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 947 FEGGVIIIT-----HSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CSSEEEEEC-----SCHHHHTTTCCEEECCBTTBCCC---
T ss_pred hCCEEEEEE-----CCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 466778777 888888776 8999999999987653
No 71
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.55 E-value=8.1e-16 Score=156.79 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=71.1
Q ss_pred hcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHh
Q 016165 278 SQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLR 347 (394)
Q Consensus 278 ~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~ 347 (394)
.+.+.++++.+++.+ .++.+| ||+||++ ||++++.+|+++|+ .||+.. ...+.++|+.++
T Consensus 116 ~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~-------iA~aL~~~p~illlDEPts~LD~~~---~~~l~~~l~~l~ 185 (538)
T 3ozx_A 116 RGKKDEVKELLNMTNLWNKDANILSGGGLQRLL-------VAASLLREADVYIFDQPSSYLDVRE---RMNMAKAIRELL 185 (538)
T ss_dssp SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH-------HHHHHHSCCSEEEEESTTTTCCHHH---HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEECCcccCCHHH---HHHHHHHHHHHh
Confidence 345566777777654 578899 9999999 99999999999999 777765 777889999987
Q ss_pred cCCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 348 GHDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 348 ~~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
+ +.++|+|+ |+.+++..+ |++.+++.|.
T Consensus 186 ~-g~tii~vs-----Hdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 186 K-NKYVIVVD-----HDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp T-TSEEEEEC-----SCHHHHHHHCSEEEEEEEET
T ss_pred C-CCEEEEEE-----eChHHHHhhCCEEEEecCCc
Confidence 6 88888888 888888877 8888887653
No 72
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.7e-16 Score=158.81 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=72.9
Q ss_pred cCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhc
Q 016165 279 QMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG 348 (394)
Q Consensus 279 ~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~ 348 (394)
+.+.++++.+++.+ .++.+| ||+||++ ||++++.+|+++|+ .||+.. ...+.++++.+++
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~-------iAraL~~~p~llllDEPts~LD~~~---~~~l~~~l~~l~~ 269 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFA-------IGMSCVQEADVYMFDEPSSYLDVKQ---RLNAAQIIRSLLA 269 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHH-------HHHHHHSCCSEEEEECTTTTCCHHH---HHHHHHHHHGGGT
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHH-------HHHHHHhCCCEEEEECcccCCCHHH---HHHHHHHHHHHHh
Confidence 34566777777754 689999 9999999 99999999999999 777765 6778899999988
Q ss_pred CCCeEEEEEecCCccCHHHHHHH-HhHhhhccce
Q 016165 349 HDDKIRVVLNKADQVDTQQLMRV-YGALMWSLGK 381 (394)
Q Consensus 349 ~~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~ 381 (394)
.+.++|+|+ |+.+++..+ |++++++.|.
T Consensus 270 ~g~tvi~vt-----Hdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 270 PTKYVICVE-----HDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp TTCEEEEEC-----SCHHHHHHHCSEEEEEESCT
T ss_pred CCCEEEEEe-----CCHHHHHHhCCEEEEEeCCc
Confidence 888888888 888888887 8988887654
No 73
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.52 E-value=9e-14 Score=131.84 Aligned_cols=124 Identities=23% Similarity=0.253 Sum_probs=87.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|.+|||||||+|.|+|... ++++..|.|++..+... . . ..+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~--~ivs~~~~tTr~~i~~i------------~-~----~~~--------------- 54 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKV--APISPRPQTTRKRLRGI------------L-T----EGR--------------- 54 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEE------------E-E----ETT---------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCce--eeecCCCCceeEEEEEE------------E-E----eCC---------------
Confidence 799999999999999999999886 67788888877543200 0 0 001
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcC--CCeEEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--DDKIRVV 356 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~--~~~viiv 356 (394)
..+.++||||+.... ..+.+. |...+...+.++|++|+++|++. ........+++.+.+. +.|+++|
T Consensus 55 -------~~l~l~DTpG~~~~~-~~l~~~--~~~~~~~~l~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~~~p~ilV 123 (301)
T 1wf3_A 55 -------RQIVFVDTPGLHKPM-DALGEF--MDQEVYEALADVNAVVWVVDLRH-PPTPEDELVARALKPLVGKVPILLV 123 (301)
T ss_dssp -------EEEEEEECCCCCCCC-SHHHHH--HHHHHHHHTSSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTTTSCEEEE
T ss_pred -------cEEEEecCccccchh-hHHHHH--HHHHHHHHHhcCCEEEEEEECCC-CCChHHHHHHHHHHhhcCCCCEEEE
Confidence 177899999987521 111110 22366778899999999999976 2344445556667665 7899999
Q ss_pred EecCCccCHHH
Q 016165 357 LNKADQVDTQQ 367 (394)
Q Consensus 357 ~nK~Dl~~~~~ 367 (394)
.||+|+.+...
T Consensus 124 ~NK~Dl~~~~~ 134 (301)
T 1wf3_A 124 GNKLDAAKYPE 134 (301)
T ss_dssp EECGGGCSSHH
T ss_pred EECcccCCchH
Confidence 99999975544
No 74
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.51 E-value=2.7e-14 Score=122.77 Aligned_cols=114 Identities=23% Similarity=0.302 Sum_probs=75.0
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|++|||||||+|.|+|.. ..++..|+++..... ..+.+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~---~~~~~~~~~t~~~~~-----------------~~~~~~~-------------- 49 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN---VYIGNWPGVTVEKKE-----------------GEFEYNG-------------- 49 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS---SSCC-----CCCCCE-----------------EEEEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---eeccCCCCcceeeeE-----------------EEEEECC--------------
Confidence 379999999999999999999976 444444544332100 0000111
Q ss_pred hcCCccccccceeecCCCCCc--hhhhhhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~v 353 (394)
..+.++||||+.. +.... ..+++.++ .+++++++++|+.. ......++..+.+.+.|+
T Consensus 50 --------~~l~i~Dt~G~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~v~D~~~---~~~~~~~~~~~~~~~~p~ 111 (165)
T 2wji_A 50 --------EKFKVVDLPGVYSLTANSID-------EIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEMGANL 111 (165)
T ss_dssp --------EEEEEEECCCCSCSSSSSHH-------HHHHHHHHHHHCCSEEEEEEETTC---HHHHHHHHHHHHHTTCCE
T ss_pred --------cEEEEEECCCcccCCCcchh-------HHHHHHHHhcCCCCEEEEEecCCc---hhHhHHHHHHHHhcCCCE
Confidence 1678999999865 11100 11444555 38999999999987 555666777777678999
Q ss_pred EEEEecCCcc
Q 016165 354 RVVLNKADQV 363 (394)
Q Consensus 354 iiv~nK~Dl~ 363 (394)
++|.||+|+.
T Consensus 112 ilv~nK~Dl~ 121 (165)
T 2wji_A 112 LLALNKMDLA 121 (165)
T ss_dssp EEEEECHHHH
T ss_pred EEEEEchHhc
Confidence 9999999974
No 75
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.50 E-value=1.1e-13 Score=131.80 Aligned_cols=125 Identities=22% Similarity=0.379 Sum_probs=88.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccc-cccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFG-TAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 277 (394)
+|+|+|.+|||||||+|.|+|... .+++..|.+++..+... .... .
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~--~i~s~~~~tT~~~~~~~-----------------------~~~~~~-------- 58 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLGV-----------------------KNIPNE-------- 58 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEE-----------------------EEETTT--------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc--cccCCCCCceeeEEEEE-----------------------EecCCC--------
Confidence 899999999999999999999986 67888888887543211 0000 0
Q ss_pred hcCCccccccceeecCCCCCchhh-hhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHH-HHHHhcCCCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEK-QRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRV-ITSLRGHDDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~-qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~-l~~l~~~~~~vii 355 (394)
..+.++||||+..... ....+ .+...+...+.++|++|+++|+... .......+ ++.+...+.|+++
T Consensus 59 --------~~i~lvDTPG~~~~~~~~~l~~--~~~~~~~~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~~~~pvil 127 (308)
T 3iev_A 59 --------AQIIFLDTPGIYEPKKSDVLGH--SMVEIAKQSLEEADVILFMIDATEG-WRPRDEEIYQNFIKPLNKPVIV 127 (308)
T ss_dssp --------EEEEEEECCCCCCCCTTCHHHH--HHHHHHHHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGGGCCCEEE
T ss_pred --------CeEEEEECcCCCccccchhHHH--HHHHHHHHHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHhcCCCEEE
Confidence 1678999999965210 11111 1223667788999999999999862 23444444 7777777889999
Q ss_pred EEecCCcc-CHHH
Q 016165 356 VLNKADQV-DTQQ 367 (394)
Q Consensus 356 v~nK~Dl~-~~~~ 367 (394)
|+||+|+. +.+.
T Consensus 128 V~NK~Dl~~~~~~ 140 (308)
T 3iev_A 128 VINKIDKIGPAKN 140 (308)
T ss_dssp EEECGGGSSSGGG
T ss_pred EEECccCCCCHHH
Confidence 99999987 4433
No 76
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.47 E-value=5.5e-14 Score=130.28 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=84.7
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.|+++|.+|||||||+|.|+|.. ..++..|+++...... .+.+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~---~~v~~~pg~Tv~~~~~-----------------~~~~~~-------------- 47 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN---QRVGNWPGVTVEKKTG-----------------EFLLGE-------------- 47 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS---EEEEECTTSSSEEEEE-----------------EEEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCccCCCCceEEEEEE-----------------EEEECC--------------
Confidence 369999999999999999999987 5666666666543210 011111
Q ss_pred hcCCccccccceeecCCCCCc--hhhh--hhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCC
Q 016165 278 SQMPHSLLEHITLVDTPGVLS--GEKQ--RTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDD 351 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls--Ge~q--rv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~ 351 (394)
..+.++||||+.+ ...+ ... ..+++.++ .++|++|+++|++. ......+...+.+.+.
T Consensus 48 --------~~~~lvDtpG~~~~~~~~~~~~~~-----e~i~~~~~~~~~~d~vi~VvDas~---~~~~~~l~~~l~~~~~ 111 (256)
T 3iby_A 48 --------HLIEITDLPGVYSLVANAEGISQD-----EQIAAQSVIDLEYDCIINVIDACH---LERHLYLTSQLFELGK 111 (256)
T ss_dssp --------EEEEEEECCCCSSCC------CHH-----HHHHHHHHHHSCCSEEEEEEEGGG---HHHHHHHHHHHTTSCS
T ss_pred --------eEEEEEeCCCcccccccccCCCHH-----HHHHHHHHhhCCCCEEEEEeeCCC---chhHHHHHHHHHHcCC
Confidence 1678999999987 1100 111 12566666 89999999999987 6667778888888899
Q ss_pred eEEEEEecCCccC
Q 016165 352 KIRVVLNKADQVD 364 (394)
Q Consensus 352 ~viiv~nK~Dl~~ 364 (394)
|+++|.||+|+..
T Consensus 112 pvilv~NK~Dl~~ 124 (256)
T 3iby_A 112 PVVVALNMMDIAE 124 (256)
T ss_dssp CEEEEEECHHHHH
T ss_pred CEEEEEEChhcCC
Confidence 9999999999753
No 77
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.45 E-value=2.2e-13 Score=127.34 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=81.2
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|++|||||||+|.|+|.. ..++..|+++...... .+.. +
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~---~~v~~~pg~tv~~~~~-----------------~~~~-~-------------- 48 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN---QRVGNWPGVTVERKSG-----------------LVKK-N-------------- 48 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC---CCCCSSSCCCCSCEEE-----------------ECTT-C--------------
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCCcEEEEEE-----------------EEec-C--------------
Confidence 379999999999999999999987 5666667665432110 0111 1
Q ss_pred hcCCccccccceeecCCCCCc--hhhhhhhcccChHHHHHHHhh--cCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAA--KCDLILLLFDPHKLDISDEFKRVITSLRGHDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~~--~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~v 353 (394)
..+.++||||+.+ +....- .+++.++. ++|++++++|++. ......+..++.+.+.|+
T Consensus 49 --------~~l~l~DtpG~~~~~~~~~~e-------~v~~~~~~~~~~d~vi~V~D~t~---~e~~~~~~~~l~~~~~p~ 110 (272)
T 3b1v_A 49 --------KDLEIQDLPGIYSMSPYSPEA-------KVARDYLLSQRADSILNVVDATN---LERNLYLTTQLIETGIPV 110 (272)
T ss_dssp --------TTEEEEECCCCSCSSCSSHHH-------HHHHHHHHTTCCSEEEEEEEGGG---HHHHHHHHHHHHHTCSCE
T ss_pred --------CeEEEEECCCcCccCCCChHH-------HHHHHHHhcCCCCEEEEEecCCc---hHhHHHHHHHHHhcCCCE
Confidence 2778999999976 111111 14555665 6999999999987 555667777777778999
Q ss_pred EEEEecCCcc
Q 016165 354 RVVLNKADQV 363 (394)
Q Consensus 354 iiv~nK~Dl~ 363 (394)
++|.||+|+.
T Consensus 111 ilv~NK~Dl~ 120 (272)
T 3b1v_A 111 TIALNMIDVL 120 (272)
T ss_dssp EEEEECHHHH
T ss_pred EEEEEChhhC
Confidence 9999999974
No 78
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.44 E-value=1.3e-12 Score=117.46 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=86.2
Q ss_pred ccEEEEeecCCCchhHHHHHHHhcc-CCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhh
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTS-YPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~-~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 275 (394)
.++|+++|.+|||||||+|.|++.. . ..++..+++++........ ...+
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~--~~~~~~~~~t~~~~~~~~~----------------~~~~------------ 78 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRL--AFASKTPGRTQHINYFSVG----------------PAAE------------ 78 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSS--SCTTCCCCSCCCEEEEEES----------------CTTS------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcc--eeecCCCCcccceEEEEec----------------CCCC------------
Confidence 4589999999999999999999986 3 4566666666543211100 0011
Q ss_pred hhhcCCccccccceeecCCCCCch-----hhhhhhcccChHHHHHHHhhc---CCEEEEEeCCCCCCchHHHHHHHHHHh
Q 016165 276 ECSQMPHSLLEHITLVDTPGVLSG-----EKQRTQRAYDFTGVTSWFAAK---CDLILLLFDPHKLDISDEFKRVITSLR 347 (394)
Q Consensus 276 ~~~~~~~~~l~~~~l~Dt~g~lsG-----e~qrv~~~~~~~~iaral~~~---~dllLl~lD~~~~~~~~~~~~~l~~l~ 347 (394)
..+.++||||+... ++.+ |..+...++.. +|++|+++|+.. ........+++.+.
T Consensus 79 ----------~~~~l~DtpG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~ 141 (223)
T 4dhe_A 79 ----------PVAHLVDLPGYGYAEVPGAAKAH------WEQLLSSYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFA 141 (223)
T ss_dssp ----------CSEEEEECCCCCSSCCCSTHHHH------HHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHG
T ss_pred ----------CcEEEEcCCCCCcccCChhhHHH------HHHHHHHHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHH
Confidence 27789999997551 1111 11244455554 788999999976 34566677788887
Q ss_pred cCCCeEEEEEecCCccCHHHH
Q 016165 348 GHDDKIRVVLNKADQVDTQQL 368 (394)
Q Consensus 348 ~~~~~viiv~nK~Dl~~~~~~ 368 (394)
..+.|+++|.||+|+.+..+.
T Consensus 142 ~~~~p~i~v~nK~Dl~~~~~~ 162 (223)
T 4dhe_A 142 PTGKPIHSLLTKCDKLTRQES 162 (223)
T ss_dssp GGCCCEEEEEECGGGSCHHHH
T ss_pred hcCCCEEEEEeccccCChhhH
Confidence 778999999999999876554
No 79
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.43 E-value=4.2e-13 Score=116.30 Aligned_cols=119 Identities=23% Similarity=0.254 Sum_probs=75.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+|+|++|||||||+|.|++... ..++..|+++++... ..+.+.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~--~~~~~~~~~t~~~~~-----------------~~~~~~~-------------- 51 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLR-----------------EHIHIDG-------------- 51 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSTTCCCSCEE-----------------EEEEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--ceeeCCCCceeceee-----------------EEEEECC--------------
Confidence 3799999999999999999999874 456666666653221 0000111
Q ss_pred hcCCccccccceeecCCCCCc--hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCe
Q 016165 278 SQMPHSLLEHITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDK 352 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~ 352 (394)
..+.++||||+.. ....+.. ...+...+.++|++|+++|........ ...++..+. ..+.|
T Consensus 52 --------~~~~l~Dt~G~~~~~~~~~~~~-----~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p 117 (172)
T 2gj8_A 52 --------MPLHIIDTAGLREASDEVERIG-----IERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLP 117 (172)
T ss_dssp --------EEEEEEECCCCSCCSSHHHHHH-----HHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCC
T ss_pred --------eEEEEEECCCcccchhHHHHHH-----HHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCC
Confidence 1567999999865 1111111 001234579999999999997632221 233333332 23689
Q ss_pred EEEEEecCCcc
Q 016165 353 IRVVLNKADQV 363 (394)
Q Consensus 353 viiv~nK~Dl~ 363 (394)
+++|.||+|+.
T Consensus 118 ~ilv~NK~Dl~ 128 (172)
T 2gj8_A 118 ITVVRNKADIT 128 (172)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECccCC
Confidence 99999999974
No 80
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.43 E-value=6.4e-14 Score=149.82 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=77.4
Q ss_pred ccccccceee-----cCCCCCc-hhhhhhhcccChHHHHHHHhhcC---CEEEE-----EeCCCCCCchHHHHHHHHHHh
Q 016165 282 HSLLEHITLV-----DTPGVLS-GEKQRTQRAYDFTGVTSWFAAKC---DLILL-----LFDPHKLDISDEFKRVITSLR 347 (394)
Q Consensus 282 ~~~l~~~~l~-----Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~---dllLl-----~lD~~~~~~~~~~~~~l~~l~ 347 (394)
.++|+.+++. ..++.+| ||+||+. +||+++++| +++|+ +||+.. ...+.++|+.+.
T Consensus 786 ~~~L~~vGL~~~~lgq~~~~LSGGErQRV~-------LAraL~~~p~~p~LLILDEPTsGLD~~~---~~~L~~lL~~L~ 855 (916)
T 3pih_A 786 LQVLHDVGLGYVKLGQPATTLSGGEAQRIK-------LASELRKRDTGRTLYILDEPTVGLHFED---VRKLVEVLHRLV 855 (916)
T ss_dssp HHHHHHTTGGGSBTTCCSTTCCHHHHHHHH-------HHHHHTSCCCSSEEEEEESTTTTCCHHH---HHHHHHHHHHHH
T ss_pred HHHHHHcCCchhhccCCccCCCHHHHHHHH-------HHHHHhhCCCCCCEEEEECCCCCCCHHH---HHHHHHHHHHHH
Confidence 3455566653 2678899 9999999 999999876 68888 777765 778889999998
Q ss_pred cCCCeEEEEEecCCccCHHHHHHHHhHhhh------ccceeeecCccceee
Q 016165 348 GHDDKIRVVLNKADQVDTQQLMRVYGALMW------SLGKVLNTPEVVRVY 392 (394)
Q Consensus 348 ~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~------~~G~i~~~~~~~~v~ 392 (394)
++|.+||+|. |+.+.+...|+++.+ +.|+++..|.+.+++
T Consensus 856 ~~G~TVIvI~-----HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 856 DRGNTVIVIE-----HNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp HTTCEEEEEC-----CCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred hcCCEEEEEe-----CCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 8889999988 778777666999999 899999988877654
No 81
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.42 E-value=2.1e-13 Score=136.05 Aligned_cols=123 Identities=25% Similarity=0.362 Sum_probs=73.0
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
++|+|+|.+|+|||||+|.|+|... ++++..|++|++.... ...+.+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~--~~v~~~~g~T~d~~~~-----------------~~~~~~-------------- 48 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK--AIVEDEEGVTRDPVQD-----------------TVEWYG-------------- 48 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEE-----------------EEEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--ceecCCCCCccceeeE-----------------EEEECC--------------
Confidence 4799999999999999999999875 6778888887754210 000112
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~ 357 (394)
..+.++||||+.......+.. .+...+..++.++|++|+++|+.. +.......+.+.+++.++|+++|.
T Consensus 49 --------~~~~l~DT~G~~~~~~~~~~~--~~~~~~~~~~~~ad~il~V~D~~~-~~~~~d~~i~~~l~~~~~p~ilv~ 117 (439)
T 1mky_A 49 --------KTFKLVDTCGVFDNPQDIISQ--KMKEVTLNMIREADLVLFVVDGKR-GITKEDESLADFLRKSTVDTILVA 117 (439)
T ss_dssp --------EEEEEEECTTTTSSGGGCCCH--HHHHHHHHHHTTCSEEEEEEETTT-CCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred --------eEEEEEECCCccccccchHHH--HHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEE
Confidence 167899999986421111100 012256778899999999999875 333443444444555578999999
Q ss_pred ecCCccC
Q 016165 358 NKADQVD 364 (394)
Q Consensus 358 nK~Dl~~ 364 (394)
||+|+.+
T Consensus 118 NK~D~~~ 124 (439)
T 1mky_A 118 NKAENLR 124 (439)
T ss_dssp ESCCSHH
T ss_pred eCCCCcc
Confidence 9999853
No 82
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.42 E-value=1.8e-13 Score=128.04 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=82.8
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|.+|||||||+|.|+|.. ..++..|+++....... +.+.+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~---~~v~~~~g~t~~~~~~~-----------------~~~~~-------------- 49 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR---QRVGNWAGVTVERKEGQ-----------------FSTTD-------------- 49 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC---EEEEECTTSSSEEEEEE-----------------EECSS--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---cccCCCCCeeEEEEEEE-----------------EEeCC--------------
Confidence 379999999999999999999987 66666676665432110 11111
Q ss_pred hcCCccccccceeecCCCCCc-h-h--hhhhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCC
Q 016165 278 SQMPHSLLEHITLVDTPGVLS-G-E--KQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDD 351 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls-G-e--~qrv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~ 351 (394)
..+.++||||+.+ . . ..... ..+++.+. .++|++++++|++. ......++..+.+.+.
T Consensus 50 --------~~~~liDtpG~~~~~~~~~~~~~~-----e~i~~~~~~~~~~d~ii~VvD~~~---~~~~~~~~~~l~~~~~ 113 (274)
T 3i8s_A 50 --------HQVTLVDLPGTYSLTTISSQTSLD-----EQIACHYILSGDADLLINVVDASN---LERNLYLTLQLLELGI 113 (274)
T ss_dssp --------CEEEEEECCCCSCSCC----CCHH-----HHHHHHHHHHTCCSEEEEEEEGGG---HHHHHHHHHHHHHHTC
T ss_pred --------CceEEEECcCCCccccccccCCHH-----HHHHHHHHhhcCCCEEEEEecCCC---hHHHHHHHHHHHhcCC
Confidence 1678999999977 2 1 01111 11445554 79999999999987 5666777777777789
Q ss_pred eEEEEEecCCccC
Q 016165 352 KIRVVLNKADQVD 364 (394)
Q Consensus 352 ~viiv~nK~Dl~~ 364 (394)
|+++|.||+|+.+
T Consensus 114 p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 114 PCIVALNMLDIAE 126 (274)
T ss_dssp CEEEEEECHHHHH
T ss_pred CEEEEEECccchh
Confidence 9999999999753
No 83
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.41 E-value=4.2e-13 Score=134.54 Aligned_cols=120 Identities=18% Similarity=0.310 Sum_probs=75.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
++|+|+|++|||||||+|.|+|... +.+...|+++++..... ..+.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~--~~v~~~~g~t~~~~~~~-----------------~~~~~-------------- 70 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERI--SIVEDTPGVTRDRIYSS-----------------AEWLN-------------- 70 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEE--C-----------CEEEE-----------------CTTCS--------------
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCcceeEEEEE-----------------EEECC--------------
Confidence 4899999999999999999999886 66777777777543211 11112
Q ss_pred hcCCccccccceeecCCCCCch-h--hhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSG-E--KQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsG-e--~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vi 354 (394)
..+.++||||+... + .++ +...+..++.++|++|+++|... +......++.+.+++.++|++
T Consensus 71 --------~~~~liDT~G~~~~~~~~~~~------~~~~~~~~~~~ad~il~VvD~~~-~~~~~d~~l~~~l~~~~~pvi 135 (456)
T 4dcu_A 71 --------YDFNLIDTGGIDIGDEPFLAQ------IRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVV 135 (456)
T ss_dssp --------SCCEEECCCC------CCHHH------HHHHHHHHHHHCSEEEEEEESSS-CSCHHHHHHHHHHTTCCSCEE
T ss_pred --------ceEEEEECCCCCCcchHHHHH------HHHHHHhhHhhCCEEEEEEeCCC-CCChHHHHHHHHHHHcCCCEE
Confidence 27889999997641 1 111 12266778899999999999875 455666777788888899999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 136 lV~NK~D~~~~ 146 (456)
T 4dcu_A 136 LAVNKLDNTEM 146 (456)
T ss_dssp EEEECC-----
T ss_pred EEEECccchhh
Confidence 99999998643
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.41 E-value=2.7e-13 Score=120.24 Aligned_cols=128 Identities=23% Similarity=0.240 Sum_probs=78.1
Q ss_pred eecCCcCcccccCCCCccc-EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccC
Q 016165 180 RFNDFVSPLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQAD 258 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~-~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~ 258 (394)
.|++. ..+++++++..+. .|+++|++|||||||+|.+.+... ....+..+.+...+
T Consensus 8 ~~~~~-~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~--~~~~~t~~~~~~~~-------------------- 64 (198)
T 1f6b_A 8 IYSGF-SSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRL--GQHVPTLHPTSEEL-------------------- 64 (198)
T ss_dssp ------CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCSCEEE--------------------
T ss_pred HHHHH-HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCC--CccCCCCCceeEEE--------------------
Confidence 34443 3577888887776 899999999999999999988653 11111001111000
Q ss_pred CCCCcccccccccchhhhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHH
Q 016165 259 MPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDE 338 (394)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~ 338 (394)
.+.+ ..+.++||||... -+ .+.+.++.++|++++++|+........
T Consensus 65 -~~~~----------------------~~l~i~Dt~G~~~---~~--------~~~~~~~~~~d~~i~v~D~~~~~s~~~ 110 (198)
T 1f6b_A 65 -TIAG----------------------MTFTTFDLGGHIQ---AR--------RVWKNYLPAINGIVFLVDCADHERLLE 110 (198)
T ss_dssp -EETT----------------------EEEEEEEECC-------C--------CGGGGGGGGCSEEEEEEETTCGGGHHH
T ss_pred -EECC----------------------EEEEEEECCCcHh---hH--------HHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 0111 1678999999732 11 023446789999999999987333444
Q ss_pred HHHHHHHHhc----CCCeEEEEEecCCccC
Q 016165 339 FKRVITSLRG----HDDKIRVVLNKADQVD 364 (394)
Q Consensus 339 ~~~~l~~l~~----~~~~viiv~nK~Dl~~ 364 (394)
...++..+.+ .+.|+++|.||+|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 111 SKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 5555655533 4789999999999864
No 85
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.41 E-value=5.9e-13 Score=132.69 Aligned_cols=122 Identities=17% Similarity=0.307 Sum_probs=73.1
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
++|+|+|++|+|||||+|.|+|... +.++..|+++++..... ..+.+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~T~d~~~~~-----------------~~~~~~------------- 51 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI--SIVEDTPGVTRDRIYSS-----------------AEWLNY------------- 51 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC--C-----------CEEEE-----------------CTTCSS-------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCCccceEEEE-----------------EEECCc-------------
Confidence 4799999999999999999999886 67888888887643211 112221
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~ 357 (394)
.+.++||||+...... +.. .+...+...+.++|++|+++|+.. +.......+.+.+.+.++|+++|.
T Consensus 52 ---------~~~l~DT~G~~~~~~~-~~~--~~~~~~~~~~~~ad~il~vvD~~~-~~~~~d~~~~~~l~~~~~pvilv~ 118 (436)
T 2hjg_A 52 ---------DFNLIDTGGIDIGDEP-FLA--QIRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVVLAV 118 (436)
T ss_dssp ---------CCEEEC---------C-HHH--HHHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHTTCCSCEEEEE
T ss_pred ---------eEEEEECCCCCCcchh-HHH--HHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEE
Confidence 7889999998641110 110 122356778899999999999976 344555566666777789999999
Q ss_pred ecCCccC
Q 016165 358 NKADQVD 364 (394)
Q Consensus 358 nK~Dl~~ 364 (394)
||+|+.+
T Consensus 119 NK~D~~~ 125 (436)
T 2hjg_A 119 NKLDNTE 125 (436)
T ss_dssp ECCCC--
T ss_pred ECccCcc
Confidence 9999864
No 86
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.40 E-value=2.4e-13 Score=126.93 Aligned_cols=114 Identities=25% Similarity=0.289 Sum_probs=79.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|+|.. ..++..|+++..... ..+.+.+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~---~~~~~~~~~t~~~~~-----------------~~~~~~~--------------- 49 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR---QHVGNWPGVTVEKKE-----------------GIMEYRE--------------- 49 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC---EEEEECTTSSCEEEE-----------------EEEEETT---------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---cccCCCCCeEEEeeE-----------------EEEEECC---------------
Confidence 79999999999999999999987 455555555543221 0011111
Q ss_pred cCCccccccceeecCCCCCc--hhhhhhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhcCC-CeE
Q 016165 279 QMPHSLLEHITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHD-DKI 353 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~-~~v 353 (394)
..+.++||||+.+ +....-. +++.++ .++|++++++|++. ......+...+.+.+ .|+
T Consensus 50 -------~~~~l~DtpG~~~~~~~~~~~~-------~~~~~~~~~~~d~vi~v~D~~~---~~~~~~~~~~~~~~~~~p~ 112 (271)
T 3k53_A 50 -------KEFLVVDLPGIYSLTAHSIDEL-------IARNFILDGNADVIVDIVDSTC---LMRNLFLTLELFEMEVKNI 112 (271)
T ss_dssp -------EEEEEEECCCCSCCCSSCHHHH-------HHHHHHHTTCCSEEEEEEEGGG---HHHHHHHHHHHHHTTCCSE
T ss_pred -------ceEEEEeCCCccccccCCHHHH-------HHHHhhhccCCcEEEEEecCCc---chhhHHHHHHHHhcCCCCE
Confidence 1578999999976 2211111 445555 78999999999987 455666666666666 899
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 113 ilv~NK~Dl~~ 123 (271)
T 3k53_A 113 ILVLNKFDLLK 123 (271)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEEChhcCc
Confidence 99999999753
No 87
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.40 E-value=4.2e-13 Score=124.46 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=79.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|.+|||||||+|.|+|.. ..++..|+++...... .+...+
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~---~~~~~~pg~tv~~~~~-----------------~~~~~~--------------- 51 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK---QYVANWPGVTVEKKEG-----------------VFTYKG--------------- 51 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC---EEEEECTTSCCEEEEE-----------------EEEETT---------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---CcccCCCCceEEEEEE-----------------EEEECC---------------
Confidence 79999999999999999999977 4455555554432210 000111
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv 356 (394)
..+.++||||+.+-...... ..+++.++ .++|++++++|++. ......++..+.+.+.|+++|
T Consensus 52 -------~~~~l~DtpG~~~~~~~~~~-----e~v~~~~~~~~~~d~ii~V~D~t~---~~~~~~~~~~l~~~~~pvilv 116 (258)
T 3a1s_A 52 -------YTINLIDLPGTYSLGYSSID-----EKIARDYLLKGDADLVILVADSVN---PEQSLYLLLEILEMEKKVILA 116 (258)
T ss_dssp -------EEEEEEECCCCSSCCSSSHH-----HHHHHHHHHHSCCSEEEEEEETTS---CHHHHHHHHHHHTTTCCEEEE
T ss_pred -------eEEEEEECCCcCccCCCCHH-----HHHHHHHHhhcCCCEEEEEeCCCc---hhhHHHHHHHHHhcCCCEEEE
Confidence 16789999999761100000 01445555 58999999999987 455667778888889999999
Q ss_pred EecCCcc
Q 016165 357 LNKADQV 363 (394)
Q Consensus 357 ~nK~Dl~ 363 (394)
.||+|+.
T Consensus 117 ~NK~Dl~ 123 (258)
T 3a1s_A 117 MTAIDEA 123 (258)
T ss_dssp EECHHHH
T ss_pred EECcCCC
Confidence 9999974
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.40 E-value=1.7e-12 Score=114.31 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=72.4
Q ss_pred cccccCCCCccc-EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCccc
Q 016165 187 PLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLT 265 (394)
Q Consensus 187 ~~l~~~~~~~~~-~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 265 (394)
.+++++++..+. +|+++|++|||||||+|.+++... ....+..+..... +.+.+
T Consensus 12 ~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~--~~~~~t~~~~~~~---------------------~~~~~-- 66 (190)
T 1m2o_B 12 DVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRL--ATLQPTWHPTSEE---------------------LAIGN-- 66 (190)
T ss_dssp ------------CEEEEEESTTSSHHHHHHHHHHSCC--CCCCCCCSCEEEE---------------------EEETT--
T ss_pred HHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCC--CccccCCCCCeEE---------------------EEECC--
Confidence 467777777666 999999999999999999998764 2211111111100 00111
Q ss_pred ccccccchhhhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHH
Q 016165 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITS 345 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~ 345 (394)
..+.++||||...- .. +...++.++|++++++|++..........++..
T Consensus 67 --------------------~~~~i~Dt~G~~~~--~~---------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 115 (190)
T 1m2o_B 67 --------------------IKFTTFDLGGHIQA--RR---------LWKDYFPEVNGIVFLVDAADPERFDEARVELDA 115 (190)
T ss_dssp --------------------EEEEEEECCCSGGG--TT---------SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHH
T ss_pred --------------------EEEEEEECCCCHHH--HH---------HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHH
Confidence 16789999998431 11 223457899999999999874333445555555
Q ss_pred Hhc----CCCeEEEEEecCCccC
Q 016165 346 LRG----HDDKIRVVLNKADQVD 364 (394)
Q Consensus 346 l~~----~~~~viiv~nK~Dl~~ 364 (394)
+.+ .+.|+++|.||+|+.+
T Consensus 116 ~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 116 LFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHcchhhcCCCEEEEEECCCCcC
Confidence 532 4789999999999864
No 89
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.39 E-value=4.5e-13 Score=117.09 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=77.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|++|||||||+|.|++.. ..++..|+++...... .+.+.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~---~~~~~~~~~t~~~~~~-----------------~~~~~~-------------- 53 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGEN---VYIGNWPGVTVEKKEG-----------------EFEYNG-------------- 53 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTC---EEEEECTTSCCEEEEE-----------------EEEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---ccccCCCCeeccceEE-----------------EEEeCC--------------
Confidence 389999999999999999999876 3344444444322110 000111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vii 355 (394)
..+.++||||...-...... ..+++.++ .+++++++++|... ......++..+.+.+.|+++
T Consensus 54 --------~~~~l~Dt~G~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~piil 117 (188)
T 2wjg_A 54 --------EKFKVVDLPGVYSLTANSID-----EIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEMGANLLL 117 (188)
T ss_dssp --------EEEEEEECCCCSCCSSSSHH-----HHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTTTCCEEE
T ss_pred --------cEEEEEECCCcCccccccHH-----HHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhcCCCEEE
Confidence 16789999998651000000 01344444 35999999999976 56667788888777899999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 118 v~nK~Dl~~ 126 (188)
T 2wjg_A 118 ALNKMDLAK 126 (188)
T ss_dssp EEECHHHHH
T ss_pred EEEhhhccc
Confidence 999999743
No 90
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.38 E-value=2.2e-13 Score=127.16 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=50.9
Q ss_pred CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH
Q 016165 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV 371 (394)
Q Consensus 293 t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~ 371 (394)
.++.+| |++||+. +|| +.+.++.+|+...+......++++.+.+. .++|+|+||+|....++....
T Consensus 95 ~~~~LS~G~~qrv~-------iaR-----al~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~ 161 (270)
T 3sop_A 95 LKEEVNIARKKRIP-------DTR-----VHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSEF 161 (270)
T ss_dssp HHHHSCTTCCSSCC-------CCS-----CCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHHH
T ss_pred hHHhcCcccchhhh-------hhe-----eeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHHH
Confidence 355677 8889988 444 45668889976546677778899999887 999999999999887766554
No 91
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.38 E-value=4.4e-12 Score=123.20 Aligned_cols=184 Identities=16% Similarity=0.189 Sum_probs=94.0
Q ss_pred HhcCCceeeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC
Q 016165 170 QKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP 249 (394)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~ 249 (394)
.+++.+...+...+ ...++++++++.+ .|+++|++|||||||+|+|+|... .+.+....|.+..............
T Consensus 9 ~~l~~~~~~~~~~~-~~~~l~~i~~~lp-~I~vvG~~~sGKSSLln~l~g~~~--lp~~~~~vT~~p~~i~~~~~~~~~~ 84 (360)
T 3t34_A 9 NKIQRACTALGDHG-DSSALPTLWDSLP-AIAVVGGQSSGKSSVLESIVGKDF--LPRGSGIVTRRPLVLQLQKIDDGTR 84 (360)
T ss_dssp HHTTTTTTSCSSCC-SSCCC----CCCC-EEEEECBTTSSHHHHHHHHHTSCC--SCCCSSSCCCSCEEEEEEECSSCSC
T ss_pred HHHHHHHHhhCccc-cccccccccccCC-EEEEECCCCCcHHHHHHHHhCCCc--CCCCCCcccCcceEEEEecCCCccc
Confidence 44555544322111 1347777777665 999999999999999999999764 2222222222221111100000000
Q ss_pred Cceeee-ccCCCCCcccccccccchhhh---------------hhcCCccccccceeecCCCCCc---------hhhhhh
Q 016165 250 GNTVAV-QADMPFSGLTTFGTAFLSKFE---------------CSQMPHSLLEHITLVDTPGVLS---------GEKQRT 304 (394)
Q Consensus 250 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~---------------~~~~~~~~l~~~~l~Dt~g~ls---------Ge~qrv 304 (394)
...... .....+......... ..... ..+....-...+.++||||+.+ .+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~-i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~ 163 (360)
T 3t34_A 85 EYAEFLHLPRKKFTDFAAVRKE-IQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIE 163 (360)
T ss_dssp CEEEETTSTTCCBSCHHHHHHH-HHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHH
T ss_pred ceeeeecCCCcccCCHHHHHHH-HHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHH
Confidence 000000 000000000000000 00000 0000001123578999999865 122233
Q ss_pred hcccChHHHHHHHhhcCCEEEEEeCCCCCC-chHHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 305 QRAYDFTGVTSWFAAKCDLILLLFDPHKLD-ISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 305 ~~~~~~~~iaral~~~~dllLl~lD~~~~~-~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
. +++.++.+||++|+++|+...+ .......+++.+...+.++++|+||+|+.+.
T Consensus 164 ~-------~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 164 N-------MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp H-------HHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred H-------HHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCC
Confidence 3 8889999999999988875422 2345577888887778899999999998754
No 92
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.38 E-value=7.4e-13 Score=125.56 Aligned_cols=124 Identities=21% Similarity=0.353 Sum_probs=83.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|+||||||||+|+|+|... .+++..|.+++..+... ..+ .+
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~--~i~s~~~~tTr~~~~gi------------~~~-----~~--------------- 55 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKI--SITSRKAQTTRHRIVGI------------HTE-----GA--------------- 55 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSE--EECCCCSSCCSSCEEEE------------EEE-----TT---------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCCcceeeEEEE------------EEE-----CC---------------
Confidence 899999999999999999999875 56677777766432100 000 01
Q ss_pred cCCccccccceeecCCCCC-chhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEE
Q 016165 279 QMPHSLLEHITLVDTPGVL-SGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~l-sGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~ 357 (394)
..+.++||||+. .. .....+. |...+...+..+|++++++|+.. .......+++.+...+.|+++++
T Consensus 56 -------~~i~~iDTpG~~~~~-~~~l~~~--~~~~~~~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~~~P~ilvl 123 (301)
T 1ega_A 56 -------YQAIYVDTPGLHMEE-KRAINRL--MNKAASSSIGDVELVIFVVEGTR--WTPDDEMVLNKLREGKAPVILAV 123 (301)
T ss_dssp -------EEEEEESSSSCCHHH-HHHHHHH--HTCCTTSCCCCEEEEEEEEETTC--CCHHHHHHHHHHHSSSSCEEEEE
T ss_pred -------eeEEEEECcCCCccc-hhhHHHH--HHHHHHHHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHhcCCCEEEEE
Confidence 167899999996 21 1111100 00123345789999999999865 44455566677776688999999
Q ss_pred ecCCccC-HHHH
Q 016165 358 NKADQVD-TQQL 368 (394)
Q Consensus 358 nK~Dl~~-~~~~ 368 (394)
||+|+.. ...+
T Consensus 124 NK~D~~~~~~~~ 135 (301)
T 1ega_A 124 NKVDNVQEKADL 135 (301)
T ss_dssp ESTTTCCCHHHH
T ss_pred ECcccCccHHHH
Confidence 9999976 4443
No 93
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.37 E-value=8.7e-12 Score=109.12 Aligned_cols=119 Identities=19% Similarity=0.296 Sum_probs=80.2
Q ss_pred ccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhh
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (394)
.++|+++|++|||||||+|.|++... ..++..+++++...... .+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~t~~~~~~~--------------------~~------------- 67 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKI--AFVSKTPGKTRSINFYL--------------------VN------------- 67 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCC--SCCCSSCCCCCCEEEEE--------------------ET-------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCcc--ccccCCCCCccCeEEEE--------------------EC-------------
Confidence 34899999999999999999999874 45555555544322100 00
Q ss_pred hhcCCccccccceeecCCCCCch-----hhhhhhcccChHHHHHHHhhcC---CEEEEEeCCCCCCchHHHHHHHHHHhc
Q 016165 277 CSQMPHSLLEHITLVDTPGVLSG-----EKQRTQRAYDFTGVTSWFAAKC---DLILLLFDPHKLDISDEFKRVITSLRG 348 (394)
Q Consensus 277 ~~~~~~~~l~~~~l~Dt~g~lsG-----e~qrv~~~~~~~~iaral~~~~---dllLl~lD~~~~~~~~~~~~~l~~l~~ 348 (394)
..+.++||||+... ++.+ |..+...++..+ +++++++|+.. ........+++.+..
T Consensus 68 ---------~~~~i~Dt~G~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~ 131 (195)
T 3pqc_A 68 ---------SKYYFVDLPGYGYAKVSKKERML------WKRLVEDYFKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKS 131 (195)
T ss_dssp ---------TTEEEEECCCBSSSCCCHHHHHH------HHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHH
T ss_pred ---------CcEEEEECCCCccccCChhhHHH------HHHHHHHHHhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHH
Confidence 15679999996431 1111 122445555555 89999999875 334555566667766
Q ss_pred CCCeEEEEEecCCccCHH
Q 016165 349 HDDKIRVVLNKADQVDTQ 366 (394)
Q Consensus 349 ~~~~viiv~nK~Dl~~~~ 366 (394)
.+.|+++|.||+|+.+.+
T Consensus 132 ~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 132 LNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp TTCCEEEEEECGGGSCGG
T ss_pred cCCCEEEEEEChhcCChH
Confidence 789999999999997544
No 94
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.35 E-value=1.6e-12 Score=128.17 Aligned_cols=144 Identities=18% Similarity=0.220 Sum_probs=81.0
Q ss_pred CceeeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcC--CC----cccce-eEEEEecCccc
Q 016165 174 PLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIG--PE----PTTDR-FVVVMSGVDDR 246 (394)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs--~~----p~t~r-~~i~~~~~~~~ 246 (394)
.-++++.|++ ..++++++|+ |+|+|+||||||||+|+|+|...+ ..+ +. +.+.+ ..+
T Consensus 14 ~~~l~~~y~~--~~vl~~vsf~----I~lvG~sGaGKSTLln~L~g~~~~--~~~~~~~~~~~~~t~~~~~i-------- 77 (418)
T 2qag_C 14 FANLPNQVYR--KSVKRGFEFT----LMVVGESGLGKSTLINSLFLTDLY--SPEYPGPSHRIKKTVQVEQS-------- 77 (418)
T ss_dssp -CCCCCCTTT--TTCC-CCCEE----EEEECCTTSSHHHHHHHHTTCCCC--CCCCCSCC-----CCEEEEE--------
T ss_pred EEecceeECC--EEEecCCCEE----EEEECCCCCcHHHHHHHHhCCCCC--CCCCCCcccCCccceeeeeE--------
Confidence 3445567766 5688888876 599999999999999999998842 111 00 00100 000
Q ss_pred ccCCceeeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCch---------------------hhhhhh
Q 016165 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG---------------------EKQRTQ 305 (394)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsG---------------------e~qrv~ 305 (394)
++.++. .+. ...+.++||+|+... .++++.
T Consensus 78 -----~~v~q~----~~~--------------------~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~ 128 (418)
T 2qag_C 78 -----KVLIKE----GGV--------------------QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESR 128 (418)
T ss_dssp -----ECC------------------------------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC
T ss_pred -----EEEEec----CCc--------------------ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000010 000 014567788877431 112222
Q ss_pred cccChHHHHHHHhhcCC--EEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHH
Q 016165 306 RAYDFTGVTSWFAAKCD--LILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMR 370 (394)
Q Consensus 306 ~~~~~~~iaral~~~~d--llLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~ 370 (394)
++|+++.+|+ ++|+..+++..+.......+++.+.. +.++|+|+||+|+....++..
T Consensus 129 -------IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~ 187 (418)
T 2qag_C 129 -------VNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQ 187 (418)
T ss_dssp --------CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHH
T ss_pred -------HHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHH
Confidence 5677777776 46666666422345555678888865 789999999999987766543
No 95
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.35 E-value=8.4e-12 Score=109.55 Aligned_cols=121 Identities=17% Similarity=0.295 Sum_probs=74.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.|+++|++|||||||+|.|++.... ..++..+++++....+. + +
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~~-------------------~-~-------------- 68 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFYI-------------------I-N-------------- 68 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEE-------------------E-T--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc-cccCCCCCceeeEEEEE-------------------E-C--------------
Confidence 48999999999999999999987520 23333444333221100 0 0
Q ss_pred hcCCccccccceeecCCCCCch----h-hhhhhcccChHHHHHHHhhcC---CEEEEEeCCCCCCchHHHHHHHHHHhcC
Q 016165 278 SQMPHSLLEHITLVDTPGVLSG----E-KQRTQRAYDFTGVTSWFAAKC---DLILLLFDPHKLDISDEFKRVITSLRGH 349 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsG----e-~qrv~~~~~~~~iaral~~~~---dllLl~lD~~~~~~~~~~~~~l~~l~~~ 349 (394)
..+.++||||+... + +.+ |..+...++..+ |++++++|+.. .......++++.+...
T Consensus 69 --------~~~~l~Dt~G~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~ 133 (195)
T 1svi_A 69 --------DELHFVDVPGYGFAKVSKSEREA------WGRMIETYITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYY 133 (195)
T ss_dssp --------TTEEEEECCCBCCCSSCHHHHHH------HHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT
T ss_pred --------CcEEEEECCCCCccccCHHHHHH------HHHHHHHHHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc
Confidence 16789999996541 0 111 222455666666 99999999876 2344445566666667
Q ss_pred CCeEEEEEecCCccCHHHH
Q 016165 350 DDKIRVVLNKADQVDTQQL 368 (394)
Q Consensus 350 ~~~viiv~nK~Dl~~~~~~ 368 (394)
+.|+++|.||+|+.+.+++
T Consensus 134 ~~p~i~v~nK~Dl~~~~~~ 152 (195)
T 1svi_A 134 GIPVIVIATKADKIPKGKW 152 (195)
T ss_dssp TCCEEEEEECGGGSCGGGH
T ss_pred CCCEEEEEECcccCChHHH
Confidence 8899999999999775544
No 96
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.34 E-value=6.9e-13 Score=132.25 Aligned_cols=123 Identities=19% Similarity=0.284 Sum_probs=79.3
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|.+|+|||||+|.|+|... ..++..|++|++.+.. .+.+.+
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~--~~~~~~~gtT~d~~~~-----------------~~~~~~-------------- 222 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVDT-----------------SFTYNQ-------------- 222 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT--EEEC---------CCE-----------------EEEETT--------------
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc--eeecCCCCceeeeeEE-----------------EEEECC--------------
Confidence 3899999999999999999999885 5577777777653210 000111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHH--HHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGV--TSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~i--aral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vii 355 (394)
..+.++||||++.. .++....+.... +...+.++|++|+++|+.. +...+..+++..+.+.+.++++
T Consensus 223 --------~~~~l~DT~G~~~~--~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~~~~iii 291 (436)
T 2hjg_A 223 --------QEFVIVDTAGMRKK--GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAVVI 291 (436)
T ss_dssp --------EEEEETTHHHHTCB--TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEE
T ss_pred --------eEEEEEECCCcCcC--ccccchHHHHHHHHHHHHHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHcCCcEEE
Confidence 15789999998651 011111111112 2246789999999999987 4455566777777778999999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 292 v~NK~Dl~~ 300 (436)
T 2hjg_A 292 VVNKWDAVD 300 (436)
T ss_dssp EEECGGGSC
T ss_pred EEECccCCC
Confidence 999999865
No 97
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.33 E-value=2.1e-12 Score=118.95 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCc-ccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP-TTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p-~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+|+|+|.+|||||||+|.|+|... ...+..+ ++++...... ....+
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~--~~~~~~~~~~T~~~~~~~-----------------~~~~~-------------- 69 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR--FFSRLGATSVTRACTTGS-----------------RRWDK-------------- 69 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC--C---------CCSCEEEE-----------------EEETT--------------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC--ccccCCCCCccccEEEEE-----------------EEECC--------------
Confidence 899999999999999999999884 3322222 1222111000 00111
Q ss_pred hcCCccccccceeecCCCCCchhh---hhhhcccChHHHHHHH---hhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEK---QRTQRAYDFTGVTSWF---AAKCDLILLLFDPHKLDISDEFKRVITSLRG--- 348 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~---qrv~~~~~~~~iaral---~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~--- 348 (394)
..+.++||||+.+... +... ..+.+++ ...+|++|+++|+.. .......+++.+.+
T Consensus 70 --------~~i~liDTPG~~~~~~~~~~~~~-----~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~ 134 (247)
T 3lxw_A 70 --------CHVEVVDTPDIFSSQVSKTDPGC-----EERGHCYLLSAPGPHALLLVTQLGR--FTAQDQQAVRQVRDMFG 134 (247)
T ss_dssp --------EEEEEEECCSCSSTTHHHHSTTS-----HHHHHHHHHHTTCCSEEEEEEETTB--CCHHHHHHHHHHHHHHC
T ss_pred --------cEEEEEECCCCCCCCCCcHHHHH-----HHHHHHHHhcCCCCCEEEEEEeCCC--CCHHHHHHHHHHHHHhC
Confidence 2678999999976211 1111 1144444 389999999999875 33444444444433
Q ss_pred C---CCeEEEEEecCCccC
Q 016165 349 H---DDKIRVVLNKADQVD 364 (394)
Q Consensus 349 ~---~~~viiv~nK~Dl~~ 364 (394)
. +.|+++++||+|+.+
T Consensus 135 ~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 135 EDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp GGGGGGEEEEEECGGGGTT
T ss_pred hhhhccEEEEEEchHhcCC
Confidence 1 579999999999854
No 98
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.33 E-value=2.3e-12 Score=128.55 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=78.1
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+++|+|+||||||||+|+|+|... ..++..|++|++... ..+.+.|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~--~~v~~~~gtT~d~~~-----------------~~i~~~g-------------- 227 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKER--ALVSPIPGTTRDPVD-----------------DEVFIDG-------------- 227 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT--EEECCCC------CC-----------------EEEEETT--------------
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcc--cccCCCCCCcCCceE-----------------EEEEECC--------------
Confidence 4899999999999999999999885 677888888764321 0011112
Q ss_pred hcCCccccccceeecCCCCCc--hhh-hhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLS--GEK-QRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls--Ge~-qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vi 354 (394)
..+.++||||+.. +.. +..+..... -+...+..+|++++++|+.. +...+...+...+...+++++
T Consensus 228 --------~~~~l~Dt~G~~~~~~~~~~~~e~~~~~--~~~~~i~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~~~~~i 296 (439)
T 1mky_A 228 --------RKYVFVDTAGLRRKSRVEPRTVEKYSNY--RVVDSIEKADVVVIVLDATQ-GITRQDQRMAGLMERRGRASV 296 (439)
T ss_dssp --------EEEEESSCSCC-----------CCSCCH--HHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEE
T ss_pred --------EEEEEEECCCCccccccchhhHHHHHHH--HHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEE
Confidence 1567899999854 111 222211000 12346788999999999875 334444556666666789999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 297 lv~NK~Dl~~~ 307 (439)
T 1mky_A 297 VVFNKWDLVVH 307 (439)
T ss_dssp EEEECGGGSTT
T ss_pred EEEECccCCCc
Confidence 99999998653
No 99
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.32 E-value=7.8e-12 Score=109.98 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=75.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEE--EecCcccccCCceeeeccCCCCCcccccccccchhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVV--MSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 275 (394)
..|+++|++|||||||+|.|++... .....|+.+..... +........... .......+.+............
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTF---HENTNTTIGASFCTYVVNLNDINIKNNS--NNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC---CSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC---CCCcCccccceeEEEEEEecCccccccc--cccccccccccccccccccccc
Confidence 4899999999999999999999873 22223333332211 111100000000 0000000011100010000000
Q ss_pred hhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc-CCCeEE
Q 016165 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-HDDKIR 354 (394)
Q Consensus 276 ~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~-~~~~vi 354 (394)
............+.++||||... |..+...++.++|++|+++|+...........++..+.. .+.|++
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pii 151 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQER-----------YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIII 151 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGG-----------CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cccccCccceeEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 00011111124678999999632 112556788999999999999872223334455655544 458999
Q ss_pred EEEecCCc
Q 016165 355 VVLNKADQ 362 (394)
Q Consensus 355 iv~nK~Dl 362 (394)
+|.||+|+
T Consensus 152 lv~NK~D~ 159 (208)
T 3clv_A 152 LVANKIDK 159 (208)
T ss_dssp EEEECTTC
T ss_pred EEEECCCc
Confidence 99999994
No 100
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.7e-13 Score=135.60 Aligned_cols=165 Identities=12% Similarity=0.012 Sum_probs=96.0
Q ss_pred cccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccc-eeEEEEecCcccccCCceeeeccCC---CCCccccccccc
Q 016165 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-RFVVVMSGVDDRSIPGNTVAVQADM---PFSGLTTFGTAF 271 (394)
Q Consensus 196 ~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~-r~~i~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~ 271 (394)
.+.+++|+||||||||||+++|+|.. .|..+ +. +.+++.. ..+..++++... ....++...+.+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~--------~p~~G~~p-I~vdg~~---~~~i~~vpq~~~l~~~~~~~tv~eni~ 204 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA--------LKFNAYQP-LYINLDP---QQPIFTVPGCISATPISDILDAQLPTW 204 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT--------HHHHCCCC-EEEECCT---TSCSSSCSSCCEEEECCSCCCTTCTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc--------cccCCcee-EEEcCCc---cCCeeeeccchhhcccccccchhhhhc
Confidence 34599999999999999999999998 33333 30 2222211 111111222110 001111111111
Q ss_pred c----hhhhhhcCCccccccceeecC--CCCCc-hhhhhhhcccChHHHHHH--HhhcCCE----EEEE------eCCCC
Q 016165 272 L----SKFECSQMPHSLLEHITLVDT--PGVLS-GEKQRTQRAYDFTGVTSW--FAAKCDL----ILLL------FDPHK 332 (394)
Q Consensus 272 ~----~~~~~~~~~~~~l~~~~l~Dt--~g~ls-Ge~qrv~~~~~~~~iara--l~~~~dl----lLl~------lD~~~ 332 (394)
. ......+.+.++++.+++.+. +..+| ||+||++ +|++ ++.+|++ +|+. +|..
T Consensus 205 ~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrla-------lAra~rL~~~p~i~~sGLlLDEpPts~LD~~- 276 (460)
T 2npi_A 205 GQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLG-------QVVGQRLHLDPQVRRSGCIVDTPSISQLDEN- 276 (460)
T ss_dssp SCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHH-------HHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-
T ss_pred ccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHH-------HHHHHHhccCcccCcceEEEeCCcccccChh-
Confidence 0 001123456677777777542 56677 8999999 9999 9999999 9984 3432
Q ss_pred CCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH--HHHHH-Hh-----Hhhhc-cceeeecCcc
Q 016165 333 LDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ--QLMRV-YG-----ALMWS-LGKVLNTPEV 388 (394)
Q Consensus 333 ~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~--~~~~~-~~-----~~~~~-~G~i~~~~~~ 388 (394)
...+.++++. .+.++++|+|..+. +.. ++..+ ++ +++++ .|+++ .+..
T Consensus 277 ---~~~l~~l~~~---~~~tviiVth~~~~-~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~ 333 (460)
T 2npi_A 277 ---LAELHHIIEK---LNVNIMLVLCSETD-PLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDD 333 (460)
T ss_dssp ---CHHHHHHHHH---TTCCEEEEECCSSC-THHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCH
T ss_pred ---HHHHHHHHHH---hCCCEEEEEccCch-hhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCH
Confidence 3344444443 36778889854220 022 45555 77 88998 99998 5544
No 101
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.32 E-value=4.5e-12 Score=108.16 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=62.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||+|.+++... ...+..++++...... +.+. .
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~--------------------~~~~----~--------- 48 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIV--------------------VDGE----E--------- 48 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC------------CEEEEEEE--------------------ETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHcCccc--cCCCCccccceEEEEE--------------------ECCE----E---------
Confidence 699999999999999999998764 3343334333321110 0000 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||.... ..+...++.++|++++++|............++..+.. .+.|++
T Consensus 49 -------~~~~i~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 110 (166)
T 3q72_A 49 -------ASLMVYDIWEQDGG-----------RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII 110 (166)
T ss_dssp -------EEEEEEECC--------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEE
T ss_pred -------EEEEEEECCCCccc-----------hhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 16679999997431 11445668999999999999872222344455555543 367999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 111 lv~nK~Dl~~~ 121 (166)
T 3q72_A 111 LVGNKSDLVRS 121 (166)
T ss_dssp EEEECTTCCSS
T ss_pred EEEeccccccc
Confidence 99999998643
No 102
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.32 E-value=3.5e-12 Score=108.16 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=72.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|+|||||+|.+.+... ..++..+.++...... .+.+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~--------------- 48 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRS--AVVADVPGVTRDLKEG-----------------VVETDR--------------- 48 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-------------CCEEE-----------------EEEETT---------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe--eeccCCCCceecceEE-----------------EEEeCC---------------
Confidence 689999999999999999999774 3344444443321100 000011
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~n 358 (394)
..+.++||||...... ... .+.......+..+|++++++|.... .......+.+.+.+.+.|+++|.|
T Consensus 49 -------~~~~l~Dt~G~~~~~~--~~~--~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~p~ilv~n 116 (161)
T 2dyk_A 49 -------GRFLLVDTGGLWSGDK--WEK--KIQEKVDRALEDAEVVLFAVDGRAE-LTQADYEVAEYLRRKGKPVILVAT 116 (161)
T ss_dssp -------EEEEEEECGGGCSSSS--CCH--HHHHHHHHHTTTCSEEEEEEESSSC-CCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred -------ceEEEEECCCCCCccc--hHH--HHHHHHHHHHHhCCEEEEEEECCCc-ccHhHHHHHHHHHhcCCCEEEEEE
Confidence 1568999999865210 000 0112445678999999999999762 233333444445445789999999
Q ss_pred cCCccCH
Q 016165 359 KADQVDT 365 (394)
Q Consensus 359 K~Dl~~~ 365 (394)
|+|+.+.
T Consensus 117 K~Dl~~~ 123 (161)
T 2dyk_A 117 KVDDPKH 123 (161)
T ss_dssp CCCSGGG
T ss_pred Ccccccc
Confidence 9998654
No 103
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.32 E-value=1.9e-11 Score=103.97 Aligned_cols=111 Identities=17% Similarity=0.224 Sum_probs=74.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|+|||||+|.+++... . ...|+.+..... +.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~--~--~~~~t~~~~~~~-------------------~~~~~--------------- 43 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIGFNVET-------------------VEYKN--------------- 43 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS--S--CCCCCSSCCEEE-------------------EECSS---------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc--C--cccCcCceeEEE-------------------EEECC---------------
Confidence 589999999999999999998763 1 123322211100 00111
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... |..+.+.++.++|++++++|+...........++..+.. .+.|++
T Consensus 44 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 105 (164)
T 1r8s_A 44 -------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105 (164)
T ss_dssp -------CEEEEEECCCCGG-----------GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred -------EEEEEEEcCCChh-----------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE
Confidence 1678999999832 122556678999999999999873334445556665543 378999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 106 lv~nK~Dl~~~ 116 (164)
T 1r8s_A 106 VFANKQDLPNA 116 (164)
T ss_dssp EEEECTTSTTC
T ss_pred EEEECcCCcCC
Confidence 99999999653
No 104
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=118.30 Aligned_cols=124 Identities=14% Similarity=0.237 Sum_probs=67.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCc--ccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP--TTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p--~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (394)
+|+|+|++|||||||+|.|+|.. ...+..+ ++++..... ...+.+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~---~~~~~~~~~~~t~~~~~~-----------------~~~~~~------------- 77 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK---VFHSGTAAKSITKKCEKR-----------------SSSWKE------------- 77 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC---CSCC-------CCSCEEE-----------------EEEETT-------------
T ss_pred EEEEECCCCCCHHHHHHHHcCCC---cCccCCCCCceeeeEEEE-----------------EEEeCC-------------
Confidence 89999999999999999999988 3333333 222211100 000111
Q ss_pred hhcCCccccccceeecCCCCCchhh--hhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc-----C
Q 016165 277 CSQMPHSLLEHITLVDTPGVLSGEK--QRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-----H 349 (394)
Q Consensus 277 ~~~~~~~~l~~~~l~Dt~g~lsGe~--qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~-----~ 349 (394)
..+.++||||+.++.. +.+.+. +..........++++|+++|+.... .....++..+.+ .
T Consensus 78 ---------~~i~liDTpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~d~~~~~--~~~~~~l~~~~~~~~~~~ 144 (239)
T 3lxx_A 78 ---------TELVVVDTPGIFDTEVPNAETSKE--IIRCILLTSPGPHALLLVVPLGRYT--EEEHKATEKILKMFGERA 144 (239)
T ss_dssp ---------EEEEEEECCSCC-----CHHHHHH--HHHHHHHTTTCCSEEEEEEETTCCS--SHHHHHHHHHHHHHHHHH
T ss_pred ---------ceEEEEECCCccCCCCCHHHHHHH--HHHHHHhcCCCCcEEEEEeeCCCCC--HHHHHHHHHHHHHhhhhc
Confidence 1678999999876211 111100 1112233346789999999986522 233344443321 2
Q ss_pred CCeEEEEEecCCccCHHHH
Q 016165 350 DDKIRVVLNKADQVDTQQL 368 (394)
Q Consensus 350 ~~~viiv~nK~Dl~~~~~~ 368 (394)
..|+++|+||+|+.+...+
T Consensus 145 ~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 145 RSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp GGGEEEEEECGGGC-----
T ss_pred cceEEEEEeCCccCCcccH
Confidence 4589999999998765443
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.31 E-value=4.7e-12 Score=109.32 Aligned_cols=113 Identities=19% Similarity=0.313 Sum_probs=75.0
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.|+++|++|||||||+|.|++... .....|+++.... ...+.+.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~-----------------~~~~~~~~-------------- 54 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKV---TEQEAGGITQHIG-----------------AYQVTVND-------------- 54 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCS---SCSSCCSSSTTCC-----------------CCEEEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcc---ccCCCCceeEeee-----------------EEEEEeCC--------------
Confidence 3899999999999999999998763 2222232222100 00000111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~ 357 (394)
..+.++||||...-.. +....+..+|++|+++|+.. .......+.++.+...+.|+++|.
T Consensus 55 --------~~~~l~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~l~~~~~~~~p~ilv~ 114 (178)
T 2lkc_A 55 --------KKITFLDTPGHEAFTT-----------MRARGAQVTDIVILVVAADD-GVMPQTVEAINHAKAANVPIIVAI 114 (178)
T ss_dssp --------EEEEESCCCSSSSSSC-----------SCCSSCCCCCEEEEEEETTC-CCCHHHHHHHHHHGGGSCCEEEEE
T ss_pred --------ceEEEEECCCCHHHHH-----------HHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHhCCCCEEEEE
Confidence 1567999999854100 11123688999999999875 334566677777777788999999
Q ss_pred ecCCccC
Q 016165 358 NKADQVD 364 (394)
Q Consensus 358 nK~Dl~~ 364 (394)
||+|+.+
T Consensus 115 nK~Dl~~ 121 (178)
T 2lkc_A 115 NKMDKPE 121 (178)
T ss_dssp ETTTSSC
T ss_pred ECccCCc
Confidence 9999975
No 106
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.30 E-value=9.3e-12 Score=109.52 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=74.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||+|.|++... ..+...|+.+.....+ ...+
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~~t~~~~~~~~-------------------~~~~--------------- 62 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQS--SSKHITATVGYNVETF-------------------EKGR--------------- 62 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC------CCCCCSSEEEEEE-------------------EETT---------------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--cccccccccceeEEEE-------------------EeCC---------------
Confidence 899999999999999999999774 2222233322111100 0011
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcC---------
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--------- 349 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~--------- 349 (394)
..+.++||||... -+ .+...++.++|++|+++|+...........++..+...
T Consensus 63 -------~~~~i~Dt~G~~~---~~--------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 124 (199)
T 4bas_A 63 -------VAFTVFDMGGAKK---FR--------GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPG 124 (199)
T ss_dssp -------EEEEEEEECCSGG---GG--------GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTT
T ss_pred -------EEEEEEECCCCHh---HH--------HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccc
Confidence 1678999999843 11 12234578999999999998743344555666665543
Q ss_pred --CCeEEEEEecCCccCH
Q 016165 350 --DDKIRVVLNKADQVDT 365 (394)
Q Consensus 350 --~~~viiv~nK~Dl~~~ 365 (394)
+.|+++|.||+|+.+.
T Consensus 125 ~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 125 GGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp SCBCCEEEEEECTTSTTC
T ss_pred cCCCCEEEEEECcCCCCC
Confidence 7899999999999765
No 107
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.30 E-value=5.1e-13 Score=115.99 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=50.4
Q ss_pred eeecCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCC--C-----------chHHHHHHHHHHhcC
Q 016165 289 TLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKL--D-----------ISDEFKRVITSLRGH 349 (394)
Q Consensus 289 ~l~Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~--~-----------~~~~~~~~l~~l~~~ 349 (394)
.+.|.....| |++|++. +|++++.+|+++++ ++|+... . ....+.++++.++++
T Consensus 76 ~~~~~~~~~s~g~~qrv~-------iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~ 148 (171)
T 4gp7_A 76 TVVDATNVQESARKPLIE-------MAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE 148 (171)
T ss_dssp EEEESCCCSHHHHHHHHH-------HHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH
T ss_pred EEEECCCCCHHHHHHHHH-------HHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc
Confidence 3556666667 8999999 99999999999998 5665410 0 135556666666666
Q ss_pred CCeEEEEEecCCccCHHHHHH
Q 016165 350 DDKIRVVLNKADQVDTQQLMR 370 (394)
Q Consensus 350 ~~~viiv~nK~Dl~~~~~~~~ 370 (394)
|.++|+++ |+.+++..
T Consensus 149 g~tvi~vt-----H~~~~~~~ 164 (171)
T 4gp7_A 149 GFRYVYIL-----NSPEEVEE 164 (171)
T ss_dssp TCSEEEEE-----CSHHHHHH
T ss_pred CCcEEEEe-----CCHHHhhh
Confidence 88999998 77777654
No 108
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.30 E-value=1.1e-13 Score=146.73 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=76.3
Q ss_pred Cccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhc---CCEEEE-----EeCCCCCCchHHHHHHHHHH
Q 016165 281 PHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK---CDLILL-----LFDPHKLDISDEFKRVITSL 346 (394)
Q Consensus 281 ~~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~---~dllLl-----~lD~~~~~~~~~~~~~l~~l 346 (394)
+.++++.+++.. .++.+| ||+||+. +|++++.+ |+++|+ ++|+.. ...+.++++.+
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~-------LAraL~~~p~~p~lLILDEPTsGLD~~~---~~~l~~lL~~L 779 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELSGGEAQRIK-------LATELRRSGRGGTVYVLDEPTTGLHPAD---VERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHH-------HHHTTSSCCSSCEEEEEECTTTTCCHHH---HHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCCcccCCHHHHHHHH-------HHHHHHhCCCCCCEEEEECCCCCCCHHH---HHHHHHHHHHH
Confidence 345666666633 567888 9999999 99999996 699998 777765 77888999999
Q ss_pred hcCCCeEEEEEecCCccCHHHHHHHHhHhhh------ccceeeecCcccee
Q 016165 347 RGHDDKIRVVLNKADQVDTQQLMRVYGALMW------SLGKVLNTPEVVRV 391 (394)
Q Consensus 347 ~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~------~~G~i~~~~~~~~v 391 (394)
.+.|.+||+|. |+.+.+...|+++.+ +.|+++..++..++
T Consensus 780 ~~~G~tVIvis-----Hdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 780 VDAGNTVIAVE-----HKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEV 825 (842)
T ss_dssp HHTTCEEEEEC-----CCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HhCCCEEEEEc-----CCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHH
Confidence 88888888888 888887434999999 78999987766554
No 109
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.30 E-value=1.3e-11 Score=105.75 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=73.8
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.+.+... . ...|+.+..... +.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~--~--~~~~t~~~~~~~-------------------~~~~~-------------- 50 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEV--V--TTIPTIGFNVET-------------------VTYKN-------------- 50 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--C--CCCCCSSEEEEE-------------------EEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--C--CcCCcCccceEE-------------------EEECC--------------
Confidence 4899999999999999999998663 1 122222211000 00011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++||||... .+ .+...++.++|++|+++|+...........++..+.. .+.|+
T Consensus 51 --------~~~~~~Dt~G~~~---~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 111 (171)
T 1upt_A 51 --------LKFQVWDLGGLTS---IR--------PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAIL 111 (171)
T ss_dssp --------EEEEEEEECCCGG---GG--------GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEE
T ss_pred --------EEEEEEECCCChh---hh--------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEE
Confidence 2678999999843 11 1223457899999999999874434555555555543 47899
Q ss_pred EEEEecCCccCH
Q 016165 354 RVVLNKADQVDT 365 (394)
Q Consensus 354 iiv~nK~Dl~~~ 365 (394)
++|.||+|+.+.
T Consensus 112 ilv~nK~Dl~~~ 123 (171)
T 1upt_A 112 VVFANKQDMEQA 123 (171)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECCCCcCC
Confidence 999999999654
No 110
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=106.68 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=68.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.|++... ......++++.....+ .+.+. .
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~----~--------- 51 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQE--RDLHEQLGEDVYERTL-------------------TVDGE----D--------- 51 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-------CCCSSSSEEEEEE-------------------EETTE----E---------
T ss_pred EEEEECCCCccHHHHHHHHhcCCC--ccccCccccceeEEEE-------------------EECCE----E---------
Confidence 799999999999999999998774 3332222222111000 00110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||...-+ +..+...++..+|++++++|............++..+.+ .+.|++
T Consensus 52 -------~~~~~~D~~g~~~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pii 115 (175)
T 2nzj_A 52 -------TTLVVVDTWEAEKLD---------KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPII 115 (175)
T ss_dssp -------EEEEEECCC----------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEE
T ss_pred -------EEEEEEecCCCCccc---------hhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEE
Confidence 156799999984310 112556678899999999999862222334445555543 268999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 116 lv~NK~Dl~~~ 126 (175)
T 2nzj_A 116 LVGNKADLARC 126 (175)
T ss_dssp EEEECTTCTTT
T ss_pred EEEEChhhccc
Confidence 99999998653
No 111
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.29 E-value=9.6e-12 Score=108.44 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=73.2
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.+.+... ..+ .|+.+. .. ..+.+.+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~--~~~--~~t~g~----------------~~---~~~~~~~-------------- 59 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDI--SHI--TPTQGF----------------NI---KSVQSQG-------------- 59 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCC--EEE--EEETTE----------------EE---EEEEETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--Ccc--cCcCCe----------------EE---EEEEECC--------------
Confidence 3899999999999999999998652 111 111110 00 0000111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++||||... |..+...++.++|++++++|+...........++..+.. .+.|+
T Consensus 60 --------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 120 (181)
T 1fzq_A 60 --------FKLNVWDIGGQRK-----------IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120 (181)
T ss_dssp --------EEEEEEECSSCGG-----------GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCE
T ss_pred --------EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence 1678999999732 112456678999999999999873333444455555432 46899
Q ss_pred EEEEecCCccCH
Q 016165 354 RVVLNKADQVDT 365 (394)
Q Consensus 354 iiv~nK~Dl~~~ 365 (394)
++|.||+|+.+.
T Consensus 121 ilv~NK~Dl~~~ 132 (181)
T 1fzq_A 121 LIFANKQDLLTA 132 (181)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECcCcccC
Confidence 999999998653
No 112
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.29 E-value=7.2e-12 Score=113.47 Aligned_cols=121 Identities=20% Similarity=0.305 Sum_probs=75.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.|++.. ..++..+.+++..... ...+.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~---~~~~~~~~~t~~~~~~-----------------~~~~~~-------------- 75 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN---VDVQSYSFTTKNLYVG-----------------HFDHKL-------------- 75 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC---EEEECC-----CEEEE-----------------EEEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCcceeeeee-----------------eeecCC--------------
Confidence 389999999999999999999876 3233344444322110 000011
Q ss_pred hcCCccccccceeecCCCCCch---hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCc--hHHHHHHHHHHhcC--C
Q 016165 278 SQMPHSLLEHITLVDTPGVLSG---EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDI--SDEFKRVITSLRGH--D 350 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsG---e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~--~~~~~~~l~~l~~~--~ 350 (394)
..+.++||||..+. ++.... +. ..+.+...+|++|+++|++.... ......++..+... +
T Consensus 76 --------~~~~l~DtpG~~~~~~~~~~~~~----~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~ 142 (228)
T 2qu8_A 76 --------NKYQIIDTPGLLDRAFENRNTIE----MT-TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSN 142 (228)
T ss_dssp --------EEEEEEECTTTTTSCGGGCCHHH----HH-HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-C
T ss_pred --------CeEEEEECCCCcCcccchhhhHH----HH-HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcC
Confidence 16789999999651 221111 11 12345788999999999976321 13345677777665 7
Q ss_pred CeEEEEEecCCccCH
Q 016165 351 DKIRVVLNKADQVDT 365 (394)
Q Consensus 351 ~~viiv~nK~Dl~~~ 365 (394)
.|+++|.||+|+.+.
T Consensus 143 ~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 143 KSIVIGFNKIDKCNM 157 (228)
T ss_dssp CCEEEEEECGGGCC-
T ss_pred CcEEEEEeCcccCCc
Confidence 899999999999654
No 113
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.29 E-value=9.8e-12 Score=120.73 Aligned_cols=115 Identities=23% Similarity=0.405 Sum_probs=77.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+|+|.||||||||||+|+|.. +.++..|.||++.+... +.+.+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~---~~v~~~pftT~~~~~g~-----------------~~~~~--------------- 118 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE---SEAAEYEFTTLVTVPGV-----------------IRYKG--------------- 118 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC---CCGGGTCSSCCCEEEEE-----------------EEETT---------------
T ss_pred eEEEECCCCCCHHHHHHHHhCCC---CcccCCCCceeeeeeEE-----------------EEeCC---------------
Confidence 89999999999999999999987 78888999998765310 01112
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHH-HHHHhc-----CCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRV-ITSLRG-----HDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~-l~~l~~-----~~~~ 352 (394)
..+.++||||+..|..+...... -..+.++++|++++++|+.. .....+. ..+|.. ..+|
T Consensus 119 -------~~i~l~D~pGl~~~a~~~~~~g~----~~l~~i~~ad~il~vvD~~~---p~~~~~~i~~EL~~~~~~l~~k~ 184 (376)
T 4a9a_A 119 -------AKIQMLDLPGIIDGAKDGRGRGK----QVIAVARTCNLLFIILDVNK---PLHHKQIIEKELEGVGIRLNKTP 184 (376)
T ss_dssp -------EEEEEEECGGGCCC-----CHHH----HHHHHHHHCSEEEEEEETTS---HHHHHHHHHHHHHHTTEEETCCC
T ss_pred -------cEEEEEeCCCccCCchhhhHHHH----HHHHHHHhcCccccccccCc---cHHHHHHHHHHHHHhhHhhccCC
Confidence 17789999999874333322111 12346789999999999986 2222332 233332 2457
Q ss_pred EEEEEecCCc
Q 016165 353 IRVVLNKADQ 362 (394)
Q Consensus 353 viiv~nK~Dl 362 (394)
.+++.||+|.
T Consensus 185 ~~i~~nK~d~ 194 (376)
T 4a9a_A 185 PDILIKKKEK 194 (376)
T ss_dssp CCEEEEECSS
T ss_pred hhhhhhHhhh
Confidence 7889999985
No 114
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.29 E-value=3.1e-11 Score=105.67 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=74.7
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.|++... .....|+.+..... +...+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~-------------------~~~~~-------------- 66 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQF---NEDMIPTVGFNMRK-------------------ITKGN-------------- 66 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC---CCSCCCCCSEEEEE-------------------EEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCC---CCccCCCCceeEEE-------------------EEeCC--------------
Confidence 3899999999999999999998763 21222222221110 00011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++||||... - ..+...++.++|++|+++|+...........++..+.. .+.|+
T Consensus 67 --------~~~~l~Dt~G~~~---~--------~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi 127 (188)
T 1zd9_A 67 --------VTIKLWDIGGQPR---F--------RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV 127 (188)
T ss_dssp --------EEEEEEEECCSHH---H--------HTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE
T ss_pred --------EEEEEEECCCCHh---H--------HHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCE
Confidence 1678999999732 1 11445678999999999999763334455555555543 47899
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 128 ilv~NK~Dl~~ 138 (188)
T 1zd9_A 128 LVLGNKRDLPG 138 (188)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECCCCcc
Confidence 99999999864
No 115
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.28 E-value=1.2e-11 Score=120.07 Aligned_cols=126 Identities=27% Similarity=0.395 Sum_probs=79.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..++++|+||||||||+|.|++.. ..++..|.+++...... +...+
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~---~~~~~~~~~t~~~~~~~-----------------~~~~~-------------- 213 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK---PEIASYPFTTRGINVGQ-----------------FEDGY-------------- 213 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC---CEEECCTTCSSCEEEEE-----------------EEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCeeeceeEEE-----------------EEecC--------------
Confidence 389999999999999999999977 44444555544321100 00001
Q ss_pred hcCCccccccceeecCCCCCc---hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCC--chHHHHHHHHHHhc--CC
Q 016165 278 SQMPHSLLEHITLVDTPGVLS---GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD--ISDEFKRVITSLRG--HD 350 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls---Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~--~~~~~~~~l~~l~~--~~ 350 (394)
..+.++||||... .+...+.+ ....++...+|.+|+++|++... ......+++..+.. .+
T Consensus 214 --------~~~~l~Dt~G~~~~~~~~~~~~~~-----~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~ 280 (357)
T 2e87_A 214 --------FRYQIIDTPGLLDRPISERNEIEK-----QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD 280 (357)
T ss_dssp --------EEEEEEECTTTSSSCSTTSCHHHH-----HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT
T ss_pred --------ceEEEEeCCCccccchhhhhHHHH-----HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC
Confidence 1578999999865 11111110 01124567899999999986522 23444555555543 27
Q ss_pred CeEEEEEecCCccCHHHHHH
Q 016165 351 DKIRVVLNKADQVDTQQLMR 370 (394)
Q Consensus 351 ~~viiv~nK~Dl~~~~~~~~ 370 (394)
.|+++|.||+|+.+...+..
T Consensus 281 ~piilV~NK~Dl~~~~~~~~ 300 (357)
T 2e87_A 281 LPFLVVINKIDVADEENIKR 300 (357)
T ss_dssp SCEEEEECCTTTCCHHHHHH
T ss_pred CCEEEEEECcccCChHHHHH
Confidence 89999999999987655433
No 116
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.28 E-value=3.1e-12 Score=128.22 Aligned_cols=118 Identities=21% Similarity=0.323 Sum_probs=81.6
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..++++|.+|+|||||+|.|++... ..++..|+++++.+. ..+.+.+
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~~~--~~~~~~~gtt~~~~~-----------------~~~~~~~-------------- 242 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVD-----------------TSFTYNQ-------------- 242 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT--EEECC------CTTS-----------------EEEEETT--------------
T ss_pred ceeEEecCCCCCHHHHHHHHhCCCc--cccCCCCCeEEEEEE-----------------EEEEECC--------------
Confidence 4899999999999999999999875 666777777663210 0000111
Q ss_pred hcCCccccccceeecCCCCCc-h------hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCC
Q 016165 278 SQMPHSLLEHITLVDTPGVLS-G------EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHD 350 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls-G------e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~ 350 (394)
..+.++||||++. + |+-... .+...+..+|++|+++|+.. +...+...++..+.+.+
T Consensus 243 --------~~~~l~DT~G~~~~~~~~~~~e~~~~~-------~~~~~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~~ 306 (456)
T 4dcu_A 243 --------QEFVIVDTAGMRKKGKVYETTEKYSVL-------RALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAG 306 (456)
T ss_dssp --------EEEEETTGGGTTTBTTBCCCCSHHHHH-------HHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTT
T ss_pred --------ceEEEEECCCCCcCcccchHHHHHHHH-------HHHHHHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHcC
Confidence 1678999999865 1 222221 22346789999999999986 55677778888887788
Q ss_pred CeEEEEEecCCccC
Q 016165 351 DKIRVVLNKADQVD 364 (394)
Q Consensus 351 ~~viiv~nK~Dl~~ 364 (394)
.++++|.||+|+.+
T Consensus 307 ~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 307 KAVVIVVNKWDAVD 320 (456)
T ss_dssp CEEEEEEECGGGSC
T ss_pred CCEEEEEEChhcCC
Confidence 99999999999864
No 117
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.28 E-value=4.7e-13 Score=142.55 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=75.4
Q ss_pred ccccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhcC---CEEEE-----EeCCCCCCchHHHHHHHHHHh
Q 016165 282 HSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC---DLILL-----LFDPHKLDISDEFKRVITSLR 347 (394)
Q Consensus 282 ~~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~---dllLl-----~lD~~~~~~~~~~~~~l~~l~ 347 (394)
.++++.+++.+ .++.+| ||+||+. +|++++.+| +++|+ ++|+.. ...+.++|+.+.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~-------LAraL~~~p~~p~lLILDEPTsGLD~~~---~~~l~~lL~~L~ 895 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVK-------LAAELHRRSNGRTLYILDEPTTGLHVDD---IARLLDVLHRLV 895 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHH-------HHHHHSSCCCSCEEEEEECTTTTCCHHH---HHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHH-------HHHHHhcCCCCCCEEEEECCCCCCCHHH---HHHHHHHHHHHH
Confidence 35566666643 567888 9999999 999999865 89998 777765 778889999998
Q ss_pred cCCCeEEEEEecCCccCHHHHHHHHhHhhh------ccceeeecCcccee
Q 016165 348 GHDDKIRVVLNKADQVDTQQLMRVYGALMW------SLGKVLNTPEVVRV 391 (394)
Q Consensus 348 ~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~------~~G~i~~~~~~~~v 391 (394)
+.|.+||+|. |+.+.+...|+++++ +.|+++..+.+.++
T Consensus 896 ~~G~TVIvis-----Hdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 896 DNGDTVLVIE-----HNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940 (972)
T ss_dssp HTTCEEEEEC-----CCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHH
T ss_pred hCCCEEEEEc-----CCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHH
Confidence 8888888888 777776434999999 78999987766554
No 118
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=1.9e-11 Score=106.78 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=72.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.+++... . ...|+.+. .. ..+.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~--~--~~~~t~~~----------------~~---~~~~~~~-------------- 59 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEV--V--HTSPTIGS----------------NV---EEIVINN-------------- 59 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSC--E--EEECCSCS----------------SC---EEEEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--C--cCcCCCcc----------------ce---EEEEECC--------------
Confidence 3899999999999999999997663 1 11111110 00 0000011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++||||... . ..+.+.++.++|++|+++|+...........++..+.+ .+.|+
T Consensus 60 --------~~~~i~Dt~G~~~---~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 120 (187)
T 1zj6_A 60 --------TRFLMWDIGGQES---L--------RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120 (187)
T ss_dssp --------EEEEEEECCC---------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEE
T ss_pred --------EEEEEEECCCCHh---H--------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeE
Confidence 2778999999843 1 11345678999999999999874444555666666644 47899
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 121 ilv~NK~Dl~~ 131 (187)
T 1zj6_A 121 LIFANKQDVKE 131 (187)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECCCCcC
Confidence 99999999965
No 119
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.27 E-value=1.7e-11 Score=104.19 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=70.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....|.++..... .+.+.+. .
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 51 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDEF---VEDYEPTKADSYRK------------------KVVLDGE----E--------- 51 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEE------------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCcc---CCCCCCCcceEEEE------------------EEEECCE----E---------
Confidence 799999999999999999998763 22212222221100 0000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... |..+.+.++.++|++++++|+...........++..+.. .+.|++
T Consensus 52 -------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 113 (168)
T 1u8z_A 52 -------VQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113 (168)
T ss_dssp -------EEEEEEECCC--------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE
T ss_pred -------EEEEEEECCCcch-----------hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 1678999999743 122556778999999999999862222333344444332 378999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 114 lv~nK~Dl~~ 123 (168)
T 1u8z_A 114 LVGNKSDLED 123 (168)
T ss_dssp EEEECGGGGG
T ss_pred EEEECccccc
Confidence 9999999864
No 120
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=1.8e-11 Score=104.68 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=70.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....|..+..... . ....+ .
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~--------------~----~~~~~----~---------- 49 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTF---RESYIPTVEDTYRQ--------------V----ISCDK----S---------- 49 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCC---CSSCCCCSCEEEEE--------------E----EEETT----E----------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCCCccccEEE--------------E----EEECC----E----------
Confidence 799999999999999999998663 11112221111000 0 00000 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc-----CCCeE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-----HDDKI 353 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~-----~~~~v 353 (394)
...+.++||||... |..+.+.++.++|++++++|+...........++..+.+ .+.|+
T Consensus 50 ------~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pi 112 (172)
T 2erx_A 50 ------ICTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112 (172)
T ss_dssp ------EEEEEEEECCSCSS-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCE
T ss_pred ------EEEEEEEECCCchh-----------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCE
Confidence 01578999999854 112556678899999999999862212222333333332 36799
Q ss_pred EEEEecCCccCH
Q 016165 354 RVVLNKADQVDT 365 (394)
Q Consensus 354 iiv~nK~Dl~~~ 365 (394)
++|.||+|+.+.
T Consensus 113 i~v~nK~Dl~~~ 124 (172)
T 2erx_A 113 MLVGNKCDESPS 124 (172)
T ss_dssp EEEEECGGGGGG
T ss_pred EEEEEccccccc
Confidence 999999998643
No 121
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=1.6e-11 Score=106.16 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=71.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.|++... ......|+++....... +.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~t~~~~~~~~~-----------------~~~~~~-------------- 58 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF--LAGTFISTVGIDFRNKV-----------------LDVDGV-------------- 58 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC--CCCCCCCCCSCEEEEEE-----------------EEETTE--------------
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC--CCCCcCCceeeEEEEEE-----------------EEECCE--------------
Confidence 899999999999999999999774 22233344433221100 000110
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vii 355 (394)
-..+.++||||... |..+...++.++|++|+++|+........+..++..+. ..+.|+++
T Consensus 59 ------~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 121 (180)
T 2g6b_A 59 ------KVKLQMWDTAGQER-----------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121 (180)
T ss_dssp ------EEEEEEEECCCC-------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred ------EEEEEEEeCCCcHH-----------HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 01678999999743 11134456789999999999987222222334444443 35789999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 122 v~nK~Dl~~ 130 (180)
T 2g6b_A 122 LGNKVDSAH 130 (180)
T ss_dssp EEECCSTTS
T ss_pred EEECcccCc
Confidence 999999864
No 122
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.26 E-value=1.1e-11 Score=107.72 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=72.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|.+|+|||||+|.|++... ......++.....+ .+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~~~~---------------------~~~~--------------- 64 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSNVEEI---------------------VINN--------------- 64 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTSC--EEEECCSSSSCEEE---------------------EETT---------------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CccCCcCceeeEEE---------------------EECC---------------
Confidence 899999999999999999998762 11111111000000 0011
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... .+ .+...++.++|++|+++|+...........++..+.+ .+.|++
T Consensus 65 -------~~~~i~Dt~G~~~---~~--------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii 126 (181)
T 2h17_A 65 -------TRFLMWDIGGQES---LR--------SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 126 (181)
T ss_dssp -------EEEEEEEESSSGG---GT--------CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred -------EEEEEEECCCCHh---HH--------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEE
Confidence 2778999999833 11 1234467899999999999874444555556655543 578999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 127 lv~NK~Dl~~ 136 (181)
T 2h17_A 127 IFANKQDVKE 136 (181)
T ss_dssp EEEECTTSTT
T ss_pred EEEECCCccc
Confidence 9999999865
No 123
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.26 E-value=7.3e-12 Score=109.88 Aligned_cols=118 Identities=18% Similarity=0.265 Sum_probs=69.3
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.|++...+....+..|.++. .+.+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~------------------------~~~~-------------- 90 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------------------------DYDG-------------- 90 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC------------------------------------CCCC--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee------------------------eecC--------------
Confidence 48999999999999999999997731011111111111 0011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCC-CCCchHHHHHHHHHHh-------cC
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPH-KLDISDEFKRVITSLR-------GH 349 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~-~~~~~~~~~~~l~~l~-------~~ 349 (394)
..+.++||||.......... ..+..+..+|++|+++|+. ..........++..+. ..
T Consensus 91 --------~~~~l~Dt~G~~~~~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (193)
T 2ged_A 91 --------SGVTLVDFPGHVKLRYKLSD-------YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 155 (193)
T ss_dssp --------TTCSEEEETTCCBSSCCHHH-------HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred --------CeEEEEECCCCchHHHHHHH-------HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhcccc
Confidence 16789999998651111111 2233445699999999998 4111222233333332 24
Q ss_pred CCeEEEEEecCCccCHHHH
Q 016165 350 DDKIRVVLNKADQVDTQQL 368 (394)
Q Consensus 350 ~~~viiv~nK~Dl~~~~~~ 368 (394)
+.|+++|.||+|+.+...+
T Consensus 156 ~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 156 GIDILIACNKSELFTARPP 174 (193)
T ss_dssp CCCEEEEEECTTSTTCCCH
T ss_pred CCCEEEEEEchHhcCCCCH
Confidence 7899999999999754433
No 124
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=108.85 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=75.3
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|++|||||||+|.|++.. ......|..+....... +.+.+. .
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~----~-------- 64 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT---YTESYISTIGVDFKIRT-----------------IELDGK----T-------- 64 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC---CCSCCCCCSSEEEEEEE-----------------EEETTE----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC---CCCCCCCcccceEEEEE-----------------EEECCE----E--------
Confidence 389999999999999999999977 33333444443221100 000110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH---hcCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l---~~~~~~vi 354 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+ ...+.|++
T Consensus 65 --------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i 125 (196)
T 3tkl_A 65 --------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 125 (196)
T ss_dssp --------EEEEEEEECCSGG-----------GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEECCCcHh-----------hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 1578999999632 1114566789999999999998722222233444443 33478999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 126 lv~nK~Dl~~~ 136 (196)
T 3tkl_A 126 LVGNKCDLTTK 136 (196)
T ss_dssp EEEECTTCTTT
T ss_pred EEEECcccccc
Confidence 99999998654
No 125
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.26 E-value=2.6e-11 Score=102.98 Aligned_cols=114 Identities=16% Similarity=0.259 Sum_probs=71.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....|.++..... .+.+.+. .
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~------------------~~~~~~~----~--------- 50 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTF---IEKYDPTIEDFYRK------------------EIEVDSS----P--------- 50 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEE------------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---cccCCCCcceeEEE------------------EEEECCE----E---------
Confidence 799999999999999999998763 21222222211100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
..+.++||||... |..+...++.++|.+++++|............++..+. ..+.|++
T Consensus 51 -------~~~~l~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 112 (167)
T 1kao_A 51 -------SVLEILDTAGTEQ-----------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112 (167)
T ss_dssp -------EEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred -------EEEEEEECCCchh-----------hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1578999999743 12245567899999999999986222223333433332 2478999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 113 lv~nK~Dl~~ 122 (167)
T 1kao_A 113 LVGNKVDLES 122 (167)
T ss_dssp EEEECGGGGG
T ss_pred EEEECCcccc
Confidence 9999999854
No 126
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.26 E-value=2.2e-11 Score=103.70 Aligned_cols=114 Identities=15% Similarity=0.206 Sum_probs=71.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+.+... .....|..+. .... .+.+.+. .
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~-~~~~-----------------~~~~~~~----~--------- 50 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIED-SYRK-----------------QVEVDCQ----Q--------- 50 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC---CCSCCCCSEE-EEEE-----------------EEESSSC----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCCCccc-eEEE-----------------EEEECCE----E---------
Confidence 799999999999999999998663 2111222221 1100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
..+.++||||.... ..+...++.++|++++++|............++..+. ..+.|++
T Consensus 51 -------~~~~l~D~~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 112 (167)
T 1c1y_A 51 -------CMLEILDTAGTEQF-----------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112 (167)
T ss_dssp -------EEEEEEEECSSCSS-----------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE
T ss_pred -------EEEEEEECCChHHH-----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE
Confidence 16789999997431 1145667889999999999986211122233333332 3478999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 113 lv~nK~Dl~~ 122 (167)
T 1c1y_A 113 LVGNKCDLED 122 (167)
T ss_dssp EEEECTTCGG
T ss_pred EEEECccccc
Confidence 9999999864
No 127
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.26 E-value=6.5e-11 Score=110.52 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=39.0
Q ss_pred CCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHH
Q 016165 321 CDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMR 370 (394)
Q Consensus 321 ~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~ 370 (394)
+|++|+++|+...+.......+++.+.. +.|+++|+||+|+....+...
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~ 164 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQ 164 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHH
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHH
Confidence 7789998877654566777888888877 789999999999987665543
No 128
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.26 E-value=9.5e-12 Score=120.88 Aligned_cols=121 Identities=23% Similarity=0.298 Sum_probs=70.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|+||||||||+|+|+|.. ..+++.+.+|++... ..+.+.|.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~---~~~~~~~~~T~d~~~-----------------~~i~~~g~-------------- 226 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT---QKVDTKLFTTMSPKR-----------------YAIPINNR-------------- 226 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--------------CCSCE-----------------EEEEETTE--------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ccccCCcccccCCEE-----------------EEEEECCE--------------
Confidence 69999999999999999999987 555555655543210 00111121
Q ss_pred cCCccccccceeecCCCCCch-hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCC--chHH---HHHHHHHHhcCCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD--ISDE---FKRVITSLRGHDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsG-e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~--~~~~---~~~~l~~l~~~~~~ 352 (394)
.+.++||+|+... ....++. |. -+...+..+|++++++|++... .... +.++++.+...+.|
T Consensus 227 --------~v~l~DT~G~i~~lp~~lve~---f~-~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p 294 (364)
T 2qtf_A 227 --------KIMLVDTVGFIRGIPPQIVDA---FF-VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP 294 (364)
T ss_dssp --------EEEEEECCCBCSSCCGGGHHH---HH-HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred --------EEEEEeCCCchhcCCHHHHHH---HH-HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC
Confidence 5678999998551 1111110 10 2234578999999999987622 1111 23455555445789
Q ss_pred EEEEEecCCccCH
Q 016165 353 IRVVLNKADQVDT 365 (394)
Q Consensus 353 viiv~nK~Dl~~~ 365 (394)
+++|.||+|+.+.
T Consensus 295 ~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 295 ILVTLNKIDKING 307 (364)
T ss_dssp EEEEEECGGGCCS
T ss_pred EEEEEECCCCCCc
Confidence 9999999998653
No 129
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=108.45 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=73.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||+|.+++... .....|.++.+..... +.+.+. .
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~~----~--------- 71 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQG---DSAHEPENPEDTYERR-----------------IMVDKE----E--------- 71 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEEC---CGGGTTTSCTTEEEEE-----------------EEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhccC---CccCCCCcccceEEEE-----------------EEECCE----E---------
Confidence 899999999999999999987662 2222333333221100 000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
-.+.++||+|... .+-. +...++.++|++|+++|.........+..++..+.. .+.|++
T Consensus 72 -------~~l~i~Dt~g~~~---~~~~-------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 134 (195)
T 3cbq_A 72 -------VTLVVYDIWEQGD---AGGW-------LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 134 (195)
T ss_dssp -------EEEEEECCCCCSG---GGHH-------HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE
T ss_pred -------EEEEEEecCCCcc---chhh-------hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1567899999842 1111 445678899999999999862222334455555543 368999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 135 lv~nK~Dl~~ 144 (195)
T 3cbq_A 135 LVGNKSDLAR 144 (195)
T ss_dssp EEEECTTCTT
T ss_pred EEeechhccc
Confidence 9999999854
No 130
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.25 E-value=1.8e-11 Score=104.40 Aligned_cols=115 Identities=20% Similarity=0.312 Sum_probs=73.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....|..+...... .+.+.+. .
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~----~--------- 51 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDF---AENKEPTIGAAFLTQ-----------------RVTINEH----T--------- 51 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC---CTTCCCCSSEEEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEE-----------------EEEECCE----E---------
Confidence 699999999999999999998773 222233333211100 0000000 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vii 355 (394)
..+.++||||... |..+...++.++|++++++|+...........++..+. ..+.|+++
T Consensus 52 -------~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 113 (170)
T 1ek0_A 52 -------VKFEIWDTAGQER-----------FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIAL 113 (170)
T ss_dssp -------EEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -------EEEEEEECCCChh-----------hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 1678999999732 11245677899999999999987222333444555543 24789999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 114 v~nK~Dl~~ 122 (170)
T 1ek0_A 114 VGNKIDXLQ 122 (170)
T ss_dssp EEECGGGGG
T ss_pred EEECCCccc
Confidence 999999854
No 131
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.25 E-value=4.9e-11 Score=105.24 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=46.9
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHH---HHHhhcCCEEEEEeCCCCC--CchHHHHHHHHHHh--cCCCeEEEEEec
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVT---SWFAAKCDLILLLFDPHKL--DISDEFKRVITSLR--GHDDKIRVVLNK 359 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~ia---ral~~~~dllLl~lD~~~~--~~~~~~~~~l~~l~--~~~~~viiv~nK 359 (394)
.+.++||+|...- .+ +. ..++.++|++|+++|.... .....+..++..+. ..+.|+++|.||
T Consensus 70 ~l~i~Dt~G~~~~--~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK 138 (196)
T 3llu_A 70 NFQIWDFPGQMDF--FD---------PTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138 (196)
T ss_dssp CEEEEECCSSCCT--TC---------TTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred EEEEEECCCCHHH--Hh---------hhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 6789999997430 01 22 4568899999999999872 11233344555542 347899999999
Q ss_pred CCccCH
Q 016165 360 ADQVDT 365 (394)
Q Consensus 360 ~Dl~~~ 365 (394)
+|+.+.
T Consensus 139 ~Dl~~~ 144 (196)
T 3llu_A 139 VDGLSD 144 (196)
T ss_dssp GGGSCH
T ss_pred cccCch
Confidence 998764
No 132
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.25 E-value=6.6e-12 Score=111.82 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=72.9
Q ss_pred ccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhh
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (394)
...|+++|++|+|||||+|.|++... .....|+.+...... .+.+.+. .
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~----~------- 68 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIK-----------------TVDINGK----K------- 68 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCC---CCSSSCCCSCCEEEE-----------------EEEETTE----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC---CcccCCcccceEEEE-----------------EEEECCE----E-------
Confidence 34899999999999999999998763 223333333322110 0001110 0
Q ss_pred hhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeE
Q 016165 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKI 353 (394)
Q Consensus 277 ~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~v 353 (394)
..+.++||||... . ..+...++.++|++|+++|+........+..++..+. ..+.|+
T Consensus 69 ---------~~~~l~Dt~G~~~---~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 128 (213)
T 3cph_A 69 ---------VKLQLWDTAGQER---F--------RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQL 128 (213)
T ss_dssp ---------EEEEEECCTTGGG---G--------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEE
T ss_pred ---------EEEEEEeCCCcHH---H--------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 1678999999632 1 1134567899999999999986221222234444443 346899
Q ss_pred EEEEecCCcc
Q 016165 354 RVVLNKADQV 363 (394)
Q Consensus 354 iiv~nK~Dl~ 363 (394)
++|.||+|+.
T Consensus 129 ilv~nK~Dl~ 138 (213)
T 3cph_A 129 LLVGNKSDME 138 (213)
T ss_dssp EEEEECTTCS
T ss_pred EEEEECCCCc
Confidence 9999999984
No 133
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.24 E-value=2.6e-11 Score=105.67 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=72.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.+++... ... .|+.+..... +.+.+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~--~~t~~~~~~~-------------------~~~~~-------------- 61 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGEDV--DTI--SPTLGFNIKT-------------------LEHRG-------------- 61 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCC--SSC--CCCSSEEEEE-------------------EEETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--Ccc--cccCccceEE-------------------EEECC--------------
Confidence 3899999999999999999998652 111 2222111000 00011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++||||... -+ .+.+.++.++|++++++|+...........++..+.+ .+.|+
T Consensus 62 --------~~~~~~Dt~G~~~---~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 122 (186)
T 1ksh_A 62 --------FKLNIWDVGGQKS---LR--------SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122 (186)
T ss_dssp --------EEEEEEEECCSHH---HH--------TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE
T ss_pred --------EEEEEEECCCCHh---HH--------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcE
Confidence 1778999999832 11 1223457899999999999873334444555555543 36899
Q ss_pred EEEEecCCccCH
Q 016165 354 RVVLNKADQVDT 365 (394)
Q Consensus 354 iiv~nK~Dl~~~ 365 (394)
++|.||+|+.+.
T Consensus 123 ilv~nK~Dl~~~ 134 (186)
T 1ksh_A 123 LIFANKQDLPGA 134 (186)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEeCccCCCC
Confidence 999999998654
No 134
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.24 E-value=6.5e-13 Score=141.90 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=74.3
Q ss_pred cccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhcC---CEEEE-----EeCCCCCCchHHHHHHHHHHhc
Q 016165 283 SLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC---DLILL-----LFDPHKLDISDEFKRVITSLRG 348 (394)
Q Consensus 283 ~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~---dllLl-----~lD~~~~~~~~~~~~~l~~l~~ 348 (394)
++++.+++.+ .++.+| ||+||+. +|++++.+| +++|+ ++|+.. ...+.++|+.+.+
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~-------LAraL~~~p~~p~lLILDEPTsGLD~~~---~~~l~~lL~~L~~ 914 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVK-------LASELQKRSTGRTVYILDEPTTGLHFDD---IRKLLNVINGLVD 914 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHH-------HHHHHSSCCCSSEEEEEESTTTTCCHHH---HHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHH-------HHHHHHhCCCCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHh
Confidence 4556666643 577788 9999999 999999865 89988 777765 7788899999887
Q ss_pred CCCeEEEEEecCCccCHHHHHHHHhHhhh------ccceeeecCcccee
Q 016165 349 HDDKIRVVLNKADQVDTQQLMRVYGALMW------SLGKVLNTPEVVRV 391 (394)
Q Consensus 349 ~~~~viiv~nK~Dl~~~~~~~~~~~~~~~------~~G~i~~~~~~~~v 391 (394)
.|.+||+|. |+.+.+...|+++.+ +.|+++..+.+.++
T Consensus 915 ~G~TVIvis-----Hdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el 958 (993)
T 2ygr_A 915 KGNTVIVIE-----HNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDV 958 (993)
T ss_dssp TTCEEEEEC-----CCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHH
T ss_pred CCCEEEEEc-----CCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHH
Confidence 888888888 777776444999999 68999987766554
No 135
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.24 E-value=1.1e-11 Score=106.87 Aligned_cols=116 Identities=23% Similarity=0.319 Sum_probs=73.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.+++... .....|..+....... +.+.+. .
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~~----~--------- 62 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDSF---DNTYQATIGIDFLSKT-----------------MYLEDR----T--------- 62 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCCSEEEEEEE-----------------EEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeeEEEEEE-----------------EEECCe----E---------
Confidence 799999999999999999998763 3333344433221100 000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vii 355 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+. ..+.|+++
T Consensus 63 -------~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 124 (179)
T 2y8e_A 63 -------VRLQLWDTAGQER-----------FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIML 124 (179)
T ss_dssp -------EEEEEEEECCSGG-----------GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEE
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 1578999999632 11134567889999999999976222223334444443 34789999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 125 v~nK~Dl~~~ 134 (179)
T 2y8e_A 125 VGNKTDLSDK 134 (179)
T ss_dssp EEECGGGGGG
T ss_pred EEECCccccc
Confidence 9999998643
No 136
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.24 E-value=2.3e-11 Score=105.58 Aligned_cols=114 Identities=13% Similarity=0.204 Sum_probs=71.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|+|||||+|.+++... .....|.++...... ....+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~~---~~~~~~t~~~~~~~~------------------~~~~~~-------------- 64 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKIF---VDDYDPTIEDSYLKH------------------TEIDNQ-------------- 64 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEE------------------EEETTE--------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCCCCCccceeEEE------------------EEeCCc--------------
Confidence 899999999999999999998762 222233333211100 000010
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH----hcCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l----~~~~~~vi 354 (394)
...+.++||||... - ..+...++.++|++++++|+...........++..+ ...+.|++
T Consensus 65 ------~~~l~i~Dt~G~~~---~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 127 (183)
T 3kkq_A 65 ------WAILDVLDTAGQEE---F--------SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127 (183)
T ss_dssp ------EEEEEEEECCSCGG---G--------CSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE
T ss_pred ------EEEEEEEECCCchh---h--------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 01467899999732 1 114456788999999999998722122233343333 23578999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 128 lv~nK~Dl~~ 137 (183)
T 3kkq_A 128 LVANKVDLMH 137 (183)
T ss_dssp EEEECTTCST
T ss_pred EEEECCCchh
Confidence 9999999864
No 137
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.24 E-value=2.3e-11 Score=106.41 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=72.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|++... .....|..+...... .+.+.+. .
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~----~--------- 68 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGRF---PDRTEATIGVDFRER-----------------AVDIDGE----R--------- 68 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC---CSSCCCCCSCCEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCCCcceEEEEE-----------------EEEECCE----E---------
Confidence 899999999999999999998763 222222222111000 0000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
..+.++||||. ++-+.. +...++.++|++|+++|+........+..++..+. ..+.|++
T Consensus 69 -------~~~~l~Dt~G~---~~~~~~-------~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii 131 (189)
T 1z06_A 69 -------IKIQLWDTAGQ---ERFRKS-------MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI 131 (189)
T ss_dssp -------EEEEEEECCCS---HHHHTT-------THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEE
T ss_pred -------EEEEEEECCCc---hhhhhh-------hhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 16789999997 222212 55677899999999999986221223333444332 3478999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 132 lv~nK~Dl~~ 141 (189)
T 1z06_A 132 LVGNKCDLRS 141 (189)
T ss_dssp EEEECTTCGG
T ss_pred EEEECccccc
Confidence 9999999854
No 138
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.24 E-value=2.6e-11 Score=105.82 Aligned_cols=123 Identities=23% Similarity=0.207 Sum_probs=74.4
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEE---EEecCcccccCCceeeeccCCCCCcccccccccchh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVV---VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSK 274 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 274 (394)
..|+++|++|+|||||+|.|++... .....|..+.... .+... +. .-.......
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~------~~--------~~~~~~~~~------ 68 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKF---NSKFITTVGIDFREKRVVYRA------NG--------PDGAVGRGQ------ 68 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC---CCSCCCCCSEEEEEEEEEECT------TS--------CCCSSCCCE------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC---CcCcccccceeeeeEEEEEec------CC--------cccccccCc------
Confidence 4899999999999999999998763 2122222222111 00000 00 000000000
Q ss_pred hhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CC
Q 016165 275 FECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HD 350 (394)
Q Consensus 275 ~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~ 350 (394)
-..+.++||||... |..+...++.++|++|+++|+...........++..+.. .+
T Consensus 69 ----------~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 127 (195)
T 3bc1_A 69 ----------RIHLQLWDTAGLER-----------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127 (195)
T ss_dssp ----------EEEEEEEEECCSGG-----------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSS
T ss_pred ----------EEEEEEEeCCCcHH-----------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 02678999999832 222556778999999999999872222333445555443 47
Q ss_pred CeEEEEEecCCccC
Q 016165 351 DKIRVVLNKADQVD 364 (394)
Q Consensus 351 ~~viiv~nK~Dl~~ 364 (394)
.|+++|.||+|+.+
T Consensus 128 ~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 128 PDIVLCGNKSDLED 141 (195)
T ss_dssp CCEEEEEECTTCGG
T ss_pred CCEEEEEECccccc
Confidence 89999999999864
No 139
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.24 E-value=4.2e-11 Score=101.43 Aligned_cols=114 Identities=16% Similarity=0.261 Sum_probs=71.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....+.++..... .+.+.+. .
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~------------------~~~~~~~----~--------- 50 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF---VDECDPTIEDSYRK------------------QVVIDGE----T--------- 50 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEE------------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC---ccccCCccceEEEE------------------EEEECCE----E---------
Confidence 699999999999999999998763 11112222111100 0000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... |..+...++.++|.+++++|+...........++..+.. .+.|++
T Consensus 51 -------~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i 112 (166)
T 2ce2_X 51 -------CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112 (166)
T ss_dssp -------EEEEEEECCCCSS-----------CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE
T ss_pred -------EEEEEEECCCchh-----------hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 1567899999743 112455678899999999999762222333444444432 378999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 113 iv~nK~Dl~~ 122 (166)
T 2ce2_X 113 LVGNKSDLAA 122 (166)
T ss_dssp EEEECTTCSC
T ss_pred EEEEchhhhh
Confidence 9999999865
No 140
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.24 E-value=3.4e-11 Score=126.46 Aligned_cols=153 Identities=22% Similarity=0.346 Sum_probs=90.2
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCC--------ccccccc
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFS--------GLTTFGT 269 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~ 269 (394)
..|+|+|.+|+|||||+|+|+|... .+++..|+|.......++.+.. .++......... +......
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~--~~v~~~p~T~~~~~i~~g~~~~----~t~~~~~g~~~~~~~~~~i~~~~~i~~ 143 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENL--LPSDVNPCTAVLTVLRYGPEKK----VTIHFNDGKSPQQLDFQNFKYKYTIDP 143 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSC--SCCCCCTTTCCCEEEEECSSCE----EEEEESSSCCCCEEEHHHHHHHSCCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--CCCCCCCCccceEEEEeCCCCe----EEEEEcCCCcccccChhhhhhhhcCCH
Confidence 3899999999999999999999987 7888888886554444443211 111110000000 0000000
Q ss_pred c-----------cchhh--hhhcCCcccc-ccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCc
Q 016165 270 A-----------FLSKF--ECSQMPHSLL-EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDI 335 (394)
Q Consensus 270 ~-----------~~~~~--~~~~~~~~~l-~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~ 335 (394)
. ..... .....+...+ ..+.++||||+.+... ... ++..++.++|++|+++|+... .
T Consensus 144 ~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-~~~-------~~~~~i~~aD~vL~Vvda~~~-~ 214 (695)
T 2j69_A 144 AEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-RNE-------LSLGYVNNCHAILFVMRASQP-C 214 (695)
T ss_dssp HHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-CHH-------HHTHHHHSSSEEEEEEETTST-T
T ss_pred HHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-HHH-------HHHHHHHhCCEEEEEEeCCCc-c
Confidence 0 00000 0001112222 3688999999866221 222 667788999999999999763 2
Q ss_pred hHHHHHHHH-HHhcCCCeEEEEEecCCccCH
Q 016165 336 SDEFKRVIT-SLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 336 ~~~~~~~l~-~l~~~~~~viiv~nK~Dl~~~ 365 (394)
.....+++. .+...+.|+++|+||+|+.+.
T Consensus 215 s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 215 TLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp CHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred chhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 333444443 455557899999999998643
No 141
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.24 E-value=9.7e-12 Score=107.36 Aligned_cols=117 Identities=16% Similarity=0.201 Sum_probs=73.1
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.|++... .....|+.+...... .+.+.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~------------- 56 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTF---SGSYITTIGVDFKIR-----------------TVEINGE------------- 56 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC------CCTTTBSEEEEEE-----------------EEEETTE-------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCccCCCceeEEEEE-----------------EEEECCE-------------
Confidence 3899999999999999999998773 333344444322110 0001110
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc--CCCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~--~~~~vii 355 (394)
...+.++||||... .+ . +...++.++|++|+++|+...........++..+.+ .+.|+++
T Consensus 57 -------~~~~~i~Dt~G~~~---~~-~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~il 118 (181)
T 3tw8_B 57 -------KVKLQIWDTAGQER---FR-T-------ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 118 (181)
T ss_dssp -------EEEEEEEEETTGGG---CS-S-------CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred -------EEEEEEEcCCCchh---hh-h-------hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 01678999999632 10 0 223457899999999999873223333445555543 3579999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 119 v~nK~Dl~~~ 128 (181)
T 3tw8_B 119 VGNKNDDPER 128 (181)
T ss_dssp EEECTTCGGG
T ss_pred EEECCCCchh
Confidence 9999998643
No 142
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.24 E-value=3.8e-11 Score=104.16 Aligned_cols=114 Identities=17% Similarity=0.236 Sum_probs=72.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|++... .....+.++..... .+.+.+. .
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 65 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDEF---VEDYEPTKADSYRK------------------KVVLDGE----E--------- 65 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC---CCSCCTTCCEEEEE------------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC---CCcCCCccceEEEE------------------EEEECCE----E---------
Confidence 899999999999999999998763 11112222211100 0000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
..+.++||||... |..+.+.++.++|++++++|+...........++..+. ..+.|++
T Consensus 66 -------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 127 (187)
T 2a9k_A 66 -------VQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127 (187)
T ss_dssp -------EEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEE
T ss_pred -------EEEEEEECCCCcc-----------cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1678999999743 12255677899999999999986222223334444332 2378999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 128 lv~nK~Dl~~ 137 (187)
T 2a9k_A 128 LVGNKSDLED 137 (187)
T ss_dssp EEEECGGGGG
T ss_pred EEEECccccc
Confidence 9999999854
No 143
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.23 E-value=3.3e-11 Score=114.42 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=51.6
Q ss_pred ccceeecCCCCCch----hhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCch-HHHHHHHHHHhcCCCeEEEEEecC
Q 016165 286 EHITLVDTPGVLSG----EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDIS-DEFKRVITSLRGHDDKIRVVLNKA 360 (394)
Q Consensus 286 ~~~~l~Dt~g~lsG----e~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~-~~~~~~l~~l~~~~~~viiv~nK~ 360 (394)
..+.++||||+... +...+.. .+...+..++.++|++++++|+...+.. .....+++.+...+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQ--QIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHH--HHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHH--HHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 36889999999751 1111110 1233677889999999999987432222 223467777777789999999999
Q ss_pred CccCH
Q 016165 361 DQVDT 365 (394)
Q Consensus 361 Dl~~~ 365 (394)
|+.+.
T Consensus 209 Dl~~~ 213 (315)
T 1jwy_B 209 DLMDK 213 (315)
T ss_dssp TSSCS
T ss_pred ccCCc
Confidence 98653
No 144
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.23 E-value=3.7e-11 Score=104.50 Aligned_cols=114 Identities=15% Similarity=0.204 Sum_probs=70.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|++... ... .+.++...... ...+.+. .
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~---~~~-~~~t~~~~~~~-----------------~~~~~~~----~--------- 51 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHF---VDE-YDPTIEDSYRK-----------------QVVIDGE----T--------- 51 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC---CCC-CCTTCCEEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCC-CCCCchheEEE-----------------EEEECCc----E---------
Confidence 799999999999999999998763 111 22222211100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... |..+...++.++|++++++|+...........++..+.. .+.|++
T Consensus 52 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 113 (189)
T 4dsu_A 52 -------CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113 (189)
T ss_dssp -------EEEEEEECCCC--------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 1567899999743 111455678899999999999862222333344444332 478999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 114 ~v~nK~Dl~~ 123 (189)
T 4dsu_A 114 LVGNKCDLPS 123 (189)
T ss_dssp EEEECTTSSS
T ss_pred EEEECccCcc
Confidence 9999999864
No 145
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.23 E-value=1.4e-11 Score=105.27 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=65.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|+|||||+|.+++... .... .+..+..... ..+.+.+. .
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~--~~~~-~~~~~~~~~~-----------------~~~~~~~~----~--------- 50 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG--DHAH-EMENSEDTYE-----------------RRIMVDKE----E--------- 50 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC---------------CEEE-----------------EEEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhccC--cccc-cCCCcCCeee-----------------EEEEECCe----E---------
Confidence 699999999999999999997663 2221 1111111110 00000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... .+-. +...++.++|++++++|+...........++..+.. .+.|++
T Consensus 51 -------~~~~i~D~~g~~~---~~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 113 (169)
T 3q85_A 51 -------VTLIVYDIWEQGD---AGGW-------LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 113 (169)
T ss_dssp -------EEEEEECCCCC------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE
T ss_pred -------EEEEEEECCCccc---cchh-------hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEE
Confidence 1567899999843 1111 233457889999999999872222233344544433 368999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 114 lv~nK~Dl~~ 123 (169)
T 3q85_A 114 LVGNKSDLAR 123 (169)
T ss_dssp EEEECTTCGG
T ss_pred EEeeCcchhh
Confidence 9999999864
No 146
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.23 E-value=3.1e-11 Score=103.95 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=72.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.|++... .....+..+...... .+.+.+ ..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~----~~-------- 63 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKF---MADCPHTIGVEFGTR-----------------IIEVSG----QK-------- 63 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC---CSSCTTSCCCCEEEE-----------------EEEETT----EE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCccceEEEEE-----------------EEEECC----eE--------
Confidence 3899999999999999999998773 111122222111000 000000 00
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH---hcCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l---~~~~~~vi 354 (394)
..+.++||||... |..+.+.++.++|++|+++|+...........++..+ ...+.|++
T Consensus 64 --------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 124 (179)
T 1z0f_A 64 --------IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 124 (179)
T ss_dssp --------EEEEEEECTTGGG-----------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEECCCChH-----------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 1678999999622 1225677889999999999998722222233444433 33578999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 125 lv~nK~Dl~~ 134 (179)
T 1z0f_A 125 LIGNKADLEA 134 (179)
T ss_dssp EEEECTTCGG
T ss_pred EEEECccccc
Confidence 9999999854
No 147
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.23 E-value=2.6e-11 Score=104.86 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=72.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.+++... .....+..+...... .+.+.+. .
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~----~--------- 60 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQF---VEFQESTIGAAFFSQ-----------------TLAVNDA----T--------- 60 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC---TTTSCCCSCCSEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---CCcCCCCceeEEEEE-----------------EEEECCE----E---------
Confidence 799999999999999999998773 211122222111000 0000000 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+.. .+.|+++
T Consensus 61 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~ 122 (181)
T 2efe_B 61 -------VKFEIWDTAGQER-----------YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122 (181)
T ss_dssp -------EEEEEEECCCSGG-----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -------EEEEEEeCCCChh-----------hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 1678999999732 111345678999999999999862222334455555543 3679999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 123 v~nK~Dl~~ 131 (181)
T 2efe_B 123 AGNKSDLLD 131 (181)
T ss_dssp EEECTTCTT
T ss_pred EEECCcccc
Confidence 999999854
No 148
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.23 E-value=5.2e-11 Score=112.08 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=51.1
Q ss_pred ccceeecCCCCCchh----hhhhhcccChHHHHHHHhhcCCEEE-EEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecC
Q 016165 286 EHITLVDTPGVLSGE----KQRTQRAYDFTGVTSWFAAKCDLIL-LLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (394)
Q Consensus 286 ~~~~l~Dt~g~lsGe----~qrv~~~~~~~~iaral~~~~dllL-l~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~ 360 (394)
..+.++||||+.+.. ...+.. .+..++..++.+++.++ +++|+...-.......+++.+...+.++++|.||+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~ 202 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEF--QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 202 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHH--HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHH--HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcc
Confidence 478899999986511 111100 12236677888888666 68898652112233467777777788999999999
Q ss_pred CccCH
Q 016165 361 DQVDT 365 (394)
Q Consensus 361 Dl~~~ 365 (394)
|+.+.
T Consensus 203 Dl~~~ 207 (299)
T 2aka_B 203 DLMDE 207 (299)
T ss_dssp GGSCT
T ss_pred ccCCC
Confidence 98654
No 149
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.23 E-value=3.4e-11 Score=106.50 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=73.8
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.|++... .....+..+...... .+.+.+ ..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~----~~-------- 56 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSF---TPAFVSTVGIDFKVK-----------------TIYRND----KR-------- 56 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCC---CSCCCCCCSEEEEEE-----------------EEEETT----EE--------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCcCCccceeEEEE-----------------EEEECC----eE--------
Confidence 4899999999999999999998773 222122222111000 000000 00
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vi 354 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+.. .+.|++
T Consensus 57 --------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 117 (203)
T 1zbd_A 57 --------IKLQIWDTAGLER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL 117 (203)
T ss_dssp --------EEEEEEEECCSGG-----------GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEE
T ss_pred --------EEEEEEECCCchh-----------hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 1678999999832 122456678999999999999872222334455555543 478999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 118 lv~nK~Dl~~ 127 (203)
T 1zbd_A 118 LVGNKCDMED 127 (203)
T ss_dssp EEEECTTCTT
T ss_pred EEEECcccCc
Confidence 9999999864
No 150
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.23 E-value=1.8e-11 Score=105.42 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=70.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....|+.+...... .+.+.+. .
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~----~--------- 55 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNKF---DTQLFHTIGVEFLNK-----------------DLEVDGH----F--------- 55 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC---CC----CCSEEEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeeeEEEE-----------------EEEECCE----E---------
Confidence 799999999999999999998763 222233333321100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---c----CCC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---G----HDD 351 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~----~~~ 351 (394)
..+.++||||... |..+...++.++|++++++|............++..+. . .+.
T Consensus 56 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (177)
T 1wms_A 56 -------VTMQIWDTAGQER-----------FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117 (177)
T ss_dssp -------EEEEEEECCCCGG-----------GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTS
T ss_pred -------EEEEEEeCCCchh-----------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCC
Confidence 1678999999732 11144456889999999999987221222233444332 2 467
Q ss_pred eEEEEEecCCcc
Q 016165 352 KIRVVLNKADQV 363 (394)
Q Consensus 352 ~viiv~nK~Dl~ 363 (394)
|+++|.||+|+.
T Consensus 118 p~i~v~nK~Dl~ 129 (177)
T 1wms_A 118 PFVILGNKIDIS 129 (177)
T ss_dssp CEEEEEECTTCS
T ss_pred cEEEEEECCccc
Confidence 999999999985
No 151
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.23 E-value=3.9e-11 Score=103.53 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=71.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|++... ... .+.+....... .+.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~~---~~~-~~~t~~~~~~~-----------------~~~~~~~-------------- 55 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSYF---VSD-YDPTIEDSYTK-----------------ICSVDGI-------------- 55 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC---CSS-CCTTCCEEEEE-----------------EEEETTE--------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC---ccc-cCCCcCceEEE-----------------EEEECCE--------------
Confidence 899999999999999999999762 222 22222211100 0000110
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH----hcCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l----~~~~~~vi 354 (394)
-..+.++||||...- ..+...++.++|++++++|............++..+ ...+.|++
T Consensus 56 ------~~~~~~~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 118 (181)
T 2fn4_A 56 ------PARLDILDTAGQEEF-----------GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118 (181)
T ss_dssp ------EEEEEEEECCCTTTT-----------SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE
T ss_pred ------EEEEEEEECCCchhh-----------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 016788999997431 113456788999999999998722223333444433 34578999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 119 lv~nK~Dl~~ 128 (181)
T 2fn4_A 119 LVGNKADLES 128 (181)
T ss_dssp EEEECGGGGG
T ss_pred EEEECccccc
Confidence 9999999865
No 152
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.23 E-value=4.6e-11 Score=105.76 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=72.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|.+|||||||+|.|++... .....|.++..... ...+.+. .
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~-------- 71 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEF---SEGYDPTVENTYSK------------------IVTLGKD----E-------- 71 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC---CSCCCCCSEEEEEE------------------EEC--------C--------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC---CCCCCCccceEEEE------------------EEEECCE----E--------
Confidence 4899999999999999999999873 22222322221110 0000000 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcC----CCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH----DDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~----~~~v 353 (394)
..+.++||||...-. . +...++.++|++|+++|+........+..++..+... +.|+
T Consensus 72 --------~~~~l~Dt~G~~~~~--~---------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 132 (201)
T 3oes_A 72 --------FHLHLVDTAGQDEYS--I---------LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV 132 (201)
T ss_dssp --------EEEEEEEECCCCTTC--C---------CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCE
T ss_pred --------EEEEEEECCCccchH--H---------HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 166899999974311 1 2234578999999999998732234445566666443 6799
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 133 ilv~nK~Dl~~ 143 (201)
T 3oes_A 133 VLVGNKADLSP 143 (201)
T ss_dssp EEEEECTTCGG
T ss_pred EEEEECccCcc
Confidence 99999999864
No 153
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.22 E-value=3.1e-11 Score=105.73 Aligned_cols=113 Identities=21% Similarity=0.164 Sum_probs=71.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|.+|||||||+|.|++... ......|+.+.... .+.+.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~t~~~~~~-------------------~~~~~~--------------- 66 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSNA--QSQNILPTIGFSIE-------------------KFKSSS--------------- 66 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGGG--CCSSCCCCSSEEEE-------------------EEECSS---------------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCcCCccceeEE-------------------EEEECC---------------
Confidence 899999999999999999998762 11111222221100 001111
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc------CCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~------~~~~ 352 (394)
..+.++||||...- .. +.+.++.++|++|+++|+...........++..+.. .+.|
T Consensus 67 -------~~~~l~Dt~G~~~~--~~---------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p 128 (190)
T 2h57_A 67 -------LSFTVFDMSGQGRY--RN---------LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP 128 (190)
T ss_dssp -------CEEEEEEECCSTTT--GG---------GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC
T ss_pred -------EEEEEEECCCCHHH--HH---------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe
Confidence 17789999997431 11 223457899999999999862222333344444432 4679
Q ss_pred EEEEEecCCccCH
Q 016165 353 IRVVLNKADQVDT 365 (394)
Q Consensus 353 viiv~nK~Dl~~~ 365 (394)
+++|.||+|+.+.
T Consensus 129 iilv~nK~Dl~~~ 141 (190)
T 2h57_A 129 ILFFANKMDLRDA 141 (190)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEeCcCcccC
Confidence 9999999999653
No 154
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.22 E-value=2.8e-11 Score=103.19 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=71.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.|++... ... ..+..+...... . +.+.+ ..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~--~~~-~~~~~~~~~~~~---------------~--~~~~~----~~--------- 54 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQF--HEF-QESTIGAAFLTQ---------------T--VCLDD----TT--------- 54 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC--CTT-CCCCSSEEEEEE---------------E--EEETT----EE---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCC-CCCccceEEEEE---------------E--EEECC----EE---------
Confidence 799999999999999999998763 111 112221111000 0 00000 00
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+.. .+.|+++
T Consensus 55 -------~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iil 116 (170)
T 1r2q_A 55 -------VKFEIWDTAGQER-----------YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 116 (170)
T ss_dssp -------EEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -------EEEEEEeCCCcHH-----------hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 1678999999732 112456778999999999999862222333445555432 3678999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 117 v~nK~Dl~~ 125 (170)
T 1r2q_A 117 SGNKADLAN 125 (170)
T ss_dssp EEECGGGGG
T ss_pred EEECccCcc
Confidence 999999854
No 155
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.22 E-value=4.1e-11 Score=105.28 Aligned_cols=116 Identities=17% Similarity=0.241 Sum_probs=73.7
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.|++.... ......++.+.....+. +....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~-------------- 71 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFD-HNISPTIGASFMTKTVP-----------------CGNEL-------------- 71 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCC-TTCCCCSSEEEEEEEEE-----------------CSSSE--------------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCCcceeEEEEEEE-----------------eCCEE--------------
Confidence 38999999999999999999987731 11222222211111000 00001
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vi 354 (394)
..+.++||||... . ..+...++.++|++|+++|+........+..++..+.+ .+.|++
T Consensus 72 --------~~~~i~Dt~G~~~---~--------~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 132 (192)
T 2fg5_A 72 --------HKFLIWDTAGQER---F--------HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132 (192)
T ss_dssp --------EEEEEEEECCSGG---G--------GGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEcCCCchh---h--------HhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 1678999999732 1 11345678999999999999873333444455555543 378999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 133 iv~NK~Dl~~ 142 (192)
T 2fg5_A 133 IAGNKCDLSD 142 (192)
T ss_dssp EEEECGGGGG
T ss_pred EEEECccccc
Confidence 9999999864
No 156
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.22 E-value=1.1e-11 Score=107.06 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=71.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....|+.+.+.... .+.+.+. .
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~---~---------- 54 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQETF---GKQYKQTIGLDFFLR-----------------RITLPGN---L---------- 54 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGGT---THHHHHTTTSSEEEE-----------------EEEETTT---E----------
T ss_pred EEEEECcCCCCHHHHHHHHHhCcC---CCCCCCceeEEEEEE-----------------EEEeCCC---C----------
Confidence 799999999999999999998763 111122222211100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc-----CCCe-
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-----HDDK- 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~-----~~~~- 352 (394)
-..+.++||||.... ..+...++.++|++|+++|+...........++..+.. .+.|
T Consensus 55 ------~~~~~~~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~ 117 (178)
T 2hxs_A 55 ------NVTLQIWDIGGQTIG-----------GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117 (178)
T ss_dssp ------EEEEEEEECTTCCTT-----------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCE
T ss_pred ------EEEEEEEECCCCccc-----------cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCe
Confidence 016789999997431 11456678999999999999872222223344444433 2445
Q ss_pred EEEEEecCCccC
Q 016165 353 IRVVLNKADQVD 364 (394)
Q Consensus 353 viiv~nK~Dl~~ 364 (394)
+++|.||+|+.+
T Consensus 118 iilv~nK~Dl~~ 129 (178)
T 2hxs_A 118 VALVGNKIDLEH 129 (178)
T ss_dssp EEEEEECGGGGG
T ss_pred EEEEEEcccccc
Confidence 899999999864
No 157
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.22 E-value=2.4e-11 Score=107.76 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=71.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.+.+... .....|+.+.+... ..+.+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~-----------------~~~~~~~~------------- 76 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAF---SERQGSTIGVDFTM-----------------KTLEIQGK------------- 76 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------CEEE-----------------EEEEETTE-------------
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCC---CCCCCCCcceEEEE-----------------EEEEECCE-------------
Confidence 3899999999999999999998763 11112222211100 00000110
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vi 354 (394)
...+.++||||... |..+...++.++|++|+++|+...........++..+.. .+.|++
T Consensus 77 -------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pii 138 (201)
T 2hup_A 77 -------RVKLQIWDTAGQER-----------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL 138 (201)
T ss_dssp -------EEEEEEECCTTCGG-----------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred -------EEEEEEEECCCcHh-----------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 01678999999732 222567788999999999999762222233445555543 468999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 139 lv~NK~Dl~~ 148 (201)
T 2hup_A 139 LIGNKSDLSE 148 (201)
T ss_dssp EEEECTTCGG
T ss_pred EEEECCcccc
Confidence 9999999864
No 158
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.22 E-value=1.4e-11 Score=105.21 Aligned_cols=114 Identities=16% Similarity=0.235 Sum_probs=69.1
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.+++... .....|+.+...... .+.+.+. .
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~----~--------- 51 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIK-----------------TVDINGK----K--------- 51 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC---CC-------CCEEEE-----------------EEESSSC----E---------
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC---CCCCCCccceeEEEE-----------------EEEECCE----E---------
Confidence 799999999999999999998773 222233333221100 0001110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vii 355 (394)
..+.++||||... . ..+...++.++|++|+++|+...........++..+. ..+.|+++
T Consensus 52 -------~~~~l~D~~G~~~---~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 113 (170)
T 1g16_A 52 -------VKLQIWDTAGQER---F--------RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 113 (170)
T ss_dssp -------EEEEEECCTTGGG---T--------SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred -------EEEEEEeCCCChh---h--------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 1578899999632 1 0134567899999999999986221222334444443 34789999
Q ss_pred EEecCCcc
Q 016165 356 VLNKADQV 363 (394)
Q Consensus 356 v~nK~Dl~ 363 (394)
|.||+|+.
T Consensus 114 v~nK~Dl~ 121 (170)
T 1g16_A 114 VGNKSDME 121 (170)
T ss_dssp EEECTTCT
T ss_pred EEECccCC
Confidence 99999984
No 159
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.22 E-value=5.4e-11 Score=105.15 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=72.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|.+... .....|.++..... .+.+.+. .
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 61 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEF---VEDYEPTKADSYRK------------------KVVLDGE----E--------- 61 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC---CTTCCTTCCEEEEE------------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCCCCccceEEEE------------------EEEECCE----E---------
Confidence 899999999999999999998763 21212222221110 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... |..+...++.++|++++++|+...........++..+.. .+.|++
T Consensus 62 -------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 123 (206)
T 2bov_A 62 -------VQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123 (206)
T ss_dssp -------EEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE
T ss_pred -------EEEEEEcCCChhh-----------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1678999999743 122556778999999999999872222233344444432 378999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 124 lv~nK~Dl~~ 133 (206)
T 2bov_A 124 LVGNKSDLED 133 (206)
T ss_dssp EEEECTTCGG
T ss_pred EEEeccCccc
Confidence 9999999865
No 160
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.22 E-value=1.5e-11 Score=105.16 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=70.4
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.+++... .....|+.+..... ..+.+.+. .
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~-----------------~~~~~~~~----~-------- 54 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKF---NDKHITTLGASFLT-----------------KKLNIGGK----R-------- 54 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCC---CSSCCCCCSCEEEE-----------------EEEESSSC----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC---CcCCCCccceEEEE-----------------EEEEECCE----E--------
Confidence 3799999999999999999998763 22223333322110 00001110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vi 354 (394)
..+.++||||...- . .+...++.++|++++++|+...........++..+.. .+.|++
T Consensus 55 --------~~l~i~Dt~G~~~~--~---------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 115 (170)
T 1z08_A 55 --------VNLAIWDTAGQERF--H---------ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC 115 (170)
T ss_dssp --------EEEEEEECCCC------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEE
T ss_pred --------EEEEEEECCCcHhh--h---------hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 15678999997431 0 1223457899999999999872222333444444432 468999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 116 lv~nK~Dl~~ 125 (170)
T 1z08_A 116 IVGNKIDLEK 125 (170)
T ss_dssp EEEECGGGGG
T ss_pred EEEECccccc
Confidence 9999999865
No 161
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.22 E-value=2.6e-12 Score=127.05 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=59.2
Q ss_pred Cc-hhhhhhhcccChHHHHHHHhhcC--CEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHH
Q 016165 297 LS-GEKQRTQRAYDFTGVTSWFAAKC--DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQL 368 (394)
Q Consensus 297 ls-Ge~qrv~~~~~~~~iaral~~~~--dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~ 368 (394)
+| ||+||+. +|++++.+| +++|+ .+|+.. ...+.++|+.+. ++..||+|+ |+++.+
T Consensus 296 lSgGe~qrl~-------lA~~l~~~~~~~~LlLDEpt~~LD~~~---~~~l~~~L~~l~-~~~~vi~it-----H~~~~~ 359 (415)
T 4aby_A 296 ASGGELSRVM-------LAVSTVLGADTPSVVFDEVDAGIGGAA---AIAVAEQLSRLA-DTRQVLVVT-----HLAQIA 359 (415)
T ss_dssp SCHHHHHHHH-------HHHHHHHCCSSSEEEESSTTTTCCHHH---HHHHHHHHHHHT-TTSEEEEEC-----SCHHHH
T ss_pred cCHhHHHHHH-------HHHHHHhCCCCCEEEEECCCCCCCHHH---HHHHHHHHHHHh-CCCEEEEEe-----CcHHHH
Confidence 68 9999999 999999999 99998 777765 777888888887 478888888 777655
Q ss_pred HHHHhHhhh----ccceeee
Q 016165 369 MRVYGALMW----SLGKVLN 384 (394)
Q Consensus 369 ~~~~~~~~~----~~G~i~~ 384 (394)
..+++++++ ++|+++.
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~ 379 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVS 379 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEE
T ss_pred hhcCeEEEEEEeccCCceEE
Confidence 434899999 8888764
No 162
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.22 E-value=2.3e-11 Score=105.77 Aligned_cols=116 Identities=17% Similarity=0.198 Sum_probs=73.3
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.+++... .....|..+...... .+.+.+. .
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~----~-------- 58 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKF---KDDSNHTIGVEFGSK-----------------IINVGGK----Y-------- 58 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC---CTTCCCCSEEEEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCccceEEEEE-----------------EEEECCE----E--------
Confidence 4899999999999999999998773 222233333211100 0000110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH---hcCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l---~~~~~~vi 354 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+ ...+.|++
T Consensus 59 --------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 119 (186)
T 2bme_A 59 --------VKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII 119 (186)
T ss_dssp --------EEEEEEEECCSGG-----------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEeCCCcHH-----------HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 1678999999732 1124556789999999999998722222223344333 34578999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 120 lv~nK~Dl~~ 129 (186)
T 2bme_A 120 LCGNKKDLDA 129 (186)
T ss_dssp EEEECGGGGG
T ss_pred EEEECccccc
Confidence 9999999854
No 163
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.21 E-value=4.5e-11 Score=104.87 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=73.4
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.|++... ... ..+..+..... . .+.+.+ ..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~--~~~-~~~t~~~~~~~-------------~----~~~~~~----~~-------- 73 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEF--SHD-SRTTIGVEFST-------------R----TVMLGT----AA-------- 73 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC--CSS-CCCCSSEEEEE-------------E----EEEETT----EE--------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC--CCC-CCCccceeEEE-------------E----EEEECC----EE--------
Confidence 3899999999999999999999774 222 12222211100 0 000000 00
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vi 354 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+.. .+.|++
T Consensus 74 --------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~pii 134 (193)
T 2oil_A 74 --------VKAQIWDTAGLER-----------YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM 134 (193)
T ss_dssp --------EEEEEEEESCCCT-----------TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEE
T ss_pred --------EEEEEEeCCCchh-----------hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 1678999999843 111456678999999999999862222223455555543 367999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 135 lv~nK~Dl~~ 144 (193)
T 2oil_A 135 LVGNKSDLSQ 144 (193)
T ss_dssp EEEECGGGGG
T ss_pred EEEECCCccc
Confidence 9999999864
No 164
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.21 E-value=4.8e-11 Score=101.85 Aligned_cols=116 Identities=19% Similarity=0.312 Sum_probs=72.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.+++... .....|..+...... . ..+.+ ..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~---------------~--~~~~~----~~--------- 54 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSF---DPNINPTIGASFMTK---------------T--VQYQN----EL--------- 54 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC---CTTCCCCCSEEEEEE---------------E--EEETT----EE---------
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---CCCCCCceeEEEEEE---------------E--EEECC----eE---------
Confidence 799999999999999999999873 111122222111000 0 00000 00
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vii 355 (394)
..+.++||||... |..+...++.++|++++++|+...........++..+. ....|+++
T Consensus 55 -------~~~~~~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iil 116 (170)
T 1z0j_A 55 -------HKFLIWDTAGLER-----------FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAI 116 (170)
T ss_dssp -------EEEEEEEECCSGG-----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEE
T ss_pred -------EEEEEEcCCCchh-----------hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 1678999999832 11144567899999999999987222233344555443 34678999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 117 v~nK~Dl~~~ 126 (170)
T 1z0j_A 117 AGNKCDLTDV 126 (170)
T ss_dssp EEECTTCGGG
T ss_pred EEECCccccc
Confidence 9999998653
No 165
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.21 E-value=2.1e-11 Score=103.94 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=72.1
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|++... .....|+.+.+.... .+.+.+. .
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~----~--------- 53 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF---TKDYKKTIGVDFLER-----------------QIQVNDE----D--------- 53 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC---CCCSSCCCSSSEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---CCCCCCceEEEEEEE-----------------EEEECCE----E---------
Confidence 799999999999999999998763 222223322211100 0000000 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc--CCCeEEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRVV 356 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~--~~~~viiv 356 (394)
..+.++||||... |..+.+.++.++|++++++|+...........++..+.. .+.|+++|
T Consensus 54 -------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv 115 (168)
T 1z2a_A 54 -------VRLMLWDTAGQEE-----------FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALV 115 (168)
T ss_dssp -------EEEEEECCTTGGG-----------TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEE
T ss_pred -------EEEEEEcCCCcHh-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1678999999632 011345678999999999999862222233344544433 37899999
Q ss_pred EecCCccC
Q 016165 357 LNKADQVD 364 (394)
Q Consensus 357 ~nK~Dl~~ 364 (394)
.||+|+.+
T Consensus 116 ~nK~Dl~~ 123 (168)
T 1z2a_A 116 QNKIDLLD 123 (168)
T ss_dssp EECGGGGG
T ss_pred EECcccCc
Confidence 99999865
No 166
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.21 E-value=2e-11 Score=112.86 Aligned_cols=121 Identities=16% Similarity=0.200 Sum_probs=70.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcc-cceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT-TDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~-t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.|+|+|++|||||||+|.|+|... ...+..|. +++...... ..+.+
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~~--~~~~~~~~~~t~~~~~~~-----------------~~~~~-------------- 70 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQA--FESKLGSQTLTKTCSKSQ-----------------GSWGN-------------- 70 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSCC--SCCCTTSCCCCCSCEEEE-----------------EEETT--------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCceeeeeEEEE-----------------EEeCC--------------
Confidence 899999999999999999999874 33333333 333211000 00111
Q ss_pred hcCCccccccceeecCCCCCc--hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHH---HHHHHHhcC--C
Q 016165 278 SQMPHSLLEHITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK---RVITSLRGH--D 350 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~---~~l~~l~~~--~ 350 (394)
..+.++||||+.+ ++..+..+. +...+...+..+|++|+++|+.. ...... +.+..+... .
T Consensus 71 --------~~i~iiDTpG~~~~~~~~~~~~~~--i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~ 138 (260)
T 2xtp_A 71 --------REIVIIDTPDMFSWKDHCEALYKE--VQRCYLLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAM 138 (260)
T ss_dssp --------EEEEEEECCGGGGSSCCCHHHHHH--HHHHHHHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGG
T ss_pred --------CEEEEEECcCCCCCCCCHHHHHHH--HHHHHHhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhh
Confidence 1678999999866 221111100 01133446789999999999975 233333 334443221 3
Q ss_pred CeEEEEEe-cCCccC
Q 016165 351 DKIRVVLN-KADQVD 364 (394)
Q Consensus 351 ~~viiv~n-K~Dl~~ 364 (394)
.++++++| |+|+..
T Consensus 139 ~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 139 GHTIVLFTHKEDLNG 153 (260)
T ss_dssp GGEEEEEECGGGGTT
T ss_pred ccEEEEEEcccccCC
Confidence 45555555 999864
No 167
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=6e-11 Score=104.47 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=72.3
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.+++... .....|..+..... .+.+.+. .
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~-------- 75 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRF---IWEYDPTLESTYRH------------------QATIDDE----V-------- 75 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEE------------------EEEETTE----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CcccCCCCCceEEE------------------EEEECCE----E--------
Confidence 3899999999999999999999763 22222222211100 0000010 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~v 353 (394)
..+.++||||... .. +...++.++|++|+++|+...........++..+. ..+.|+
T Consensus 76 --------~~~~l~Dt~G~~~-----~~-------~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi 135 (196)
T 2atv_A 76 --------VSMEILDTAGQED-----TI-------QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL 135 (196)
T ss_dssp --------EEEEEEECCCCCC-----CH-------HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE
T ss_pred --------EEEEEEECCCCCc-----cc-------chhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE
Confidence 1678999999854 11 45677899999999999986222222333333332 247899
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 136 ilv~NK~Dl~~ 146 (196)
T 2atv_A 136 ILVGNKADLDH 146 (196)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEECccccc
Confidence 99999999865
No 168
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.21 E-value=4.9e-11 Score=105.01 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=71.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.+++... . ...|+.+.... .+.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~---~-~~~~t~~~~~~-------------------~~~~~~-------------- 72 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEI---V-TTIPTIGFNVE-------------------TVEYKN-------------- 72 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCC---E-EEEEETTEEEE-------------------EEEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCc---c-ccCCcCceeEE-------------------EEEECC--------------
Confidence 3899999999999999999987652 1 11221111000 000111
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++||||... |..+.+.++.++|++|+++|+...........++..+.. .+.|+
T Consensus 73 --------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~pi 133 (192)
T 2b6h_A 73 --------ICFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL 133 (192)
T ss_dssp --------EEEEEEECC----------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE
T ss_pred --------EEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeE
Confidence 1678999999832 111445678999999999999873333445556665543 37899
Q ss_pred EEEEecCCccCH
Q 016165 354 RVVLNKADQVDT 365 (394)
Q Consensus 354 iiv~nK~Dl~~~ 365 (394)
++|.||+|+.+.
T Consensus 134 ilv~NK~Dl~~~ 145 (192)
T 2b6h_A 134 LVFANKQDMPNA 145 (192)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECCCCCCC
Confidence 999999998653
No 169
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.21 E-value=3.3e-11 Score=104.53 Aligned_cols=111 Identities=18% Similarity=0.201 Sum_probs=69.4
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.+++... ....+..+..... +.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~--~~~~~t~~~~~~~---------------------~~~~~-------------- 61 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEV--VTTKPTIGFNVET---------------------LSYKN-------------- 61 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEE--EEECSSTTCCEEE---------------------EEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCc--CccCCcCccceEE---------------------EEECC--------------
Confidence 4899999999999999999986552 1111111000000 00011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++||||...-. . +...++.++|++++++|+...........++..+.. .+.|+
T Consensus 62 --------~~~~i~Dt~G~~~~~--~---------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 122 (183)
T 1moz_A 62 --------LKLNVWDLGGQTSIR--P---------YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAAL 122 (183)
T ss_dssp --------EEEEEEEEC----CC--T---------TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEE
T ss_pred --------EEEEEEECCCCHhHH--H---------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeE
Confidence 277899999984310 0 223457899999999999764434555566666643 46799
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 123 ilv~nK~Dl~~ 133 (183)
T 1moz_A 123 LVFANKQDQPG 133 (183)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECCCCCC
Confidence 99999999865
No 170
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.20 E-value=8.3e-11 Score=102.97 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=45.7
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCC------CchHHHHHHHHHHhc--CCCeEEEEEe
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL------DISDEFKRVITSLRG--HDDKIRVVLN 358 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~------~~~~~~~~~l~~l~~--~~~~viiv~n 358 (394)
.+.++||||... |..+.+.++.++|++|+++|+... .....+.+++..+.. .+.|+++|.|
T Consensus 75 ~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~N 143 (198)
T 3t1o_A 75 RFHLYTVPGQVF-----------YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVN 143 (198)
T ss_dssp EEEEEECCSCCS-----------CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEE
T ss_pred EEEEEeCCChHH-----------HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEE
Confidence 678999999743 122556778999999999999731 111222334444422 4679999999
Q ss_pred cCCccC
Q 016165 359 KADQVD 364 (394)
Q Consensus 359 K~Dl~~ 364 (394)
|+|+.+
T Consensus 144 K~Dl~~ 149 (198)
T 3t1o_A 144 KRDLPD 149 (198)
T ss_dssp CTTSTT
T ss_pred chhccc
Confidence 999864
No 171
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=3.8e-11 Score=105.10 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=73.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|++... .....|..+...... .+.+.+. .
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~----~--------- 63 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDTF---DPELAATIGVDFKVK-----------------TISVDGN----K--------- 63 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC---CTTCCCCCSEEEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CccCCCccceEEEEE-----------------EEEECCe----E---------
Confidence 899999999999999999998773 222223222211100 0000000 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+.. .+.|++
T Consensus 64 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 125 (195)
T 1x3s_A 64 -------AKLAIWDTAGQER-----------FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 125 (195)
T ss_dssp -------EEEEEEEECSSGG-----------GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE
T ss_pred -------EEEEEEeCCCchh-----------hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence 1678999999732 111456678999999999999872222334456666654 367999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 126 lv~nK~Dl~~ 135 (195)
T 1x3s_A 126 LVGNKIDKEN 135 (195)
T ss_dssp EEEECTTSSS
T ss_pred EEEECCcCcc
Confidence 9999999853
No 172
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.20 E-value=2e-11 Score=105.46 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=65.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....|..+..... ..+.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~-----------------~~~~~~~~-------------- 55 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDKY---SQQYKATIGADFLT-----------------KEVTVDGD-------------- 55 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC---CTTC---CCCSCEE-----------------EEECCSSS--------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC---CcccCCccceEEEE-----------------EEEEEcCC--------------
Confidence 899999999999999999999773 22222222211100 00001100
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc-------CCC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-------HDD 351 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~-------~~~ 351 (394)
-...+.++||||... |..+...++.++|++|+++|+...........++..+.. .+.
T Consensus 56 -----~~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 119 (182)
T 1ky3_A 56 -----KVATMQVWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119 (182)
T ss_dssp -----CCEEEEEECCC---------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTC
T ss_pred -----cEEEEEEEECCCChH-----------hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCC
Confidence 001678999999632 111334567899999999999872222223344444322 467
Q ss_pred eEEEEEecCCcc
Q 016165 352 KIRVVLNKADQV 363 (394)
Q Consensus 352 ~viiv~nK~Dl~ 363 (394)
|+++|.||+|+.
T Consensus 120 p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 120 PFVILGNKIDAE 131 (182)
T ss_dssp CEEEEEECTTSC
T ss_pred cEEEEEECCccc
Confidence 999999999984
No 173
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.20 E-value=3.6e-11 Score=105.69 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=70.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.|++... .....|..+...... .+.+.+. .
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~----~--------- 74 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDTF---CEACKSTVGVDFKIK-----------------TVELRGK----K--------- 74 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-----------CCTTEEEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CcCCCCccceeEEEE-----------------EEEECCe----E---------
Confidence 799999999999999999998763 222223332221100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHH---HHHHhcCCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRV---ITSLRGHDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~---l~~l~~~~~~vii 355 (394)
..+.++||||... |..+...++.++|++|+++|+...........+ ++.....+.|+++
T Consensus 75 -------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piil 136 (192)
T 2il1_A 75 -------IRLQIWDTAGQER-----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136 (192)
T ss_dssp -------EEEEEEEECCSGG-----------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred -------EEEEEEeCCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 1678999999732 122566788999999999999872222222233 3333345789999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 137 V~NK~Dl~~~ 146 (192)
T 2il1_A 137 VGNKLDCETD 146 (192)
T ss_dssp EEECGGGGGG
T ss_pred EEECcccccc
Confidence 9999998643
No 174
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.20 E-value=4.9e-11 Score=113.28 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=78.8
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|.+|||||||+|.+++... ..++..+++|....... ..+.+ .
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~--~~~~~~~~~Ti~~~~~~-----------------~~~~~-----~-------- 51 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS--AFDTRRLGATIDVEHSH-----------------LRFLG-----N-------- 51 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC--TGGGGGCCCCCSEEEEE-----------------EEETT-----T--------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CccccCcCCccceEEEE-----------------EEeCC-----c--------
Confidence 3799999999999999999998764 44544555554322100 00000 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHH---HHHHHhc--CCCe
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKR---VITSLRG--HDDK 352 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~---~l~~l~~--~~~~ 352 (394)
..+.++||||...-.. ... ..+...++.++|++|+++|+........+.. ++..+.. .+.|
T Consensus 52 --------~~l~i~Dt~G~~~~~~-~~~-----~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p 117 (307)
T 3r7w_A 52 --------MTLNLWDCGGQDVFME-NYF-----TKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK 117 (307)
T ss_dssp --------EEEEEEEECCSHHHHH-HHH-----TTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred --------eEEEEEECCCcHHHhh-hhh-----hhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe
Confidence 1778999999832100 000 1156678899999999999987433343323 3444432 3789
Q ss_pred EEEEEecCCccCH
Q 016165 353 IRVVLNKADQVDT 365 (394)
Q Consensus 353 viiv~nK~Dl~~~ 365 (394)
+++|.||+|+.+.
T Consensus 118 iilv~NK~Dl~~~ 130 (307)
T 3r7w_A 118 IFVLLHKMDLVQL 130 (307)
T ss_dssp EEEEEECGGGSCH
T ss_pred EEEEEecccccch
Confidence 9999999999873
No 175
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.20 E-value=4.1e-12 Score=110.43 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=54.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.+++.. ......|+.+.+.... .+.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~-----------------~~~~~~~------------- 55 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDA---FNSTFISTIGIDFKIR-----------------TIELDGK------------- 55 (183)
T ss_dssp EEEEEECCCCC-------------------CHHHHHCEEEEEE-----------------EEEETTE-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEE-----------------EEEECCE-------------
Confidence 379999999999999999999766 2223334443322100 0000110
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vi 354 (394)
-..+.++||||...- ..+...++.++|++|+++|+...........++..+.. .+.|++
T Consensus 56 -------~~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 117 (183)
T 2fu5_C 56 -------RIKLQIWDTAGQERF-----------RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM 117 (183)
T ss_dssp -------EEEEEEEEC--------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred -------EEEEEEEcCCCChhh-----------hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 016789999997431 11233457899999999999872222334445555543 468999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 118 lv~nK~Dl~~ 127 (183)
T 2fu5_C 118 ILGNKCDVND 127 (183)
T ss_dssp EEEEC--CCS
T ss_pred EEEECccCCc
Confidence 9999999864
No 176
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=3.2e-11 Score=107.25 Aligned_cols=116 Identities=16% Similarity=0.246 Sum_probs=73.0
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.|++... .....|+.+.+.... .+.+.+. .
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~----~-------- 74 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMIK-----------------TVEINGE----K-------- 74 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC---CTTCCCCCSEEEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC---CCCCCCccceeEEEE-----------------EEEECCE----E--------
Confidence 3899999999999999999998763 222233333221100 0000110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH---hcCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l---~~~~~~vi 354 (394)
..+.++||||... |..+...++.++|++|+++|+........+..++..+ ...+.|++
T Consensus 75 --------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii 135 (201)
T 2ew1_A 75 --------VKLQIWDTAGQER-----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV 135 (201)
T ss_dssp --------EEEEEEEECCSGG-----------GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEECCCcHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 1678999999732 1224456689999999999998622122223444443 33478999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 136 lv~NK~Dl~~ 145 (201)
T 2ew1_A 136 LVGNKIDLAE 145 (201)
T ss_dssp EEEECGGGGG
T ss_pred EEEECCCCcc
Confidence 9999999864
No 177
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.19 E-value=3.9e-11 Score=113.61 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=21.3
Q ss_pred eeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhc
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRT 220 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~ 220 (394)
+++.|++ +.++++++|+ |+|+|+||||||||+|+|+|.
T Consensus 4 l~~~~~~--~~~l~~~~~~----I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 4 LPNQVHR--KSVKKGFEFT----LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ----------------CEE----EEEEEETTSSHHHHHHHHHC-
T ss_pred CcceECC--EEEEcCCCEE----EEEECCCCCCHHHHHHHHhCC
Confidence 4556766 5688888765 599999999999999999997
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.18 E-value=1.3e-10 Score=103.31 Aligned_cols=138 Identities=19% Similarity=0.241 Sum_probs=75.0
Q ss_pred eeeeeecCCcCcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeee
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAV 255 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~ 255 (394)
++++.|+. .+++++.+..+.+|+|+|+||||||||+|+|+|.... ..+++.+++++..-
T Consensus 8 ~~~~~~~~---~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~-~~~~~~~G~~~~~~----------------- 66 (210)
T 1pui_A 8 QTHFVMSA---PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSL-ARTSKTPGRTQLIN----------------- 66 (210)
T ss_dssp ---CEEEE---SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEE-----------------
T ss_pred hhhheeec---CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccccCCCccceeeE-----------------
Confidence 34556652 4677755544559999999999999999999997620 22222333322110
Q ss_pred ccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCch-----hhhhhhcccChHHHHHHHh---hcCCEEEEE
Q 016165 256 QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG-----EKQRTQRAYDFTGVTSWFA---AKCDLILLL 327 (394)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsG-----e~qrv~~~~~~~~iaral~---~~~dllLl~ 327 (394)
..... ..+.++||||+... .+.+.. .....+. ..++.++++
T Consensus 67 --------~~~~~-----------------~~~~l~Dt~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v 115 (210)
T 1pui_A 67 --------LFEVA-----------------DGKRLVDLPGYGYAEVPEEMKRKWQ------RALGEYLEKRQSLQGLVVL 115 (210)
T ss_dssp --------EEEEE-----------------TTEEEEECCCCC------CCHHHHH------HHHHHHHHHCTTEEEEEEE
T ss_pred --------EEEec-----------------CCEEEEECcCCcccccCHHHHHHHH------HHHHHHHHhhhcccEEEEE
Confidence 00000 14578999998531 011111 1112233 467888899
Q ss_pred eCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH
Q 016165 328 FDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (394)
Q Consensus 328 lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~ 366 (394)
+|.... ......++.+.+...+.+++++.||+|+.+..
T Consensus 116 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 116 MDIRHP-LKDLDQQMIEWAVDSNIAVLVLLTKADKLASG 153 (210)
T ss_dssp EETTSC-CCHHHHHHHHHHHHTTCCEEEEEECGGGSCHH
T ss_pred EECCCC-CchhHHHHHHHHHHcCCCeEEEEecccCCCch
Confidence 998752 22222334444455678999999999987654
No 179
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.18 E-value=4.1e-11 Score=117.88 Aligned_cols=152 Identities=15% Similarity=0.165 Sum_probs=80.2
Q ss_pred eeeecCCcCcccccCCCCccc--E--EEEeecCCCchhHHHHHHHhccCCCCCcCC-CcccceeEEEEecCcccccCCce
Q 016165 178 TYRFNDFVSPLLTNSDFDAKP--M--VMLLGQYSTGKTTFIKHLLRTSYPGAHIGP-EPTTDRFVVVMSGVDDRSIPGNT 252 (394)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~--vaIvG~~gaGKSTLln~L~g~~~~~~~vs~-~p~t~r~~i~~~~~~~~~~~~~~ 252 (394)
++.|++ .. ++++++++.. + ++|+|+||||||||+|+|+|....+..+.. .|...+..+.+..
T Consensus 22 ~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~---------- 88 (427)
T 2qag_B 22 HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDL---------- 88 (427)
T ss_dssp CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEE----------
T ss_pred EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEe----------
Confidence 567766 34 8999988876 6 999999999999999999998632112211 2222222222221
Q ss_pred eeeccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCch---h--hhhhhccc--ChHHHHHHH--------
Q 016165 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG---E--KQRTQRAY--DFTGVTSWF-------- 317 (394)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsG---e--~qrv~~~~--~~~~iaral-------- 317 (394)
+....+ ..+.+.|++|.... . ...+...+ .|......+
T Consensus 89 ---Q~~~l~------------------------~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~ 141 (427)
T 2qag_B 89 ---QESNVR------------------------LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLH 141 (427)
T ss_dssp ---EC--CE------------------------EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCC
T ss_pred ---ecCccc------------------------cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 111100 13455666655320 0 00000000 000000111
Q ss_pred -hhcCC---EEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHH
Q 016165 318 -AAKCD---LILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV 371 (394)
Q Consensus 318 -~~~~d---llLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~ 371 (394)
..+++ +++++.|+.. +......++++.|. .+.++|+|.||+|....+++..+
T Consensus 142 ~~~d~rVh~~v~fI~d~~~-~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 142 TYHDSRIHVCLYFIAPTGH-SLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp CSCC--CCEEEEEECCCC----CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHH
T ss_pred ccccccccEEEEEEeCCCC-CCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHH
Confidence 12233 3555777654 55666678888887 67899999999999888777665
No 180
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.18 E-value=7.4e-11 Score=103.11 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=72.2
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.+.+... . ...|+.+.... .+.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~--~--~~~~t~~~~~~-------------------~~~~~~-------------- 65 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDV--V--TTVPTVGVNLE-------------------TLQYKN-------------- 65 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCC--E--EECSSTTCCEE-------------------EEEETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--C--CcCCCCceEEE-------------------EEEECC--------------
Confidence 3899999999999999999986552 1 11121111000 000011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++||||...-. . +.+.++.++|++|+++|+...........++..+.. .+.|+
T Consensus 66 --------~~~~~~Dt~G~~~~~--~---------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 126 (189)
T 2x77_A 66 --------ISFEVWDLGGQTGVR--P---------YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLL 126 (189)
T ss_dssp --------EEEEEEEECCSSSSC--C---------CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEE
T ss_pred --------EEEEEEECCCCHhHH--H---------HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeE
Confidence 277899999984311 1 122346899999999999874434555555555543 37899
Q ss_pred EEEEecCCccCH
Q 016165 354 RVVLNKADQVDT 365 (394)
Q Consensus 354 iiv~nK~Dl~~~ 365 (394)
++|.||+|+.+.
T Consensus 127 ilv~nK~Dl~~~ 138 (189)
T 2x77_A 127 LIFANKQDLPDA 138 (189)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECCCCcCC
Confidence 999999999654
No 181
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.18 E-value=5.6e-11 Score=105.44 Aligned_cols=116 Identities=18% Similarity=0.191 Sum_probs=72.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.|++... .....|+.+...... .+.+.+. .
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~----~-------- 56 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTY---TNDYISTIGVDFKIK-----------------TVELDGK----T-------- 56 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC---CTTCCCSSCCCEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcccceeEEE-----------------EEEECCE----E--------
Confidence 4899999999999999999999773 222233333211100 0000010 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vi 354 (394)
..+.++||||...-. .+...++.++|++|+++|+...........++..+. ..+.|++
T Consensus 57 --------~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 117 (206)
T 2bcg_Y 57 --------VKLQIWDTAGQERFR-----------TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 117 (206)
T ss_dssp --------EEEEEECCTTTTTTT-----------CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEeCCChHHHH-----------HHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 167899999974310 022345789999999999987222233344555443 3468999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 118 lv~nK~Dl~~ 127 (206)
T 2bcg_Y 118 LVGNKCDLKD 127 (206)
T ss_dssp EEEECTTCTT
T ss_pred EEEECCCCcc
Confidence 9999999865
No 182
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=4.5e-11 Score=104.93 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=71.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.+++... .....|+++..... .+.+.+. .
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 65 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAV------------------SVTVGGK----Q--------- 65 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC---CCSCCCSSCCCEEE------------------EEESSSC----E---------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcccceeEE------------------EEEECCE----E---------
Confidence 899999999999999999998763 11112222211100 0001110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHH-HHHHHHhcC--CCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRGH--DDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~-~~l~~l~~~--~~~vii 355 (394)
..+.++||||...-. .+.+.++.++|++|+++|+.......... .++..+.+. +.|+++
T Consensus 66 -------~~~~i~D~~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 127 (194)
T 2atx_A 66 -------YLLGLYDTAGQEDYD-----------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL 127 (194)
T ss_dssp -------EEEEEECCCCSSSST-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEE
T ss_pred -------EEEEEEECCCCcchh-----------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 167899999984311 12334578999999999998722222232 355555443 789999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 128 v~nK~Dl~~~ 137 (194)
T 2atx_A 128 IGTQIDLRDD 137 (194)
T ss_dssp EEECTTSTTC
T ss_pred EEEChhhccc
Confidence 9999999654
No 183
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.18 E-value=1.1e-11 Score=120.74 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=64.4
Q ss_pred cCCCCCc-hhhhhhhcccChHHHHHHHh------hcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEec
Q 016165 292 DTPGVLS-GEKQRTQRAYDFTGVTSWFA------AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (394)
Q Consensus 292 Dt~g~ls-Ge~qrv~~~~~~~~iaral~------~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK 359 (394)
..++.+| ||+||+. +|++++ .+|+++|+ .+|+.. ...+.++++.+.+.+.++++|+
T Consensus 275 ~~~~~LSgGe~qr~~-------la~al~~~~~~~~~p~~lllDEpt~~LD~~~---~~~~~~~l~~l~~~g~tvi~it-- 342 (365)
T 3qf7_A 275 RPARGLSGGERALIS-------ISLAMSLAEVASGRLDAFFIDEGFSSLDTEN---KEKIASVLKELERLNKVIVFIT-- 342 (365)
T ss_dssp EEGGGSCHHHHHHHH-------HHHHHHHHHHTTTTCCEEEEESCCTTSCHHH---HHHHHHHHHGGGGSSSEEEEEE--
T ss_pred CCchhCCHHHHHHHH-------HHHHHHhhhcccCCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHhCCCEEEEEe--
Confidence 3677899 9999999 999998 69999999 777765 7778888998887788999998
Q ss_pred CCccCHHHHHHHHhHhhhccceeee
Q 016165 360 ADQVDTQQLMRVYGALMWSLGKVLN 384 (394)
Q Consensus 360 ~Dl~~~~~~~~~~~~~~~~~G~i~~ 384 (394)
|+.+....+++++++++|+++.
T Consensus 343 ---H~~~~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 343 ---HDREFSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp ---SCHHHHTTCSCEEEEETTEEC-
T ss_pred ---cchHHHHhCCEEEEEECCEEEe
Confidence 7776644348999999999864
No 184
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.17 E-value=8.1e-11 Score=101.92 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=68.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....|.++..... .+.+.+. .
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 53 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQF---VDSYDPTIENTFTK------------------LITVNGQ----E--------- 53 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEE------------------EEEETTE----E---------
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---CCCCCCCccccEEE------------------EEEECCE----E---------
Confidence 799999999999999999997652 11112222221100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
..+.++||||.... .. +...++.++|++++++|.........+..++..+. ..+.|++
T Consensus 54 -------~~~~l~Dt~G~~~~--~~---------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 115 (181)
T 3t5g_A 54 -------YHLQLVDTAGQDEY--SI---------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 115 (181)
T ss_dssp -------EEEEEEECCCCCTT--CC---------CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEE
T ss_pred -------EEEEEEeCCCchhh--hH---------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 15689999998541 00 22345789999999999987222233333444432 3478999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 116 lv~nK~Dl~~ 125 (181)
T 3t5g_A 116 LVGNKKDLHM 125 (181)
T ss_dssp EEEECTTCTT
T ss_pred EEEECccchh
Confidence 9999999854
No 185
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=7.3e-11 Score=103.75 Aligned_cols=115 Identities=18% Similarity=0.308 Sum_probs=70.6
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.|++... .....|..+..... . ..+.+ ..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~--------------~----~~~~~----~~-------- 55 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTF---RDTYIPTIEDTYRQ--------------V----ISCDK----SV-------- 55 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC---CCTTSCCCCEEEEE--------------E----EEETT----EE--------
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCC---CCcccCccccceeE--------------E----EEECC----EE--------
Confidence 3899999999999999999998763 11112222111000 0 00000 00
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHH---HHHHHHHHhc--CCCe
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDE---FKRVITSLRG--HDDK 352 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~---~~~~l~~l~~--~~~~ 352 (394)
..+.++||||... |..+.+.++.++|++|+++|+........ ....+..+.. .+.|
T Consensus 56 --------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p 116 (199)
T 2gf0_A 56 --------CTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP 116 (199)
T ss_dssp --------EEEEEEECCGGGS-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC
T ss_pred --------EEEEEEeCCChHH-----------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 1678999999632 12255667899999999999976211111 2233444432 2679
Q ss_pred EEEEEecCCccC
Q 016165 353 IRVVLNKADQVD 364 (394)
Q Consensus 353 viiv~nK~Dl~~ 364 (394)
+++|.||+|+.+
T Consensus 117 iilv~nK~Dl~~ 128 (199)
T 2gf0_A 117 VMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEECTTCSS
T ss_pred EEEEEECccCCc
Confidence 999999999864
No 186
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.17 E-value=3.5e-11 Score=105.57 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=70.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|++... .....+..+...... .+.+.+. .
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~----~--------- 69 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGAR-----------------MVNIDGK----Q--------- 69 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC---CC-----CCSSEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC---CCCCCCcccceeEEE-----------------EEEECCE----E---------
Confidence 899999999999999999998773 221222222111000 0000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vii 355 (394)
..+.++||||... - ..+...++.++|++|+++|+...........++..+.. .+.|+++
T Consensus 70 -------~~~~i~Dt~G~~~---~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piil 131 (191)
T 2a5j_A 70 -------IKLQIWDTAGQES---F--------RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIML 131 (191)
T ss_dssp -------EEEEEECCTTGGG---T--------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred -------EEEEEEECCCchh---h--------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 1678999999632 1 11345678999999999999862222333445555443 4789999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 132 v~nK~Dl~~ 140 (191)
T 2a5j_A 132 IGNKSDLES 140 (191)
T ss_dssp EEECTTCGG
T ss_pred EEECcccCC
Confidence 999999854
No 187
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.17 E-value=1.3e-10 Score=101.60 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=71.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.|++... .....+..+...... . +.+.+ ..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~---------------~--~~~~~----~~-------- 70 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSF---TPAFVSTVGIDFKVK---------------T--VYRHD----KR-------- 70 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC---CCSCCCCCCCEEEEE---------------E--EEETT----EE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCcCCceeEEEEEE---------------E--EEECC----eE--------
Confidence 3899999999999999999999773 111122222111000 0 00000 00
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vi 354 (394)
..+.++||||...-. .+...++.++|++|+++|+...........++..+.. .+.|++
T Consensus 71 --------~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 131 (189)
T 2gf9_A 71 --------IKLQIWDTAGQERYR-----------TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI 131 (189)
T ss_dssp --------EEEEEEECCSCCSSC-----------CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEeCCCcHHHh-----------hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 167899999974310 0223457899999999999762222333445555543 478999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 132 lv~nK~Dl~~ 141 (189)
T 2gf9_A 132 LVGNKCDLED 141 (189)
T ss_dssp EEEECTTCGG
T ss_pred EEEECccccc
Confidence 9999999865
No 188
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=7.8e-11 Score=104.82 Aligned_cols=116 Identities=21% Similarity=0.274 Sum_probs=70.1
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|++... .....|.++..... .+.+.+. .
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 72 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDEF---PEVYVPTVFENYVA------------------DIEVDGK----Q--------- 72 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC---C-------CCEEEE------------------EEEETTE----E---------
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC---CCcCCCcccceEEE------------------EEEECCE----E---------
Confidence 899999999999999999999773 22222332221110 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHH-HHHHHHHhc--CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~-~~~l~~l~~--~~~~vii 355 (394)
..+.++||||...-. . +...++.++|++|+++|+......... ..++..+.. .+.|+++
T Consensus 73 -------~~~~i~Dt~G~~~~~--~---------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 134 (207)
T 2fv8_A 73 -------VELALWDTAGQEDYD--R---------LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIIL 134 (207)
T ss_dssp -------EEEEEEECTTCTTCT--T---------TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEE
T ss_pred -------EEEEEEECCCcHHHH--H---------HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 167899999974311 1 223457899999999999862111222 234444443 3789999
Q ss_pred EEecCCccCHH
Q 016165 356 VLNKADQVDTQ 366 (394)
Q Consensus 356 v~nK~Dl~~~~ 366 (394)
|.||+|+.+..
T Consensus 135 v~nK~Dl~~~~ 145 (207)
T 2fv8_A 135 VANKKDLRSDE 145 (207)
T ss_dssp EEECGGGGGCH
T ss_pred EEEchhhhccc
Confidence 99999996543
No 189
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.17 E-value=8.9e-11 Score=103.70 Aligned_cols=115 Identities=22% Similarity=0.257 Sum_probs=68.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.|++... .....+..+..... ..+.+.+. .
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~-----------------~~~~~~~~----~-------- 76 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNEF---RENISATLGVDFQM-----------------KTLIVDGE----R-------- 76 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCCC---C----------CEE-----------------EEEEETTE----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC---CccCCCCccceeEE-----------------EEEEECCE----E--------
Confidence 3899999999999999999998763 11111111110000 00000010 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vi 354 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+. ..+.|++
T Consensus 77 --------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 137 (199)
T 2p5s_A 77 --------TVLQLWDTAGQER-----------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIM 137 (199)
T ss_dssp --------EEEEEEECTTCTT-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEE
T ss_pred --------EEEEEEECCCCcc-----------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 1578999999743 12255677899999999999976222222334444443 3478999
Q ss_pred EEEecCCcc
Q 016165 355 VVLNKADQV 363 (394)
Q Consensus 355 iv~nK~Dl~ 363 (394)
+|.||+|+.
T Consensus 138 lv~NK~Dl~ 146 (199)
T 2p5s_A 138 LVGNKADIR 146 (199)
T ss_dssp EEEECGGGH
T ss_pred EEEECcccc
Confidence 999999985
No 190
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=3.1e-11 Score=105.87 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=72.6
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccc--eeEEEEecCcccccCCceeeeccCCCCCcccccccccchhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD--RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~--r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 275 (394)
.+|+++|++|+|||||+|.|++... .....+..+ .....+. ....+
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~-----------------~~~~~------------ 71 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTF---TPAFVSTVGIDFKVKTVY-----------------RHEKR------------ 71 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT---CCCEEEEETTTEEEEEEE-----------------ETTTT------------
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCC---CcccCCCeeeEEEEEEEE-----------------ECCEE------------
Confidence 3899999999999999999999773 111111111 1100000 00001
Q ss_pred hhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCe
Q 016165 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDK 352 (394)
Q Consensus 276 ~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~ 352 (394)
..+.++||||.. + |..+...++.++|++|+++|+........+..++..+.. .+.|
T Consensus 72 ----------~~~~i~Dt~G~~---~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 130 (191)
T 3dz8_A 72 ----------VKLQIWDTAGQE---R--------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ 130 (191)
T ss_dssp ----------EEEEEECHHHHH---H--------CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred ----------EEEEEEeCCChH---H--------HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 167899999852 1 222567789999999999999862222333445555543 5789
Q ss_pred EEEEEecCCccC
Q 016165 353 IRVVLNKADQVD 364 (394)
Q Consensus 353 viiv~nK~Dl~~ 364 (394)
+++|.||+|+.+
T Consensus 131 iilv~nK~Dl~~ 142 (191)
T 3dz8_A 131 VILVGNKCDMEE 142 (191)
T ss_dssp EEEEEECTTCGG
T ss_pred EEEEEECCCCcc
Confidence 999999999854
No 191
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.16 E-value=1.2e-10 Score=101.71 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=66.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|.+|||||||+|.|++... .....+ +....... .+.+.+. .
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~-t~~~~~~~-----------------~~~~~~~----~--------- 68 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNHF---VDEYDP-TIEDSYRK-----------------QVVIDGE----T--------- 68 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC---CSCCCT-TCCEEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---ccccCC-ccceEEEE-----------------EEEECCE----E---------
Confidence 899999999999999999998763 111122 22211100 0000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... |..+...++.++|++++++|............++..+.. .+.|++
T Consensus 69 -------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 130 (190)
T 3con_A 69 -------CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130 (190)
T ss_dssp -------EEEEEEECCC----------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE
T ss_pred -------EEEEEEECCChHH-----------HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 1578999999742 111445678999999999999862222333344444332 378999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 131 lv~nK~Dl~~ 140 (190)
T 3con_A 131 LVGNKCDLPT 140 (190)
T ss_dssp EEEECTTCSC
T ss_pred EEEECCcCCc
Confidence 9999999864
No 192
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.16 E-value=1.2e-10 Score=101.33 Aligned_cols=112 Identities=24% Similarity=0.385 Sum_probs=70.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++.. ...+..|+++.....+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~t~~~~~~~------------------------------------- 42 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK---VRRGKRPGVTRKIIEIE------------------------------------- 42 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC---CSSSSSTTCTTSCEEEE-------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCcC---CccCCCCCccceeEEEe-------------------------------------
Confidence 68999999999999999999977 44444554443221100
Q ss_pred cCCccccccceeecCCCCCc--h----hhhhhhcccChHHHHHHH----hhcCCEEEEEeCCCCCCchHHH---------
Q 016165 279 QMPHSLLEHITLVDTPGVLS--G----EKQRTQRAYDFTGVTSWF----AAKCDLILLLFDPHKLDISDEF--------- 339 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~ls--G----e~qrv~~~~~~~~iaral----~~~~dllLl~lD~~~~~~~~~~--------- 339 (394)
...+.++||||... + .+.+.. .+...+ +..+++++.++|... ....
T Consensus 43 ------~~~~~l~Dt~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~v~d~~s---~~~~~~~~~~~~~ 107 (190)
T 2cxx_A 43 ------WKNHKIIDMPGFGFMMGLPKEVQERIK------DEIVHFIEDNAKNIDVAVLVVDGKA---APEIIKRWEKRGE 107 (190)
T ss_dssp ------ETTEEEEECCCBSCCTTSCHHHHHHHH------HHHHHHHHHHGGGCCEEEEEEETTH---HHHHHHHHHHTTC
T ss_pred ------cCCEEEEECCCccccccCCHHHHHHHH------HHHHHHHHhhhccCCEEEEEEcchh---hhhHHHhhhccCc
Confidence 01567999999643 1 011111 133333 344667878888764 2222
Q ss_pred ----HHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 340 ----KRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 340 ----~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
.++++.+...+.|+++|.||+|+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 108 IPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred cHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 22344455567899999999999764
No 193
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.16 E-value=3.9e-10 Score=100.57 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=70.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|++|+|||||+|.+++... .. ..+.++..... +.+.+. ..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~--~~--~~~~~~~~~~~-------------------~~~~~~---~~-------- 53 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQY--RD--TQTSITDSSAI-------------------YKVNNN---RG-------- 53 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCC--CC--BCCCCSCEEEE-------------------EECSST---TC--------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--cc--ccCCcceeeEE-------------------EEecCC---Cc--------
Confidence 3899999999999999999998763 11 11222221110 001100 00
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHH---HHHHHHH------hc
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF---KRVITSL------RG 348 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~---~~~l~~l------~~ 348 (394)
..+.++||||+. +-+-. +...++.+++++|+++|+.. ..... .+++..+ ..
T Consensus 54 --------~~~~i~Dt~G~~---~~~~~-------~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (214)
T 2fh5_B 54 --------NSLTLIDLPGHE---SLRFQ-------LLDRFKSSARAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALK 113 (214)
T ss_dssp --------CEEEEEECCCCH---HHHHH-------HHHHHGGGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTST
T ss_pred --------cEEEEEECCCCh---hHHHH-------HHHHHHhhCCEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcc
Confidence 167899999983 22211 44567899999999999976 11222 2222222 12
Q ss_pred CCCeEEEEEecCCccCH
Q 016165 349 HDDKIRVVLNKADQVDT 365 (394)
Q Consensus 349 ~~~~viiv~nK~Dl~~~ 365 (394)
.+.|+++|.||+|+.+.
T Consensus 114 ~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 114 NSPSLLIACNKQDIAMA 130 (214)
T ss_dssp TCCEEEEEEECTTSTTC
T ss_pred cCCCEEEEEECCCCCCc
Confidence 36899999999998643
No 194
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=5.4e-11 Score=106.81 Aligned_cols=118 Identities=18% Similarity=0.125 Sum_probs=71.3
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+|+|.+|+|||||+|.++|... .+++..+.++.+.... .+.+.+. .
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~--~~~~~~~~~g~d~~~~-----------------~i~~~~~----~-------- 86 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHD--SMDSDCEVLGEDTYER-----------------TLMVDGE----S-------- 86 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCC--TTCCC---CCTTEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCCCcCCccceeeEEE-----------------EEEECCe----e--------
Confidence 3899999999999999999998653 3344334343322100 0001110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
..+.++||+|.. .+.-. +.+.+.+.++.+|+++|............+...+.+ .+.|+
T Consensus 87 --------~~l~~~Dt~g~~---~~~~~-------l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pi 148 (211)
T 2g3y_A 87 --------ATIILLDMWENK---GENEW-------LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148 (211)
T ss_dssp --------EEEEEECCTTTT---HHHHH-------HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCE
T ss_pred --------eEEEEeecCCCc---chhhh-------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 145688999862 21111 444556789999999998762222333345444432 36899
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 149 ilVgNK~DL~~ 159 (211)
T 2g3y_A 149 ILVGNKSDLVR 159 (211)
T ss_dssp EEEEECTTCGG
T ss_pred EEEEEChHHhc
Confidence 99999999854
No 195
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.16 E-value=6e-11 Score=110.46 Aligned_cols=121 Identities=18% Similarity=0.301 Sum_probs=73.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|.+|+|||||+|.|++... ..++..++++....... +...+
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~--~~~~~~~~~t~~~~~~~-----------------~~~~~-------------- 86 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERV--VSISPFQSEGPRPVMVS-----------------RSRAG-------------- 86 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSSCCCSSCEEEE-----------------EEETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCcceeeEEEE-----------------EeeCC--------------
Confidence 3799999999999999999999875 45555555544221100 00011
Q ss_pred hcCCccccccceeecCCCCCchh---hhhhhcccChHHHHHHH-hhcCCEEEEEeCCCCCCchHHHHHHHHHHhcC-C--
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGE---KQRTQRAYDFTGVTSWF-AAKCDLILLLFDPHKLDISDEFKRVITSLRGH-D-- 350 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe---~qrv~~~~~~~~iaral-~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~-~-- 350 (394)
..+.++||||+.+.. .+... .+.+.+ ...+|++|+++|+..........++++.+.+. +
T Consensus 87 --------~~l~iiDTpG~~~~~~~~~~~~~------~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~ 152 (270)
T 1h65_A 87 --------FTLNIIDTPGLIEGGYINDMALN------IIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG 152 (270)
T ss_dssp --------EEEEEEECCCSEETTEECHHHHH------HHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG
T ss_pred --------eEEEEEECCCCCCCccchHHHHH------HHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc
Confidence 167899999996521 11111 021211 34799999996654322334444555555432 2
Q ss_pred --CeEEEEEecCCccCH
Q 016165 351 --DKIRVVLNKADQVDT 365 (394)
Q Consensus 351 --~~viiv~nK~Dl~~~ 365 (394)
.++++|.||+|+...
T Consensus 153 ~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 153 IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp GGGGEEEEEECCSCCCG
T ss_pred cccCEEEEEECcccCCc
Confidence 589999999998644
No 196
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.16 E-value=2e-11 Score=109.34 Aligned_cols=126 Identities=24% Similarity=0.255 Sum_probs=73.3
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.|++... .....|+.+...... .+.........+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~---~~~~~~t~~~~~~~~-----------~~~~~~~~~~~~~------------- 78 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKF---NPKFITTVGIDFREK-----------RVVYNAQGPNGSS------------- 78 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCC---CCEEEEEEEEEEEEE-----------EEEEEC--------------------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC---CcCCCCceeEEEEEE-----------EEEECCccccccc-------------
Confidence 4899999999999999999998763 111112111110000 0000000000000
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~v 353 (394)
....-..+.++||||.. + |..+...++.++|++|+++|+...........++..+.. .+.|+
T Consensus 79 ---~~~~~~~l~l~Dt~G~~---~--------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~pi 144 (217)
T 2f7s_A 79 ---GKAFKVHLQLWDTAGQE---R--------FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144 (217)
T ss_dssp ---CCEEEEEEEEEEEESHH---H--------HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEE
T ss_pred ---cCceeEEEEEEECCCcH---h--------HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCE
Confidence 00001267899999962 1 222567788999999999999872222333445555543 46799
Q ss_pred EEEEecCCccC
Q 016165 354 RVVLNKADQVD 364 (394)
Q Consensus 354 iiv~nK~Dl~~ 364 (394)
++|.||+|+.+
T Consensus 145 ilV~NK~Dl~~ 155 (217)
T 2f7s_A 145 VLIGNKADLPD 155 (217)
T ss_dssp EEEEECTTCGG
T ss_pred EEEEECCcccc
Confidence 99999999864
No 197
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.16 E-value=2.2e-11 Score=109.80 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=69.0
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.|++... .....|+.+...... .+.+.+. .
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~----~-------- 61 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEF---NMDSKSTIGVEFATR-----------------TLEIEGK----R-------- 61 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCC---CC------CCSEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC---CCCCCCcccceeEEE-----------------EEEECCE----E--------
Confidence 3899999999999999999999773 222222222211100 0000110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~~~vi 354 (394)
..+.++||||...- .. +...++.++|++|+++|+........+..++..+.. .+.|++
T Consensus 62 --------~~~~i~Dt~G~~~~--~~---------~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~pii 122 (223)
T 3cpj_B 62 --------IKAQIWDTAGQERY--RA---------ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVG 122 (223)
T ss_dssp --------EEEEEECCTTTTTT--TC---------CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEE
T ss_pred --------EEEEEEECCCccch--hh---------hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 16789999997431 01 233457899999999999872223334445555543 368999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 123 lv~nK~Dl~~ 132 (223)
T 3cpj_B 123 LIGNKSDLAH 132 (223)
T ss_dssp EEECCGGGGG
T ss_pred EEEECccccc
Confidence 9999999864
No 198
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.15 E-value=3.9e-11 Score=104.12 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=70.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.+++... .....|.++. .... . ..+.+. .
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~-~~~~-----------~------~~~~~~----~--------- 52 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFD-NYSA-----------N------VMVDGK----P--------- 52 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC---CSSCCCCSCC-EEEE-----------E------EEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCcCCcccc-eeEE-----------E------EEECCE----E---------
Confidence 799999999999999999998663 1111222211 1100 0 000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHH-HHHHHHhcC--CCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRGH--DDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~-~~l~~l~~~--~~~vii 355 (394)
..+.++||||... -+ .+...++.++|++|+++|+.......... .++..+... +.|+++
T Consensus 53 -------~~~~i~Dt~G~~~---~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 114 (186)
T 1mh1_A 53 -------VNLGLWDTAGQED---YD--------RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 114 (186)
T ss_dssp -------EEEEEECCCCSGG---GT--------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEE
T ss_pred -------EEEEEEECCCCHh---HH--------HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1567999999833 11 12234578999999999998622122222 344444432 789999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 115 v~nK~Dl~~~ 124 (186)
T 1mh1_A 115 VGTKLDLRDD 124 (186)
T ss_dssp EEECHHHHTC
T ss_pred EeEccccccc
Confidence 9999998654
No 199
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.15 E-value=1e-10 Score=103.60 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=71.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|.+|+|||||+|.+++... .....|+++..... .+.+.+. .
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 72 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQF---PEVYVPTVFENYIA------------------DIEVDGK----Q--------- 72 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC---CSSCCCSSCCCCEE------------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC---CcccCCcccceEEE------------------EEEECCE----E---------
Confidence 899999999999999999999773 22223333221100 0000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHH-HHHHHHHhc--CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~-~~~l~~l~~--~~~~vii 355 (394)
..+.++||||... .+. +...++.++|++|+++|+......... ..++..+.. .+.|+++
T Consensus 73 -------~~l~i~Dt~G~~~---~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 134 (201)
T 2gco_A 73 -------VELALWDTAGQED---YDR--------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134 (201)
T ss_dssp -------EEEEEECCCCSGG---GTT--------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEE
T ss_pred -------EEEEEEECCCchh---HHH--------HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1678999999732 111 223457899999999999862112222 234444433 2789999
Q ss_pred EEecCCccCHH
Q 016165 356 VLNKADQVDTQ 366 (394)
Q Consensus 356 v~nK~Dl~~~~ 366 (394)
|.||+|+.+..
T Consensus 135 v~nK~Dl~~~~ 145 (201)
T 2gco_A 135 VGNKKDLRQDE 145 (201)
T ss_dssp EEECGGGTTCH
T ss_pred EEecHHhhcCc
Confidence 99999997543
No 200
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.15 E-value=5.8e-11 Score=106.52 Aligned_cols=114 Identities=21% Similarity=0.250 Sum_probs=72.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||+|.+++... .....|+.+..... .+.+.+. .
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 74 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTA------------------CLETEEQ----R--------- 74 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEE------------------EEEC--C----E---------
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC---CCCcCCeeeeeEEE------------------EEEECCE----E---------
Confidence 899999999999999999998763 22222322221100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHH-HHHHHHHHhc--CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDE-FKRVITSLRG--HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~-~~~~l~~l~~--~~~~vii 355 (394)
..+.++||+|... -+ .+...++.++|++|+++|+........ ...++..+.. .+.|+++
T Consensus 75 -------~~l~i~Dt~G~~~---~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 136 (214)
T 3q3j_B 75 -------VELSLWDTSGSPY---YD--------NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 136 (214)
T ss_dssp -------EEEEEEEECCSGG---GT--------TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEE
T ss_pred -------EEEEEEECCCCHh---HH--------HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1678999999732 11 133446789999999999987332233 3345555543 3789999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 137 v~nK~Dl~~ 145 (214)
T 3q3j_B 137 IGCKTDLRT 145 (214)
T ss_dssp EEECGGGGG
T ss_pred EEEChhhcc
Confidence 999999864
No 201
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.15 E-value=7.1e-11 Score=102.92 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=69.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|+|||||+|.+++... .....|+.+..... .+.+.+. .
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 54 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTA------------------SFEIDTQ----R--------- 54 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEE------------------EEECSSC----E---------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEE------------------EEEECCE----E---------
Confidence 799999999999999999999763 21112222211100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHH-HHHHHHHhc--CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~-~~~l~~l~~--~~~~vii 355 (394)
..+.++||||...- .. +...++.++|++|+++|+......... ..++..+.+ .+.|+++
T Consensus 55 -------~~~~i~Dt~G~~~~--~~---------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 116 (184)
T 1m7b_A 55 -------IELSLWDTSGSPYY--DN---------VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116 (184)
T ss_dssp -------EEEEEEEECCSGGG--TT---------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEE
T ss_pred -------EEEEEEECCCChhh--hh---------hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEE
Confidence 16789999997321 11 223457899999999999862212222 233444433 3789999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 117 v~nK~Dl~~ 125 (184)
T 1m7b_A 117 VGCKSDLRT 125 (184)
T ss_dssp EEECGGGGG
T ss_pred EEEcchhhc
Confidence 999999864
No 202
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.15 E-value=1.7e-10 Score=103.29 Aligned_cols=111 Identities=21% Similarity=0.335 Sum_probs=69.6
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+.|+++|++|+|||||+|.|++...+....+..|.++. . +..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~----------------------~--~~~-------------- 54 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA----------------------D--YDG-------------- 54 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET----------------------T--GGG--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE----------------------E--eeC--------------
Confidence 48999999999999999999997731000011111110 0 011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhc----CCEEEEEeCCC-CCCchHHHHHHHHHHh-----
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAK----CDLILLLFDPH-KLDISDEFKRVITSLR----- 347 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~----~dllLl~lD~~-~~~~~~~~~~~l~~l~----- 347 (394)
..+.++||||+.. -+ .....++.+ ++++|+++|.. ..........++..+.
T Consensus 55 --------~~~~l~Dt~G~~~---~~--------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~ 115 (218)
T 1nrj_B 55 --------SGVTLVDFPGHVK---LR--------YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES 115 (218)
T ss_dssp --------SSCEEEECCCCGG---GT--------HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHH
T ss_pred --------ceEEEEECCCcHH---HH--------HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccc
Confidence 2778999999843 11 122333444 89999999998 3233344444444432
Q ss_pred --cCCCeEEEEEecCCccCH
Q 016165 348 --GHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 348 --~~~~~viiv~nK~Dl~~~ 365 (394)
..+.|+++|.||+|+.+.
T Consensus 116 ~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 116 SCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HSTTCCCEEEEEECTTSTTC
T ss_pred cccCCCCEEEEEEchHhccc
Confidence 247899999999998653
No 203
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.14 E-value=5.3e-11 Score=106.11 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=71.8
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|.+|+|||||+|.+.+... .....|+++..... .+.+.+. .
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~-------- 56 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSA------------------NVAVDGQ----I-------- 56 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCSSCCCEEE------------------EEECSSC----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC---CccCCCccceeEEE------------------EEEECCE----E--------
Confidence 3899999999999999999998763 11112222211100 0001110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHH-HHHHHHhc--CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~-~~l~~l~~--~~~~vi 354 (394)
..+.++||||...- ..+...++.++|++|+++|........... .++..+.. .+.|++
T Consensus 57 --------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 117 (212)
T 2j0v_A 57 --------VNLGLWDTAGQEDY-----------SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV 117 (212)
T ss_dssp --------EEEEEECCCCCCCC-----------CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE
T ss_pred --------EEEEEEECCCcHHH-----------HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 16789999998431 113344678999999999998722222222 35555543 278999
Q ss_pred EEEecCCccCHH
Q 016165 355 VVLNKADQVDTQ 366 (394)
Q Consensus 355 iv~nK~Dl~~~~ 366 (394)
+|.||+|+.+..
T Consensus 118 lv~nK~Dl~~~~ 129 (212)
T 2j0v_A 118 LVGTKLDLRDDK 129 (212)
T ss_dssp EEEECHHHHTCH
T ss_pred EEEeCHHhhhCc
Confidence 999999986543
No 204
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.14 E-value=9.1e-11 Score=104.28 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=71.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||+|.+++... . ...+.+....... .+.+.+. .
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~~---~-~~~~~t~~~~~~~-----------------~~~~~~~----~--------- 77 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNAF---P-GEYIPTVFDNYSA-----------------NVMVDGK----P--------- 77 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC---C-C-CCCCSEEEEEE-----------------EEECC-C----E---------
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC---C-CCcCCeecceeEE-----------------EEEECCE----E---------
Confidence 899999999999999999998663 1 1122222221110 0001110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHH-HHHHHHhc--CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~-~~l~~l~~--~~~~vii 355 (394)
..+.++||||... -+ .+...++.++|++++++|+.......... .++..+.. .+.|+++
T Consensus 78 -------~~l~i~Dt~G~~~---~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 139 (204)
T 4gzl_A 78 -------VNLGLWDTAGLED---YD--------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 139 (204)
T ss_dssp -------EEEEEEEECCSGG---GT--------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEE
T ss_pred -------EEEEEEECCCchh---hH--------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1556999999832 11 12334578999999999998722222222 34444443 3789999
Q ss_pred EEecCCccCHHH
Q 016165 356 VLNKADQVDTQQ 367 (394)
Q Consensus 356 v~nK~Dl~~~~~ 367 (394)
|.||+|+.+...
T Consensus 140 v~nK~Dl~~~~~ 151 (204)
T 4gzl_A 140 VGTKLDLRDDKD 151 (204)
T ss_dssp EEECHHHHTCHH
T ss_pred EEechhhccchh
Confidence 999999876543
No 205
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.14 E-value=4.1e-11 Score=106.13 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=68.1
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|||||||+|.|++... .....|..+..... ..+.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~---~~~~~~t~~~~~~~-----------------~~~~~~~~------------- 72 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKF---KQDSNHTIGVEFGS-----------------RVVNVGGK------------- 72 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC---------------CCEEE-----------------EEEEETTE-------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC---CccCCCcccceeEE-----------------EEEEECCe-------------
Confidence 3899999999999999999998763 22222222211100 00000110
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vi 354 (394)
-..+.++||||.. +. . .+...++.++|++|+++|+...........++..+. ..+.|++
T Consensus 73 -------~~~l~l~Dt~G~~---~~--~------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 134 (200)
T 2o52_A 73 -------TVKLQIWDTAGQE---RF--R------SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVI 134 (200)
T ss_dssp -------EEEEEEECCTTHH---HH--S------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEE
T ss_pred -------eeEEEEEcCCCcH---hH--H------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 0167899999962 11 1 134567899999999999987222223334444443 3478999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 135 lv~nK~Dl~~ 144 (200)
T 2o52_A 135 LCGNKKDLDP 144 (200)
T ss_dssp EEEECGGGGG
T ss_pred EEEECCCccc
Confidence 9999999854
No 206
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.14 E-value=2e-11 Score=120.61 Aligned_cols=119 Identities=23% Similarity=0.308 Sum_probs=76.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+|+|..|+|||||+|.|++... ..++..++++.+.... .+.+.+.
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~--~~~~~~~gtT~d~~~~-----------------~~~~~~~------------- 82 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNV--SIVSDYAGTTTDPVYK-----------------SMELHPI------------- 82 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC---------------CCCCEE-----------------EEEETTT-------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC--CccCCCCCeeeeeEEE-----------------EEEECCC-------------
Confidence 3899999999999999999999874 4455555554321100 0000000
Q ss_pred hcCCccccccceeecCCCCCc-hhh--hhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLS-GEK--QRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls-Ge~--qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vi 354 (394)
..+.++||||+.. +.. .++. -++..+.++|++|+++|+.. ......+++.+.+.+.|++
T Consensus 83 --------~~l~liDTpG~~d~~~l~~~~~~-------~~~~~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~~~piI 144 (423)
T 3qq5_A 83 --------GPVTLVDTPGLDDVGELGRLRVE-------KARRVFYRADCGILVTDSAP---TPYEDDVVNLFKEMEIPFV 144 (423)
T ss_dssp --------EEEEEEECSSTTCCCTTCCCCHH-------HHHHHHTSCSEEEEECSSSC---CHHHHHHHHHHHHTTCCEE
T ss_pred --------CeEEEEECcCCCcccchhHHHHH-------HHHHHHhcCCEEEEEEeCCC---hHHHHHHHHHHHhcCCCEE
Confidence 1678999999976 211 2233 35667899999999999943 6667788888888899999
Q ss_pred EEEecCCccCHH
Q 016165 355 VVLNKADQVDTQ 366 (394)
Q Consensus 355 iv~nK~Dl~~~~ 366 (394)
+|.||+|+.+.+
T Consensus 145 vV~NK~Dl~~~~ 156 (423)
T 3qq5_A 145 VVVNKIDVLGEK 156 (423)
T ss_dssp EECCCCTTTTCC
T ss_pred EEEeCcCCCCcc
Confidence 999999986543
No 207
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.14 E-value=6.9e-11 Score=111.94 Aligned_cols=136 Identities=18% Similarity=0.117 Sum_probs=79.0
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc------------CCceeeeccCCCCCccc
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI------------PGNTVAVQADMPFSGLT 265 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~------------~~~~~~~~~~~~~~g~~ 265 (394)
.+++|+||||||||||+++|+|... |..++ +.+.+.+.... .+..++.+.....+..+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~--------~~~g~--V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~ 172 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ--------NLGKK--VMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAAL 172 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH--------TTTCC--EEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH--------hcCCE--EEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHH
Confidence 3999999999999999999999983 33333 33344332111 01222222211111111
Q ss_pred ccccccchhhhhhcCCccccccceeecCCCCCc--------hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchH
Q 016165 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS--------GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISD 337 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls--------Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~ 337 (394)
.+.+..... .. -....+.||+|... ..+|++. ++|+++.+|+.+++++|+.. ..
T Consensus 173 v~~~v~~~~--~~------~~d~~llDt~G~~~~~~~~~~eLs~~r~~-------iaRal~~~P~~~lLvLDa~t---~~ 234 (304)
T 1rj9_A 173 AYDAVQAMK--AR------GYDLLFVDTAGRLHTKHNLMEELKKVKRA-------IAKADPEEPKEVWLVLDAVT---GQ 234 (304)
T ss_dssp HHHHHHHHH--HH------TCSEEEECCCCCCTTCHHHHHHHHHHHHH-------HHHHCTTCCSEEEEEEETTB---CT
T ss_pred HHHHHHHHH--hC------CCCEEEecCCCCCCchHHHHHHHHHHHHH-------HHHhhcCCCCeEEEEEcHHH---HH
Confidence 111110000 00 01345789998764 2355666 89999999999999999976 56
Q ss_pred HHHHHHHHHhcC-CCeEEEEEecCCc
Q 016165 338 EFKRVITSLRGH-DDKIRVVLNKADQ 362 (394)
Q Consensus 338 ~~~~~l~~l~~~-~~~viiv~nK~Dl 362 (394)
+..+.++.+.+. +.++++++ |.|-
T Consensus 235 ~~~~~~~~~~~~~~~t~iivT-h~d~ 259 (304)
T 1rj9_A 235 NGLEQAKKFHEAVGLTGVIVT-KLDG 259 (304)
T ss_dssp HHHHHHHHHHHHHCCSEEEEE-CTTS
T ss_pred HHHHHHHHHHHHcCCcEEEEE-CCcc
Confidence 677777777654 66666655 4453
No 208
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.14 E-value=1.4e-10 Score=101.57 Aligned_cols=113 Identities=14% Similarity=0.196 Sum_probs=69.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||+|.+++... .....|+++. .... . ..+.+ ..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~---~~~~~~t~~~-~~~~---------------~--~~~~~----~~--------- 68 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRF---ISEYDPNLED-TYSS---------------E--ETVDH----QP--------- 68 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC---CSCCCTTCCE-EEEE---------------E--EEETT----EE---------
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC---CcccCCCccc-eeeE---------------E--EEECC----EE---------
Confidence 899999999999999999998763 2111222221 1100 0 00000 00
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc------CCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~------~~~~ 352 (394)
..+.++||+|... .+ .+ ..++.++|++++++|+...........++..+.. .+.|
T Consensus 69 -------~~l~i~Dt~G~~~---~~--------~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 129 (187)
T 3c5c_A 69 -------VHLRVMDTADLDT---PR--------NC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP 129 (187)
T ss_dssp -------EEEEEEECCC------CC--------CT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred -------EEEEEEECCCCCc---ch--------hH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 1678999999732 11 02 2467899999999999862223333445554432 4789
Q ss_pred EEEEEecCCccC
Q 016165 353 IRVVLNKADQVD 364 (394)
Q Consensus 353 viiv~nK~Dl~~ 364 (394)
+++|.||+|+.+
T Consensus 130 iilv~nK~Dl~~ 141 (187)
T 3c5c_A 130 ALLLGNKLDMAQ 141 (187)
T ss_dssp EEEEEECGGGGG
T ss_pred EEEEEECcchhh
Confidence 999999999854
No 209
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.14 E-value=7e-11 Score=109.56 Aligned_cols=120 Identities=18% Similarity=0.316 Sum_probs=71.0
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|.+|+|||||+|.|+|... ..++..+.++...... .+.+.+
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~--~~~~~~~~~t~~~~~~-----------------~~~~~~-------------- 83 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQV--VRVSPFQAEGLRPVMV-----------------SRTMGG-------------- 83 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCC--SCCCSSCC-CCCCEEE-----------------EEEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCcceeeEEE-----------------EEEECC--------------
Confidence 3799999999999999999999874 4555555444322110 000111
Q ss_pred hcCCccccccceeecCCCCCch--hhhhhhcccChHHHHHHHh-hcCCEEEEEeCCCCCCchHHHHHHHHHHhc---CC-
Q 016165 278 SQMPHSLLEHITLVDTPGVLSG--EKQRTQRAYDFTGVTSWFA-AKCDLILLLFDPHKLDISDEFKRVITSLRG---HD- 350 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsG--e~qrv~~~~~~~~iaral~-~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~~- 350 (394)
..+.++||||+.+. ......+ .+.+.+. .++|++|+++|............+++.+.+ .+
T Consensus 84 --------~~l~liDTpG~~~~~~~~~~~~~-----~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~ 150 (262)
T 3def_A 84 --------FTINIIDTPGLVEAGYVNHQALE-----LIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEI 150 (262)
T ss_dssp --------EEEEEEECCCSEETTEECHHHHH-----HHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGG
T ss_pred --------eeEEEEECCCCCCcccchHHHHH-----HHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhh
Confidence 16789999999651 1111110 0111111 378999998665432233333445544433 22
Q ss_pred -CeEEEEEecCCcc
Q 016165 351 -DKIRVVLNKADQV 363 (394)
Q Consensus 351 -~~viiv~nK~Dl~ 363 (394)
.++++|.||+|+.
T Consensus 151 ~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 151 WCKTLLVLTHAQFS 164 (262)
T ss_dssp GGGEEEEEECTTCC
T ss_pred hcCEEEEEeCcccC
Confidence 3899999999985
No 210
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.13 E-value=6.5e-11 Score=104.84 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=70.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.|++... .....|+.+.+.... .+.+.+. .
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~----~--------- 56 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTK-----------------EVMVDDR----L--------- 56 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC---CSSCCCCCSEEEEEE-----------------EEESSSC----E---------
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---CCCCCCcccceEEEE-----------------EEEECCE----E---------
Confidence 899999999999999999999773 222233333322110 0001110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc-------CCC
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-------HDD 351 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~-------~~~ 351 (394)
..+.++||||... .+ . +...++.++|++|+++|+...........++..+.. .+.
T Consensus 57 -------~~~~l~Dt~G~~~---~~-~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
T 1vg8_A 57 -------VTMQIWDTAGQER---FQ-S-------LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118 (207)
T ss_dssp -------EEEEEEEECSSGG---GS-C-------SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGS
T ss_pred -------EEEEEEeCCCcHH---HH-H-------hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 1678999999732 11 0 223457899999999999862212223334433321 367
Q ss_pred eEEEEEecCCccC
Q 016165 352 KIRVVLNKADQVD 364 (394)
Q Consensus 352 ~viiv~nK~Dl~~ 364 (394)
|+++|.||+|+.+
T Consensus 119 piilv~nK~Dl~~ 131 (207)
T 1vg8_A 119 PFVVLGNKIDLEN 131 (207)
T ss_dssp CEEEEEECTTSSC
T ss_pred cEEEEEECCCCcc
Confidence 9999999999863
No 211
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.13 E-value=9.2e-11 Score=104.56 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=70.8
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|++|+|||||+|.+++... .....|+.+..... .+.+.+. .
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~-------- 75 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTA------------------SFEIDTQ----R-------- 75 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEE------------------EEESSSS----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCcCCccceeEEE------------------EEEECCE----E--------
Confidence 3899999999999999999999763 22222222211100 0000110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHH-HHHHHHHhc--CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~-~~~l~~l~~--~~~~vi 354 (394)
..+.++||||... -+ .+...++.++|++|+++|+......... ..++..+.+ .+.|++
T Consensus 76 --------~~l~i~Dt~G~~~---~~--------~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~pii 136 (205)
T 1gwn_A 76 --------IELSLWDTSGSPY---YD--------NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML 136 (205)
T ss_dssp --------EEEEEEEECCSGG---GT--------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEE
T ss_pred --------EEEEEEeCCCcHh---hh--------HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE
Confidence 1678999999732 11 1223457899999999999862212222 234444433 368999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 137 lv~nK~Dl~~ 146 (205)
T 1gwn_A 137 LVGCKSDLRT 146 (205)
T ss_dssp EEEECGGGGG
T ss_pred EEEechhhcc
Confidence 9999999864
No 212
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.13 E-value=1.2e-10 Score=102.19 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=69.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|.+|+|||||+|.+++... .....|+.+..... ...+.+. .
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 70 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEI---PTAYVPTVFENFSH------------------VMKYKNE----E--------- 70 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEE------------------EEEETTE----E---------
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC---CCccCCeeeeeeEE------------------EEEECCE----E---------
Confidence 899999999999999999999773 22222222211100 0000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHH-HHHHHHHhc--CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~-~~~l~~l~~--~~~~vii 355 (394)
..+.++||||... -+ .+...++.++|++|+++|+......... ..++..+.. .+.|+++
T Consensus 71 -------~~~~i~Dt~G~~~---~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~il 132 (194)
T 3reg_A 71 -------FILHLWDTAGQEE---YD--------RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 132 (194)
T ss_dssp -------EEEEEEEECCSGG---GT--------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEE
T ss_pred -------EEEEEEECCCcHH---HH--------HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1568999999632 11 1234467899999999999872212221 234444432 3689999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 133 v~nK~Dl~~ 141 (194)
T 3reg_A 133 VGLKVDLRK 141 (194)
T ss_dssp EEECGGGCC
T ss_pred EEEChhhcc
Confidence 999999864
No 213
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.13 E-value=8.2e-11 Score=105.40 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=61.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.|++... .....|.++..... .+.+.+. .
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~~----~--------- 81 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGAF---PESYTPTVFERYMV------------------NLQVKGK----P--------- 81 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEE------------------EEEETTE----E---------
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---CCCCCCccceeEEE------------------EEEECCE----E---------
Confidence 899999999999999999998663 11112222111100 0000010 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHH-HHHHHHhc--CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~-~~l~~l~~--~~~~vii 355 (394)
..+.++||||... |..+...++.++|++|+++|+.......... .++..+.. .+.|+++
T Consensus 82 -------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 143 (214)
T 2j1l_A 82 -------VHLHIWDTAGQDD-----------YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIV 143 (214)
T ss_dssp -------EEEEEEEC--------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEE
T ss_pred -------EEEEEEECCCchh-----------hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1678999999732 1114455688999999999998722222222 34444433 3689999
Q ss_pred EEecCCccCHH
Q 016165 356 VLNKADQVDTQ 366 (394)
Q Consensus 356 v~nK~Dl~~~~ 366 (394)
|.||+|+.+..
T Consensus 144 v~nK~Dl~~~~ 154 (214)
T 2j1l_A 144 VGCKTDLRKDK 154 (214)
T ss_dssp EEECGGGGSCH
T ss_pred EEEChhhhccc
Confidence 99999997644
No 214
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.13 E-value=2.7e-11 Score=107.21 Aligned_cols=118 Identities=20% Similarity=0.219 Sum_probs=50.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCC-cccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPE-PTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~-p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.|+++|++|+|||||+|.|++... ...... |+++.+.. ...+.+.+.. ..
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~~t~~~~~~-----------------~~~~~~~~~~--~~-------- 72 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSKGS--KFLKDYAMTSGVEVV-----------------VAPVTIPDTT--VS-------- 72 (208)
T ss_dssp EEEEC-----------------------------------------------------CEEEECTTSS--EE--------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--cccCCCCCccceEEE-----------------EEEEEECCcc--cE--------
Confidence 899999999999999999998731 111111 11111100 0000011100 00
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc------CCC
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDD 351 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~------~~~ 351 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+.. .+.
T Consensus 73 --------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 133 (208)
T 2yc2_C 73 --------VELFLLDTAGSDL-----------YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL 133 (208)
T ss_dssp --------EEEEEEETTTTHH-----------HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCC
T ss_pred --------EEEEEEECCCcHH-----------HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCC
Confidence 1678999999832 112445567899999999999872222344455655543 478
Q ss_pred eEEEEEecCCccC
Q 016165 352 KIRVVLNKADQVD 364 (394)
Q Consensus 352 ~viiv~nK~Dl~~ 364 (394)
|+++|.||+|+.+
T Consensus 134 piilv~nK~Dl~~ 146 (208)
T 2yc2_C 134 RAVLVANKTDLPP 146 (208)
T ss_dssp EEEEEEECC----
T ss_pred cEEEEEECcccch
Confidence 9999999999865
No 215
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.13 E-value=3.8e-10 Score=97.36 Aligned_cols=106 Identities=22% Similarity=0.317 Sum_probs=68.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||+|.+++... .. ..|+.+..... .+.+.+. .
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~--~~--~~~t~~~~~~~------------------~~~~~~~----~--------- 53 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSY--QV--LEKTESEQYKK------------------EMLVDGQ----T--------- 53 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCC--CC--CSSCSSSEEEE------------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC--cCCCcceeEEE------------------EEEECCE----E---------
Confidence 899999999999999999999774 21 22322211100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHH---HHHHHhc---CCCe
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKR---VITSLRG---HDDK 352 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~---~l~~l~~---~~~~ 352 (394)
..+.++||||... ..+++++|++|+++|............ ++..+.. .+.|
T Consensus 54 -------~~l~i~Dt~G~~~----------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 110 (178)
T 2iwr_A 54 -------HLVLIREEAGAPD----------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA 110 (178)
T ss_dssp -------EEEEEEECSSSCC----------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE
T ss_pred -------EEEEEEECCCCch----------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 1578899999732 135688999999999987222233333 3444433 3679
Q ss_pred EEEEEecCCc
Q 016165 353 IRVVLNKADQ 362 (394)
Q Consensus 353 viiv~nK~Dl 362 (394)
+++|.||+|+
T Consensus 111 iilv~nK~Dl 120 (178)
T 2iwr_A 111 LALVGTQDRI 120 (178)
T ss_dssp EEEEEECTTC
T ss_pred EEEEEECccc
Confidence 9999999998
No 216
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.12 E-value=2.9e-10 Score=99.37 Aligned_cols=107 Identities=19% Similarity=0.257 Sum_probs=69.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||+|.+++... .....|..+.... .+.+.+. .
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~---~~~~~~t~~~~~~-------------------~~~~~~~----~--------- 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTY---VQEESPEGGRFKK-------------------EIVVDGQ----S--------- 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSC---CCCCCTTCEEEEE-------------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCcCCCcceEEE-------------------EEEECCE----E---------
Confidence 899999999999999999998763 2212222111000 0001110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcC----CCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH----DDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~----~~~vi 354 (394)
..+.++||+|... .+ ++.++|++++++|+........+..++..+... +.|++
T Consensus 67 -------~~l~i~Dt~G~~~---~~-------------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 123 (184)
T 3ihw_A 67 -------YLLLIRDEGGPPE---LQ-------------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV 123 (184)
T ss_dssp -------EEEEEEECSSSCC---HH-------------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEE
T ss_pred -------EEEEEEECCCChh---hh-------------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1567899999832 11 467899999999998733233445566666542 56999
Q ss_pred EEEecCCcc
Q 016165 355 VVLNKADQV 363 (394)
Q Consensus 355 iv~nK~Dl~ 363 (394)
+|.||+|+.
T Consensus 124 lv~nK~Dl~ 132 (184)
T 3ihw_A 124 LVGTQDAIS 132 (184)
T ss_dssp EEEECTTCB
T ss_pred EEEECcccc
Confidence 999999983
No 217
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.12 E-value=2.3e-11 Score=117.11 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=76.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+|+|.+|||||||+|.|++.. ..++..|.++..... .. +.+.+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~---~~i~~~~ftTl~p~~------------g~-----v~~~~~-------------- 205 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK---PKIADYHFTTLVPNL------------GM-----VETDDG-------------- 205 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC---CEESSTTSSCCCCCE------------EE-----EECSSS--------------
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC---CccccCCccccCceE------------EE-----EEeCCC--------------
Confidence 69999999999999999999876 444555555432110 00 000110
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHH---HhhcCCEEEEEeCCCC---CCchHHHHHHHHHHhc----
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSW---FAAKCDLILLLFDPHK---LDISDEFKRVITSLRG---- 348 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iara---l~~~~dllLl~lD~~~---~~~~~~~~~~l~~l~~---- 348 (394)
..+.++||||+..+..+... +... .+.+++++|+++|++. .........++.++..
T Consensus 206 -------~~~~l~DtPG~i~~a~~~~~-------l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~ 271 (342)
T 1lnz_A 206 -------RSFVMADLPGLIEGAHQGVG-------LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR 271 (342)
T ss_dssp -------CEEEEEEHHHHHHHTTCTTT-------THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS
T ss_pred -------ceEEEecCCCCcccccccch-------hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhh
Confidence 26789999997542111111 2222 2466999999999975 3344555556666654
Q ss_pred -CCCeEEEEEecCCccCHH
Q 016165 349 -HDDKIRVVLNKADQVDTQ 366 (394)
Q Consensus 349 -~~~~viiv~nK~Dl~~~~ 366 (394)
.+.|+++|.||+|+.+.+
T Consensus 272 l~~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 272 LTERPQIIVANKMDMPEAA 290 (342)
T ss_dssp TTTSCBCBEEECTTSTTHH
T ss_pred hcCCCEEEEEECccCCCCH
Confidence 367999999999997654
No 218
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.12 E-value=1.1e-10 Score=101.98 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=70.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCC-CcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP-EPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~-~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+|+|+|++|||||||+|.+++... ...+. .|+.+.+..... +.+.... ..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~--~~~~~~~~t~g~~~~~~~-----------------~~~~~~~-~~--------- 54 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK--SDLGMQSATVGIDVKDWP-----------------IQIRDKR-KR--------- 54 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEE-----------------C------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--ccCCCcceeccEEeEEee-----------------eccccCC-CC---------
Confidence 699999999999999999999642 22221 222222211100 0000000 00
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCC-CchHHHHHHHHHHhc--CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL-DISDEFKRVITSLRG--HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~-~~~~~~~~~l~~l~~--~~~~vi 354 (394)
-..+.++||+|.. +-+ .+...++.+++++++++|.+.. .....+..++..+.. .+.|++
T Consensus 55 -------~~~~~i~Dt~G~~---~~~--------~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~pii 116 (184)
T 2zej_A 55 -------DLVLNVWDFAGRE---EFY--------STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI 116 (184)
T ss_dssp --------CEEEEEEECSHH---HHH--------TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEE
T ss_pred -------ceEEEEEecCCCH---HHH--------HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEE
Confidence 0267899999962 211 1334567889999999998762 112234455555543 368999
Q ss_pred EEEecCCccCHHHH
Q 016165 355 VVLNKADQVDTQQL 368 (394)
Q Consensus 355 iv~nK~Dl~~~~~~ 368 (394)
+|.||+|+.+....
T Consensus 117 lv~nK~Dl~~~~~~ 130 (184)
T 2zej_A 117 LVGTHLDVSDEKQR 130 (184)
T ss_dssp EEEECGGGCCHHHH
T ss_pred EEEECCCcccchhh
Confidence 99999999765544
No 219
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.12 E-value=2.1e-12 Score=115.76 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=74.8
Q ss_pred CcccccCCCCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCccc
Q 016165 186 SPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLT 265 (394)
Q Consensus 186 ~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 265 (394)
+.+++++ ..+.+++|+||||||||||+++|+|. .| ..+... . ..+. ...........++++.. ...+.
T Consensus 13 ~~~l~~i--~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~--~-~~~~--~~~~~~~~~ig~v~q~~--~enl~ 80 (208)
T 3b85_A 13 KHYVDAI--DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVS--R-IILT--RPAVEAGEKLGFLPGTL--NEKID 80 (208)
T ss_dssp HHHHHHH--HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCS--E-EEEE--ECSCCTTCCCCSSCC--------C
T ss_pred HHHHHhc--cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeee--e-EEec--CCchhhhcceEEecCCH--HHHHH
Confidence 4577775 34459999999999999999999999 64 111110 0 0111 11001111222333321 00010
Q ss_pred ccccccchhh---hhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHH
Q 016165 266 TFGTAFLSKF---ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRV 342 (394)
Q Consensus 266 ~~~~~~~~~~---~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~ 342 (394)
.+........ ...+.+.++++ . |. ||+||+. +||+++.+|+++|+-=... +....+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~------~-gl--Gq~qrv~-------lAraL~~~p~lllLDEPts--~~~~~l~~~ 142 (208)
T 3b85_A 81 PYLRPLHDALRDMVEPEVIPKLME------A-GI--VEVAPLA-------YMRGRTLNDAFVILDEAQN--TTPAQMKMF 142 (208)
T ss_dssp TTTHHHHHHHTTTSCTTHHHHHHH------T-TS--EEEEEGG-------GGTTCCBCSEEEEECSGGG--CCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH------h-CC--chHHHHH-------HHHHHhcCCCEEEEeCCcc--ccHHHHHHH
Confidence 0000000000 00111112222 2 33 9999999 9999999999999722111 137778888
Q ss_pred HHHHhcCCCeEEEEEec
Q 016165 343 ITSLRGHDDKIRVVLNK 359 (394)
Q Consensus 343 l~~l~~~~~~viiv~nK 359 (394)
++.+ +.+.++| ++|.
T Consensus 143 l~~l-~~g~tii-vtHd 157 (208)
T 3b85_A 143 LTRL-GFGSKMV-VTGD 157 (208)
T ss_dssp HTTB-CTTCEEE-EEEC
T ss_pred HHHh-cCCCEEE-EECC
Confidence 8877 5577777 8843
No 220
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.11 E-value=6.7e-11 Score=104.24 Aligned_cols=117 Identities=20% Similarity=0.181 Sum_probs=67.7
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|.+|+|||||+|.++|... ..++..+.++.+.... .+.+.+. .
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~----~--------- 55 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVHD--SMDSDXEVLGEDTYER-----------------TLMVDGE----S--------- 55 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSC--CC----GGGCTTEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC--CcCccccccceeEEEE-----------------EEEECCe----E---------
Confidence 799999999999999999998653 3344333333322110 0001110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh----cCCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~----~~~~~vi 354 (394)
..+.++||+|.- ++... +...+.+.++.+++++|............++..+. ..+.|++
T Consensus 56 -------~~l~~~Dt~~~~-~~~~~---------~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pii 118 (192)
T 2cjw_A 56 -------ATIILLDMWENK-GENEW---------LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118 (192)
T ss_dssp -------EEEEEECCCCC-----CT---------TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred -------EEEEEEEeccCc-chhhh---------HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEE
Confidence 145678998862 21111 23446778999999999876222223333333332 2378999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 119 lV~NK~Dl~~ 128 (192)
T 2cjw_A 119 LVGNKSDLVR 128 (192)
T ss_dssp EEEECTTCGG
T ss_pred EEEechhhhc
Confidence 9999999854
No 221
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.11 E-value=6.5e-11 Score=104.52 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=67.6
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|+|||||+|.+++... ... .+.|+...... .+.+.+. .
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~~---~~~-~~~t~~~~~~~-----------------~~~~~~~----~--------- 67 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNGY---PTE-YIPTAFDNFSA-----------------VVSVDGR----P--------- 67 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC------------CCSSEEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCC-CCCcccceeEE-----------------EEEECCE----E---------
Confidence 899999999999999999998662 111 22222221100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHH-HHHHHHhc--CCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~-~~l~~l~~--~~~~vii 355 (394)
..+.++||||... -+ .+.+.++.++|++|+++|+.......... .++..+.. .+.|+++
T Consensus 68 -------~~~~i~Dt~G~~~---~~--------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~il 129 (201)
T 2q3h_A 68 -------VRLQLCDTAGQDE---FD--------KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIIL 129 (201)
T ss_dssp -------EEEEEEECCCSTT---CS--------SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEE
T ss_pred -------EEEEEEECCCCHH---HH--------HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1567999999843 00 02234578999999999998722222222 34444443 3789999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 130 v~nK~Dl~~ 138 (201)
T 2q3h_A 130 VGTQSDLRE 138 (201)
T ss_dssp EEECGGGGG
T ss_pred EEECHhhhh
Confidence 999999864
No 222
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.10 E-value=1.6e-10 Score=104.06 Aligned_cols=116 Identities=23% Similarity=0.326 Sum_probs=72.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|.+|+|||||++.+..... .....|+.+.+... .. ....+. .
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f---~~~~~~Tig~d~~~-------------k~----~~~~~~----~--------- 61 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSF---DNTYQATIGIDFLS-------------KT----MYLEDR----T--------- 61 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC---C----------CEE-------------EE----EECSSC----E---------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCC---CCCcCCccceEEEE-------------EE----EEecce----E---------
Confidence 799999999999999999997663 22222332221100 00 000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vii 355 (394)
-.+.||||+|.-. |..+...++++++++|+++|.........+..++..+. ..+.|+++
T Consensus 62 -------v~l~iwDtaGqe~-----------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piil 123 (216)
T 4dkx_A 62 -------IRLQLWDTAGLER-----------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 123 (216)
T ss_dssp -------EEEEEECCSCTTT-----------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEE
T ss_pred -------EEEEEEECCCchh-----------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 1678999999732 22366788999999999999987333344445555543 34679999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 124 VgNK~Dl~~~ 133 (216)
T 4dkx_A 124 VGNKTDLADK 133 (216)
T ss_dssp EEECTTCGGG
T ss_pred EeeccchHhc
Confidence 9999998653
No 223
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.10 E-value=6.2e-11 Score=102.55 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=67.8
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|++|+|||||+|.+.+... .....|+++. .. ...+.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~---~~~~~~t~~~-~~-----------------~~~~~~~~~------------- 54 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTF---PTDYVPTVFD-NF-----------------SANVVVNGA------------- 54 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCC---C-----------C-----------------BCCCC-----------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCeeee-eE-----------------EEEEEECCE-------------
Confidence 3899999999999999999998663 1111111110 00 000111110
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHH-HHHHHHhc--CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~-~~l~~l~~--~~~~vi 354 (394)
-..+.++||||...- + .+...++.++|++++++|+.......... .++..+.. .+.|++
T Consensus 55 -------~~~~~i~Dt~G~~~~---~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 116 (182)
T 3bwd_D 55 -------TVNLGLWDTAGQEDY---N--------RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV 116 (182)
T ss_dssp ----------CEEECCCC-CTT---T--------TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE
T ss_pred -------EEEEEEEECCCChhh---h--------hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 015679999997431 0 12334578999999999997622222222 34444443 378999
Q ss_pred EEEecCCccCHHH
Q 016165 355 VVLNKADQVDTQQ 367 (394)
Q Consensus 355 iv~nK~Dl~~~~~ 367 (394)
+|.||+|+.+...
T Consensus 117 lv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 117 LVGTKLDLRDDKQ 129 (182)
T ss_dssp EEEECHHHHTCHH
T ss_pred EEEechhhhcCcc
Confidence 9999999865433
No 224
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.10 E-value=1.6e-11 Score=108.57 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=70.0
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|++|||||||+|.|++... .....|..+...... .+.+.+. .
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~----~--------- 81 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKIR-----------------TIELDGK----T--------- 81 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCCC---CCHHHHHHCCSEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCcCCcccceEEEE-----------------EEEECCE----E---------
Confidence 899999999999999999998662 222233333221100 0000110 0
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcC---CCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH---DDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~---~~~vii 355 (394)
..+.++||||...- .. +...++.++|++|+++|+...........++..+... +.|+++
T Consensus 82 -------~~~~i~Dt~G~~~~--~~---------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~il 143 (199)
T 3l0i_B 82 -------IKLQIWDTAGQERF--RT---------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 143 (199)
T ss_dssp -------EEEEEECCTTCTTC--CC---------CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEE
T ss_pred -------EEEEEEECCCcHhH--HH---------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 15789999997431 01 2234578999999999998743334455666666543 679999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 144 v~nK~Dl~~~ 153 (199)
T 3l0i_B 144 VGNKCDLTTK 153 (199)
T ss_dssp C-CCSSCC--
T ss_pred EEECccCCcc
Confidence 9999998643
No 225
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.10 E-value=5.4e-11 Score=106.50 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=69.4
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+++|.+|||||||+|.|++... .....+..+....... ... ..+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~-------------~~~---~~~~-------------- 59 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGRF---EKNYNATVGAVNHPVT-------------FLD---DQGN-------------- 59 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCST---TCEEETTTTEEEEEEE-------------EEB---TTSC--------------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeeEEEE-------------EEe---CCCc--------------
Confidence 899999999999999999997663 1111111111110000 000 0000
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH---hcCCCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l---~~~~~~vii 355 (394)
...+.++||||... .+ . +...++.++|++|+++|+...........++..+ ...+.|+++
T Consensus 60 ------~~~~~l~Dt~G~~~---~~-~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 122 (218)
T 4djt_A 60 ------VIKFNVWDTAGQEK---KA-V-------LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122 (218)
T ss_dssp ------EEEEEEEEECSGGG---TS-C-------CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEE
T ss_pred ------EEEEEEEecCCchh---hc-h-------HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 01578999999732 11 1 3345688999999999998722222233333333 344689999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 123 v~nK~Dl~~~ 132 (218)
T 4djt_A 123 CANKIDIKNR 132 (218)
T ss_dssp EEECTTCC--
T ss_pred EEECCCCccc
Confidence 9999998764
No 226
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.10 E-value=2e-10 Score=116.15 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=73.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+|+|.+|||||||+|.|++... . ...|+.+..... +.+.+.
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~~--~--~~~~T~~~~~~~-------------------~~~~~~-------------- 366 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQS--V--TTIPTVGFNVET-------------------VTYKNV-------------- 366 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC--C--CCCCCSSEEEEE-------------------EESSSC--------------
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--C--CcCCccceeEEE-------------------EEeCCE--------------
Confidence 899999999999999999999773 2 222322221110 111122
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
.+.++||||...-. .+.+.++.++|++|+++|++..........++..+.+ .+.|++
T Consensus 367 --------~~~l~Dt~G~~~~~-----------~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 427 (497)
T 3lvq_E 367 --------KFNVWDVGGQDKIR-----------PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL 427 (497)
T ss_dssp --------EEEEEEECCCGGGS-----------GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred --------EEEEEECCCcHHHH-----------HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEE
Confidence 77899999974311 1234467999999999999873334444455555533 478999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
+|.||+|+.+
T Consensus 428 lv~NK~Dl~~ 437 (497)
T 3lvq_E 428 IFANKQDLPD 437 (497)
T ss_dssp EEEECCSSSS
T ss_pred EEEECCCCCc
Confidence 9999999964
No 227
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.09 E-value=3.8e-10 Score=109.21 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=47.8
Q ss_pred ccceeecCCCCCch----hhhhhhcccChHHHHHHHhhcCC-EEEEEeCCCCCCchH-HHHHHHHHHhcCCCeEEEEEec
Q 016165 286 EHITLVDTPGVLSG----EKQRTQRAYDFTGVTSWFAAKCD-LILLLFDPHKLDISD-EFKRVITSLRGHDDKIRVVLNK 359 (394)
Q Consensus 286 ~~~~l~Dt~g~lsG----e~qrv~~~~~~~~iaral~~~~d-llLl~lD~~~~~~~~-~~~~~l~~l~~~~~~viiv~nK 359 (394)
..+.++||||+... +...+.. .+..+...++.+++ ++|+++|+.. +... ...++++.+...+.++++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~iiL~v~~a~~-~~~~~~~~~i~~~~~~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEF--QIRDMLMQFVTKENCLILAVSPANS-DLANSDALKVAKEVDPQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHH--HHHHHHHHHHTSTTEEEEEEEETTS-CGGGCHHHHHHHHHCTTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHH--HHHHHHHHHHcCCCeEEEEEecCCC-ccchhHHHHHHHHhCcCCCceEEEecc
Confidence 36789999998651 1111000 01225566776665 5555677654 3332 2345778887778999999999
Q ss_pred CCccCH
Q 016165 360 ADQVDT 365 (394)
Q Consensus 360 ~Dl~~~ 365 (394)
+|+.+.
T Consensus 207 ~Dl~~~ 212 (353)
T 2x2e_A 207 LDLMDE 212 (353)
T ss_dssp GGGSCT
T ss_pred ccccCc
Confidence 998654
No 228
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.09 E-value=5.6e-11 Score=106.79 Aligned_cols=114 Identities=20% Similarity=0.185 Sum_probs=70.8
Q ss_pred EEEEeecCCCchhHHHHH-HHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKH-LLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~-L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
+|+++|.+|||||||+|. +.+... ......++++.....+. ....+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~--~~~~~t~~~~~~~~~~~-----------------~~~~~-------------- 63 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLVFH-----------------TNRGP-------------- 63 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHT--CEEETTTTEEEEEEEEE-----------------ETTEE--------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEE-----------------ECCEE--------------
Confidence 899999999999999999 444432 22222333222221100 00001
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc--CCCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~--~~~~vii 355 (394)
..+.++||||... -+ .+...++.++|++|+++|+...........++..+.+ .+.|+++
T Consensus 64 --------~~~~i~Dt~G~~~---~~--------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~il 124 (221)
T 3gj0_A 64 --------IKFNVWDTAGQEK---FG--------GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVL 124 (221)
T ss_dssp --------EEEEEEEECSGGG---TS--------CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEE
T ss_pred --------EEEEEEeCCChHH---Hh--------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1678999999632 11 1335678899999999999872222223345554443 3789999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 125 v~nK~Dl~~ 133 (221)
T 3gj0_A 125 CGNKVDIKD 133 (221)
T ss_dssp EEECTTSSS
T ss_pred EEECCcccc
Confidence 999999864
No 229
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.09 E-value=1.5e-10 Score=102.35 Aligned_cols=116 Identities=23% Similarity=0.291 Sum_probs=69.2
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+|+|+||||||||+|.|+|... .....|..+..... ..+.+.|. .
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~---~~~~~~t~~~~~~~-----------------~~i~~~g~----~-------- 53 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF---NLESKSTIGVEFAT-----------------RSIQVDGK----T-------- 53 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC---CC---CCCSCEEEE-----------------EEEEETTE----E--------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC---CCCCCCccceeEEE-----------------EEEEECCE----E--------
Confidence 3799999999999999999999873 22222322211100 00001110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vi 354 (394)
-.+.++|++|... .+ . +...+.++++.+++++|............++..+. ..+.+++
T Consensus 54 --------~~~~i~Dt~g~~~---~~-~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~ 114 (199)
T 2f9l_A 54 --------IKAQIWDTAGQER---YR-R-------ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 114 (199)
T ss_dssp --------EEEEEEECSSGGG---TT-C-------CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEECCCchh---hh-h-------hhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 1457899999622 11 1 23456789999999999876211222233444443 2467999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
++.||+|+.+
T Consensus 115 ~v~nK~Dl~~ 124 (199)
T 2f9l_A 115 LVGNKSDLRH 124 (199)
T ss_dssp EEEECTTCGG
T ss_pred EEEECccccc
Confidence 9999999854
No 230
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.07 E-value=6.8e-11 Score=103.29 Aligned_cols=79 Identities=6% Similarity=-0.014 Sum_probs=45.6
Q ss_pred CCCCCc-hhhhhhhcccChHHHHHH-----HhhcCCEEEEEe-CCCCCCchHHHHH-HHHHHhcCCCeEEEEEecCCccC
Q 016165 293 TPGVLS-GEKQRTQRAYDFTGVTSW-----FAAKCDLILLLF-DPHKLDISDEFKR-VITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 293 t~g~ls-Ge~qrv~~~~~~~~iara-----l~~~~dllLl~l-D~~~~~~~~~~~~-~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.++.+| ||+||+. +|++ ++.+|+++|+-= ++.. .......+ +.+.+.+.+.++++++|+ .|+
T Consensus 73 ~~~~lSgG~~qr~~-------la~aa~~~~l~~~p~llilDEigp~~-~ld~~~~~~l~~~l~~~~~~~i~~~H~--~h~ 142 (178)
T 1ye8_A 73 YGVNVQYFEELAIP-------ILERAYREAKKDRRKVIIIDEIGKME-LFSKKFRDLVRQIMHDPNVNVVATIPI--RDV 142 (178)
T ss_dssp EEECHHHHHHHHHH-------HHHHHHHHHHHCTTCEEEECCCSTTG-GGCHHHHHHHHHHHTCTTSEEEEECCS--SCC
T ss_pred cccCcCHHHHHHHH-------HHhhccccccccCCCEEEEeCCCCcc-cCCHHHHHHHHHHHhcCCCeEEEEEcc--CCC
Confidence 455678 8999999 9996 899999988721 1221 12222233 333344445567888862 255
Q ss_pred HHHHHHHHhHhhhccceeee
Q 016165 365 TQQLMRVYGALMWSLGKVLN 384 (394)
Q Consensus 365 ~~~~~~~~~~~~~~~G~i~~ 384 (394)
...+..+ .-..+|+++.
T Consensus 143 ~~~~~~i---~~r~~~~i~~ 159 (178)
T 1ye8_A 143 HPLVKEI---RRLPGAVLIE 159 (178)
T ss_dssp SHHHHHH---HTCTTCEEEE
T ss_pred chHHHHH---HhcCCcEEEE
Confidence 5555543 1124466654
No 231
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.05 E-value=3.5e-10 Score=108.46 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=70.9
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
+|+|+|.+|+|||||+|.|.+... +...|+.+..... +...+
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~----~~~~pT~~~~~~~-------------------~~~~~--------------- 208 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVET-------------------VEYKN--------------- 208 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC----EEEEEETTEEEEE-------------------EEETT---------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC----CCcccccceEEEE-------------------EecCc---------------
Confidence 899999999999999999987662 1112322211110 00011
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc----CCCeEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~----~~~~vi 354 (394)
..+.++||||... |..+...++.++|++|+++|+...........++..+.. .+.|++
T Consensus 209 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii 270 (329)
T 3o47_A 209 -------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 270 (329)
T ss_dssp -------EEEEEEECC----------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred -------EEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEE
Confidence 1678999999632 111456678999999999999764444455544444432 378999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 271 lV~NK~Dl~~~ 281 (329)
T 3o47_A 271 VFANKQDLPNA 281 (329)
T ss_dssp EEEECTTSTTC
T ss_pred EEEECccCCcc
Confidence 99999998654
No 232
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.03 E-value=1.1e-09 Score=107.90 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=51.8
Q ss_pred ccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCC-CeEEEEEecCCccC
Q 016165 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHD-DKIRVVLNKADQVD 364 (394)
Q Consensus 286 ~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~-~~viiv~nK~Dl~~ 364 (394)
..+.++||||+.. |.......+..+|++|+++|+.......+..+++..+...+ .++++++||+|+.+
T Consensus 75 ~~~~iiDtPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 75 RRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS 143 (403)
T ss_dssp EEEEEEECCCCGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ceEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc
Confidence 3778999999833 12244556789999999999987332555556655554434 48999999999987
Q ss_pred HHHHH
Q 016165 365 TQQLM 369 (394)
Q Consensus 365 ~~~~~ 369 (394)
.++..
T Consensus 144 ~~~~~ 148 (403)
T 3sjy_A 144 KEEAL 148 (403)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 76543
No 233
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.03 E-value=7.7e-10 Score=110.17 Aligned_cols=66 Identities=26% Similarity=0.305 Sum_probs=47.5
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCch-------HHHHHHHHHHhcCCCe-EEEEEe
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDIS-------DEFKRVITSLRGHDDK-IRVVLN 358 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~-------~~~~~~l~~l~~~~~~-viiv~n 358 (394)
.+.++||||+.. |...+...+..+|++|+++|+.. +.. .+..+.+..+...+.+ +++++|
T Consensus 96 ~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~-g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviN 163 (439)
T 3j2k_7 96 HFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARK-GEFETGFEKGGQTREHAMLAKTAGVKHLIVLIN 163 (439)
T ss_pred EEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCC-CccccccCCCchHHHHHHHHHHcCCCeEEEEee
Confidence 788999999843 11234456789999999999976 221 3455566666666777 999999
Q ss_pred cCCccC
Q 016165 359 KADQVD 364 (394)
Q Consensus 359 K~Dl~~ 364 (394)
|+|+.+
T Consensus 164 K~Dl~~ 169 (439)
T 3j2k_7 164 KMDDPT 169 (439)
T ss_pred cCCCcc
Confidence 999853
No 234
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.02 E-value=4.4e-10 Score=107.71 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=83.2
Q ss_pred ccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCccc
Q 016165 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLT 265 (394)
Q Consensus 188 ~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 265 (394)
+++++++.+.+ .++|+|+||||||||+|+|+|... |..+. +.+.+...- .+...
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--------~~~g~--i~i~~~~e~-------------~~~~~- 215 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--------KEERI--ISIEDTEEI-------------VFKHH- 215 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--------TTSCE--EEEESSCCC-------------CCSSC-
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--------CCCcE--EEECCeecc-------------ccccc-
Confidence 67777777655 899999999999999999999983 33333 333332110 00000
Q ss_pred ccccccchhhhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHH
Q 016165 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITS 345 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~ 345 (394)
. ..+.+.. | .|++|++. +++++..+|+++|+ |-.. ..+..++++.
T Consensus 216 --~-----------------~~i~~~~--g--gg~~~r~~-------la~aL~~~p~ilil--dE~~---~~e~~~~l~~ 260 (330)
T 2pt7_A 216 --K-----------------NYTQLFF--G--GNITSADC-------LKSCLRMRPDRIIL--GELR---SSEAYDFYNV 260 (330)
T ss_dssp --S-----------------SEEEEEC--B--TTBCHHHH-------HHHHTTSCCSEEEE--CCCC---STHHHHHHHH
T ss_pred --h-----------------hEEEEEe--C--CChhHHHH-------HHHHhhhCCCEEEE--cCCC---hHHHHHHHHH
Confidence 0 0122221 1 46899999 99999999999986 3222 1345677877
Q ss_pred HhcCCCeEEEEEecCCccCHHHHHHHHhHhhhccce
Q 016165 346 LRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (394)
Q Consensus 346 l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~ 381 (394)
+...+.++++++ |.......+++++.+..|.
T Consensus 261 ~~~g~~tvi~t~-----H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 261 LCSGHKGTLTTL-----HAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHTTCCCEEEEE-----ECSSHHHHHHHHHHHHHTS
T ss_pred HhcCCCEEEEEE-----cccHHHHHhhhheehhcCC
Confidence 765444678888 4444333448888888776
No 235
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.02 E-value=6.1e-11 Score=114.08 Aligned_cols=48 Identities=19% Similarity=0.040 Sum_probs=38.4
Q ss_pred cCCceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhcc
Q 016165 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
++..++++.|+. ..++++++++++. +++|+|+||||||||+|+|+|..
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344444556654 4588999987766 99999999999999999999987
No 236
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.01 E-value=7.9e-10 Score=112.41 Aligned_cols=66 Identities=27% Similarity=0.369 Sum_probs=51.5
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.+.++||||+.+ |.......+..+|.+|+++|+.. +...+...+++.+...+.|+++++||+|+..
T Consensus 83 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 83 LVNLLDTPGHED-----------FSEDTYRTLTAVDCCLMVIDAAK-GVEDRTRKLMEVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp EEEEECCCCSTT-----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred EEEEEECCCChh-----------HHHHHHHHHHHCCEEEEEEeCCc-cchHHHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence 678999999954 11133445789999999999986 4566667777777777899999999999864
No 237
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.00 E-value=4.9e-10 Score=98.48 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=69.6
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+|+|+||||||||+|.++|... .....|+.+..... ..+.+.|. .
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~---~~~~~~t~~~~~~~-----------------~~i~~~g~----~-------- 77 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF---NLESKSTIGVEFAT-----------------RSIQVDGK----T-------- 77 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC---CCSCCCCCSEEEEE-----------------EEEEETTE----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC---CCCCCCccceEEEE-----------------EEEEECCE----E--------
Confidence 4899999999999999999999884 22223333221100 00001110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHh---cCCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~---~~~~~vi 354 (394)
-.+.++|++|... . .. +...+.++++.+++++|.........+..++..+. ....+++
T Consensus 78 --------~~~~i~Dt~g~~~---~-~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~ 138 (191)
T 1oix_A 78 --------IKAQIWDTAGLER---Y-RA-------ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 138 (191)
T ss_dssp --------EEEEEEEECSCCS---S-SC-------CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEECCCCcc---h-hh-------hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 0446799999743 1 11 22345688999999999876211122233444433 3467999
Q ss_pred EEEecCCccC
Q 016165 355 VVLNKADQVD 364 (394)
Q Consensus 355 iv~nK~Dl~~ 364 (394)
++.||+|+.+
T Consensus 139 ~v~nK~Dl~~ 148 (191)
T 1oix_A 139 LVGNKSDLRH 148 (191)
T ss_dssp EEEECGGGGG
T ss_pred EEEECccccc
Confidence 9999999854
No 238
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.56 E-value=3.6e-11 Score=106.61 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=70.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
.|+++|++|||||||+|.+++... .....|.+ .... ...+.+.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~-~~~~-----------------~~~~~~~~~-------------- 76 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTV-FDNY-----------------SANVMVDGK-------------- 76 (204)
Confidence 899999999999999999987652 11111111 1100 000001110
Q ss_pred cCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHH-HHHHHHhcC--CCeEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRGH--DDKIRV 355 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~-~~l~~l~~~--~~~vii 355 (394)
-..+.++||||... |..+.+.++.++|++|+++|+.......... .++..+... +.|+++
T Consensus 77 ------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piil 139 (204)
T 3th5_A 77 ------PVNLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 139 (204)
Confidence 01567999999743 1114456788999999999987632233332 445555443 679999
Q ss_pred EEecCCccCH
Q 016165 356 VLNKADQVDT 365 (394)
Q Consensus 356 v~nK~Dl~~~ 365 (394)
|.||+|+.+.
T Consensus 140 v~NK~Dl~~~ 149 (204)
T 3th5_A 140 VGTKLDLRDD 149 (204)
Confidence 9999998653
No 239
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.00 E-value=4.2e-10 Score=110.49 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=20.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCccccee
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRF 236 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~ 236 (394)
.|+|+|.+|||||||+|+|++.. +.++..|.+|+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~---~~~~~~p~tT~~ 36 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD---VEIANYPFTTIE 36 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---CcccCCCCcccC
Confidence 58999999999999999999987 677778877764
No 240
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.00 E-value=1.9e-10 Score=116.64 Aligned_cols=114 Identities=22% Similarity=0.343 Sum_probs=78.2
Q ss_pred ccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCC-Ccccccccccchhh
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPF-SGLTTFGTAFLSKF 275 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 275 (394)
.++|+++|.+|+|||||+|.|.+... .....+++|.... ...+.+ .+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~---~~~~~~giT~~i~-----------------~~~v~~~~g------------ 51 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQV---AAMEAGGITQHIG-----------------AFLVSLPSG------------ 51 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHH---HHSSSCCBCCCTT-----------------SCCBCSSCS------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc---ccccCCceeEEEe-----------------EEEEEeCCC------------
Confidence 45899999999999999999998762 2222333333110 000001 01
Q ss_pred hhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEE
Q 016165 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (394)
Q Consensus 276 ~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vii 355 (394)
..+.++||||+..-.. +....+..+|++|+++|+.. +...+..+.+..+...+.|+++
T Consensus 52 ----------~~i~~iDTPGhe~f~~-----------~~~~~~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~~~vPiIV 109 (537)
T 3izy_P 52 ----------EKITFLDTPGHAAFSA-----------MRARGTQVTDIVILVVAADD-GVMKQTVESIQHAKDAHVPIVL 109 (537)
T ss_dssp ----------SCCBCEECSSSCCTTT-----------SBBSSSBSBSSCEEECBSSS-CCCHHHHHHHHHHHTTTCCEEE
T ss_pred ----------CEEEEEECCChHHHHH-----------HHHHHHccCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEEE
Confidence 2678999999854101 11123578999999999986 5567777888888888899999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
+.||+|+.+
T Consensus 110 ViNKiDl~~ 118 (537)
T 3izy_P 110 AINKCDKAE 118 (537)
T ss_dssp CCBSGGGTT
T ss_pred EEecccccc
Confidence 999999854
No 241
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.00 E-value=1.6e-09 Score=113.60 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=84.2
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCccc--cccccc--ch
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLT--TFGTAF--LS 273 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~--~~ 273 (394)
|.|+++|..+||||||+|+|+|... .+.+..+.|.+..+.........+. ......+.. .+.... +.
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~--LP~g~g~~Tr~Pl~l~l~~~~~~~~-------~~l~~~~~~~~~~~~v~~~I~ 122 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDF--LPRGSGIVTRRPLVLQLVNSTTEYA-------EFLHCKGKKFTDFEEVRLEIE 122 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCC--SCCSSSCSCSSCEEEEEEECSSCEE-------ECSTTTTCCBCCHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc--cCcCCccccccceEEEeecCCcchh-------heeccCCcccCCHHHHHHHHH
Confidence 5899999999999999999999875 4555445444432221111000000 000000000 000000 00
Q ss_pred hhh---------------hhcCCccccccceeecCCCCCch----h----hhhhhcccChHHHHHHHh-hcCCEEEEEeC
Q 016165 274 KFE---------------CSQMPHSLLEHITLVDTPGVLSG----E----KQRTQRAYDFTGVTSWFA-AKCDLILLLFD 329 (394)
Q Consensus 274 ~~~---------------~~~~~~~~l~~~~l~Dt~g~lsG----e----~qrv~~~~~~~~iaral~-~~~dllLl~lD 329 (394)
... ..+....-...+.|+||||+.+. + +..+. .+...++ .++|++|+++|
T Consensus 123 ~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~------~lv~~yi~~~aDlIL~VVD 196 (772)
T 3zvr_A 123 AETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR------DMLMQFVTKENCLILAVSP 196 (772)
T ss_dssp HHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHH------HHHHHHHTSTTEEEEEEEE
T ss_pred HHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHH------HHHHHHHhcCCcEEEEEEc
Confidence 000 00000111235678999999871 1 12222 1334444 67899999999
Q ss_pred CCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 330 PHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 330 ~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
+...........+++.+...+.|+++|+||+|+.+.
T Consensus 197 As~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 197 ANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp TTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCT
T ss_pred CCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCc
Confidence 976211223347888888888999999999999754
No 242
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.00 E-value=3.8e-10 Score=106.81 Aligned_cols=144 Identities=18% Similarity=0.153 Sum_probs=78.3
Q ss_pred ccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCccccc------------CCceeee
Q 016165 190 TNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI------------PGNTVAV 255 (394)
Q Consensus 190 ~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~------------~~~~~~~ 255 (394)
..+++++.+ +++|+|+||||||||++.|+|... |..++ +.+.+.+.... .+..++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--------~~~g~--V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~ 160 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--------NEGTK--VLMAAGDTFRAAASDQLEIWAERTGCEIVV 160 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--------HTTCC--EEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--------HcCCe--EEEEeecccchhHHHHHHHHHHhcCceEEE
Confidence 345665544 999999999999999999999983 33333 33333332110 1233333
Q ss_pred ccCC-CCCcccccccccchhhhhhcCCccccccceeecCCCCCc------h--hhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 256 QADM-PFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS------G--EKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 256 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls------G--e~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
+... .+...+.+.+...... .. ....+.|++|... + -+||+. ++|+++.+|+-+++
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~--~~------~d~~lldt~gl~~~~~~~~~eLSkqr~~-------iaral~~~P~e~lL 225 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKE--EG------YDVVLCDTSGRLHTNYSLMEELIACKKA-------VGKIVSGAPNEILL 225 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHH--TT------CSEEEECCCCCSSCCHHHHHHHHHHHHH-------HHTTSTTCCSEEEE
T ss_pred ecCCccCHHHHHHHHHHHHHH--cC------CcchHHhcCCCCcchhHHHHHHHHHHHH-------HHHhhccCCCeeEE
Confidence 3221 1111112222111000 00 1235678888754 1 156666 88999999997777
Q ss_pred EeCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCc
Q 016165 327 LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQ 362 (394)
Q Consensus 327 ~lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl 362 (394)
++|+.. .......++.+.+ .+.++++++ |.|-
T Consensus 226 vLDpts---glD~~~~~~~~~~~~g~t~iiiT-hlD~ 258 (302)
T 3b9q_A 226 VLDGNT---GLNMLPQAREFNEVVGITGLILT-KLDG 258 (302)
T ss_dssp EEEGGG---GGGGHHHHHHHHHHTCCCEEEEE-CCSS
T ss_pred EEeCCC---CcCHHHHHHHHHHhcCCCEEEEe-CCCC
Confidence 788654 2222333455543 466666666 4665
No 243
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.99 E-value=2.3e-09 Score=108.99 Aligned_cols=66 Identities=27% Similarity=0.336 Sum_probs=52.8
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.+.|+||||+.+ |...+...+..+|.+|+++|+.. +...+...+++.+...+.|+++++||+|+..
T Consensus 83 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~allVvDa~~-g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 83 LINLLDTPGHAD-----------FTEDTYRTLTAVDSALMVIDAAK-GVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEEECCCCSTT-----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred EEEEEECCCchh-----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 678999999855 11134456789999999999986 5566777788888888999999999999864
No 244
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.97 E-value=1.6e-10 Score=113.67 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=67.1
Q ss_pred EEEEeecCCCchhHHHHHHHhccCC--CCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYP--GAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~--~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (394)
+++|+|+||||||||+|+|+|...| |.+....+.+++..+.+. . ...+..++ ..+.-+. .
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q--~-~~~~~ltv-------------~D~~g~~--~ 132 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK--H-PNIPNVVF-------------WDLPGIG--S 132 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE--C-SSCTTEEE-------------EECCCGG--G
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc--c-cccCCeee-------------hHhhccc--c
Confidence 7999999999999999999998854 222221111222111111 1 11111111 1111000 0
Q ss_pred hhcCCccccccceeec---CCCCCc-h--hhhhhhcccChHHHHHHHhh----------cCCEEEE-----EeCCCCCCc
Q 016165 277 CSQMPHSLLEHITLVD---TPGVLS-G--EKQRTQRAYDFTGVTSWFAA----------KCDLILL-----LFDPHKLDI 335 (394)
Q Consensus 277 ~~~~~~~~l~~~~l~D---t~g~ls-G--e~qrv~~~~~~~~iaral~~----------~~dllLl-----~lD~~~~~~ 335 (394)
....+.++++.+++.+ .+. +| | ++|++. +|++++. +||++++ .+|+..
T Consensus 133 ~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~-------la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~--- 201 (413)
T 1tq4_A 133 TNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDID-------IAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFD--- 201 (413)
T ss_dssp SSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHH-------HHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCC---
T ss_pred hHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHH-------HHHHHHhcCCCeEEEEecCcccccCcccccCCHHH---
Confidence 0122333444443322 111 55 5 999999 9999999 7777776 788876
Q ss_pred hHHHHHHHHHHh
Q 016165 336 SDEFKRVITSLR 347 (394)
Q Consensus 336 ~~~~~~~l~~l~ 347 (394)
..++.++++.+.
T Consensus 202 ~~~l~~~l~~l~ 213 (413)
T 1tq4_A 202 KEKVLQDIRLNC 213 (413)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778888888774
No 245
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.97 E-value=8.5e-10 Score=115.80 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=51.3
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
.+.++||||+.. |...+...+..+|++|+++|+.. +...+...+++.+.+.+.|+++|+||+|+...
T Consensus 76 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 76 RVNIIDTPGHVD-----------FTVEVERSLRVLDGAVTVLDAQS-GVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EEEEECCCCCSS-----------CCHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred eEEEEECcCCcc-----------hHHHHHHHHHHCCEEEEEECCCC-CCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 788999999964 11133455688999999999976 44556666777777778999999999998653
No 246
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.97 E-value=1.4e-09 Score=109.52 Aligned_cols=122 Identities=23% Similarity=0.287 Sum_probs=75.2
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeecc-CCCCCcccccccccchhhhh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~ 277 (394)
.|+++|..|+|||||+|.|++... ....+ ....+..+|.+..... .+.+.+
T Consensus 21 ~I~iiG~~d~GKSTLi~~L~~~~~--~~~~d------------~~~~e~~~GiTi~~~~~~~~~~~-------------- 72 (482)
T 1wb1_A 21 NLGIFGHIDHGKTTLSKVLTEIAS--TSAHD------------KLPESQKRGITIDIGFSAFKLEN-------------- 72 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC----------------------------------CCCEEEETT--------------
T ss_pred EEEEECCCCChHHHHHHHHHCCCc--ccccc------------cccccccCccEEecceEEEEECC--------------
Confidence 899999999999999999998661 00000 0000011122211000 000011
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~ 357 (394)
..+.++||||+.+ |.......+..+|++|+++|+.. +...+..+.+..+...+.|++++.
T Consensus 73 --------~~i~iiDtPGh~~-----------~~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~ip~Ivvi 132 (482)
T 1wb1_A 73 --------YRITLVDAPGHAD-----------LIRAVVSAADIIDLALIVVDAKE-GPKTQTGEHMLILDHFNIPIIVVI 132 (482)
T ss_dssp --------EEEEECCCSSHHH-----------HHHHHHHHTTSCCEEEEEEETTT-CSCHHHHHHHHHHHHTTCCBCEEE
T ss_pred --------EEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEecCC-CccHHHHHHHHHHHHcCCCEEEEE
Confidence 2778999999822 11244556889999999999976 445666666666666788999999
Q ss_pred ecCCccCHHHH
Q 016165 358 NKADQVDTQQL 368 (394)
Q Consensus 358 nK~Dl~~~~~~ 368 (394)
||+|+.+.+..
T Consensus 133 NK~Dl~~~~~~ 143 (482)
T 1wb1_A 133 TKSDNAGTEEI 143 (482)
T ss_dssp ECTTSSCHHHH
T ss_pred ECCCcccchhH
Confidence 99999875443
No 247
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.96 E-value=2e-09 Score=107.13 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=47.4
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCC-eEEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDD-KIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~-~viiv~nK~Dl~~ 364 (394)
.+.++||||+.. |.......+..+|++|+++|+.. +...+..+.+..+...+. ++++|.||+|+.+
T Consensus 105 ~~~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 105 KFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARY-GVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred eEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 678999999843 11133446799999999999986 344555555555554555 6999999999975
No 248
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.96 E-value=2.3e-09 Score=108.03 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=47.6
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCC------chHHHHHHHHHHhcCC-CeEEEEEec
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD------ISDEFKRVITSLRGHD-DKIRVVLNK 359 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~------~~~~~~~~l~~l~~~~-~~viiv~nK 359 (394)
.+.|+||||+.. |...+...+.++|++|+++|+.... ...+..+.+..+...+ .++++|+||
T Consensus 112 ~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK 180 (483)
T 3p26_A 112 NFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180 (483)
T ss_dssp EEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred eEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence 778999999933 2225566789999999999997621 2244555555555445 459999999
Q ss_pred CCccC
Q 016165 360 ADQVD 364 (394)
Q Consensus 360 ~Dl~~ 364 (394)
+|+.+
T Consensus 181 ~Dl~~ 185 (483)
T 3p26_A 181 MDNVD 185 (483)
T ss_dssp GGGGT
T ss_pred cCccc
Confidence 99976
No 249
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.95 E-value=8.9e-10 Score=112.52 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=70.3
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
.+|+++|.+|||||||+|.+++... .....|+.+......... .+. .+.+.+-
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~---~~~~~~t~g~~~~~~~~~-------~~~----~v~~~~~------------- 94 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETF---DPKESQTHGLNVVTKQAP-------NIK----GLENDDE------------- 94 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGG-------GSG----GGTTCST-------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceEEEEeccc-------ccc----ceeecCC-------------
Confidence 3799999999999999999998763 111122222111100000 000 0000000
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcC--CCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--DDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~--~~~vii 355 (394)
.--..+.++||||..... .+...++.++|++|+++|++. .+....++..+... +.|+++
T Consensus 95 -----~~~~~~~i~Dt~G~e~~~-----------~~~~~~l~~~d~ii~V~D~s~---~~~~~~~~~~l~~~~~~~pvil 155 (535)
T 3dpu_A 95 -----LKECLFHFWDFGGQEIMH-----------ASHQFFMTRSSVYMLLLDSRT---DSNKHYWLRHIEKYGGKSPVIV 155 (535)
T ss_dssp -----TTTCEEEEECCCSCCTTT-----------TTCHHHHHSSEEEEEEECGGG---GGGHHHHHHHHHHHSSSCCEEE
T ss_pred -----CceEEEEEEECCcHHHHH-----------HHHHHHccCCcEEEEEEeCCC---chhHHHHHHHHHHhCCCCCEEE
Confidence 000267899999963310 123456789999999999976 45556666666553 489999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
|.||+|+.+
T Consensus 156 V~NK~Dl~~ 164 (535)
T 3dpu_A 156 VMNKIDENP 164 (535)
T ss_dssp EECCTTTCT
T ss_pred EEECCCccc
Confidence 999999864
No 250
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.94 E-value=1.2e-09 Score=105.61 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=78.2
Q ss_pred cCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------------cCCceeeec
Q 016165 191 NSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------------IPGNTVAVQ 256 (394)
Q Consensus 191 ~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------------~~~~~~~~~ 256 (394)
.+++++.+ +++|+|+||||||||++.|+|... |..++ +.+.+.+... ..+..+..+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--------~~~G~--V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q 218 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--------NEGTK--VLMAAGDTFRAAASDQLEIWAERTGCEIVVA 218 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--------HTTCC--EEEECCCCSCHHHHHHHHHHHHHHTCEEECC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--------ccCCE--EEEecccccccchhHHHHHHHHhcCeEEEEe
Confidence 45665554 999999999999999999999983 33333 3333333211 012333333
Q ss_pred cCC-CCCcccccccccchhhhhhcCCccccccceeecCCCCCc------h--hhhhhhcccChHHHHHHHhhcCCEEEEE
Q 016165 257 ADM-PFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS------G--EKQRTQRAYDFTGVTSWFAAKCDLILLL 327 (394)
Q Consensus 257 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~ls------G--e~qrv~~~~~~~~iaral~~~~dllLl~ 327 (394)
... .+...+.+.+...... .. ....+.||+|... . -+||+. ++|+++.+|+-++++
T Consensus 219 ~~~~~~p~~tv~e~l~~~~~--~~------~d~~lldt~Gl~~~~~~~~~eLSkqr~~-------iaral~~~P~e~lLv 283 (359)
T 2og2_A 219 EGDKAKAATVLSKAVKRGKE--EG------YDVVLCDTSGRLHTNYSLMEELIACKKA-------VGKIVSGAPNEILLV 283 (359)
T ss_dssp SSSSCCHHHHHHHHHHHHHH--TT------CSEEEEECCCCSSCCHHHHHHHHHHHHH-------HHHHSTTCCSEEEEE
T ss_pred cccccChhhhHHHHHHHHHh--CC------CHHHHHHhcCCChhhhhHHHHHHHHHHH-------HHHHHhcCCCceEEE
Confidence 221 1111111222111100 00 1235678888754 1 146666 999999999977777
Q ss_pred eCCCCCCchHHHHHHHHHHhc-CCCeEEEEEecCCc
Q 016165 328 FDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQ 362 (394)
Q Consensus 328 lD~~~~~~~~~~~~~l~~l~~-~~~~viiv~nK~Dl 362 (394)
+|+.. .......++.+.+ .+.++++++ |.|-
T Consensus 284 LDptt---glD~~~~~~~~~~~~g~t~iiiT-hlD~ 315 (359)
T 2og2_A 284 LDGNT---GLNMLPQAREFNEVVGITGLILT-KLDG 315 (359)
T ss_dssp EEGGG---GGGGHHHHHHHHHHTCCCEEEEE-SCTT
T ss_pred EcCCC---CCCHHHHHHHHHHhcCCeEEEEe-cCcc
Confidence 88654 2222333445543 466666665 4664
No 251
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.94 E-value=2.1e-09 Score=105.94 Aligned_cols=66 Identities=27% Similarity=0.250 Sum_probs=50.8
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCe-EEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~-viiv~nK~Dl~~ 364 (394)
.+.++||||+.. |.......+..+|++|+++|+.. +...+..+++..+...+.| ++++.||+|+.+
T Consensus 76 ~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 76 HYSHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp EEEEEECCCSGG-----------GHHHHHHHHTTCSSEEEEEETTT-CCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred EEEEEECCChHH-----------HHHHHHHHHHHCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 678999999843 22244556789999999999976 4456666777777667888 899999999974
No 252
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.92 E-value=9.5e-10 Score=110.66 Aligned_cols=111 Identities=21% Similarity=0.354 Sum_probs=72.8
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
++|+++|.+|+|||||++.|.+... ..+..++.+... + ...+.+.+
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v---~~~e~~GIT~~i------------~-----~~~v~~~~-------------- 50 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKV---ASGEAGGITQHI------------G-----AYHVETEN-------------- 50 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHH---SBTTBCCCCCCS------------S-----CCCCCTTS--------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---ccccCCCeeEeE------------E-----EEEEEECC--------------
Confidence 4899999999999999999998652 222122222110 0 00011111
Q ss_pred hcCCccccccceeecCCCCCc--hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~vii 355 (394)
..+.++||||+.. .+. ...+..+|++|+++|+.. +...+..+.+..+...+.|+++
T Consensus 51 --------~~i~~iDTPGhe~f~~~~-------------~~~~~~aD~aILVVda~~-g~~~qT~e~l~~~~~~~vPiIV 108 (501)
T 1zo1_I 51 --------GMITFLDTPGHAAFTSMR-------------ARGAQATDIVVLVVAADD-GVMPQTIEAIQHAKAAQVPVVV 108 (501)
T ss_dssp --------SCCCEECCCTTTCCTTSB-------------CSSSBSCSSEEEEEETTT-BSCTTTHHHHHHHHHTTCCEEE
T ss_pred --------EEEEEEECCCcHHHHHHH-------------HHHHhhCCEEEEEeeccc-CccHHHHHHHHHHHhcCceEEE
Confidence 2678999999855 221 123688999999999875 3344455666666667889999
Q ss_pred EEecCCccC
Q 016165 356 VLNKADQVD 364 (394)
Q Consensus 356 v~nK~Dl~~ 364 (394)
+.||+|+.+
T Consensus 109 viNKiDl~~ 117 (501)
T 1zo1_I 109 AVNKIDKPE 117 (501)
T ss_dssp EEECSSSST
T ss_pred EEEeccccc
Confidence 999999864
No 253
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.92 E-value=2.5e-12 Score=121.51 Aligned_cols=42 Identities=14% Similarity=0.058 Sum_probs=35.8
Q ss_pred eeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhcc
Q 016165 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+++.|+ ..+++++++++++ +++|+||||||||||+++|+|..
T Consensus 107 vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 107 IELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344554 3589999998887 99999999999999999999986
No 254
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.91 E-value=1.6e-09 Score=113.31 Aligned_cols=65 Identities=22% Similarity=0.199 Sum_probs=51.1
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCcc
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~ 363 (394)
.+.++||||+.. |.......+..+|..++++|+.. +...+...+++.+...+.|+++++||+|+.
T Consensus 75 ~~nliDTpG~~~-----------f~~~~~~~l~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 75 RVFLLDAPGYGD-----------FVGEIRGALEAADAALVAVSAEA-GVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEEECCCSGG-----------GHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred EEEEEeCCCccc-----------hHHHHHHHHhhcCcEEEEEcCCc-ccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 678999999843 11244566789999999999876 556666778887777789999999999985
No 255
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.90 E-value=1.8e-09 Score=107.78 Aligned_cols=152 Identities=17% Similarity=0.152 Sum_probs=77.8
Q ss_pred cccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------------cCCceee
Q 016165 189 LTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------------IPGNTVA 254 (394)
Q Consensus 189 l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------------~~~~~~~ 254 (394)
.++++|++.. +++|+|+||||||||+++|+|... +..++ +.+.+.+... ..+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--------~~~G~--V~l~g~D~~r~aa~eQL~~~~~r~~I~vV 352 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--------QQGKS--VMLAAGDTFRAAAVEQLQVWGQRNNIPVI 352 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--------HTTCC--EEEECCCTTCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--------hcCCe--EEEecCcccchhhHHHHHHHHHhcCceEE
Confidence 3567777665 999999999999999999999883 33333 2222222110 0122222
Q ss_pred eccCCCCCcccccccccchhhhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHH-hhcCCEEEEEeCCCCC
Q 016165 255 VQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWF-AAKCDLILLLFDPHKL 333 (394)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral-~~~~dllLl~lD~~~~ 333 (394)
.+....+...+.+.+..+.. . --..+.|+||+|.+...............+++++ ...|+-+||++|+..
T Consensus 353 ~Q~~~~~p~~tV~e~l~~a~---~-----~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt- 423 (503)
T 2yhs_A 353 AQHTGADSASVIFDAIQAAK---A-----RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST- 423 (503)
T ss_dssp CCSTTCCHHHHHHHHHHHHH---H-----TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG-
T ss_pred ecccCcCHHHHHHHHHHHHH---h-----cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc-
Confidence 22211111111111110000 0 0123568999998751111111000011133333 235888899999876
Q ss_pred CchHHHHHHHHHHhcC-CCeEEEEEecCCc
Q 016165 334 DISDEFKRVITSLRGH-DDKIRVVLNKADQ 362 (394)
Q Consensus 334 ~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl 362 (394)
.......++.+.+. +.+ .+|+||+|-
T Consensus 424 --Gq~al~~ak~f~~~~~it-gvIlTKLD~ 450 (503)
T 2yhs_A 424 --GQNAVSQAKLFHEAVGLT-GITLTKLDG 450 (503)
T ss_dssp --THHHHHHHHHHHHHTCCS-EEEEECGGG
T ss_pred --cHHHHHHHHHHHhhcCCC-EEEEEcCCC
Confidence 45555666666543 444 456678885
No 256
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.90 E-value=2.8e-09 Score=110.20 Aligned_cols=67 Identities=24% Similarity=0.320 Sum_probs=46.2
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCC------CchHHHHHHHHHHhcCCC-eEEEEEec
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL------DISDEFKRVITSLRGHDD-KIRVVLNK 359 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~------~~~~~~~~~l~~l~~~~~-~viiv~nK 359 (394)
.+.|+||||+.. |...+...+..+|++|+++|+... ....+..+.+..+...+. ++++|+||
T Consensus 246 ~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNK 314 (611)
T 3izq_1 246 NFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 314 (611)
T ss_dssp EEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred eEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEec
Confidence 678999999954 111333457899999999999741 012344555555555564 59999999
Q ss_pred CCccC
Q 016165 360 ADQVD 364 (394)
Q Consensus 360 ~Dl~~ 364 (394)
+|+.+
T Consensus 315 iDl~~ 319 (611)
T 3izq_1 315 MDNVD 319 (611)
T ss_dssp TTTTT
T ss_pred ccccc
Confidence 99976
No 257
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.89 E-value=7.9e-11 Score=117.03 Aligned_cols=178 Identities=10% Similarity=0.042 Sum_probs=100.7
Q ss_pred ceeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCc---ccc--
Q 016165 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVD---DRS-- 247 (394)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~---~~~-- 247 (394)
.++++.|+.. ..+++++ |.++. +++|+|+||||||||+++|+|... |..+ .+.+.++. ...
T Consensus 135 ~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--------~~~G--~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 135 TPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--------ADVI--VVGLIGERGREVKDFI 202 (438)
T ss_dssp CCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--------CSEE--EEEEESCCHHHHHHHH
T ss_pred eccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--------CCeE--EEEEeceecHHHHHHH
Confidence 3445566521 4589999 88887 999999999999999999999983 3333 24445552 111
Q ss_pred --------c-CCceeeeccCCC-CCcccccccc-cchhhhhhcCCccccccceeecCCCCCc-hhhhhhhcccChHHHHH
Q 016165 248 --------I-PGNTVAVQADMP-FSGLTTFGTA-FLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTS 315 (394)
Q Consensus 248 --------~-~~~~~~~~~~~~-~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iar 315 (394)
. ....++.+.... +..++...+. +..... ...-. .-..+.|....+| |+ ||+. +|
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~-~~~~~---~v~~~ld~l~~lS~g~-qrvs-------lA- 269 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDF-RDRGQ---HVLLIMDSLTRYAMAQ-REIA-------LA- 269 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHH-HTTTC---EEEEEEECHHHHHHHH-HHHH-------HH-
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHH-HhCCC---CHHHHHHhHHHHHHHH-HHHH-------HH-
Confidence 0 011223332111 1111111111 011100 00011 1123445555566 56 8888 65
Q ss_pred HHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc---C-CC-----eEEEEEecCCccCHHHHHHHHhHhhhccceeeecC
Q 016165 316 WFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---H-DD-----KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTP 386 (394)
Q Consensus 316 al~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~---~-~~-----~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~ 386 (394)
+.+|++ .-++|+.. ...+.++++++.+ . |. ++++++ |+.+ ..-.++++.+.+|+++..+
T Consensus 270 --l~~p~~-t~glD~~~---~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~t-----Hdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 270 --IGEPPA-TKGYPPSV---FAKLPALVERAGNGIHGGGSITAFYTVLTEG-----DDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp --TTCCCC-SSSCCTTH---HHHHHHHHTTCSCCSTTSCEEEEEEEEECSS-----SCSC-CHHHHHHHHHSSEEEEECH
T ss_pred --hCCCcc-cccCCHHH---HHHHHHHHHHHHhccCCCCcccceeEEEEeC-----CCcc-chhhceEEEEeCcEEEEeC
Confidence 889988 33777765 7777888887765 2 43 444444 3333 2223889999999998765
Q ss_pred ccc
Q 016165 387 EVV 389 (394)
Q Consensus 387 ~~~ 389 (394)
...
T Consensus 338 ~~~ 340 (438)
T 2dpy_A 338 RLA 340 (438)
T ss_dssp HHH
T ss_pred CHH
Confidence 543
No 258
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.88 E-value=4e-09 Score=110.68 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=51.4
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
.+.++||||+.. |...+...+..+|.+|+++|+.. +...+....+..+.+.+.|+++++||+|+...
T Consensus 78 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 78 RINIIDTPGHVD-----------FTIEVERSMRVLDGAIVVFDSSQ-GVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp EEEEECCCSSTT-----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred EEEEEECcCccc-----------hHHHHHHHHHHCCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 788999999954 22244556788999999999986 44555566667777778999999999998643
No 259
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.88 E-value=1.1e-09 Score=117.69 Aligned_cols=146 Identities=14% Similarity=0.037 Sum_probs=82.7
Q ss_pred ccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcC-CCcccceeEEEEecCcccccCCceeeeccCCCCCcc
Q 016165 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIG-PEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGL 264 (394)
Q Consensus 188 ~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs-~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 264 (394)
+++|+++..+. +++|+|||||||||||++++..... +..+ ..|.... .+
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G~~vpa~~~-~~-------------------------- 702 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIGCFVPCESA-EV-------------------------- 702 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHTCCBSEEEE-EE--------------------------
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcCCccccccc-cc--------------------------
Confidence 55577777764 9999999999999999999433210 0000 0111110 00
Q ss_pred cccccccchhhhhhcCCccccccceeec-CCCCCc-hhhhhhhcccChHHHHHHH--hhcCCEEEE-----EeCCCCCCc
Q 016165 265 TTFGTAFLSKFECSQMPHSLLEHITLVD-TPGVLS-GEKQRTQRAYDFTGVTSWF--AAKCDLILL-----LFDPHKLDI 335 (394)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~l~D-t~g~ls-Ge~qrv~~~~~~~~iaral--~~~~dllLl-----~lD~~~~~~ 335 (394)
..+..++..+++.| ....+| ++.++.+ +++.+ +.+|+++|+ ++|+..
T Consensus 703 --------------~~~d~i~~~ig~~d~l~~~lStf~~e~~~-------~a~il~~a~~~sLlLLDEp~~GlD~~~--- 758 (934)
T 3thx_A 703 --------------SIVDCILARVGAGDSQLKGVSTFMAEMLE-------TASILRSATKDSLIIIDELGRGTSTYD--- 758 (934)
T ss_dssp --------------ECCSEEEEECC---------CHHHHHHHH-------HHHHHHHCCTTCEEEEESCSCSSCHHH---
T ss_pred --------------hHHHHHHHhcCchhhHHHhHhhhHHHHHH-------HHHHHHhccCCcEEEEeCCCCCCCHHH---
Confidence 00112233455544 334455 5555555 44555 889999998 666643
Q ss_pred hHHH-HHHHHHHhc-CCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeecCccce
Q 016165 336 SDEF-KRVITSLRG-HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVR 390 (394)
Q Consensus 336 ~~~~-~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~~~~~~ 390 (394)
...+ ..+++.+.+ .+.++++++ |+.+.....+++..+++|++...++..+
T Consensus 759 ~~~i~~~il~~l~~~~g~~vl~aT-----H~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 759 GFGLAWAISEYIATKIGAFCMFAT-----HFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEE-----SCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEc-----CcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 4444 567777765 478888888 4433322237888899999876544433
No 260
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.86 E-value=3.1e-09 Score=101.03 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=70.2
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhhh
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (394)
..|+++|.+|+|||||+|.+++... . ...+.++....... +.+.+. .
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~---~-~~~~~t~~~~~~~~-----------------~~~~~~----~-------- 202 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAF---P-GEYIPTVFDNYSAN-----------------VMVDGK----P-------- 202 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC---C-CSCCCCSEEEEEEE-----------------EEETTE----E--------
T ss_pred eEEEEECCCCCChHHHHHHHHhCCC---C-cccCCcccceeEEE-----------------EEECCE----E--------
Confidence 4799999999999999999998662 1 11222322221100 000110 0
Q ss_pred hcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHH-HHHHHHhc--CCCeEE
Q 016165 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIR 354 (394)
Q Consensus 278 ~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~-~~l~~l~~--~~~~vi 354 (394)
..+.++||||.... + . +...++.++|++++++|+.......... .++..+.. .+.|++
T Consensus 203 --------~~~~l~Dt~G~~~~---~-~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i 263 (332)
T 2wkq_A 203 --------VNLGLWDTAGLEDY---D-R-------LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII 263 (332)
T ss_dssp --------EEEEEEEECCCGGG---T-T-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEE
T ss_pred --------EEEEEEeCCCchhh---h-H-------HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 15669999997431 1 1 2334578999999999998721112222 23344433 278999
Q ss_pred EEEecCCccCH
Q 016165 355 VVLNKADQVDT 365 (394)
Q Consensus 355 iv~nK~Dl~~~ 365 (394)
+|.||+|+.+.
T Consensus 264 lv~nK~Dl~~~ 274 (332)
T 2wkq_A 264 LVGTKLDLRDD 274 (332)
T ss_dssp EEEECHHHHTC
T ss_pred EEEEchhcccc
Confidence 99999998543
No 261
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.85 E-value=1.4e-08 Score=96.42 Aligned_cols=71 Identities=13% Similarity=0.266 Sum_probs=47.2
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHH---HHHHHHHHh--cCCCeEEEEEecCC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDE---FKRVITSLR--GHDDKIRVVLNKAD 361 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~---~~~~l~~l~--~~~~~viiv~nK~D 361 (394)
.+.+|||+|+- +-+-. . + +...+.++++.+|+++|.+.. .... +.+++..+. ..+.|++++.||+|
T Consensus 47 ~LqIWDTAGQE---rf~~~-~--l--~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~D 117 (331)
T 3r7w_B 47 DLAVMELPGQL---NYFEP-S--Y--DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117 (331)
T ss_dssp CEEEEECCSCS---SSCCC-S--H--HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCC
T ss_pred EEEEEECCCch---hccch-h--h--hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcc
Confidence 78999999983 21100 0 0 246778999999999999873 2222 223344433 24689999999999
Q ss_pred ccCHH
Q 016165 362 QVDTQ 366 (394)
Q Consensus 362 l~~~~ 366 (394)
+.+.+
T Consensus 118 L~~~~ 122 (331)
T 3r7w_B 118 GLSED 122 (331)
T ss_dssp SSCSH
T ss_pred cCchh
Confidence 97643
No 262
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.85 E-value=1.1e-08 Score=99.42 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=49.5
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeE-EEEEe-cCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKI-RVVLN-KADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~v-iiv~n-K~Dl~~ 364 (394)
.+.++||||+.. |.......+..+|++|+++| .. +...+..+.+..+...+.+. ++++| |+|+ +
T Consensus 61 ~i~iiDtPGh~~-----------f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~ 126 (370)
T 2elf_A 61 NMVFVDAHSYPK-----------TLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLLGFKHGIIALTRSDST-H 126 (370)
T ss_dssp EEEEEECTTTTT-----------CHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C
T ss_pred EEEEEECCChHH-----------HHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C
Confidence 678999999954 11133345689999999999 54 55666667776666667777 88899 9999 6
Q ss_pred HHHH
Q 016165 365 TQQL 368 (394)
Q Consensus 365 ~~~~ 368 (394)
.+.+
T Consensus 127 ~~~~ 130 (370)
T 2elf_A 127 MHAI 130 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 263
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.85 E-value=7.1e-11 Score=105.52 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=24.5
Q ss_pred CcccccCCCCcccEEEEeecCCCchhHHHHHHHhcc
Q 016165 186 SPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 186 ~~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
..++++.++..+.+++|+||||||||||+|+|+|..
T Consensus 9 ~~~~~~~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 9 KPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346677556666699999999999999999999987
No 264
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.84 E-value=2.4e-09 Score=103.45 Aligned_cols=61 Identities=26% Similarity=0.300 Sum_probs=35.7
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~ 366 (394)
.+.++||+|+...+ ..+...+|++++++|+.. ......+...+. ..+.++|+||+|+.+..
T Consensus 168 ~~iliDT~Gi~~~~--------------~~l~~~~d~vl~V~d~~~---~~~~~~i~~~il--~~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 168 DIILIETVGVGQSE--------------FAVADMVDMFVLLLPPAG---GDELQGIKRGII--EMADLVAVTKSDGDLIV 228 (349)
T ss_dssp SEEEEECCCC--CH--------------HHHHTTCSEEEEEECCC---------------C--CSCSEEEECCCSGGGHH
T ss_pred CEEEEECCCcchhh--------------hhHHhhCCEEEEEEcCCc---chhHHHhHHHHH--hcCCEEEEeeecCCCch
Confidence 56789999985321 124679999999999875 111111111121 34779999999987543
No 265
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=98.84 E-value=6.1e-09 Score=81.89 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=65.4
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
...+|+++...+++.|..+|.|++|+|+.++.+.+|..-| ++.+.+.+++..+|.|++|.++.+||+..|
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m 98 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLL 98 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHh
Confidence 3579999999999999999999999999999999999877 788999999999999999999999998655
No 266
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=9e-09 Score=99.80 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=33.1
Q ss_pred CEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHH
Q 016165 322 DLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMR 370 (394)
Q Consensus 322 dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~ 370 (394)
+++++.+|............+++.+. .+.|+|+|.||+|+....++..
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHH
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHH
Confidence 46888887633244555556777764 5789999999999987766544
No 267
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=98.83 E-value=5.7e-09 Score=80.30 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
-.+|+++...+..+|..+|.|++|+|+.++.+.++...|++...+..+|..+|.+++|.++.+||+.+|+
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~ 88 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFL 88 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEECHHHHTHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 3478899999999999999999999999999999999999999999999999999999999999988765
No 268
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.83 E-value=3.8e-09 Score=113.16 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=49.8
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCcc
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~ 363 (394)
.+.|+||||+.. |.......++.+|.+|+++|+.. +...+...++..+...+.|+++++||+|+.
T Consensus 99 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDTIE-GVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCS-----------SCHHHHHHHHTCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred eEEEEECcCchh-----------hHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 678999999965 22234556789999999999986 444555566666666789999999999985
No 269
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.83 E-value=2.5e-09 Score=105.39 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=31.7
Q ss_pred ccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccc
Q 016165 190 TNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD 234 (394)
Q Consensus 190 ~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~ 234 (394)
++++++++. .|+|+|+||||||||+|+|++.. ..+...|.++
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~---~~i~~~~ftT 191 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH---PKIAPYPFTT 191 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC---CEECCCTTCS
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC---ccccCcccce
Confidence 345555554 89999999999999999999986 4445555444
No 270
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.82 E-value=1.3e-08 Score=106.92 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=50.7
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
.+.|+||||+.. |.......+..+|.+|+++|+.. +...+...+++.+...+.|+++++||+|+...
T Consensus 83 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 83 RINIIDTPGHVD-----------FTIEVERSMRVLDGAVMVYCAVG-GVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eEEEEeCCCccc-----------hHHHHHHHHHHCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 678999999954 12234456788999999999986 44555566667666678999999999998643
No 271
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.82 E-value=8e-09 Score=106.30 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=49.7
Q ss_pred cceeecCCCCCc--hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCcc
Q 016165 287 HITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (394)
Q Consensus 287 ~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~ 363 (394)
.+.++||||+.+ .+.. ..+..+|++|+++|+.. +...+..+.++.+...+.|++++.||+|+.
T Consensus 71 ~i~liDTPGhe~F~~~~~-------------r~~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRK-------------RGGALADLAILIVDINE-GFKPQTQEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCTTSBC-------------SSSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHHHHHH-------------HHHhhCCEEEEEEECCC-CccHhHHHHHHHHHHcCCeEEEEecccccc
Confidence 478999999965 2221 12578999999999986 556677777777777889999999999985
No 272
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.81 E-value=4.2e-09 Score=103.47 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=48.9
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCe-EEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~-viiv~nK~Dl~~ 364 (394)
.+.++||||+.. |.......+..+|++|+++|+.. +...+..+.+..+...+.| ++++.||+|+.+
T Consensus 67 ~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 67 HYAHTDCPGHAD-----------YVKNMITGTAPLDGCILVVAAND-GPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp EEEEEECSSHHH-----------HHHHHHHTSSCCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred EEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 678999999832 11133455789999999999986 4455656666666666788 789999999974
No 273
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.81 E-value=2.8e-09 Score=102.63 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=28.6
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhcc
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
.+++++++..+. +++++|+||||||||+|.|++..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 466666665544 89999999999999999999865
No 274
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.80 E-value=1.9e-10 Score=110.85 Aligned_cols=175 Identities=9% Similarity=0.061 Sum_probs=94.4
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccC---C
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIP---G 250 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~---~ 250 (394)
++++.|+.. ..+++++ |.++. +++|+|+||||||||+++|+|... |..+ .+.+.++...... +
T Consensus 50 ~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--------~~~g--~i~~~G~~~~ev~~~i~ 117 (347)
T 2obl_A 50 VIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--------ADII--VLALIGERGREVNEFLA 117 (347)
T ss_dssp CCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--------CSEE--EEEEESCCHHHHHHHHT
T ss_pred ccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--------CCEE--EEEEecccHHHHHHHHH
Confidence 334466521 4689998 88877 999999999999999999999984 2222 2334443311100 0
Q ss_pred c--------ee--eeccCCCCCcccccccc--cchhhhhhcCCcc-ccccceeecCCCCCc-hhhhhhhcccChHHHHHH
Q 016165 251 N--------TV--AVQADMPFSGLTTFGTA--FLSKFECSQMPHS-LLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSW 316 (394)
Q Consensus 251 ~--------~~--~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~-~l~~~~l~Dt~g~ls-Ge~qrv~~~~~~~~iara 316 (394)
. ++ ..+.. ....... ........+...+ -.+-+.+.|.+..+| |+ +++. +|
T Consensus 118 ~~~~~~~~~~v~~~~~~~-----~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~-------la-- 182 (347)
T 2obl_A 118 LLPQSTLSKCVLVVTTSD-----RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVG-------LA-- 182 (347)
T ss_dssp TSCHHHHTTEEEEEECTT-----SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHH-------HH--
T ss_pred hhhhhhhhceEEEEECCC-----CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHH-------HH--
Confidence 0 00 00000 0000000 0000000000000 011123446666677 66 7777 55
Q ss_pred HhhcCCEEEEEeCCCCCCchHHHHHHHHHHhc--CCC-----eEEEEEecCCccCHHHHHH-HHhHhhhccceeeecCcc
Q 016165 317 FAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDD-----KIRVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEV 388 (394)
Q Consensus 317 l~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~--~~~-----~viiv~nK~Dl~~~~~~~~-~~~~~~~~~G~i~~~~~~ 388 (394)
+.+|++ --++|+.. ...+.++++++.+ .|. ++++++ |+.+ .. .+++..+.+|+++..+..
T Consensus 183 -l~~p~~-t~Gldp~~---~~~l~~ller~~~~~~GsiT~~~tVl~~t-----hdl~--~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 183 -SGEPDV-RGGFPPSV---FSSLPKLLERAGPAPKGSITAIYTVLLES-----DNVN--DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp -TTCCCC-BTTBCHHH---HHHHHHHHTTCEECSSSEEEEEEEEECCS-----SCCC--CHHHHHHHHHCSEEEEBCHHH
T ss_pred -cCCCCc-ccCCCHHH---HHHHHHHHHHHhCCCCCCeeeEEEEEEeC-----CCCC--ChhhhheEEeeCcEEEEeCCH
Confidence 678887 23666654 6677778877764 344 334444 3332 23 388999999999876544
Q ss_pred c
Q 016165 389 V 389 (394)
Q Consensus 389 ~ 389 (394)
.
T Consensus 251 ~ 251 (347)
T 2obl_A 251 A 251 (347)
T ss_dssp H
T ss_pred H
Confidence 3
No 275
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=98.80 E-value=1.5e-08 Score=76.63 Aligned_cols=69 Identities=16% Similarity=0.334 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN-LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~-L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
.+|+++...+..+|..+|.|++|+|+.++.+.++...| ++...+..+|..+|.+++|.++.+||+..+.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 73 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFAR 73 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 58999999999999999999999999999999999887 8899999999999999999999999987764
No 276
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.80 E-value=3.4e-10 Score=102.01 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=23.1
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhcc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
...+++++|++.+ +++|+||||||||||+++|+|..
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999877 99999999999999999999987
No 277
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.79 E-value=1.3e-08 Score=104.60 Aligned_cols=66 Identities=30% Similarity=0.348 Sum_probs=48.5
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.+.++||||+.. |.......+..+|.+|+++|+.. +...+....+......+.|+++++||+|+.+
T Consensus 74 ~inliDTPGh~d-----------F~~ev~r~l~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 74 KLHLIDTPGHVD-----------FSYEVSRALAACEGALLLIDASQ-GIEAQTVANFWKAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEECCCCSGG-----------GHHHHHHHHHTCSEEEEEEETTT-BCCHHHHHHHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEECCCcHh-----------HHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHCCCCEEEEEeccCccc
Confidence 678999999954 11123344689999999999986 4444555555555567899999999999864
No 278
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.78 E-value=1.3e-09 Score=112.39 Aligned_cols=67 Identities=21% Similarity=0.162 Sum_probs=36.9
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCC----Cc--hHHHHHHHHHHhcCCCe-EEEEEec
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL----DI--SDEFKRVITSLRGHDDK-IRVVLNK 359 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~----~~--~~~~~~~l~~l~~~~~~-viiv~nK 359 (394)
.+.|+||||+..-.+. ....+..+|++|+++|+... +. ..+..+.+..+...+.+ +|+|+||
T Consensus 256 ~i~iiDTPGh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNK 324 (592)
T 3mca_A 256 IYEIGDAPGHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNK 324 (592)
T ss_dssp ---CCEEESSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEEC
T ss_pred EEEEEECCChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEec
Confidence 6789999999641111 11236789999999998641 11 23344555555556775 8999999
Q ss_pred CCccC
Q 016165 360 ADQVD 364 (394)
Q Consensus 360 ~Dl~~ 364 (394)
+|+.+
T Consensus 325 iDl~~ 329 (592)
T 3mca_A 325 LDLMS 329 (592)
T ss_dssp GGGGT
T ss_pred ccccc
Confidence 99965
No 279
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=98.78 E-value=2.4e-08 Score=75.23 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
.-.+|+++...+.++|..+|.|++|+|+.++.+.++...| ++...+..++..+|.+++|.++.+||+.+|.-
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 78 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLE 78 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSSSCSEEEHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3468999999999999999999999999999999999887 78899999999999999999999999877653
No 280
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.78 E-value=1.1e-08 Score=105.34 Aligned_cols=66 Identities=26% Similarity=0.322 Sum_probs=47.6
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.+.++||||+.. |.......+..+|.+|+++|+.. +...+....+......+.|+++++||+|+.+
T Consensus 72 ~l~liDTPGh~d-----------F~~ev~~~l~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 72 QLNFIDTPGHVD-----------FSYEVSRSLAACEGALLVVDAGQ-GVEAQTLANCYTAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEECCCCGG-----------GHHHHHHHHHHCSEEEEEEETTT-CCCTHHHHHHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEECCCchH-----------HHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEeeeccCccc
Confidence 678999999954 11233445788999999999976 3333444444445556889999999999965
No 281
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.76 E-value=3.8e-08 Score=98.42 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=45.0
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchH-------HHHHHHHHHhcCCCe-EEEEEe
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISD-------EFKRVITSLRGHDDK-IRVVLN 358 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~-------~~~~~l~~l~~~~~~-viiv~n 358 (394)
.+.++||||+.. |.......+..+|++|+++|+.. +... +..+.+..+...+.+ +++++|
T Consensus 86 ~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 86 QVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGV-GEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSH-HHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred eEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCc-CccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence 678999999843 22234455789999999999975 1111 344444444455665 899999
Q ss_pred cCCcc
Q 016165 359 KADQV 363 (394)
Q Consensus 359 K~Dl~ 363 (394)
|+|+.
T Consensus 154 K~Dl~ 158 (458)
T 1f60_A 154 KMDSV 158 (458)
T ss_dssp CGGGG
T ss_pred ccccc
Confidence 99997
No 282
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=98.75 E-value=1.6e-08 Score=74.66 Aligned_cols=68 Identities=18% Similarity=0.370 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
||+++...+..+|..+|++++|+|+.++.+.++...| ++...+..++..+|.+++|.++.+||+.+|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 70 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMT 70 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 6899999999999999999999999999999999887 5788999999999999999999999988775
No 283
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.75 E-value=1.1e-08 Score=104.31 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=77.8
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCc--CC-CcccceeEEEEecCcccccCCceee-eccCCCCCcccccccccchh
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHI--GP-EPTTDRFVVVMSGVDDRSIPGNTVA-VQADMPFSGLTTFGTAFLSK 274 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~v--s~-~p~t~r~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 274 (394)
-|||+|..++|||||.-.|+-..- .+- +. ..++......++..+.+.-.|.++. ....+.+.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG--~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~----------- 99 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGG--AIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD----------- 99 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CHHHHHHHHHC--------------------CTTTEEEEEETT-----------
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcC--cccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC-----------
Confidence 699999999999999999974431 100 00 0000000011122222222333331 111111222
Q ss_pred hhhhcCCccccccceeecCCCCCc--hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCe
Q 016165 275 FECSQMPHSLLEHITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK 352 (394)
Q Consensus 275 ~~~~~~~~~~l~~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~ 352 (394)
..++|+||||+.+ +|-.| .++-+|..|+++|+.. +...+...+++.+.+.+.|
T Consensus 100 -----------~~iNlIDTPGHvDF~~Ev~r-------------aL~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~lp 154 (548)
T 3vqt_A 100 -----------RVVNLLDTPGHQDFSEDTYR-------------VLTAVDSALVVIDAAK-GVEAQTRKLMDVCRMRATP 154 (548)
T ss_dssp -----------EEEEEECCCCGGGCSHHHHH-------------HHHSCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCC
T ss_pred -----------EEEEEEeCCCcHHHHHHHHH-------------HHHhcCceEEEeecCC-CcccccHHHHHHHHHhCCc
Confidence 2789999999987 55433 3477999999999987 7888888899999899999
Q ss_pred EEEEEecCCccC
Q 016165 353 IRVVLNKADQVD 364 (394)
Q Consensus 353 viiv~nK~Dl~~ 364 (394)
+++++||+|...
T Consensus 155 ~i~fINK~Dr~~ 166 (548)
T 3vqt_A 155 VMTFVNKMDREA 166 (548)
T ss_dssp EEEEEECTTSCC
T ss_pred eEEEEecccchh
Confidence 999999999754
No 284
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.74 E-value=2.2e-09 Score=101.01 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=31.2
Q ss_pred cccccCCCCccc--EEEEeecCCCchhHHHHHHHhcc
Q 016165 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 187 ~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
.+|+++++.+.+ +++|+|+||+|||||++.|++..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468888877766 99999999999999999999987
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.74 E-value=4.6e-08 Score=90.48 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=30.4
Q ss_pred cccccCCCCcccEEEEeecCCCchhHHHHHHHhcc
Q 016165 187 PLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 187 ~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
.+++++++.-+..++|+||||||||||+++|+|..
T Consensus 15 ~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 15 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 47888885444599999999999999999999988
No 286
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=98.74 E-value=3.5e-08 Score=75.33 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
.+|+++...+..+|..+|++++|+|+.++...++...| ++...+..++..+|.+++|.++.+||+.+|.-
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~~~~~ 84 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVR 84 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 48999999999999999999999999999999999987 66899999999999999999999999887753
No 287
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.73 E-value=4.9e-08 Score=101.00 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=44.2
Q ss_pred cceeecCCCCCc----h-----hhhhhhcccChHHHHHHHhhcCCE-EEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEE
Q 016165 287 HITLVDTPGVLS----G-----EKQRTQRAYDFTGVTSWFAAKCDL-ILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (394)
Q Consensus 287 ~~~l~Dt~g~ls----G-----e~qrv~~~~~~~~iaral~~~~dl-lLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv 356 (394)
.+.+.|.||+.. | .++... +.+.++.++.. ++++++....-.......+++.+...+.++|+|
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~-------li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKT-------LIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHH-------HHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHH-------HHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 467889887653 1 222223 67777777644 444433221111345678888888888899999
Q ss_pred EecCCccCH
Q 016165 357 LNKADQVDT 365 (394)
Q Consensus 357 ~nK~Dl~~~ 365 (394)
+||.|+.+.
T Consensus 221 lTK~Dlv~~ 229 (608)
T 3szr_A 221 LTKPDLVDK 229 (608)
T ss_dssp EECGGGSSS
T ss_pred ecchhhcCc
Confidence 999998754
No 288
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.73 E-value=1.7e-09 Score=110.14 Aligned_cols=150 Identities=9% Similarity=0.096 Sum_probs=90.6
Q ss_pred CCcccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeec-cCCCCCcccccccccc
Q 016165 194 FDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFL 272 (394)
Q Consensus 194 ~~~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~ 272 (394)
+..+.+++|+|+||+|||||++.++|... +. +...+.+.+++... .+... ..+ +..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--------~~-G~~vi~~~~ee~~~----~l~~~~~~~---g~~------- 334 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENAC--------AN-KERAILFAYEESRA----QLLRNAYSW---GMD------- 334 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHH--------TT-TCCEEEEESSSCHH----HHHHHHHTT---SCC-------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH--------hC-CCCEEEEEEeCCHH----HHHHHHHHc---CCC-------
Confidence 33444999999999999999999999873 11 22223333332110 00000 000 000
Q ss_pred hhhhhhcCCcccc--ccceeec-CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE----EeCCCCCC--chHHHHHH
Q 016165 273 SKFECSQMPHSLL--EHITLVD-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL----LFDPHKLD--ISDEFKRV 342 (394)
Q Consensus 273 ~~~~~~~~~~~~l--~~~~l~D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl----~lD~~~~~--~~~~~~~~ 342 (394)
..++. ..+.+.+ .|..+| |++|++. +++++..+|+++|+ .+|....+ ....+.++
T Consensus 335 --------~~~~~~~g~~~~~~~~p~~LS~g~~q~~~-------~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~l 399 (525)
T 1tf7_A 335 --------FEEMERQNLLKIVCAYPESAGLEDHLQII-------KSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGV 399 (525)
T ss_dssp --------HHHHHHTTSEEECCCCGGGSCHHHHHHHH-------HHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHH
T ss_pred --------HHHHHhCCCEEEEEeccccCCHHHHHHHH-------HHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHH
Confidence 00000 1233333 567788 8999999 99999999999998 66665111 25667788
Q ss_pred HHHHhcCCCeEEEEEecCCccC----H-HHHHHH-HhHhhhccce
Q 016165 343 ITSLRGHDDKIRVVLNKADQVD----T-QQLMRV-YGALMWSLGK 381 (394)
Q Consensus 343 l~~l~~~~~~viiv~nK~Dl~~----~-~~~~~~-~~~~~~~~G~ 381 (394)
++.+++.+.+++++.|...... + ..+..+ |++++++.|+
T Consensus 400 l~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 400 TGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888888999999986541110 0 333444 7888887776
No 289
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.73 E-value=1.2e-08 Score=97.39 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=72.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccc------------cCCceeeeccCCCCCcccc
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------------IPGNTVAVQADMPFSGLTT 266 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~ 266 (394)
+++|+|+||||||||++.|+|.. .|..++ +.+.+.+... ..+..+..+.....+..+.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l--------~~~~g~--V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v 200 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL--------KNHGFS--VVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVA 200 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH--------HHTTCC--EEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--------HhcCCE--EEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHH
Confidence 99999999999999999999988 333333 2223322111 0122122221111111111
Q ss_pred cccccchhhhhhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHH
Q 016165 267 FGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL 346 (394)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l 346 (394)
+.+..... ..-..+.+.||+|...-...... . ...+++++ .||-.++++|+.. ..+..+.++.+
T Consensus 201 ~e~l~~~~--------~~~~d~vliDtaG~~~~~~~l~~-e--L~~i~ral--~~de~llvLDa~t---~~~~~~~~~~~ 264 (328)
T 3e70_C 201 YDAIQHAK--------ARGIDVVLIDTAGRSETNRNLMD-E--MKKIARVT--KPNLVIFVGDALA---GNAIVEQARQF 264 (328)
T ss_dssp HHHHHHHH--------HHTCSEEEEEECCSCCTTTCHHH-H--HHHHHHHH--CCSEEEEEEEGGG---TTHHHHHHHHH
T ss_pred HHHHHHHH--------hccchhhHHhhccchhHHHHHHH-H--HHHHHHHh--cCCCCEEEEecHH---HHHHHHHHHHH
Confidence 11111100 00123457899998651111111 0 11244544 4888889999876 55667777777
Q ss_pred hcCCCeEEEEEecCCcc
Q 016165 347 RGHDDKIRVVLNKADQV 363 (394)
Q Consensus 347 ~~~~~~viiv~nK~Dl~ 363 (394)
.+.-....+++||.|-.
T Consensus 265 ~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 265 NEAVKIDGIILTKLDAD 281 (328)
T ss_dssp HHHSCCCEEEEECGGGC
T ss_pred HHhcCCCEEEEeCcCCc
Confidence 64322335666788854
No 290
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.73 E-value=2.4e-08 Score=99.30 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=46.1
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCC-------chHHHHHHHHHHhcCCC-eEEEEEe
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD-------ISDEFKRVITSLRGHDD-KIRVVLN 358 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~-------~~~~~~~~l~~l~~~~~-~viiv~n 358 (394)
.+.++||||+.. |.......+..+|++|+++|+.. + ...+..+.+..+...+. +++++.|
T Consensus 85 ~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviN 152 (435)
T 1jny_A 85 FFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN 152 (435)
T ss_dssp EEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred EEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEE
Confidence 678999999954 11133456789999999999986 4 22234444444444454 5899999
Q ss_pred cCCccC
Q 016165 359 KADQVD 364 (394)
Q Consensus 359 K~Dl~~ 364 (394)
|+|+.+
T Consensus 153 K~Dl~~ 158 (435)
T 1jny_A 153 KMDLTE 158 (435)
T ss_dssp CGGGSS
T ss_pred cccCCC
Confidence 999976
No 291
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.72 E-value=4e-08 Score=96.87 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=45.8
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCC-CeEEEEEecCCccCH
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHD-DKIRVVLNKADQVDT 365 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~-~~viiv~nK~Dl~~~ 365 (394)
.+.++||||+.. |.......+..+|++|+++|+.......+..+.+..+...+ .++++++||+|+.+.
T Consensus 84 ~i~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 84 RVSFIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 152 (410)
T ss_dssp EEEEEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred EEEEEECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH
Confidence 688999999832 11122234678899999999985211344444444443333 478999999999876
Q ss_pred HH
Q 016165 366 QQ 367 (394)
Q Consensus 366 ~~ 367 (394)
+.
T Consensus 153 ~~ 154 (410)
T 1kk1_A 153 EK 154 (410)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 292
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.72 E-value=1.8e-08 Score=97.26 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=55.9
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhh-h
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF-E 276 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ 276 (394)
..|+|+|.||||||||+|+|++.. ..++..|.+|.... .|. +.+++. .+... .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~---~~v~~~p~tTi~p~----------~g~-------v~~~~~------r~~~l~~ 56 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG---IEAANYPFCTIEPN----------TGV-------VPMPDP------RLDALAE 56 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCC----------SSE-------EECCCH------HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCceECce----------EEE-------EecCCc------ccceeee
Confidence 369999999999999999999976 55666666554211 000 000110 00000 0
Q ss_pred hhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCC
Q 016165 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK 332 (394)
Q Consensus 277 ~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~ 332 (394)
........-..+.++||||+..|..+.-.....| ...++++|++++++|+..
T Consensus 57 ~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~f----l~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 57 IVKPERILPTTMEFVDIAGLVAGASKGEGLGNKF----LANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCH----HHHHHTCSEEEEEEECSC
T ss_pred eecccceeeeEEEEEECCCCcccccccchHHHHH----HHHHHhcCeEEEEEecCC
Confidence 0000000112678999999987432211111111 245799999999999975
No 293
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.72 E-value=1.5e-09 Score=105.63 Aligned_cols=135 Identities=15% Similarity=0.174 Sum_probs=81.4
Q ss_pred cEEEEeecCCCchhHHHHHHHhc-----cCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccc
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRT-----SYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFL 272 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~-----~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 272 (394)
..++++|.+|+|||||+|+|++. .. ..++..|++|+....+. +.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~--~~~~~~~gtT~~~~~~~-------------------~~---------- 211 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNV--ITTSYFPGTTLDMIEIP-------------------LE---------- 211 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCC--CEEEECTTSSCEEEEEE-------------------CS----------
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccc--eeecCCCCeEEeeEEEE-------------------eC----------
Confidence 37999999999999999999998 22 55666777776543211 00
Q ss_pred hhhhhhcCCccccccceeecCCCCCchh--hhhhhcccChHHHHHHHh--hcCCEEEEEeCCCCCCchHHHHHHHHHHhc
Q 016165 273 SKFECSQMPHSLLEHITLVDTPGVLSGE--KQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRG 348 (394)
Q Consensus 273 ~~~~~~~~~~~~l~~~~l~Dt~g~lsGe--~qrv~~~~~~~~iaral~--~~~dllLl~lD~~~~~~~~~~~~~l~~l~~ 348 (394)
..+.++||||+.+.. ...+... ....+. .+.+.+++++|+... ....-+..+..+..
T Consensus 212 -------------~~~~liDtPG~~~~~~~~~~l~~~-----~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~l~~l~~ 272 (369)
T 3ec1_A 212 -------------SGATLYDTPGIINHHQMAHFVDAR-----DLKIITPKREIHPRVYQLNEGQT-LFFGGLARLDYIKG 272 (369)
T ss_dssp -------------TTCEEEECCSCCCCSSGGGGSCTT-----THHHHSCSSCCCCEEEEECTTEE-EEETTTEEEEEEES
T ss_pred -------------CCeEEEeCCCcCcHHHHHHHHhHH-----HHHHHhcccccCceEEEEcCCce-EEECCEEEEEEccC
Confidence 146799999998621 2222211 112222 678999999998430 00001111333445
Q ss_pred CCCeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 349 HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 349 ~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
.+.++++++||+|.....+....+..+.-+.|..
T Consensus 273 ~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~ 306 (369)
T 3ec1_A 273 GRRSFVCYMANELTVHRTKLEKADSLYANQLGEL 306 (369)
T ss_dssp SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTT
T ss_pred CCceEEEEecCCcccccccHHHHHHHHHHhcCCc
Confidence 5679999999999755444333344444444543
No 294
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.70 E-value=1.2e-08 Score=99.62 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=31.8
Q ss_pred cccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccce
Q 016165 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR 235 (394)
Q Consensus 196 ~~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r 235 (394)
.+.+++|+|+||||||||+|+|+|... +.++..|.++.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~--a~~~~~p~tTi 56 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL--GNPANYPYATI 56 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT--TSTTCCSSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc--ccccCCCceee
Confidence 345999999999999999999999873 47777777765
No 295
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.70 E-value=1.5e-08 Score=101.55 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=41.2
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCch-------HHHHHHHHHHhcCCCe-EEEEEe
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDIS-------DEFKRVITSLRGHDDK-IRVVLN 358 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~-------~~~~~~l~~l~~~~~~-viiv~n 358 (394)
.+.++||||+.. |.......+..+|++|+++|+.. +.. .+..+.+..+...+.| +++++|
T Consensus 122 ~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN 189 (467)
T 1r5b_A 122 RFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARR-GEFEAGFERGGQTREHAVLARTQGINHLVVVIN 189 (467)
T ss_dssp EEEECCCCC----------------------TTSCSEEEEEEECST-THHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred EEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCc-CccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence 678999999843 11123345789999999999976 210 1334445545556776 999999
Q ss_pred cCCccC
Q 016165 359 KADQVD 364 (394)
Q Consensus 359 K~Dl~~ 364 (394)
|+|+.+
T Consensus 190 K~Dl~~ 195 (467)
T 1r5b_A 190 KMDEPS 195 (467)
T ss_dssp CTTSTT
T ss_pred CccCCC
Confidence 999953
No 296
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.67 E-value=2.9e-09 Score=103.54 Aligned_cols=138 Identities=13% Similarity=0.170 Sum_probs=78.5
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCC----CCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccch
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYP----GAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS 273 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~----~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 273 (394)
..++++|.+|+|||||+|.|++...- ...++..|++|+....+. +.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~-------------------~~----------- 210 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP-------------------LD----------- 210 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE-------------------SS-----------
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE-------------------ec-----------
Confidence 37999999999999999999997420 033555666665443211 00
Q ss_pred hhhhhcCCccccccceeecCCCCCchh--hhhhhcccChHHHHHHH-hhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCC
Q 016165 274 KFECSQMPHSLLEHITLVDTPGVLSGE--KQRTQRAYDFTGVTSWF-AAKCDLILLLFDPHKLDISDEFKRVITSLRGHD 350 (394)
Q Consensus 274 ~~~~~~~~~~~l~~~~l~Dt~g~lsGe--~qrv~~~~~~~~iaral-~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~ 350 (394)
..+.++||||+.+.. ...+.. ..+...+ ..+.+..++.+|+... ....-+..+..+...+
T Consensus 211 ------------~~~~liDtPG~~~~~~~~~~l~~----~~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~~d~l~~~~ 273 (368)
T 3h2y_A 211 ------------EESSLYDTPGIINHHQMAHYVGK----QSLKLITPTKEIKPMVFQLNEEQT-LFFSGLARFDYVSGGR 273 (368)
T ss_dssp ------------SSCEEEECCCBCCTTSGGGGSCH----HHHHHHSCSSCCCCEEEEECTTEE-EEETTTEEEEEEESSS
T ss_pred ------------CCeEEEeCCCcCcHHHHHHHhhH----HHHHHhccccccCceEEEEcCCCE-EEEcceEEEEEecCCC
Confidence 146799999998721 111210 1121111 3677888888888430 0000111233344456
Q ss_pred CeEEEEEecCCccCHHHHHHHHhHhhhcccee
Q 016165 351 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKV 382 (394)
Q Consensus 351 ~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i 382 (394)
.++++++||+|..........+..+.-+.|..
T Consensus 274 ~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~ 305 (368)
T 3h2y_A 274 RAFTCHFSNRLTIHRTKLEKADELYKNHAGDL 305 (368)
T ss_dssp EEEEEEECTTSCEEEEEHHHHHHHHHHHBTTT
T ss_pred ceEEEEecCccccccccHHHHHHHHHHHhCCc
Confidence 79999999999865555555445555555543
No 297
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.67 E-value=1.3e-07 Score=91.22 Aligned_cols=57 Identities=14% Similarity=-0.005 Sum_probs=37.3
Q ss_pred HHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHHHHHHHHhHhhhcc
Q 016165 313 VTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSL 379 (394)
Q Consensus 313 iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~ 379 (394)
+++++..+||++++. -.. ..+..+.+..+...|.++++++ |+.+.+..+++++.+..
T Consensus 189 La~aL~~~PdvillD--Ep~---d~e~~~~~~~~~~~G~~vl~t~-----H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 189 LRSALREDPDIILVG--EMR---DLETIRLALTAAETGHLVFGTL-----HTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp HHHHTTSCCSEEEES--CCC---SHHHHHHHHHHHHTTCEEEEEE-----SCSSHHHHHHHHHHTSC
T ss_pred HHHHhhhCcCEEecC--CCC---CHHHHHHHHHHHhcCCEEEEEE-----ccChHHHHHHHHhhhcC
Confidence 889999999999872 221 2344555555566688888888 54444444477777643
No 298
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=98.66 E-value=7.8e-09 Score=77.60 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC----CCHHHHHH----HHHHHhcCCCCCCCHHHHHHHHHHHH
Q 016165 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN----LSRQDLKQ----VWAIADAKRQGYLGYREFIAAMQLIS 81 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~----L~~~~L~~----Iw~l~d~~~~g~l~~~ef~~a~~Li~ 81 (394)
||+++...+..+|..+|.|++|+|+.++...++...| ++.+.+.+ +|..+|.+++|.++.+||+.++.-+-
T Consensus 1 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~~~~~ 79 (83)
T 1yx7_A 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELL 79 (83)
T ss_dssp CCSCSCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHhhHHHH
Confidence 5677788899999999999999999999999999877 78888899 99999999999999999997766553
No 299
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.66 E-value=7.7e-09 Score=107.58 Aligned_cols=126 Identities=21% Similarity=0.247 Sum_probs=78.9
Q ss_pred EEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCcee-eeccCCCCCcccccccccchhhhhh
Q 016165 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV-AVQADMPFSGLTTFGTAFLSKFECS 278 (394)
Q Consensus 200 vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (394)
|+|+|..++|||||...|+-.. ..++..-........++..+.+.-.|.|+ .....+.+.+
T Consensus 5 i~IiaHvD~GKTTL~e~LL~~~---G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--------------- 66 (638)
T 3j25_A 5 IGVLAHVDAGKTTLTESLLYNS---GAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--------------- 66 (638)
T ss_dssp CEEECCSTTSSHHHHHHHHHHH---TCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS---------------
T ss_pred EEEEcCCCCCHHHHHHHHHHHc---CCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC---------------
Confidence 7999999999999999996443 11110000000000011111112223333 1122222222
Q ss_pred cCCccccccceeecCCCCCc--hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEE
Q 016165 279 QMPHSLLEHITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (394)
Q Consensus 279 ~~~~~~l~~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv 356 (394)
..++|+||||+.+ +|-. ..++-+|..|+++|+.. +...+...+++.+.+.+.|.+++
T Consensus 67 -------~~iNlIDTPGH~DF~~Ev~-------------raL~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~lp~i~~ 125 (638)
T 3j25_A 67 -------TKVNIIDTPGHMDFLAEVY-------------RSLSVLDGAILLISAKD-GVQAQTRILFHALRKMGIPTIFF 125 (638)
T ss_dssp -------CBCCCEECCCSSSTHHHHH-------------HHHTTCSEEECCEESSC-TTCSHHHHHHHHHHHHTCSCEEC
T ss_pred -------EEEEEEECCCcHHHHHHHH-------------HHHHHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCeEEE
Confidence 2789999999987 5532 23467899999999986 67777778888888889999999
Q ss_pred EecCCccC
Q 016165 357 LNKADQVD 364 (394)
Q Consensus 357 ~nK~Dl~~ 364 (394)
+||+|...
T Consensus 126 INKmDr~~ 133 (638)
T 3j25_A 126 INKIDQNG 133 (638)
T ss_dssp CEECCSSS
T ss_pred Eecccccc
Confidence 99999753
No 300
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=98.65 E-value=8.5e-08 Score=73.37 Aligned_cols=69 Identities=23% Similarity=0.363 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
+++++...+..+|..+|++++|+|+.++...++...| ++.+.+..+|..+|.+++|.++.+||+.+|.-
T Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~ 73 (92)
T 2kn2_A 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMT 73 (92)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence 5778899999999999999999999999999999988 78999999999999999999999999877653
No 301
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.64 E-value=6.5e-08 Score=95.32 Aligned_cols=68 Identities=26% Similarity=0.276 Sum_probs=44.4
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCC-CeEEEEEecCCccCH
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHD-DKIRVVLNKADQVDT 365 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~-~~viiv~nK~Dl~~~ 365 (394)
.+.++||||+.. |.......+..+|++|+++|+.......+..+.+..+...+ .+++++.||+|+.+.
T Consensus 82 ~i~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 82 RVSFVDSPGHET-----------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp EEEEEECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCT
T ss_pred EEEEEECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCH
Confidence 688999999732 11111223567899999999985211344445554444434 479999999999654
No 302
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.63 E-value=3.2e-08 Score=91.18 Aligned_cols=50 Identities=24% Similarity=0.196 Sum_probs=35.2
Q ss_pred cCCEEEEEeCCCCC--CchHHHHHHHHHHh----cCCCeEEEEEecCCccCHHHHH
Q 016165 320 KCDLILLLFDPHKL--DISDEFKRVITSLR----GHDDKIRVVLNKADQVDTQQLM 369 (394)
Q Consensus 320 ~~dllLl~lD~~~~--~~~~~~~~~l~~l~----~~~~~viiv~nK~Dl~~~~~~~ 369 (394)
++|++|+++|++.. .....+..++..+. ..+.|+++|.||+|+.+...+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~ 217 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR 217 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHH
Confidence 79999999999763 33444455555443 2478999999999997655543
No 303
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.63 E-value=8.4e-09 Score=110.59 Aligned_cols=123 Identities=11% Similarity=0.161 Sum_probs=70.4
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSG 263 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g 263 (394)
+.+++++++++.. +++|+|||||||||||+++++...........|... ..+
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~-~~i------------------------- 713 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEE-ATI------------------------- 713 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSE-EEE-------------------------
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchh-hhh-------------------------
Confidence 3467788888754 999999999999999999987542100000011100 000
Q ss_pred ccccccccchhhhhhcCCccccccceeec----CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCC
Q 016165 264 LTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKL 333 (394)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~D----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~ 333 (394)
..+..++..+++.| ....++ |+++++. ++++ +.+|+++|+ ++|+..
T Consensus 714 ---------------~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~-------il~~-a~~p~LlLLDEP~~GlD~~~- 769 (918)
T 3thx_B 714 ---------------GIVDGIFTRMGAADNIYKGRSTFMEELTDTAE-------IIRK-ATSQSLVILDELGRGTSTHD- 769 (918)
T ss_dssp ---------------ECCSEEEEEC----------CCHHHHHHHHHH-------HHHH-CCTTCEEEEESTTTTSCHHH-
T ss_pred ---------------hHHHHHHHhCChHHHHHHhHHHhhHHHHHHHH-------HHHh-ccCCCEEEEeCCCCCCCHHH-
Confidence 00112223444444 223344 4555555 5555 889999998 666654
Q ss_pred CchHHHH-HHHHHHhc-CCCeEEEEEecC
Q 016165 334 DISDEFK-RVITSLRG-HDDKIRVVLNKA 360 (394)
Q Consensus 334 ~~~~~~~-~~l~~l~~-~~~~viiv~nK~ 360 (394)
...+. .+++.+.+ .+.++++++|..
T Consensus 770 --~~~i~~~il~~L~~~~g~tvl~vTH~~ 796 (918)
T 3thx_B 770 --GIAIAYATLEYFIRDVKSLTLFVTHYP 796 (918)
T ss_dssp --HHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred --HHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence 44554 67777754 588888888543
No 304
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.62 E-value=2.3e-10 Score=116.54 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=32.3
Q ss_pred CcccccCCC-Cccc--EEEEeecCCCchhHHHHH--HHhcc
Q 016165 186 SPLLTNSDF-DAKP--MVMLLGQYSTGKTTFIKH--LLRTS 221 (394)
Q Consensus 186 ~~~l~~~~~-~~~~--~vaIvG~~gaGKSTLln~--L~g~~ 221 (394)
..+|+++++ .+.+ +++|+|+||||||||+++ ++|..
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 568999999 7766 999999999999999999 67877
No 305
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=98.62 E-value=1e-07 Score=71.95 Aligned_cols=71 Identities=6% Similarity=0.115 Sum_probs=65.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHH---HHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 7 PIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQD---LKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~---L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
..-.+|+++...+..+|..+|.+++|+|+.++...++...| ++... +.+++..+|.+++|.++. ||+.+|.
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~~~~ 79 (86)
T 1j7q_A 4 KARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWLTLCS 79 (86)
T ss_dssp CCCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHHHHH
Confidence 44668999999999999999999999999999999999988 67788 999999999999999999 9987764
No 306
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.61 E-value=2.1e-08 Score=108.47 Aligned_cols=66 Identities=29% Similarity=0.237 Sum_probs=47.5
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCe-EEEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~-viiv~nK~Dl~~ 364 (394)
.+.++||||+.. |.......+..+|++|+++|+.. +...+..+.+..+...+.| +|+++||+|+.+
T Consensus 360 kI~IIDTPGHed-----------F~~~mi~gas~AD~aILVVDAtd-Gv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 360 HYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLGRQVGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp EEEEEECCCHHH-----------HHHHHHHTSCCCSEEEEEEETTT-CSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC
T ss_pred EEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEcCCc-cCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Confidence 678999999832 11233455789999999999976 3344445555555555777 789999999975
No 307
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.58 E-value=6.7e-08 Score=93.46 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=40.9
Q ss_pred ccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 286 ~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
..+.|+||||+... ...++..+|++|+++|+.. ..+...+...+ ...|+++|+||+|+.+.
T Consensus 172 ~~~iiiDTpGi~~~--------------~~~~~~~aD~vl~V~d~~~---~~~~~~l~~~~--~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 172 FDVILIETVGVGQS--------------EVAVANMVDTFVLLTLART---GDQLQGIKKGV--LELADIVVVNKADGEHH 232 (355)
T ss_dssp CCEEEEEECSCSSH--------------HHHHHTTCSEEEEEEESST---TCTTTTCCTTS--GGGCSEEEEECCCGGGH
T ss_pred CCEEEEeCCCCCcH--------------HHHHHHhCCEEEEEECCCC---CccHHHHHHhH--hhcCCEEEEECCCCcCh
Confidence 36788999997542 1234689999999999865 22111111111 13488999999998755
Q ss_pred HHH
Q 016165 366 QQL 368 (394)
Q Consensus 366 ~~~ 368 (394)
...
T Consensus 233 ~~~ 235 (355)
T 3p32_A 233 KEA 235 (355)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 308
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.57 E-value=2.3e-08 Score=108.71 Aligned_cols=141 Identities=15% Similarity=0.115 Sum_probs=83.6
Q ss_pred CcccccCCCCcc---------cEEEEeecCCCchhHHHHHHHhccCCCCCcC-CCcccceeEEEEecCcccccCCceeee
Q 016165 186 SPLLTNSDFDAK---------PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIG-PEPTTDRFVVVMSGVDDRSIPGNTVAV 255 (394)
Q Consensus 186 ~~~l~~~~~~~~---------~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs-~~p~t~r~~i~~~~~~~~~~~~~~~~~ 255 (394)
..+++++++... .+++|+||||+||||||+++ |...+-+.++ ..|.
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq----------------------- 824 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPA----------------------- 824 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEES-----------------------
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEecc-----------------------
Confidence 458888888763 59999999999999999999 8773100111 1111
Q ss_pred ccCCCCCcccccccccchhhhhhcCCccccccceeecC--CC--CCchhhhhhhcccChHHHHHHHhhcCCEEEE-----
Q 016165 256 QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDT--PG--VLSGEKQRTQRAYDFTGVTSWFAAKCDLILL----- 326 (394)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~l~Dt--~g--~lsGe~qrv~~~~~~~~iaral~~~~dllLl----- 326 (394)
... .++.. +.++..+++.|. .| .++++..++. ++++++.+++++|+
T Consensus 825 -~~~---~l~v~--------------d~I~~rig~~d~~~~~~stf~~em~~~a-------~al~la~~~sLlLLDEp~~ 879 (1022)
T 2o8b_B 825 -EVC---RLTPI--------------DRVFTRLGASDRIMSGESTFFVELSETA-------SILMHATAHSLVLVDELGR 879 (1022)
T ss_dssp -SEE---EECCC--------------SBEEEECC---------CHHHHHHHHHH-------HHHHHCCTTCEEEEECTTT
T ss_pred -CcC---CCCHH--------------HHHHHHcCCHHHHhhchhhhHHHHHHHH-------HHHHhCCCCcEEEEECCCC
Confidence 000 00000 111123333331 11 2225666676 88999999999998
Q ss_pred EeCCCCCCchHHHHHHHHHHhcC-CCeEEEEEecCCccCHHHHHHH-HhHhhhccceee
Q 016165 327 LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVL 383 (394)
Q Consensus 327 ~lD~~~~~~~~~~~~~l~~l~~~-~~~viiv~nK~Dl~~~~~~~~~-~~~~~~~~G~i~ 383 (394)
++|+.. -......+++.+.+. +.++++++ |+.+.+... +++.+ .+|++.
T Consensus 880 Gtd~~d--g~~~~~~il~~L~~~~g~~vl~~T-----H~~el~~~~~d~~~v-~~g~~~ 930 (1022)
T 2o8b_B 880 GTATFD--GTAIANAVVKELAETIKCRTLFST-----HYHSLVEDYSQNVAV-RLGHMA 930 (1022)
T ss_dssp TSCHHH--HHHHHHHHHHHHHHTSCCEEEEEC-----CCHHHHHHTSSCSSE-EEEEEE
T ss_pred CCChHH--HHHHHHHHHHHHHhcCCCEEEEEe-----CCHHHHHHhCCccee-ecCeEE
Confidence 455432 023356788888765 78888887 777776665 55444 457765
No 309
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.55 E-value=5.8e-08 Score=103.04 Aligned_cols=143 Identities=9% Similarity=-0.018 Sum_probs=78.2
Q ss_pred cccccCCCCcc-cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCccc
Q 016165 187 PLLTNSDFDAK-PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLT 265 (394)
Q Consensus 187 ~~l~~~~~~~~-~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 265 (394)
.+++++++... .+++|+||||||||||+++++|...+...-...|.. +..+. +
T Consensus 596 ~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~-~~~i~-------------~------------ 649 (800)
T 1wb9_A 596 FIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQ-KVEIG-------------P------------ 649 (800)
T ss_dssp CCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSS-EEEEC-------------C------------
T ss_pred eeeecccccCCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchh-cccce-------------e------------
Confidence 46777888722 299999999999999999999975210000011111 00000 0
Q ss_pred ccccccchhhhhhcCCccccccceeec----CCCCCchhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCch
Q 016165 266 TFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDIS 336 (394)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~l~D----t~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~ 336 (394)
+.+++..++..| .....+++..++. .+...+.+|+++|+ ++|+.. .
T Consensus 650 ---------------~~~i~~~~~~~d~l~~~~stf~~e~~~~~-------~il~~a~~psLlLLDEp~~Gtd~~d---~ 704 (800)
T 1wb9_A 650 ---------------IDRIFTRVGAADDLASGRSTFMVEMTETA-------NILHNATEYSLVLMDEIGRGTSTYD---G 704 (800)
T ss_dssp ---------------CCEEEEEEC-----------CHHHHHHHH-------HHHHHCCTTEEEEEESCCCCSSSSH---H
T ss_pred ---------------HHHHHhhCCHHHHHHhhhhhhhHHHHHHH-------HHHHhccCCCEEEEECCCCCCChhH---H
Confidence 000111222222 1112233444444 33345789999999 577654 3
Q ss_pred HH-HHHHHHHHhc-CCCeEEEEEecCCccCHHHHHHHHhHhhhccceeeec
Q 016165 337 DE-FKRVITSLRG-HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNT 385 (394)
Q Consensus 337 ~~-~~~~l~~l~~-~~~~viiv~nK~Dl~~~~~~~~~~~~~~~~~G~i~~~ 385 (394)
.. ...+++.+.+ .+.++++++| +.+...-.++...+.++++...
T Consensus 705 ~~i~~~ll~~l~~~~g~~vl~~TH-----~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 705 LSLAWACAENLANKIKALTLFATH-----YFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECS-----CGGGGGHHHHSTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEeC-----CHHHHHHhhhhhceEEEEEEEE
Confidence 33 3678888877 4788888884 4433322366667777776543
No 310
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.54 E-value=3.3e-08 Score=88.99 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.4
Q ss_pred CcccEEEEeecCCCchhHHHHHHHhccC
Q 016165 195 DAKPMVMLLGQYSTGKTTFIKHLLRTSY 222 (394)
Q Consensus 195 ~~~~~vaIvG~~gaGKSTLln~L~g~~~ 222 (394)
..+..++|+||||||||||+++|+|...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445999999999999999999999884
No 311
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.54 E-value=5.5e-08 Score=92.75 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=50.9
Q ss_pred CCCCCc-hhhhhhhcccChHHHHHHHh----hcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCc
Q 016165 293 TPGVLS-GEKQRTQRAYDFTGVTSWFA----AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQ 362 (394)
Q Consensus 293 t~g~ls-Ge~qrv~~~~~~~~iaral~----~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl 362 (394)
.++.+| ||+|++. +|++++ .+|+++|+ .+|+.. ...+.++++.+. .+..+|+++
T Consensus 216 ~~~~lS~Gq~q~v~-------ia~~l~~~~~~~~~~lllDEp~~~LD~~~---~~~l~~~l~~~~-~~~~vi~~t----- 279 (322)
T 1e69_A 216 KLSLLSGGEKALVG-------LALLFALMEIKPSPFYVLDEVDSPLDDYN---AERFKRLLKENS-KHTQFIVIT----- 279 (322)
T ss_dssp BGGGSCHHHHHHHH-------HHHHHHHTTTSCCSEEEEESCCSSCCHHH---HHHHHHHHHHHT-TTSEEEEEC-----
T ss_pred chhhCCHHHHHHHH-------HHHHHHHhccCCCCEEEEeCCCCCCCHHH---HHHHHHHHHHhc-CCCeEEEEE-----
Confidence 356788 9999999 999987 57899998 677655 667788888874 467788877
Q ss_pred cCHHHHHHHHhH--hhhcccee
Q 016165 363 VDTQQLMRVYGA--LMWSLGKV 382 (394)
Q Consensus 363 ~~~~~~~~~~~~--~~~~~G~i 382 (394)
|+.+....+|++ +.+.+|..
T Consensus 280 H~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 280 HNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CCTTGGGGCSEEEEEEESSSCE
T ss_pred CCHHHHhhCceEEEEEEeCCEE
Confidence 443222222543 55666654
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.54 E-value=1.9e-09 Score=102.36 Aligned_cols=107 Identities=12% Similarity=0.055 Sum_probs=57.2
Q ss_pred ccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhh
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (394)
+.+++|+|+||||||||+++|+|...| ..+...+.+..++....+. +...+..+ +. .++ .+...
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~--------~~G~~~v~~v~qd~~~~~~-t~~e~~~~-~~---~~g---~~~~~ 153 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR--------WDHHPRVDLVTTDGFLYPN-AELQRRNL-MH---RKG---FPESY 153 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT--------STTCCCEEEEEGGGGBCCH-HHHHHTTC-TT---CTT---SGGGB
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc--------cCCCCeEEEEecCccCCcc-cHHHHHHH-HH---hcC---CChHH
Confidence 349999999999999999999998831 1111123333333222222 11111000 00 000 00011
Q ss_pred hhcCCccccccce--ee-cCCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE
Q 016165 277 CSQMPHSLLEHIT--LV-DTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (394)
Q Consensus 277 ~~~~~~~~l~~~~--l~-Dt~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl 326 (394)
+.+.+.+.++.++ .. -.+..+| |++||+. +|++++.+|+++|+
T Consensus 154 d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~-------~a~al~~~p~ilIl 200 (312)
T 3aez_A 154 NRRALMRFVTSVKSGSDYACAPVYSHLHYDIIP-------GAEQVVRHPDILIL 200 (312)
T ss_dssp CHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEE-------EEEEEECSCSEEEE
T ss_pred HHHHHHHHHHHhCCCcccCCcccCChhhhhhhh-------hHHHhccCCCEEEE
Confidence 1122223333333 11 1345667 8999998 77788999999998
No 313
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.54 E-value=7.3e-08 Score=93.94 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=47.2
Q ss_pred ccEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccceeEEEEecCcccccCCceeeeccCCCCCcccccccccchhhh
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (394)
+..|+|+|+||||||||+|+|+|.. ..++..|.+|..... ..+ .+++.. .. ++. .
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~---~~~~~~p~tTi~p~~------------g~v-----~v~~~r-~~--~l~--~ 76 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQ---ASAENFPFCTIDPNE------------SRV-----PVPDER-FD--FLC--Q 76 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC----------------CCSE------------EEE-----ECCCHH-HH--HHH--H
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---ccccCCCccccCcee------------EEE-----EECCcc-ce--eec--c
Confidence 4489999999999999999999987 556666666542110 000 000100 00 000 0
Q ss_pred hhcCCccccccceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCC
Q 016165 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK 332 (394)
Q Consensus 277 ~~~~~~~~l~~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~ 332 (394)
........-..+.++||||+..|..++-.... .....++++|++++++|+..
T Consensus 77 ~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~----~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 77 YHKPASKIPAFLNVVDIAGLVKGAHNGQGLGN----AFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHCCSEEECCEEEEEECCC-----------CC----HHHHHHHTSSSEEEEEEC--
T ss_pred ccCcccccccccEEEECCCcccccchhhHHHH----HHHHHHHhcCeEEEEEecCC
Confidence 00000111125789999999764322111100 23466899999999999864
No 314
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.53 E-value=6.4e-08 Score=101.95 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=53.9
Q ss_pred cceeecCCCCCc--hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.++|+||||+.+ +|-. +.++=+|..|+++|+.. +...+...+++...+.+.|.++++||+|...
T Consensus 86 ~iNlIDTPGHvDF~~Ev~-------------~aLr~~DgavlvVDave-GV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 86 RVNVIDTPGHVDFTIEVE-------------RSLRVLDGAVVVFCGTS-GVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEEEECCCSCTTCHHHHH-------------HHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred EEEEEeCCCCcccHHHHH-------------HHHHHhCeEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 789999999987 5532 23567899999999986 7888888899998888999999999999753
No 315
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=98.50 E-value=4.3e-07 Score=76.38 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCC-CCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 8 IGSCSKDHQKIYLEWFNYADSDG-DGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~-~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.-.+|+++...+.++|..+|.++ +|+|+.++...++...| ++...+..+|..+|.+++|.++.+||..++...
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~~~~~~ 84 (161)
T 1dtl_A 9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRS 84 (161)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 34689999999999999999999 99999999999999887 789999999999999999999999999888765
No 316
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=98.49 E-value=4e-07 Score=76.36 Aligned_cols=75 Identities=15% Similarity=0.273 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhhC-CCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 6 GPIGSCSKDHQKIYLEWFNYAD-SDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 6 ~~~~~ls~~e~~~y~~~F~~~d-~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
++...+|+++...+.++|..+| .+++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||+.++...
T Consensus 2 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 79 (158)
T 2jnf_A 2 GDVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARF 79 (158)
T ss_dssp CCSTTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSCSHHHHHHHHHHHCTTCCSEECHHHHHHHHHHH
T ss_pred cchhhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3556799999999999999999 99999999999999999877 678899999999999999999999998887643
No 317
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=98.49 E-value=3.4e-07 Score=65.21 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=55.8
Q ss_pred HHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 19 YLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 19 y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+.++|..+|++++|+|+.++...++...| ++.+.+..++..+|.+++|.++.+||+.+|.
T Consensus 3 l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~ 64 (67)
T 1tiz_A 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIE 64 (67)
T ss_dssp HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 57899999999999999999999999877 7899999999999999999999999987764
No 318
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=98.48 E-value=5.2e-07 Score=75.74 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=68.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 7 PIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
..-.+|+++...+.++|..+|.+++|+|+-++...++...| ++...+..+|..+|.+++|.++.+||..++.-.
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 88 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEK 88 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHH
Confidence 44679999999999999999999999999999999999987 788999999999999999999999998887643
No 319
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=98.48 E-value=3.6e-07 Score=70.59 Aligned_cols=65 Identities=25% Similarity=0.440 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+..+.+.++|..+|.|++|+|+.++.+.++...| ++.+.+.++|..+|.+++|.++.+||+.+|.
T Consensus 26 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 92 (94)
T 2kz2_A 26 DSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 92 (94)
T ss_dssp SCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 3556789999999999999999999999999877 7899999999999999999999999987763
No 320
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=98.48 E-value=9.1e-08 Score=69.20 Aligned_cols=63 Identities=27% Similarity=0.376 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
....+..+|..+|++++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||+.+|
T Consensus 4 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 68 (71)
T 2b1u_A 4 GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 68 (71)
T ss_dssp THHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSSSSEEETTHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 456789999999999999999999999999887 889999999999999999999999998765
No 321
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=98.46 E-value=3.3e-07 Score=76.06 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.+|+++.+.+.++|..+|++++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||..++...
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 76 (153)
T 3ox6_A 4 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPK 76 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHH
Confidence 58999999999999999999999999999999999886 788999999999999999999999998887543
No 322
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=98.46 E-value=9.1e-07 Score=67.62 Aligned_cols=73 Identities=10% Similarity=0.304 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-ccchHHHHHHHHH-----c--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-----S--NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-----s--~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~ 83 (394)
+++...+..+|..+| .|++| +|+.++.+.++.. . .++...+.+++..+|.+++|.++.+||+.+|.-+..+
T Consensus 5 ~~~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~~ 84 (93)
T 1k2h_A 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (93)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 356778999999999 79999 9999999999987 4 4899999999999999999999999999988766554
Q ss_pred hc
Q 016165 84 QD 85 (394)
Q Consensus 84 ~~ 85 (394)
.+
T Consensus 85 ~~ 86 (93)
T 1k2h_A 85 CN 86 (93)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 323
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=98.45 E-value=4.6e-07 Score=74.78 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.+|+++.+.+.++|..+|.+++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||+.++...
T Consensus 4 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 76 (147)
T 4ds7_A 4 NLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQ 76 (147)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHh
Confidence 58999999999999999999999999999999999977 788899999999999999999999999888654
No 324
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=98.44 E-value=5.6e-07 Score=71.02 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
.+ +++...+..+|..+|+|++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||+.+|
T Consensus 26 ~l-~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~i~~~eF~~~~ 94 (107)
T 2d58_A 26 DL-PSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMM 94 (107)
T ss_dssp TH-HHHHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSEECHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 35 78899999999999999999999999999999988 789999999999999999999999998765
No 325
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=98.44 E-value=6.2e-07 Score=76.09 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
...+|++++..+.++|..+|.|++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||..++.-.
T Consensus 19 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 93 (169)
T 3qrx_A 19 RVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAK 93 (169)
T ss_dssp -CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999987 578999999999999999999999999888654
No 326
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=98.43 E-value=1.3e-07 Score=70.53 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC---CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN---LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~---L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
++....+. +|..+|.|++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||+.+|.
T Consensus 5 ~~~~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 72 (81)
T 1c7v_A 5 DDEEEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIK 72 (81)
T ss_dssp --CHHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHH
T ss_pred ccHHHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45567788 99999999999999999999999888 8899999999999999999999999987764
No 327
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=98.43 E-value=3.1e-07 Score=67.84 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=57.2
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHcC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN-LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~-L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
+.+..+|..+|++++|+|+.++...++...| ++.+.+..+|..+|.+++|.++.+||+.+|.-
T Consensus 3 ~~l~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 66 (78)
T 1k9u_A 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCNA 66 (78)
T ss_dssp CHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 3578899999999999999999999988765 88999999999999999999999999887753
No 328
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=98.42 E-value=8.4e-07 Score=69.60 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhhC-CCCC-CccchHHHHHHHHH-------cCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Q 016165 14 DHQKIYLEWFNYAD-SDGD-GRITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (394)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~-g~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~ 84 (394)
.....+.+.|+.+| .|++ |+|+.++.+.++.+ ..++.+.+.+|..-+|.|+||.++++||+..|.-+..+.
T Consensus 7 ~~i~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~~~~~ 86 (101)
T 3nso_A 7 QAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYC 86 (101)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 34568899999997 8887 99999999999986 347799999999999999999999999999888777776
Q ss_pred c
Q 016165 85 D 85 (394)
Q Consensus 85 ~ 85 (394)
+
T Consensus 87 ~ 87 (101)
T 3nso_A 87 H 87 (101)
T ss_dssp C
T ss_pred H
Confidence 6
No 329
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.42 E-value=4.3e-07 Score=74.75 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
|+++...+.++|..+|.+++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||..+|.-
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 70 (142)
T 2bl0_C 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGR 70 (142)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCeeeHHHHHHHHHH
Confidence 578999999999999999999999999999998877 67889999999999999999999999888765
No 330
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=98.42 E-value=4.8e-07 Score=78.24 Aligned_cols=67 Identities=21% Similarity=0.383 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
++++...+.++|..+|.|++|+|+.++...++...|++++.+..++..+|.+++|.++.+||+.+|.
T Consensus 34 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~ 100 (180)
T 3mse_B 34 INNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGCY 100 (180)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCCSEECHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4888999999999999999999999999999999999999999999999999999999999986553
No 331
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.40 E-value=1.4e-07 Score=91.33 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=27.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccc
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD 234 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~ 234 (394)
.|+|+|+||||||||+|+|++.. ..++..|.+|
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~---~~v~~~p~~T 35 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN---ALAANYPFAT 35 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH---TTCSSCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CcccCCCCce
Confidence 58999999999999999999986 5555566554
No 332
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=98.39 E-value=7.7e-07 Score=71.31 Aligned_cols=79 Identities=9% Similarity=0.266 Sum_probs=66.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhC-CCCCC-ccchHHHHHHHHH-----c--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 7 PIGSCSKDHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-----S--NLSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-----s--~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
++.+.+.++...+.++|..+| .|++| +|+.++.+.++.. - .++.+.+.++..-+|.|+||.++++||+..|
T Consensus 12 ~~~s~~~~~~~~l~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m 91 (113)
T 2lnk_A 12 SMACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 91 (113)
T ss_dssp -CCCHHHHHHHHHHHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 445556678889999999999 89997 9999999999976 2 3678899999999999999999999999888
Q ss_pred HHHHHHhc
Q 016165 78 QLISLVQD 85 (394)
Q Consensus 78 ~Li~~~~~ 85 (394)
.-...+.+
T Consensus 92 ~~~~~~~~ 99 (113)
T 2lnk_A 92 SCIAMMCN 99 (113)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655544
No 333
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.39 E-value=1.7e-08 Score=86.15 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=36.0
Q ss_pred eeeeeecCCcCcccccCCCCccc--EEEEeecCCCchhHHHHHHHhcc
Q 016165 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+.++.|++ ..++++++|++.+ +++|+||||||||||+++|+|..
T Consensus 12 ~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 12 FSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33445554 4578888888877 99999999999999999999988
No 334
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.39 E-value=1.2e-07 Score=91.22 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=26.9
Q ss_pred cccCCCCcc-cEEEEeecCCCchhHHHHHHHhccC
Q 016165 189 LTNSDFDAK-PMVMLLGQYSTGKTTFIKHLLRTSY 222 (394)
Q Consensus 189 l~~~~~~~~-~~vaIvG~~gaGKSTLln~L~g~~~ 222 (394)
++++++... .+++|+|+||||||||+|+|+|...
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 444444333 3899999999999999999999884
No 335
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=98.39 E-value=1.5e-06 Score=67.78 Aligned_cols=72 Identities=13% Similarity=0.352 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhhC-CCCCC-ccchHHHHHHHHH-------cCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Q 016165 14 DHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (394)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~ 84 (394)
+....+.+.|+.+| .|++| +|+.++.+.++.+ ..++...+.++..-+|.|+||.++++||+.+|.-+..+.
T Consensus 8 ~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~~ 87 (98)
T 3n22_A 8 QALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALITVMS 87 (98)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 44578999999997 88985 9999999999986 246899999999999999999999999999987666655
Q ss_pred c
Q 016165 85 D 85 (394)
Q Consensus 85 ~ 85 (394)
+
T Consensus 88 ~ 88 (98)
T 3n22_A 88 N 88 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 336
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.38 E-value=6.6e-08 Score=73.12 Aligned_cols=67 Identities=28% Similarity=0.391 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAA 76 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a 76 (394)
.+++++...+.++|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+
T Consensus 16 ~l~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~ 84 (87)
T 1s6j_A 16 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 84 (87)
T ss_dssp SSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSEECHHHHTTC
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 46777778899999999999999999999999999988 78999999999999999999999999643
No 337
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=98.38 E-value=3.4e-07 Score=65.17 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=53.9
Q ss_pred HHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 20 LEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 20 ~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
.++|..+|.|++|+|+.++.+.++...| ++.+.+..+|..+|.+++|.++.+||..+|.
T Consensus 3 ~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp CHHHHHHCTTCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHT
T ss_pred HHHHHHHCCCCCCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 4789999999999999999999998766 7788999999999999999999999987764
No 338
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=98.37 E-value=9.6e-07 Score=75.72 Aligned_cols=71 Identities=23% Similarity=0.366 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.+|+++.+.+.++|..+|.|++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||..++.-.
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~EF~~~~~~~ 76 (179)
T 2f2o_A 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76 (179)
T ss_dssp --CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCCCcHHHHHHHHHHH
Confidence 58999999999999999999999999999999999877 578899999999999999999999998887644
No 339
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=98.37 E-value=1.5e-06 Score=75.48 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHH-----HHHHHcCCCHH-------HHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDAT-----KFFALSNLSRQ-------DLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~-----~~~~~s~L~~~-------~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
.+|+++.+.+.++|..+|.|++|+|+.++.. .++...|.+.. .+..+|..+|.+++|.++.+||+.+|
T Consensus 13 ~~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~ 92 (195)
T 1qv0_A 13 FDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGW 92 (195)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCCCceEcHHHHHHHH
Confidence 3599999999999999999999999999999 68888888754 58999999999999999999999888
Q ss_pred HHHHH
Q 016165 78 QLISL 82 (394)
Q Consensus 78 ~Li~~ 82 (394)
.....
T Consensus 93 ~~~~~ 97 (195)
T 1qv0_A 93 KQLAT 97 (195)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76543
No 340
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.36 E-value=2.7e-07 Score=97.47 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=30.7
Q ss_pred cccccCCCCcccEEEEeecCCCchhHHHHHHHhcc
Q 016165 187 PLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 187 ~~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
.++++++++ +.+++|+||||||||||+++++|..
T Consensus 567 ~vl~disl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 567 FVPNDLEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCEEEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEeeeccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 467788888 7799999999999999999999976
No 341
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.36 E-value=1.9e-07 Score=89.58 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=50.8
Q ss_pred CCCCCc-hhhhhhhcccChHHHHHHHhhcCCEEEE-----EeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCHH
Q 016165 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (394)
Q Consensus 293 t~g~ls-Ge~qrv~~~~~~~~iaral~~~~dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~~ 366 (394)
.++.+| ||+|++.-+. -..+|++++.+|+++|+ .+|+.. ...+.++++.+...+.++++++ |+.+
T Consensus 245 ~~~~lS~G~~~~~~la~-~l~~a~~l~~~p~~lllDEp~~~LD~~~---~~~l~~~l~~~~~~~~~vi~~s-----H~~~ 315 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAF-RLAMSLYLAGEISLLILDEPTPYLDEER---RRKLITIMERYLKKIPQVILVS-----HDEE 315 (339)
T ss_dssp CGGGSCHHHHHHHHHHH-HHHHHHHTTTTTCEEEEECCCTTCCHHH---HHHHHHHHHHTGGGSSEEEEEE-----SCGG
T ss_pred ChHHCCHHHHHHHHHHH-HHHHHHHhcCCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhcCCEEEEEE-----ChHH
Confidence 577889 9999653100 01167777889999999 677655 6777888888877677788887 5543
Q ss_pred HHHHHHhHhhhc
Q 016165 367 QLMRVYGALMWS 378 (394)
Q Consensus 367 ~~~~~~~~~~~~ 378 (394)
....+++++.+.
T Consensus 316 ~~~~~d~~~~l~ 327 (339)
T 3qkt_A 316 LKDAADHVIRIS 327 (339)
T ss_dssp GGGGCSEEEEEE
T ss_pred HHHhCCEEEEEE
Confidence 222225655553
No 342
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=98.35 E-value=2e-06 Score=66.34 Aligned_cols=72 Identities=10% Similarity=0.270 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhhC-CCCC-CccchHHHHHHHHH-cC------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Q 016165 14 DHQKIYLEWFNYAD-SDGD-GRITGNDATKFFAL-SN------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (394)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~-g~i~g~~~~~~~~~-s~------L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~ 84 (394)
.....+.+.|+.+| .|++ |+|+.++.+.++.+ -| ++...+.++..-+|.|+||.++.+||+..|.-+..+.
T Consensus 7 ~~~~~l~~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~~ 86 (93)
T 4eto_A 7 KALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMC 86 (93)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 34578999999997 6775 89999999999986 32 5789999999999999999999999999887776654
Q ss_pred c
Q 016165 85 D 85 (394)
Q Consensus 85 ~ 85 (394)
+
T Consensus 87 ~ 87 (93)
T 4eto_A 87 N 87 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 343
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A
Probab=98.34 E-value=1.3e-06 Score=67.57 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=62.0
Q ss_pred CCHHH--HHHHHHHHhhhC-CCCCC-ccchHHHHHHHHH-------cCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 11 CSKDH--QKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 11 ls~~e--~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
+++.+ ...+..+|..+| .+++| +|+.++.+.++.+ ..++...+.+++..+|.|++|.++.+||+..|.-
T Consensus 5 ~~~~~~~~~~l~~~F~~~Dd~d~~G~~I~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I~~~EF~~~~~~ 84 (99)
T 1qls_A 5 PTETERCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGG 84 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCcCeeCHHHHHHHHHHHcchhccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34444 458999999998 99999 9999999999984 4588999999999999999999999999988865
Q ss_pred HHH
Q 016165 80 ISL 82 (394)
Q Consensus 80 i~~ 82 (394)
+..
T Consensus 85 ~~~ 87 (99)
T 1qls_A 85 LAI 87 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 344
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=98.34 E-value=2.3e-06 Score=67.47 Aligned_cols=72 Identities=10% Similarity=0.279 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhC-CCCC-CccchHHHHHHHHH-cC------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Q 016165 14 DHQKIYLEWFNYAD-SDGD-GRITGNDATKFFAL-SN------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (394)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~-g~i~g~~~~~~~~~-s~------L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~ 84 (394)
+....+.+.|..+| .|++ |+|+.++.+.++.. -| ++...+.++..-+|.|+||.++++||+..|.-+..+.
T Consensus 10 ~~~~~l~~aF~~fD~~dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~~~~~ 89 (104)
T 3zwh_A 10 KALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSIAMMS 89 (104)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 34578999999997 6775 89999999999986 32 5799999999999999999999999999987777666
Q ss_pred c
Q 016165 85 D 85 (394)
Q Consensus 85 ~ 85 (394)
+
T Consensus 90 ~ 90 (104)
T 3zwh_A 90 N 90 (104)
T ss_dssp H
T ss_pred H
Confidence 5
No 345
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=98.33 E-value=1.4e-06 Score=72.45 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
.+|+++...+.++|..+|.+++|+|+.++...++...| ++...+..++..+|.+++|.++.+||..+|.-
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 74 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMAR 74 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHh
Confidence 58999999999999999999999999999999999877 67888999999999999999999999877753
No 346
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=98.33 E-value=1.3e-06 Score=73.73 Aligned_cols=69 Identities=29% Similarity=0.378 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
.+|+++...+.++|..+|.+++|+|+.++...++...| ++.+.+..+|..+|.+++|.++.+||+.++.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (166)
T 2aao_A 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATL 90 (166)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHHHHHCTTCCSSBCHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 37899999999999999999999999999999998876 6788999999999999999999999987764
No 347
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=98.33 E-value=2.7e-06 Score=65.30 Aligned_cols=71 Identities=13% Similarity=0.267 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhCCCCCC---ccchHHHHHHHHH-----cC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 016165 14 DHQKIYLEWFNYADSDGDG---RITGNDATKFFAL-----SN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (394)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g---~i~g~~~~~~~~~-----s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~ 83 (394)
.+...+.+.|..+| +++| +|+.++.+.++.. -| ++...+.++...+|.|++|.++.+||+..|.-+..+
T Consensus 6 ~~~~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l~~~ 84 (92)
T 3rm1_A 6 KAVVALIDVFHQYS-GREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMITTA 84 (92)
T ss_dssp HHHHHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cCCCCcCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Confidence 45568899999999 7777 9999999999998 44 789999999999999999999999999998777666
Q ss_pred hc
Q 016165 84 QD 85 (394)
Q Consensus 84 ~~ 85 (394)
.+
T Consensus 85 ~~ 86 (92)
T 3rm1_A 85 CH 86 (92)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 348
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=98.32 E-value=1e-06 Score=73.93 Aligned_cols=72 Identities=18% Similarity=0.325 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~ 81 (394)
.+|+++...+.++|..+|.|++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||+.++....
T Consensus 13 ~ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 86 (162)
T 1top_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM 86 (162)
T ss_dssp HSCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999887 6789999999999999999999999998876553
No 349
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=98.31 E-value=1.3e-06 Score=66.24 Aligned_cols=71 Identities=10% Similarity=0.295 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhC-CCCCC-ccchHHHHHHHHH---cC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Q 016165 14 DHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL---SN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (394)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~---s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~ 84 (394)
+....+..+|..+| ++++| +|+.++.+.++.+ .| ++...+.+++..+|.+++|.++.+||+..+.-+..+.
T Consensus 7 ~~~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~~~~ 84 (90)
T 1k8u_A 7 QAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIY 84 (90)
T ss_dssp HHHHHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 33468999999999 59999 9999999999997 56 7889999999999999999999999998887655443
No 350
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=98.29 E-value=4.3e-06 Score=72.44 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
....+.....+|..+|.|++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||..+|+-.
T Consensus 104 ~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~ 172 (191)
T 2ccm_A 104 PEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWTEY 172 (191)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSBCCHHHHHHHHHTTTCCHHHHHHHHHHHTTTTTSCCBHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 445567789999999999999999999999999999999999999999999999999999999888754
No 351
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=98.29 E-value=9.2e-07 Score=68.01 Aligned_cols=73 Identities=5% Similarity=0.231 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-ccchHHHHHHHHH---cC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhc
Q 016165 13 KDHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL---SN-LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD 85 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~---s~-L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~ 85 (394)
+++...+.+.|..+| +|++| +|+.++.+.++.. -| ++...+.++...+|.|++|.++.+||+..|.-+..+.+
T Consensus 6 ~~~~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~~~~~~~~~~i~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~ 84 (92)
T 2kax_A 6 EKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLCMAYN 84 (92)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSSEEEHHHHHHHHHHHSCCTTTCCTTHHHHHHHHTTTCSSEEEHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeeCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 456678999999999 99999 9999999999986 23 77889999999999999999999999988876554443
No 352
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=98.28 E-value=1.1e-06 Score=69.20 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc---C--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS---N--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+++.+...+..+|..+|+|++|+|+.++.+.++... | ++.+.+..++..+|.+++|.++.+||+..|+
T Consensus 36 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 108 (110)
T 1pva_A 36 LKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVH 108 (110)
T ss_dssp CTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 345567788999999999999999999999999986 3 8999999999999999999999999987664
No 353
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=98.28 E-value=1.1e-06 Score=67.59 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhCC-CCCC-ccchHHHHHHH-HHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 016165 14 DHQKIYLEWFNYADS-DGDG-RITGNDATKFF-ALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (394)
Q Consensus 14 ~e~~~y~~~F~~~d~-~~~g-~i~g~~~~~~~-~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~ 83 (394)
++...+..+|..+|. |++| +|+.++.+.++ ...| ++...+..++..+|.|++|.++.+||+..|.-+..+
T Consensus 7 ~~~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~ 81 (93)
T 1xk4_A 7 KALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVA 81 (93)
T ss_dssp HHHHHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCcCeECHHHHHHHHHHHCcccCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 445689999999999 9999 99999999999 6666 555678999999999999999999999888655444
No 354
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=98.27 E-value=1e-06 Score=69.38 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc-----CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-----NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-----~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
......+..+|..+|+|++|+|+.++.+.++... .++.+.+..+|..+|.+++|.++.+||+..|+
T Consensus 37 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (109)
T 5pal_A 37 GKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVA 107 (109)
T ss_dssp TCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3456678999999999999999999999999875 48999999999999999999999999988765
No 355
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=98.27 E-value=4.5e-07 Score=71.41 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC-----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN-----LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~-----L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
+.+...+..+|..+|.|++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|
T Consensus 37 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 106 (108)
T 1rro_A 37 KMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMV 106 (108)
T ss_dssp GSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 44567789999999999999999999999999873 899999999999999999999999998765
No 356
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=98.27 E-value=1.8e-06 Score=84.06 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=65.4
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
...+|++|.+.++++|..+|.|++|+|+.+|.+.+|..-| ++.+.+.+|+..+|.|++|.++.+||+.+|
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~~~D~DgDG~IdFeEFl~lm 364 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMM 364 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCSSSEEHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 3569999999999999999999999999999999999877 678999999999999999999999998765
No 357
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=98.27 E-value=1.9e-06 Score=67.49 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+....+..+|..+|++++|+|+.++.+.++...| ++...+..+|..+|.+++|.++.+||+.+|.
T Consensus 21 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~~ 87 (105)
T 1wlz_A 21 SHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFS 87 (105)
T ss_dssp HTHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHHC
T ss_pred chHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHHh
Confidence 3456788899999999999999999999999876 7899999999999999999999999987665
No 358
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=98.27 E-value=3.2e-06 Score=71.02 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+++...+..+|..+|.|++|+|+.++.+.++...| ++.+.+.+++..+|.+++|.++.+||+.+|.
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~D~d~dg~I~~~eF~~~~~ 113 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMML 113 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 57788999999999999999999999999999987 7899999999999999999999999998775
No 359
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.27 E-value=4.8e-07 Score=79.04 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
.||+++.+.+.++|..+|.|++|+|+.++...++...| ++.+.+..+|..+|.+++|.++.+||+.+|
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~ 72 (188)
T 1s6i_A 3 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAAT 72 (188)
T ss_dssp SSSCTTTCSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTCCCCHHHHHHHHHHTCTTCSSEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCeEeHHHHHHHH
Confidence 57899999999999999999999999999999999877 778999999999999999999999998776
No 360
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.26 E-value=1.4e-07 Score=85.80 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=21.9
Q ss_pred CcccEEEEeecCCCchhHHHHHHHh
Q 016165 195 DAKPMVMLLGQYSTGKTTFIKHLLR 219 (394)
Q Consensus 195 ~~~~~vaIvG~~gaGKSTLln~L~g 219 (394)
..+.+++|+||||||||||+++|++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3444999999999999999999993
No 361
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=98.26 E-value=2.3e-06 Score=72.86 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCccchHHHHH----HHHHcCC--CHHHHH-----------HHHHHHhcCCCCCCCHHHH
Q 016165 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATK----FFALSNL--SRQDLK-----------QVWAIADAKRQGYLGYREF 73 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~----~~~~s~L--~~~~L~-----------~Iw~l~d~~~~g~l~~~ef 73 (394)
+|+++.+.+.++|..+|.|++|+|+.++... ++...|+ +.+.+. .++..+|.+++|.++.+||
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef 80 (176)
T 1nya_A 1 TTAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQF 80 (176)
T ss_dssp CCSHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHH
Confidence 6899999999999999999999999999998 6777674 455555 8899999999999999999
Q ss_pred HHHHHHH
Q 016165 74 IAAMQLI 80 (394)
Q Consensus 74 ~~a~~Li 80 (394)
..++.-.
T Consensus 81 ~~~~~~~ 87 (176)
T 1nya_A 81 IRVTENL 87 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 362
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=98.26 E-value=1.2e-06 Score=73.21 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
.||++|.+.+.++|..+|.|++|+|+.++.+.++...| ++...+..+|...|.+++|.++..||..+|.
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMA 73 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHHHHHHHHHHHHTTSTTEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHHHHHHHHHhcccCCCCcccHHHHHHHHH
Confidence 48999999999999999999999999999999999877 6788999999999999999999999987664
No 363
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=98.25 E-value=7.1e-07 Score=65.29 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=58.0
Q ss_pred HHHHHHHHhhh-CCCCC-CccchHHHHHHHHHcC--C--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 16 QKIYLEWFNYA-DSDGD-GRITGNDATKFFALSN--L--SRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 16 ~~~y~~~F~~~-d~~~~-g~i~g~~~~~~~~~s~--L--~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
...+..+|..+ |++++ |+|+.++...++...| + +.+.+.++|..+|.+++|.++.+||+..|.-
T Consensus 4 ~~~l~~~F~~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~ 73 (76)
T 1qx2_A 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKK 73 (76)
T ss_dssp HHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 45788999999 99999 9999999999999877 6 7789999999999999999999999887653
No 364
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=98.25 E-value=2.5e-06 Score=70.30 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC---CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN---LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~---L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
....+..+|..+|+|++|+|+.++.+.++...| ++.+.+.+++..+|.|++|.++.+||+.+|.-.
T Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 106 (135)
T 3h4s_E 38 FVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRL 106 (135)
T ss_dssp HHHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSSBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHh
Confidence 456789999999999999999999999999877 699999999999999999999999999888644
No 365
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=98.25 E-value=3.4e-06 Score=69.61 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHH---hcCCCCCCCHHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIA---DAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~---d~~~~g~l~~~ef~~a~~Li 80 (394)
.+|+++.+.+.++|..+|.+++|+|+.++...++...| ++...+..++..+ |.++ |.++.+||..++...
T Consensus 1 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~-g~i~~~eF~~~~~~~ 75 (149)
T 2mys_C 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA-AAITFEEFLPMLQAA 75 (149)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccC-CcCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999999877 5788999999999 9999 999999998877654
No 366
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=98.25 E-value=2e-06 Score=71.25 Aligned_cols=68 Identities=18% Similarity=0.362 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
|+++.+.+.++|..+|.|++|+|+.++...++...| ++...+.++...+|.+++|.++.+||..+|..
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 70 (143)
T 2obh_A 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQ 70 (143)
T ss_dssp CHHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHH
Confidence 678999999999999999999999999999999988 57889999999999999999999999887654
No 367
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=98.24 E-value=2.9e-06 Score=71.10 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+++...+..+|..+|.|++|+|+.++.+.++...| ++.+.+.+++..+|.+++|.++.+||+.+|.
T Consensus 44 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~~~~ 111 (147)
T 1wy9_A 44 PSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMML 111 (147)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCTTEECHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 68888999999999999999999999999999987 7899999999999999999999999988774
No 368
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=98.23 E-value=4e-06 Score=71.26 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~ 81 (394)
.......+|..+|+|++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||+.+|.-..
T Consensus 92 ~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~ 158 (174)
T 1q80_A 92 VEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFF 158 (174)
T ss_dssp HHTHHHHHHHHHCTTSSSSBCHHHHHHHHHHHTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHHHHh
Confidence 3467889999999999999999999999999999999999999999999999999999999886554
No 369
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=98.23 E-value=1.1e-06 Score=69.21 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc-----CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-----NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-----~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+.....+..+|..+|.|++|+|+.++.+.++... .++.+.+.+++..+|.+++|.++.+||+..|+
T Consensus 38 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~EF~~~~~ 108 (109)
T 3fs7_A 38 SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK 108 (109)
T ss_dssp TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 3456678899999999999999999999999877 38999999999999999999999999987663
No 370
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=98.23 E-value=2.8e-06 Score=73.41 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHH-----HHHHHcCCCHH-------HHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDAT-----KFFALSNLSRQ-------DLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~-----~~~~~s~L~~~-------~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
-+|++++..+.++|..+|.|++|+|+.++.. .++...|.+.+ .+..+|..+|.+++|.++.+||..+|
T Consensus 9 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~ 88 (191)
T 1uhk_A 9 FDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGW 88 (191)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCCTTCEEEHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhccCCCCCcCcHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhCcCCCCcCcHHHHHHHH
Confidence 4689999999999999999999999999999 78888887654 58899999999999999999998887
Q ss_pred HHH
Q 016165 78 QLI 80 (394)
Q Consensus 78 ~Li 80 (394)
...
T Consensus 89 ~~~ 91 (191)
T 1uhk_A 89 KKL 91 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 371
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=98.23 E-value=1.5e-06 Score=68.31 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc---C--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS---N--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+.....+..+|..+|+|++|+|+.++.+.++... | ++.+.+..++..+|.+++|.++.+||+..|.
T Consensus 37 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (109)
T 1rwy_A 37 KKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107 (109)
T ss_dssp GSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 4456788999999999999999999999999986 3 8999999999999999999999999987764
No 372
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=98.22 E-value=4.8e-06 Score=66.58 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhCC-CCCC-ccchHHHHHHHH-HcC-------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADS-DGDG-RITGNDATKFFA-LSN-------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISL 82 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~-~~~g-~i~g~~~~~~~~-~s~-------L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~ 82 (394)
+++...+.++|..+|. |++| +|+.++.+.++. .-| ++...+.++...+|.|++|.++.+||+..|.-+..
T Consensus 8 ~~~~~~l~~~F~~fD~~dgdG~~Is~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~ 87 (113)
T 1xk4_C 8 ERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLTW 87 (113)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHHHH
Confidence 4557789999999994 9999 999999999998 444 57889999999999999999999999988865543
No 373
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=98.22 E-value=1.3e-06 Score=68.61 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc---C--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS---N--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+.....+..+|..+|+|++|+|+.++...++... | ++.+.+..++..+|.+++|.++.+||+..|+
T Consensus 37 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (108)
T 2pvb_A 37 SKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK 107 (108)
T ss_dssp GSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 3456788999999999999999999999999977 4 8999999999999999999999999987653
No 374
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.21 E-value=3.8e-06 Score=76.94 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=41.4
Q ss_pred cceeecCCCCCchh-hhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHH----HHHhcCCCeEEEEEecCC
Q 016165 287 HITLVDTPGVLSGE-KQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVI----TSLRGHDDKIRVVLNKAD 361 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe-~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l----~~l~~~~~~viiv~nK~D 361 (394)
.+.++||||..+.. ...+. ..+..+ +.+ +++++++|+............. ......+.|+++|.||+|
T Consensus 110 d~iiiDtpG~~~~~~~~~l~-----~~~~~~-~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D 182 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFHEFG-----VRLMEN-LPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD 182 (262)
T ss_dssp SEEEEECCSSHHHHHHSHHH-----HHHHHT-SSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred CEEEEeCCCccchhhhhhhH-----HHHHHH-Hhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccc
Confidence 67899999986511 11111 002222 255 8888899985421122222221 112223678999999999
Q ss_pred ccCHHH
Q 016165 362 QVDTQQ 367 (394)
Q Consensus 362 l~~~~~ 367 (394)
+....+
T Consensus 183 ~~~~~~ 188 (262)
T 1yrb_A 183 LLSEEE 188 (262)
T ss_dssp GCCHHH
T ss_pred cccccc
Confidence 876543
No 375
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=98.21 E-value=1.9e-06 Score=75.32 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLS-RQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~-~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
.+|+++...+.++|..+|.|++|+|+.++...++...|++ ...+..++..+|.+++|.++.+||+.++
T Consensus 45 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~ 113 (191)
T 3k21_A 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEFIAAA 113 (191)
T ss_dssp HCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCTTHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCCcHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 3789999999999999999999999999999999998842 2788999999999999999999998775
No 376
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.21 E-value=9.2e-07 Score=82.65 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=24.0
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCccccee
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRF 236 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r~ 236 (394)
..++++|.||+|||||+|.|.|... ..++..|++|+.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~--~~~~~~~g~T~~ 157 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI--AKTGDRPGITTS 157 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC--C-----------
T ss_pred ceEEEEecCCCchHHHHHHHhcCce--eecCCCCCeeee
Confidence 3799999999999999999999886 777878877763
No 377
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1
Probab=98.20 E-value=4.8e-07 Score=66.58 Aligned_cols=66 Identities=14% Similarity=0.272 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhhCC-CCCC-ccchHHHHHHHHH-cC--C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 14 DHQKIYLEWFNYADS-DGDG-RITGNDATKFFAL-SN--L-SRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 14 ~e~~~y~~~F~~~d~-~~~g-~i~g~~~~~~~~~-s~--L-~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
++...+..+|..+|. |++| +|+.++...++.+ .| + +...+..++..+|.+++|.++.+||+..|.-
T Consensus 4 ~~~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 75 (78)
T 1cb1_A 4 KSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKK 75 (78)
T ss_dssp CCHHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 356789999999999 9999 9999999999986 56 6 7888999999999999999999999887753
No 378
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.3e-06 Score=75.60 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
-.||++|.+.|.+.|..+|.|++|+|+.++...++..-| ++...+.+++..+|.+++|.++..||..++
T Consensus 3 ~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~~~~i~~~ef~~~~ 73 (176)
T 2lhi_A 3 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALM 73 (176)
T ss_dssp CCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTTCSSCSSSBCTTHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHhCcCCCccchHHHHHHHH
Confidence 368999999999999999999999999999999999877 678899999999999999999999997655
No 379
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.20 E-value=3.3e-07 Score=92.24 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=41.1
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeE-EEEEecCCccC
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKI-RVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~v-iiv~nK~Dl~~ 364 (394)
.+.|+||||.+.....-.. . ...+++ +..||.+++++|+.. + .......+.+.+. .++ .+|+||+|...
T Consensus 185 DvvIIDTpG~~~~~~~l~~-e--l~~~~~--~i~pd~vllVvDa~~-g--~~~~~~a~~~~~~-~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 185 EIIIVDTSGRHKQEDSLFE-E--MLQVAN--AIQPDNIVYVMDASI-G--QACEAQAKAFKDK-VDVASVIVTKLDGHA 254 (504)
T ss_dssp CEEEEEECCCCTTCHHHHH-H--HHHHHH--HHCCSEEEEEEETTC-C--TTHHHHHHHHHHH-HCCCCEEEECTTSCC
T ss_pred cEEEEeCCCCcccchhHHH-H--HHHHHh--hhcCceEEEEEeccc-c--ccHHHHHHHHHhh-cCceEEEEeCCcccc
Confidence 5789999999862111111 0 001222 238999999999976 2 2234444444432 454 88999999764
No 380
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=98.20 E-value=1.5e-06 Score=68.36 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc---C--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS---N--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
+.+...+..+|..+|.|++|+|+.++.+.++... | ++.+.+..++..+|.+++|.++.+||+.+|
T Consensus 38 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 107 (109)
T 1bu3_A 38 AKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALV 107 (109)
T ss_dssp GSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred hhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 3456788999999999999999999999999987 3 899999999999999999999999998765
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.20 E-value=1.3e-06 Score=78.10 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.7
Q ss_pred ccEEEEeecCCCchhHHHHHHHhcc
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+..++|+|+||||||||++.|++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999999876
No 382
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Probab=98.20 E-value=1.3e-06 Score=67.63 Aligned_cols=74 Identities=11% Similarity=0.232 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHhhhC-CCCCC-ccchHHHHHHHHH-------cCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 016165 12 SKDHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISL 82 (394)
Q Consensus 12 s~~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~ 82 (394)
.+++...+.++|..+| .|++| +|+.++.+.++.. ..++...+.++..-+|.|++|.++.+||+..|.-...
T Consensus 7 ~e~~~~~l~~~F~~fD~~dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~~~~ 86 (95)
T 2wcb_A 7 LEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHH
Confidence 3455778999999999 89998 9999999999975 2478899999999999999999999999988876554
Q ss_pred Hhc
Q 016165 83 VQD 85 (394)
Q Consensus 83 ~~~ 85 (394)
+.+
T Consensus 87 ~~~ 89 (95)
T 2wcb_A 87 AAH 89 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 383
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=98.19 E-value=4.2e-06 Score=65.29 Aligned_cols=70 Identities=10% Similarity=0.276 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-ccchHHHHHHHHH-----c--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-----S--NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISL 82 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-----s--~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~ 82 (394)
+++...+.++|..+| .|++| +|+.++.+.++.. - .++...+.++..-+|.|++|.++.+||+.+|.-...
T Consensus 6 ~~~~~~l~~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~ 84 (99)
T 2y5i_A 6 EGAMDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (99)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 355678999999997 88998 9999999999986 2 368899999999999999999999999988765443
No 384
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=98.19 E-value=2.2e-06 Score=76.78 Aligned_cols=71 Identities=23% Similarity=0.304 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.+|++|...+.++|..+|.|++|+|+.++...++...| ++.+.+..++..+|.+++|.++.+||..++.-+
T Consensus 44 ~l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~~ 116 (220)
T 3sjs_A 44 TIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM 116 (220)
T ss_dssp GCCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBGGGBCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999988876 889999999999999999999999999888754
No 385
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=98.18 E-value=1.2e-06 Score=77.03 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
.+|++|...+.++|..+|+|++|+|+-++.+.++.+.| ++.+.+..++..+|.+++|.++.+||+.++
T Consensus 50 ~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~~ 119 (197)
T 3pm8_A 50 HLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAAT 119 (197)
T ss_dssp HCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHHHHHHC-------CEEHHHHHHTT
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 37899999999999999999999999999999999877 577899999999999999999999998765
No 386
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=98.18 E-value=5.1e-06 Score=69.80 Aligned_cols=63 Identities=24% Similarity=0.338 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
......+|..+|+|++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||+.+|.
T Consensus 97 ~~~~~~~F~~~D~d~~G~i~~~E~~~~l~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 159 (166)
T 3akb_A 97 RPFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVGETEIVPAFA 159 (166)
T ss_dssp HHHHHHHHHHHCSSSSSCCBHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345889999999999999999999999999999999999999999999999999999988775
No 387
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.17 E-value=2.5e-06 Score=82.56 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=29.5
Q ss_pred cccCCCCccc--EEEEeecCCCchhHHHHHHHhcc
Q 016165 189 LTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 189 l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
++++++.+.+ .++|+|+||||||||+|+|+|..
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3777777666 99999999999999999999988
No 388
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.17 E-value=2.5e-06 Score=79.35 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.0
Q ss_pred CCcccEEEEeecCCCchhHHHHHHHhcc
Q 016165 194 FDAKPMVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 194 ~~~~~~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+..+.+++|+|+||+|||||++.+++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445599999999999999999999855
No 389
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.17 E-value=9.5e-07 Score=79.12 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=23.7
Q ss_pred cccEEEEeecCCCchhHHHHHHHhccC
Q 016165 196 AKPMVMLLGQYSTGKTTFIKHLLRTSY 222 (394)
Q Consensus 196 ~~~~vaIvG~~gaGKSTLln~L~g~~~ 222 (394)
.+.+++|+||||||||||+++|+|...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344999999999999999999999663
No 390
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A
Probab=98.16 E-value=4.1e-06 Score=64.75 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhhC-CCC-CCccchHHHHHHHHH-----cC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYAD-SDG-DGRITGNDATKFFAL-----SN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISL 82 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d-~~~-~g~i~g~~~~~~~~~-----s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~ 82 (394)
+++...+.++|..+| .|+ +|+|+.++.+.++.. -| ++...+.++...+|.|++|.++.+||+..|.-+..
T Consensus 5 ~~~~~~l~~~F~~fD~~dgd~G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~ 83 (95)
T 1j55_A 5 ETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAITS 83 (95)
T ss_dssp HHHHHHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHH
Confidence 356678999999999 788 589999999999986 23 56778999999999999999999999988765543
No 391
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.16 E-value=4.7e-06 Score=80.90 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=28.5
Q ss_pred ccccCCCCcccEEEEeecCCCchhHHHHHHHhcc
Q 016165 188 LLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 188 ~l~~~~~~~~~~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+++++++..+..++|+||||||||||+++|+|..
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5566555445599999999999999999999987
No 392
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=98.15 E-value=7.8e-06 Score=67.58 Aligned_cols=62 Identities=23% Similarity=0.347 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
.....+.|..+|+|++|+|+.++.+.++...| ++.+.+.+++.-+|.|++|.++.+||+..|
T Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~eF~~~~ 141 (143)
T 2obh_A 78 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141 (143)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 35678899999999999999999999998876 889999999999999999999999998765
No 393
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=98.15 E-value=7.6e-06 Score=69.20 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
......+|..+|+|++|+|+.++.+.++...| ++.+.+.+++..+|.|++|.++.+||+.+|+
T Consensus 100 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 164 (169)
T 3qrx_A 100 REEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164 (169)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 55678899999999999999999999999887 8999999999999999999999999988764
No 394
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=98.14 E-value=8.7e-06 Score=67.52 Aligned_cols=62 Identities=24% Similarity=0.433 Sum_probs=56.7
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
......|..+|+|++|+|+.++.+.++...| ++.+.+.+++.-+|.|++|.++.+||+.+|.
T Consensus 83 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1exr_A 83 EELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV 146 (148)
T ss_dssp HHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence 4566799999999999999999999999887 8899999999999999999999999987763
No 395
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.14 E-value=2.7e-06 Score=69.97 Aligned_cols=66 Identities=17% Similarity=0.384 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+.....+..+|..+|+|++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|.
T Consensus 72 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 139 (145)
T 2bl0_B 72 TEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLV 139 (145)
T ss_dssp GGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHHH
Confidence 44567889999999999999999999999999988 8999999999999999999999999987765
No 396
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=98.13 E-value=3.5e-06 Score=70.26 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=55.8
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
....+.|..+|.|++|+|+.++.+.++..-| ++...+.+++..+|.|++|.++.+||+..|
T Consensus 83 ~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~m 145 (148)
T 2lmt_A 83 EEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMI 145 (148)
T ss_dssp HHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSCCSSEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 3577899999999999999999999998876 889999999999999999999999997654
No 397
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=98.13 E-value=1.8e-06 Score=71.90 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
|++|...+.++|..+|.|++|+|+.++. ..+...+..+ .+.++|..+|.+++|.++.+||..++.
T Consensus 1 s~~~~~~l~~~F~~~D~d~~G~i~~~el-~~l~~~~~~~-~~~~~~~~~D~~~~g~i~~~ef~~~~~ 65 (155)
T 3ll8_B 1 DADEIKRLGKRFKKLDLDNSGSLSVEEF-MSLPELQQNP-LVQRVIDIFDTDGNGEVDFKEFIEGVS 65 (155)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSSBCHHHH-TTSGGGTTCT-THHHHHHHHCTTCSSSBCHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEcHHHH-HHhhccccch-HHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 6789999999999999999999999999 5666666554 889999999999999999999988774
No 398
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=98.13 E-value=5.7e-06 Score=71.68 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHhhh-CCCCCCccchHHHHHHHHHc----C--CCHHHHHHHH-----------HHHhcCCCCCCCH
Q 016165 9 GSCSKDHQKIYLEWFNYA-DSDGDGRITGNDATKFFALS----N--LSRQDLKQVW-----------AIADAKRQGYLGY 70 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~-d~~~~g~i~g~~~~~~~~~s----~--L~~~~L~~Iw-----------~l~d~~~~g~l~~ 70 (394)
-.+|++++..+.++|..+ |.|++|+|+.++...++.+. | ++.+.+..++ ..+|.|++|.++.
T Consensus 4 ~~ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~ 83 (191)
T 2ccm_A 4 HQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTK 83 (191)
T ss_dssp CCCCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEH
T ss_pred hhccHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECH
Confidence 458999999999999999 99999999999999999887 6 5566777777 8999999999999
Q ss_pred HHHHHHHHHH
Q 016165 71 REFIAAMQLI 80 (394)
Q Consensus 71 ~ef~~a~~Li 80 (394)
+||..+|+-.
T Consensus 84 ~Ef~~~~~~~ 93 (191)
T 2ccm_A 84 EEWLKMWAEC 93 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888664
No 399
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.13 E-value=5.6e-08 Score=84.94 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.9
Q ss_pred EEEEeecCCCchhHHHHHHHhcc
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+++|+|+||||||||++.|++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 68999999999999999998743
No 400
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=98.13 E-value=8.5e-06 Score=68.23 Aligned_cols=64 Identities=17% Similarity=0.384 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
....+..+|..+|.+++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|.
T Consensus 94 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 159 (162)
T 1top_A 94 SEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMME 159 (162)
T ss_dssp HHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 456688999999999999999999999999988 8999999999999999999999999988774
No 401
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=98.13 E-value=1.1e-05 Score=63.11 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhCCCC---CCccchHHHHHHHHHcC---CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 016165 14 DHQKIYLEWFNYADSDG---DGRITGNDATKFFALSN---LS----RQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (394)
Q Consensus 14 ~e~~~y~~~F~~~d~~~---~g~i~g~~~~~~~~~s~---L~----~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~ 83 (394)
.....+.+.|..+|.++ +|+|+.++.+.++.+.+ ++ ...+.++..-+|.|+||.++++||+..|.-+..+
T Consensus 8 ~~i~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~~~~ 87 (100)
T 3nxa_A 8 KAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGITGP 87 (100)
T ss_dssp HHHHHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 45568999999999863 79999999999998732 43 6789999999999999999999999888655443
No 402
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=98.12 E-value=5.5e-06 Score=67.08 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhhCCCCCCccchHHHHHHHHH-------cCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhc
Q 016165 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD 85 (394)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~ 85 (394)
+.......+|+.+|.| +|+|+.+|.+.++.+ ..++.+.+.+|..-+|.|+||.++++||+..|.-+..+.+
T Consensus 12 ~~ie~l~~~F~~yd~d-dG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d~DG~IdF~EF~~lm~~l~~~~h 89 (121)
T 4drw_A 12 HAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTIACN 89 (121)
T ss_dssp HHHHHHHHTTGGGSCT-TCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 3457899999999998 899999999999854 5578999999999999999999999999998877666544
No 403
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=98.12 E-value=5.3e-06 Score=68.37 Aligned_cols=65 Identities=14% Similarity=0.390 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+.....+..+|..+|++++|+|+.++.+.++...| ++.+.+..++.. |.+++|.++.+||+-+|.
T Consensus 81 ~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-d~~~dg~i~~~eF~~~~~ 147 (149)
T 2mys_C 81 QGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QEDSNGCINYEAFVKHIM 147 (149)
T ss_pred cchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh-CCCCCCcEeHHHHHHHHh
Confidence 34566788999999999999999999999999988 899999999999 999999999999988764
No 404
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.11 E-value=1.2e-05 Score=76.34 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=27.3
Q ss_pred ccCCCCccc--EEEEeecCCCchhHHHHHHHhcc
Q 016165 190 TNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 190 ~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
++++|...+ +++++|+||+||||++..|++..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456665544 89999999999999999999987
No 405
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=98.10 E-value=9.1e-07 Score=73.54 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAK--RQGYLGYREFIAAMQLI 80 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~--~~g~l~~~ef~~a~~Li 80 (394)
.+|+++.+.+.++|..+|.+++|+|+.++...++...| ++...+..++..+|.+ ++|.++.+||+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~g~i~~~eF~~~~~~~ 77 (151)
T 1w7j_B 3 EFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAV 77 (151)
T ss_dssp --------CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCcCCCCcCcHHHHHHHHHHH
Confidence 58999999999999999999999999999999999876 6788999999999999 99999999998877654
No 406
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=98.10 E-value=2e-06 Score=75.50 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
.+|+++...+.++|..+|.|++|+|+.++...+ ..-|++.. +..+|..+|.+++|.++.+||+.+|..
T Consensus 22 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~lg~~~~-~~~l~~~~D~d~dg~i~~~EF~~~~~~ 89 (202)
T 2bec_A 22 GFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPL-GDRIIESFFPDGSQRVDFPGFVRVLAH 89 (202)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HHHHHSTT-HHHHHHTTSCSSCCCCCHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-HhcCCCcc-HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999999999999999999888 76676655 999999999999999999999887643
No 407
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=98.09 E-value=4e-06 Score=71.87 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~ 81 (394)
.+.....+|..+|.|++|+|+.++.+.++...|++.+.+.+++..+|.|++|.++.+||..+|.-..
T Consensus 103 ~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~~ 169 (185)
T 2sas_A 103 CQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRLL 169 (185)
T ss_dssp HHHHHHHHHHHHCTTSSSCCCHHHHHHHTTSSCCCCSSHHHHHHHHHTTTTSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHh
Confidence 4467899999999999999999999999999999999999999999999999999999998886543
No 408
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.08 E-value=1.4e-06 Score=79.58 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=23.4
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHHhcc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
..++++++|++.. +|+|+|+||||||||+++|+|..
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999877 89999999999999999999965
No 409
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=98.08 E-value=7.4e-06 Score=72.17 Aligned_cols=63 Identities=16% Similarity=0.363 Sum_probs=59.0
Q ss_pred HHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 18 IYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 18 ~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
....+|..+|.|++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||+.+|.-.
T Consensus 129 ~~~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 191 (208)
T 2hpk_A 129 LSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTELVHLFRKF 191 (208)
T ss_dssp HHHHHHHHHCTTCSSSBCHHHHHHHHHHTTSCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCCHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999999999999999999998887643
No 410
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.08 E-value=2.1e-05 Score=77.64 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=44.5
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHH-HHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccCH
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTS-WFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iar-al~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~~ 365 (394)
.+.|+||||.+........ .+.. .-+.+|+.+++++|+.. ........+.+.+......+|+||+|....
T Consensus 184 DvVIIDTaGrl~~d~~lm~------el~~i~~~~~pd~vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 184 DIIIVDTAGRHKEDKALIE------EMKQISNVIHPHEVILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp SEEEEECCCCSSCCHHHHH------HHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSSCSS
T ss_pred CEEEEECCCcccchHHHHH------HHHHHHHhhcCceEEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCCCccc
Confidence 5678999998761111111 0111 22457999999999976 344455556666554556789999998654
Q ss_pred H
Q 016165 366 Q 366 (394)
Q Consensus 366 ~ 366 (394)
.
T Consensus 255 g 255 (443)
T 3dm5_A 255 G 255 (443)
T ss_dssp H
T ss_pred c
Confidence 3
No 411
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=98.08 E-value=1.5e-05 Score=67.13 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=60.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCC-----------------------------------CH
Q 016165 6 GPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNL-----------------------------------SR 50 (394)
Q Consensus 6 ~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L-----------------------------------~~ 50 (394)
+....||++|.+.+.+.|..+|.|++|+|+.++...++..-|. +.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~~ 84 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPE 84 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCCH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHHHHHhhhcccccH
Confidence 3346799999999999999999999999999999999887553 34
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 51 QDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 51 ~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+.|.+.+.+.|.+++|+++.+||.-+|.
T Consensus 85 ~~l~~aF~~fD~d~~G~I~~~el~~~l~ 112 (153)
T 3i5g_B 85 DALRNAFSMFDEDGQGFIPEDYLKDLLE 112 (153)
T ss_dssp HHHHHHHHTTCSSCSSCCCHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCeEeHHHHHHHHH
Confidence 5678888888888899999998877653
No 412
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=98.07 E-value=8.4e-06 Score=69.79 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHhhh-CCCCCCccchHHHHHHHHHc------CCCHHHHHHH-----------HHHHhcCCCCCCCHHH
Q 016165 11 CSKDHQKIYLEWFNYA-DSDGDGRITGNDATKFFALS------NLSRQDLKQV-----------WAIADAKRQGYLGYRE 72 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~-d~~~~g~i~g~~~~~~~~~s------~L~~~~L~~I-----------w~l~d~~~~g~l~~~e 72 (394)
||++++..+.++|..+ |.|++|+|+-++...++... +++.+.+.++ +..+|.+++|.++.+|
T Consensus 2 ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~E 81 (185)
T 2sas_A 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEE 81 (185)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHH
T ss_pred cCHHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHH
Confidence 7899999999999999 99999999999998888764 4667777654 8999999999999999
Q ss_pred HHHHHHHHH
Q 016165 73 FIAAMQLIS 81 (394)
Q Consensus 73 f~~a~~Li~ 81 (394)
|..+|....
T Consensus 82 f~~~~~~~~ 90 (185)
T 2sas_A 82 YLAMWEKTI 90 (185)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998886653
No 413
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=98.07 E-value=4.3e-06 Score=68.70 Aligned_cols=63 Identities=14% Similarity=0.367 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
...+..+|..+|+|++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+-+|.
T Consensus 75 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 139 (143)
T 3j04_B 75 EDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILK 139 (143)
T ss_dssp HHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHTTCCSSSCCCSTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence 45688899999999999999999999999887 8999999999999999999999999987764
No 414
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.06 E-value=8e-06 Score=80.75 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=41.1
Q ss_pred cceeecCCCCCchhhhhhhcccChHHHHHHH--hhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCC-e-EEEEEecCCc
Q 016165 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWF--AAKCDLILLLFDPHKLDISDEFKRVITSLRGHDD-K-IRVVLNKADQ 362 (394)
Q Consensus 287 ~~~l~Dt~g~lsGe~qrv~~~~~~~~iaral--~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~-~-viiv~nK~Dl 362 (394)
.+.++||||.+........ .+ +.+ +..||.+++++|+.. .......++.+.+. . + ..+|+||+|.
T Consensus 182 D~vIIDT~G~~~~~~~l~~------~l-~~i~~~~~~d~vllVvda~~---g~~~~~~~~~~~~~-~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 182 DVLIIDTAGRHKEEKGLLE------EM-KQIKEITNPDEIILVIDGTI---GQQAGIQAKAFKEA-VGEIGSIIVTKLDG 250 (432)
T ss_dssp SEEEEECCCSCSSHHHHHH------HH-HHTTSSSCCSEEEEEEEGGG---GGGHHHHHHHHHTT-SCSCEEEEEECSSS
T ss_pred CEEEEcCCCCccccHHHHH------HH-HHHHHHhcCcceeEEeeccc---cHHHHHHHHHHhhc-ccCCeEEEEeCCCC
Confidence 5678999998762111111 01 111 237999999999865 22344455555443 4 4 7899999997
Q ss_pred cC
Q 016165 363 VD 364 (394)
Q Consensus 363 ~~ 364 (394)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 415
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=98.06 E-value=7.3e-06 Score=69.66 Aligned_cols=63 Identities=16% Similarity=0.362 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
......+|..+|+|++|+|+.++.+.++...|++.+.+..++..+|.+++|.++.+||+.+|.
T Consensus 101 ~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 163 (176)
T 1nya_A 101 GPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVR 163 (176)
T ss_dssp HHHHHHHHHHTCSSCCSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999987763
No 416
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=98.06 E-value=9e-06 Score=67.20 Aligned_cols=62 Identities=21% Similarity=0.395 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHH-cC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFAL-SN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~-s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
...+..+|..+|.+++|+|+.++.+.++.. .| ++.+.+..++..+|.+++|.++.+||+-+|
T Consensus 87 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 151 (153)
T 3ox6_A 87 VKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151 (153)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 466788999999999999999999999987 56 899999999999999999999999998765
No 417
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=98.06 E-value=3e-06 Score=70.88 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHhhhCC--CCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADS--DGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~--~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.+|+++.+.+.++|..+|. +++|+|+.++...++...| ++...+..+ ..+|.+++|.++.+||..+|...
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l-~~~D~~~~g~i~~~eF~~~~~~~ 75 (156)
T 1wdc_C 2 KLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAV-GGTHKMGEKSLPFEEFLPAYEGL 75 (156)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCCCHHHHHHT-TCCSSTTSCEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHH-HhhCCCCCCeeeHHHHHHHHHHH
Confidence 4899999999999999999 9999999999999999877 678889999 99999999999999998877654
No 418
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=98.06 E-value=8.6e-06 Score=68.81 Aligned_cols=63 Identities=17% Similarity=0.428 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
......+|..+|.|++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+-+|.
T Consensus 94 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~ 158 (166)
T 2mys_B 94 EDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVIT 158 (166)
T ss_pred HHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHH
Confidence 35678899999999999999999999999887 8999999999999999999999999987764
No 419
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=98.05 E-value=8.4e-06 Score=68.36 Aligned_cols=63 Identities=13% Similarity=0.368 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHH--HHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWA--IADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~--l~d~~~~g~l~~~ef~~a~~ 78 (394)
...+...|..+|+|++|+|+.++.+.++...| ++.+.+.+++. .+|.+++|.++.+||+-+|.
T Consensus 84 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 150 (159)
T 2ovk_C 84 ADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVM 150 (159)
T ss_dssp HHHHHHHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCTTCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCCcEeHHHHHHHHh
Confidence 45678899999999999999999999999988 99999999999 88999999999999987664
No 420
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.04 E-value=9.9e-07 Score=94.55 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=76.5
Q ss_pred cccccceeec-----CCCCCc-hhhhhhhcccChHHHHHHHhhcCC--EEEE-----EeCCCCCCchHHHHHHHHHHhcC
Q 016165 283 SLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD--LILL-----LFDPHKLDISDEFKRVITSLRGH 349 (394)
Q Consensus 283 ~~l~~~~l~D-----t~g~ls-Ge~qrv~~~~~~~~iaral~~~~d--llLl-----~lD~~~~~~~~~~~~~l~~l~~~ 349 (394)
+.+..+++.+ .++.+| ||+||+. ||++++.+|+ ++|+ +||+.. ...++++|+.+++.
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~-------LAraL~~~p~~~lllLDEPT~gLD~~~---~~~l~~~L~~L~~~ 515 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIR-------LATQIGSGLTGVIYVLDEPTIGLHPRD---TERLIKTLKKLRDL 515 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHH-------HHHHHHTTCCSCEEEEECTTTTCCGGG---HHHHHHHHHHTTTT
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHH-------HHHHHhhCCCCcEEEEECCccCCCHHH---HHHHHHHHHHHHhc
Confidence 3455566532 578899 9999999 9999999887 8888 788776 88889999999888
Q ss_pred CCeEEEEEecCCccCHHHHHHHHhHhhh------ccceeeecCcccee
Q 016165 350 DDKIRVVLNKADQVDTQQLMRVYGALMW------SLGKVLNTPEVVRV 391 (394)
Q Consensus 350 ~~~viiv~nK~Dl~~~~~~~~~~~~~~~------~~G~i~~~~~~~~v 391 (394)
|.++|+|. |+.+.+...|+++.+ +.|+++..|.+.++
T Consensus 516 G~TvivVt-----Hd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~ 558 (916)
T 3pih_A 516 GNTVIVVE-----HDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDEL 558 (916)
T ss_dssp TCEEEEEC-----CCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHH
T ss_pred CCEEEEEe-----CCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhh
Confidence 99999998 777766556999999 89999988876654
No 421
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=98.04 E-value=4.8e-06 Score=71.02 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC---CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFALSN---LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~---L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.+++.+.++|..+|.|++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||..++.-+
T Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~~ 73 (172)
T 2znd_A 4 PDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI 73 (172)
T ss_dssp --CHHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999877 789999999999999999999999999887644
No 422
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.04 E-value=2.4e-06 Score=78.86 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=23.7
Q ss_pred cEEEEeecCCCchhHHHHHHHhccCCCCCcCCCcccce
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR 235 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~~~~~~vs~~p~t~r 235 (394)
..++++|.||+|||||+|.|.|... ..++..|++++
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~--~~~~~~~g~T~ 135 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA--SSVGAQPGITK 135 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------C
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc--cccCCCCCCcc
Confidence 5899999999999999999999875 45555555544
No 423
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=98.04 E-value=6.9e-06 Score=64.95 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhhC-CCCC-CccchHHHHHHHHH-cC--CC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 016165 14 DHQKIYLEWFNYAD-SDGD-GRITGNDATKFFAL-SN--LS-RQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81 (394)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~-g~i~g~~~~~~~~~-s~--L~-~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~ 81 (394)
++...+.+.|..+| .|++ |+|+.++.+.++.. .| ++ +..+.++..-+|.|++|.++++||+.+|.-..
T Consensus 19 ~~~~~l~~aF~~fD~~dg~~G~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~~~ 92 (106)
T 2h2k_A 19 ESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGELA 92 (106)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHH
Confidence 45668999999999 7886 79999999999976 45 43 36899999999999999999999998876543
No 424
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=98.03 E-value=2.9e-06 Score=73.42 Aligned_cols=67 Identities=19% Similarity=0.413 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc-------------CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-------------NLSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-------------~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
+++++...+.++|..+|.|++|+|+.++...++... .++...+..+|..+|.+++|.++.+||..++
T Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~ef~~~~ 113 (191)
T 3khe_A 34 TTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVC 113 (191)
T ss_dssp SCTTTTHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTCTTCSSSEEHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 378899999999999999999999999999999854 4778899999999999999999999998876
No 425
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=98.03 E-value=3.5e-06 Score=70.64 Aligned_cols=64 Identities=19% Similarity=0.404 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
....+..+|..+|+|++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|.
T Consensus 93 ~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 158 (161)
T 1dtl_A 93 SEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158 (161)
T ss_dssp HHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 455688999999999999999999999998877 8999999999999999999999999988775
No 426
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=98.02 E-value=1.2e-05 Score=68.59 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhCCCCCCccchHHHHHHHHH----------cCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFAL----------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~----------s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
+|.+.+.++|..+| +++|+|+.++...++.. .+++...+..++..+|.+++|.++.+||..+|.-+
T Consensus 1 e~~~~l~~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 76 (173)
T 1alv_A 1 EEVRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 76 (173)
T ss_dssp CHHHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHHH
Confidence 46788999999999 99999999999999987 46889999999999999999999999998887643
No 427
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=98.02 E-value=1.1e-05 Score=66.20 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
.......+|..+|++++|+|+.++.+.++...| ++.+.+..++..+| +++|.++.+||+.+|
T Consensus 82 ~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~l 145 (147)
T 4ds7_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALL 145 (147)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHS-SSCSSEEHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHH
Confidence 345678899999999999999999999999888 89999999999999 999999999998765
No 428
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=98.02 E-value=1.2e-05 Score=68.30 Aligned_cols=61 Identities=15% Similarity=0.443 Sum_probs=55.6
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhc--CCCCCCCHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADA--KRQGYLGYREFIAAM 77 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~--~~~g~l~~~ef~~a~ 77 (394)
..+.+.|..+|+|++|+|+.++.+.+|..-| ++.+.+..++..+|. |++|.++.+||+-.|
T Consensus 85 ~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m 149 (159)
T 3i5g_C 85 DEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKV 149 (159)
T ss_dssp HHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHH
Confidence 4577899999999999999999999999977 899999999999996 778999999997765
No 429
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=98.01 E-value=1.2e-05 Score=67.27 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
......+|..+|.+++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+-+|.
T Consensus 95 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 159 (161)
T 3fwb_A 95 LDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAICT 159 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 45678899999999999999999999999877 8999999999999999999999999987764
No 430
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=98.01 E-value=7.1e-06 Score=67.77 Aligned_cols=63 Identities=14% Similarity=0.347 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
...+..+|..+|+|++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|.
T Consensus 82 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1m45_A 82 TEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVL 146 (148)
T ss_dssp THHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 35688899999999999999999999999987 7899999999999999999999999987764
No 431
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.1e-05 Score=69.56 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
....+.+.|..+|+|++|+|+.++.+.+|...| ++.+.+.+++.-+| |+||.++.+||+..|
T Consensus 82 ~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~d-d~dG~I~~~EF~~~m 145 (176)
T 2lhi_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS-DGSGEINIQQFAALL 145 (176)
T ss_dssp HHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHH-TTSSCBCTTHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhhc-CCCCeEeHHHHHHHH
Confidence 345688899999999999999999999999877 88999999999999 999999999998765
No 432
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.99 E-value=2.2e-06 Score=74.06 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.9
Q ss_pred ccEEEEeecCCCchhHHHHHHHhcc
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+..++|+||||+|||||++++++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999999987
No 433
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=97.99 E-value=1.2e-05 Score=68.68 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
......+|..+|+|++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+.+|
T Consensus 83 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 146 (179)
T 2f2o_A 83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146 (179)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHC--CCCHHHHHHHHHHHCTTCSSSEEHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 34578899999999999999999999999987 899999999999999999999999997765
No 434
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.99 E-value=6.1e-06 Score=81.42 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=41.9
Q ss_pred cceeecCCCCCc--hhhhhhhcccChHHHHHHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCeEEEEEecCCccC
Q 016165 287 HITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (394)
Q Consensus 287 ~~~l~Dt~g~ls--Ge~qrv~~~~~~~~iaral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~viiv~nK~Dl~~ 364 (394)
.+.++||||... -....... ...+.+ +.+|+.+++++|+.. ..+.....+.+.+.-....+|+||+|...
T Consensus 181 DvvIIDTaGr~~~~~d~~lm~e---l~~i~~--~~~pd~vlLVlDa~~---gq~a~~~a~~f~~~~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 181 DIIIVDTAGRHGYGEETKLLEE---MKEMYD--VLKPDDVILVIDASI---GQKAYDLASRFHQASPIGSVIITKMDGTA 252 (433)
T ss_dssp SEEEEEECCCSSSCCTTHHHHH---HHHHHH--HHCCSEEEEEEEGGG---GGGGHHHHHHHHHHCSSEEEEEECGGGCS
T ss_pred CEEEEECCCCccccCCHHHHHH---HHHHHH--hhCCcceEEEEeCcc---chHHHHHHHHHhcccCCcEEEEecccccc
Confidence 456899999643 11111110 001222 337899999999976 34445555665544345678999999764
Q ss_pred H
Q 016165 365 T 365 (394)
Q Consensus 365 ~ 365 (394)
.
T Consensus 253 ~ 253 (433)
T 3kl4_A 253 K 253 (433)
T ss_dssp C
T ss_pred c
Confidence 3
No 435
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=97.98 E-value=8.7e-06 Score=71.18 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
++++...+.++|..+|.|++|+|+.++...++...| ++...+..++..+|.+++|.++.+||..+|
T Consensus 32 ~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~ 99 (204)
T 3e3r_A 32 GASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRAL 99 (204)
T ss_dssp --------CHHHHHHCTTCCSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHT
T ss_pred CchhHHHHHHHHHHHccCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 456677899999999999999999999999999877 788999999999999999999999998765
No 436
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.97 E-value=1e-05 Score=76.05 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=41.8
Q ss_pred cceeecCCCCCc--hhhhhhhcccChHHHH-HHHhhcCCEEEEEeCCCCCCchHHHHHHHHHHhcCCCe-EEEEEecCCc
Q 016165 287 HITLVDTPGVLS--GEKQRTQRAYDFTGVT-SWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVLNKADQ 362 (394)
Q Consensus 287 ~~~l~Dt~g~ls--Ge~qrv~~~~~~~~ia-ral~~~~dllLl~lD~~~~~~~~~~~~~l~~l~~~~~~-viiv~nK~Dl 362 (394)
.+.++||||... ....... . +. ...+..||.+++++|+.. ..+..+.++.+.+. .+ ..+|+||+|.
T Consensus 182 D~ViIDTpg~~~~~~~~~l~~-e-----l~~i~~~~~~d~vllVvda~~---g~~~~~~~~~~~~~-~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 182 EIIIVDTAGRHGYGEEAALLE-E-----MKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQA-SKIGTIIITKMDG 251 (297)
T ss_dssp SEEEEECCCSCCTTCHHHHHH-H-----HHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHT-CTTEEEEEECGGG
T ss_pred CEEEEeCCCCcccccHHHHHH-H-----HHHHHHHhcCCEEEEEeeCCc---hHHHHHHHHHHHhh-CCCCEEEEeCCCC
Confidence 467899999876 2211111 0 10 012457999999999875 33445555655543 44 6788999997
Q ss_pred cC
Q 016165 363 VD 364 (394)
Q Consensus 363 ~~ 364 (394)
..
T Consensus 252 ~~ 253 (297)
T 1j8m_F 252 TA 253 (297)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 437
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=97.97 E-value=3.9e-06 Score=70.83 Aligned_cols=62 Identities=26% Similarity=0.428 Sum_probs=49.1
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
.....+|..+|++++|+|+.++.+.++...|++.+.+.+++..+|.+++|.++.+||+.+|.
T Consensus 99 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 160 (166)
T 2aao_A 99 DHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGRIDYNEFVAMMQ 160 (166)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHTCC--------CCHHHHHCTTCSSSBCHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999987763
No 438
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=97.97 E-value=2.3e-05 Score=66.11 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNL---SRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L---~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
..+|+++...+.++|..+|.|++|+|+.++...++...|. +...+..++.-. +|.++.+||..+|.-
T Consensus 17 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~----dg~i~~~eF~~~~~~ 86 (166)
T 2mys_B 17 SMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTVFLTMFGE 86 (166)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHC----CCCcCHHHHHHHHHH
Confidence 4689999999999999999999999999999999998876 555666666532 577777777666653
No 439
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=97.97 E-value=9.2e-06 Score=67.80 Aligned_cols=64 Identities=22% Similarity=0.444 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHH--HhcCCCCCCCHHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAI--ADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l--~d~~~~g~l~~~ef~~a~~ 78 (394)
....+..+|..+|.+++|+|+.++.+.++...| ++...+..++.. +|.+++|.++.+||+.+|.
T Consensus 82 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 149 (156)
T 1wdc_C 82 TFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVM 149 (156)
T ss_dssp CHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHh
Confidence 346788999999999999999999999999987 899999999999 9999999999999987664
No 440
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=97.97 E-value=1e-05 Score=69.90 Aligned_cols=64 Identities=30% Similarity=0.530 Sum_probs=58.8
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.....+|..+|.|++|+|+.++.+.++...+++.+.+..+|..+|.|++|.++.+||+-+|.-+
T Consensus 123 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 186 (191)
T 3khe_A 123 ERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKI 186 (191)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHTTSSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCCHHHHHHHHccCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999999999778999999999999999999999999999888644
No 441
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=97.97 E-value=3.5e-06 Score=73.86 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC-------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN-------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~-------L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.+++++..+.+ |..+|.|++|+|+.++...++...| ++...+.++|..+|.+++|.++.+||..++..+
T Consensus 27 ~~~~~~~~l~~-F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~~ 102 (198)
T 1juo_A 27 FPGQTQDPLYG-YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL 102 (198)
T ss_dssp CTTCCCCTTHH-HHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH
T ss_pred CCccccHHHHH-HHHHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHHH
Confidence 67778888999 9999999999999999999999965 589999999999999999999999999888754
No 442
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.96 E-value=8e-06 Score=66.93 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
......+|..+|++++|+|+.++.+.++...| ++.+.+..++..+| +++|.++.+||+.+|
T Consensus 78 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~ 140 (142)
T 2bl0_C 78 EDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE-TEKGQIRYDNFINTM 140 (142)
T ss_dssp HHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence 34567788888888888888888888888776 77888888888888 888888888886543
No 443
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=97.96 E-value=8.5e-06 Score=66.68 Aligned_cols=65 Identities=15% Similarity=0.333 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+.....+..+|..+|+|++|+|+.++.+.++...| ++.+.+..++..+|. ++|.++.+||+.+|.
T Consensus 72 ~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~i~~~eF~~~~~ 138 (140)
T 1ggw_A 72 PGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPV-KDGMVNYHDFVQMIL 138 (140)
T ss_dssp SCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTTC-SSCCSTTTHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CCCcEeHHHHHHHHh
Confidence 34457789999999999999999999999998876 899999999999999 999999999987763
No 444
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=97.96 E-value=2.1e-05 Score=66.94 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=58.8
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
..+..+|..+|.|++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|.-.
T Consensus 74 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~ 139 (172)
T 2znd_A 74 TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVL 139 (172)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4577899999999999999999999999887 889999999999999999999999999887654
No 445
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=97.95 E-value=7.9e-06 Score=71.63 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc-C--CCHHHHHHHHHH----HhcCCCCCCCHHHHHHHHH
Q 016165 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-N--LSRQDLKQVWAI----ADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-~--L~~~~L~~Iw~l----~d~~~~g~l~~~ef~~a~~ 78 (394)
.......+..+|..+|.|++|+|+.++.+.++... | ++.+.+..++.. +|.|++|.++.+||+.+|.
T Consensus 109 ~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 182 (202)
T 2bec_A 109 LNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE 182 (202)
T ss_dssp TTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTT
T ss_pred cccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 34556788999999999999999999999999988 7 889999999988 9999999999999987664
No 446
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=97.95 E-value=3.9e-06 Score=73.97 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc----CCCHHHHHHHH-------HHHhcCCCCCCCHHHHHHHH
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS----NLSRQDLKQVW-------AIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----~L~~~~L~~Iw-------~l~d~~~~g~l~~~ef~~a~ 77 (394)
-.+|+++...+.++|..+|.|++|+|+.++...++... +++.+.+..++ ..+|.+++|.++.+||+.+|
T Consensus 28 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~~~~~l~~~~~~lf~~~D~d~dg~i~~~EF~~~~ 107 (208)
T 2hpk_A 28 EDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEAN 107 (208)
T ss_dssp --------CHHHHHHHHHCTTCSSEECHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCBTTTBEEGGGHHHHH
T ss_pred HHcCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 56899999999999999999999999999999998865 46788999999 99999999999999999988
Q ss_pred HH
Q 016165 78 QL 79 (394)
Q Consensus 78 ~L 79 (394)
..
T Consensus 108 ~~ 109 (208)
T 2hpk_A 108 RV 109 (208)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 447
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=97.95 E-value=9e-06 Score=67.94 Aligned_cols=62 Identities=29% Similarity=0.441 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
......+|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|
T Consensus 90 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~ 153 (158)
T 2jnf_A 90 QQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVM 153 (158)
T ss_dssp SSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCSSCCSEECSHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 34578899999999999999999999999887 889999999999999999999999998765
No 448
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=97.95 E-value=4.2e-06 Score=69.42 Aligned_cols=62 Identities=21% Similarity=0.490 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
....+..+|..+|+|++|+|+.++.+.++...| ++.+.+..++..+| +++|.++.+||+-+|
T Consensus 85 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~ 148 (151)
T 1w7j_B 85 TYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHE-DSNGCINYEAFLKHI 148 (151)
T ss_dssp ---CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCC-CTTSEEEHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCCCeEeHHHHHHHH
Confidence 345667799999999999999999999999988 89999999999999 999999999998765
No 449
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=97.93 E-value=3.1e-05 Score=67.36 Aligned_cols=64 Identities=27% Similarity=0.447 Sum_probs=58.9
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
..+..+|..+|.|++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+.+|.-.
T Consensus 93 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~ 158 (191)
T 1y1x_A 93 LSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFV 158 (191)
T ss_dssp HHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHH
Confidence 4567899999999999999999999999887 899999999999999999999999999888644
No 450
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Probab=97.93 E-value=1e-05 Score=63.18 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc---------CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS---------NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---------~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~ 83 (394)
+++...+.++|..+|.+ +|+|+.++.+.++... .++...+.++..-+|.|++|.++.+||+..|.-...+
T Consensus 6 ~~~~~~l~~~F~~fD~~-~g~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~ 84 (100)
T 1psr_A 6 ERSIIGMIDMFHKYTRR-DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDIATD 84 (100)
T ss_dssp HHHHHHHHHHHHHTCCT-TSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCeECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 45677899999999976 7999999999999762 3566788899999999999999999999988766555
Q ss_pred hc
Q 016165 84 QD 85 (394)
Q Consensus 84 ~~ 85 (394)
.+
T Consensus 85 ~~ 86 (100)
T 1psr_A 85 YH 86 (100)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 451
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=97.93 E-value=1.7e-05 Score=66.22 Aligned_cols=62 Identities=11% Similarity=0.250 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
......+|..+|+|++|+|+.++.+.++...| ++.+.+..++..+|.+ +|.++.+||+.+|.
T Consensus 86 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~~ 149 (156)
T 1wdc_B 86 EETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMIK 149 (156)
T ss_dssp HHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHCCEE-TTEECHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-CCEEeHHHHHHHHh
Confidence 34678899999999999999999999999987 8999999999999999 99999999987664
No 452
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=97.92 E-value=1.5e-05 Score=66.30 Aligned_cols=62 Identities=19% Similarity=0.377 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
...+..+|..+|+|++|+|+.++.+.++...| ++.+.+..++..+|. ++|.++.+||+.+|.
T Consensus 84 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~I~~~eF~~~~~ 147 (153)
T 2ovk_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPL-KNKQFNYNKMVDIKG 147 (153)
T ss_dssp TTHHHHHHHTTCSSCSSCCCHHHHHHHHHHSSSCCCHHHHHHHHHHCCE-ETTEECHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CCCEEeHHHHHHHHh
Confidence 34678899999999999999999999999988 899999999999999 999999999987764
No 453
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=97.92 E-value=7.1e-06 Score=68.40 Aligned_cols=61 Identities=23% Similarity=0.478 Sum_probs=51.3
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHc----------CCCHHHHHHHH----HHHhcCCCCCCCHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALS----------NLSRQDLKQVW----AIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----------~L~~~~L~~Iw----~l~d~~~~g~l~~~ef~~a~ 77 (394)
..+..+|..+|.|++|+|+.++.+.++... .++.+.+..+| ..+|.|++|.++.+||+.+|
T Consensus 68 ~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~~~~ 142 (143)
T 3a4u_B 68 ELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSL 142 (143)
T ss_dssp HHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------CCHHHHHHHHHHHHHHHCTTCSSEECHHHHHC--
T ss_pred HHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence 467788999999999999999999998775 48999998888 99999999999999997655
No 454
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=97.92 E-value=1.1e-05 Score=67.99 Aligned_cols=61 Identities=21% Similarity=0.391 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
...+.+.|..+|+|++|+|+.++.+.+|..-| |+.+.+.+++.-+|.+ +|.++.+||+-.|
T Consensus 84 ~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~m 146 (153)
T 3i5g_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIK 146 (153)
T ss_dssp HHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTTCCEE-TTEECHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHHhCCC-cCEEcHHHHHHHh
Confidence 34688999999999999999999999999877 8999999999999987 9999999998665
No 455
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=97.91 E-value=2e-05 Score=70.73 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=64.3
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHc---CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALS---NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQVT 90 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~~~~g~~~~ 90 (394)
..+..+|..+|.|++|+|+.++.+.++..- |++.+.+.+++..+|.|++|.++.+||+..|.--..-..+.+=-
T Consensus 133 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~~~~~~~~~d~~~ 209 (226)
T 2lvv_A 133 FELTVMFDTMDKDGSLLLELQEFKEALPKLKEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAVTKKLQVCGDPDG 209 (226)
T ss_dssp HHHHHHHHHHSCSSCCEECHHHHHHHHHHHHHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHcCCCCCeEcHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhcCCCCCCCccc
Confidence 467889999999999999999999999876 89888999999999999999999999999887766555554433
No 456
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.91 E-value=2.7e-06 Score=84.93 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=33.9
Q ss_pred cccccCCCCccc-EEEEeecCCCchhHHHHHHHhccCC
Q 016165 187 PLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYP 223 (394)
Q Consensus 187 ~~l~~~~~~~~~-~vaIvG~~gaGKSTLln~L~g~~~~ 223 (394)
.++++++|++.. +++|+||||||||||+++|+|...|
T Consensus 18 ~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 18 NGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp TTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ccccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 478999998887 9999999999999999999999865
No 457
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.91 E-value=1.6e-05 Score=65.18 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
.||++| +.++|..+|.|++|+|+.++...++...| ++...+..++.. +++|.++.+||..++.
T Consensus 1 sls~~e---l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~~~g~i~~~eF~~~~~ 65 (145)
T 2bl0_B 1 TASADQ---IQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQ---LNAKEFDLATFKTVYR 65 (145)
T ss_dssp CCCHHH---HHHHHHHHCTTCSSCEEGGGHHHHHHHTTCCCCHHHHHHHHHH---HTSSEECHHHHHHHHT
T ss_pred CCCHHH---HHHHHHHhCCCCcCccCHHHHHHHHHHhCCCCCHHHHHHHHHh---cCCCeEcHHHHHHHHH
Confidence 368887 99999999999999999999999999888 678888888877 7899999999987664
No 458
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=97.91 E-value=1.9e-05 Score=64.72 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNL--SRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L--~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
+|+++...+.++|..+|.|++|+|+.++...++...|. +...+..++.. ++|.++.+||+.+|.-
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~----~~g~i~~~eF~~~~~~ 67 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPINFTMFLTMFGE 67 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT----SSSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHH
Confidence 68999999999999999999999999999999999884 55666665554 7999999999887753
No 459
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=97.90 E-value=1.5e-05 Score=68.64 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=55.8
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCC--------CCCCHHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQ--------GYLGYREFIAAMQ 78 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~--------g~l~~~ef~~a~~ 78 (394)
.....+|..+|+|++|+|+.++.+.++...+++.+.+.+++..+|.+++ |.++.+||+-.|.
T Consensus 108 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~l~ 177 (180)
T 3mse_B 108 TFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYML 177 (180)
T ss_dssp CHHHHHHHHHCTTCSSCBCHHHHHHHTTTSSCCHHHHHHHHHHHHTC---------CCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHcCCCCCHHHHHHHHHHhhhccCcccccccCCeeeHHHHHHHHH
Confidence 5678999999999999999999999999888999999999999999988 9999999987763
No 460
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=97.90 E-value=9e-06 Score=63.60 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=51.2
Q ss_pred HHHHHHhhhCCCCCCccchHHHHHHHHH-----cCCCH-------------HHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 18 IYLEWFNYADSDGDGRITGNDATKFFAL-----SNLSR-------------QDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 18 ~y~~~F~~~d~~~~g~i~g~~~~~~~~~-----s~L~~-------------~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
.+..+|..+|.|++|+|+.++...++.. .|.+. ..+..++..+|.|++|.++.+||..+|
T Consensus 21 ~~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~ 98 (103)
T 1snl_A 21 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLAST 98 (103)
T ss_dssp CHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHH
T ss_pred CHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHH
Confidence 3678899999999999999999999986 35322 248889999999999999999998765
No 461
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.90 E-value=1.9e-05 Score=66.33 Aligned_cols=25 Identities=12% Similarity=0.388 Sum_probs=23.0
Q ss_pred ccEEEEeecCCCchhHHHHHHHhcc
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+..++|+|+||+|||||++++++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999999987
No 462
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=97.90 E-value=2e-05 Score=60.96 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCccchHHHHHHHHH-------cCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 016165 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81 (394)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~ 81 (394)
+++...+.++|..+|. .+|+|+.++.+.++.. -.++...+.++...+|.|++|.++.+||+..|.-..
T Consensus 5 ~~~~~~l~~~F~~fD~-~dg~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~ 79 (96)
T 1a4p_A 5 EHAMETMMFTFHKFAG-DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLT 79 (96)
T ss_dssp HHHHHHHHHHHHHHHG-GGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCeECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3567789999999994 5689999999999975 136888999999999999999999999998876544
No 463
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.90 E-value=3.1e-05 Score=79.23 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.5
Q ss_pred EEEEeecCCCchhHHHHHHHhccC
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSY 222 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~ 222 (394)
+|+|+|++|+|||||+|.|+|...
T Consensus 40 ~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 40 VVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEECCCCCCHHHHHHhHcCCCC
Confidence 799999999999999999999873
No 464
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=97.89 E-value=3e-05 Score=64.28 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhhCCCCCCccchHHHHHHHHH-cC--CCHHHHHHHHHH----HhcCCCCCCCHHHHHHHHHHH
Q 016165 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFAL-SN--LSRQDLKQVWAI----ADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~-s~--L~~~~L~~Iw~l----~d~~~~g~l~~~ef~~a~~Li 80 (394)
.....+..+|..+|.|++|+|+.++.+.++.. .| ++...+..++.. +|.+++|.++.+||+.+|.-+
T Consensus 72 ~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 145 (155)
T 3ll8_B 72 DKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGL 145 (155)
T ss_dssp CHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 34567889999999999999999999999977 34 888888888887 999999999999998776543
No 465
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=97.88 E-value=2e-05 Score=68.52 Aligned_cols=70 Identities=20% Similarity=0.404 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
-.+++ ++.+.++|..+|.|++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||..++.-.
T Consensus 21 ~~~~~--~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~ 92 (191)
T 1y1x_A 21 RHMND--NQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI 92 (191)
T ss_dssp CSSCT--TSCHHHHHHHHCTTCSSSBCHHHHHHHHCBTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred cccCC--HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 34454 56899999999999999999999999996553 689999999999999999999999999887643
No 466
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.87 E-value=4.1e-06 Score=75.52 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=19.6
Q ss_pred CcccccCCCCccc--EEEEeecCCCchhHHHHHHH-hcc
Q 016165 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLL-RTS 221 (394)
Q Consensus 186 ~~~l~~~~~~~~~--~vaIvG~~gaGKSTLln~L~-g~~ 221 (394)
.+..+++||++.+ +++|+||||||||||+++|+ |..
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3456778888766 99999999999999999999 986
No 467
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=97.87 E-value=1.2e-05 Score=70.46 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
...+..+|..+|.|++|+|+.++.+.+| ..| ++...+..|+..+|.|++|.++.+||+.+|.
T Consensus 125 ~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~ 188 (196)
T 3dtp_E 125 EDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILT 188 (196)
T ss_dssp HHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHHHHHSSCEETTEECHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHHHHHHcCCCCCCEEeHHHHHHHHH
Confidence 4567889999999999999999999999 888 9999999999999999999999999987663
No 468
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=97.86 E-value=2.7e-05 Score=67.89 Aligned_cols=63 Identities=24% Similarity=0.403 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC----CCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN----LSR---QDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~----L~~---~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
...+..+|..+|.|++|+|+.++.+.++...+ ++. +.+.+++..+|.|++|.++.+||+.+|+
T Consensus 121 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 190 (191)
T 3k21_A 121 KKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK 190 (191)
T ss_dssp HHHHHHHHHHHSTTCSSCBCHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHHc
Confidence 35678899999999999999999999998743 554 4689999999999999999999998875
No 469
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=97.85 E-value=1.1e-05 Score=70.67 Aligned_cols=63 Identities=22% Similarity=0.469 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHc----CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALS----NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
......+|..+|.|++|+|+.++.+.++... +++.+.+..++..+|.|++|.++.+||+.+|+
T Consensus 128 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~ 194 (197)
T 3pm8_A 128 KEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMS 194 (197)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence 3467889999999999999999999999987 47888999999999999999999999988774
No 470
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=97.84 E-value=2.5e-05 Score=67.66 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=52.1
Q ss_pred HHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 21 EWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 21 ~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.+|..+|.|++|+|+.++.+.++...| ++.+.+.+++..+|.|++|.++.+||+-+|.-.
T Consensus 117 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~ 178 (195)
T 1qv0_A 117 AVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGF 178 (195)
T ss_dssp HHHHHTC----CEECHHHHHHHHHHHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 899999999999999999999999888 679999999999999999999999998888644
No 471
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=97.84 E-value=8.8e-06 Score=68.23 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHhhhC--CCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYAD--SDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d--~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
.+|+++.+.+.++|..+| .+++|+|+.++...++...| ++...+.++|..+|.+ +|.++.+||+.+|.-
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~d~~-~g~i~~~eF~~~~~~ 74 (159)
T 2ovk_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMG-EKAYKLEEILPIYEE 74 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHTTCCSSTT-SCEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-CCeEcHHHHHHHHHH
Confidence 589999999999999999 99999999999999999877 6888999999999885 699999999877643
No 472
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=97.84 E-value=3.2e-05 Score=76.51 Aligned_cols=70 Identities=23% Similarity=0.392 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
-.+++++.+.+.++|..+|.|++|+|+.+|...+|...| ++.+.+..++..+|.|++|.++.+||..++.
T Consensus 304 ~~ls~eei~el~~~F~~fD~D~dG~Is~~EL~~~L~~lg~~~s~eel~~Lf~~~D~DgdG~IsfeEFl~ll~ 375 (450)
T 3sg6_A 304 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 375 (450)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTSSSSEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 368999999999999999999999999999999999866 6899999999999999999999999987764
No 473
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=97.84 E-value=5.1e-05 Score=63.21 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
-.+|+++...+.++|..+|.+++|+|+.++...++...| ++...+..++. +++|.++.+||..+|..
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~----~~~g~i~~~eF~~~~~~ 78 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPGPLNFTMFLSIFSD 78 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHT----TSSSCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH----hCCCcCcHHHHHHHHHH
Confidence 568999999999999999999999999999999999877 66777777764 47899999999887764
No 474
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=97.83 E-value=3.1e-05 Score=66.67 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=56.4
Q ss_pred HHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 20 LEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 20 ~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
..+|..+|.|++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+-+|.-.
T Consensus 112 ~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~~~~~ 174 (191)
T 1uhk_A 112 DALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGF 174 (191)
T ss_dssp HHHHHHHCTTCSSEECHHHHHHHHHHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3899999999999999999999999887 689999999999999999999999998888743
No 475
>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}
Probab=97.83 E-value=2.3e-05 Score=67.73 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHH-HcC---C------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFA-LSN---L------SRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~-~s~---L------~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
....+..+|..+|.|++|+|+.++.+.++. .-| + +.+.+.+++..+|.|++|.++.+||+..|.
T Consensus 96 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~ 169 (179)
T 3a8r_A 96 FDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLL 169 (179)
T ss_dssp HHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSTTCCSEECHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccccccccccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345788999999999999999999999998 555 3 667899999999999999999999987764
No 476
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.82 E-value=6.9e-06 Score=87.82 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=75.6
Q ss_pred ccccceee----c-CCCCCc-hhhhhhhcccChHHHHHHHhhcC--CEEEE-----EeCCCCCCchHHHHHHHHHHhcCC
Q 016165 284 LLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC--DLILL-----LFDPHKLDISDEFKRVITSLRGHD 350 (394)
Q Consensus 284 ~l~~~~l~----D-t~g~ls-Ge~qrv~~~~~~~~iaral~~~~--dllLl-----~lD~~~~~~~~~~~~~l~~l~~~~ 350 (394)
.|..+++. | .++.+| ||+||++ ||++++.++ +++|| +||+.. ...++++|+.|++.|
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~-------LA~aL~~~~~~~llILDEPTagLdp~~---~~~L~~~L~~Lr~~G 556 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIR-------LATQIGSRLTGVLYVLDEPSIGLHQRD---NDRLIATLKSMRDLG 556 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHH-------HHHHHTTCCCSCEEEEECTTTTCCGGG---HHHHHHHHHHHHTTT
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHH-------HHHHHhhCCCCCEEEEeCcccCCCHHH---HHHHHHHHHHHHhCC
Confidence 35566653 2 578889 9999999 999999985 88888 788776 788899999999889
Q ss_pred CeEEEEEecCCccCHHHHHHHHhHhhh------ccceeeecCcccee
Q 016165 351 DKIRVVLNKADQVDTQQLMRVYGALMW------SLGKVLNTPEVVRV 391 (394)
Q Consensus 351 ~~viiv~nK~Dl~~~~~~~~~~~~~~~------~~G~i~~~~~~~~v 391 (394)
.+||+|. |+.+.+...|+++.+ +.|+++..|.+.++
T Consensus 557 ~TVIvVe-----Hdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 557 NTLIVVE-----HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp CEEEEEC-----CCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred CEEEEEe-----cCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 9999998 777766545999998 78999988877654
No 477
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=97.82 E-value=7.7e-07 Score=70.02 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHc---C--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALS---N--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+...+..+|..+|+|++|+|+.++.+.++... | ++.+.+..++..+|.+++|.++.+||+..|+
T Consensus 39 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 107 (108)
T 2kyc_A 39 SSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQ 107 (108)
T ss_dssp CSSSHHHHCSSSCSCCSSCCCGGGTTTSHHHHSSSCCCCCTTTTHHHHTTTCCSSSSCCCSSHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHh
Confidence 34567889999999999999999999999876 3 8889999999999999999999999987764
No 478
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=97.81 E-value=4.1e-05 Score=68.40 Aligned_cols=65 Identities=6% Similarity=0.117 Sum_probs=57.1
Q ss_pred HHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 016165 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISL 82 (394)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li~~ 82 (394)
..+...|..+|.|++|+|+.++.+.++...| ++.+.+..++..+| |++|.++.+||+.+|..+..
T Consensus 117 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~l~~ 183 (220)
T 3sjs_A 117 ELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAFAAQ 183 (220)
T ss_dssp HHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999876 89999999999999 99999999999999877654
No 479
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=97.80 E-value=3e-05 Score=69.60 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc-CCC------HHHHHHHHHHH-----hcCCCCCCCHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-NLS------RQDLKQVWAIA-----DAKRQGYLGYREFIAAM 77 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-~L~------~~~L~~Iw~l~-----d~~~~g~l~~~ef~~a~ 77 (394)
.+|++++..+.++|..+|.|++|+|+.++....+.+. |++ ...+..+|..+ |.+++|.++.+||+.++
T Consensus 44 ~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~ 123 (226)
T 2lvv_A 44 DKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFR 123 (226)
T ss_dssp SCCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHH
Confidence 5899999999999999999999999999999855554 654 34555556555 99999999999998875
Q ss_pred HHH
Q 016165 78 QLI 80 (394)
Q Consensus 78 ~Li 80 (394)
...
T Consensus 124 ~~~ 126 (226)
T 2lvv_A 124 LML 126 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 480
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=97.80 E-value=4.3e-05 Score=62.94 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
...+..+|..+|+|++|+|+.++.+.++...| ++.+.+..++..+ |++|.++.+||+.+|
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~l 144 (146)
T 2qac_A 83 VEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF--SSEDNIDYKLFCEDI 144 (146)
T ss_dssp HHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH--CSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCCCcCcHHHHHHHH
Confidence 45688999999999999999999999999987 8999999999999 899999999998776
No 481
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=97.80 E-value=4.6e-05 Score=66.78 Aligned_cols=70 Identities=16% Similarity=0.376 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHhhhCCC-CCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 11 CSKDHQKIYLEWFNYADSD-GDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~-~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.|.-+...+.++|..+|.+ ++|+|+.++...++...| .+...+..++...|.+++|.++.+||..+|+.+
T Consensus 16 ~t~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~ 88 (204)
T 1jba_A 16 VGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLV 88 (204)
T ss_dssp CCHHHHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHH
Confidence 3456777889999999999 899999999999999988 678899999999999999999999999988754
No 482
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.80 E-value=9.2e-06 Score=71.36 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=23.1
Q ss_pred ccEEEEeecCCCchhHHHHHHHhcc
Q 016165 197 KPMVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 197 ~~~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+.+++|+||||||||||+++|+|..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999986
No 483
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=97.79 E-value=2.1e-05 Score=63.24 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=54.1
Q ss_pred HHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 19 YLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 19 y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+.++|..+|.+++|+|+-++...++...| ++.+.+..+|..+|.+++|.++.+||..+++
T Consensus 2 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (134)
T 1jfj_A 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (134)
T ss_dssp HHHHHHHHCTTCSSEEEHHHHHHHHHTTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCeEcHHHHHHHHH
Confidence 57899999999999999999999998876 5677999999999999999999999977653
No 484
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=97.79 E-value=3e-05 Score=78.10 Aligned_cols=68 Identities=19% Similarity=0.426 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHc----------CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS----------NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----------~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
+|++++..+.++|..+|.|++|+|+.+|...++... +.+.+.+.+++..+|.|++|.++.+||..+|.
T Consensus 349 ~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~ 426 (504)
T 3q5i_A 349 TTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCM 426 (504)
T ss_dssp SCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCTTCSSSEEHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHeeCCCCCCeEcHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 489999999999999999999999999998888765 36678999999999999999999999988764
No 485
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.79 E-value=1.8e-05 Score=74.62 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=22.3
Q ss_pred EEEEeecCCCchhHHHHHHHhcc
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+++++|+|||||||++..|++..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 89999999999999999999987
No 486
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=97.78 E-value=4.5e-06 Score=68.99 Aligned_cols=65 Identities=11% Similarity=0.213 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHH-hcCCCCCCCHHHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIA-DAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~-d~~~~g~l~~~ef~~a~~Li 80 (394)
.+.+.++|..+|.|++|+|+.++...++...| ++...+..++..+ |.+++|.++.+||+.+|...
T Consensus 3 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~~D~~~~g~i~~~eF~~~~~~~ 70 (148)
T 1m45_A 3 TRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVN 70 (148)
T ss_dssp CCCCTTCHHHHCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHC--CC--CCEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCeEcHHHHHHHHHHH
Confidence 34567889999999999999999999999877 5688999999999 99999999999999888765
No 487
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=97.75 E-value=4.9e-05 Score=66.68 Aligned_cols=70 Identities=17% Similarity=0.297 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHhhhCCC--CCCccchHHHHHHHHHcC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSD--GDGRITGNDATKFFALSN-LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~--~~g~i~g~~~~~~~~~s~-L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
.+|++|...+.++|..+|.| ++|+|+.++...++.... .+...+.+++...|.+++|.++.+||..+|..
T Consensus 30 ~~s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~ 102 (207)
T 2ehb_A 30 PFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGV 102 (207)
T ss_dssp SCCHHHHHHHHHHHHHHTTSSSCSSCEEHHHHHHHHHSCTTCCCHHHHHHHHHHCTTCSSEECHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHhccccccHHHHHHHHHHhcCCCCCeEeHHHHHHHHHH
Confidence 58899999999999999999 999999999999987622 23346788999999999999999999887763
No 488
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=97.74 E-value=4e-05 Score=67.52 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHc-C--CCHHHHHHH----HHHHhcCCCCCCCHHHHHHHH
Q 016165 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALS-N--LSRQDLKQV----WAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-~--L~~~~L~~I----w~l~d~~~~g~l~~~ef~~a~ 77 (394)
.......+|..+|.|++|+|+.++.+.++... | ++.+.+..+ +..+|.|++|.++.+||+..|
T Consensus 111 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~ 180 (208)
T 2ct9_A 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 56778899999999999999999999999875 6 889999888 999999999999999997654
No 489
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=97.74 E-value=3.6e-05 Score=61.82 Aligned_cols=56 Identities=29% Similarity=0.545 Sum_probs=35.3
Q ss_pred HHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 016165 19 YLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAA 76 (394)
Q Consensus 19 y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a 76 (394)
...+|..+|++++|+|+.++.+.++...|.+. +..++..+|.+++|.++.+||.-+
T Consensus 77 ~~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~--~~~~~~~~D~~~dg~i~~~ef~~~ 132 (134)
T 1jfj_A 77 LKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEK--VAEQVMKADANGDGYITLEEFLEF 132 (134)
T ss_dssp HHHHHHHHCCSSSSEEEHHHHHHHHTTTTCHH--HHHHHHHHHCSSSSEEEHHHHHHH
T ss_pred HHHHHHHHCCCCCCccCHHHHHHHHHHhCHHH--HHHHHHHhCCCCCCcEeHHHHHHH
Confidence 55666666666666666666666666555433 666666666666666666666543
No 490
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=97.73 E-value=0.00011 Score=63.32 Aligned_cols=63 Identities=16% Similarity=0.334 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhCCCCCCccchHHHHHHHHH--------------cCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 16 QKIYLEWFNYADSDGDGRITGNDATKFFAL--------------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~--------------s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
...+..+|..+|.|++|+|+.++.+.++.. ..++...+.++|..+|.|++|.++.+||..+|.
T Consensus 98 ~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 174 (190)
T 2l2e_A 98 NDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSK 174 (190)
T ss_dssp HHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSCCCSSCCCTHHHHHHHHHHHTCCSSCCBCHHHHHHHHH
T ss_pred HHHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccccCcccccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 346778999999999999999999999877 147899999999999999999999999988774
No 491
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=97.73 E-value=6.6e-06 Score=71.65 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=55.9
Q ss_pred HHHHHHhhhCCCCCCccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 016165 18 IYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (394)
Q Consensus 18 ~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~ 78 (394)
....+|..+|+|++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||+.+|.
T Consensus 83 ~l~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 143 (188)
T 1s6i_A 83 NLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMR 143 (188)
T ss_dssp STHHHHHHTTTTCSSEEEHHHHHHTTTTTTCCTTHHHHHHHHHCSSSSSEEETTHHHHTTS
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999976653
No 492
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=97.72 E-value=7.3e-05 Score=65.30 Aligned_cols=68 Identities=24% Similarity=0.330 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
.-.+|+++...+.++|..+|.|++|+|+.++...+|...| ++...+..+|..+ +|.++.+||+.+|..
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~----~g~i~~~eF~~~~~~ 117 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA----PGPINFTMFLTIFGD 117 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTS----SSCCBHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHc----cCCCcHHHHHHHHHH
Confidence 3569999999999999999999999999999999999877 6777888887766 899999999877643
No 493
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=97.72 E-value=4.5e-05 Score=63.35 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=59.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 7 PIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
....+|+++.+.+.++|..+|.|++|+|+.++...++...| ++...+..++..+ +|.++.+||..+|
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~----~g~i~~~eF~~~~ 74 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC----PGQLNFTAFLTLF 74 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS----SSCCCSHHHHHTT
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCCCCHHHHHHHH
Confidence 35679999999999999999999999999999999998877 7788888888876 8999999997655
No 494
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=97.71 E-value=8.8e-05 Score=62.70 Aligned_cols=59 Identities=15% Similarity=0.326 Sum_probs=53.7
Q ss_pred HHhhhCCCCCCccchHHHHHHHHHcC-------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 016165 22 WFNYADSDGDGRITGNDATKFFALSN-------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (394)
Q Consensus 22 ~F~~~d~~~~g~i~g~~~~~~~~~s~-------L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~Li 80 (394)
.|..+|.|++|+|+.++...++...| ++...+.+++..+|.+++|.++.+||..++.-+
T Consensus 6 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 71 (167)
T 1gjy_A 6 GYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL 71 (167)
T ss_dssp HHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 48889999999999999999999965 488999999999999999999999999887654
No 495
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=97.70 E-value=7.6e-05 Score=66.73 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHhhhCCC--CCCccchHHHHHHHHHcC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 016165 10 SCSKDHQKIYLEWFNYADSD--GDGRITGNDATKFFALSN-LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (394)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~--~~g~i~g~~~~~~~~~s~-L~~~~L~~Iw~l~d~~~~g~l~~~ef~~a~~L 79 (394)
.+|++|...+.++|..+|.| ++|+|+.++...++.... .+...+.+++...|.+++|.++.+||..+|..
T Consensus 41 ~ls~~ei~~l~~~F~~~D~d~~~~G~I~~~El~~~l~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 113 (226)
T 2zfd_A 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSV 113 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHSCSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCCeEcHHHHHHHHhccCcccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence 58999999999999999999 999999999999997622 22345678999999999999999999887764
No 496
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.69 E-value=1.3e-05 Score=70.53 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=22.4
Q ss_pred cEEEEeecCCCchhHHHHHHHhcc
Q 016165 198 PMVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 198 ~~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
..++|+||||||||||+|+|+|..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999976
No 497
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.69 E-value=1.4e-05 Score=69.61 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.3
Q ss_pred EEEEeecCCCchhHHHHHHHhccC
Q 016165 199 MVMLLGQYSTGKTTFIKHLLRTSY 222 (394)
Q Consensus 199 ~vaIvG~~gaGKSTLln~L~g~~~ 222 (394)
+++|+||||||||||+++|+|...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999873
No 498
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.69 E-value=4.6e-05 Score=75.01 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=26.8
Q ss_pred ccCCCCccc-EEEEeecCCCchhHHHHHHHhcc
Q 016165 190 TNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTS 221 (394)
Q Consensus 190 ~~~~~~~~~-~vaIvG~~gaGKSTLln~L~g~~ 221 (394)
+++++. ++ +++++|++|+||||++..|++..
T Consensus 91 ~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCCC-SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccCC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666 55 89999999999999999999987
No 499
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=97.69 E-value=2e-05 Score=71.56 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHcCCCH--------HHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 016165 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSR--------QDLKQVWAIADAKRQGYLGYREFIAAM 77 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~--------~~L~~Iw~l~d~~~~g~l~~~ef~~a~ 77 (394)
-.+|+.+.+.+.++|..+|.|++|+|+.++...++...|.+. ..+..+|..+|.+++|.++.+||+..|
T Consensus 8 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~l~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~Ef~~~~ 84 (263)
T 2f33_A 8 LQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVL 84 (263)
T ss_dssp TTTSCCCHHHHHHHHHHHCTTCSSSBCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHTTGGGCCBCHHHHHHHT
T ss_pred hhcCcccHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 468888999999999999999999999999999998776432 577899999999999999999998765
No 500
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=97.69 E-value=5.9e-05 Score=64.79 Aligned_cols=70 Identities=6% Similarity=0.043 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHhhhCC-----CC-C--CccchHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHH
Q 016165 9 GSCSKDHQKIYLEWFNYADS-----DG-D--GRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGY-LGYREFIAAMQL 79 (394)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~-----~~-~--g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~d~~~~g~-l~~~ef~~a~~L 79 (394)
-.+|++|...+.+.|..+|+ ++ + |+|+.++... +...|.+.. ..+|+.+.|.+++|. ++.+||..+|..
T Consensus 12 ~~ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l~~~g~~~~-~~~l~~~~D~d~~G~~I~~~EF~~~~~~ 89 (183)
T 1dgu_A 12 TFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKANPF-KERICRVFSTSPAKDSLSFEDFLDLLSV 89 (183)
T ss_dssp CSCCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-STTSSSCTT-HHHHHHHHSCSSSSCCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHH-HHhhhcCcH-HHHHHHHhCCCCCCCEecHHHHHHHHHH
Confidence 45899999999999999999 68 8 9999999999 888787644 468999999999999 999999988864
Q ss_pred H
Q 016165 80 I 80 (394)
Q Consensus 80 i 80 (394)
.
T Consensus 90 ~ 90 (183)
T 1dgu_A 90 F 90 (183)
T ss_dssp H
T ss_pred h
Confidence 3
Done!