BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016166
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E22|A Chain A, Crystal Structure Of Xanthan Lyase In Complex With Mannose
Length = 752
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 39 SKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSH--------KRQTI 90
+KR +RT ++ N++PA A R WI HGT+ S +S+ +
Sbjct: 572 TKREARTGTWKQINNRPATPSTAVTR---NYETMWIDHGTNPSGASYGYVLLPNKTSAQV 628
Query: 91 NCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLM 127
Y+ P+ ++ SG +S E+ LGL+
Sbjct: 629 GAYAADPAIE--------IVVNTSGVQSVKEKTLGLV 657
>pdb|1J0M|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
pdb|1J0N|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
Length = 752
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 39 SKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSH--------KRQTI 90
+KR +RT ++ N++PA A R WI HGT+ S +S+ +
Sbjct: 572 TKREARTGTWKQINNRPATPSTAVTR---NYETMWIDHGTNPSGASYGYVLLPNKTSAQV 628
Query: 91 NCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLM 127
Y+ P+ ++ SG +S E+ LGL+
Sbjct: 629 GAYAADPAIE--------IVVNTSGVQSVKEKTLGLV 657
>pdb|1X1H|A Chain A, Crystal Structure Of Xanthan Lyase (N194a)
pdb|1X1I|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) Complexed With
A Product
pdb|1X1J|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) With A
Substrate
Length = 752
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 39 SKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSH--------KRQTI 90
+KR +RT ++ N++PA A R WI HGT+ S +S+ +
Sbjct: 572 TKREARTGTWKQINNRPATPSTAVTR---NYETMWIDHGTNPSGASYGYVLLPNKTSAQV 628
Query: 91 NCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLM 127
Y+ P+ ++ SG +S E+ LGL+
Sbjct: 629 GAYAADPAIE--------IVVNTSGVQSVKEKTLGLV 657
>pdb|1YPX|A Chain A, Crystal Structure Of The Putative Vitamin-B12 Independent
Methionine Synthase From Listeria Monocytogenes,
Northeast Structural Genomics Target Lmr13
Length = 375
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 121 EQELGLMSITDNSIKNSWG-----PNEDSISQNAAGGGVEANDV 159
++E+GL SITD + +W N D + A GG++ + V
Sbjct: 53 QKEVGLKSITDGEFRRAWWHFDFLENLDGVEGYDAAGGIQFSKV 96
>pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|B Chain B, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|C Chain C, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|D Chain D, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|E Chain E, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|F Chain F, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|G Chain G, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|H Chain H, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|I Chain I, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|J Chain J, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|K Chain K, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|L Chain L, Mannitol Dehydrogenase From Agaricus Bisporus
Length = 265
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 205 KDLAFCEDDDLYEDFN----MDEMDLNFENYEELFGVTLNHSEELLE----NGGIESLFG 256
+D AF D +++ FN + ++ L + + VT + S +++ NG + +F
Sbjct: 114 EDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIV-VTSSMSSQIINQSSLNGSLTQVF- 171
Query: 257 TKDMSAADSNCQGAVAAEGSSAGL-VNAMQPACSN 290
AA SN +AAE +SAG+ VNA+ P N
Sbjct: 172 YNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVN 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,258,994
Number of Sequences: 62578
Number of extensions: 433261
Number of successful extensions: 1030
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 10
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)