Query 016166
Match_columns 394
No_of_seqs 193 out of 566
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:01:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 98.3 2.2E-07 7.4E-12 75.5 3.2 84 2-91 3-100 (101)
2 2jun_A Midline-1; B-BOX, TRIM, 94.5 0.011 3.8E-07 47.4 1.4 43 46-88 4-49 (101)
3 2yvr_A Transcription intermedi 91.7 0.066 2.3E-06 38.0 1.6 44 42-91 3-46 (50)
4 2d8u_A Ubiquitin ligase TRIM63 90.9 0.096 3.3E-06 38.7 1.9 45 41-91 4-49 (64)
5 2ffw_A Midline-1; B-BOX, ring 90.3 0.09 3.1E-06 41.3 1.4 44 45-88 30-76 (78)
6 2did_A Tripartite motif protei 87.6 0.25 8.5E-06 35.4 2.0 40 45-91 8-48 (53)
7 3ddt_A E3 ubiquitin-protein li 87.4 0.23 7.8E-06 34.9 1.7 41 45-91 6-47 (48)
8 1fre_A Nuclear factor XNF7; zi 87.0 0.45 1.6E-05 32.3 3.0 27 47-74 5-31 (42)
9 2dja_A Midline-2; tripartite m 83.8 0.45 1.5E-05 36.9 1.9 43 43-91 16-59 (84)
10 2yrg_A Tripartite motif-contai 80.6 0.71 2.4E-05 34.0 1.9 41 44-91 13-54 (59)
11 2ffw_A Midline-1; B-BOX, ring 79.9 0.58 2E-05 36.6 1.2 43 2-44 30-75 (78)
12 2csv_A Tripartite motif protei 73.6 1.1 3.7E-05 34.0 1.2 39 46-91 19-57 (72)
13 2d8v_A Zinc finger FYVE domain 70.9 1.8 6.3E-05 33.7 1.9 47 43-91 6-53 (67)
14 2egm_A Tripartite motif-contai 65.6 1 3.5E-05 33.0 -0.5 28 46-74 19-46 (57)
15 2fc7_A ZZZ3 protein; structure 64.6 9.1 0.00031 30.4 4.8 50 41-91 18-74 (82)
16 3ogl_Q JAZ1 incomplete degron 59.2 4.6 0.00016 24.8 1.7 18 358-375 3-20 (21)
17 2e5r_A Dystrobrevin alpha; ZZ 56.0 7.1 0.00024 29.5 2.6 35 41-77 9-47 (63)
18 2did_A Tripartite motif protei 50.8 8.6 0.00029 27.1 2.3 40 3-49 9-49 (53)
19 2lri_C Autoimmune regulator; Z 46.2 12 0.00041 28.4 2.6 43 3-53 13-58 (66)
20 1fre_A Nuclear factor XNF7; zi 43.9 10 0.00035 25.4 1.7 31 3-34 4-35 (42)
21 2yrg_A Tripartite motif-contai 42.6 14 0.00047 26.9 2.3 30 3-33 15-45 (59)
22 4hc9_A Trans-acting T-cell-spe 41.0 6.6 0.00023 33.1 0.4 74 1-74 4-89 (115)
23 2k0a_A PRE-mRNA-splicing facto 37.8 6.3 0.00021 33.2 -0.2 51 22-72 22-79 (109)
24 2dja_A Midline-2; tripartite m 37.6 23 0.00079 27.0 3.0 44 3-52 19-63 (84)
25 2d8u_A Ubiquitin ligase TRIM63 36.1 19 0.00065 26.0 2.2 45 3-53 9-54 (64)
26 2yvr_A Transcription intermedi 34.3 20 0.0007 24.7 2.0 32 3-34 7-38 (50)
27 2yqq_A Zinc finger HIT domain- 32.1 23 0.00079 26.4 2.1 24 45-69 12-35 (56)
28 2egm_A Tripartite motif-contai 31.8 13 0.00045 26.9 0.7 30 3-33 19-49 (57)
29 1f62_A Transcription factor WS 31.7 34 0.0012 23.9 2.9 44 4-52 2-48 (51)
30 1mm2_A MI2-beta; PHD, zinc fin 31.6 44 0.0015 24.5 3.6 25 3-35 10-34 (61)
31 3ogk_Q JAZ1 incomplete degron 28.5 22 0.00075 22.1 1.2 19 361-379 1-19 (22)
32 2yql_A PHD finger protein 21A; 27.5 24 0.00082 25.4 1.5 25 3-35 10-34 (56)
33 1v6g_A Actin binding LIM prote 26.8 18 0.00062 27.1 0.7 61 14-75 3-73 (81)
34 1z60_A TFIIH basal transcripti 26.8 16 0.00053 27.6 0.3 31 47-77 17-50 (59)
35 1z60_A TFIIH basal transcripti 26.0 12 0.0004 28.3 -0.5 32 4-35 17-51 (59)
36 2rp5_A Putative uncharacterize 25.6 6.1 0.00021 34.1 -2.4 30 218-258 88-117 (136)
37 3ddt_A E3 ubiquitin-protein li 25.5 34 0.0012 23.5 1.9 24 11-34 15-39 (48)
38 2jne_A Hypothetical protein YF 24.7 57 0.0019 27.2 3.3 57 1-72 31-88 (101)
39 1x63_A Skeletal muscle LIM-pro 23.8 19 0.00066 26.9 0.4 61 14-74 3-73 (82)
40 2ehe_A Four and A half LIM dom 23.5 50 0.0017 24.6 2.7 62 14-75 3-74 (82)
41 4gne_A Histone-lysine N-methyl 23.1 70 0.0024 26.5 3.7 61 3-72 16-84 (107)
42 2csv_A Tripartite motif protei 22.5 34 0.0011 25.5 1.5 31 3-34 19-49 (72)
43 2egq_A FHL1 protein; LIM domai 21.8 20 0.00069 26.5 0.1 57 15-71 4-73 (77)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.33 E-value=2.2e-07 Score=75.46 Aligned_cols=84 Identities=18% Similarity=0.445 Sum_probs=67.1
Q ss_pred CCCCCccCC---CCeeEEecCCccccccccccccccccchhhccccc-c---------cccccCCCCceeeccCCccccc
Q 016166 2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRT-L---------LCERCNSQPALVRCAEERVSLC 68 (394)
Q Consensus 2 ~~lCd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~Rv-~---------LCd~C~s~PA~v~C~~D~asLC 68 (394)
+..|++|.. .+|+.+|..+.+.||..|...+|..+...++|.++ + +|+.+...+..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 357999984 68999999999999999999999877766788765 2 3666555568899999999999
Q ss_pred ccccc-CCcCCCCCCCCCcccccc
Q 016166 69 QNCDW-IGHGTSTSASSHKRQTIN 91 (394)
Q Consensus 69 ~~CD~-~~HsAN~la~rHqRvpl~ 91 (394)
..|.. ..|. .|..+||.
T Consensus 83 ~~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 83 ALCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp HHHHHHTTTS------SSCBCCCC
T ss_pred hhcCCCCCcC------CCCeecCC
Confidence 99986 4554 46666653
No 2
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.52 E-value=0.011 Score=47.41 Aligned_cols=43 Identities=28% Similarity=0.571 Sum_probs=36.9
Q ss_pred ccccccCC---CCceeeccCCccccccccccCCcCCCCCCCCCccc
Q 016166 46 LLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ 88 (394)
Q Consensus 46 ~LCd~C~s---~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRv 88 (394)
..|++|.. .+|+.+|..|..+||..|....|..+....+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 57999984 57999999999999999998888777667788876
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=91.68 E-value=0.066 Score=37.95 Aligned_cols=44 Identities=23% Similarity=0.538 Sum_probs=34.7
Q ss_pred ccccccccccCCCCceeeccCCccccccccccCCcCCCCCCCCCcccccc
Q 016166 42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (394)
Q Consensus 42 H~Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRvpl~ 91 (394)
..|...|..+...+-.+||..|...+|..|....|. .|..+||.
T Consensus 3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ 46 (50)
T 2yvr_A 3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE 46 (50)
T ss_dssp CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence 455667888877788999999999999999875553 67776665
No 4
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=90.91 E-value=0.096 Score=38.74 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=34.2
Q ss_pred cccccccccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCcccccc
Q 016166 41 RHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (394)
Q Consensus 41 RH~Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl~ 91 (394)
+..+..+|..+...+..+||..|...+|..|... .|. .|..+||.
T Consensus 4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 49 (64)
T 2d8u_A 4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 49 (64)
T ss_dssp CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHH
Confidence 4455667888877788999999999999999864 453 46655554
No 5
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=90.31 E-value=0.09 Score=41.29 Aligned_cols=44 Identities=27% Similarity=0.559 Sum_probs=36.1
Q ss_pred cccccccCC---CCceeeccCCccccccccccCCcCCCCCCCCCccc
Q 016166 45 TLLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ 88 (394)
Q Consensus 45 v~LCd~C~s---~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRv 88 (394)
...|+.|.. .+|+.+|..|.+++|..|-...|.......+|+.+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 367999975 56899999999999999998768766667788764
No 6
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=87.63 E-value=0.25 Score=35.40 Aligned_cols=40 Identities=20% Similarity=0.465 Sum_probs=31.0
Q ss_pred cccccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCcccccc
Q 016166 45 TLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (394)
Q Consensus 45 v~LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl~ 91 (394)
..+|..+. .+..+||..|...+|..|... .|. .|..+||.
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLS 48 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECC
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHH
Confidence 34677776 678899999999999999873 443 67777765
No 7
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=87.45 E-value=0.23 Score=34.95 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=30.4
Q ss_pred cccccccCCCCceeeccCCcccccccccc-CCcCCCCCCCCCcccccc
Q 016166 45 TLLCERCNSQPALVRCAEERVSLCQNCDW-IGHGTSTSASSHKRQTIN 91 (394)
Q Consensus 45 v~LCd~C~s~PA~v~C~~D~asLC~~CD~-~~HsAN~la~rHqRvpl~ 91 (394)
..+|......+..+||..|...+|..|.. ..|. .|..+||.
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence 34677766567889999999999999974 3454 56666654
No 8
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=86.99 E-value=0.45 Score=32.29 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=22.4
Q ss_pred cccccCCCCceeeccCCccccccccccC
Q 016166 47 LCERCNSQPALVRCAEERVSLCQNCDWI 74 (394)
Q Consensus 47 LCd~C~s~PA~v~C~~D~asLC~~CD~~ 74 (394)
+|.... .+..+||..|...+|..|...
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~ 31 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDS 31 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence 566665 567899999999999999873
No 9
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=83.83 E-value=0.45 Score=36.91 Aligned_cols=43 Identities=19% Similarity=0.496 Sum_probs=31.4
Q ss_pred cccccccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCcccccc
Q 016166 43 SRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (394)
Q Consensus 43 ~Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl~ 91 (394)
.+..+|..+...+-.+||..|...+|..|... .|. .|..+||.
T Consensus 16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 59 (84)
T 2dja_A 16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN 59 (84)
T ss_dssp SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHH
Confidence 44456777766678999999999999999873 443 46555544
No 10
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.64 E-value=0.71 Score=34.04 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=30.7
Q ss_pred ccccccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCcccccc
Q 016166 44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (394)
Q Consensus 44 Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl~ 91 (394)
+..+|..+. .+..+||..|...+|..|... .|. .|..+||.
T Consensus 13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ 54 (59)
T 2yrg_A 13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTS 54 (59)
T ss_dssp CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECC
T ss_pred cCccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHH
Confidence 335677775 578899999999999999874 343 57776765
No 11
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=79.88 E-value=0.58 Score=36.59 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=35.2
Q ss_pred CCCCCccCC---CCeeEEecCCccccccccccccccccchhhcccc
Q 016166 2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR 44 (394)
Q Consensus 2 ~~lCd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~R 44 (394)
+..|++|.. .+|+-.|..+.+.||..|=...|...+..++|.-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 357999986 6799999999999999998877876666667764
No 12
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=73.58 E-value=1.1 Score=33.96 Aligned_cols=39 Identities=18% Similarity=0.443 Sum_probs=29.5
Q ss_pred ccccccCCCCceeeccCCccccccccccCCcCCCCCCCCCcccccc
Q 016166 46 LLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (394)
Q Consensus 46 ~LCd~C~s~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRvpl~ 91 (394)
.+|..+. .+-.+||..|...+|..|....|. .|..+||.
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ 57 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVE 57 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHH
Confidence 4677774 678899999999999999874453 56665543
No 13
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=70.95 E-value=1.8 Score=33.67 Aligned_cols=47 Identities=28% Similarity=0.458 Sum_probs=38.2
Q ss_pred cccccccccCCCCceeeccCC-ccccccccccCCcCCCCCCCCCcccccc
Q 016166 43 SRTLLCERCNSQPALVRCAEE-RVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (394)
Q Consensus 43 ~Rv~LCd~C~s~PA~v~C~~D-~asLC~~CD~~~HsAN~la~rHqRvpl~ 91 (394)
.-.+.|-+|... |+++|..| .-..|..|-+..|- ...-+.|+.++..
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYH 53 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCC
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeecc
Confidence 345789999876 99999988 77899999999995 4456789887754
No 14
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.63 E-value=1 Score=32.98 Aligned_cols=28 Identities=14% Similarity=0.434 Sum_probs=23.3
Q ss_pred ccccccCCCCceeeccCCccccccccccC
Q 016166 46 LLCERCNSQPALVRCAEERVSLCQNCDWI 74 (394)
Q Consensus 46 ~LCd~C~s~PA~v~C~~D~asLC~~CD~~ 74 (394)
.+|..+. .+..+||..|...+|..|...
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~ 46 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRES 46 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHS
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCC
Confidence 4577774 678899999999999999863
No 15
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=64.61 E-value=9.1 Score=30.37 Aligned_cols=50 Identities=22% Similarity=0.515 Sum_probs=33.2
Q ss_pred cccccccccccCCCCc---eeeccCCcc----ccccccccCCcCCCCCCCCCcccccc
Q 016166 41 RHSRTLLCERCNSQPA---LVRCAEERV----SLCQNCDWIGHGTSTSASSHKRQTIN 91 (394)
Q Consensus 41 RH~Rv~LCd~C~s~PA---~v~C~~D~a----sLC~~CD~~~HsAN~la~rHqRvpl~ 91 (394)
.|.. ..|+.|...|- .+.|..|.- -||+.|-..++....-...|.-++|.
T Consensus 18 ~H~~-~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 18 QHVG-FKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp EESS-CCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred eeCc-CCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 4444 37999998874 478999864 69999998765433323356554444
No 16
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=59.25 E-value=4.6 Score=24.85 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=16.1
Q ss_pred hhhhhHHHHHhHhhhhhc
Q 016166 358 SASRSKAVLRYKEKKKTR 375 (394)
Q Consensus 358 ~~~r~~a~~RYkeKkk~R 375 (394)
+.+|...+-||-||+|-|
T Consensus 3 p~aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDR 20 (26)
T ss_pred chhHHHHHHHHHHHhhcc
Confidence 368999999999999987
No 17
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.99 E-value=7.1 Score=29.47 Aligned_cols=35 Identities=37% Similarity=0.856 Sum_probs=26.6
Q ss_pred cccccccccccCCCC---ceeeccCC-ccccccccccCCcC
Q 016166 41 RHSRTLLCERCNSQP---ALVRCAEE-RVSLCQNCDWIGHG 77 (394)
Q Consensus 41 RH~Rv~LCd~C~s~P---A~v~C~~D-~asLC~~CD~~~Hs 77 (394)
.|. ..|+.|...| ..+.|..| .--||+.|-..+..
T Consensus 9 ~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~ 47 (63)
T 2e5r_A 9 FHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA 47 (63)
T ss_dssp CSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCC
T ss_pred eeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCc
Confidence 455 6799999887 34779888 45599999887643
No 18
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=50.77 E-value=8.6 Score=27.12 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=28.8
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-ccccccchhhccccccccc
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCE 49 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsaN~La~RH~Rv~LCd 49 (394)
.+|..=+ .+-.+||..|...+|..|-. .-|. .|..++|-+
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~e 49 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSG 49 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCC
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHH
Confidence 4566665 56889999999999999986 5553 455555443
No 19
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=46.24 E-value=12 Score=28.36 Aligned_cols=43 Identities=28% Similarity=0.592 Sum_probs=27.7
Q ss_pred CCCCccCCCCeeEEecCCccccccccccccccc--c-chhhcccccccccccCC
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA--N-ALSKRHSRTLLCERCNS 53 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~~vHsa--N-~La~RH~Rv~LCd~C~s 53 (394)
..|.+|+.. +...+|..|++..|.. + +|...-...|.|..|..
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCcCCCCCC--------CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 468888853 4567788899888864 1 34444445566666654
No 20
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=43.93 E-value=10 Score=25.35 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=24.0
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-cccc
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~-~vHs 34 (394)
.+|..=+ .+-.+||..|...+|..|-. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 4566665 46789999999999999986 4553
No 21
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.64 E-value=14 Score=26.95 Aligned_cols=30 Identities=27% Similarity=0.826 Sum_probs=23.6
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-ccc
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVH 33 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~-~vH 33 (394)
.+|..-+ .+-.+||..|...+|..|-. .-|
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH 45 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH 45 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC
Confidence 4566665 46789999999999999986 445
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=41.00 E-value=6.6 Score=33.12 Aligned_cols=74 Identities=23% Similarity=0.521 Sum_probs=47.9
Q ss_pred CCCCCCccCCCCeeEEecCCcc-ccccccc--cccccccchh-hcccc-------cccccccCCCCcee-eccCCccccc
Q 016166 1 MGYMCDFCGDQRSIVYCRSDAA-CLCLSCD--RNVHLANALS-KRHSR-------TLLCERCNSQPALV-RCAEERVSLC 68 (394)
Q Consensus 1 M~~lCd~C~~a~A~vyC~aD~A-~LC~~CD--~~vHsaN~La-~RH~R-------v~LCd~C~s~PA~v-~C~~D~asLC 68 (394)
+++.|..|+.....+|=+.+.. .||..|. .+.|..|.-. ....| ...|..|......+ +=..+...||
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 3678999998877777766654 7999999 4555554422 11111 24589998776443 3344557899
Q ss_pred cccccC
Q 016166 69 QNCDWI 74 (394)
Q Consensus 69 ~~CD~~ 74 (394)
-.|-.-
T Consensus 84 NaCgl~ 89 (115)
T 4hc9_A 84 NACGLY 89 (115)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 999854
No 23
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.82 E-value=6.3 Score=33.23 Aligned_cols=51 Identities=20% Similarity=0.511 Sum_probs=28.9
Q ss_pred cccccccccccccccchhhcccccccccccCCCCceeeccCCc-------cccccccc
Q 016166 22 ACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER-------VSLCQNCD 72 (394)
Q Consensus 22 A~LC~~CD~~vHsaN~La~RH~Rv~LCd~C~s~PA~v~C~~D~-------asLC~~CD 72 (394)
+.||..||-+--.-....+-...+.+|+.|....-.-+|..|. |..|..|-
T Consensus 22 G~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 22 GLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp CEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred hhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhh
Confidence 4566666655444433344445566888776555444454443 56666665
No 24
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=37.64 E-value=23 Score=26.99 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=31.3
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-ccccccchhhcccccccccccC
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCERCN 52 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsaN~La~RH~Rv~LCd~C~ 52 (394)
..|..=+..+-.+||..|...+|..|-. .-|. .|..+++-+.-.
T Consensus 19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~ 63 (84)
T 2dja_A 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFE 63 (84)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCC
T ss_pred CcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHH
Confidence 3566654456889999999999999986 5553 566666655443
No 25
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=36.14 E-value=19 Score=26.02 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=31.6
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-ccccccchhhcccccccccccCC
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCERCNS 53 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsaN~La~RH~Rv~LCd~C~s 53 (394)
..|..=...+-.+||..|...+|..|-. .-|. .|..++|-+....
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~ 54 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG 54 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence 3566664456789999999999999975 4563 4666666555443
No 26
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=34.26 E-value=20 Score=24.73 Aligned_cols=32 Identities=22% Similarity=0.578 Sum_probs=24.5
Q ss_pred CCCCccCCCCeeEEecCCcccccccccccccc
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHL 34 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~~vHs 34 (394)
..|..=...+-.+||..|...+|..|-..-|.
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~ 38 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK 38 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC
Confidence 45666644567899999999999999765553
No 27
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.14 E-value=23 Score=26.44 Aligned_cols=24 Identities=33% Similarity=0.725 Sum_probs=21.4
Q ss_pred cccccccCCCCceeeccCCcccccc
Q 016166 45 TLLCERCNSQPALVRCAEERVSLCQ 69 (394)
Q Consensus 45 v~LCd~C~s~PA~v~C~~D~asLC~ 69 (394)
..+|.+|.. ++.+.|..|.+..|.
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESS
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeC
Confidence 347999999 999999999999986
No 28
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.79 E-value=13 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.618 Sum_probs=23.4
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-ccc
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVH 33 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~-~vH 33 (394)
.+|..=+ .+-.+||..|.+.+|..|.. .-|
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence 4566664 56889999999999999985 344
No 29
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.74 E-value=34 Score=23.90 Aligned_cols=44 Identities=27% Similarity=0.629 Sum_probs=26.5
Q ss_pred CCCccCCCCeeEEecCCccccccccccccccc--c-chhhcccccccccccC
Q 016166 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA--N-ALSKRHSRTLLCERCN 52 (394)
Q Consensus 4 lCd~C~~a~A~vyC~aD~A~LC~~CD~~vHsa--N-~La~RH~Rv~LCd~C~ 52 (394)
.|.+|+... ..+.-.+|..|++..|.. + +|.......+.|..|.
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcc
Confidence 588888753 234567788999888863 1 2333333445555554
No 30
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=31.57 E-value=44 Score=24.55 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=18.2
Q ss_pred CCCCccCCCCeeEEecCCccccccccccccccc
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA 35 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~~vHsa 35 (394)
..|.+|+.. +.-.+|..|++..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~ 34 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIH 34 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSS
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHccc
Confidence 468888753 4567788899888864
No 31
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=28.50 E-value=22 Score=22.07 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=14.5
Q ss_pred hhHHHHHhHhhhhhccccc
Q 016166 361 RSKAVLRYKEKKKTRLTKE 379 (394)
Q Consensus 361 r~~a~~RYkeKkk~R~~~k 379 (394)
|-..+-||-||+|-|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 3456789999999987654
No 32
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.47 E-value=24 Score=25.41 Aligned_cols=25 Identities=28% Similarity=0.723 Sum_probs=17.8
Q ss_pred CCCCccCCCCeeEEecCCccccccccccccccc
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA 35 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~~vHsa 35 (394)
..|.+|+.. +.-.+|..|++..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~~H~~ 34 (56)
T 2yql_A 10 DFCSVCRKS--------GQLLMCDTCSRVYHLD 34 (56)
T ss_dssp CSCSSSCCS--------SCCEECSSSSCEECSS
T ss_pred CCCccCCCC--------CeEEEcCCCCcceECc
Confidence 468888864 3566678888887763
No 33
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.81 E-value=18 Score=27.15 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=37.6
Q ss_pred eEEecCCc----cccccccccccccccchh----hcccccccccccCCCCc--eeeccCCccccccccccCC
Q 016166 14 IVYCRSDA----ACLCLSCDRNVHLANALS----KRHSRTLLCERCNSQPA--LVRCAEERVSLCQNCDWIG 75 (394)
Q Consensus 14 ~vyC~aD~----A~LC~~CD~~vHsaN~La----~RH~Rv~LCd~C~s~PA--~v~C~~D~asLC~~CD~~~ 75 (394)
.+||+.|= +..|..|+..|.. ..+. .-|..-..|..|...-. ..+-......+|..|....
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 47888883 4579999998873 2222 23666667888876532 2333344445788886443
No 34
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.77 E-value=16 Score=27.58 Aligned_cols=31 Identities=26% Similarity=0.630 Sum_probs=23.2
Q ss_pred cccccCCCC---ceeeccCCccccccccccCCcC
Q 016166 47 LCERCNSQP---ALVRCAEERVSLCQNCDWIGHG 77 (394)
Q Consensus 47 LCd~C~s~P---A~v~C~~D~asLC~~CD~~~Hs 77 (394)
.|-.|...- ..+.|..|+..+|..||.-+|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHh
Confidence 355554432 2467999999999999999985
No 35
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.01 E-value=12 Score=28.27 Aligned_cols=32 Identities=25% Similarity=0.582 Sum_probs=24.4
Q ss_pred CCCccCCCCe---eEEecCCccccccccccccccc
Q 016166 4 MCDFCGDQRS---IVYCRSDAACLCLSCDRNVHLA 35 (394)
Q Consensus 4 lCd~C~~a~A---~vyC~aD~A~LC~~CD~~vHsa 35 (394)
.|-.|...-. +..|......+|.+||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 3667776532 4559999999999999999953
No 36
>2rp5_A Putative uncharacterized protein CEP-1; oligomerization domain, SAM domain, transcription; NMR {Caenorhabditis elegans}
Probab=25.56 E-value=6.1 Score=34.06 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=24.2
Q ss_pred CCCCCcccccccchhhhhcccchhhHhhhhcCCCccccCCC
Q 016166 218 DFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTK 258 (394)
Q Consensus 218 dfnmDDvdL~fENyEElFG~s~~~s~~lfed~Gid~~f~~K 258 (394)
=|+|-|++--||-|+||| |-+||||.=+.|
T Consensus 88 i~TM~Dl~k~Fe~~~~iF-----------E~IGiDssKleK 117 (136)
T 2rp5_A 88 IYTMGDMIREFEKHNDIF-----------ERIGIDSSKLSK 117 (136)
T ss_dssp CCSTTHHHHHHHHTSCHH-----------HHHTCCGGGHHH
T ss_pred ceeHHHHHHHHHHHHHHH-----------HHhcccHHHHHH
Confidence 389999999999999886 567888864443
No 37
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=25.53 E-value=34 Score=23.47 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=19.3
Q ss_pred CCeeEEecCCccccccccc-ccccc
Q 016166 11 QRSIVYCRSDAACLCLSCD-RNVHL 34 (394)
Q Consensus 11 a~A~vyC~aD~A~LC~~CD-~~vHs 34 (394)
.+-.+||..|...+|..|- ..-|.
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~ 39 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHK 39 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTT
T ss_pred ccccEEcCCCCeeEcccccCCCcCC
Confidence 4578999999999999996 34564
No 38
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.67 E-value=57 Score=27.18 Aligned_cols=57 Identities=21% Similarity=0.477 Sum_probs=30.4
Q ss_pred CCCCCCccCCCCeeEEecCCccccccccccccccccchhhcccccccccccCCCCceee-ccCCccccccccc
Q 016166 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVR-CAEERVSLCQNCD 72 (394)
Q Consensus 1 M~~lCd~C~~a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~Rv~LCd~C~s~PA~v~-C~~D~asLC~~CD 72 (394)
|...|..|+..- .+ .+....|..|+.. =.+..+|+-|+..--.+. |-+ .-.+|+.|.
T Consensus 31 M~~~CP~Cq~eL--~~--~g~~~hC~~C~~~----------f~~~a~CPdC~q~LevLkACGA-vdYFC~~ch 88 (101)
T 2jne_A 31 MELHCPQCQHVL--DQ--DNGHARCRSCGEF----------IEMKALCPDCHQPLQVLKACGA-VDYFCQHGH 88 (101)
T ss_dssp CCCBCSSSCSBE--EE--ETTEEEETTTCCE----------EEEEEECTTTCSBCEEEEETTE-EEEEETTTT
T ss_pred ccccCccCCCcc--ee--cCCEEECccccch----------hhccccCcchhhHHHHHHHhcC-cchhhccCC
Confidence 667788888642 22 2334457777753 334567777765433322 211 235666664
No 39
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.78 E-value=19 Score=26.92 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=37.5
Q ss_pred eEEecCCc----cccccccccccccccchh-----hcccccccccccCCCCce-eeccCCccccccccccC
Q 016166 14 IVYCRSDA----ACLCLSCDRNVHLANALS-----KRHSRTLLCERCNSQPAL-VRCAEERVSLCQNCDWI 74 (394)
Q Consensus 14 ~vyC~aD~----A~LC~~CD~~vHsaN~La-----~RH~Rv~LCd~C~s~PA~-v~C~~D~asLC~~CD~~ 74 (394)
.+||+.|- +..|..|...|.....+. .-|..-..|..|...-.. -+-..+...+|..|-..
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 73 (82)
T 1x63_A 3 SGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHET 73 (82)
T ss_dssp SCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHH
T ss_pred CcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHH
Confidence 36777773 557999999998544322 236666678888654321 23345666777776543
No 40
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.50 E-value=50 Score=24.58 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=39.6
Q ss_pred eEEecCCc----cccccccccccccccchh-----hcccccccccccCCCCce-eeccCCccccccccccCC
Q 016166 14 IVYCRSDA----ACLCLSCDRNVHLANALS-----KRHSRTLLCERCNSQPAL-VRCAEERVSLCQNCDWIG 75 (394)
Q Consensus 14 ~vyC~aD~----A~LC~~CD~~vHsaN~La-----~RH~Rv~LCd~C~s~PA~-v~C~~D~asLC~~CD~~~ 75 (394)
.+||+.|- +..|..|...|.....+. .-|..-..|..|...-.. -|-..+...+|..|-...
T Consensus 3 ~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 3 SGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp CCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred ceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 36788773 456999999998322221 246666778888765322 244566778888886543
No 41
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=23.10 E-value=70 Score=26.46 Aligned_cols=61 Identities=26% Similarity=0.560 Sum_probs=37.0
Q ss_pred CCCCccCCCCeeEEecCCcccccc--cccccccccc-chhhcccccccc-----cccCCCCceeeccCCccccccccc
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCL--SCDRNVHLAN-ALSKRHSRTLLC-----ERCNSQPALVRCAEERVSLCQNCD 72 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~--~CD~~vHsaN-~La~RH~Rv~LC-----d~C~s~PA~v~C~~D~asLC~~CD 72 (394)
..|..|+.. ....+|. .|++..|..= .|.....-.+.| ..|+. ++.++|..|..++|..|-
T Consensus 16 ~~C~~C~~~--------G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k-~~~~~C~~Cp~sfC~~c~ 84 (107)
T 4gne_A 16 DYCFQCGDG--------GELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSS-AAVSFCEFCPHSFCKDHE 84 (107)
T ss_dssp SSCTTTCCC--------SEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCS-BCCEECSSSSCEECTTTC
T ss_pred CCCCcCCCC--------CcEeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCC-CCCcCcCCCCcchhhhcc
Confidence 457788753 3345566 6887777531 122222233444 45654 456889999999998886
No 42
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=22.45 E-value=34 Score=25.50 Aligned_cols=31 Identities=26% Similarity=0.735 Sum_probs=24.1
Q ss_pred CCCCccCCCCeeEEecCCcccccccccccccc
Q 016166 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHL 34 (394)
Q Consensus 3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~~vHs 34 (394)
..|..=+ .+-.+||..|...+|..|-..-|.
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~ 49 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK 49 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC
Confidence 4566664 578899999999999999765553
No 43
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.80 E-value=20 Score=26.48 Aligned_cols=57 Identities=16% Similarity=0.334 Sum_probs=32.3
Q ss_pred EEecCCc----ccccccccccccc----ccchh----hcccccccccccCCCCce-eeccCCcccccccc
Q 016166 15 VYCRSDA----ACLCLSCDRNVHL----ANALS----KRHSRTLLCERCNSQPAL-VRCAEERVSLCQNC 71 (394)
Q Consensus 15 vyC~aD~----A~LC~~CD~~vHs----aN~La----~RH~Rv~LCd~C~s~PA~-v~C~~D~asLC~~C 71 (394)
+||+.|- +..|..|...|.. +..+. .-|..-..|..|...-.. -|-..+...+|..|
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~c 73 (77)
T 2egq_A 4 GSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDC 73 (77)
T ss_dssp SCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHH
T ss_pred eEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHH
Confidence 5777773 5679999999984 22221 235555667777644221 12244455555554
Done!