BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016168
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 271 bits (693), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 152/299 (50%), Positives = 190/299 (63%), Gaps = 16/299 (5%)
Query: 94 FAVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEG 153
F DFL GGV+AA+SKTA APIERVKLL+Q Q K + YKGI DC R K++G
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVVRIPKEQG 65
Query: 154 FASLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNLXXXXXXXXX 212
F S WRGN ANVIRYFPTQALNFAFKD +K++F DR +W++FAGNL
Sbjct: 66 FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGAT 125
Query: 213 XLFFVYSLDYARTRLANDAKAAKHGGERQFNGLIDVYRKTLKTDGIAGLYRGFNISCVGI 272
L FVY LD+ARTRLA D K +R+F GL + K K+DG+ GLY+GFN+S GI
Sbjct: 126 SLCFVYPLDFARTRLAAD--VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183
Query: 273 IVYRGLYFGMYDSLKPVILTGKLQDSFFASFALGWVI----TNGAGLASYPIDTVRRRMM 328
I+YR YFG+YD+ K G L D + W+I T AGL SYP DTVRRRMM
Sbjct: 184 IIYRAAYFGVYDTAK-----GMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238
Query: 329 MTSGEA---VKYNSSLDAFSQILKNEGAKSLFKGAGANILRAIAGAGVLAGYDKLQMIV 384
M SG + Y ++D + +I K+EG K+ FKGA +N+LR + GA VL YD+++ V
Sbjct: 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 121/283 (42%), Gaps = 26/283 (9%)
Query: 94 FAVDFLMGGVSAAVSKTAAAPIE--RVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKD 151
V FL G +A ++ P++ +V+L IQ + + + S Y+G+ ++
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 152 EGFASLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLXXXXXXXX 211
EG SL+ G A + R ++ D K+ + + G L
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG----IGSRLLAGSTTGA 116
Query: 212 XXLFFVYSLDYARTRLANDAKAAKHGGERQFNGLIDVYRKTLKTDGIAGLYRGFN----- 266
+ D + R A+A GG R++ ++ Y+ + +GI GL++G +
Sbjct: 117 LAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVAR 173
Query: 267 ---ISCVGIIVYRGLYFGMYDSLKPVILTGKLQDSFFASFALGWVITNGAGLASYPIDTV 323
++C ++ Y + + LK ++T L F ++F G+ T + + P+D V
Sbjct: 174 NAIVNCAELVTYDLIKDTL---LKANLMTDDLPCHFTSAFGAGFCTT----VIASPVDVV 226
Query: 324 RRRMMMTSGEAVKYNSSLDAFSQILKNEGAKSLFKGAGANILR 366
+ R M ++ +Y+S+ +L+ EG ++ +KG + LR
Sbjct: 227 KTRYMNSA--LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 6/177 (3%)
Query: 215 FFVYSLDYARTRLANDAKA---AKHGGERQFNGLIDVYRKTLKTDGIAGLYRGFNISCVG 271
+ LD A+ RL ++ + Q+ G++ ++T+G LY G
Sbjct: 17 LITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQR 76
Query: 272 IIVYRGLYFGMYDSLKPVILTGKLQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTS 331
+ + + G+YDS+K G + G A + P D V+ R +
Sbjct: 77 QMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA 136
Query: 332 --GEAVKYNSSLDAFSQILKNEGAKSLFKGAGANILR-AIAGAGVLAGYDKLQMIVL 385
G +Y S+++A+ I + EG + L+KG N+ R AI L YD ++ +L
Sbjct: 137 RAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL 193
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 20/203 (9%)
Query: 92 AGFAVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKD 151
AG L G + A++ A P + VK+ Q Q R Y+ + + ++
Sbjct: 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRR----YQSTVEAYKTIARE 157
Query: 152 EGFASLWRGNTANVIRYFPTQALNFAFKDYFKRLF---NFKKDRDGYWKWFAGNLXXXXX 208
EG LW+G + NV R D K N D +
Sbjct: 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDD------LPCHFTSAFG 211
Query: 209 XXXXXLFFVYSLDYARTRLANDAKAAKHGGERQFNGLIDVYRKTLKTDGIAGLYRGFNIS 268
+D +TR N A Q++ L+ +G Y+GF S
Sbjct: 212 AGFCTTVIASPVDVVKTRYMNSALG-------QYHSAGHCALTMLRKEGPRAFYKGFMPS 264
Query: 269 CVGIIVYRGLYFGMYDSLKPVIL 291
+ + + + F Y+ LK ++
Sbjct: 265 FLRLGSWNVVMFVTYEQLKRALM 287
>pdb|2RKC|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
Length = 462
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 261 LYRGFNISCVGIIVYRGLYFGMYDSLKPVILTGK---LQDSFFASFALGWVITNGAG 314
L RG+N+S + + +G+Y G Y KP++ + + Q S + F +G + G G
Sbjct: 55 LGRGYNVSSIVTMTSQGMYGGTYLVEKPILSSKRSELSQLSMYRVFEVGVIRNPGLG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,366,883
Number of Sequences: 62578
Number of extensions: 459154
Number of successful extensions: 896
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 6
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)