Query 016168
Match_columns 394
No_of_seqs 328 out of 2780
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:03:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 5.3E-58 1.8E-62 425.3 27.6 288 92-384 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.5E-57 8.5E-62 421.7 24.1 281 97-386 4-288 (303)
3 2lck_A Mitochondrial uncouplin 100.0 9E-52 3.1E-56 384.3 4.6 268 5-291 18-287 (303)
4 1okc_A ADP, ATP carrier protei 100.0 3.9E-51 1.3E-55 379.1 7.2 272 5-290 24-297 (297)
5 3f2e_A SIRV coat protein; four 30.6 21 0.00073 24.3 1.5 35 334-368 5-43 (100)
6 2acm_A Mucin-1; auto-catalytic 23.5 22 0.00076 22.8 0.6 20 139-158 40-59 (66)
7 4b19_A PEPA1; toxin, toxin apo 14.1 74 0.0025 17.4 1.2 22 200-221 4-25 (30)
8 3vjj_A P9-1; 3.00A {Rice black 14.0 89 0.0031 27.1 2.3 33 313-352 275-307 (368)
9 3vjj_A P9-1; 3.00A {Rice black 12.4 1.3E+02 0.0045 26.1 2.8 49 211-274 273-321 (368)
10 3tgu_G UQCRQ, mitochondrial ub 10.3 2.2E+02 0.0076 19.6 3.0 34 258-291 34-67 (81)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.3e-58 Score=425.26 Aligned_cols=288 Identities=52% Similarity=0.869 Sum_probs=243.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccHHHHHHHHhcchhhhhhcCCCCCCCChhHHHHHHhhccCcccccccchHhHHhHhhh
Q 016168 92 AGFAVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFASLWRGNTANVIRYFPT 171 (394)
Q Consensus 92 ~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~Q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~ 171 (394)
.+.+.++++|++||+++.++++|+|+||+|+|++..... ......|+++++++++|+++||++|||||+.+++++++|.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ-ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS-CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc-cccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 467789999999999999999999999999999864211 1112358999999999999999999999999999999999
Q ss_pred hhhhHhhHHHHHHHhccC-CCCCChhhHHHhHhhHhhHHhHHHHHhhchHHHHHHHHhcCcchhhcCCCcccCcHHHHHH
Q 016168 172 QALNFAFKDYFKRLFNFK-KDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDAKAAKHGGERQFNGLIDVYR 250 (394)
Q Consensus 172 ~~~~f~~y~~~k~~~~~~-~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pldvvktr~q~~~~~~~~~~~~~~~~~~~~~~ 250 (394)
++++|.+||.+|+.+... .............+++|++||++++++++|+|+||+|+|++... .+....|.+++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~ 161 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCIT 161 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--STTTCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC--CCcCcCCCCHHHHHH
Confidence 999999999999954332 22222223456789999999999999999999999999998531 122457899999999
Q ss_pred HHHHhhCcccccccchHHHHhHHHHHhhHHhhHHhhHHHHhcCCCCchhHHHHHHHHHHHHhhhhccchHHHHHHHhccc
Q 016168 251 KTLKTDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVILTGKLQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMT 330 (394)
Q Consensus 251 ~i~~~~G~~g~y~G~~~~~~r~~~~~~i~~~~ye~~k~~l~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldviktr~q~~ 330 (394)
+|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+. .+.+....+++|++||++++++++|+||||+|+|++
T Consensus 162 ~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~ 240 (297)
T 1okc_A 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240 (297)
T ss_dssp HHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999987543 234567789999999999999999999999999987
Q ss_pred CCC---CCCCCCHHHHHHHHHHhhChhhcccchHHHHHHHhhhhHH-HHHHHHHHHHH
Q 016168 331 SGE---AVKYNSSLDAFSQILKNEGAKSLFKGAGANILRAIAGAGV-LAGYDKLQMIV 384 (394)
Q Consensus 331 ~~~---~~~~~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~i-~~~ye~~~~~~ 384 (394)
... ...|.++++|+++|+++||++|||||+.|+++|..+ +++ |.+||.+|+++
T Consensus 241 ~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~-~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHH-HHHHHHHHHTC----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhcc-ceeeehHHHHHHhhC
Confidence 532 346899999999999999999999999999999754 555 99999998753
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.5e-57 Score=421.69 Aligned_cols=281 Identities=22% Similarity=0.377 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcchhhhhh--cCCCCCCCChhHHHHHHhhccCcccccccchHhHHhHhhhhhh
Q 016168 97 DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKA--GRLSEPYKGIGDCFGRTIKDEGFASLWRGNTANVIRYFPTQAL 174 (394)
Q Consensus 97 ~~~ag~~ag~~~~~~~~Pld~ik~r~Q~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~ 174 (394)
+++||++||+++.++++|+|+||+|+|++...... ......|+++++++++|+++||++|||||+.+++++.+|.+++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999998642110 0112458999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHhccCCCCCChhhHHHhHhhHhhHHhHHHHHhhchHHHHHHHHhcCcchhhcCCCcccCcHHHHHHHHHH
Q 016168 175 NFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDAKAAKHGGERQFNGLIDVYRKTLK 254 (394)
Q Consensus 175 ~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pldvvktr~q~~~~~~~~~~~~~~~~~~~~~~~i~~ 254 (394)
+|.+||.+|+.+.+..+. .+....+++|++||++++++++|+|+||+|+|++... .....|.++++++++|++
T Consensus 84 ~f~~ye~~k~~~~~~~~~----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~~ 156 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSEH----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIAR 156 (303)
T ss_dssp TTTHHHHHHHHHSCCCSS----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcC----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHHH
Confidence 999999999988754221 2235689999999999999999999999999998641 234578999999999999
Q ss_pred hhCcccccccchHHHHhHHHHHhhHHhhHHhhHHHHhcCC-CCchhHHHHHHHHHHHHhhhhccchHHHHHHHhcccCCC
Q 016168 255 TDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVILTGK-LQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGE 333 (394)
Q Consensus 255 ~~G~~g~y~G~~~~~~r~~~~~~i~~~~ye~~k~~l~~~~-~~~~~~~~~~~g~~ag~~~~~~t~Pldviktr~q~~~~~ 333 (394)
+||++|||||+.|+++|.+|.++++|.+||.+|+.+.+.. .+++....+++|++||++++++++|+||||+|+|.+..
T Consensus 157 ~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~- 235 (303)
T 2lck_A 157 EEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL- 235 (303)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-
T ss_pred hcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-
Confidence 9999999999999999999999999999999999986543 24566788999999999999999999999999998753
Q ss_pred CCCCCCHHHHHHHHHHhhChhhcccchHHHHHHHhhhhHH-HHHHHHHHHHHcC
Q 016168 334 AVKYNSSLDAFSQILKNEGAKSLFKGAGANILRAIAGAGV-LAGYDKLQMIVLG 386 (394)
Q Consensus 334 ~~~~~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~i-~~~ye~~~~~~~~ 386 (394)
..|.++++|+++|+++||++|||||+.|+++|.+|.+++ |.+||.+|+.+.+
T Consensus 236 -~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 236 -GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp -SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred -cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999998 9999999987643
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9e-52 Score=384.27 Aligned_cols=268 Identities=18% Similarity=0.220 Sum_probs=232.5
Q ss_pred CCCCchhhhhcchhhhhhccc--hhcccccccCcCCCCCCcccccccccccCcccCCCccccccccCCcccccCCCCccc
Q 016168 5 HQQPSVMHKVTGQLYLKSTLS--QDIVQNRYAGFQNPAALPQRHFAYGNYSNAAFQYPLAQTCRASSDLSLIASTASPVF 82 (394)
Q Consensus 5 ~~~p~~~~k~~~q~~~~~~~s--~~~~~~y~g~~~~~~~i~~~eG~~glyr~~G~~~~l~~~~~~~~~~f~~y~~~~~~~ 82 (394)
.-||+|++|+|.|.+...... .....+|+|+++++++|+++||++|||| |+.+++++..+.++++|..|+..++.+
T Consensus 18 ~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyr--G~~~~l~~~~~~~~i~f~~ye~~k~~~ 95 (303)
T 2lck_A 18 ITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYN--GLVAGLQRQMSFASVRIGLYDSVKQFY 95 (303)
T ss_dssp TTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHS--SHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999985432110 0113459999999999999999999999 999999999999999999999998877
Q ss_pred cCCCCCcCchhhHHHHHHHHHHHHHHHHhhccHHHHHHHHhcchhhhhhcCCCCCCCChhHHHHHHhhccCcccccccch
Q 016168 83 VQAPSEKGFAGFAVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFASLWRGNT 162 (394)
Q Consensus 83 ~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~Q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~ 162 (394)
..... ..+....+++|++||+++.++++|+|+||+|+|++... .....|+++++++++|+++||++|||||+.
T Consensus 96 ~~~~~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~ 168 (303)
T 2lck_A 96 TKGSE---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA----GGGRRYQSTVEAYKTIAREEGIRGLWKGTS 168 (303)
T ss_dssp SCCCS---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC----CCSSSCCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hcCCc---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc----CCCCCCCCHHHHHHHHHHhcChhhhhCCcc
Confidence 64422 24567889999999999999999999999999998532 122368999999999999999999999999
Q ss_pred HhHHhHhhhhhhhHhhHHHHHHHhccCCCCCChhhHHHhHhhHhhHHhHHHHHhhchHHHHHHHHhcCcchhhcCCCccc
Q 016168 163 ANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDAKAAKHGGERQF 242 (394)
Q Consensus 163 ~~~~~~~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pldvvktr~q~~~~~~~~~~~~~~ 242 (394)
+++++++|.++++|.+||.+|+.+.+...... .....+++|++||++++++++|+|+||+|||++.. ..|
T Consensus 169 ~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~---~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-------~~y 238 (303)
T 2lck_A 169 PNVARNAIVNCAELVTYDLIKDTLLKANLMTD---DLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-------GQY 238 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-------SSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---chHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-------ccc
Confidence 99999999999999999999998865432221 23468999999999999999999999999999753 358
Q ss_pred CcHHHHHHHHHHhhCcccccccchHHHHhHHHHHhhHHhhHHhhHHHHh
Q 016168 243 NGLIDVYRKTLKTDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVIL 291 (394)
Q Consensus 243 ~~~~~~~~~i~~~~G~~g~y~G~~~~~~r~~~~~~i~~~~ye~~k~~l~ 291 (394)
.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.
T Consensus 239 ~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 239 HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp CSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.9e-51 Score=379.09 Aligned_cols=272 Identities=16% Similarity=0.202 Sum_probs=224.8
Q ss_pred CCCCchhhhhcchhhhhhccchhcccccccCcCCCCCCcccccccccccCcccCCCccccccccCCcccccCCCCccc-c
Q 016168 5 HQQPSVMHKVTGQLYLKSTLSQDIVQNRYAGFQNPAALPQRHFAYGNYSNAAFQYPLAQTCRASSDLSLIASTASPVF-V 83 (394)
Q Consensus 5 ~~~p~~~~k~~~q~~~~~~~s~~~~~~y~g~~~~~~~i~~~eG~~glyr~~G~~~~l~~~~~~~~~~f~~y~~~~~~~-~ 83 (394)
.-||+|++|+|.|.+....- .....+|+|++||+++|+++||++|||| |+.+++++..+.++++|+.|+..++.+ .
T Consensus 24 ~~~Pld~vKtrlQ~~~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyr--G~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 100 (297)
T 1okc_A 24 AVAPIERVKLLLQVQHASKQ-ISAEKQYKGIIDCVVRIPKEQGFLSFWR--GNLANVIRYFPTQALNFAFKDKYKQIFLG 100 (297)
T ss_dssp HTHHHHHHHHHHHHGGGCSS-CCGGGSCCSHHHHHHHHHHHHCGGGGGT--TTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHhcccccc-cccccccccHHHHHHHHHhccchhheec--ccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35899999999999653221 1123459999999999999999999999 999999999999999999999988743 3
Q ss_pred CCCCCcC-chhhHHHHHHHHHHHHHHHHhhccHHHHHHHHhcchhhhhhcCCCCCCCChhHHHHHHhhccCcccccccch
Q 016168 84 QAPSEKG-FAGFAVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFASLWRGNT 162 (394)
Q Consensus 84 ~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~Q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~ 162 (394)
....+.. ..+....+++|++||+++.++++|+|+||+|+|++.... .....|+++++++++|+++||++|||||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~ 177 (297)
T 1okc_A 101 GVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG---AAQREFTGLGNCITKIFKSDGLRGLYQGFN 177 (297)
T ss_dssp TCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS---TTTCSCSSHHHHHHHHHHHHCHHHHTTTHH
T ss_pred ccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC---CcCcCCCCHHHHHHHHHHhccHHHhcCCch
Confidence 2222222 234567899999999999999999999999999975311 112458999999999999999999999999
Q ss_pred HhHHhHhhhhhhhHhhHHHHHHHhccCCCCCChhhHHHhHhhHhhHHhHHHHHhhchHHHHHHHHhcCcchhhcCCCccc
Q 016168 163 ANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDAKAAKHGGERQF 242 (394)
Q Consensus 163 ~~~~~~~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pldvvktr~q~~~~~~~~~~~~~~ 242 (394)
+++++++|.++++|.+||.+|+.+.+..+ . +....+++|++||++++++++|+|+||+|||++.... .....|
T Consensus 178 ~~l~~~~~~~~~~f~~ye~~k~~~~~~~~-~----~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~--~~~~~y 250 (297)
T 1okc_A 178 VSVQGIIIYRAAYFGVYDTAKGMLPDPKN-V----HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK--GADIMY 250 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCGGGC-S----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC--GGGCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC-c----cHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC--CCCCCC
Confidence 99999999999999999999997754322 1 2356789999999999999999999999999875311 123579
Q ss_pred CcHHHHHHHHHHhhCcccccccchHHHHhHHHHHhhHHhhHHhhHHHH
Q 016168 243 NGLIDVYRKTLKTDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVI 290 (394)
Q Consensus 243 ~~~~~~~~~i~~~~G~~g~y~G~~~~~~r~~~~~~i~~~~ye~~k~~l 290 (394)
.++++|+++|+++||++|||||+.|+++|. +.+++.|.+||.+|+++
T Consensus 251 ~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 251 TGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp SSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 999999999999999999999999999996 57899999999998753
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=30.55 E-value=21 Score=24.26 Aligned_cols=35 Identities=23% Similarity=0.544 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHHhhCh----hhcccchHHHHHHHh
Q 016168 334 AVKYNSSLDAFSQILKNEGA----KSLFKGAGANILRAI 368 (394)
Q Consensus 334 ~~~~~~~~~~~~~i~~~eG~----~gly~G~~~~~~~~~ 368 (394)
.+++.++-.-+..++.+.|+ |+.|.|++..+.|..
T Consensus 5 vpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 5 VPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp ---CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 45677777777788888886 679999999988865
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=23.50 E-value=22 Score=22.85 Aligned_cols=20 Identities=30% Similarity=0.477 Sum_probs=17.5
Q ss_pred CChhHHHHHHhhccCccccc
Q 016168 139 KGIGDCFGRTIKDEGFASLW 158 (394)
Q Consensus 139 ~~~~~~~~~i~~~~G~~gly 158 (394)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788899999999999986
No 7
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=14.14 E-value=74 Score=17.37 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=16.8
Q ss_pred HhHhhHhhHHhHHHHHhhchHH
Q 016168 200 AGNLASGGAAGASSLFFVYSLD 221 (394)
Q Consensus 200 ~~~~~ag~~ag~~~~~~~~Pld 221 (394)
+.++++-.++|++-+++++-++
T Consensus 4 fv~iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888776
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=14.03 E-value=89 Score=27.09 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=24.8
Q ss_pred hhhccchHHHHHHHhcccCCCCCCCCCHHHHHHHHHHhhC
Q 016168 313 AGLASYPIDTVRRRMMMTSGEAVKYNSSLDAFSQILKNEG 352 (394)
Q Consensus 313 ~~~~t~Pldviktr~q~~~~~~~~~~~~~~~~~~i~~~eG 352 (394)
+++=-||||.+|-.++.- .++...+++.+.++|
T Consensus 275 aTFdnypfdllRfqL~Sl-------istp~~I~e~i~K~G 307 (368)
T 3vjj_A 275 ATFDNYPFDLLRFQLSSL-------ISTPALIREKIAKEG 307 (368)
T ss_dssp HHCTTCBHHHHHHHCSSC-------CCCCHHHHHHHHHSC
T ss_pred ecCCCCCHHHHHHHhhhh-------ccChHHHHHHHHhcC
Confidence 556679999998777643 244477889999998
No 9
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=12.36 E-value=1.3e+02 Score=26.09 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHHhhchHHHHHHHHhcCcchhhcCCCcccCcHHHHHHHHHHhhCcccccccchHHHHhHHH
Q 016168 211 ASSLFFVYSLDYARTRLANDAKAAKHGGERQFNGLIDVYRKTLKTDGIAGLYRGFNISCVGIIV 274 (394)
Q Consensus 211 ~~~~~~~~Pldvvktr~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~y~G~~~~~~r~~~ 274 (394)
.++++=-+|||.+|-.++..-. .-..+.+.+.++|+ |+-+...-+|..+
T Consensus 273 qLaTFdnypfdllRfqL~Slis------------tp~~I~e~i~K~GL---Fk~it~~~~rg~~ 321 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLIS------------TPALIREKIAKEGL---FKIITSNTLRGAS 321 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCCC------------CCHHHHHHHHHSCS---EEECC--------
T ss_pred eeecCCCCCHHHHHHHhhhhcc------------ChHHHHHHHHhcCc---eEEEecccccCCc
Confidence 4566778999999887765433 23667788888764 5555554444443
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=10.31 E-value=2.2e+02 Score=19.60 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=24.9
Q ss_pred cccccccchHHHHhHHHHHhhHHhhHHhhHHHHh
Q 016168 258 IAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVIL 291 (394)
Q Consensus 258 ~~g~y~G~~~~~~r~~~~~~i~~~~ye~~k~~l~ 291 (394)
+...+|-+.-.++..+|...+.+.+|+..++...
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 3334444566778889999999999998887654
Done!