BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016169
         (394 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P45694|TKT_BACSU Transketolase OS=Bacillus subtilis (strain 168) GN=tkt PE=3 SV=2
          Length = 667

 Score = 38.1 bits (87), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 21/169 (12%)

Query: 119 SFSTSVETRVNDGNFERIYVQNGLNVKPL--VVERIDKDEN--IVGQEESCVEVNDDEKV 174
           SFS +V+ R    N+E +YV++G N++ L   +E+  ++E    + + ++ +      + 
Sbjct: 197 SFSENVKQRFEAMNWEVLYVEDGNNIEELTAAIEKARQNEKKPTLIEVKTTIGFGSPNRA 256

Query: 175 GKDNLEGVRTKREETEIEKEAWRLLQEAVVTYCESPIG---TVAANDPGDKQPLNYDQVF 231
           G   + G    +EE+++ KEA+    E    Y  S +     VA  + G+K+   ++  F
Sbjct: 257 GTSGVHGAPLGKEESKLTKEAYAWTYEEDF-YVPSEVYEHFAVAVKESGEKKEQEWNAQF 315

Query: 232 I--RDFVPS-ALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGL 277
              ++  P  A    L  +GE+ ++          W++ V  Y  G  L
Sbjct: 316 AKYKEVYPELAEQLELAIKGELPKD----------WDQEVPVYEKGSSL 354


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,742,216
Number of Sequences: 539616
Number of extensions: 6319001
Number of successful extensions: 14456
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 14447
Number of HSP's gapped (non-prelim): 19
length of query: 394
length of database: 191,569,459
effective HSP length: 119
effective length of query: 275
effective length of database: 127,355,155
effective search space: 35022667625
effective search space used: 35022667625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)