Query 016169
Match_columns 394
No_of_seqs 82 out of 111
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 04:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12899 Glyco_hydro_100: Alka 100.0 1E-100 3E-105 757.7 14.6 195 194-393 1-195 (436)
2 PLN03005 beta-fructofuranosida 100.0 2.6E-93 5.6E-98 718.5 16.9 207 184-393 77-283 (550)
3 PLN02973 beta-fructofuranosida 100.0 3E-92 6.6E-97 712.2 14.9 205 185-393 100-304 (571)
4 PLN02703 beta-fructofuranosida 100.0 1.9E-90 4.1E-95 702.8 16.2 213 181-393 122-336 (618)
5 TIGR01561 gde_arch glycogen de 99.2 5.5E-11 1.2E-15 123.2 7.7 134 227-393 290-436 (575)
6 PF06202 GDE_C: Amylo-alpha-1, 99.1 2.1E-10 4.6E-15 111.4 8.6 134 227-393 28-176 (370)
7 COG3408 GDB1 Glycogen debranch 98.9 3E-09 6.5E-14 111.6 8.0 135 227-392 282-426 (641)
8 TIGR01531 glyc_debranch glycog 98.3 1.1E-06 2.4E-11 99.3 7.8 147 213-393 1022-1233(1464)
9 TIGR01577 oligosac_amyl oligos 98.2 2.2E-05 4.8E-10 81.1 12.5 161 194-393 253-423 (616)
10 PF00723 Glyco_hydro_15: Glyco 93.0 0.38 8.2E-06 48.0 7.9 150 195-360 3-174 (448)
11 PF05592 Bac_rhamnosid: Bacter 92.1 0.23 5.1E-06 49.7 5.2 160 188-393 115-284 (509)
12 PF04685 DUF608: Protein of un 92.1 0.065 1.4E-06 53.4 1.2 77 312-393 97-176 (365)
13 TIGR01535 glucan_glucosid gluc 91.7 1.9 4.1E-05 46.7 11.6 55 209-263 268-328 (648)
14 COG3387 SGA1 Glucoamylase and 83.1 2 4.4E-05 46.1 5.4 56 210-265 261-320 (612)
15 COG4759 Uncharacterized protei 45.6 13 0.00029 37.8 2.0 41 346-388 109-158 (316)
16 TIGR01507 hopene_cyclase squal 43.5 2.3E+02 0.0051 30.9 10.9 145 187-370 333-490 (635)
17 KOG3625 Alpha amylase [Carbohy 39.0 14 0.0003 43.0 1.1 75 224-329 1076-1151(1521)
18 PRK10137 alpha-glucosidase; Pr 31.1 3E+02 0.0065 31.4 9.6 136 198-352 309-457 (786)
19 PF06824 DUF1237: Protein of u 29.3 36 0.00077 35.9 2.1 136 207-357 29-170 (424)
20 PF07849 DUF1641: Protein of u 28.1 44 0.00095 24.4 1.8 15 337-351 21-35 (42)
21 TIGR01354 cyt_deam_tetra cytid 26.7 81 0.0018 27.2 3.5 32 189-220 1-32 (127)
22 cd00044 CysPc Calpains, domain 25.3 1.4E+02 0.003 29.0 5.1 102 227-348 74-179 (315)
23 PF01315 Ald_Xan_dh_C: Aldehyd 23.3 46 0.00099 28.0 1.3 23 198-220 72-94 (111)
24 PF13249 Prenyltrans_2: Prenyl 21.4 66 0.0014 25.1 1.8 21 338-370 91-111 (113)
25 TIGR01787 squalene_cyclas squa 21.2 5.8E+02 0.012 27.8 9.2 150 187-370 316-479 (621)
26 PF09776 Mitoc_L55: Mitochondr 20.9 49 0.0011 29.5 1.1 13 358-370 43-56 (116)
27 PRK09979 putative rho operon l 20.8 45 0.00097 23.9 0.7 16 7-22 6-21 (33)
No 1
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=100.00 E-value=1.4e-100 Score=757.70 Aligned_cols=195 Identities=71% Similarity=1.191 Sum_probs=191.0
Q ss_pred HHHHHHHHhhccccCccceEEecCCCCCCCCCCCcceeeccchHHHHHHHhcCcHHHHHHHHHHhhccccccccccccCC
Q 016169 194 EAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSP 273 (394)
Q Consensus 194 eAwelL~~s~V~y~g~PvGTVAA~D~~~~~aLNYdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~vd~~~~ 273 (394)
||||+||+|+|+|+|+|||||||.||+.+++|||||||+||||||||||||+||+|||||||++||+||||||+||||++
T Consensus 1 ~a~~~l~~s~v~~~g~pvGtvAa~d~~~~~~lNY~qvF~RDfvps~l~fL~~g~~eIVrnFL~~tl~Lq~~~~~~d~~~~ 80 (436)
T PF12899_consen 1 EAWELLERSIVYYQGQPVGTVAALDPSAEEALNYDQVFVRDFVPSALAFLMKGEPEIVRNFLLETLQLQSWEKQVDCFKP 80 (436)
T ss_pred ChHHHHhhheEeeCCceeeeeeecCCcccccccccceEeecChHHHHHHHHcCCHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 69999999999999999999999999877899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceeEEeeccCCCCCcccccccCCCCcccccccccCCccHHHHHHHHHhhccCCcccccchhhHHHHHHHHHhhh
Q 016169 274 GQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCL 353 (394)
Q Consensus 274 g~GvmPASFkV~~~p~~~~~~eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~sl~~~pevQrGIrlIL~LcL 353 (394)
|+|+|||||||++++ ++|+|+|||||+|||||||||||||||||||||+|+|||++|+++||||+||||||+|||
T Consensus 81 g~G~mPaSFkv~~~~-----~~e~l~aDfGe~AIgRv~pVDs~~WWiillraY~k~tgD~s~~~~~~~Q~gi~liL~lcL 155 (436)
T PF12899_consen 81 GRGVMPASFKVLHEN-----EEETLIADFGERAIGRVAPVDSGLWWIILLRAYVKATGDYSLAESPEVQRGIRLILDLCL 155 (436)
T ss_pred CCCcccceEEEecCC-----CCceEecCcchhhhccccCcccccHHHHHHHHHHHHhcchhhhhcHHHHHHHHHHHHHHc
Confidence 999999999999754 679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceeeecCCccccccccccCCCchhhhhhhhhcc
Q 016169 354 ADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQVSLICFF 393 (394)
Q Consensus 354 ~~~Fd~fPtLlVpDgs~MIDRrMgV~GyPLEIQaLfy~A~ 393 (394)
+++||||||||||||||||||||||||||||||||||+|.
T Consensus 156 ~~~Fd~~PtLlvpDg~~MiDRrMgv~G~PlEiQ~Lf~~aL 195 (436)
T PF12899_consen 156 ADGFDMFPTLLVPDGACMIDRRMGVYGHPLEIQALFYMAL 195 (436)
T ss_pred ccccCCCceEEecCCceeecccccccCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999984
No 2
>PLN03005 beta-fructofuranosidase
Probab=100.00 E-value=2.6e-93 Score=718.51 Aligned_cols=207 Identities=57% Similarity=0.971 Sum_probs=199.9
Q ss_pred ccccccHHHHHHHHHHHHhhccccCccceEEecCCCCCCCCCCCcceeeccchHHHHHHHhcCcHHHHHHHHHHhhcccc
Q 016169 184 TKREETEIEKEAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQS 263 (394)
Q Consensus 184 ~~~~~~~~~~eAwelL~~s~V~y~g~PvGTVAA~D~~~~~aLNYdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs 263 (394)
..+++++++++||++||+|+|+|||+|||||||.|+...+++||+|||+|||||||||||++||+|||||||++||+||+
T Consensus 77 ~~~~~~~~~~~a~~~l~~s~v~~~g~pvGtvAA~d~~~~~~lNY~qvF~RDfvpsaLafLl~Ge~eIVrnFl~~~L~Lq~ 156 (550)
T PLN03005 77 NSFEPHPMMAEAWEALRRSMVFFRGQPVGTLAAVDNTTDEVLNYDQVFVRDFVPSALAFLMNGEPDIVKHFLLKTLQLQG 156 (550)
T ss_pred CCCCCCcHHHHHHHHHHhheEEECCccceeeeecCCccccccCCCceeecccHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999999999999865468999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCcccceeEEeeccCCCCCcccccccCCCCcccccccccCCccHHHHHHHHHhhccCCcccccchhhHH
Q 016169 264 WEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQT 343 (394)
Q Consensus 264 ~ek~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~sl~~~pevQr 343 (394)
|||+|||||+|+|+|||||||+++|++ ++++|+||||++||||||||||+||||||||||+|+|||.+|+++||||+
T Consensus 157 ~ek~~d~~q~g~G~mPaSfkv~~~p~~---~~~~l~aDfG~~aIGRv~pVDS~LWWIIllraY~k~tgD~s~~e~pevQr 233 (550)
T PLN03005 157 WEKRVDRFKLGEGVMPASFKVLHDPIR---ETDNIVADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLTLSETPECQK 233 (550)
T ss_pred hhhhhhcccCCCCCcCceeeecccccC---CCccccccccccccccccccchhhHHHHHHHHHHhhccchhhhhChHHHH
Confidence 999999999999999999999999855 45789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCcceeeecCCccccccccccCCCchhhhhhhhhcc
Q 016169 344 GIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQVSLICFF 393 (394)
Q Consensus 344 GIrlIL~LcL~~~Fd~fPtLlVpDgs~MIDRrMgV~GyPLEIQaLfy~A~ 393 (394)
||+|||+|||+++||||||||||||||||||||||||||||||||||+|.
T Consensus 234 gi~lil~lcLa~~Fd~~ptLlvpDgs~miDRrMgv~G~pLeiQaLfy~AL 283 (550)
T PLN03005 234 GMKLILSLCLAEGFDTFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMAL 283 (550)
T ss_pred HHHHHHHHhcccccCCCceEeccCCccccccccccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999984
No 3
>PLN02973 beta-fructofuranosidase
Probab=100.00 E-value=3e-92 Score=712.24 Aligned_cols=205 Identities=58% Similarity=1.006 Sum_probs=199.6
Q ss_pred cccccHHHHHHHHHHHHhhccccCccceEEecCCCCCCCCCCCcceeeccchHHHHHHHhcCcHHHHHHHHHHhhccccc
Q 016169 185 KREETEIEKEAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSW 264 (394)
Q Consensus 185 ~~~~~~~~~eAwelL~~s~V~y~g~PvGTVAA~D~~~~~aLNYdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ 264 (394)
.+++++++++||++||+|+|+|||+|||||||.||+ ++++||+|||+||||||||||||+||+|||||||++||+||+|
T Consensus 100 ~~~~~~~~~~aw~~l~~s~v~~~g~pvgtvAa~d~~-~~~lNY~qVFiRDfVpsaLafLl~Ge~eIVrnFl~~TL~lq~~ 178 (571)
T PLN02973 100 GFESHPMVGEAWDALRRSMVYFRGQPVGTIAAVDNS-EEKLNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLRLQSW 178 (571)
T ss_pred cCCCCcHHHHHHHHHHhheEEECCeeeeeeeccCCc-cccccCcchhhhccHHHHHHHHHCCCHHHHHHHHHHHHhhhhh
Confidence 578899999999999999999999999999999985 5899999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCcccceeEEeeccCCCCCcccccccCCCCcccccccccCCccHHHHHHHHHhhccCCcccccchhhHHH
Q 016169 265 EKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTG 344 (394)
Q Consensus 265 ek~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~sl~~~pevQrG 344 (394)
||++||||+|+|+|||||||+++|++ ++|+++||||++||||||||||+||||||||||+|+|||++|+++||||+|
T Consensus 179 ektld~~q~g~G~mPaSfkv~~~p~~---~~e~l~aDfG~~aIGRV~pVDS~LWWIIllraY~k~TgD~s~~e~pevQrg 255 (571)
T PLN02973 179 EKKIDRFQLGEGVMPASFKVFHDPVR---NHETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLADMPECQKG 255 (571)
T ss_pred HHHHHhcccCCCCcCceeeecccccC---ccccccccccccccccccccchhhHHHHHHHHHHHhccchhhhhcHHHHHH
Confidence 99999999999999999999999865 568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCcceeeecCCccccccccccCCCchhhhhhhhhcc
Q 016169 345 IKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQVSLICFF 393 (394)
Q Consensus 345 IrlIL~LcL~~~Fd~fPtLlVpDgs~MIDRrMgV~GyPLEIQaLfy~A~ 393 (394)
|+|||+|||+++||||||||||||||||||||||||||||||||||+|.
T Consensus 256 i~lil~lcL~~~Fd~~ptLlVpDgs~miDrrMgv~G~pLeiQaLfy~AL 304 (571)
T PLN02973 256 IRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMAL 304 (571)
T ss_pred HHHHHHHhcccccCCCceEeccCCccccccccccCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984
No 4
>PLN02703 beta-fructofuranosidase
Probab=100.00 E-value=1.9e-90 Score=702.80 Aligned_cols=213 Identities=74% Similarity=1.242 Sum_probs=204.8
Q ss_pred cccccccccHHHHHHHHHHHHhhccccCccceEEecCCCCCCCCCCCcceeeccchHHHHHHHhcCcHHHHHHHHHHhhc
Q 016169 181 GVRTKREETEIEKEAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQ 260 (394)
Q Consensus 181 g~~~~~~~~~~~~eAwelL~~s~V~y~g~PvGTVAA~D~~~~~aLNYdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~ 260 (394)
|-....+.++++++||+|||+|+|+|||+|+|||||.|+...+++||+|||+|||||||||||++||+|||||||++||+
T Consensus 122 ~~~~~~~~~~~~~eA~elL~~s~v~~~g~pvGtvAA~d~~~~~~lNY~qVFiRDfVpsaLafLl~Ge~eIVrnFl~~tL~ 201 (618)
T PLN02703 122 GNAQSVGTKSIEDEAWDLLRQSVVFYCGSPIGTIAANDPSSTSVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILYTLQ 201 (618)
T ss_pred CcccccCCChHHHHHHHHHHHhhhhhcCccceeEeccCCccccccCCCceeecccHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33468889999999999999999999999999999999865568999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCcccceeEEeeccCCCCC--cccccccCCCCcccccccccCCccHHHHHHHHHhhccCCcccccc
Q 016169 261 LQSWEKTVDCYSPGQGLMPASFKVRNVPLESNK--FEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQER 338 (394)
Q Consensus 261 LQs~ek~vd~~~~g~GvmPASFkV~~~p~~~~~--~eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~sl~~~ 338 (394)
||+|||++|+||+|+|+|||||||+++|+++++ +||+|+|||||+|||||+||||+||||||||||+|+|||++|+++
T Consensus 202 lq~~ektld~~q~g~G~mPaSfkv~~~~~~~~~~~~ee~l~aDfGe~AIgRV~pVDS~LWWIIllraY~k~TgD~sf~e~ 281 (618)
T PLN02703 202 LQSWEKTMDCHSPGQGLMPCSFKVKTVPLDGDDSMTEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCTGDLSVQER 281 (618)
T ss_pred hhhhHHHHHhccCCCCCcCceeeecccccccccccccccccCCcCccceeeeccccchhHHHHHHHHHHHhhccHHHhhh
Confidence 999999999999999999999999999987543 789999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhccCCCCcceeeecCCccccccccccCCCchhhhhhhhhcc
Q 016169 339 VDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQVSLICFF 393 (394)
Q Consensus 339 pevQrGIrlIL~LcL~~~Fd~fPtLlVpDgs~MIDRrMgV~GyPLEIQaLfy~A~ 393 (394)
|+||+|||+||+|||+++||||||||||||||||||||||||||||||||||+|.
T Consensus 282 ~~~Q~gI~liL~LcLa~~Fd~fPtLlVpDgs~miDRrMgv~G~PLEiQaLfy~AL 336 (618)
T PLN02703 282 VDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSAL 336 (618)
T ss_pred hhHHHHHHHHHHHHccCcCCCCceEeccCCCchhccccCcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999984
No 5
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=99.16 E-value=5.5e-11 Score=123.15 Aligned_cols=134 Identities=21% Similarity=0.239 Sum_probs=96.0
Q ss_pred CcceeeccchHHHHHHHh-cCcHHHHHHHHHHhhccccccccccccCCCCCcccceeEEeeccCCCCCcccccccCCCCc
Q 016169 227 YDQVFIRDFVPSALAFLL-KGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGES 305 (394)
Q Consensus 227 YdqvFiRDfVPsaLafLl-~Ge~EIVrnFL~~tL~LQs~ek~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~ADFGe~ 305 (394)
+=.+|.||-.+|.-++++ .|++|..|+-|....+.+ .+|+||-.| | +. + -.+-|+
T Consensus 290 wF~~WGRDt~Isl~Gl~l~tgr~~~A~~iL~~fa~~~-----------~~GliPN~~-----~-~~--g---~~p~Yn-- 345 (575)
T TIGR01561 290 WFDDWGRDSFISLEGLLLIDKQFDEAKEAILKFANLC-----------KRGLIPNNF-----I-AF--G---GDPIYN-- 345 (575)
T ss_pred hhccchhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh-----------HCCCCCCcc-----C-CC--C---CCccCC--
Confidence 556799999999987776 889999999999887777 699999999 2 10 1 134455
Q ss_pred ccccccccCCccHHHHHHHHHhhccCCccccc--chhhHHHHHHHHHhhhccCCCCc--c-ee-eecCCccccccc----
Q 016169 306 AIGRVAPVDSGLWWIILLRAYGKITGDYALQE--RVDVQTGIKLIMNLCLADGFDMF--P-SL-LVTDGSCMIDRR---- 375 (394)
Q Consensus 306 AIGRVapVDS~LWWiILlraY~k~TGD~sl~~--~pevQrGIrlIL~LcL~~~Fd~f--P-tL-lVpDgs~MIDRr---- 375 (394)
.|||+|||++++..|.+.|||..+.+ .|.+ .++|-..+-..+|... + -| .+.+.-.|.|-+
T Consensus 346 ------tvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l---~~ii~~y~~G~~~~i~~d~dGLi~~g~~lTWMDa~~g~~ 416 (575)
T TIGR01561 346 ------GVDASLWAIHAIDKTFAYSQDFLFIRDVVDKV---LDIIDNYCAGNDFAIGMDNDLIFHKGAPLTWMDAKVDER 416 (575)
T ss_pred ------CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH---HHHHHHHhcCCCcEEEECCCccEeCCCCCCCCCCCCCCc
Confidence 39999999999999999999987642 3333 3333334444555322 2 22 222234599965
Q ss_pred --cccCCCchhhhhhhhhcc
Q 016169 376 --MGIHGHPLEIQVSLICFF 393 (394)
Q Consensus 376 --MgV~GyPLEIQaLfy~A~ 393 (394)
.++.|+|.|||||||.|.
T Consensus 417 ~~tPR~G~~VEInALwYnAL 436 (575)
T TIGR01561 417 AVTPRAGAACEINALWYNAL 436 (575)
T ss_pred cCCCCCCccHHHHHHHHHHH
Confidence 458999999999999874
No 6
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=99.10 E-value=2.1e-10 Score=111.39 Aligned_cols=134 Identities=24% Similarity=0.328 Sum_probs=91.6
Q ss_pred CcceeeccchHHHH-HHHhcCcHHHHHHHHHHhhccccccccccccCCCCCcccceeEEeeccCCCCCcccccccCCCCc
Q 016169 227 YDQVFIRDFVPSAL-AFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGES 305 (394)
Q Consensus 227 YdqvFiRDfVPsaL-afLl~Ge~EIVrnFL~~tL~LQs~ek~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~ADFGe~ 305 (394)
|.. |.||-.++.= .+|..|+++..|+.|....+.| .+|.||-.|. . + -.+.||
T Consensus 28 F~~-~GRDt~Isl~gl~l~~~~~~~a~~~L~~~~~~~-----------~~G~ipn~~~----~-----~---~~~~Y~-- 81 (370)
T PF06202_consen 28 FST-WGRDTFISLPGLLLSPGRFEEARNILATFAGTQ-----------RHGLIPNELR----D-----G---EEPRYN-- 81 (370)
T ss_pred ccc-cccHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-----------hcCcccCccc----C-----C---CCCCCC--
Confidence 455 9999988621 3578899999999999888777 4999999992 1 1 124465
Q ss_pred ccccccccCCccHHHHHHHHHhhccCCcccc--cchhhHHHHHHHHHhhhccCCCCc-c--eeeecC---Cccccccc--
Q 016169 306 AIGRVAPVDSGLWWIILLRAYGKITGDYALQ--ERVDVQTGIKLIMNLCLADGFDMF-P--SLLVTD---GSCMIDRR-- 375 (394)
Q Consensus 306 AIGRVapVDS~LWWiILlraY~k~TGD~sl~--~~pevQrGIrlIL~LcL~~~Fd~f-P--tLlVpD---gs~MIDRr-- 375 (394)
.||+++||++++.-|.+.|||.++. .-|.++..|+++.+=-- .+..+- . .+...+ .-.|.|-.
T Consensus 82 ------s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~-~~~~~d~~~gl~~~~~~~~~~tWmD~~~~ 154 (370)
T PF06202_consen 82 ------SVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTD-FGIRVDPEDGLIYSGNGLNNQTWMDARND 154 (370)
T ss_pred ------CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCC-CccccccCCCeeecCCCCCCCCccccccC
Confidence 3899999999999999999999985 33566666666643100 011111 1 122222 35676732
Q ss_pred ----cccCCCchhhhhhhhhcc
Q 016169 376 ----MGIHGHPLEIQVSLICFF 393 (394)
Q Consensus 376 ----MgV~GyPLEIQaLfy~A~ 393 (394)
-+..|+|.|||+|+|.|.
T Consensus 155 g~~~tpr~g~~vEIqal~y~AL 176 (370)
T PF06202_consen 155 GRPVTPRDGAAVEIQALWYNAL 176 (370)
T ss_pred CccccCCCCcchHHHHHHHHHH
Confidence 234679999999999874
No 7
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=98.90 E-value=3e-09 Score=111.57 Aligned_cols=135 Identities=26% Similarity=0.271 Sum_probs=105.7
Q ss_pred CcceeeccchHHHHHHHhcCcHHHHHHHHHHhhccccccccccccCCCCCcccceeEEeeccCCCCCcccccccCCCCcc
Q 016169 227 YDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESA 306 (394)
Q Consensus 227 YdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~ADFGe~A 306 (394)
|. +|.||..+||+.+|+=|++|+.|.=|...++.. -.|.||-.| + ...|+..-+
T Consensus 282 F~-~fGRD~lIS~lgll~~g~~elArg~L~~~a~~~-----------~~GkIPhe~-----~---------~~~~~~~~Y 335 (641)
T COG3408 282 FS-PFGRDTLISALGLLLVGRFELARGTLNTLARYS-----------EPGKIPHEI-----L---------LSIPGEPYY 335 (641)
T ss_pred cc-ccchHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----------cCCCCcchh-----h---------hcCCCccee
Confidence 55 999999999999999999999999999988884 689999887 1 122332212
Q ss_pred cccccccCCccHHHHHHHHHhhccCCccc--ccchhhHHHHHHHHHhhhccCCCCcceeeecC--Cccccc------ccc
Q 016169 307 IGRVAPVDSGLWWIILLRAYGKITGDYAL--QERVDVQTGIKLIMNLCLADGFDMFPSLLVTD--GSCMID------RRM 376 (394)
Q Consensus 307 IGRVapVDS~LWWiILlraY~k~TGD~sl--~~~pevQrGIrlIL~LcL~~~Fd~fPtLlVpD--gs~MID------RrM 376 (394)
. +||+.+||++++.+|.+.|||..+ ...|.++.++++++..-=.. |+++=..+-.+ .-.|.| ..|
T Consensus 336 ~----tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~~~~~~-~~~~~~~l~~~~~~~tW~Ds~~~~~~~~ 410 (641)
T COG3408 336 N----TVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILKGFDFG-FDTYGDGLLEGGSNQTWMDSGDDIFAVT 410 (641)
T ss_pred c----cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCcc-ceecCcccccCCCCCCCeecCCcccccc
Confidence 1 699999999999999999999999 56789999999998443222 66777777776 334555 356
Q ss_pred ccCCCchhhhhhhhhc
Q 016169 377 GIHGHPLEIQVSLICF 392 (394)
Q Consensus 377 gV~GyPLEIQaLfy~A 392 (394)
|..|-|+||++|+|-+
T Consensus 411 ~~~g~pi~i~al~~~~ 426 (641)
T COG3408 411 PRAGKPVAINALQYYA 426 (641)
T ss_pred CCCCCceeHHHHHHHH
Confidence 7789999999997643
No 8
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=98.31 E-value=1.1e-06 Score=99.31 Aligned_cols=147 Identities=20% Similarity=0.281 Sum_probs=100.1
Q ss_pred EEecCCCCCCCCCCCcceeeccchHHHHH-HHhcCcHHHHHHHHHHhhccccccccccccCCCCCcccceeEEeeccCCC
Q 016169 213 TVAANDPGDKQPLNYDQVFIRDFVPSALA-FLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLES 291 (394)
Q Consensus 213 TVAA~D~~~~~aLNYdqvFiRDfVPsaLa-fLl~Ge~EIVrnFL~~tL~LQs~ek~vd~~~~g~GvmPASFkV~~~p~~~ 291 (394)
+|||-=|- =+-.|-.||.||-.+|.=+ +|..|++|..|+-|+.....- -+|+||-.| +.
T Consensus 1022 si~AGyPw--F~tg~mr~WGRDTfISLrGLlL~tGR~~eAk~ii~~fa~~l-----------r~GLIPNll----~~--- 1081 (1464)
T TIGR01531 1022 SLAAGLPH--FSVGYMRCWGRDTFIALRGMLLTTGRFDEARAIILAFAGTL-----------RHGLIPNLL----DE--- 1081 (1464)
T ss_pred eEEecCCc--cccCcccccchhheeecCcceeccCCHHHHHHHHHHHHHHH-----------HcCCCCCCC----CC---
Confidence 55554432 2457889999999988766 678999999998888776554 689999988 21
Q ss_pred CCcccccccCCCCcccccccccCCccHHHHHHHHHhhccCCc-cc---------------c-c----chhhHHHHHHHHH
Q 016169 292 NKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDY-AL---------------Q-E----RVDVQTGIKLIMN 350 (394)
Q Consensus 292 ~~~eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~-sl---------------~-~----~pevQrGIrlIL~ 350 (394)
+ -.+-|- .+||.|||+-+++-|++.++|- .+ . . ...+...||=||.
T Consensus 1082 --G---~~prYN--------t~DA~lWfi~AIqdY~~~~~dg~~iL~~~v~R~fp~Ddt~~~~~~~~~~~l~~~iqeIl~ 1148 (1464)
T TIGR01531 1082 --G---INPRYN--------CRDAAWFWLQCIQDYVEIVPNGEKILKDPVRRIYPDDDSIPVDDGRADQYLFEVIYEALQ 1148 (1464)
T ss_pred --C---Cccccc--------CccHHHHHHHHHHHHHHHcCCHHHhhhccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 1 122233 4999999999999999999983 32 0 0 1122334444442
Q ss_pred hhhcc-CC---------------CCcceeeecC-------------Cccccccccc--------------cCCCchhhhh
Q 016169 351 LCLAD-GF---------------DMFPSLLVTD-------------GSCMIDRRMG--------------IHGHPLEIQV 387 (394)
Q Consensus 351 LcL~~-~F---------------d~fPtLlVpD-------------gs~MIDRrMg--------------V~GyPLEIQa 387 (394)
-=..- .| ++|+.-+.-| +--|.| .|| +.|+|.||||
T Consensus 1149 ~h~~G~~fRE~NAGp~iD~~M~deGfn~~I~vD~~~GLI~gGn~~ncgTWMD-kmg~SekA~~~G~p~TPRdG~aVEIna 1227 (1464)
T TIGR01531 1149 KHFQGIQFRERNAGPQIDRVMTDEGFNVTIGVDWETGFIYGGNRFNCGTWMD-KMGESEKAGNKGIPATPRDGAAVEIVG 1227 (1464)
T ss_pred HHHcCCccccccccccchhhhccccccceEEEcCCCCcEecCCCCCCCCCcC-CCCcccccccCCcccCCCCCCceeHHH
Confidence 22211 23 4565555555 347999 776 7899999999
Q ss_pred hhhhcc
Q 016169 388 SLICFF 393 (394)
Q Consensus 388 Lfy~A~ 393 (394)
|||.|.
T Consensus 1228 LwynAL 1233 (1464)
T TIGR01531 1228 LLKSAL 1233 (1464)
T ss_pred HHHHHH
Confidence 999874
No 9
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=98.15 E-value=2.2e-05 Score=81.05 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=104.2
Q ss_pred HHHHHHHHhhcccc---Ccc-ceEEecCCCCCCCCCC--CcceeeccchHHHHHHHhcCcHHHHHHHHHHhhcccccccc
Q 016169 194 EAWRLLQEAVVTYC---ESP-IGTVAANDPGDKQPLN--YDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKT 267 (394)
Q Consensus 194 eAwelL~~s~V~y~---g~P-vGTVAA~D~~~~~aLN--YdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~ 267 (394)
+-|+++++|++... ..+ -+.|||.+.+.....| |.-||+||.+-+++||+.-|.+|.++.|+.-+++.|.
T Consensus 253 ~~~~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~~~a~~~l~~l~~~q~---- 328 (616)
T TIGR01577 253 KIYSLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYHDRVDRFFRWAMQTQS---- 328 (616)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCHHHHHHHHHHHHHhhC----
Confidence 56788888866442 222 4678887654323445 9999999999999999999999999999999999983
Q ss_pred ccccCCCCCcccceeEEeeccCCCCCc--ccccccCCCCcccccccccCCccHHHHHHHHHhhccCCccc--ccchhhHH
Q 016169 268 VDCYSPGQGLMPASFKVRNVPLESNKF--EEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYAL--QERVDVQT 343 (394)
Q Consensus 268 vd~~~~g~GvmPASFkV~~~p~~~~~~--eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~sl--~~~pevQr 343 (394)
..|-.|.-+- + ++... ..... .|..=+.+.+++.|.+.|||..+ ...|.+++
T Consensus 329 ------~~G~~~~~~~----~-dG~~~~~~~~~Q-------------~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~ 384 (616)
T TIGR01577 329 ------RDGSWQQRYY----L-NGRLAPLQWGLQ-------------IDETGSILWAMDQHYRLTNDRAFLEEIWESVQK 384 (616)
T ss_pred ------cCCCcceEEe----c-CCCCCCCCCCcc-------------ccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4555555552 1 11100 00111 22222233377788899999887 44466677
Q ss_pred HHHHHHHhhhccCCCCcceeeecCCccccccccccCCCchhhhhhhhhcc
Q 016169 344 GIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQVSLICFF 393 (394)
Q Consensus 344 GIrlIL~LcL~~~Fd~fPtLlVpDgs~MIDRrMgV~GyPLEIQaLfy~A~ 393 (394)
++..+++.- .+ ..|. ||-.-|-.| +|++.++.+++|.|.
T Consensus 385 a~~fl~~~~-~~---~l~~---~~~~lWEer----~G~~~~t~a~~~aAL 423 (616)
T TIGR01577 385 AAQYLILFI-DP---ETPL---PCRDLWEER----EGVFTYTASAVYGGL 423 (616)
T ss_pred HHHHHHHhc-cC---CCCC---CCCccceec----CCccCccHHHHHHHH
Confidence 666666522 11 1232 555556653 477889999998874
No 10
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=93.00 E-value=0.38 Score=48.00 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=78.3
Q ss_pred HHHHHHHhhcc----ccCc-cceEEecCCCCCCCCCCCcceeeccchHHHHHHHhcCc------------H---HHHHHH
Q 016169 195 AWRLLQEAVVT----YCES-PIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGE------------G---EIVRNF 254 (394)
Q Consensus 195 AwelL~~s~V~----y~g~-PvGTVAA~D~~~~~aLNYdqvFiRDfVPsaLafLl~Ge------------~---EIVrnF 254 (394)
+++++.+|+.. +++. +-+.|||.+.+. + +|.=+|+||.+-++.+++.-|. . ++.+.+
T Consensus 3 ~~~~~~rs~~~l~l~~~~~~~GaiiAsps~s~--p-dY~y~W~RD~a~~~~al~~~g~~~~~~~~~~~l~~~~~~~~~~~ 79 (448)
T PF00723_consen 3 YLDAVYRSALTLKLLTQEPITGAIIASPSTSL--P-DYRYCWVRDAAYTAYALWALGYRDEARAFFYELEQSLVKLMRGY 79 (448)
T ss_dssp HHHHHHHTBTTTHTTBTTSSTT-B-S-SSBSS--S-BTCSEEHHHHHHHHHHHHHHT-H--HHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCeEEeecccCC--C-CCceeecccHHHHHHHHHHhhhhHHHHHHHhhhhHhhhhhhhhh
Confidence 56666666653 3444 566667776542 2 9999999999999999997772 2 234567
Q ss_pred HHHhhccccccccccccCCCCCcccceeEEeeccCCCCCcccccccCCCCcccccccccCCccHHHHHHHHHhhccCCcc
Q 016169 255 LLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYA 334 (394)
Q Consensus 255 L~~tL~LQs~ek~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~s 334 (394)
|....++|........++.+.|+=-.-|.+.. .+--|..+-||.- .|..=-.++++..|.+......
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~------------~~~~g~~~w~~~Q-~D~~gl~l~~l~~~~~~g~~~~ 146 (448)
T PF00723_consen 80 LQPMYRQQGKVNPSGEFQSPEGLHEPGYNVSG------------PVRVGNPAWGRPQ-NDGPGLRLLALWQYIDSGLQII 146 (448)
T ss_dssp HHHHHHHHTS-BTTB-TTTTGGGGTTEEETTS------------EBTTS-B-ES--B-THHHHHHHHHHHHHHHTTHHHH
T ss_pred hhhhhhhcCccCCCccccCccccccceecCCC------------CcccCchhccCcC-CCchHHHHHHHHHHHHcCCCcc
Confidence 88888888764544444443344333442111 1112433455543 6766667778888833331222
Q ss_pred cccchh--hHHHHHHHHHhhhccCCCCc
Q 016169 335 LQERVD--VQTGIKLIMNLCLADGFDMF 360 (394)
Q Consensus 335 l~~~pe--vQrGIrlIL~LcL~~~Fd~f 360 (394)
....+- +|..+..|..-=-.|.||.|
T Consensus 147 ~~~~~~~~I~~~~~yi~~~w~~pd~dlW 174 (448)
T PF00723_consen 147 YTYWEVSFIKNDLDYIERNWREPDFDLW 174 (448)
T ss_dssp HTHHHHHTHHHHHHHHHHHTTSBEE-TT
T ss_pred cccchhHHHHHHHHHHHHHcCCcCCccc
Confidence 222233 34444444433334555544
No 11
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=92.10 E-value=0.23 Score=49.71 Aligned_cols=160 Identities=18% Similarity=0.133 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHHHhhc-cccCccceEEecCCCCCCCCCCCcceeeccchHHHHHH-HhcCcHHHHHHHHHHhhcccccc
Q 016169 188 ETEIEKEAWRLLQEAVV-TYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAF-LLKGEGEIVRNFLLHTLQLQSWE 265 (394)
Q Consensus 188 ~~~~~~eAwelL~~s~V-~y~g~PvGTVAA~D~~~~~aLNYdqvFiRDfVPsaLaf-Ll~Ge~EIVrnFL~~tL~LQs~e 265 (394)
.++.+.+-|+.-.+|+- ..++.+ .|-+.- .=+..|.-|...++++. .+.|+.+++|++|...+.-|
T Consensus 115 sd~~ln~i~~~~~~T~~~n~~~~~------~Dcp~R---dER~~w~GD~~~~~~~~~~~~~~~~l~~~~l~~~~~~q--- 182 (509)
T PF05592_consen 115 SDPLLNRIWEMSRRTLRSNMQDVF------TDCPKR---DERLGWTGDARVSALTAYYSFGDAALYRKWLRDFADSQ--- 182 (509)
T ss_dssp S-HHHHHHHHHHHHHHHHTBSSSB-------SBTTT----T---BHHHHHHHHHHHHCCT--HHHHHHHHHHHHGGT---
T ss_pred CcHHHHHHHHHHHHHHHhhCCCCc------eECcch---hhhcCCcchHHHHHHHHHHhCCcHHHHHHHHHHHHHhh---
Confidence 35677777777776643 223332 343211 01345888999888764 56789999999999999888
Q ss_pred ccccccCCCCCcccceeEEeeccCCCCCcccccccCCCCcccccccccCCccHHHHHHHHHhhccCCcccc--cchhhHH
Q 016169 266 KTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQ--ERVDVQT 343 (394)
Q Consensus 266 k~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~sl~--~~pevQr 343 (394)
...|.+|.-. |.. . .+ .- .-.|=++||++.++-|-+.|||.++. ..|.+.+
T Consensus 183 -------~~~G~~p~~~-----P~~-------~---~~--~~---~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~ 235 (509)
T PF05592_consen 183 -------RPDGLLPSVA-----PSY-------G---GG--GF---GIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKR 235 (509)
T ss_dssp -------TTSTT-SSBS-----S-------------SS--GG---GBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred -------cccCCceEEe-----ccc-------C---CC--CC---CCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4579988654 511 0 00 01 11455789999999999999999994 4566555
Q ss_pred HHHHHHHhhhccCCCCcceeeecCCccccccc------cccCCCchhhhhhhhhcc
Q 016169 344 GIKLIMNLCLADGFDMFPSLLVTDGSCMIDRR------MGIHGHPLEIQVSLICFF 393 (394)
Q Consensus 344 GIrlIL~LcL~~~Fd~fPtLlVpDgs~MIDRr------MgV~GyPLEIQaLfy~A~ 393 (394)
.|..+. ...=+ .|.-..+...+|-- ....+..+-.+++||.|.
T Consensus 236 ~l~~~~----~~~~~---~~~~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l 284 (509)
T PF05592_consen 236 YLDYLE----RRVDD---GLDGLPGWGFGDWLAPGNDGDGPTPGATITNALYYYAL 284 (509)
T ss_dssp HHHHHH----TTB-T---SSB-CCSB--S-SS----TT---SCCEEHHHHHHHHHH
T ss_pred HHHHHH----HhCCc---cccCCCCCceeecCCccCcccccchHHHHHHHHHHHHH
Confidence 555555 43333 22233444444522 344556666788888763
No 12
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=92.06 E-value=0.065 Score=53.41 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=30.4
Q ss_pred ccCCccHHHHHHHHHhhccCCccc--ccchhhHHHHHHHHHhhhccCCCCcceeeec-CCccccccccccCCCchhhhhh
Q 016169 312 PVDSGLWWIILLRAYGKITGDYAL--QERVDVQTGIKLIMNLCLADGFDMFPSLLVT-DGSCMIDRRMGIHGHPLEIQVS 388 (394)
Q Consensus 312 pVDS~LWWiILlraY~k~TGD~sl--~~~pevQrGIrlIL~LcL~~~Fd~fPtLlVp-Dgs~MIDRrMgV~GyPLEIQaL 388 (394)
=+|..++||+.+..|.+.|||.++ ..-|.|+++|+.++. .-..=|+.|.--.+ | ...| -...+|.--+...|
T Consensus 97 ~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D--~TyD-~~~~~G~say~~~L 171 (365)
T PF04685_consen 97 WKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPD--QTYD-DWSMYGPSAYCGGL 171 (365)
T ss_dssp --------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET-----SSST-T-EEEEEEHHHHHH
T ss_pred cccccccccccccccccccccchhhhhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCc--cccc-cCCeeCCCHHHHHH
Confidence 389999999999999999999999 456999999999994 11222333322211 1 1123 23367999999999
Q ss_pred hhhcc
Q 016169 389 LICFF 393 (394)
Q Consensus 389 fy~A~ 393 (394)
|++|+
T Consensus 172 ~laAL 176 (365)
T PF04685_consen 172 WLAAL 176 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99885
No 13
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=91.69 E-value=1.9 Score=46.72 Aligned_cols=55 Identities=24% Similarity=0.182 Sum_probs=45.7
Q ss_pred ccceEEecCCCCC----CCCCC--CcceeeccchHHHHHHHhcCcHHHHHHHHHHhhcccc
Q 016169 209 SPIGTVAANDPGD----KQPLN--YDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQS 263 (394)
Q Consensus 209 ~PvGTVAA~D~~~----~~aLN--YdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs 263 (394)
.+-+.|||...+= ....| |.=||.||++=+|.||+.-|..|..+.|+.-+++.|.
T Consensus 268 ~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~~~~a~~~~~~l~~~~~ 328 (648)
T TIGR01535 268 NPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGDVDSALRSLDYLAKVQQ 328 (648)
T ss_pred CCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 4467788874421 23446 9999999999999999999999999999999999994
No 14
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=83.14 E-value=2 Score=46.06 Aligned_cols=56 Identities=23% Similarity=0.125 Sum_probs=45.3
Q ss_pred cceEEecCCCCCC--CCCC--CcceeeccchHHHHHHHhcCcHHHHHHHHHHhhcccccc
Q 016169 210 PIGTVAANDPGDK--QPLN--YDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWE 265 (394)
Q Consensus 210 PvGTVAA~D~~~~--~aLN--YdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~e 265 (394)
+-+.|||.+.+-. ..-. |+-||+||++-+++|++.-|..+..+.|+.-+.++|..+
T Consensus 261 ~G~ivAs~t~~l~~~~~g~~dY~y~W~RD~~~~~~AL~~~G~~~~a~~~f~~l~~~~~~~ 320 (612)
T COG3387 261 TGAIVASPTTSLPELIGGTRDYRYVWPRDASYAALALLAIGYKKEALRFFEFLPDVQTPN 320 (612)
T ss_pred CCcEEEcCCCCccccCCCCCCceEEccCcHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Confidence 4566777654322 2333 999999999999999999999999999999999999544
No 15
>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.63 E-value=13 Score=37.79 Aligned_cols=41 Identities=34% Similarity=0.568 Sum_probs=32.5
Q ss_pred HHHHHhhhccC----CCCcc-----eeeecCCccccccccccCCCchhhhhh
Q 016169 346 KLIMNLCLADG----FDMFP-----SLLVTDGSCMIDRRMGIHGHPLEIQVS 388 (394)
Q Consensus 346 rlIL~LcL~~~----Fd~fP-----tLlVpDgs~MIDRrMgV~GyPLEIQaL 388 (394)
.++++||+.+. ||.+| .|.|+-|. .|+=-.++||||+-|+.
T Consensus 109 ~l~l~l~~~~~~l~~~~~~~~h~RdiLVCTHgn--~D~cCarfG~P~Y~~~r 158 (316)
T COG4759 109 VLILALLLQGKELAQFDIYPQHTRDILVCTHGN--VDVCCARFGYPFYQQLR 158 (316)
T ss_pred hhHHHHhcCCccchhhccchhhhceEEEecCCC--hhhhhhhcCcHHHHHHH
Confidence 36778888765 99999 67788776 47777899999998874
No 16
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=43.52 E-value=2.3e+02 Score=30.85 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=73.4
Q ss_pred cccHHHHHHHHHHHHhhccccCccceEEecCCCCCC-CCCCCccee---eccchHHHHHHHhcC--c----HHHHHHHHH
Q 016169 187 EETEIEKEAWRLLQEAVVTYCESPIGTVAANDPGDK-QPLNYDQVF---IRDFVPSALAFLLKG--E----GEIVRNFLL 256 (394)
Q Consensus 187 ~~~~~~~eAwelL~~s~V~y~g~PvGTVAA~D~~~~-~aLNYdqvF---iRDfVPsaLafLl~G--e----~EIVrnFL~ 256 (394)
++++.+++|.+-|++..|.-.|.. .+-..+.+.. =+.-|...+ +-|-+-+..|++..+ + .+-++..+.
T Consensus 333 ~~~p~l~kA~~~L~~~Qi~~~~~w--~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~ 410 (635)
T TIGR01507 333 ADHDALVKAGEWLLDKQITVPGDW--AVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFR 410 (635)
T ss_pred CCCHHHHHHHHHHHhhcccCCCCc--cccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHH
Confidence 457899999999999877522210 1111111100 012221221 224444444544443 2 257888888
Q ss_pred HhhccccccccccccCCCCCcccceeEEeeccCCCCCc---ccccccCCCCcccccccccCCccHHHHHHHHHhhccCCc
Q 016169 257 HTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKF---EEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDY 333 (394)
Q Consensus 257 ~tL~LQs~ek~vd~~~~g~GvmPASFkV~~~p~~~~~~---eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~ 333 (394)
-+|..|. ..|-.++ | +. +++. +..--+||+. .+..- .+|-+ --++.||... |+.
T Consensus 411 wLl~~Qn----------~dGgw~a-f----~~--~~~~~~l~~~~f~d~~~-~~D~~-~~d~T---a~~l~al~~~-g~~ 467 (635)
T TIGR01507 411 WIAGMQS----------SNGGWGA-F----DV--DNTSDLLNHIPFCDFGA-VTDPP-TADVT---ARVLECLGSF-GYD 467 (635)
T ss_pred HHHHhcC----------CCCCEec-c----cC--CcchhHHhcCCcccccc-ccCCC-CccHH---HHHHHHHHHh-CCC
Confidence 8888884 4566654 3 11 0100 0011233332 22211 12322 3456677543 221
Q ss_pred ccccchhhHHHHHHHHHhhhccCCCCcceeeecCCcc
Q 016169 334 ALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSC 370 (394)
Q Consensus 334 sl~~~pevQrGIrlIL~LcL~~~Fd~fPtLlVpDgs~ 370 (394)
...+.+++|+++|+ ..+.+||+.
T Consensus 468 --~~~~~i~rav~~L~------------~~Q~~dG~W 490 (635)
T TIGR01507 468 --DAWPVIERAVEYLK------------REQEPDGSW 490 (635)
T ss_pred --chhHHHHHHHHHHH------------HccCCCCCC
Confidence 12789999999999 677899986
No 17
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=39.03 E-value=14 Score=43.04 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=54.1
Q ss_pred CCCCcceeeccchHHHH-HHHhcCcHHHHHHHHHHhhccccccccccccCCCCCcccceeEEeeccCCCCCcccccccCC
Q 016169 224 PLNYDQVFIRDFVPSAL-AFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDF 302 (394)
Q Consensus 224 aLNYdqvFiRDfVPsaL-afLl~Ge~EIVrnFL~~tL~LQs~ek~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~ADF 302 (394)
+.+|=+||.||-.++-= .+|..|++.-.|+-++..-+- +.+|+||--. + |...|-|
T Consensus 1076 svg~mRcWGRDtFIaLrG~ll~TGRy~EAr~iIlaFa~t-----------lrHGLIPNLL----d--------~G~~~Ry 1132 (1521)
T KOG3625|consen 1076 SVGIMRCWGRDTFIALRGILLITGRYVEARNIILAFAGT-----------LRHGLIPNLL----D--------EGIYARY 1132 (1521)
T ss_pred hhhhhhhcccceeeecccceEeecchHHHHHHHHHHHHH-----------hhccccchhh----h--------ccccccc
Confidence 57999999999776543 356789999888876654321 3689999755 2 2233333
Q ss_pred CCcccccccccCCccHHHHHHHHHhhc
Q 016169 303 GESAIGRVAPVDSGLWWIILLRAYGKI 329 (394)
Q Consensus 303 Ge~AIGRVapVDS~LWWiILlraY~k~ 329 (394)
- --||..||+-...-|++.
T Consensus 1133 N--------cRDA~W~wl~~Iq~Yve~ 1151 (1521)
T KOG3625|consen 1133 N--------CRDAVWWWLQCIQDYVEM 1151 (1521)
T ss_pred c--------chHHHHHHHHHHHHHHHh
Confidence 3 359999999999999876
No 18
>PRK10137 alpha-glucosidase; Provisional
Probab=31.08 E-value=3e+02 Score=31.38 Aligned_cols=136 Identities=13% Similarity=0.050 Sum_probs=86.3
Q ss_pred HHHHhhccccCccceEEecCCCCC---CCCC---CCcceeeccchHHHHHHHhcCcHHHHHHHHHHhhcccccccccccc
Q 016169 198 LLQEAVVTYCESPIGTVAANDPGD---KQPL---NYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCY 271 (394)
Q Consensus 198 lL~~s~V~y~g~PvGTVAA~D~~~---~~aL---NYdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~vd~~ 271 (394)
+..+|+...+|+.-|.--|..+.- +..+ .+.+.|.||-...|++++ .-.+|+.++=|..+++.|.++. |-+
T Consensus 309 l~~kA~~~L~~Nwr~~~g~~~~~~t~Ps~gl~Wf~~~~~W~WDS~~~A~~la-~fdpelA~~~lr~Lf~~Q~~~~--d~~ 385 (786)
T PRK10137 309 VAVKAMETLNGNWRSPAGAVKFNTVTPSVTARWFSGNQTWPWDTWKQAYAMA-HFNPDVAKENIRAVFSWQIQPD--DSV 385 (786)
T ss_pred HHHHHHHHHHHhccccccccccCceEeCCCCCCCCCCCccchHHHHHHHHHh-hcCHHHHHHHHHHHHHhhcccc--CCC
Confidence 444444444555556443333321 1122 234599999999999876 4678999999999999996543 444
Q ss_pred CC-CCCcccceeEEeeccCCCCCcccccccCCC-Cc---ccccccccCCccHHHHHHHHHhhccCCccc--ccchhhHHH
Q 016169 272 SP-GQGLMPASFKVRNVPLESNKFEEVLDPDFG-ES---AIGRVAPVDSGLWWIILLRAYGKITGDYAL--QERVDVQTG 344 (394)
Q Consensus 272 ~~-g~GvmPASFkV~~~p~~~~~~eE~L~ADFG-e~---AIGRVapVDS~LWWiILlraY~k~TGD~sl--~~~pevQrG 344 (394)
.+ ..|.||--+ .+.| -+|.| +. .-|-..| =-+.++++.|.+.|||.++ ...|...+.
T Consensus 386 r~~~~G~Iph~v--f~~~----------~p~R~g~~~~~ne~~tqP----PL~a~av~~vy~~t~d~~fl~~lyPkL~a~ 449 (786)
T PRK10137 386 RPQDVGFVPDLI--AYNL----------SPERGGDGGNWNERNTKP----SLAAWSVMEVYNVTQDKAWLAEMYPKLVAY 449 (786)
T ss_pred CcCCCCeeeEEe--ccCC----------CcccccccccccCCCcCc----CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44 368888755 2322 12222 11 1123334 3456677777799999998 567999999
Q ss_pred HHHHHHhh
Q 016169 345 IKLIMNLC 352 (394)
Q Consensus 345 IrlIL~Lc 352 (394)
.+|++.-.
T Consensus 450 h~Ww~~~R 457 (786)
T PRK10137 450 HDWWLRNR 457 (786)
T ss_pred HHHHHhcC
Confidence 99999644
No 19
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=29.29 E-value=36 Score=35.93 Aligned_cols=136 Identities=20% Similarity=0.181 Sum_probs=70.2
Q ss_pred cCccceEEecCCCCCCCCCCCcceeeccchHHH--HHHHhcCcHHHHHHHHHHhhccccccccccccCCCCCcccceeEE
Q 016169 207 CESPIGTVAANDPGDKQPLNYDQVFIRDFVPSA--LAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKV 284 (394)
Q Consensus 207 ~g~PvGTVAA~D~~~~~aLNYdqvFiRDfVPsa--LafLl~Ge~EIVrnFL~~tL~LQs~ek~vd~~~~g~GvmPASFkV 284 (394)
.+.+-=.|..-|=. --|+||-+--. ..-|++.+++ ++.-+...+..|..--.+|-|--.---=|.|-.
T Consensus 29 ~~~~~tFViTGDIp--------AmWLRDS~~Q~~pYl~l~~~d~~-l~~li~G~I~rQa~~I~~dPYaNAF~~~~~s~~- 98 (424)
T PF06824_consen 29 DEDPDTFVITGDIP--------AMWLRDSAAQLRPYLPLAKEDPS-LARLIRGVINRQARYILIDPYANAFNPPPESGI- 98 (424)
T ss_dssp TSTSEEEE-SBSSS--------SEEHHHHHHHCGGGGGGGCC-HH-HHHHHHHHHHHHHHHHHH-TT-SEEESS------
T ss_pred CCCCCeEEEecCch--------hhhccccHhHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHhcchhhcccCCcccccc-
Confidence 34555555555532 36889955322 2334555665 456677788888776666655321111111110
Q ss_pred eeccCCCCC--ccccccc--CCCCcccccccccCCccHHHHHHHHHhhccCCcccccchhhHHHHHHHHHhhhccCC
Q 016169 285 RNVPLESNK--FEEVLDP--DFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADGF 357 (394)
Q Consensus 285 ~~~p~~~~~--~eE~L~A--DFGe~AIGRVapVDS~LWWiILlraY~k~TGD~sl~~~pevQrGIrlIL~LcL~~~F 357 (394)
.| .++. ..+.... |-+ ..-=|=--+||-=..+-|.+.|-|.|||.++-... +.+|+++||+..=.+.-
T Consensus 99 --~~-~~~~~~~~D~~~~~~~~~-~v~ErKyElDSL~~~l~La~~y~~~Tgd~~~f~~~-~~~A~~~il~~~~~eq~ 170 (424)
T PF06824_consen 99 --PP-NGNGHWQSDTTEMPYDPP-WVWERKYELDSLCYFLQLAYQYWKATGDTSFFDED-WLRAVRLILDTWRTEQR 170 (424)
T ss_dssp --TS-S-TSGCCGSBS------T-TEEE----HHHHHHHHHHHHHHHHHH--GTTSSHH-HHHHHHHHHHHHHHTTG
T ss_pred --cc-cccCCCCCCccCCCcCCC-ceeeecchhhhhhHHHHHHHHHHHhhCChhhhhHH-HHHHHHHHHHHHHHHHH
Confidence 00 0000 0001100 100 01112234899999999999999999999996666 99999999998765544
No 20
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=28.09 E-value=44 Score=24.39 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=13.1
Q ss_pred cchhhHHHHHHHHHh
Q 016169 337 ERVDVQTGIKLIMNL 351 (394)
Q Consensus 337 ~~pevQrGIrlIL~L 351 (394)
..||||+||..++.+
T Consensus 21 ~DpdvqrgL~~ll~~ 35 (42)
T PF07849_consen 21 RDPDVQRGLGFLLAF 35 (42)
T ss_pred cCHHHHHHHHHHHHH
Confidence 569999999999865
No 21
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=26.71 E-value=81 Score=27.23 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHhhccccCccceEEecCCCC
Q 016169 189 TEIEKEAWRLLQEAVVTYCESPIGTVAANDPG 220 (394)
Q Consensus 189 ~~~~~eAwelL~~s~V~y~g~PvGTVAA~D~~ 220 (394)
++++++|.+++++|..-|-+.|||.+...+..
T Consensus 1 ~~l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G 32 (127)
T TIGR01354 1 DKLFKAAQEARKNAYAPYSNFKVGAALLTKDG 32 (127)
T ss_pred CHHHHHHHHHHHhcCCCcCCCeEEEEEEeCCC
Confidence 36889999999999999999999998876643
No 22
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=25.32 E-value=1.4e+02 Score=28.96 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=51.9
Q ss_pred CcceeeccchHHHHHHHhcCcHHHHHHHHHHhhc---cccccccccccCCCCCcccceeEEeeccCCCCCcccccccCCC
Q 016169 227 YDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQ---LQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFG 303 (394)
Q Consensus 227 YdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~---LQs~ek~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~ADFG 303 (394)
.+.|+ .-+||+.|.+ .++++++-...... -+.-.++|--|..| ..-.|.-| +.+-.+=+
T Consensus 74 lgDC~----~lsaL~~la~-~~~~i~~lf~~~~~~~~~~~G~y~v~l~~~G-----~w~~V~VD--------D~lP~~~~ 135 (315)
T cd00044 74 LGDCW----FLAALAALAE-RPELLKRVIPPDQSFEENYAGIYHFRFWKNG-----EWVEVVID--------DRLPTSNG 135 (315)
T ss_pred ccchH----HHHHHHHHHc-CHHHHhheEcCCcccccCcCcEEEEEEEECC-----EEEEEEec--------CCCeecCC
Confidence 45555 5678887776 56677765544322 12222333333322 12222222 22333323
Q ss_pred CcccccccccCCccHHH-HHHHHHhhccCCcccccchhhHHHHHHH
Q 016169 304 ESAIGRVAPVDSGLWWI-ILLRAYGKITGDYALQERVDVQTGIKLI 348 (394)
Q Consensus 304 e~AIGRVapVDS~LWWi-ILlraY~k~TGD~sl~~~pevQrGIrlI 348 (394)
.-.-++ +.|..-+|+ +|=.||.|..|.|..-..-....+++.|
T Consensus 136 ~~~~~~--s~~~~e~W~~LlEKAyAK~~GsY~~i~gg~~~~al~~L 179 (315)
T cd00044 136 GLLFMH--SRDRNELWVALLEKAYAKLHGSYEALVGGNTAEALEDL 179 (315)
T ss_pred ceEEEE--ECCCCeEcHHHHHHHHHhhcCCccccCCCCHHHHHHHh
Confidence 222222 344445555 6669999999988775555555666554
No 23
>PF01315 Ald_Xan_dh_C: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; InterPro: IPR000674 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1N63_E 1N60_B 1ZXI_E 1N5W_E 1N62_B 1N61_E 3AN1_B 2E3T_A 1WYG_A 2W3R_D ....
Probab=23.27 E-value=46 Score=27.97 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=17.6
Q ss_pred HHHHhhccccCccceEEecCCCC
Q 016169 198 LLQEAVVTYCESPIGTVAANDPG 220 (394)
Q Consensus 198 lL~~s~V~y~g~PvGTVAA~D~~ 220 (394)
+|-.--|+|.|+||+.|+|.+..
T Consensus 72 ~la~~~V~y~GqpVa~VvAet~~ 94 (111)
T PF01315_consen 72 VLADDKVRYVGQPVALVVAETRE 94 (111)
T ss_dssp SS-SSEESSTT-EEEEEEESSHH
T ss_pred eccCCeEeECCCeEEEEEECCHH
Confidence 44667899999999999998754
No 24
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=21.35 E-value=66 Score=25.14 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=16.6
Q ss_pred chhhHHHHHHHHHhhhccCCCCcceeeecCCcc
Q 016169 338 RVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSC 370 (394)
Q Consensus 338 ~pevQrGIrlIL~LcL~~~Fd~fPtLlVpDgs~ 370 (394)
.+.+++++++|+ ..+.+||++
T Consensus 91 ~~~~~~a~~~l~------------~~Q~~dGg~ 111 (113)
T PF13249_consen 91 EEAVRKAVDWLL------------SCQNPDGGW 111 (113)
T ss_dssp HTTHCCHHHHHH------------HTB-TTSSB
T ss_pred cHHHHHHHHHHH------------HhcCCCCCC
Confidence 789999999999 556677765
No 25
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=21.18 E-value=5.8e+02 Score=27.80 Aligned_cols=150 Identities=23% Similarity=0.236 Sum_probs=78.4
Q ss_pred cccHHHHHHHHHHHHhhccccCccceEEecCCCCCC-CCC---CCccee--eccchHHHHHH--Hhc----CcHHHHHHH
Q 016169 187 EETEIEKEAWRLLQEAVVTYCESPIGTVAANDPGDK-QPL---NYDQVF--IRDFVPSALAF--LLK----GEGEIVRNF 254 (394)
Q Consensus 187 ~~~~~~~eAwelL~~s~V~y~g~PvGTVAA~D~~~~-~aL---NYdqvF--iRDfVPsaLaf--Ll~----Ge~EIVrnF 254 (394)
+.++.+++|.+-|.++.+. ..+-|-....++... .+- .+++-+ +-|-+-.+|++ ++. -..+-++..
T Consensus 316 ~~~~~i~ka~~wL~~~Q~~--~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a 393 (621)
T TIGR01787 316 EFHPALVKAHEWLLLSQIP--DNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDA 393 (621)
T ss_pred ccCHHHHHHHHHHHHHhCC--CCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHH
Confidence 4567899999988886663 222243343333211 111 344544 55666666553 332 123667778
Q ss_pred HHHhhccccccccccccCCCCCcccceeEEeeccCCCCCcccccc--cCCCCcccccccccCCccHHHHHHHHHhhccCC
Q 016169 255 LLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLD--PDFGESAIGRVAPVDSGLWWIILLRAYGKITGD 332 (394)
Q Consensus 255 L~~tL~LQs~ek~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~--ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD 332 (394)
+.-++.+|. ..|=.++ | ++.+...--|.+. -.|++..+ .-.-+|.+-+=+..|.++..+ ++
T Consensus 394 ~~~Ll~~Qn----------~dGGw~a-y----~~~~~~~~l~~l~p~e~f~d~~~-d~~~~~~T~~~l~aL~~~~~r-~~ 456 (621)
T TIGR01787 394 VNWILGMQS----------SNGGFAA-Y----DPDNTGEWLELLNPSEVFGDIMI-DPPYVDVTARVIQALGAFGHR-AD 456 (621)
T ss_pred HHHHHHHcC----------CCCCEee-e----ccccchHHHHHhcchhhhccccc-cCCCCchHHHHHHHHHHhcCc-cH
Confidence 888888884 4455554 3 1100000001110 12443211 112245566666777776421 11
Q ss_pred cccccchhhHHHHHHHHHhhhccCCCCcceeeecCCcc
Q 016169 333 YALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSC 370 (394)
Q Consensus 333 ~sl~~~pevQrGIrlIL~LcL~~~Fd~fPtLlVpDgs~ 370 (394)
...+.+++|+++|+ ..+-+||++
T Consensus 457 ---~~~~~i~rAl~~L~------------~~Q~~DGsw 479 (621)
T TIGR01787 457 ---EIRNVLERALEYLR------------REQRADGSW 479 (621)
T ss_pred ---hHHHHHHHHHHHHH------------HhcCCCCCC
Confidence 12367999999999 567788885
No 26
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=20.86 E-value=49 Score=29.50 Aligned_cols=13 Identities=54% Similarity=0.991 Sum_probs=10.1
Q ss_pred CCcceeee-cCCcc
Q 016169 358 DMFPSLLV-TDGSC 370 (394)
Q Consensus 358 d~fPtLlV-pDgs~ 370 (394)
.+|||||| ||||-
T Consensus 43 R~Ypv~lV~pDGST 56 (116)
T PF09776_consen 43 RLYPVLLVRPDGST 56 (116)
T ss_pred hhccEEEEecCCCE
Confidence 36898887 89985
No 27
>PRK09979 putative rho operon leader peptide; Provisional
Probab=20.78 E-value=45 Score=23.92 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.1
Q ss_pred cccccccccceeeecc
Q 016169 7 LGNSTMKLSGRFLIPC 22 (394)
Q Consensus 7 ~~~~~m~~~~r~l~~~ 22 (394)
|.-|.++|+|||...+
T Consensus 6 isgsslnpscrfssay 21 (33)
T PRK09979 6 ISGSSLNPSCRFSSAY 21 (33)
T ss_pred ccCCcCCccccccccc
Confidence 6678899999997665
Done!