Query 016171
Match_columns 394
No_of_seqs 95 out of 104
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:26:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14778 ODR4-like: Olfactory 100.0 9.8E-93 2.1E-97 713.1 36.0 330 29-393 1-345 (362)
2 KOG4703 Uncharacterized conser 100.0 2.6E-46 5.6E-51 355.5 7.5 288 22-392 4-349 (431)
3 KOG4703 Uncharacterized conser 93.3 0.063 1.4E-06 52.8 2.9 54 101-154 1-72 (431)
4 cd08057 MPN_euk_non_mb Mpr1p, 90.7 5 0.00011 35.8 11.9 68 24-119 22-89 (157)
5 cd08065 MPN_eIF3h Mpr1p, Pad1p 88.0 11 0.00025 36.7 13.1 131 3-167 1-134 (266)
6 PF01398 JAB: JAB1/Mov34/MPN/P 86.2 2.1 4.5E-05 35.8 5.9 90 2-118 3-93 (114)
7 smart00232 JAB_MPN JAB/MPN dom 80.7 12 0.00027 31.5 8.6 79 12-117 9-87 (135)
8 cd08060 MPN_UPF0172 Mov34/MPN/ 80.4 12 0.00027 34.6 9.0 93 25-154 19-111 (182)
9 cd08069 MPN_RPN11_CSN5 Mov34/M 79.3 47 0.001 32.5 13.2 115 3-155 10-128 (268)
10 cd08072 MPN_archaeal Mov34/MPN 76.2 22 0.00047 30.3 8.8 21 101-121 54-74 (117)
11 cd08063 MPN_CSN6 Mpr1p, Pad1p 74.4 50 0.0011 32.6 12.0 71 24-121 28-98 (288)
12 PF03665 UPF0172: Uncharacteri 66.1 63 0.0014 30.2 10.1 120 1-157 1-120 (196)
13 cd08062 MPN_RPN7_8 Mpr1p, Pad1 62.6 32 0.0007 34.0 7.8 69 24-117 25-93 (280)
14 cd08070 MPN_like Mpr1p, Pad1p 53.8 50 0.0011 28.2 6.7 66 26-119 18-83 (128)
15 cd07767 MPN Mpr1p, Pad1p N-ter 45.4 1.2E+02 0.0027 24.5 7.7 26 100-125 57-83 (116)
16 PLN03246 26S proteasome regula 40.3 1.3E+02 0.0027 30.3 8.0 69 24-117 30-98 (303)
17 cd08067 MPN_2A_DUB Mov34/MPN/P 29.6 4.6E+02 0.0099 24.3 15.0 101 25-155 26-127 (187)
18 cd08068 MPN_BRCC36 Mov34/MPN/P 28.7 3.5E+02 0.0076 26.4 8.7 35 84-118 64-101 (244)
19 cd08066 MPN_AMSH_like Mov34/MP 27.2 4.8E+02 0.01 23.8 9.0 34 3-37 2-38 (173)
20 cd08064 MPN_eIF3f Mpr1p, Pad1p 27.2 2.3E+02 0.005 27.5 7.3 66 24-117 22-87 (265)
21 cd08058 MPN_euk_mb Mpr1p, Pad1 25.2 3.5E+02 0.0077 22.5 7.3 27 99-125 58-85 (119)
22 TIGR02256 ICE_VC0181 integrati 24.6 3.5E+02 0.0075 23.8 7.2 85 26-136 18-102 (131)
23 PF03721 UDPG_MGDP_dh_N: UDP-g 22.2 44 0.00096 30.7 1.2 73 4-108 44-116 (185)
24 PLN02353 probable UDP-glucose 21.9 1.7E+02 0.0037 31.1 5.6 47 40-109 78-124 (473)
25 PF09904 HTH_43: Winged helix- 21.1 58 0.0013 26.9 1.5 16 85-100 73-88 (90)
26 COG1004 Ugd Predicted UDP-gluc 20.9 1.3E+02 0.0029 31.4 4.4 70 3-105 43-113 (414)
No 1
>PF14778 ODR4-like: Olfactory receptor 4-like
Probab=100.00 E-value=9.8e-93 Score=713.06 Aligned_cols=330 Identities=35% Similarity=0.600 Sum_probs=288.0
Q ss_pred EEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccCcceEE
Q 016171 29 GLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLLGGIKV 108 (394)
Q Consensus 29 GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLPGGi~V 108 (394)
||||||+++ ++||||||++|||+++++++. ++ +.+ +..++++||++|||||||||+|||||||+|
T Consensus 1 GLlIGq~~s-~~kd~Vv~l~~tP~~d~~~~~-----~~-~~~--------~~~~~~~id~~WVaeHA~qVsRMLPGGi~V 65 (362)
T PF14778_consen 1 GLLIGQSSS-SQKDYVVHLARTPPEDTDDEE-----SD-VRT--------SDSSIKDIDEEWVAEHARQVSRMLPGGISV 65 (362)
T ss_pred CeEeccccC-CCcceEEEecCCCCccccccc-----cc-ccc--------ccccccccCHHHHHHHHHHHHhhCCCCcEE
Confidence 899999954 499999999999999998740 00 000 234588999999999999999999999999
Q ss_pred EEEEEEecchhhccch--HHHHHHHHHHHh-hCCCCcCCCCceEEEEEecCC-CeEEEEeeeccCCCCCCCCCcceeeec
Q 016171 109 VGIYVWATDSAFKNST--IELCQTVNAAAK-AVPILEIDSDERLLVHIGYSP-RRYTCRNCTITSNITSSCLRPCDLKTG 184 (394)
Q Consensus 109 lGifv~~~~~~~~~~~--~~L~~~l~~v~k-~~~l~~~~~~e~l~Lhi~~st-kk~~Ck~~d~~~~~~~ss~kpadwK~~ 184 (394)
|||||+++++.|++++ ..|+++++. .+ ....++.+++|+++||||++| ||++||+|++.++ ++++||||||||
T Consensus 66 lGifvv~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~e~~~l~i~~st~kk~~Ck~~~~~~~--~~~~kpad~K~~ 142 (362)
T PF14778_consen 66 LGIFVVAPDDAFKDSSTLNKLKKLLFS-SNSLWSVYNDDVSERLLLHICSSTSKKLTCKSYDVADP--KSSLKPADWKFQ 142 (362)
T ss_pred EEEEEEcCHHHhccchHHHHHHHHHhh-hcccccccCCCcccceEEEEEcccCceEEEEEEEecCC--CCCCCCccEEec
Confidence 9999999999999876 567777773 22 236678899999999999999 9999999999876 999999999999
Q ss_pred ccccceeEEEEEEEeceeeeeeecCCCCcchHHHHHHHHHHHHHHhhccceEEEcCeeccCCCCCC---------CCCce
Q 016171 185 LVLKTLRTFKCTYNFSLRLPIRLVGASNTQTFSDILRQGISVHANELRGAKAVVDGNFVVNDEPCS---------TDGLH 255 (394)
Q Consensus 185 ~~~~~w~~l~c~~~~d~~lPl~~~~~~~~~~l~~~l~~~l~~~~~~l~~s~~lidG~~~~~d~~l~---------~~~~~ 255 (394)
++.++|++|+|+|+||+++||.+. ....+++++||+++|+.|+++|++|++||||+++++++++. ++++|
T Consensus 143 ~~~~~w~~l~c~~~~d~~~pl~~~-~~~~~~~~~~l~~~l~~~~~~l~~s~~lidG~~~~~~~~l~~~~~~~~~~~~~~~ 221 (362)
T PF14778_consen 143 NKPTSWIQLECSYDFDLVIPLSDG-KSSKETLEKQLKNILEPWAKQLESSVVLIDGEVRDDDEDLESSSKSSKNSSDSIF 221 (362)
T ss_pred cccceEEEEEEEEEEeeeeeccCC-ccchHHHHHHHHHHHHHHHHHhhccEEEECCEEcCCcchhhcccCCcccCCCCcE
Confidence 999999999999999999999942 23457999999999999999999999999999999999884 34578
Q ss_pred EEEEEeecCcCCCcccccccceeeEEEEEeEEEEEEEeCCCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCCCCC
Q 016171 256 EVELLLPLLNDTSAEACSQKDVVGLLILSGSVCSFAFLTPKEPISQAFSEIKGDIIMSLQSRLDVICDEVDEDLAPTAGG 335 (394)
Q Consensus 256 ~v~ll~p~~~~~~~~~~~~~~~~g~i~~~G~v~~rAyv~~k~~v~~Ai~aIK~DIirSL~sR~ei~~d~l~~~~~~~~~~ 335 (394)
+|++|+|+.++..+.++.++.|+|+|+|+|.|+||||+|+|++|++|++|||+||||||++|+|||||+|++++++..+.
T Consensus 222 ~v~ll~p~~~~~~~~~~~~~~~~g~i~~~G~v~~rAyv~~K~sv~eA~~alK~DIirSL~sR~ei~~d~l~~~~~~~~~~ 301 (362)
T PF14778_consen 222 DVDLLLPFQNSNPRSTIKVQSCSGSIRFSGSVSCRAYVHSKESVAEAIQALKRDIIRSLSSRLEILCDDLEDDEEEESDS 301 (362)
T ss_pred EEEEEecccCCCCcccceeeecceEEEEEEEEEEEEEECCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 99999999888888889999999999999999999999999999999999999999999999999999999876543310
Q ss_pred CCCccCCCCchhhhhhhcccccCCCCCceEEeecCC--ceeEEeecCCCCCHHHHHhhcc
Q 016171 336 GEEASNEKPVSKLILHSLRKTCGLSFPRRVFVPWLA--DTYICDYLQPSETLEVCISKTI 393 (394)
Q Consensus 336 ~~~~s~~~p~~~~~~~~~~~~~~~~lPRRV~vp~~~--~v~~cDYlF~~E~~~d~~~~~~ 393 (394)
..... +.++|||||||||++ +++||||||+||+++|+++|+.
T Consensus 302 --------~~~~~--------~~~~lPrRv~~p~~~~~~v~~cDYlF~~E~~~d~~~~~~ 345 (362)
T PF14778_consen 302 --------SEEEI--------EVHELPRRVFVPWPSSPSVQFCDYLFPDETAEDAVERFK 345 (362)
T ss_pred --------ccccc--------ccccCCceEEEecCCCCceEEEEecCCCCCHHHHHHHHH
Confidence 00111 367899999999997 7999999999999999999973
No 2
>KOG4703 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.6e-46 Score=355.48 Aligned_cols=288 Identities=22% Similarity=0.326 Sum_probs=233.2
Q ss_pred CCCCceEEEEeeecCCCCCccEEEEec-CCCCCcc--cccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHh
Q 016171 22 SGLSAQVGLLIGKLSPTLDRGFIFDFI-PTPQNDA--GEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQV 98 (394)
Q Consensus 22 ~~~~~~~GLLIGq~s~~~~rd~Vv~l~-~TP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qV 98 (394)
.|.+...-+|||.... ..||.++++ +.|---. .+.+ ..++..+..+|+.+||...
T Consensus 4 ~Gi~a~a~Fiigsfc~--~gD~h~A~askcpvh~salee~A--------------------tEkS~mledeWm~d~aErl 61 (431)
T KOG4703|consen 4 GGILALAVFIIGSFCL--AGDFHNALASKCPVHRSALEEFA--------------------TEKSIMLEDEWMFDEAERL 61 (431)
T ss_pred CcceEEEEEeeeehhh--cccHHHHHhhcCcchhHHHHHhh--------------------hhhhHhHHHhhcccHHHHH
Confidence 3556677889999987 889999988 3443321 2211 1224567789999999999
Q ss_pred hhccCcceEEEEEEEEecchhhccchHHHHHHHHHHHhhCCCCcCCCCceEEEEEecCCCeEEEEeeeccCCCCCCCCCc
Q 016171 99 SRMLLGGIKVVGIYVWATDSAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGYSPRRYTCRNCTITSNITSSCLRP 178 (394)
Q Consensus 99 sRMLPGGi~VlGifv~~~~~~~~~~~~~L~~~l~~v~k~~~l~~~~~~e~l~Lhi~~stkk~~Ck~~d~~~~~~~ss~kp 178 (394)
.||||||++|+||.|.+ +||+.||++++.++ |+..||
T Consensus 62 ~RmlpggiHi~giaw~S-----------------------------------------dKK~F~rdr~~H~h--Ksl~Ri 98 (431)
T KOG4703|consen 62 ERMLPGGIHICGIAWAS-----------------------------------------DKKIFCRDRDIHDH--KSLARI 98 (431)
T ss_pred HhhccCceEEEeeeccc-----------------------------------------ccceeeccccccCc--hhhcch
Confidence 99999999999999873 57789999999766 999999
Q ss_pred ceeeec-ccccceeEE-EEEEEeceeeeeeecCC-CCcchHHHHHHHHHHH-----HHHhhccc-------eEEEcCeec
Q 016171 179 CDLKTG-LVLKTLRTF-KCTYNFSLRLPIRLVGA-SNTQTFSDILRQGISV-----HANELRGA-------KAVVDGNFV 243 (394)
Q Consensus 179 adwK~~-~~~~~w~~l-~c~~~~d~~lPl~~~~~-~~~~~l~~~l~~~l~~-----~~~~l~~s-------~~lidG~~~ 243 (394)
+|||+| +..++|.++ .|++.+...+|+....+ .-..|++.+-+++... |++.++++ |.++||++.
T Consensus 99 a~mknQi~~an~ddSisd~mi~iffe~P~sapigaiidvT~~gNdka~k~qfqkleW~k~i~NasarivhnVpldnGqpk 178 (431)
T KOG4703|consen 99 ADMKNQIGLANSDDSISDCMIHIFFEIPLSAPIGAIIDVTLEGNDKAGKTQFQKLEWAKEIENASARIVHNVPLDNGQPK 178 (431)
T ss_pred HhhhccccccccccchhhcEEEEEEecCCCCcccceEEEEeccCccccchhhhHHHHHHHhhcccceeeeeeeccCCCcC
Confidence 999999 789999999 99999999999987432 2336788888888877 99999999 899999999
Q ss_pred cCCCCCC------CCC------------------------------ceEEEEEeecCcCCCccc-ccccceeeEEEEEeE
Q 016171 244 VNDEPCS------TDG------------------------------LHEVELLLPLLNDTSAEA-CSQKDVVGLLILSGS 286 (394)
Q Consensus 244 ~~d~~l~------~~~------------------------------~~~v~ll~p~~~~~~~~~-~~~~~~~g~i~~~G~ 286 (394)
+++++|- +.| ++..++++.++-..+++. +..+.|+|...+.|.
T Consensus 179 D~~~DLl~aqKkf~n~lfQ~ef~l~DgeiRddkeplikdikknkkttieaQLfLNplflD~RelgAiddIaS~mhel~f~ 258 (431)
T KOG4703|consen 179 DEDCDLLEAQKKFSNGLFQAEFHLFDGEIRDDKEPLIKDIKKNKKTTIEAQLFLNPLFLDHRELGAIDDIASGMHELKFA 258 (431)
T ss_pred ccchhHHHHHHhhcCCceeEEEeeccchhccccchhhhhhhhcccceehHhhhhCchhccchhhhhHHHHhccchhhhee
Confidence 8888641 111 123444443232445555 567899999999999
Q ss_pred EEEEEEeCCCCC-HHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCCCCCCCCccCCCCchhhhhhhcccccCCCCCc-e
Q 016171 287 VCSFAFLTPKEP-ISQAFSEIKGDIIMSLQSRLDVICDEVDEDLAPTAGGGEEASNEKPVSKLILHSLRKTCGLSFPR-R 364 (394)
Q Consensus 287 v~~rAyv~~k~~-v~~Ai~aIK~DIirSL~sR~ei~~d~l~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~lPR-R 364 (394)
|.||||+|+-.| |++|++|||+||+|+|++|||||+|+|..++++ ++|++.+.+|+ ||| |
T Consensus 259 ie~RAai~sik~kVKDAiqAiKh~il~nl~aR~ElhfE~lel~Eee----------~k~~s~i~~Hq--------LPrpa 320 (431)
T KOG4703|consen 259 IECRAAIHSIKPKVKDAIQAIKHDILNNLAARCELHFEDLELNEEE----------EKKDSEIEFHQ--------LPRPA 320 (431)
T ss_pred eeeeeecccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc----------cCCCcCceEEe--------cCCcc
Confidence 999999997666 999999999999999999999999999877654 35778888776 999 9
Q ss_pred EEeecCCc-eeEEeecCCCCCHHHHHhhc
Q 016171 365 VFVPWLAD-TYICDYLQPSETLEVCISKT 392 (394)
Q Consensus 365 V~vp~~~~-v~~cDYlF~~E~~~d~~~~~ 392 (394)
+|||.|++ +.+|||+|.+|++||+++++
T Consensus 321 t~Vl~~~paili~Df~FdadnaEdaq~~F 349 (431)
T KOG4703|consen 321 TFVLLPGPAILICDFKFDADNAEDAQDHF 349 (431)
T ss_pred eEEecCCCeEEEeecccCcccHHHHHHHH
Confidence 99999876 99999999999999999986
No 3
>KOG4703 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=0.063 Score=52.80 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=40.4
Q ss_pred ccCcceEEEEEEEEecchhhccchHHHH------H---HHHHHHhhC------CCCcCCCCceEE---EEEe
Q 016171 101 MLLGGIKVVGIYVWATDSAFKNSTIELC------Q---TVNAAAKAV------PILEIDSDERLL---VHIG 154 (394)
Q Consensus 101 MLPGGi~VlGifv~~~~~~~~~~~~~L~------~---~l~~v~k~~------~l~~~~~~e~l~---Lhi~ 154 (394)
|||||+-++|+|++++--...+.++.|+ + ..+++++++ ...+.+..+|++ +|||
T Consensus 1 l~d~Gi~a~a~Fiigsfc~~gD~h~A~askcpvh~salee~AtEkS~mledeWm~d~aErl~RmlpggiHi~ 72 (431)
T KOG4703|consen 1 LLDGGILALAVFIIGSFCLAGDFHNALASKCPVHRSALEEFATEKSIMLEDEWMFDEAERLERMLPGGIHIC 72 (431)
T ss_pred CCCCcceEEEEEeeeehhhcccHHHHHhhcCcchhHHHHHhhhhhhHhHHHhhcccHHHHHHhhccCceEEE
Confidence 8999999999999998755555555554 2 456777777 345567788888 9998
No 4
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic. This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import
Probab=90.71 E-value=5 Score=35.77 Aligned_cols=68 Identities=19% Similarity=0.390 Sum_probs=52.5
Q ss_pred CCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccC
Q 016171 24 LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLL 103 (394)
Q Consensus 24 ~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLP 103 (394)
...++|+|+|.... ..=-|..-.+.|.+++++ ...+|.+|..+=-++-.+.-|
T Consensus 22 ~~~v~G~LlG~~~~--~~veV~nsF~lp~~~~~~-------------------------~~~~d~~y~~~m~~~~~~v~~ 74 (157)
T cd08057 22 IKRVIGVLLGYVDG--DKIEVTNSFELPFDEEEE-------------------------SIFIDTEYLEKRYNLHKKVYP 74 (157)
T ss_pred CCeEEEEEEeEEeC--CEEEEEEeEEccccCCCc-------------------------chhhhHHHHHHHHHHHHHhCC
Confidence 46899999999975 555566777888855432 124788999888888888888
Q ss_pred cceEEEEEEEEecchh
Q 016171 104 GGIKVVGIYVWATDSA 119 (394)
Q Consensus 104 GGi~VlGifv~~~~~~ 119 (394)
...|||-|.+++...
T Consensus 75 -~~~vVGWY~~~~~~~ 89 (157)
T cd08057 75 -QEKIVGWYSIGSNNS 89 (157)
T ss_pred -CCCEEEEEeecCCCC
Confidence 789999999998743
No 5
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=87.99 E-value=11 Score=36.69 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=76.2
Q ss_pred cEEEecCchhHHHHHHHhhCCCCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcc
Q 016171 3 NTVVVEKPQLLSAEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSI 82 (394)
Q Consensus 3 Rtv~~ee~~v~~y~~~l~~~~~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
++|.++...+-+-++-+.+....-++|+|+|.... +.=-|....|.|..+++++. .
T Consensus 1 ~~V~I~~~vllkIv~H~~~~~p~~v~G~LLG~~~~--~~leVtn~Fp~P~~~~~~~~----------------------~ 56 (266)
T cd08065 1 TSVQIDGLVVLKIIKHCKEELPELVQGQLLGLDVG--GTLEVTNCFPFPKSEEDDSD----------------------R 56 (266)
T ss_pred CEEEEeHHHHHHHHHHHhcCCCcEEEEEEeeeEcC--CEEEEEeccCCCCCCCCCcc----------------------h
Confidence 46677766555555555554445799999999975 54566688899987775421 0
Q ss_pred cccCCHHHHHHHHHHhhhccCcceEEEEEEEEecchhhccchHHHHHHHHHHHhhCCCCcCCCCceEEEEEecC---CCe
Q 016171 83 SLVIDKDWIAEHARQVSRMLLGGIKVVGIYVWATDSAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGYS---PRR 159 (394)
Q Consensus 83 ~~~iD~~WVaeHA~qVsRMLPGGi~VlGifv~~~~~~~~~~~~~L~~~l~~v~k~~~l~~~~~~e~l~Lhi~~s---tkk 159 (394)
...+|.++-.+.-+..-+.=| .-.|||.|-.+|-..|.+ ..+....++-.. ...+.+.|-+++. +.+
T Consensus 57 ~~~~~~~yq~~m~~~~r~v~~-~e~iVGWY~S~p~~~~~~--~s~id~~~~~q~-------~~~~~v~Li~D~~~s~~g~ 126 (266)
T cd08065 57 ADEDIADYQLEMMRLLREVNV-DHNHVGWYQSTYLGSFFT--RDLIETQYNYQE-------AIEESVVLVYDPSKTSQGS 126 (266)
T ss_pred hhhhHHHHHHHHHHHHHHhCC-CCcEEEeEeecCCCCcCC--HHHHHHHHHHhc-------cCCCCEEEEECCCcccccc
Confidence 112333443333322222211 339999999999555544 234444444432 2244677777774 455
Q ss_pred EEEEeeec
Q 016171 160 YTCRNCTI 167 (394)
Q Consensus 160 ~~Ck~~d~ 167 (394)
...|.|-.
T Consensus 127 l~lkAyrl 134 (266)
T cd08065 127 LSLKAYRL 134 (266)
T ss_pred eeeEEEEE
Confidence 67776644
No 6
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.
Probab=86.17 E-value=2.1 Score=35.78 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=54.4
Q ss_pred ccEEEecCchhHHHHHHHhhCCCCceEEEEeeecCCCCC-ccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCC
Q 016171 2 VNTVVVEKPQLLSAEDRLSQSGLSAQVGLLIGKLSPTLD-RGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSD 80 (394)
Q Consensus 2 ~Rtv~~ee~~v~~y~~~l~~~~~~~~~GLLIGq~s~~~~-rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
+++|.++...+-+..+-.......-++|+|+|.... . .=.|....+.|..+.++.
T Consensus 3 ~~~V~i~p~vll~i~~h~~r~~~~~v~G~LlG~~~~--~~~v~I~~~f~~p~~~~~~~---------------------- 58 (114)
T PF01398_consen 3 VQTVQIHPLVLLKIIDHATRSSPNEVIGLLLGTQDG--DNTVEITNSFPVPHSESEDD---------------------- 58 (114)
T ss_dssp CEEEEEEHHHHHHHHHHHHHHHCTEEEEEEEEEEET--T-EEEEEEEEEESEEEESSE----------------------
T ss_pred cEEEEECHHHHHHHHHHHhcCCCCEEEEEEEEEecC--ceEEEEEEEEEeeEecCccc----------------------
Confidence 456666666444444443332234689999999976 4 334555557777666542
Q ss_pred cccccCCHHHHHHHHHHhhhccCcceEEEEEEEEecch
Q 016171 81 SISLVIDKDWIAEHARQVSRMLLGGIKVVGIYVWATDS 118 (394)
Q Consensus 81 ~~~~~iD~~WVaeHA~qVsRMLPGGi~VlGifv~~~~~ 118 (394)
....+.++. ..+..-.+++-+-..+||-|-.+|.-
T Consensus 59 --~~~~~~~~~-~~~~~~~~~~~~~~~iVGWY~s~p~~ 93 (114)
T PF01398_consen 59 --CDMDDEDFQ-KKMIELLKKVNPNLEIVGWYHSHPNI 93 (114)
T ss_dssp --EEEECCHHH-HHHHHHHHHCSTTSEEEEEEEEESSS
T ss_pred --cccchhhHH-HHHHhhhccccccceEEEEEEccCCc
Confidence 123444555 44444444443449999999999875
No 7
>smart00232 JAB_MPN JAB/MPN domain. Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.
Probab=80.69 E-value=12 Score=31.46 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=49.1
Q ss_pred hHHHHHHHhhCCCCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHH
Q 016171 12 LLSAEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWI 91 (394)
Q Consensus 12 v~~y~~~l~~~~~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WV 91 (394)
+.+.++.+......-.+|+|+|+... ++-.|....+.|...... ....++.++.
T Consensus 9 ~~~i~~h~~~~~p~e~~G~L~G~~~~--~~~~i~~~~~~p~~~~~~------------------------~~~~~~~~~~ 62 (135)
T smart00232 9 PLNILKHAIRDGPEEVCGVLLGKSNK--DRPEVKEVFAVPNEPQDD------------------------SVQEYDEDYS 62 (135)
T ss_pred HHHHHHHHhcCCCcEEEEEEEEEEcC--CEEEEEEEEecCcCCCCc------------------------chhhhhhhHH
Confidence 44444444443334689999999865 555556666666433221 0113556666
Q ss_pred HHHHHHhhhccCcceEEEEEEEEecc
Q 016171 92 AEHARQVSRMLLGGIKVVGIYVWATD 117 (394)
Q Consensus 92 aeHA~qVsRMLPGGi~VlGifv~~~~ 117 (394)
.+...+.. ...-|..+||.|-..|.
T Consensus 63 ~~~~~~~~-~~~~~~~~vGwyhshp~ 87 (135)
T smart00232 63 HLMDEELK-KVNKDLEIVGWYHSHPD 87 (135)
T ss_pred HHHHHHHH-hhCCCceEEEEEEcCCC
Confidence 66655543 36678899999999986
No 8
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=80.43 E-value=12 Score=34.57 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=56.0
Q ss_pred CceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccCc
Q 016171 25 SAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLLG 104 (394)
Q Consensus 25 ~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLPG 104 (394)
.-+.|||+|+... ++.-.|+..+|.+..--. + .....|...-|-.||++-
T Consensus 19 ~evcGlLlG~~~~-~~~~~V~d~vPl~h~~~~-----l------------------~P~~Eval~~ve~~~~~~------ 68 (182)
T cd08060 19 CAVNGLLLGKKSS-GGSVEITDAVPLFHSCLA-----L------------------APMLEVALALVDAYCKSS------ 68 (182)
T ss_pred chheEEEEeeecC-CCCEEEEEEEEcCCCccc-----c------------------CHHHHHHHHHHHHHHHHC------
Confidence 3799999999863 255688899887652110 0 012334556677778773
Q ss_pred ceEEEEEEEEecchhhccchHHHHHHHHHHHhhCCCCcCCCCceEEEEEe
Q 016171 105 GIKVVGIYVWATDSAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIG 154 (394)
Q Consensus 105 Gi~VlGifv~~~~~~~~~~~~~L~~~l~~v~k~~~l~~~~~~e~l~Lhi~ 154 (394)
|+.|+|+|-..|.-.=......-.++..+|.+.. +.-++|.|+
T Consensus 69 gl~IvG~Yhsh~~~~d~~~~~~a~kIadki~~~~-------~~a~ll~vd 111 (182)
T cd08060 69 GLVIVGYYQANERLDDSSPSPVAKKIADKIAENF-------SNACLLMVD 111 (182)
T ss_pred CCEEEEEEecCCcccCCCCcHHHHHHHHHHHHhC-------CCCEEEEEe
Confidence 9999999998776331122233344555554322 355566555
No 9
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5. This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i
Probab=79.29 E-value=47 Score=32.54 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=66.8
Q ss_pred cEEEecCchhHHHHHHHhhCCCCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcc
Q 016171 3 NTVVVEKPQLLSAEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSI 82 (394)
Q Consensus 3 Rtv~~ee~~v~~y~~~l~~~~~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
++|.++...+.+.+.-..+....-++|+|+|.... +.-.|....|.|....+...
T Consensus 10 ~~V~Is~~allkil~Ha~~~~p~Ev~GlLlG~~~~--~~v~Vt~~fp~p~~~t~~~v----------------------- 64 (268)
T cd08069 10 EKVYISSLALLKMLKHARAGGPIEVMGLMLGKVDD--YTIIVVDVFALPVEGTETRV----------------------- 64 (268)
T ss_pred cEEEECHHHHHHHHHHHhccCCceEEEEEEeeecC--CeEEEEEEEECCcCCCCCce-----------------------
Confidence 46666666566656555443334789999999654 55567788898854443211
Q ss_pred cccCCH---HHHHHHHHHhhhccCcceEEEEEEEEecc-hhhccchHHHHHHHHHHHhhCCCCcCCCCceEEEEEec
Q 016171 83 SLVIDK---DWIAEHARQVSRMLLGGIKVVGIYVWATD-SAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGY 155 (394)
Q Consensus 83 ~~~iD~---~WVaeHA~qVsRMLPGGi~VlGifv~~~~-~~~~~~~~~L~~~l~~v~k~~~l~~~~~~e~l~Lhi~~ 155 (394)
..+. +-+.++ +..|+.-=|..|||.|=.+|. ..|-+...+..|..+.- ...+.|.|-|++
T Consensus 65 --~~~~e~~~~m~~~--~~~~~~~~~~~vVGWYHSHP~~g~~~S~~Dv~tq~~yq~---------~~~~~V~lViDP 128 (268)
T cd08069 65 --NAQDEFQEYMVQY--EMLKQTGRPENVVGWYHSHPGYGCWLSGIDVNTQQLNQQ---------LQDPFVAVVVDP 128 (268)
T ss_pred --eccHHHHHHHHHH--HHHHHhCCCceeEeeeccCCCcCCcCCHHHHHHHHHHHh---------cCCCcEEEEEeC
Confidence 1222 233331 233444446899999999994 44444444444443322 124467777875
No 10
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme. This family contains only archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=76.24 E-value=22 Score=30.33 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=17.6
Q ss_pred ccCcceEEEEEEEEecchhhc
Q 016171 101 MLLGGIKVVGIYVWATDSAFK 121 (394)
Q Consensus 101 MLPGGi~VlGifv~~~~~~~~ 121 (394)
|++-|+.|+|+|-..|.....
T Consensus 54 ~~~~g~~ivgi~HSHP~~~~~ 74 (117)
T cd08072 54 MLPLDMSIVGSVHSHPSGSPR 74 (117)
T ss_pred HhcCCCeEEEEEEcCCCCCCC
Confidence 678899999999999975443
No 11
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6. CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav
Probab=74.43 E-value=50 Score=32.57 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=51.2
Q ss_pred CCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccC
Q 016171 24 LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLL 103 (394)
Q Consensus 24 ~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLP 103 (394)
...++|.|+|.... ..=-|..-.+-|..+++. + ...+|.+|..+=-.|--+.-|
T Consensus 28 ~~~v~G~LLG~~~~--~~veItnsF~~p~~~~~~-~-----------------------~~~id~~y~~~m~~~~kkV~~ 81 (288)
T cd08063 28 PPRVVGALLGQQDG--REIEIENSFELKYDTNED-G-----------------------EIVLDKEFLETRLEQFKQVFK 81 (288)
T ss_pred CCcEEEEEEEEEcC--CEEEEEEEEecccccCCC-C-----------------------ceeeCHHHHHHHHHHHHHhcc
Confidence 36799999998754 433344556777765541 0 135899998888888888888
Q ss_pred cceEEEEEEEEecchhhc
Q 016171 104 GGIKVVGIYVWATDSAFK 121 (394)
Q Consensus 104 GGi~VlGifv~~~~~~~~ 121 (394)
. ..|||-|..++...+.
T Consensus 82 ~-~~vVGWY~tg~~~~~~ 98 (288)
T cd08063 82 D-LDFVGWYTTGPGGPTE 98 (288)
T ss_pred C-CceEEEEecCCCCCCH
Confidence 8 8999999999884333
No 12
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function.
Probab=66.11 E-value=63 Score=30.25 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=64.9
Q ss_pred CccEEEecCchhHHHHHHHhhCCCCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCC
Q 016171 1 MVNTVVVEKPQLLSAEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSD 80 (394)
Q Consensus 1 M~Rtv~~ee~~v~~y~~~l~~~~~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
|..-.+-..++++-.+=.+ +.....+.|+|||+.+...++=.|+..+|-=..... -
T Consensus 1 m~~v~is~~AY~K~~LHaa-KyP~~aVnGvLlg~~~~~~~~v~i~DaVPLfH~~~~-----------------------L 56 (196)
T PF03665_consen 1 MSSVEISSRAYAKMILHAA-KYPHCAVNGVLLGKSSKSSSEVEIVDAVPLFHHWLS-----------------------L 56 (196)
T ss_pred CceEEEcHHHHHHHHHHhc-cCCCCceeeEEEeccCCCCceEEEeeceeccccccC-----------------------c
Confidence 4444444445333333332 334578999999998763223677777763221110 0
Q ss_pred cccccCCHHHHHHHHHHhhhccCcceEEEEEEEEecchhhccchHHHHHHHHHHHhhCCCCcCCCCceEEEEEecCC
Q 016171 81 SISLVIDKDWIAEHARQVSRMLLGGIKVVGIYVWATDSAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGYSP 157 (394)
Q Consensus 81 ~~~~~iD~~WVaeHA~qVsRMLPGGi~VlGifv~~~~~~~~~~~~~L~~~l~~v~k~~~l~~~~~~e~l~Lhi~~st 157 (394)
....+|--.-|-.||++ .|+.|+|.|--...-.=......-.++-..|.. ..++-++|.|+.+.
T Consensus 57 ~PmlEvAL~qvd~~~~~------~gl~IvGyY~Ane~~~d~~~~~~a~kiad~I~~-------~~~~a~ll~idn~k 120 (196)
T PF03665_consen 57 SPMLEVALAQVDAYAKS------NGLVIVGYYQANERLDDNSPSPVAEKIADKIAE-------NFSDACLLMIDNKK 120 (196)
T ss_pred chHHHHHHHHHHHHHhh------CCCEEEEEEEeccccccCCCCHHHHHHHHHHHh-------hCCCcEEEEEECcc
Confidence 11334555667888875 689999999875421001112223444445543 34566777776443
No 13
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8. This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.
Probab=62.57 E-value=32 Score=33.97 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=50.3
Q ss_pred CCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccC
Q 016171 24 LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLL 103 (394)
Q Consensus 24 ~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLP 103 (394)
...++|.|+|+... ..=-|....+.|.+++++.. ..-.+|.+|..+--.+--+.-|
T Consensus 25 ~~~ViG~LLG~~~~--~~veItnsF~~p~~~~~~~~----------------------~~~~~d~~y~~~m~~~~kkv~~ 80 (280)
T cd08062 25 SKRVVGVLLGSWKK--GVLDVTNSFAVPFEEDEKDP----------------------SVWFLDHNYLENMYGMFKKVNA 80 (280)
T ss_pred CceEEEEEEEEEeC--CEEEEEEeeecCccCCCCCc----------------------chhhhhHHHHHHHHHHHHHhCC
Confidence 46799999999965 44445567788886554310 1235889998887777777777
Q ss_pred cceEEEEEEEEecc
Q 016171 104 GGIKVVGIYVWATD 117 (394)
Q Consensus 104 GGi~VlGifv~~~~ 117 (394)
. ..|||-|-.+|.
T Consensus 81 ~-e~vVGWY~tg~~ 93 (280)
T cd08062 81 K-EKIVGWYSTGPK 93 (280)
T ss_pred C-CCeEEEecCCCC
Confidence 6 899999999876
No 14
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=53.78 E-value=50 Score=28.15 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=38.1
Q ss_pred ceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccCcc
Q 016171 26 AQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLLGG 105 (394)
Q Consensus 26 ~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLPGG 105 (394)
=++|||+|.... +.-.|....|.|...++.. .--.+|.+......+.. -.-|
T Consensus 18 E~cGlL~G~~~~--~~~~i~~~~p~~n~~~~~~-----------------------~~f~~d~~~~~~~~~~~---~~~g 69 (128)
T cd08070 18 ECCGLLLGKGGG--VTAIVTEVYPVRNVAESPR-----------------------RRFEIDPAEQLAAQREA---RERG 69 (128)
T ss_pred ceEEEEEeecCC--CCceEEEEEEccCCCCCCC-----------------------ceEEECHHHHHHHHHHH---HHCC
Confidence 578999999865 5445545555443222110 01245654333322222 2448
Q ss_pred eEEEEEEEEecchh
Q 016171 106 IKVVGIYVWATDSA 119 (394)
Q Consensus 106 i~VlGifv~~~~~~ 119 (394)
+.|+|+|=..|...
T Consensus 70 ~~~vG~~HSHP~~~ 83 (128)
T cd08070 70 LEVVGIYHSHPDGP 83 (128)
T ss_pred CeEEEEEeCCCCCC
Confidence 99999999999853
No 15
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J
Probab=45.45 E-value=1.2e+02 Score=24.54 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=18.2
Q ss_pred hccCcceEEEEEEEEecchh-hccchH
Q 016171 100 RMLLGGIKVVGIYVWATDSA-FKNSTI 125 (394)
Q Consensus 100 RMLPGGi~VlGifv~~~~~~-~~~~~~ 125 (394)
++..=|+.+||.|-..|... +.+.+.
T Consensus 57 ~~~~~~~~iVGwyhshp~~~~~~s~~d 83 (116)
T cd07767 57 KKLNAGLRIVGWYHTHPKPSCFLSPND 83 (116)
T ss_pred HHhcCCCeEEEEEEcCCCCCCccCHHH
Confidence 44556999999999988753 344333
No 16
>PLN03246 26S proteasome regulatory subunit; Provisional
Probab=40.32 E-value=1.3e+02 Score=30.27 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=48.9
Q ss_pred CCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccC
Q 016171 24 LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLL 103 (394)
Q Consensus 24 ~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLP 103 (394)
...++|.|+|+... ..=-|-+..+.|.+++++.. ..-.+|.+|..+--++--+.-|
T Consensus 30 ~~rviG~LLG~~~~--~~ieItnsF~~p~~e~~~~~----------------------~~~~~D~~y~~~m~~~~k~V~~ 85 (303)
T PLN03246 30 RKRVVGVLLGSSFR--GRVDVTNSFAVPFEEDDKDP----------------------SIWFLDHNYLESMFGMFKRINA 85 (303)
T ss_pred CCeeEEEEEeeecC--CEEEEEeccccCcccCCCCc----------------------cceeecHHHHHHHHHHHHHhCC
Confidence 36799999999864 44445556688875443210 1235889998888777777777
Q ss_pred cceEEEEEEEEecc
Q 016171 104 GGIKVVGIYVWATD 117 (394)
Q Consensus 104 GGi~VlGifv~~~~ 117 (394)
.= .|||-|-.+++
T Consensus 86 ~~-~vVGWY~tg~~ 98 (303)
T PLN03246 86 KE-HVVGWYSTGPK 98 (303)
T ss_pred CC-cEEeeecCCCC
Confidence 64 99999998876
No 17
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=29.64 E-value=4.6e+02 Score=24.29 Aligned_cols=101 Identities=16% Similarity=0.031 Sum_probs=51.2
Q ss_pred CceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccCc
Q 016171 25 SAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLLG 104 (394)
Q Consensus 25 ~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLPG 104 (394)
.=++|||+|........-.|..+.|.|...... -.++|.+...+--+.. --=
T Consensus 26 ~EvcGlL~G~~d~~~~~l~Vt~~~p~~~~~~~~-------------------------~~e~dp~~q~e~~~~l---~~~ 77 (187)
T cd08067 26 SEVIGYLGGTWDPNTQNLTILQAFPCRSRLTGL-------------------------DCEMDPVSETEIRESL---ESR 77 (187)
T ss_pred cEEEEEEEeEEcCCCCeEEEEEEEecCCCCCCc-------------------------ccccCHHHHHHHHHHH---HHc
Confidence 568999999964311223455555666543311 0134443333211111 134
Q ss_pred ceEEEEEEEEecchhhc-cchHHHHHHHHHHHhhCCCCcCCCCceEEEEEec
Q 016171 105 GIKVVGIYVWATDSAFK-NSTIELCQTVNAAAKAVPILEIDSDERLLVHIGY 155 (394)
Q Consensus 105 Gi~VlGifv~~~~~~~~-~~~~~L~~~l~~v~k~~~l~~~~~~e~l~Lhi~~ 155 (394)
|+.|||.|=..|..... ....+..|..+.. .+.-++....+.|-|-+++
T Consensus 78 gl~vVGwYHSHP~~~~~pS~~Di~tQ~~yQ~--~~~~~~~~~~p~v~~I~~P 127 (187)
T cd08067 78 GLSVVGWYHSHPTFPPNPSLRDIDTQLDYQI--MFKGSDSGYEPCVGLICSP 127 (187)
T ss_pred CCEEEEEEecCCCCCcCCCHHHHHHHHHHHh--hccccccCCCCeEEEEEcc
Confidence 68999999999975422 2223333332222 2221234456667777766
No 18
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=28.71 E-value=3.5e+02 Score=26.35 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=24.5
Q ss_pred ccCCHHHHHHHHHHhhh---ccCcceEEEEEEEEecch
Q 016171 84 LVIDKDWIAEHARQVSR---MLLGGIKVVGIYVWATDS 118 (394)
Q Consensus 84 ~~iD~~WVaeHA~qVsR---MLPGGi~VlGifv~~~~~ 118 (394)
-.+|.+=.....+++.+ +.==|+.|+|+|=..|.-
T Consensus 64 ~eidPee~~~a~~ea~~~~~~~~rgl~vVGwYHSHP~~ 101 (244)
T cd08068 64 VEISPEQLSAASTEAERLTEETGRPMRVVGWYHSHPHI 101 (244)
T ss_pred EEeCHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCC
Confidence 35777766555555555 444689999999999973
No 19
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, al
Probab=27.24 E-value=4.8e+02 Score=23.78 Aligned_cols=34 Identities=29% Similarity=0.269 Sum_probs=21.7
Q ss_pred cEEEecCchhHHHHHHHhhCCCC---ceEEEEeeecCC
Q 016171 3 NTVVVEKPQLLSAEDRLSQSGLS---AQVGLLIGKLSP 37 (394)
Q Consensus 3 Rtv~~ee~~v~~y~~~l~~~~~~---~~~GLLIGq~s~ 37 (394)
|.++..+..++++++--.. ..+ =++|||+|+...
T Consensus 2 ~~l~Ipk~il~~~l~~A~~-~~~~p~E~cGlL~G~~~~ 38 (173)
T cd08066 2 RQVVVPADLMDKFLQLAEP-NTSRNLETCGILCGKLSN 38 (173)
T ss_pred eEEEECHHHHHHHHHHHHh-CCCCCCeEEEEEEeEcCC
Confidence 5667777756665554333 211 478999999754
No 20
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f. Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap
Probab=27.20 E-value=2.3e+02 Score=27.50 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=45.2
Q ss_pred CCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccC
Q 016171 24 LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLL 103 (394)
Q Consensus 24 ~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLP 103 (394)
..-++|.|+|.... +.=-|-+..+.|.+++++. ..+|.+|..+--++--+.-|
T Consensus 22 ~~~V~G~LLG~~~~--~~veItnsF~~p~~~~~~~-------------------------~~~d~~y~~~m~~~~kkv~~ 74 (265)
T cd08064 22 QERVIGTLLGTRSE--GEVEITNCFAVPHNESEDQ-------------------------VAVDMEYHRTMYELHQKVNP 74 (265)
T ss_pred CcEEEEEEEEEEeC--CEEEEEeCeecceeCCCCe-------------------------EEEcHHHHHHHHHHHHHhCC
Confidence 36799999999965 4444456678888665431 24777777655555444445
Q ss_pred cceEEEEEEEEecc
Q 016171 104 GGIKVVGIYVWATD 117 (394)
Q Consensus 104 GGi~VlGifv~~~~ 117 (394)
. ..|||-|-.++.
T Consensus 75 ~-~~vVGWY~tg~~ 87 (265)
T cd08064 75 K-EVIVGWYATGSE 87 (265)
T ss_pred C-CcEEeeeeCCCC
Confidence 4 699999999873
No 21
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=25.17 E-value=3.5e+02 Score=22.54 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=19.1
Q ss_pred hhccCcceEEEEEEEEecc-hhhccchH
Q 016171 99 SRMLLGGIKVVGIYVWATD-SAFKNSTI 125 (394)
Q Consensus 99 sRMLPGGi~VlGifv~~~~-~~~~~~~~ 125 (394)
.++.-=|+.+||+|=.+|. ..+-+...
T Consensus 58 ~~~~~~g~~~vG~YHSHP~~~~~pS~~D 85 (119)
T cd08058 58 NVQTGRPLLVVGWYHSHPTFTAWLSSVD 85 (119)
T ss_pred HHHhCCCCeEEEEEecCCCCCCccCHHH
Confidence 3556669999999999994 44544333
No 22
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family. This uncharacterized protein is found in several Proteobacteria, among them Rhizobium sp. NGR234, Vibrio cholerae, Myxococcus xanthus, and E. coli strain ECOR31. In the latter, it is part of an integrative and conjugative element that is readily induced to excise and circularize.
Probab=24.59 E-value=3.5e+02 Score=23.82 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=47.8
Q ss_pred ceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccCcc
Q 016171 26 AQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLLGG 105 (394)
Q Consensus 26 ~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLPGG 105 (394)
=.-|+|+|.... + +++|..+-+|.+++-... ....-+.++.++-....-+.=-|.
T Consensus 18 EtGGiLiG~~~~--~-~~ii~~~t~P~p~d~~tr----------------------~~F~r~~~~~q~~i~~~~~~s~g~ 72 (131)
T TIGR02256 18 ETGGVLIGERRG--A-HAVITKISEPGSGDIRTR----------------------KRFSRDGEHHQSEVDEHFEVSGGV 72 (131)
T ss_pred ccceEEEEEEcC--C-cEEEEEEEcCCCCcccCc----------------------eEEEeCcHHHHHHHHHHHHHhCCc
Confidence 477999999875 5 666666656654432100 012333444333333333333466
Q ss_pred eEEEEEEEEecchhhccchHHHHHHHHHHHh
Q 016171 106 IKVVGIYVWATDSAFKNSTIELCQTVNAAAK 136 (394)
Q Consensus 106 i~VlGifv~~~~~~~~~~~~~L~~~l~~v~k 136 (394)
+..||-.=..|...- .+...-...++.+.+
T Consensus 73 ~~ylGeWHtHP~~~p-~PS~~D~~~~~~~~~ 102 (131)
T TIGR02256 73 DTYLGEWHTHPEDQP-EPSWTDRRSWRTIIR 102 (131)
T ss_pred eEEEEecCcCCCCCC-CCCHHHHHHHHHHHh
Confidence 999999888887643 333344555555544
No 23
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=22.17 E-value=44 Score=30.69 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=42.4
Q ss_pred EEEecCchhHHHHHHHhhCCCCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCccc
Q 016171 4 TVVVEKPQLLSAEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSIS 83 (394)
Q Consensus 4 tv~~ee~~v~~y~~~l~~~~~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (394)
..+.|.. +++++.+..+.+ .+....=+-.-.. +-|+++..+|||...+.
T Consensus 44 ~p~~E~~-l~~ll~~~~~~~-~l~~t~~~~~ai~--~adv~~I~VpTP~~~~~--------------------------- 92 (185)
T PF03721_consen 44 LPIYEPG-LDELLKENVSAG-RLRATTDIEEAIK--DADVVFICVPTPSDEDG--------------------------- 92 (185)
T ss_dssp SSS-CTT-HHHHHHHHHHTT-SEEEESEHHHHHH--H-SEEEE----EBETTT---------------------------
T ss_pred ccccccc-hhhhhccccccc-cchhhhhhhhhhh--ccceEEEecCCCccccC---------------------------
Confidence 3345566 777777766543 3333322222122 46899999999988743
Q ss_pred ccCCHHHHHHHHHHhhhccCcceEE
Q 016171 84 LVIDKDWIAEHARQVSRMLLGGIKV 108 (394)
Q Consensus 84 ~~iD~~WVaeHA~qVsRMLPGGi~V 108 (394)
..|-.+|.+-++++.+.|..|-.|
T Consensus 93 -~~Dls~v~~a~~~i~~~l~~~~lv 116 (185)
T PF03721_consen 93 -SPDLSYVESAIESIAPVLRPGDLV 116 (185)
T ss_dssp -SBETHHHHHHHHHHHHHHCSCEEE
T ss_pred -CccHHHHHHHHHHHHHHHhhcceE
Confidence 245688999999999988885443
No 24
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=21.94 E-value=1.7e+02 Score=31.15 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=35.3
Q ss_pred CccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccCcceEEE
Q 016171 40 DRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLLGGIKVV 109 (394)
Q Consensus 40 ~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLPGGi~Vl 109 (394)
.-|+++..++||..+++.++ ....|..+|.+-++++.+.|..|-.|+
T Consensus 78 ~advi~I~V~TP~~~~g~~~-----------------------~~~~Dls~v~~a~~~i~~~l~~~~lVv 124 (473)
T PLN02353 78 EADIVFVSVNTPTKTRGLGA-----------------------GKAADLTYWESAARMIADVSKSDKIVV 124 (473)
T ss_pred cCCEEEEEeCCCCCCCCCcC-----------------------CCCCcHHHHHHHHHHHHhhCCCCcEEE
Confidence 56899999999975543210 124677999999999999999987543
No 25
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=21.14 E-value=58 Score=26.92 Aligned_cols=16 Identities=38% Similarity=0.916 Sum_probs=12.7
Q ss_pred cCCHHHHHHHHHHhhh
Q 016171 85 VIDKDWIAEHARQVSR 100 (394)
Q Consensus 85 ~iD~~WVaeHA~qVsR 100 (394)
-||.+||.+|..++.-
T Consensus 73 ~id~~wi~~~~~~i~~ 88 (90)
T PF09904_consen 73 PIDRKWIADHLQEIKA 88 (90)
T ss_dssp TB-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4899999999998753
No 26
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=20.86 E-value=1.3e+02 Score=31.41 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=48.0
Q ss_pred cEEEecCchhHHHHHHHhhCC-CCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCc
Q 016171 3 NTVVVEKPQLLSAEDRLSQSG-LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDS 81 (394)
Q Consensus 3 Rtv~~ee~~v~~y~~~l~~~~-~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (394)
+.=|+|.. |++++.+-...| ..|++=.=-+-. +-|+++.+++||+++++
T Consensus 43 ~~PI~Epg-Le~ll~~~~~~gRl~fTtd~~~a~~----~adv~fIavgTP~~~dg------------------------- 92 (414)
T COG1004 43 ISPIYEPG-LEELLKENLASGRLRFTTDYEEAVK----DADVVFIAVGTPPDEDG------------------------- 92 (414)
T ss_pred CCCCcCcc-HHHHHHhccccCcEEEEcCHHHHHh----cCCEEEEEcCCCCCCCC-------------------------
Confidence 33466777 777776644433 223332222222 45899999999999842
Q ss_pred ccccCCHHHHHHHHHHhhhccCcc
Q 016171 82 ISLVIDKDWIAEHARQVSRMLLGG 105 (394)
Q Consensus 82 ~~~~iD~~WVaeHA~qVsRMLPGG 105 (394)
.+|-..|-.-|+.+..-|+|-
T Consensus 93 ---~aDl~~V~ava~~i~~~~~~~ 113 (414)
T COG1004 93 ---SADLSYVEAVAKDIGEILDGK 113 (414)
T ss_pred ---CccHHHHHHHHHHHHhhcCCC
Confidence 467789999999999999997
Done!