Query 016171
Match_columns 394
No_of_seqs 95 out of 104
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o95_A 26S proteasome non-ATPa 71.8 11 0.00038 33.1 7.6 70 24-118 33-102 (187)
2 4b4t_V 26S proteasome regulato 70.5 27 0.00093 33.4 10.6 114 3-155 25-143 (306)
3 4e0q_A COP9 signalosome comple 66.5 10 0.00035 32.2 6.0 65 25-117 33-97 (141)
4 2kks_A Uncharacterized protein 58.9 41 0.0014 28.1 8.4 78 12-118 9-86 (146)
5 4b4t_U RPN8, 26S proteasome re 58.6 23 0.0008 34.3 7.6 78 15-117 21-98 (338)
6 3bbz_A P protein, phosphoprote 52.7 8.7 0.0003 27.2 2.4 16 298-313 32-47 (49)
7 1yyp_B DNA polymerase, POL; pr 38.3 9.6 0.00033 23.4 0.7 10 361-370 1-10 (26)
8 1oi0_A AF2198, hypothetical pr 37.3 55 0.0019 26.6 5.5 20 100-119 57-76 (124)
9 3rzv_A STAM-binding protein; u 31.2 62 0.0021 29.4 5.3 118 3-161 42-162 (211)
10 2znr_A AMSH-like protease; met 29.3 78 0.0027 27.7 5.5 84 3-118 9-94 (178)
11 2kcq_A MOV34/MPN/PAD-1 family; 25.0 1.1E+02 0.0036 25.8 5.4 27 26-53 22-48 (153)
12 1uf2_K Structural protein P7; 23.2 27 0.00091 35.1 1.3 33 86-118 314-358 (506)
13 2r32_A GCN4-PII/tumor necrosis 20.3 59 0.002 28.2 2.7 69 173-262 41-109 (166)
No 1
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=71.78 E-value=11 Score=33.08 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=45.5
Q ss_pred CCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccC
Q 016171 24 LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLL 103 (394)
Q Consensus 24 ~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLP 103 (394)
..-++|+|+|+... +.=.|....|.|..+.+... ....+|.++..+.-++--+.=|
T Consensus 33 ~~~V~G~LLG~~~~--~~v~V~~~f~lp~~~~~~~~----------------------~~~~~d~ey~~~m~~~~~~v~~ 88 (187)
T 2o95_A 33 QKRVVGVLLGSWQK--KVLDVSNSFAVPFDEDDKDD----------------------SVWFLDHDYLENMYGMFKKVNA 88 (187)
T ss_dssp CSCCEEEEEEEESS--SEEEEEEEEEECEEECSSCT----------------------TSEEECHHHHHHHHHHHHTTSS
T ss_pred CcEEEEEEEEEEcC--CEEEEEEEEEeCCcccCCCc----------------------chhhcCHHHHHHHHHHHHHhCC
Confidence 35799999999965 55556777788876443200 0225777776654333322222
Q ss_pred cceEEEEEEEEecch
Q 016171 104 GGIKVVGIYVWATDS 118 (394)
Q Consensus 104 GGi~VlGifv~~~~~ 118 (394)
+..|||-|-.+|.-
T Consensus 89 -~~~iVGWY~s~~~~ 102 (187)
T 2o95_A 89 -RERIVGWYHTGPKL 102 (187)
T ss_dssp -SCEEEEEEECCSSC
T ss_pred -CCCEEEEEcCCCcC
Confidence 79999999988764
No 2
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.51 E-value=27 Score=33.44 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=65.1
Q ss_pred cEEEecCchhHHHHHHHhhCCCCceEEEEeeecCCCCCcc-EEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCc
Q 016171 3 NTVVVEKPQLLSAEDRLSQSGLSAQVGLLIGKLSPTLDRG-FIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDS 81 (394)
Q Consensus 3 Rtv~~ee~~v~~y~~~l~~~~~~~~~GLLIGq~s~~~~rd-~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (394)
.+|.++--.|-+-+.-.......-++|+|+|.... ++. .|.+..+.|..+++..
T Consensus 25 ~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~--~~~v~Vt~~f~~P~~~~~~~----------------------- 79 (306)
T 4b4t_V 25 ETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVD--DYTVNVVDVFAMPQSGTGVS----------------------- 79 (306)
T ss_dssp CEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEET--TTEEEEEEEECCCCEESSSC-----------------------
T ss_pred CEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcC--CeEEEEEEEEeCCcCCCCCc-----------------------
Confidence 35555554333333333322223689999999765 443 3666778887655431
Q ss_pred ccccCCHHH---HHHHHHHhhhccCcceEEEEEEEEecc-hhhccchHHHHHHHHHHHhhCCCCcCCCCceEEEEEec
Q 016171 82 ISLVIDKDW---IAEHARQVSRMLLGGIKVVGIYVWATD-SAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGY 155 (394)
Q Consensus 82 ~~~~iD~~W---VaeHA~qVsRMLPGGi~VlGifv~~~~-~~~~~~~~~L~~~l~~v~k~~~l~~~~~~e~l~Lhi~~ 155 (394)
...+|.++ +.++.++|.| ...|||-|-.+|. ..|-+...+-.|..+.-. ...-+.|-|++
T Consensus 80 -v~~~d~~y~~~m~~~~~~v~~----~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~---------~~~~V~lV~Dp 143 (306)
T 4b4t_V 80 -VEAVDDVFQAKMMDMLKQTGR----DQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQL---------NSRAVAVVVDP 143 (306)
T ss_dssp -EECCCHHHHHHHHHHHHHHSC----CCCCSEEEEECCSSSCCCCHHHHHHHHHHHHH---------CSSCEEEEECS
T ss_pred -hhcCCHHHHHHHHHHHHHhCC----CcceeeEEecCCCCCCcCCHHHHHHHHHHHhc---------CCCcEEEEECC
Confidence 22355665 4456667766 4579999999986 445443333333333221 23457777776
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=66.45 E-value=10 Score=32.21 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=47.2
Q ss_pred CceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccCc
Q 016171 25 SAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLLG 104 (394)
Q Consensus 25 ~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeHA~qVsRMLPG 104 (394)
..++|+|+|+... ..=-|....+-|.+++++. -.+|.+|..+--++--+.-|
T Consensus 33 ~~V~G~LLG~~~~--~~veV~nsF~~p~~~~~~~-------------------------~~~d~~y~~~m~~~~k~v~~- 84 (141)
T 4e0q_A 33 RQVYGALIGKQKG--RNIEIMNSFELKTDVIGDE-------------------------TVINKDYYNKKEQQYKQVFS- 84 (141)
T ss_dssp CEEEEEEEEEEET--TEEEEEEEEECCEEEETTE-------------------------EEECHHHHHHHHHHHHHHST-
T ss_pred cEEEEEEEEEEeC--CEEEEEEEEEecccCCCCc-------------------------eeecHHHHHHHHHHHHHhCC-
Confidence 5799999999864 4445556668887554321 25788998887777666666
Q ss_pred ceEEEEEEEEecc
Q 016171 105 GIKVVGIYVWATD 117 (394)
Q Consensus 105 Gi~VlGifv~~~~ 117 (394)
...|||-|-.+|.
T Consensus 85 ~e~iVGWY~s~~~ 97 (141)
T 4e0q_A 85 DLDFIGWYTTGDN 97 (141)
T ss_dssp TCEEEEEEEEEC-
T ss_pred CccEEEEEeCCCC
Confidence 4999999999874
No 4
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=58.93 E-value=41 Score=28.14 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=45.6
Q ss_pred hHHHHHHHhhCCCCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHH
Q 016171 12 LLSAEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWI 91 (394)
Q Consensus 12 v~~y~~~l~~~~~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WV 91 (394)
+.+.+.-.....-.=++|||+|+... +...|..++|.|...... . --.+|.+-.
T Consensus 9 l~~i~~ha~~~~p~E~cGlL~G~~~~--~~~~v~~~~p~~n~~~~~-----------------------~-~f~~dp~~~ 62 (146)
T 2kks_A 9 MEEMLAHARQALPNEACGLLGGRRDG--DDRWVERVYPLNNLDQSP-----------------------E-HFSMDPREQ 62 (146)
T ss_dssp HHHHHHHHHHHTTSCEEEEEEEEEET--TEEEEEEEECCCCCSCCS-----------------------S-SCCCCHHHH
T ss_pred HHHHHHHHHhcCCcceEEEEEEEEcC--CCcEEEEEEECCCcCCCC-----------------------c-eEEECHHHH
Confidence 44444443332223589999999865 556777788877332211 0 123554433
Q ss_pred HHHHHHhhhccCcceEEEEEEEEecch
Q 016171 92 AEHARQVSRMLLGGIKVVGIYVWATDS 118 (394)
Q Consensus 92 aeHA~qVsRMLPGGi~VlGifv~~~~~ 118 (394)
.+-. -.|..-|+.|+|+|=..|..
T Consensus 63 ~~~~---~~~~~~g~~ivG~~HSHP~~ 86 (146)
T 2kks_A 63 LTAV---KDMRKNGWVMLGNFHSHPAT 86 (146)
T ss_dssp HHHH---HHHHHHTCEEEEEEEEESSS
T ss_pred HHHH---HHHHHCCCEEEEEEeCCCcC
Confidence 2222 22335689999999999974
No 5
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.55 E-value=23 Score=34.32 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=47.6
Q ss_pred HHHHHhhCCCCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHH
Q 016171 15 AEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEH 94 (394)
Q Consensus 15 y~~~l~~~~~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~WVaeH 94 (394)
+..+-......-++|.|+|+..+ ..=-|.+..+.|-++++.+. ....+|.+|..+-
T Consensus 21 H~~R~~~~~~~rViG~LLG~~~~--~~veV~nsF~~p~~e~~~~~----------------------~~~~~D~~y~~~m 76 (338)
T 4b4t_U 21 HYERTQTKENKRCVGVILGDANS--STIRVTNSFALPFEEDEKNS----------------------DVWFLDHNYIENM 76 (338)
T ss_dssp HHHHHTTTCCSCCEEEEEEEECS--SEEEEEEEEECCEEECSSST----------------------TCEEECHHHHHHH
T ss_pred HHHHhhcCCCCeEEEEEEeEEcC--CEEEEEEEEEeccccCCCCC----------------------ccccccHHHHHHH
Confidence 34443333345799999999754 43345555677866554311 1235788887654
Q ss_pred HHHhhhccCcceEEEEEEEEecc
Q 016171 95 ARQVSRMLLGGIKVVGIYVWATD 117 (394)
Q Consensus 95 A~qVsRMLPGGi~VlGifv~~~~ 117 (394)
-.+--+.-|- ..|||-|-.++.
T Consensus 77 ~~~~kkV~~~-e~iVGWY~tg~~ 98 (338)
T 4b4t_U 77 NEMCKKINAK-EKLIGWYHSGPK 98 (338)
T ss_dssp HHHHHHHCCS-CEEEEEEECCSS
T ss_pred HHHHhhcCcc-CCEEEEEecCCC
Confidence 4444444454 899999988764
No 6
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=52.74 E-value=8.7 Score=27.16 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHHh
Q 016171 298 PISQAFSEIKGDIIMS 313 (394)
Q Consensus 298 ~v~~Ai~aIK~DIirS 313 (394)
+-.+..++||+|||||
T Consensus 32 ~tE~q~k~iKr~IIRs 47 (49)
T 3bbz_A 32 STEDALNDIKRDIIRS 47 (49)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh
Confidence 3457789999999997
No 7
>1yyp_B DNA polymerase, POL; processivity fold (SAME fold AS HSV UL42, PCNA, and homotrim sliding clamps), replication-transferase complex; HET: DNA; 2.50A {Human herpesvirus 5}
Probab=38.28 E-value=9.6 Score=23.41 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=8.1
Q ss_pred CCceEEeecC
Q 016171 361 FPRRVFVPWL 370 (394)
Q Consensus 361 lPRRV~vp~~ 370 (394)
||+||++|-+
T Consensus 1 lP~RiYl~~~ 10 (26)
T 1yyp_B 1 LPRRLHLEPA 10 (26)
T ss_pred CCceEecCHH
Confidence 7999998653
No 8
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=37.31 E-value=55 Score=26.57 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=14.3
Q ss_pred hccCcceEEEEEEEEecchh
Q 016171 100 RMLLGGIKVVGIYVWATDSA 119 (394)
Q Consensus 100 RMLPGGi~VlGifv~~~~~~ 119 (394)
.|.|-|..++|+|-..|...
T Consensus 57 ~~~~~~~~ivG~~HSHP~~~ 76 (124)
T 1oi0_A 57 DMLPIGMKVFGTVHSHPSPS 76 (124)
T ss_dssp ----CCCEEEEEEEEESSSC
T ss_pred eeccCCCEEEEEEEECcCCC
Confidence 48899999999999999743
No 9
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=31.18 E-value=62 Score=29.40 Aligned_cols=118 Identities=18% Similarity=0.083 Sum_probs=59.6
Q ss_pred cEEEecCchhHHHHHHHhhC--CCCceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCC
Q 016171 3 NTVVVEKPQLLSAEDRLSQS--GLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSD 80 (394)
Q Consensus 3 Rtv~~ee~~v~~y~~~l~~~--~~~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
|+|+.....+++++.--... +.-=++|||.|+... +.-.|..++ .|+....+.
T Consensus 42 r~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~--~~~~I~~v~-~ppq~gt~~---------------------- 96 (211)
T 3rzv_A 42 RHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMR--NEFTITHVL-IPKQSAGSD---------------------- 96 (211)
T ss_dssp CCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEET--TEEEEEEEE-ECCEEECSS----------------------
T ss_pred EEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCC--CCEEEEEEE-eCCccCCCC----------------------
Confidence 77888888666655543321 112367999999864 433334444 333332211
Q ss_pred cccccCCHHHHHHHHHHhhhccCcceEEEEEEEEecch-hhccchHHHHHHHHHHHhhCCCCcCCCCceEEEEEecCCCe
Q 016171 81 SISLVIDKDWIAEHARQVSRMLLGGIKVVGIYVWATDS-AFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGYSPRR 159 (394)
Q Consensus 81 ~~~~~iD~~WVaeHA~qVsRMLPGGi~VlGifv~~~~~-~~~~~~~~L~~~l~~v~k~~~l~~~~~~e~l~Lhi~~stkk 159 (394)
.....+++=+-++.. . -|+.+||.|=..|.. .+-.... .....+.... ..+.+.|-+++....
T Consensus 97 -~v~~~~~~e~~~~~~--~----~~l~~vGWyHSHP~~~~~pS~~D--l~tq~~~q~~-------~~~~I~IVvsP~~~~ 160 (211)
T 3rzv_A 97 -YCNTENEEELFLIQD--Q----QGLITLGWIHTHPTQTAFLSSVD--LHTHCSYQMM-------LPESVAIVCSPKFQE 160 (211)
T ss_dssp -CEEECCHHHHHHHHH--H----HTCEEEEEEEECTTSCSCCCHHH--HHHHHHHHHH-------CTTCEEEEEETTTTE
T ss_pred -ceeccChHHHHHHHh--h----CCCEEEEEEeCCCCCCCCCCHHH--HHHHHHHHhc-------CCCeEEEEEcCCCCe
Confidence 012233332333322 2 499999999887753 2223222 2222222221 245677777765443
Q ss_pred EE
Q 016171 160 YT 161 (394)
Q Consensus 160 ~~ 161 (394)
+.
T Consensus 161 lg 162 (211)
T 3rzv_A 161 TG 162 (211)
T ss_dssp EE
T ss_pred ee
Confidence 33
No 10
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=29.28 E-value=78 Score=27.68 Aligned_cols=84 Identities=13% Similarity=0.018 Sum_probs=48.8
Q ss_pred cEEEecCchhHHHHHHHhhC-CC-CceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCC
Q 016171 3 NTVVVEKPQLLSAEDRLSQS-GL-SAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSD 80 (394)
Q Consensus 3 Rtv~~ee~~v~~y~~~l~~~-~~-~~~~GLLIGq~s~~~~rd~Vv~l~~TP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
|+|+.....+++++.-.... .. .=++|||.|+... +.-.|-.+++.|.......
T Consensus 9 ~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~--~~~~V~~v~~~pq~~t~~~---------------------- 64 (178)
T 2znr_A 9 RCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTH--NEFTITHVIVPKQSAGPDY---------------------- 64 (178)
T ss_dssp CCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEET--TEEEEEEEEECCEEEETTE----------------------
T ss_pred EEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecC--CCeEEEEEEeCCcCCCCCe----------------------
Confidence 67888888666655544331 11 2477999999865 5455556666665322210
Q ss_pred cccccCCHHHHHHHHHHhhhccCcceEEEEEEEEecch
Q 016171 81 SISLVIDKDWIAEHARQVSRMLLGGIKVVGIYVWATDS 118 (394)
Q Consensus 81 ~~~~~iD~~WVaeHA~qVsRMLPGGi~VlGifv~~~~~ 118 (394)
....|.+ ..|.- |.--|+.+||.|=..|..
T Consensus 65 --~~~~~~~--e~~~~----~~~~~l~~vGwyHSHP~~ 94 (178)
T 2znr_A 65 --CDMENVE--ELFNV----QDQHDLLTLGWIHTHPTQ 94 (178)
T ss_dssp --EEECCHH--HHHHH----HHHHTCEEEEEEEECSSS
T ss_pred --eccCCHH--HHHHH----HHhCCCEEEEEEeCCCCC
Confidence 1112222 11222 333599999999999764
No 11
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=25.00 E-value=1.1e+02 Score=25.76 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=18.4
Q ss_pred ceEEEEeeecCCCCCccEEEEecCCCCC
Q 016171 26 AQVGLLIGKLSPTLDRGFIFDFIPTPQN 53 (394)
Q Consensus 26 ~~~GLLIGq~s~~~~rd~Vv~l~~TP~~ 53 (394)
=++|||+|+... .+...|..+.|.|..
T Consensus 22 E~cGlL~G~~~~-~~~~~v~~~~p~~n~ 48 (153)
T 2kcq_A 22 EGCGFLLGTVTD-DGDNRVAALHRATNR 48 (153)
T ss_dssp CCCEEEEEEECT-TSCEEEEEEEESSCC
T ss_pred ceEEEEEEeecc-CCCeEEEEEEECCCC
Confidence 589999999852 133466666677654
No 12
>1uf2_K Structural protein P7; virus components, icosahedral virus; 3.50A {Rice dwarf virus}
Probab=23.22 E-value=27 Score=35.08 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=27.7
Q ss_pred CCHHHHHHHHH------------HhhhccCcceEEEEEEEEecch
Q 016171 86 IDKDWIAEHAR------------QVSRMLLGGIKVVGIYVWATDS 118 (394)
Q Consensus 86 iD~~WVaeHA~------------qVsRMLPGGi~VlGifv~~~~~ 118 (394)
.+.+.|..|++ ++.+++|||+.++|+|-+.+.+
T Consensus 314 ~fn~~v~k~~~~G~YgnkVil~h~~~~l~~ngirilGi~~l~s~~ 358 (506)
T 1uf2_K 314 LYSETISKHVSDGSYGNRVIISHKMSRLSNGGVKIIGRFKISDFN 358 (506)
T ss_pred HHHHHHHHHhhccCcCCeEEEeeCccccCCCCceEEEEEeeccHH
Confidence 55678888875 5789999999999999987764
No 13
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=20.26 E-value=59 Score=28.16 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=38.4
Q ss_pred CCCCCcceeeecccccceeEEEEEEEeceeeeeeecCCCCcchHHHHHHHHHHHHHHhhccceEEEcCeeccCCCCCCCC
Q 016171 173 SSCLRPCDLKTGLVLKTLRTFKCTYNFSLRLPIRLVGASNTQTFSDILRQGISVHANELRGAKAVVDGNFVVNDEPCSTD 252 (394)
Q Consensus 173 ~ss~kpadwK~~~~~~~w~~l~c~~~~d~~lPl~~~~~~~~~~l~~~l~~~l~~~~~~l~~s~~lidG~~~~~d~~l~~~ 252 (394)
+..-.||=.||...+++|+. ...+..-.. -..+ +- .+-+++++++|=||+.....- ...
T Consensus 41 ~ta~e~c~~kf~~l~skWq~-k~y~p~cvn-s~~d------GK------------L~Vlq~GLYyIYgQV~fcs~y-~~~ 99 (166)
T 2r32_A 41 ETAKEPCMAKFGPLPSKWQM-ASSEPPCVN-KVSD------WK------------LEILQNGLYLIYGQVAPNANY-NDV 99 (166)
T ss_dssp -----CCEEEECSTTCCEEE-C---CCSEE-EEET------TE------------EEECSCEEEEEEEEECBCC------
T ss_pred cccccchhhhcCcCchhhhh-hCCCCcccc-cccc------cc------------EEEEeCCEEEEEEEeeccccc-ccC
Confidence 44557999999999999993 322222211 1111 11 145689999999999874443 356
Q ss_pred CceEEEEEee
Q 016171 253 GLHEVELLLP 262 (394)
Q Consensus 253 ~~~~v~ll~p 262 (394)
.||.|.|++.
T Consensus 100 APF~v~Lyln 109 (166)
T 2r32_A 100 APFEVRLYKN 109 (166)
T ss_dssp -CCCEEEEET
T ss_pred CCeEEEEEec
Confidence 7899999873
Done!