Query 016171
Match_columns 394
No_of_seqs 95 out of 104
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 09:06:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016171.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016171hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q1ma1 b.22.1.1 (A:57-172) Gl 65.8 2.1 0.00015 32.7 3.2 91 178-292 1-96 (116)
2 d2q8oa1 b.22.1.1 (A:49-173) Gl 54.5 3.9 0.00029 31.5 3.0 91 177-290 2-98 (125)
3 d1dt9a3 d.91.1.1 (A:5-142) N-t 41.4 7.7 0.00056 31.2 2.9 29 358-390 109-137 (138)
4 d1oi0a_ c.97.3.1 (A:) Hypothet 17.4 96 0.007 23.2 5.5 21 101-121 58-78 (121)
5 d2dmda1 g.37.1.1 (A:34-61) Zin 11.6 8.3 0.0006 22.2 -2.0 15 158-172 2-16 (28)
6 d1tkea1 d.15.10.1 (A:1-62) Thr 9.8 1E+02 0.0076 20.2 3.0 26 234-261 36-61 (62)
7 d1v7wa1 a.102.1.4 (A:271-801) 8.1 5.2E+02 0.038 22.5 8.5 63 181-261 463-530 (531)
8 d1z9da1 c.73.1.3 (A:4-241) Uri 7.9 1.2E+02 0.0085 24.1 3.2 25 85-109 23-47 (238)
9 d1pb6a2 a.121.1.1 (A:86-211) H 7.9 72 0.0052 23.6 1.7 23 84-106 101-123 (126)
10 d1wkta_ b.11.1.2 (A:) Yeast ki 7.6 44 0.0032 23.4 0.2 18 160-184 6-23 (88)
No 1
>d2q1ma1 b.22.1.1 (A:57-172) Glucocorticoid-induced TNF-related ligand, TNFSF18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.75 E-value=2.1 Score=32.73 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=54.4
Q ss_pred cceeeecccccceeEEEEEEEeceeeeeeecCCCCcchHHHHHHHHHHHHHHhhccceEEEcCeeccCCCCCCCCCceEE
Q 016171 178 PCDLKTGLVLKTLRTFKCTYNFSLRLPIRLVGASNTQTFSDILRQGISVHANELRGAKAVVDGNFVVNDEPCSTDGLHEV 257 (394)
Q Consensus 178 padwK~~~~~~~w~~l~c~~~~d~~lPl~~~~~~~~~~l~~~l~~~l~~~~~~l~~s~~lidG~~~~~d~~l~~~~~~~v 257 (394)
||=.||...+++|+.-.-. .|-.+.. ..+. .+-|+++++||=|++.++.. .....||.|
T Consensus 1 pC~~KF~~l~SKWqm~sp~------p~CVn~t--sD~~------------L~ILQnGlYLIYGQV~Pn~~-Yk~~APF~V 59 (116)
T d2q1ma1 1 PCMAKFGPLPSKWQMASSE------PPCVNKV--SDWK------------LEILQNGLYLIYGQVAPNAN-YNDVAPFEV 59 (116)
T ss_dssp CCEEEECSTTCCEEEECCS------SCSEEEE--ETTE------------EEECSCEEEEEEEEECBCTT-CCSSSCCCE
T ss_pred CcceeeccCCcccccCCCC------CCccccc--chHH------------hHhhhCceEEEEEEEcCCcc-cCCCCCeEE
Confidence 7888999999999853210 1111110 0122 24569999999999999544 345568899
Q ss_pred EEEeecCcCCCc----ccccccceeeEEEE-EeEEEEEEE
Q 016171 258 ELLLPLLNDTSA----EACSQKDVVGLLIL-SGSVCSFAF 292 (394)
Q Consensus 258 ~ll~p~~~~~~~----~~~~~~~~~g~i~~-~G~v~~rAy 292 (394)
+++-. +... ..+.++.++|.-.| -|.+.-..|
T Consensus 60 ~l~kn---~d~iQtLtN~~~i~~vGG~YElhaGD~i~L~F 96 (116)
T d2q1ma1 60 RLYKN---KDMIQTLTNKSKIQNVGGTYELHVGDTIDLIF 96 (116)
T ss_dssp EEEET---TEEEEEECCSSSCEECCEEEEECTTCEEEEEE
T ss_pred EEeec---CcHHHhhhccceEEEcCcEEEecCCCEEEEEE
Confidence 88752 1111 12456777787666 344444433
No 2
>d2q8oa1 b.22.1.1 (A:49-173) Glucocorticoid-induced TNF-related ligand, TNFSF18 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.47 E-value=3.9 Score=31.49 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=54.8
Q ss_pred CcceeeecccccceeEEEEEEEeceeeeeeecCCCCcchHHHHHHHHHHHHHHhhccceEEEcCeeccCCCCC-CCCCce
Q 016171 177 RPCDLKTGLVLKTLRTFKCTYNFSLRLPIRLVGASNTQTFSDILRQGISVHANELRGAKAVVDGNFVVNDEPC-STDGLH 255 (394)
Q Consensus 177 kpadwK~~~~~~~w~~l~c~~~~d~~lPl~~~~~~~~~~l~~~l~~~l~~~~~~l~~s~~lidG~~~~~d~~l-~~~~~~ 255 (394)
.||=.||...+++|+.-. -..|-.+.. ..+. .+-|+++++||=|++.+-|... ....||
T Consensus 2 epCm~KF~~l~SKWqm~s------p~p~CVn~t--sD~~------------L~ILQnG~YLIYGQV~Pv~~~~~k~~APF 61 (125)
T d2q8oa1 2 ESCMVKFELSSSKWHMTS------PKPHCVNTT--SDGK------------LKILQSGTYLIYGQVIPVDKKYIKDNAPF 61 (125)
T ss_dssp CCCEEEEETTTTEEEESS------SSCSSEEEC--TTSC------------EEECSCEEEEEEEEECBCCGGGCCSCCCE
T ss_pred CcceEEeccCCcccccCC------CCCCccccc--chHH------------hHhhhCceEEEEEEEecCccccccCCCCe
Confidence 488999999999998422 011111211 1122 2456999999999999855543 455689
Q ss_pred EEEEEeecCcCCCc----ccccccceeeEEEE-EeEEEEE
Q 016171 256 EVELLLPLLNDTSA----EACSQKDVVGLLIL-SGSVCSF 290 (394)
Q Consensus 256 ~v~ll~p~~~~~~~----~~~~~~~~~g~i~~-~G~v~~r 290 (394)
.|+++-. +... ..+.++.++|.-.+ .|.+.-.
T Consensus 62 ~V~l~k~---~d~iQtLtN~~~i~~vGG~YElhaGD~i~L 98 (125)
T d2q8oa1 62 VVQIYKK---NDVLQTLMNDFQILPIGGVYELHAGDNIYL 98 (125)
T ss_dssp EEEEEET---TEEEEEEEESSCCEEEEEEEEECTTCEEEE
T ss_pred EEEEeec---CcHHHhhhccceEEecCcEEEecCCCEEEE
Confidence 9998752 1111 12456777777665 3444433
No 3
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.42 E-value=7.7 Score=31.21 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=21.6
Q ss_pred CCCCCceEEeecCCceeEEeecCCCCCHHHHHh
Q 016171 358 GLSFPRRVFVPWLADTYICDYLQPSETLEVCIS 390 (394)
Q Consensus 358 ~~~lPRRV~vp~~~~v~~cDYlF~~E~~~d~~~ 390 (394)
.+++|+ |+...++.||=-|.=|-.+++++
T Consensus 109 ~iePp~----pi~~~~Y~CD~~F~~e~L~~mLe 137 (138)
T d1dt9a3 109 DFEPFK----PINTSLYLCDNKFHTEALTALLS 137 (138)
T ss_dssp EECCSC----CTTCCEEEEESSCCCHHHHHHCC
T ss_pred EecCCC----cccceEEEcCCeeehHHHHHHhc
Confidence 455654 45456899999999998888764
No 4
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=17.42 E-value=96 Score=23.24 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=14.7
Q ss_pred ccCcceEEEEEEEEecchhhc
Q 016171 101 MLLGGIKVVGIYVWATDSAFK 121 (394)
Q Consensus 101 MLPGGi~VlGifv~~~~~~~~ 121 (394)
|++=|+.|+|+|-..|.....
T Consensus 58 ~~~~~~~ivgi~HSHP~~~a~ 78 (121)
T d1oi0a_ 58 MLPIGMKVFGTVHSHPSPSCR 78 (121)
T ss_dssp ---CCCEEEEEEEEESSSCCS
T ss_pred hhhcCCeEEEEEEecCCCCCC
Confidence 445589999999999975433
No 5
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.64 E-value=8.3 Score=22.15 Aligned_cols=15 Identities=20% Similarity=0.762 Sum_probs=11.4
Q ss_pred CeEEEEeeeccCCCC
Q 016171 158 RRYTCRNCTITSNIT 172 (394)
Q Consensus 158 kk~~Ck~~d~~~~~~ 172 (394)
|++-||.||++..|+
T Consensus 2 kp~kck~cdyaaads 16 (28)
T d2dmda1 2 KPYKCKTCDYAAADS 16 (28)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCcccccccchhcch
Confidence 678899998876653
No 6
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=9.83 E-value=1e+02 Score=20.24 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=18.2
Q ss_pred ceEEEcCeeccCCCCCCCCCceEEEEEe
Q 016171 234 AKAVVDGNFVVNDEPCSTDGLHEVELLL 261 (394)
Q Consensus 234 s~~lidG~~~~~d~~l~~~~~~~v~ll~ 261 (394)
-.+.+||++++-+.++..++ .|++++
T Consensus 36 vaa~vng~l~dL~~~l~~d~--~veiiT 61 (62)
T d1tkea1 36 IAGRVNGELVDACDLIENDA--QLSIIT 61 (62)
T ss_dssp CEEEETTEEEETTCCBCSCE--EEEEEC
T ss_pred EEEEECCEEeCCCcCcCCCC--EEEEEe
Confidence 34579999999888876554 455543
No 7
>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}
Probab=8.08 E-value=5.2e+02 Score=22.45 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=36.1
Q ss_pred eeec-ccccceeEEEEEEEec---eeeeeeecCCCCcchHHHHHHHHHHHHHHhhccceEEEcCeeccCCCCCCC-CCce
Q 016171 181 LKTG-LVLKTLRTFKCTYNFS---LRLPIRLVGASNTQTFSDILRQGISVHANELRGAKAVVDGNFVVNDEPCST-DGLH 255 (394)
Q Consensus 181 wK~~-~~~~~w~~l~c~~~~d---~~lPl~~~~~~~~~~l~~~l~~~l~~~~~~l~~s~~lidG~~~~~d~~l~~-~~~~ 255 (394)
+.+. .++..|..+++.+.+. ..|-+.+.+... -.-..+++||+.++...+... .+.|
T Consensus 463 l~i~P~LP~~w~~~~~~~~~~g~~~~i~v~~~~~~~------------------~~~~~v~~nG~~v~~~i~~~~~g~~~ 524 (531)
T d1v7wa1 463 LSVDPCIPSDWPGFEVTRQWRGATYHIQVENPDHVS------------------KGVKSITLNGAPIQGRIPPQAQGSDN 524 (531)
T ss_dssp BEECCBCCTTCCEEEEEEEETTEEEEEEEECTTCCS------------------BCEEEEEETTEEECSSBCCCCTTCEE
T ss_pred EEEeccCCCCCCcEEEEEEECCEEEEEEEEECCCcc------------------ceeEEEEECCEEccceeeeccCCCEE
Confidence 4555 3567788888777654 233343321110 011458899999877655433 3567
Q ss_pred EEEEEe
Q 016171 256 EVELLL 261 (394)
Q Consensus 256 ~v~ll~ 261 (394)
.|.+.+
T Consensus 525 ~v~v~~ 530 (531)
T d1v7wa1 525 QVVVVL 530 (531)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777754
No 8
>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]}
Probab=7.91 E-value=1.2e+02 Score=24.09 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHhhhccCcceEEE
Q 016171 85 VIDKDWIAEHARQVSRMLLGGIKVV 109 (394)
Q Consensus 85 ~iD~~WVaeHA~qVsRMLPGGi~Vl 109 (394)
.||.+|+.+-|+|+.++.--|.-|+
T Consensus 23 ~l~~~~l~~ia~~I~~l~~~g~~Vv 47 (238)
T d1z9da1 23 GIDIPTVQAIAKEIAEVHVSGVQIA 47 (238)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 4999999999999999999998774
No 9
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=7.91 E-value=72 Score=23.61 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=20.3
Q ss_pred ccCCHHHHHHHHHHhhhccCcce
Q 016171 84 LVIDKDWIAEHARQVSRMLLGGI 106 (394)
Q Consensus 84 ~~iD~~WVaeHA~qVsRMLPGGi 106 (394)
...|++.+.+|+++|.+|+-.|+
T Consensus 101 ~~~~~~~~e~~~~~v~~lvL~gl 123 (126)
T d1pb6a2 101 TLRDEVFFNQTVENVQRIIIEGI 123 (126)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHHHHHHHhhc
Confidence 45778999999999999999886
No 10
>d1wkta_ b.11.1.2 (A:) Yeast killer toxin {Williopsis mrakii [TaxId: 4963]}
Probab=7.59 E-value=44 Score=23.44 Aligned_cols=18 Identities=33% Similarity=0.879 Sum_probs=11.9
Q ss_pred EEEEeeeccCCCCCCCCCcceeeec
Q 016171 160 YTCRNCTITSNITSSCLRPCDLKTG 184 (394)
Q Consensus 160 ~~Ck~~d~~~~~~~ss~kpadwK~~ 184 (394)
+-||+||.. .+ .||||-.
T Consensus 6 imckncdpn----~g---scdwkqn 23 (88)
T d1wkta_ 6 IMCKNCDPN----TG---SCDWKQN 23 (88)
T ss_dssp EEESSSCTT----TS---CCBCSCC
T ss_pred EEeccCCCC----CC---ccchhcc
Confidence 579999752 22 4799843
Done!