Query 016175
Match_columns 394
No_of_seqs 306 out of 2402
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:29:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0225 Pyruvate dehydrogenase 100.0 5E-105 1E-109 761.8 29.5 375 16-393 11-389 (394)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.1E-89 2.5E-94 676.5 35.3 326 53-379 18-348 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 8.4E-86 1.8E-90 658.3 37.6 348 47-394 15-362 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 4.2E-79 9.2E-84 607.4 36.1 321 53-375 11-341 (341)
5 PLN02374 pyruvate dehydrogenas 100.0 8E-78 1.7E-82 611.9 36.5 324 53-378 77-410 (433)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 2.2E-77 4.8E-82 590.0 32.8 312 61-374 1-315 (315)
7 TIGR03181 PDH_E1_alph_x pyruva 100.0 2.9E-72 6.4E-77 558.9 34.1 309 56-375 18-329 (341)
8 PF00676 E1_dh: Dehydrogenase 100.0 2.7E-72 5.8E-77 550.3 29.6 296 70-366 2-300 (300)
9 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 8.3E-71 1.8E-75 538.5 32.2 290 67-357 1-293 (293)
10 KOG1182 Branched chain alpha-k 100.0 3.2E-63 6.9E-68 470.6 22.2 325 52-377 76-404 (432)
11 PRK09404 sucA 2-oxoglutarate d 100.0 5.1E-59 1.1E-63 506.8 32.1 327 33-374 155-527 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 3.9E-52 8.5E-57 451.2 31.1 326 33-365 154-522 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 6.8E-48 1.5E-52 368.7 19.3 213 97-310 17-264 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 4.9E-35 1.1E-39 311.4 28.8 312 44-363 477-824 (1228)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.7E-34 3.6E-39 305.9 20.5 230 48-298 4-250 (581)
16 COG3959 Transketolase, N-termi 100.0 3.7E-33 8.1E-38 256.2 13.6 221 62-293 5-243 (243)
17 PRK12754 transketolase; Review 100.0 3.7E-30 8E-35 275.0 22.6 232 71-314 8-273 (663)
18 TIGR00232 tktlase_bact transke 100.0 8.1E-30 1.8E-34 273.3 20.9 232 71-314 4-269 (653)
19 KOG0450 2-oxoglutarate dehydro 100.0 3.7E-29 8E-34 257.3 22.0 324 44-375 232-590 (1017)
20 PF00456 Transketolase_N: Tran 100.0 1.4E-30 3E-35 258.0 10.3 233 71-315 5-271 (332)
21 cd02007 TPP_DXS Thiamine pyrop 100.0 3.6E-29 7.8E-34 231.3 13.1 187 98-295 4-194 (195)
22 PRK12753 transketolase; Review 100.0 6.9E-29 1.5E-33 266.2 17.2 217 71-299 8-254 (663)
23 PTZ00089 transketolase; Provis 100.0 2.4E-28 5.2E-33 262.3 18.3 232 71-315 10-276 (661)
24 cd02012 TPP_TK Thiamine pyroph 100.0 9.2E-28 2E-32 230.5 16.5 202 93-300 16-236 (255)
25 PLN02790 transketolase 100.0 9.4E-28 2E-32 257.5 17.3 201 92-299 13-246 (654)
26 PRK05899 transketolase; Review 100.0 1.6E-27 3.5E-32 255.0 18.5 236 66-314 7-275 (624)
27 COG0567 SucA 2-oxoglutarate de 100.0 1.2E-26 2.7E-31 247.7 24.4 319 33-361 141-500 (906)
28 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 2E-27 4.4E-32 253.4 15.9 229 49-299 3-282 (617)
29 PRK05444 1-deoxy-D-xylulose-5- 99.9 3.5E-27 7.5E-32 250.5 16.2 233 47-299 7-250 (580)
30 cd02017 TPP_E1_EcPDC_like Thia 99.9 7.4E-27 1.6E-31 233.0 16.9 239 71-315 8-347 (386)
31 KOG0451 Predicted 2-oxoglutara 99.9 9.2E-25 2E-29 220.8 19.7 302 57-365 152-498 (913)
32 PLN02234 1-deoxy-D-xylulose-5- 99.9 2.3E-24 5.1E-29 228.7 19.1 232 49-301 69-331 (641)
33 PLN02582 1-deoxy-D-xylulose-5- 99.9 1.7E-24 3.7E-29 231.5 16.5 232 47-299 34-328 (677)
34 PRK12571 1-deoxy-D-xylulose-5- 99.9 2.6E-24 5.6E-29 230.4 16.3 232 47-299 9-291 (641)
35 COG0021 TktA Transketolase [Ca 99.9 1.5E-23 3.3E-28 217.2 18.9 230 71-314 10-275 (663)
36 TIGR00759 aceE pyruvate dehydr 99.9 4.2E-23 9.1E-28 222.0 18.1 218 72-297 80-394 (885)
37 TIGR03186 AKGDH_not_PDH alpha- 99.9 1.4E-22 3.1E-27 220.0 18.0 221 71-299 79-396 (889)
38 KOG0523 Transketolase [Carbohy 99.9 2.9E-22 6.4E-27 205.6 17.4 222 67-299 10-249 (632)
39 cd02011 TPP_PK Thiamine pyroph 99.9 2.8E-21 6.1E-26 181.3 14.3 181 98-295 2-207 (227)
40 PRK13012 2-oxoacid dehydrogena 99.9 9.1E-21 2E-25 206.7 18.5 218 71-297 93-408 (896)
41 PRK09405 aceE pyruvate dehydro 99.8 5.9E-20 1.3E-24 199.8 18.4 229 61-299 77-403 (891)
42 PRK11864 2-ketoisovalerate fer 99.8 1.3E-17 2.7E-22 162.9 19.3 233 120-358 14-297 (300)
43 PF13292 DXP_synthase_N: 1-deo 99.7 4.8E-17 1E-21 154.6 12.0 216 49-290 3-270 (270)
44 COG1154 Dxs Deoxyxylulose-5-ph 99.7 3.1E-16 6.7E-21 162.4 17.5 227 47-299 5-287 (627)
45 PLN02225 1-deoxy-D-xylulose-5- 99.7 1.1E-15 2.3E-20 163.5 18.1 223 47-294 79-367 (701)
46 cd02013 TPP_Xsc_like Thiamine 99.7 3.3E-16 7.1E-21 144.8 11.1 120 167-294 50-182 (196)
47 PRK05261 putative phosphoketol 99.7 1.4E-15 3E-20 164.1 16.4 140 154-297 126-289 (785)
48 cd00568 TPP_enzymes Thiamine p 99.7 6E-16 1.3E-20 138.0 10.7 114 166-290 42-168 (168)
49 cd02004 TPP_BZL_OCoD_HPCL Thia 99.7 9.8E-16 2.1E-20 138.4 11.9 113 167-290 45-171 (172)
50 cd02002 TPP_BFDC Thiamine pyro 99.6 2E-15 4.3E-20 136.8 11.8 110 170-290 49-178 (178)
51 cd02008 TPP_IOR_alpha Thiamine 99.6 8.5E-15 1.9E-19 133.3 13.7 116 167-290 48-176 (178)
52 cd02006 TPP_Gcl Thiamine pyrop 99.6 3.9E-15 8.5E-20 138.1 11.1 118 167-292 54-195 (202)
53 cd02014 TPP_POX Thiamine pyrop 99.6 1.2E-14 2.6E-19 132.2 11.4 115 167-292 48-174 (178)
54 cd03372 TPP_ComE Thiamine pyro 99.6 3.5E-14 7.5E-19 129.6 13.8 115 168-295 40-159 (179)
55 cd02015 TPP_AHAS Thiamine pyro 99.6 1.2E-14 2.6E-19 133.0 10.5 114 168-292 48-175 (186)
56 cd03371 TPP_PpyrDC Thiamine py 99.5 4.7E-14 1E-18 129.8 12.7 116 169-295 47-167 (188)
57 PRK06163 hypothetical protein; 99.5 6.7E-14 1.5E-18 130.2 13.5 130 168-313 55-190 (202)
58 cd02010 TPP_ALS Thiamine pyrop 99.5 3.9E-14 8.4E-19 129.0 11.0 115 167-292 45-171 (177)
59 cd02003 TPP_IolD Thiamine pyro 99.5 9.1E-14 2E-18 129.4 13.5 116 167-293 45-186 (205)
60 PF02775 TPP_enzyme_C: Thiamin 99.5 1.6E-14 3.4E-19 128.0 7.3 113 167-288 25-153 (153)
61 cd02001 TPP_ComE_PpyrDC Thiami 99.5 6.3E-14 1.4E-18 125.3 10.6 111 169-291 41-155 (157)
62 PRK07524 hypothetical protein; 99.5 7.3E-14 1.6E-18 147.4 11.6 118 167-295 404-533 (535)
63 cd02005 TPP_PDC_IPDC Thiamine 99.5 2.2E-13 4.7E-18 124.7 11.4 116 167-292 47-175 (183)
64 TIGR03846 sulfopy_beta sulfopy 99.5 2.2E-13 4.8E-18 124.6 10.8 111 169-292 41-157 (181)
65 COG0028 IlvB Thiamine pyrophos 99.5 3.1E-13 6.7E-18 142.9 11.9 116 167-293 405-533 (550)
66 PRK08327 acetolactate synthase 99.5 3.4E-13 7.3E-18 143.5 11.7 118 167-290 427-566 (569)
67 PRK06154 hypothetical protein; 99.5 4E-13 8.7E-18 142.8 12.2 117 168-292 429-556 (565)
68 PRK12474 hypothetical protein; 99.4 4.7E-13 1E-17 140.8 12.5 113 167-290 386-518 (518)
69 PRK07092 benzoylformate decarb 99.4 6.3E-13 1.4E-17 140.2 13.1 113 167-290 404-529 (530)
70 PRK08266 hypothetical protein; 99.4 6E-13 1.3E-17 140.6 12.4 118 168-296 400-530 (542)
71 PRK06725 acetolactate synthase 99.4 4.4E-13 9.5E-18 142.7 11.4 115 167-292 419-546 (570)
72 cd02009 TPP_SHCHC_synthase Thi 99.4 3.8E-13 8.2E-18 122.2 9.2 111 168-290 49-174 (175)
73 PRK06546 pyruvate dehydrogenas 99.4 8.2E-13 1.8E-17 140.8 12.2 115 167-292 405-531 (578)
74 TIGR01504 glyox_carbo_lig glyo 99.4 5E-13 1.1E-17 142.7 10.3 117 167-291 415-555 (588)
75 PRK07525 sulfoacetaldehyde ace 99.4 6.4E-13 1.4E-17 141.8 10.3 120 168-295 433-566 (588)
76 PRK07586 hypothetical protein; 99.4 1.4E-12 3E-17 136.9 12.6 112 168-290 383-514 (514)
77 PRK07979 acetolactate synthase 99.4 8.3E-13 1.8E-17 140.6 10.8 118 167-292 418-549 (574)
78 cd03376 TPP_PFOR_porB_like Thi 99.4 1.9E-12 4.1E-17 123.2 11.8 116 166-290 58-199 (235)
79 cd03375 TPP_OGFOR Thiamine pyr 99.4 2.5E-12 5.5E-17 118.7 12.0 114 168-290 49-183 (193)
80 PRK09107 acetolactate synthase 99.4 1E-12 2.2E-17 140.6 10.4 115 167-292 427-555 (595)
81 PRK09124 pyruvate dehydrogenas 99.4 1.9E-12 4.1E-17 137.8 12.3 115 167-292 405-531 (574)
82 PRK05858 hypothetical protein; 99.4 1.4E-12 3E-17 138.0 11.1 114 168-292 405-531 (542)
83 PRK07064 hypothetical protein; 99.4 2.2E-12 4.8E-17 136.3 12.1 116 165-291 400-528 (544)
84 PRK06112 acetolactate synthase 99.4 2.3E-12 5E-17 137.2 12.2 114 168-292 435-561 (578)
85 TIGR02418 acolac_catab acetola 99.4 2.5E-12 5.4E-17 135.9 12.1 115 167-292 405-531 (539)
86 PRK11269 glyoxylate carboligas 99.4 1.6E-12 3.4E-17 138.9 10.4 118 167-292 416-557 (591)
87 CHL00099 ilvB acetohydroxyacid 99.4 2.1E-12 4.6E-17 137.8 11.1 114 167-291 427-555 (585)
88 PRK07418 acetolactate synthase 99.4 2E-12 4.4E-17 138.8 10.9 115 167-292 431-560 (616)
89 PRK06965 acetolactate synthase 99.4 2.1E-12 4.5E-17 138.0 10.9 116 167-292 434-563 (587)
90 TIGR00118 acolac_lg acetolacta 99.4 2.2E-12 4.7E-17 136.9 11.0 115 167-292 409-537 (558)
91 TIGR02720 pyruv_oxi_spxB pyruv 99.4 3.1E-12 6.8E-17 136.2 11.8 116 168-292 406-533 (575)
92 TIGR03457 sulphoacet_xsc sulfo 99.4 3E-12 6.6E-17 136.4 11.4 117 168-292 428-558 (579)
93 PLN02573 pyruvate decarboxylas 99.4 2.7E-12 5.9E-17 136.9 10.8 115 167-290 425-551 (578)
94 PRK08979 acetolactate synthase 99.4 2.5E-12 5.5E-17 136.9 10.4 116 167-292 418-547 (572)
95 TIGR03393 indolpyr_decarb indo 99.4 2.3E-12 5E-17 136.2 10.0 113 167-290 401-526 (539)
96 PRK06466 acetolactate synthase 99.4 3.7E-12 8.1E-17 135.6 11.7 116 167-292 420-549 (574)
97 PRK08527 acetolactate synthase 99.3 3.9E-12 8.6E-17 135.1 11.7 115 167-292 411-539 (563)
98 PRK08273 thiamine pyrophosphat 99.3 4.1E-12 9E-17 135.9 11.8 116 167-292 412-547 (597)
99 PRK08199 thiamine pyrophosphat 99.3 4.8E-12 1E-16 134.3 12.1 115 167-292 412-539 (557)
100 PRK06457 pyruvate dehydrogenas 99.3 4.5E-12 9.8E-17 134.3 11.8 115 167-292 393-520 (549)
101 PRK06882 acetolactate synthase 99.3 6.5E-12 1.4E-16 133.7 12.2 116 167-292 418-547 (574)
102 PRK06456 acetolactate synthase 99.3 4.3E-12 9.3E-17 135.0 10.8 115 167-292 418-546 (572)
103 TIGR03297 Ppyr-DeCO2ase phosph 99.3 1.1E-11 2.4E-16 124.8 13.1 131 168-312 219-354 (361)
104 cd02018 TPP_PFOR Thiamine pyro 99.3 4.7E-12 1E-16 120.6 9.7 116 168-290 62-202 (237)
105 PRK08617 acetolactate synthase 99.3 6.2E-12 1.3E-16 133.2 11.5 115 167-292 411-537 (552)
106 PLN02470 acetolactate synthase 99.3 6.4E-12 1.4E-16 134.1 11.6 115 167-292 423-558 (585)
107 PRK07710 acetolactate synthase 99.3 8E-12 1.7E-16 133.0 12.2 115 167-292 421-549 (571)
108 PRK08155 acetolactate synthase 99.3 8.6E-12 1.9E-16 132.5 12.4 115 167-292 416-544 (564)
109 PRK06048 acetolactate synthase 99.3 7.8E-12 1.7E-16 132.8 12.0 114 168-292 412-539 (561)
110 PRK08611 pyruvate oxidase; Pro 99.3 6.4E-12 1.4E-16 133.9 11.4 114 168-292 406-531 (576)
111 PRK08322 acetolactate synthase 99.3 7.8E-12 1.7E-16 132.2 11.9 115 167-292 403-529 (547)
112 PRK08978 acetolactate synthase 99.3 1.2E-11 2.6E-16 131.0 11.5 115 167-292 398-526 (548)
113 PRK09628 oorB 2-oxoglutarate-a 99.3 1.6E-11 3.4E-16 119.4 11.1 112 169-290 67-200 (277)
114 PRK05778 2-oxoglutarate ferred 99.3 4.2E-11 9.1E-16 117.7 13.9 113 168-289 68-201 (301)
115 TIGR03254 oxalate_oxc oxalyl-C 99.3 2.6E-11 5.6E-16 128.6 12.9 113 167-291 414-538 (554)
116 PRK06276 acetolactate synthase 99.3 2.2E-11 4.7E-16 130.1 11.5 114 168-292 417-544 (586)
117 PRK09259 putative oxalyl-CoA d 99.3 2.7E-11 5.8E-16 128.9 11.9 113 167-291 421-546 (569)
118 TIGR03394 indol_phenyl_DC indo 99.3 2.3E-11 5E-16 128.6 10.8 113 167-290 400-520 (535)
119 PRK07282 acetolactate synthase 99.2 1.8E-11 4E-16 130.2 9.7 114 167-292 415-542 (566)
120 PRK07789 acetolactate synthase 99.2 1.9E-11 4E-16 131.3 9.8 116 167-292 444-577 (612)
121 PRK11869 2-oxoacid ferredoxin 99.2 8.5E-11 1.8E-15 114.4 11.9 116 167-290 57-192 (280)
122 PRK11866 2-oxoacid ferredoxin 99.2 1.1E-10 2.3E-15 113.6 12.5 115 167-290 56-191 (279)
123 TIGR02177 PorB_KorB 2-oxoacid: 99.2 9.3E-11 2E-15 114.4 11.2 113 168-290 51-185 (287)
124 PRK11867 2-oxoglutarate ferred 99.2 1E-10 2.2E-15 114.3 11.4 114 168-290 67-201 (286)
125 TIGR03336 IOR_alpha indolepyru 99.2 1.3E-10 2.9E-15 124.3 13.3 119 164-290 397-529 (595)
126 PRK07449 2-succinyl-5-enolpyru 99.2 3.1E-11 6.6E-16 128.4 8.3 111 168-290 423-548 (568)
127 PRK11865 pyruvate ferredoxin o 99.2 1.8E-09 3.9E-14 105.9 19.0 181 164-352 63-294 (299)
128 PLN02980 2-oxoglutarate decarb 98.9 3.1E-09 6.6E-14 125.2 9.7 115 166-292 755-890 (1655)
129 COG3961 Pyruvate decarboxylase 98.8 5.3E-09 1.2E-13 107.4 7.4 115 168-292 409-536 (557)
130 KOG1185 Thiamine pyrophosphate 98.8 5.7E-08 1.2E-12 99.0 13.4 122 160-291 419-560 (571)
131 COG2609 AceE Pyruvate dehydrog 98.8 1.1E-07 2.3E-12 100.4 15.0 129 167-297 189-397 (887)
132 COG3960 Glyoxylate carboligase 98.6 7.7E-08 1.7E-12 94.2 7.3 158 134-299 375-564 (592)
133 KOG4166 Thiamine pyrophosphate 98.5 1.2E-07 2.5E-12 95.4 6.6 225 36-294 402-650 (675)
134 KOG1184 Thiamine pyrophosphate 98.5 7.2E-07 1.6E-11 91.7 9.8 113 168-290 413-538 (561)
135 COG3962 Acetolactate synthase 98.3 4.6E-06 1E-10 84.9 11.4 114 167-291 441-575 (617)
136 PF09364 XFP_N: XFP N-terminal 98.1 1E-05 2.2E-10 80.6 8.7 133 156-298 126-288 (379)
137 COG1013 PorB Pyruvate:ferredox 97.9 0.0002 4.4E-09 70.5 13.3 115 167-290 67-203 (294)
138 COG3957 Phosphoketolase [Carbo 96.9 0.0036 7.9E-08 67.1 8.5 112 156-272 139-258 (793)
139 COG4231 Indolepyruvate ferredo 96.8 0.0074 1.6E-07 64.3 10.1 116 164-289 422-552 (640)
140 cd03377 TPP_PFOR_PNO Thiamine 96.7 0.036 7.8E-07 56.1 13.9 93 193-290 152-266 (365)
141 COG1165 MenD 2-succinyl-6-hydr 96.2 0.014 3E-07 61.5 7.4 106 175-292 427-547 (566)
142 cd06586 TPP_enzyme_PYR Pyrimid 95.4 0.18 4E-06 43.7 10.5 103 176-288 48-152 (154)
143 cd07034 TPP_PYR_PFOR_IOR-alpha 94.4 0.61 1.3E-05 41.1 11.3 90 194-289 67-159 (160)
144 cd07035 TPP_PYR_POX_like Pyrim 94.0 0.55 1.2E-05 41.1 10.0 103 175-288 46-153 (155)
145 PRK08659 2-oxoglutarate ferred 93.7 0.6 1.3E-05 47.7 10.9 116 174-299 59-178 (376)
146 cd07033 TPP_PYR_DXS_TK_like Py 93.6 0.76 1.6E-05 40.8 10.3 101 176-288 52-154 (156)
147 PRK07119 2-ketoisovalerate fer 93.3 0.8 1.7E-05 46.4 10.9 113 174-299 59-178 (352)
148 TIGR03845 sulfopyru_alph sulfo 92.5 2.3 4.9E-05 38.0 11.6 104 173-289 44-153 (157)
149 cd07039 TPP_PYR_POX Pyrimidine 92.4 1.6 3.5E-05 39.1 10.6 101 178-289 53-157 (164)
150 PF02776 TPP_enzyme_N: Thiamin 91.7 0.85 1.8E-05 40.9 8.0 106 175-289 51-160 (172)
151 TIGR02176 pyruv_ox_red pyruvat 91.5 0.75 1.6E-05 53.6 9.1 94 193-291 952-1067(1165)
152 PRK09627 oorA 2-oxoglutarate-a 90.9 1.7 3.6E-05 44.5 10.0 116 174-299 58-177 (375)
153 TIGR03710 OAFO_sf 2-oxoacid:ac 90.8 1.4 3.1E-05 47.3 9.9 115 174-298 248-366 (562)
154 PRK09193 indolepyruvate ferred 90.2 1.2 2.7E-05 51.5 9.2 65 168-238 479-545 (1165)
155 PRK13030 2-oxoacid ferredoxin 90.0 1.4 3.1E-05 51.1 9.4 66 168-239 466-533 (1159)
156 PF01855 POR_N: Pyruvate flavo 89.3 1.7 3.7E-05 41.3 8.1 109 175-298 48-161 (230)
157 cd07036 TPP_PYR_E1-PDHc-beta_l 88.9 2.1 4.6E-05 38.6 8.1 97 175-287 56-164 (167)
158 PRK08366 vorA 2-ketoisovalerat 88.8 4.3 9.2E-05 41.8 11.1 113 174-299 60-174 (390)
159 cd07038 TPP_PYR_PDC_IPDC_like 88.3 5.3 0.00011 35.6 10.2 104 176-288 48-160 (162)
160 PTZ00089 transketolase; Provis 86.8 3.9 8.4E-05 44.9 10.0 109 169-289 408-520 (661)
161 PF02779 Transket_pyr: Transke 86.6 6.2 0.00013 35.6 9.8 114 169-289 53-171 (178)
162 TIGR00232 tktlase_bact transke 86.5 2.9 6.3E-05 45.9 8.8 109 169-289 401-513 (653)
163 cd07037 TPP_PYR_MenD Pyrimidin 85.7 7.4 0.00016 34.9 9.6 103 178-289 50-161 (162)
164 TIGR00204 dxs 1-deoxy-D-xylulo 85.4 6 0.00013 43.1 10.4 110 168-289 356-468 (617)
165 PRK13029 2-oxoacid ferredoxin 85.3 3.9 8.5E-05 47.5 9.3 65 168-238 493-559 (1186)
166 PRK12571 1-deoxy-D-xylulose-5- 85.3 5.2 0.00011 43.8 9.9 109 168-289 365-477 (641)
167 PRK08367 porA pyruvate ferredo 83.3 11 0.00024 38.8 10.8 112 174-298 61-176 (394)
168 PRK09622 porA pyruvate flavodo 82.5 10 0.00022 39.2 10.2 111 174-297 67-181 (407)
169 PRK08611 pyruvate oxidase; Pro 82.4 11 0.00024 40.5 10.9 103 177-289 57-162 (576)
170 TIGR03297 Ppyr-DeCO2ase phosph 82.2 5.8 0.00013 40.3 8.2 109 172-289 35-151 (361)
171 PRK11892 pyruvate dehydrogenas 82.0 8.6 0.00019 40.5 9.6 106 168-289 193-311 (464)
172 PRK07525 sulfoacetaldehyde ace 82.0 14 0.00029 39.9 11.4 101 178-289 58-162 (588)
173 TIGR03254 oxalate_oxc oxalyl-C 81.8 11 0.00023 40.3 10.5 104 178-289 55-162 (554)
174 PRK07524 hypothetical protein; 81.8 13 0.00028 39.5 11.1 105 177-289 53-162 (535)
175 PRK08266 hypothetical protein; 81.5 12 0.00025 39.8 10.7 104 178-290 58-167 (542)
176 PRK12753 transketolase; Review 81.2 9.2 0.0002 42.1 9.9 109 169-289 407-519 (663)
177 PRK12754 transketolase; Review 81.1 9.6 0.00021 42.0 9.9 109 169-289 407-519 (663)
178 PRK06457 pyruvate dehydrogenas 81.1 15 0.00032 39.2 11.3 102 178-290 54-159 (549)
179 PRK08978 acetolactate synthase 80.3 13 0.00028 39.6 10.5 102 177-289 52-158 (548)
180 PLN02790 transketolase 80.1 12 0.00026 41.2 10.3 109 169-289 397-510 (654)
181 COG0028 IlvB Thiamine pyrophos 80.0 13 0.00029 39.9 10.4 101 178-289 54-159 (550)
182 PRK07064 hypothetical protein; 79.7 16 0.00035 38.8 10.9 105 178-290 56-165 (544)
183 PRK07979 acetolactate synthase 79.5 13 0.00029 39.8 10.3 102 178-290 57-163 (574)
184 PLN02234 1-deoxy-D-xylulose-5- 79.4 11 0.00024 41.3 9.6 113 168-295 403-519 (641)
185 PRK11269 glyoxylate carboligas 79.0 18 0.0004 38.9 11.2 103 178-290 57-164 (591)
186 PRK05444 1-deoxy-D-xylulose-5- 78.3 15 0.00032 39.7 10.2 109 168-289 325-437 (580)
187 TIGR03457 sulphoacet_xsc sulfo 78.2 21 0.00045 38.4 11.4 101 178-289 54-158 (579)
188 PRK05899 transketolase; Review 78.2 12 0.00025 40.8 9.5 106 169-288 372-483 (624)
189 PRK07710 acetolactate synthase 77.7 17 0.00038 38.9 10.6 103 177-290 67-174 (571)
190 PLN02683 pyruvate dehydrogenas 77.6 15 0.00032 37.3 9.4 98 175-288 86-195 (356)
191 PRK09259 putative oxalyl-CoA d 77.4 23 0.0005 38.0 11.3 103 178-289 62-169 (569)
192 PRK08322 acetolactate synthase 76.8 21 0.00045 38.0 10.7 102 178-290 53-159 (547)
193 PRK08199 thiamine pyrophosphat 76.4 21 0.00046 38.1 10.7 101 178-289 61-166 (557)
194 PRK06466 acetolactate synthase 76.3 23 0.00049 38.1 11.0 103 178-290 57-163 (574)
195 PRK06456 acetolactate synthase 76.2 22 0.00048 38.0 10.9 102 177-289 57-163 (572)
196 PRK06725 acetolactate synthase 76.1 23 0.00049 38.1 10.9 101 178-289 67-172 (570)
197 PRK12315 1-deoxy-D-xylulose-5- 75.8 13 0.00028 40.3 8.9 106 168-288 324-434 (581)
198 PLN02582 1-deoxy-D-xylulose-5- 75.8 17 0.00037 40.1 9.9 112 168-294 402-517 (677)
199 TIGR02418 acolac_catab acetola 75.7 25 0.00053 37.4 11.0 94 189-290 59-157 (539)
200 PRK07789 acetolactate synthase 75.3 26 0.00056 38.0 11.1 102 178-290 84-190 (612)
201 TIGR02720 pyruv_oxi_spxB pyruv 75.3 29 0.00063 37.3 11.5 95 189-291 61-159 (575)
202 PRK07418 acetolactate synthase 75.0 24 0.00052 38.3 10.8 101 178-289 75-180 (616)
203 COG0674 PorA Pyruvate:ferredox 75.0 24 0.00052 35.9 10.1 110 174-294 58-169 (365)
204 TIGR00118 acolac_lg acetolacta 74.8 26 0.00056 37.4 10.9 101 178-289 54-159 (558)
205 PRK06276 acetolactate synthase 74.4 25 0.00055 37.8 10.8 103 177-290 52-159 (586)
206 PLN02225 1-deoxy-D-xylulose-5- 73.8 18 0.0004 40.0 9.5 108 168-289 427-539 (701)
207 COG3958 Transketolase, C-termi 73.8 19 0.0004 35.7 8.5 109 168-288 53-165 (312)
208 PRK06112 acetolactate synthase 73.2 32 0.00069 36.9 11.2 102 178-290 64-170 (578)
209 PRK08155 acetolactate synthase 73.2 30 0.00066 37.0 10.9 101 178-289 66-171 (564)
210 PRK07586 hypothetical protein; 73.0 30 0.00066 36.4 10.8 102 178-290 54-160 (514)
211 PLN02470 acetolactate synthase 72.7 32 0.00069 37.1 11.0 103 177-290 65-172 (585)
212 PRK06048 acetolactate synthase 72.4 34 0.00074 36.6 11.1 102 177-289 59-165 (561)
213 PRK07092 benzoylformate decarb 71.8 31 0.00068 36.5 10.6 104 178-290 63-170 (530)
214 PRK06154 hypothetical protein; 71.3 20 0.00044 38.4 9.1 89 193-291 83-176 (565)
215 TIGR01504 glyox_carbo_lig glyo 71.3 33 0.00071 37.1 10.7 92 192-290 68-163 (588)
216 PRK08617 acetolactate synthase 70.4 29 0.00064 36.9 10.0 93 190-290 66-163 (552)
217 PRK12474 hypothetical protein; 69.7 42 0.00091 35.5 11.0 102 178-290 58-164 (518)
218 COG0021 TktA Transketolase [Ca 69.2 16 0.00035 39.8 7.5 109 169-289 407-519 (663)
219 PRK08327 acetolactate synthase 69.1 21 0.00045 38.3 8.6 104 178-289 65-179 (569)
220 TIGR03336 IOR_alpha indolepyru 68.9 35 0.00077 36.9 10.3 110 175-299 58-170 (595)
221 KOG4166 Thiamine pyrophosphate 68.7 31 0.00067 36.0 9.1 99 179-289 145-249 (675)
222 PRK09212 pyruvate dehydrogenas 68.4 27 0.00059 34.9 8.7 64 220-290 110-174 (327)
223 CHL00099 ilvB acetohydroxyacid 68.1 42 0.00091 36.1 10.7 93 190-290 75-172 (585)
224 PRK09107 acetolactate synthase 68.0 37 0.0008 36.7 10.2 102 178-289 64-169 (595)
225 TIGR03394 indol_phenyl_DC indo 67.7 41 0.00088 35.9 10.4 105 178-290 53-164 (535)
226 PRK05858 hypothetical protein; 67.3 46 0.00099 35.5 10.7 99 178-289 57-162 (542)
227 PRK08527 acetolactate synthase 67.0 41 0.00089 36.0 10.3 93 190-290 65-162 (563)
228 PRK06965 acetolactate synthase 67.0 52 0.0011 35.5 11.1 102 178-290 74-180 (587)
229 PRK06882 acetolactate synthase 66.2 47 0.001 35.6 10.6 102 178-290 57-163 (574)
230 PRK08273 thiamine pyrophosphat 65.7 32 0.00069 37.2 9.2 103 178-291 57-164 (597)
231 PTZ00182 3-methyl-2-oxobutanat 65.4 45 0.00097 33.8 9.7 98 175-287 94-202 (355)
232 PRK07282 acetolactate synthase 64.7 54 0.0012 35.2 10.7 103 177-290 62-169 (566)
233 PF09851 SHOCT: Short C-termin 64.1 14 0.0003 23.8 3.7 27 319-346 3-29 (31)
234 PRK06546 pyruvate dehydrogenas 62.0 63 0.0014 34.8 10.6 102 178-290 56-161 (578)
235 PRK09124 pyruvate dehydrogenas 61.8 72 0.0016 34.2 11.0 101 178-289 56-160 (574)
236 PRK08979 acetolactate synthase 60.7 70 0.0015 34.3 10.6 103 177-290 56-163 (572)
237 PLN02573 pyruvate decarboxylas 60.2 69 0.0015 34.5 10.5 103 178-289 69-180 (578)
238 CHL00144 odpB pyruvate dehydro 54.9 67 0.0014 32.2 8.7 31 254-287 140-171 (327)
239 COG1154 Dxs Deoxyxylulose-5-ph 53.4 80 0.0017 34.3 9.3 106 174-295 369-478 (627)
240 TIGR00173 menD 2-succinyl-5-en 51.4 51 0.0011 34.1 7.5 104 178-290 53-165 (432)
241 TIGR03393 indolpyr_decarb indo 49.5 86 0.0019 33.3 9.0 45 177-228 53-97 (539)
242 PRK11032 hypothetical protein; 49.2 49 0.0011 29.8 6.0 42 321-362 30-71 (160)
243 PF01380 SIS: SIS domain SIS d 48.7 33 0.00072 28.3 4.7 39 191-231 53-91 (131)
244 smart00861 Transket_pyr Transk 46.2 1.6E+02 0.0034 25.9 8.9 100 176-288 62-164 (168)
245 PF05014 Nuc_deoxyrib_tr: Nucl 43.7 42 0.0009 27.7 4.5 39 193-232 63-101 (113)
246 PLN02980 2-oxoglutarate decarb 41.0 89 0.0019 38.3 8.3 103 177-289 353-465 (1655)
247 cd05014 SIS_Kpsf KpsF-like pro 40.2 1E+02 0.0022 25.5 6.4 40 190-231 46-85 (128)
248 cd01460 vWA_midasin VWA_Midasi 39.4 3.7E+02 0.0081 26.2 11.3 82 194-276 166-257 (266)
249 PRK13683 hypothetical protein; 37.0 49 0.0011 26.7 3.6 35 257-294 18-52 (87)
250 KOG1402 Ornithine aminotransfe 30.9 96 0.0021 31.5 5.3 61 212-272 132-204 (427)
251 PF07295 DUF1451: Protein of u 30.4 80 0.0017 28.0 4.3 41 319-359 18-58 (146)
252 PF08640 U3_assoc_6: U3 small 30.0 82 0.0018 25.1 3.9 41 327-372 10-50 (83)
253 cd05710 SIS_1 A subgroup of th 28.3 1.2E+02 0.0027 25.1 5.0 40 190-231 46-85 (120)
254 TIGR02176 pyruv_ox_red pyruvat 27.8 4.5E+02 0.0098 31.2 10.9 110 176-297 64-175 (1165)
255 cd05009 SIS_GlmS_GlmD_2 SIS (S 27.3 1.3E+02 0.0028 25.4 5.1 39 191-230 61-99 (153)
256 cd01452 VWA_26S_proteasome_sub 26.9 1.6E+02 0.0036 27.0 5.9 33 194-226 109-142 (187)
257 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.2 1.4E+02 0.0031 24.4 5.0 39 190-230 45-83 (126)
258 cd05017 SIS_PGI_PMI_1 The memb 26.2 1.3E+02 0.0028 24.9 4.7 39 190-230 42-80 (119)
259 KOG0369 Pyruvate carboxylase [ 25.8 1.3E+02 0.0029 33.3 5.6 32 193-226 159-190 (1176)
260 PRK07449 2-succinyl-5-enolpyru 25.4 2E+02 0.0044 30.6 7.2 46 178-229 62-107 (568)
261 PRK05772 translation initiatio 25.3 3E+02 0.0065 28.2 7.9 113 167-295 174-294 (363)
262 PF10415 FumaraseC_C: Fumarase 24.9 80 0.0017 23.1 2.8 20 323-342 27-46 (55)
263 PRK13761 hypothetical protein; 24.8 1.2E+02 0.0026 29.0 4.6 43 254-314 69-112 (248)
264 COG4032 Predicted thiamine-pyr 24.7 2.5E+02 0.0054 25.1 6.2 106 174-289 53-162 (172)
265 TIGR00441 gmhA phosphoheptose 24.4 1.3E+02 0.0028 26.3 4.6 40 190-231 78-117 (154)
266 PRK13936 phosphoheptose isomer 23.3 1.5E+02 0.0032 27.2 4.9 41 189-231 109-149 (197)
267 PRK13938 phosphoheptose isomer 23.2 2.1E+02 0.0045 26.4 5.9 42 188-231 110-151 (196)
268 PF10925 DUF2680: Protein of u 22.4 2.1E+02 0.0046 21.3 4.6 29 325-353 24-52 (59)
269 PF00140 Sigma70_r1_2: Sigma-7 22.3 1.4E+02 0.003 19.9 3.3 35 319-353 2-36 (37)
270 PF07615 Ykof: YKOF-related Fa 21.9 3E+02 0.0065 21.7 5.7 36 257-293 41-77 (81)
271 PRK00414 gmhA phosphoheptose i 21.7 1.7E+02 0.0037 26.7 5.0 40 190-231 110-149 (192)
272 cd05007 SIS_Etherase N-acetylm 21.6 1.8E+02 0.004 27.9 5.4 40 190-231 117-156 (257)
273 TIGR03186 AKGDH_not_PDH alpha- 21.5 6.3E+02 0.014 29.1 10.1 116 168-289 564-689 (889)
274 PF08312 cwf21: cwf21 domain; 21.0 2.6E+02 0.0056 19.8 4.6 31 321-352 13-43 (46)
275 cd08323 CARD_APAF1 Caspase act 20.6 1.1E+02 0.0024 24.6 3.0 26 321-346 16-41 (86)
276 cd00198 vWFA Von Willebrand fa 20.6 2.9E+02 0.0064 22.4 5.9 36 191-226 100-137 (161)
277 PF02979 NHase_alpha: Nitrile 20.5 1.8E+02 0.004 26.8 4.7 29 321-349 9-37 (188)
278 KOG1145 Mitochondrial translat 20.2 1.2E+03 0.025 25.7 12.4 105 191-297 225-344 (683)
No 1
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.8e-105 Score=761.78 Aligned_cols=375 Identities=64% Similarity=1.049 Sum_probs=354.8
Q ss_pred cccccccccccCCCCCC--CCCceeeeCCCCccceecCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 016175 16 ILKPLTNSFLLHRPIST--DTTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92 (394)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~g 92 (394)
++.++..+..+++...+ ...+++++.+ ||+.|++++ |++...+|+++++++|++|+++|+||..++++|++|+|+|
T Consensus 11 ~l~~~~~~~~s~~~~~~r~~~~~~~~~~~-~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRG 89 (394)
T KOG0225|consen 11 LLRPLAQAPPSRTLVNTRLVPSDVTFESS-PFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRG 89 (394)
T ss_pred hhchhhhcCccchhhccccCccccccccc-ceeEEEccCCCCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhce
Confidence 55555554322222222 3455666665 999999999 9999999999999999999999999999999999999999
Q ss_pred ccccCCchHHHHHHHHhccCCCCeeecCCcchhhHhhcCCCHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCc
Q 016175 93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172 (394)
Q Consensus 93 f~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~lsrG~~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~l 172 (394)
|||+|.||||++||+.++|++.|.++++||||++.+.||.++.++|+||+|+.+||++|+|||||++.+ +|+|++|+|
T Consensus 90 FCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIV 167 (394)
T KOG0225|consen 90 FCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIV 167 (394)
T ss_pred eeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--cccCcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 599999999
Q ss_pred cchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhcC
Q 016175 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252 (394)
Q Consensus 173 G~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g~ 252 (394)
|+|+|+++|+|+|+||++.+.++++|+|||++||||+|||+|||++|+||+||||+||+|||+|+.++.+..++|+++|.
T Consensus 168 GAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~ 247 (394)
T KOG0225|consen 168 GAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGD 247 (394)
T ss_pred ccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHc
Q 016175 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH 331 (394)
Q Consensus 253 ~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~ 331 (394)
|+||++|||+|+.+|++|.++|++++++ +||+++|+.|||++|||++||+++||++||+++.|++||||..++++|++.
T Consensus 248 yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~ 327 (394)
T KOG0225|consen 248 YIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIEL 327 (394)
T ss_pred CCCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccccccCCCCcccccCccccccccC
Q 016175 332 DLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVKGYGVEVFGADRKEVRSAL 393 (394)
Q Consensus 332 g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~ 393 (394)
+++|++|||+|+++++++||+++++|+++|+|++++||+|||+++++.+++|+++++.++.+
T Consensus 328 ~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy~~~~~~~~~g~~~~~~~~~~ 389 (394)
T KOG0225|consen 328 GLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVYVKGTGFEIRGGRIDEEKWQF 389 (394)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhccCCCccccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999988877654
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-89 Score=676.49 Aligned_cols=326 Identities=44% Similarity=0.754 Sum_probs=311.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCC-CeeecCCcchhhHhhcC
Q 016175 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRG 131 (394)
Q Consensus 53 p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~-D~~~~~yRd~~~~lsrG 131 (394)
+.....+++++++++|++|+++|.||+++..++++|+|.||+|++.||||++||+..+|+++ ||++|+||||+++|++|
T Consensus 18 ~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G 97 (358)
T COG1071 18 PGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARG 97 (358)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecC
Confidence 33445899999999999999999999999999999999889999999999999999999966 99999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCCC-eEEEEEcccccccchHH
Q 016175 132 GTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDET-VTFALYGDGAANQGQLF 210 (394)
Q Consensus 132 ~~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~-~vv~l~GDGa~~eG~~~ 210 (394)
+|+..+|++++|+++|+|+||+||||+++++.|+++.+|+||.|+|+|+|+|+|.|+++.+. +++|++|||+++||+||
T Consensus 98 ~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~Fh 177 (358)
T COG1071 98 VPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFH 177 (358)
T ss_pred CCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999555 99999999999999999
Q ss_pred HHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEE
Q 016175 211 EALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILE 287 (394)
Q Consensus 211 Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe 287 (394)
|+||||+.|+|||||||+||+|+||++...++..+.++.++ +| +|+++|||||+.+|++++++|++++|+ +||+|||
T Consensus 178 EalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE 257 (358)
T COG1071 178 EALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIE 257 (358)
T ss_pred HHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99999999999999999999999998877777766677687 56 999999999999999999999999999 8999999
Q ss_pred EEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 016175 288 MDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSE 367 (394)
Q Consensus 288 ~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~~ 367 (394)
+.|||+.|||++||+++||+++|+++|+ ++|||.+++++|++.|+||++++++|+++++++|++|+++|+++|.|++++
T Consensus 258 ~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~ 336 (358)
T COG1071 258 AVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSE 336 (358)
T ss_pred EEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhH
Confidence 9999999999999988999999999997 599999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCc
Q 016175 368 LFTNVYVKGYGV 379 (394)
Q Consensus 368 ~~~~vy~~~~~~ 379 (394)
+|++||++.++.
T Consensus 337 ~~~~Vy~~~~~~ 348 (358)
T COG1071 337 LFEDVYAEGPPH 348 (358)
T ss_pred hhhcccccCChh
Confidence 999999987753
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=8.4e-86 Score=658.29 Aligned_cols=348 Identities=86% Similarity=1.391 Sum_probs=330.6
Q ss_pred ceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhh
Q 016175 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCT 126 (394)
Q Consensus 47 ~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~ 126 (394)
.++...|+....+|+++++++|++|+++|.||+++..++++|++.||+|++.||||++||++.+|+++||++++||+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~ 94 (362)
T PLN02269 15 GHLCDPPSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCT 94 (362)
T ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHH
Confidence 33443444456889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccccccc
Q 016175 127 FLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ 206 (394)
Q Consensus 127 ~lsrG~~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~e 206 (394)
+|+||.++..+|+|++|+++|+++||+||||+++++.||++.+++||+|+|+|+|+|+|.|+++.+.+++|++|||+++|
T Consensus 95 ~la~G~~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~e 174 (362)
T PLN02269 95 HLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQ 174 (362)
T ss_pred HHHcCCCHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhcCcccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEE
Q 016175 207 GQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMIL 286 (394)
Q Consensus 207 G~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g~~~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lI 286 (394)
|.|||+||+|+.|+||+||||+||+|+|+|+.+++...+.++++++++|+++|||+|+.+|+++++.|++++|++||+||
T Consensus 175 G~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lI 254 (362)
T PLN02269 175 GQLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVL 254 (362)
T ss_pred CHHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999998888877888888877999999999999999999999999988889999
Q ss_pred EEEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 016175 287 EMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPS 366 (394)
Q Consensus 287 e~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~ 366 (394)
|+.|||++|||++||+.+||+++|++.|+.++|||.+|+++|+++|+||++++++|+++++++|++++++|+++|.|+++
T Consensus 255 e~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~ 334 (362)
T PLN02269 255 EMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPS 334 (362)
T ss_pred EEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999999987899999999997569999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcccccCccccccccCC
Q 016175 367 ELFTNVYVKGYGVEVFGADRKEVRSALP 394 (394)
Q Consensus 367 ~~~~~vy~~~~~~~~~~~~~~~~~~~~~ 394 (394)
++|++||++..+.+.+|++.+.....+|
T Consensus 335 ~~~~~vy~~~~~~~~~~~~~~~~~~~~~ 362 (362)
T PLN02269 335 ELFTNVYVKGLGVESYGADRKEVRVVLP 362 (362)
T ss_pred HHHhhcccCCCCCceecCCcceecCcCC
Confidence 9999999988888889999888776655
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=4.2e-79 Score=607.37 Aligned_cols=321 Identities=38% Similarity=0.704 Sum_probs=307.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhhHhhcCC
Q 016175 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (394)
Q Consensus 53 p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~lsrG~ 132 (394)
++....+|+++++++|+.|+++|.||+++..++++|++.||+|+++||||++||++.+|+++|+++++||+|+++|+||.
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~ 90 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGV 90 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCC
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCC-------CCCeEEEEEcccccc
Q 016175 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (394)
Q Consensus 133 ~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~l~GDGa~~ 205 (394)
++.++|+|++|+++|+++||+||||+++++.++++.+|+||+++|+|+|+|+|.|+++ ++++|+|++|||+++
T Consensus 91 ~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 170 (341)
T CHL00149 91 PPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN 170 (341)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh
Confidence 9999999999999999999999999999889999999999999999999999999887 588999999999999
Q ss_pred cchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CC
Q 016175 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (394)
Q Consensus 206 eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~g 282 (394)
+|++||+||+|++|+||+||||+||+|+++++...+...+++++++ +| +++++|||+|+.+|+++++.|++++|+ ++
T Consensus 171 ~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~g 250 (341)
T CHL00149 171 NGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDG 250 (341)
T ss_pred hcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999877776677899988 56 999999999999999999999999999 89
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 016175 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPM 362 (394)
Q Consensus 283 P~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~ 362 (394)
|+|||+.|||+.|||++|++. ||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.
T Consensus 251 P~lIev~tyR~~gHs~~D~~~-YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~ 328 (341)
T CHL00149 251 PTLIEALTYRFRGHSLADPDE-LRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPE 328 (341)
T ss_pred CEEEEEEEecCCCcCCCCCcc-CCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999875 99999999997 6999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccC
Q 016175 363 PEPSELFTNVYVK 375 (394)
Q Consensus 363 p~~~~~~~~vy~~ 375 (394)
|+++++|++||++
T Consensus 329 p~~~~~~~~vy~~ 341 (341)
T CHL00149 329 PNISDLKKYLFAD 341 (341)
T ss_pred CCHHHHHhhcccC
Confidence 9999999999974
No 5
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=8e-78 Score=611.87 Aligned_cols=324 Identities=41% Similarity=0.756 Sum_probs=310.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhhHhhcCC
Q 016175 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (394)
Q Consensus 53 p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~lsrG~ 132 (394)
|.....+|+++++++|++|+++|.||+++..++++|++.||+|+++|||+++||+.++|+++||++++||+|+++|+||.
T Consensus 77 ~~~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~ 156 (433)
T PLN02374 77 SASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGV 156 (433)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCC-------CCCeEEEEEcccccc
Q 016175 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (394)
Q Consensus 133 ~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~l~GDGa~~ 205 (394)
++.++|+|++|+++++++|++|+||+++++.++++.+++||+++|+|+|+|+|.|+++ ++++|||++|||+++
T Consensus 157 ~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 236 (433)
T PLN02374 157 PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCN 236 (433)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999999999999999999999999999875 478999999999999
Q ss_pred cchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CC
Q 016175 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (394)
Q Consensus 206 eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~g 282 (394)
+|+|||+||+|+.|+||+||||+||+|+|+++...+...+++++++ +| +|+++|||+|+.+|++++++|++++|+ ++
T Consensus 237 eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~g 316 (433)
T PLN02374 237 NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEG 316 (433)
T ss_pred cChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999888777777898887 56 999999999999999999999999999 89
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 016175 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPM 362 (394)
Q Consensus 283 P~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~ 362 (394)
|+|||+.|||++|||++|++. ||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++++++|+++|.
T Consensus 317 P~LIe~~tyR~~GHs~~D~~~-YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~ 394 (433)
T PLN02374 317 PTLVECETYRFRGHSLADPDE-LRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPL 394 (433)
T ss_pred CEEEEEEEEecCCcCCCCccc-cCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999885 99999999997 6999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCC
Q 016175 363 PEPSELFTNVYVKGYG 378 (394)
Q Consensus 363 p~~~~~~~~vy~~~~~ 378 (394)
|+++++|++||++..+
T Consensus 395 P~~~~~~~~vy~~~~~ 410 (433)
T PLN02374 395 PPRSQLLENVFADPKG 410 (433)
T ss_pred CCHHHHHhccccCCcC
Confidence 9999999999997653
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.2e-77 Score=589.99 Aligned_cols=312 Identities=53% Similarity=0.935 Sum_probs=302.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhhHhhcCCCHHHHHHH
Q 016175 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSE 140 (394)
Q Consensus 61 ~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~lsrG~~~~~vlae 140 (394)
+|+++++|++|+++|.||+++..++++|++.||+|++.||||++||++.+|+++||++++||+|+++|+||.++.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCC
Q 016175 141 LMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD 220 (394)
Q Consensus 141 l~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~ 220 (394)
++|+++++++||+||||+++++.|+++.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.+||+||+|++|+
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCC
Q 016175 221 LPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (394)
Q Consensus 221 LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs 297 (394)
||+||||+||+|+++++...+...+++++++ +| +|+++|||+|+++|++++++|++++|+ ++|+|||+.|||.+|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 9999999999999999887777777899888 56 999999999999999999999999998 89999999999999999
Q ss_pred CCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccccc
Q 016175 298 MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYV 374 (394)
Q Consensus 298 ~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~~~~~~vy~ 374 (394)
++|++. ||+++|++.|+ ++|||.+|+++|+++|++|++++++++++++++|++++++|++.|.|+++++|+|||+
T Consensus 241 ~~D~~~-Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 241 MSDPAK-YRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred CCCccc-cCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 999885 99999999997 6999999999999999999999999999999999999999999999999999999996
No 7
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.9e-72 Score=558.93 Aligned_cols=309 Identities=30% Similarity=0.531 Sum_probs=294.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhhHhhcCCCHH
Q 016175 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLL 135 (394)
Q Consensus 56 ~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~lsrG~~~~ 135 (394)
.+.+|+++++++|++|+++|.||+++..++++|+| ||+|+++||||++||++.+|+++|+++++||+|+++|+||.++.
T Consensus 18 ~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~ 96 (341)
T TIGR03181 18 APDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLV 96 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHH
Confidence 45789999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHH
Q 016175 136 EVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215 (394)
Q Consensus 136 ~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~ 215 (394)
++|+|++|+.+|.+ ..++.|+++.+++||.++|+|+|+|+|.|+.+++++|||++|||++++|.+||+||+
T Consensus 97 ~~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~t 167 (341)
T TIGR03181 97 EILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNF 167 (341)
T ss_pred HHHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHH
Confidence 99999999876632 146679999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCeEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeee
Q 016175 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (394)
Q Consensus 216 Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (394)
|++|+||+||||+||+|+++++.......++|.+++ +| +++++|||+|+.+|+++++.|++++++ ++|+|||+.|||
T Consensus 168 A~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R 247 (341)
T TIGR03181 168 AGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYR 247 (341)
T ss_pred HhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 999999999999999999998876666667898887 56 999999999999999999999999998 899999999999
Q ss_pred cCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccc
Q 016175 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNV 372 (394)
Q Consensus 293 ~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~~~~~~v 372 (394)
..||+++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.|+++++|+||
T Consensus 248 ~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~v 326 (341)
T TIGR03181 248 LGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHV 326 (341)
T ss_pred CCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhc
Confidence 99999999887899999999997 69999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 016175 373 YVK 375 (394)
Q Consensus 373 y~~ 375 (394)
|++
T Consensus 327 y~~ 329 (341)
T TIGR03181 327 YAE 329 (341)
T ss_pred ccC
Confidence 996
No 8
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=2.7e-72 Score=550.26 Aligned_cols=296 Identities=40% Similarity=0.671 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhhHhhcCCCHHHHHHHHhCCCCCCC
Q 016175 70 QMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCS 149 (394)
Q Consensus 70 ~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~lsrG~~~~~vlael~g~~~~~~ 149 (394)
+|.++|+||+.+..++..+++.||+|++.|||++++++..+|+++||++++||||+++|++|.++.++|+|++|+..+.+
T Consensus 2 ~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~ 81 (300)
T PF00676_consen 2 RMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHG 81 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTT
T ss_pred chHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCC
Confidence 45666666666655555555679999999999999999999999999999999999999999999999999999995544
Q ss_pred CCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEc
Q 016175 150 HGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (394)
Q Consensus 150 ~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~N 229 (394)
.|+. ++|...++.++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|++|+|||||||+|
T Consensus 82 g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveN 160 (300)
T PF00676_consen 82 GGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVEN 160 (300)
T ss_dssp TTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred CCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEec
Confidence 4444 445557777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCC
Q 016175 230 NHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (394)
Q Consensus 230 N~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR 306 (394)
|+|+|+|+...++..++++.++ .| +|+++|||+|+.+|++++++|++++|+ +||+|||+.|||.+|||++|++..||
T Consensus 161 N~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr 240 (300)
T PF00676_consen 161 NQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYR 240 (300)
T ss_dssp ESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTS
T ss_pred CCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccC
Confidence 9999999999988888888888 56 999999999999999999999999999 99999999999999999999888999
Q ss_pred CchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 016175 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPS 366 (394)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~ 366 (394)
+++|++.|++.+|||.+++++|+++|++|++++++|+++++++|++++++|+++|.|+||
T Consensus 241 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 241 SPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999887778999999999999999999999999999999999999999999999986
No 9
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=8.3e-71 Score=538.48 Aligned_cols=290 Identities=46% Similarity=0.775 Sum_probs=279.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhhHhhcCCCHHHHHHHHhCCCC
Q 016175 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKD 146 (394)
Q Consensus 67 l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~lsrG~~~~~vlael~g~~~ 146 (394)
+|++|+++|.||+++..++++|++.||+|++.|||+++||+..+|+++|+++++||+|+++|+||.++.++|+|++|+++
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 58999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEE
Q 016175 147 GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226 (394)
Q Consensus 147 ~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~v 226 (394)
++++|++||||+++++.++++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.+||+||+|+.++||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCC
Q 016175 227 CENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGS 303 (394)
Q Consensus 227 v~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~ 303 (394)
|+||+|+++++.......+++.+++ +| +++++|||+|+++|++++++|++++|+ ++|+|||+.|||.+|||++|++.
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 9999999998877766677898887 56 999999999999999999999999998 89999999999999999998888
Q ss_pred CCCCchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016175 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKA 357 (394)
Q Consensus 304 ~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A 357 (394)
.||+++|++.|+ ++|||.+|+++|+++|++|++++++++++++++|++++++|
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999999996 79999999999999999999999999999999999999875
No 10
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.2e-63 Score=470.65 Aligned_cols=325 Identities=31% Similarity=0.477 Sum_probs=311.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhhHhhcC
Q 016175 52 APSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRG 131 (394)
Q Consensus 52 ~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~lsrG 131 (394)
.++..+.++.+..++||++|.++..+|..+-.-++||+| .|+....|.|++-+|.+++|.+.|.+++.||..|+.|.||
T Consensus 76 ~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRg 154 (432)
T KOG1182|consen 76 DKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRG 154 (432)
T ss_pred CcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcC
Confidence 356778999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCC-CeEEEEEcccccccchHH
Q 016175 132 GTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE-TVTFALYGDGAANQGQLF 210 (394)
Q Consensus 132 ~~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~-~~vv~l~GDGa~~eG~~~ 210 (394)
.++.+.+.+.+|+..+..+||++++|+++.+.||+.-+++|..|+|.|+|+|+|.|+++.+ .++||++|||+++||++|
T Consensus 155 ftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~H 234 (432)
T KOG1182|consen 155 FTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAH 234 (432)
T ss_pred ccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchh
Confidence 9999999999999999999999999999999999999999999999999999999977665 899999999999999999
Q ss_pred HHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEE
Q 016175 211 EALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILE 287 (394)
Q Consensus 211 Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe 287 (394)
.++|||+....|+||+|-||+|+|||+.+++...+-++.+| +| +..++|||||+.+||.|+++|.+.+-. ++|+|||
T Consensus 235 A~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliE 314 (432)
T KOG1182|consen 235 AAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIE 314 (432)
T ss_pred hhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhh
Confidence 99999999999999999999999999999998887788888 77 999999999999999999999999987 8999999
Q ss_pred EEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 016175 288 MDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSE 367 (394)
Q Consensus 288 ~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~~ 367 (394)
+.|||...||+||+.+.||+.+|++.|...+.||.+||+++.++|+|++++..++.++++++|-++++.|++-++|.+.+
T Consensus 315 amtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~ 394 (432)
T KOG1182|consen 315 AMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTE 394 (432)
T ss_pred hhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCC
Q 016175 368 LFTNVYVKGY 377 (394)
Q Consensus 368 ~~~~vy~~~~ 377 (394)
+|.+||...+
T Consensus 395 lF~dVYd~~P 404 (432)
T KOG1182|consen 395 LFEDVYDEMP 404 (432)
T ss_pred HHHHHhhhhh
Confidence 9999998544
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=5.1e-59 Score=506.76 Aligned_cols=327 Identities=20% Similarity=0.281 Sum_probs=287.7
Q ss_pred CCCceeeeCC-------CCccceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHH
Q 016175 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (394)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~v 105 (394)
.|.++-+|.+ ..|...++|.+.. .+|+++++++|+.|+++|.||+++...|..+++ | ++.|||++.+
T Consensus 155 Ycg~ig~E~~hi~~~~er~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Kr--f--~~eG~Ea~i~ 228 (924)
T PRK09404 155 YCGSIGVEYMHISDPEERRWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKR--F--SLEGGESLIP 228 (924)
T ss_pred hcccHhheeccCCCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--c--cccchhhHHH
Confidence 4666666532 1488888886433 899999999999999999999999999998775 2 4699999999
Q ss_pred HHHh------ccCCCCeeec-CCcchhhHhhc--CCCHHHHHHHHhCCC-------CCCCC----------CCCCccCcc
Q 016175 106 GMEA------GITKKDSIIT-AYRDHCTFLGR--GGTLLEVFSELMGRK-------DGCSH----------GKGGSMHFY 159 (394)
Q Consensus 106 g~~~------aL~~~D~~~~-~yRd~~~~lsr--G~~~~~vlael~g~~-------~~~~~----------G~ggs~H~~ 159 (394)
|+.. ++..+|++++ +||+|+++|++ |+++.++|+|++|++ +|.++ |++|+||+.
T Consensus 229 gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~ 308 (924)
T PRK09404 229 MLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLS 308 (924)
T ss_pred HHHHHHHHHHhCCCCCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEee
Confidence 9988 5658899999 79999999995 999999999999987 33333 556666665
Q ss_pred CCCCCccCCcCCccchhhHHHHHHHHhhhCCCC------CeEEEEEccccc-ccchHHHHHHHHHHCCCC---eEEEEEc
Q 016175 160 KKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE------TVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCEN 229 (394)
Q Consensus 160 ~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~------~~vv~l~GDGa~-~eG~~~Ealn~Aa~~~Lp---vI~vv~N 229 (394)
.. .+.++||.+.|+|+|+|+|.|+++.+ .++||++||||+ +||.|||+||||++|+|| +||||+|
T Consensus 309 l~-----~npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveN 383 (924)
T PRK09404 309 LA-----FNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVIN 383 (924)
T ss_pred cc-----CCccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEe
Confidence 32 24589999999999999999998877 799999999997 899999999999999998 9999999
Q ss_pred CCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCC
Q 016175 230 NHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (394)
Q Consensus 230 N~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR 306 (394)
|+|+++|+...+.+.....+++ .| +|+++|||+|+++|++|++.|++++|+ +||+|||+.|||++|||++|++. ||
T Consensus 384 Nq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr 462 (924)
T PRK09404 384 NQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FT 462 (924)
T ss_pred CCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CC
Confidence 9999999988777666566777 56 999999999999999999999999999 99999999999999999999986 99
Q ss_pred CchhhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccccc
Q 016175 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYV 374 (394)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~~~~~~vy~ 374 (394)
+++|++.|++.+||+.+|+++|+++|++|++++++|+++++++|++|+++|++. .+.++++.+|.
T Consensus 463 ~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~---~~~~~~~~~~~ 527 (924)
T PRK09404 463 QPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEW---RPADWLAGDWS 527 (924)
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---Ccccccccccc
Confidence 999999998678999999999999999999999999999999999999999876 35666777775
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=3.9e-52 Score=451.22 Aligned_cols=326 Identities=18% Similarity=0.234 Sum_probs=284.7
Q ss_pred CCCceeeeCC-------CCccceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccccCCchHHHH
Q 016175 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVA 104 (394)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~-g~i~gf~h~~~GqEa~~ 104 (394)
.|.++-+|.+ ..|...++|.+. ...+|+++.+++++.++.+-.||..+...|.. |++ . -.|.|...
T Consensus 154 YCg~ig~E~~hi~~~~~r~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRF---s--lEG~esli 227 (929)
T TIGR00239 154 YCGSIGAEYMHITSTEEKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRF---S--LEGLDALV 227 (929)
T ss_pred hcCcceeeeecCCCHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee---e--cccHHHHH
Confidence 5666666632 148888998765 77999999999999999999999999888764 332 2 37999988
Q ss_pred HHHHhccC------CCCeeecC-CcchhhHhh--cCCCHHHHHHHHhCCCCC-CCCCCCCc-cCccC-----------CC
Q 016175 105 IGMEAGIT------KKDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKDG-CSHGKGGS-MHFYK-----------KD 162 (394)
Q Consensus 105 vg~~~aL~------~~D~~~~~-yRd~~~~ls--rG~~~~~vlael~g~~~~-~~~G~ggs-~H~~~-----------~~ 162 (394)
.++...+. -+|++++. ||+|..+|+ .|+++.++|+|+.|+..+ .+.|+|++ +|++. ..
T Consensus 228 p~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~ 307 (929)
T TIGR00239 228 PMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVH 307 (929)
T ss_pred HHHHHHHHHHHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcce
Confidence 87766554 46999997 999999999 899999999999998765 45689998 99984 33
Q ss_pred CCccCCcCCccchhhHHHHHHHHhhhCCC------CCeEEEEEccccc-ccchHHHHHHHHHHCCCCe---EEEEEcCCc
Q 016175 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSKD------ETVTFALYGDGAA-NQGQLFEALNIAALWDLPA---ILVCENNHY 232 (394)
Q Consensus 163 ~~~~~~~g~lG~~lp~A~G~A~A~k~~~~------~~~vv~l~GDGa~-~eG~~~Ealn~Aa~~~Lpv---I~vv~NN~~ 232 (394)
.++.++.++||++.|+|+|.|+|.|+++. +.++||++|||++ +||.|||+||||++|+||+ ||||+||+|
T Consensus 308 ~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqy 387 (929)
T TIGR00239 308 LALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQI 387 (929)
T ss_pred eeecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCE
Confidence 45678999999999999999999998765 5799999999995 8999999999999999997 999999999
Q ss_pred cccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCCCch
Q 016175 233 GMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRD 309 (394)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~ 309 (394)
+++|+...+.+.+...++| .| +|+++|||+|+++|++|++.|++++|+ +||+|||+.|||++|||++|++..||+ +
T Consensus 388 g~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~ 466 (929)
T TIGR00239 388 GFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-L 466 (929)
T ss_pred EEEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-H
Confidence 9999877766666566677 56 999999999999999999999999999 999999999999999999999987887 8
Q ss_pred hhhhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 016175 310 EISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEP 365 (394)
Q Consensus 310 e~~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~ 365 (394)
|++.|++.+||+.+|+++|+++|++|++++++|+++++++|++|++.++..+.|..
T Consensus 467 ~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~ 522 (929)
T TIGR00239 467 MYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNT 522 (929)
T ss_pred HHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence 88888767999999999999999999999999999999999999999988665544
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=6.8e-48 Score=368.67 Aligned_cols=213 Identities=24% Similarity=0.334 Sum_probs=195.1
Q ss_pred CCchHHHHHHHHhccCC------CCeeecC-CcchhhHhh--cCCCHHHHHHHHhCCCC---CCCCCCCCccCccCCC--
Q 016175 97 YDGQEAVAIGMEAGITK------KDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKD---GCSHGKGGSMHFYKKD-- 162 (394)
Q Consensus 97 ~~GqEa~~vg~~~aL~~------~D~~~~~-yRd~~~~ls--rG~~~~~vlael~g~~~---~~~~G~ggs~H~~~~~-- 162 (394)
+.|+|++.+++...|.+ +|++++. ||+|..+|+ +|+++.++|+|+.|+.+ +.+.+++.++|++.+.
T Consensus 17 ~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~~~~ 96 (265)
T cd02016 17 LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDR 96 (265)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccCccc
Confidence 69999999999999998 7999997 999999999 99999999999999877 5556777789997553
Q ss_pred ---------CCccCCcCCccchhhHHHHHHHHhhhCC-----CCCeEEEEEcccc-cccchHHHHHHHHHHCCCC---eE
Q 016175 163 ---------SGFYGGHGIVGAQIPLGCGLAFAQKYSK-----DETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AI 224 (394)
Q Consensus 163 ---------~~~~~~~g~lG~~lp~A~G~A~A~k~~~-----~~~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~Lp---vI 224 (394)
.++.+++++||.++|+|+|+|+|.|+++ .+.++||++|||+ .+||.|||+||+|++|+|| +|
T Consensus 97 ~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~i 176 (265)
T cd02016 97 KTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTI 176 (265)
T ss_pred ccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEE
Confidence 3467899999999999999999999998 4789999999999 5899999999999999999 99
Q ss_pred EEEEcCCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCC
Q 016175 225 LVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDP 301 (394)
Q Consensus 225 ~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~ 301 (394)
|||+||+|+++|+.+++++.+..++++ .| +|+++|||+|+++|++++++|++++|+ +||+|||+.|||++||+++|+
T Consensus 177 fvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D~ 256 (265)
T cd02016 177 HIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELDE 256 (265)
T ss_pred EEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcCC
Confidence 999999999999998888777778887 56 999999999999999999999999999 999999999999999999999
Q ss_pred CCCCCCchh
Q 016175 302 GSTYRTRDE 310 (394)
Q Consensus 302 ~~~YR~~~e 310 (394)
++ |++|.+
T Consensus 257 p~-~t~p~m 264 (265)
T cd02016 257 PS-FTQPLM 264 (265)
T ss_pred cc-ccCCCc
Confidence 86 888764
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=4.9e-35 Score=311.41 Aligned_cols=312 Identities=20% Similarity=0.261 Sum_probs=256.9
Q ss_pred CccceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccccCCchHHHHHHHHhccC------CCCe
Q 016175 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGIT------KKDS 116 (394)
Q Consensus 44 ~~~~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~-g~i~gf~h~~~GqEa~~vg~~~aL~------~~D~ 116 (394)
.|.+.++|.| ...+|.++-+.+++++...-.||.++...|-. +++ +-.|.|....-+...|. .+.+
T Consensus 477 ~W~Q~rvE~~--~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRF-----slEG~Es~iplld~~~~~aa~~~l~ev 549 (1228)
T PRK12270 477 RWLQERVERP--HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRF-----SLEGGESLIPLLDAVLDQAAEHGLDEV 549 (1228)
T ss_pred HHHHHHhhCC--CCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceee-----eecchhhHHHHHHHHHHHHHhcCCceE
Confidence 4888899876 66789999999999999999999988877753 332 23688876665555554 2456
Q ss_pred eec-CCcchhhHhhc--CCCHHHHHHHHhCCCCC-CCCCCCCc-cCccCCCC-----------CccCCcCCccchhhHHH
Q 016175 117 IIT-AYRDHCTFLGR--GGTLLEVFSELMGRKDG-CSHGKGGS-MHFYKKDS-----------GFYGGHGIVGAQIPLGC 180 (394)
Q Consensus 117 ~~~-~yRd~~~~lsr--G~~~~~vlael~g~~~~-~~~G~ggs-~H~~~~~~-----------~~~~~~g~lG~~lp~A~ 180 (394)
+++ .||++..+|+. |++..++|.||-|+-+. ...|.|+. +|++.... .+..+.++|.+.-|+.-
T Consensus 550 vigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVle 629 (1228)
T PRK12270 550 VIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLE 629 (1228)
T ss_pred EecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhh
Confidence 665 89999999997 99999999999998654 45677765 88753210 12357899999999999
Q ss_pred HHHHHhhhCC---C---CCeEEEEEcccc-cccchHHHHHHHHHHCCCC---eEEEEEcCCccccccccccccCcchhhh
Q 016175 181 GLAFAQKYSK---D---ETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPSYYKR 250 (394)
Q Consensus 181 G~A~A~k~~~---~---~~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~Lp---vI~vv~NN~~~i~~~~~~~~~~~~~~~~ 250 (394)
|++.|.+..- . ..+.|+++||++ .+||+++|+||+|.+|++| +||||.||++|++|+.....+..-..+.
T Consensus 630 GivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ 709 (1228)
T PRK12270 630 GIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDV 709 (1228)
T ss_pred hhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHH
Confidence 9999987532 2 347899999999 8999999999999999999 8999999999999987755444311222
Q ss_pred --cCcccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHH
Q 016175 251 --GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327 (394)
Q Consensus 251 --g~~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~ 327 (394)
+.++|+++|||+|+++|.++++.|++++++ ++|++|++.|||++||+++|+|+ +.+|..++.+...+..-+.|++.
T Consensus 710 ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~ 788 (1228)
T PRK12270 710 AKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEA 788 (1228)
T ss_pred HhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHH
Confidence 344999999999999999999999999999 99999999999999999999887 88888888776656667899999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 016175 328 ILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMP 363 (394)
Q Consensus 328 L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p 363 (394)
|+.+|.+|++|++++..+.+++++.++.+.++....
T Consensus 789 Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~ 824 (1228)
T PRK12270 789 LIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKK 824 (1228)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999988765433
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.7e-34 Score=305.87 Aligned_cols=230 Identities=20% Similarity=0.205 Sum_probs=189.0
Q ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccC---CCCeee--cCCc
Q 016175 48 HQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT---KKDSII--TAYR 122 (394)
Q Consensus 48 ~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~---~~D~~~--~~yR 122 (394)
.++..|.....|+.++|.++ ...+|.+... ..+++.|++|++.|+ +.++++.++. +.|+++ +.||
T Consensus 4 ~~~~~p~d~~~l~~~~l~~l---~~~ir~~~~~-----~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr 73 (581)
T PRK12315 4 EKINSPADLKKLSLDELEQL---ASEIRTALLE-----KDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQ 73 (581)
T ss_pred hhcCCHHHHhhCCHHHHHHH---HHHHHHHHHH-----HHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCc
Confidence 34556777778887777766 4577777543 334556899999999 5566666776 789999 8999
Q ss_pred chhhHhhcCCCHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccc
Q 016175 123 DHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (394)
Q Consensus 123 d~~~~lsrG~~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDG 202 (394)
+|++.|.+|.++..++++++|+.+|++++++ |.|.. ..+|++|.++|+|+|+|+|.|+++.+++|||++|||
T Consensus 74 ~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG 145 (581)
T PRK12315 74 SYPHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDG 145 (581)
T ss_pred hHHHHHHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECch
Confidence 9999999999999999999999999998887 44422 256889999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccc---------cccCcchhhhc-Cc-ccEEEE-eCCCHHHHHHH
Q 016175 203 AANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR---------AAKSPSYYKRG-DY-VPGLKV-DGMDALAVKQA 270 (394)
Q Consensus 203 a~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~---------~~~~~~~~~~g-~~-~~~~~V-DG~D~~av~~a 270 (394)
++++|++|||||+|+.|++|+||||+||+|+++++... .....+...+. +| |+++.| ||||+.+++++
T Consensus 146 ~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a 225 (581)
T PRK12315 146 SLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEA 225 (581)
T ss_pred hhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHH
Confidence 99999999999999999999999999999999977642 11122223333 44 888888 99999999999
Q ss_pred HHHHHHHHhhCCCEEEEEEeeecCCCCC
Q 016175 271 CKFAKEHALKNGPMILEMDTYRYHGHSM 298 (394)
Q Consensus 271 ~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (394)
+++|.+. +||++|+++|+|++|...
T Consensus 226 ~~~a~~~---~gP~~i~~~T~kG~G~~~ 250 (581)
T PRK12315 226 FKEVKDI---DHPIVLHIHTLKGKGYQP 250 (581)
T ss_pred HHHHHhC---CCCEEEEEEeecCCCCCh
Confidence 9886532 899999999999999753
No 16
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-33 Score=256.20 Aligned_cols=221 Identities=20% Similarity=0.233 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeee------cCCcchhhHhhcCCC--
Q 016175 62 KELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII------TAYRDHCTFLGRGGT-- 133 (394)
Q Consensus 62 e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~------~~yRd~~~~lsrG~~-- 133 (394)
.+..+|-+.+..||+-..++.... |+.| .|++.+++.+.++|+..-+-+ ..-||+ ++|||||.
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~------~~GH--~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDr-fiLSKGHaa~ 75 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANA------GSGH--VGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDR-FILSKGHAAP 75 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccc------CCCC--cCccchHHHHHHHHHHHHhccCCCCCCCCCCCe-EEEecccchH
Confidence 345556667788999887766543 4557 899999999999988542222 256999 99999997
Q ss_pred -HHHHHHH--HhCCCCCCCCCCCCccCccCCCC----CccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccccccc
Q 016175 134 -LLEVFSE--LMGRKDGCSHGKGGSMHFYKKDS----GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ 206 (394)
Q Consensus 134 -~~~vlae--l~g~~~~~~~G~ggs~H~~~~~~----~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~e 206 (394)
+|.+|++ +|.+++..++++.+|-.+++|+. ++..++|+||+++++|+|+|++.|+++.+..|+++.|||+++|
T Consensus 76 AlYa~Lae~G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~E 155 (243)
T COG3959 76 ALYATLAEKGYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDE 155 (243)
T ss_pred HHHHHHHHcCCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCccccc
Confidence 7888888 68888888888888844444544 5667899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHCCCC-eEEEEEcCCccccccccccccCcchhhh-cCc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCC
Q 016175 207 GQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR-GDY-VPGLKVDGMDALAVKQACKFAKEHALKNGP 283 (394)
Q Consensus 207 G~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~~~~~~~~-g~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP 283 (394)
|++|||+.+|+.++|. +|.|++-|..+++..+++..+..++.++ -+| |.+++|||||++++.+|+..+..- +++|
T Consensus 156 G~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~--~~rP 233 (243)
T COG3959 156 GQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS--KGRP 233 (243)
T ss_pred ccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc--CCCC
Confidence 9999999999999999 6888887887776655554433334333 244 888999999999999988876642 1589
Q ss_pred EEEEEEeeec
Q 016175 284 MILEMDTYRY 293 (394)
Q Consensus 284 ~lIe~~t~R~ 293 (394)
.+|.++|.++
T Consensus 234 ~~IIa~Tvkg 243 (243)
T COG3959 234 TVIIAKTVKG 243 (243)
T ss_pred eEEEEecccC
Confidence 9999999874
No 17
>PRK12754 transketolase; Reviewed
Probab=99.97 E-value=3.7e-30 Score=275.01 Aligned_cols=232 Identities=19% Similarity=0.149 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeee------cCCcchhhHhhcCCC---HHHHHHHH
Q 016175 71 MATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII------TAYRDHCTFLGRGGT---LLEVFSEL 141 (394)
Q Consensus 71 m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~------~~yRd~~~~lsrG~~---~~~vlael 141 (394)
...+|.+...+.... +..| .|...+++.+..+|+..-+-+ +..||+ ++||+||. +|.+|+..
T Consensus 8 ~~~iR~~~~~~~~~a------~sGH--~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDR-fvlS~GH~~~~lYa~l~~~ 78 (663)
T PRK12754 8 ANAIRALSMDAVQKA------KSGH--PGAPMGMADIAEVLWRDFLNHNPQNPSWADRDR-FVLSNGHGSMLIYSLLHLT 78 (663)
T ss_pred HHHHHHHHHHHHHhc------CCCC--cccchHHHHHHHHHHHHhcCCCccCCCCCCCCe-EEEeCccHHHHHHHHHHHc
Confidence 445676665554332 4567 788888888888887331111 246999 99999997 67777753
Q ss_pred ---hCCCCCCCCCCCCccCccCCCC----CccCCcCCccchhhHHHHHHHHhhhCC----------CCCeEEEEEccccc
Q 016175 142 ---MGRKDGCSHGKGGSMHFYKKDS----GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAA 204 (394)
Q Consensus 142 ---~g~~~~~~~G~ggs~H~~~~~~----~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~l~GDGa~ 204 (394)
+..++..++++.||.-.++|+. ++..++|+||+|++.|+|+|+|.|+.+ .+++|+|++|||++
T Consensus 79 G~~~~~e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel 158 (663)
T PRK12754 79 GYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCM 158 (663)
T ss_pred CCCCCHHHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchh
Confidence 4445556677777644444443 577799999999999999999999876 37899999999999
Q ss_pred ccchHHHHHHHHHHCCCC-eEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEE-EeCCCHHHHHHHHHHHHHHHhh
Q 016175 205 NQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLK-VDGMDALAVKQACKFAKEHALK 280 (394)
Q Consensus 205 ~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~-VDG~D~~av~~a~~~A~~~ar~ 280 (394)
+||++|||+++|+.|+|| +|+||+||+++++++.+.... .++.++. +| |++++ |||||+.++.+|+++|... .
T Consensus 159 ~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~~-~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~--~ 235 (663)
T PRK12754 159 MEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFT-DDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV--T 235 (663)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhccC-ccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc--C
Confidence 999999999999999999 689999999999998887663 4566665 55 99999 8999999999999887642 3
Q ss_pred CCCEEEEEEeeecCCCCCC--CCCCCCC--Cchhhhhh
Q 016175 281 NGPMILEMDTYRYHGHSMS--DPGSTYR--TRDEISGV 314 (394)
Q Consensus 281 ~gP~lIe~~t~R~~GHs~~--D~~~~YR--~~~e~~~~ 314 (394)
++|++|+++|+|++|.+.. .+..+.. +++|++..
T Consensus 236 ~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~~l~~~~~~~~ 273 (663)
T PRK12754 236 DKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALT 273 (663)
T ss_pred CCCEEEEEEeeeccCccccCCCccccCCCCCHHHHHHH
Confidence 7899999999999999853 2333332 45666654
No 18
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.97 E-value=8.1e-30 Score=273.32 Aligned_cols=232 Identities=22% Similarity=0.199 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeee------cCCcchhhHhhcCCC---HHHHHHHH
Q 016175 71 MATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII------TAYRDHCTFLGRGGT---LLEVFSEL 141 (394)
Q Consensus 71 m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~------~~yRd~~~~lsrG~~---~~~vlael 141 (394)
...+|..-..+.... +.+| .|...+++.+..+|+..-+.+ +..||+ ++||+||. +|.+|++.
T Consensus 4 ~~~iR~~~~~~~~~a------~~GH--~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDr-fvlS~GH~~~~lYa~l~~~ 74 (653)
T TIGR00232 4 ANAIRHLAVDAIQKA------KSGH--PGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDR-FVLSNGHGSMLLYSLLHLT 74 (653)
T ss_pred HHHHHHHHHHHHHhc------CCCC--ccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCe-EEEECccHHHHHHHHHHHc
Confidence 345676655554332 4567 888889998888887431111 247999 99999997 67777652
Q ss_pred --h-CCCCCCCCCCCCccCccCCCC----CccCCcCCccchhhHHHHHHHHhhhCC----------CCCeEEEEEccccc
Q 016175 142 --M-GRKDGCSHGKGGSMHFYKKDS----GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAA 204 (394)
Q Consensus 142 --~-g~~~~~~~G~ggs~H~~~~~~----~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~l~GDGa~ 204 (394)
+ ..++..++++.||..+++|+. ++..++|+||+|+++|+|+|+|.|+.+ .+++|+|++|||++
T Consensus 75 G~~~~~e~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l 154 (653)
T TIGR00232 75 GYDLSIEDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCL 154 (653)
T ss_pred CCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccc
Confidence 2 444556677777644444443 567789999999999999999999863 47799999999999
Q ss_pred ccchHHHHHHHHHHCCCC-eEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEE-eCCCHHHHHHHHHHHHHHHhh
Q 016175 205 NQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKV-DGMDALAVKQACKFAKEHALK 280 (394)
Q Consensus 205 ~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~V-DG~D~~av~~a~~~A~~~ar~ 280 (394)
+||++|||+++|+.|+|| +|+||+||+|+++++.+.... .++..+. +| |++++| ||||+.++.+|+++|... +
T Consensus 155 ~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~~-~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~--~ 231 (653)
T TIGR00232 155 QEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSFT-EDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKAS--K 231 (653)
T ss_pred cccHHHHHHHHHHHhCCCcEEEEEeCCCeeeccccccccC-ccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhC--C
Confidence 999999999999999999 788999999999999877653 4566654 55 999999 999999999988776531 1
Q ss_pred CCCEEEEEEeeecCCCCCCC--CCCCCC--Cchhhhhh
Q 016175 281 NGPMILEMDTYRYHGHSMSD--PGSTYR--TRDEISGV 314 (394)
Q Consensus 281 ~gP~lIe~~t~R~~GHs~~D--~~~~YR--~~~e~~~~ 314 (394)
++|++|+++|+|++|.+... +..++. +++++++.
T Consensus 232 ~~P~~I~~~T~~g~G~~~~e~~~~~H~~~~~~~~~~~~ 269 (653)
T TIGR00232 232 DKPTLIEVTTTIGFGSPNKAGTHGVHGAPLGDEDVKLT 269 (653)
T ss_pred CCCEEEEEEeeecccCcccCCCCcccCCCCCHHHHHHH
Confidence 48999999999999997543 333332 44555543
No 19
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.7e-29 Score=257.30 Aligned_cols=324 Identities=19% Similarity=0.314 Sum_probs=268.5
Q ss_pred CccceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCC------CCee
Q 016175 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITK------KDSI 117 (394)
Q Consensus 44 ~~~~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~------~D~~ 117 (394)
.|...++|.| +...+|.|+.+.++..+.+.-+||+.+...+..-+ -|.- .|-|...-||...+.. ++.+
T Consensus 232 nWir~k~EtP-~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seK--RFGL--EGcE~lIP~mK~iiDrS~elGVe~iv 306 (1017)
T KOG0450|consen 232 NWIRQKFETP-GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEK--RFGL--EGCEVLIPAMKTIIDRSSELGVESIV 306 (1017)
T ss_pred HHHHHhccCC-CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccc--cccc--cchhhhhhHHHHHhhhhhhcCchheE
Confidence 4777888877 78899999999999999999999999988887643 1333 6888888788777653 4666
Q ss_pred ec-CCcchhhHhhc--CCCHHHHHHHHhCCCCCCCCCCCCc-cCcc----CCCC----C----ccCCcCCccchhhHHHH
Q 016175 118 IT-AYRDHCTFLGR--GGTLLEVFSELMGRKDGCSHGKGGS-MHFY----KKDS----G----FYGGHGIVGAQIPLGCG 181 (394)
Q Consensus 118 ~~-~yRd~~~~lsr--G~~~~~vlael~g~~~~~~~G~ggs-~H~~----~~~~----~----~~~~~g~lG~~lp~A~G 181 (394)
++ .||++..+|+. -.++.++|.|+-|.+. ..-|.|+. +|++ .+.. + +..+.++|.+.-|+.+|
T Consensus 307 iGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~-~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~G 385 (1017)
T KOG0450|consen 307 IGMPHRGRLNVLANVVRKPLEQIFSEFSGLEA-ADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMG 385 (1017)
T ss_pred ecCCccchhHHHHHHHhhHHHHHHHhccCCCC-CcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeec
Confidence 66 89999999987 5689999999988433 22366665 7775 1211 1 34688999999999999
Q ss_pred HHHHhhhC-----CCCCeEEEEEcccc-cccchHHHHHHHHHHCCCC---eEEEEEcCCccccccccccccCcchhhh-c
Q 016175 182 LAFAQKYS-----KDETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPSYYKR-G 251 (394)
Q Consensus 182 ~A~A~k~~-----~~~~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~Lp---vI~vv~NN~~~i~~~~~~~~~~~~~~~~-g 251 (394)
...|.++- +.+...|.++||++ +.||.++|++.+..+.+.- .|+||.|||+|++|......+.| |++. +
T Consensus 386 KtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSsp-YcTDva 464 (1017)
T KOG0450|consen 386 KTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSP-YCTDVA 464 (1017)
T ss_pred hHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCC-CchhHH
Confidence 99998853 34568999999999 7999999999887766665 69999999999988765444444 4432 2
Q ss_pred --CcccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHH
Q 016175 252 --DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLI 328 (394)
Q Consensus 252 --~~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L 328 (394)
-..|.++||++|++||.-+++-|.++... ++.++|+++|||.+||++.|.|+ |+.|-+++.+++....+..|.+.|
T Consensus 465 r~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~-FTQPlMYk~I~k~~~~l~~Y~ekL 543 (1017)
T KOG0450|consen 465 RVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPM-FTQPLMYKQIRKHKPVLQKYAEKL 543 (1017)
T ss_pred HHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcc-ccchHHHHHHHcCCcHHHHHHHHH
Confidence 33788999999999999999999999877 99999999999999999999998 999999999998888899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccccccC
Q 016175 329 LAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVYVK 375 (394)
Q Consensus 329 ~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~~~~~~vy~~ 375 (394)
+++|.+|++|+++..+.+....++|++.++....--..++++.-|..
T Consensus 544 l~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~g 590 (1017)
T KOG0450|consen 544 LSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPG 590 (1017)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCCcc
Confidence 99999999999999999999999999999988665557787777653
No 20
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.97 E-value=1.4e-30 Score=258.04 Aligned_cols=233 Identities=21% Similarity=0.265 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeee------cCCcchhhHhhcCCC---HHHHHHH-
Q 016175 71 MATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII------TAYRDHCTFLGRGGT---LLEVFSE- 140 (394)
Q Consensus 71 m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~------~~yRd~~~~lsrG~~---~~~vlae- 140 (394)
...+|..-..+.... +..| .|...+++.+..+|+..-+.+ ...||+ ++||+||. +|.+|+.
T Consensus 5 a~~iR~~~~~~~~~a------~sGH--~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDr-fvlSkGH~~~~lYa~l~~~ 75 (332)
T PF00456_consen 5 ANTIRKLILDMVQKA------GSGH--PGSSLSAADILYALYFKVLRYDPKNPKWPNRDR-FVLSKGHASPALYAILALR 75 (332)
T ss_dssp HHHHHHHHHHHHHHH------T-S---SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-E-EEESSGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh------CCCC--CcchHHHHHHHHHHHhhccccCCccccCCCCCc-EEEeccchhHHHHHHHHHh
Confidence 446676666555443 4457 899999999998887543333 256999 99999997 7777776
Q ss_pred -H-hCCCCCCCCCCCCccCccCCCC----CccCCcCCccchhhHHHHHHHHhhhCC----------CCCeEEEEEccccc
Q 016175 141 -L-MGRKDGCSHGKGGSMHFYKKDS----GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAA 204 (394)
Q Consensus 141 -l-~g~~~~~~~G~ggs~H~~~~~~----~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~l~GDGa~ 204 (394)
+ +..+...++++.||..+++|+. ++..++|+||+|++.|+|+|+|.|+.+ .++.|+|++|||++
T Consensus 76 G~~~~~~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel 155 (332)
T PF00456_consen 76 GYDLSEEDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGEL 155 (332)
T ss_dssp TSSS-HHHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHH
T ss_pred cCCCCHHHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccc
Confidence 3 4445556777778755555553 455689999999999999999998632 36789999999999
Q ss_pred ccchHHHHHHHHHHCCCC-eEEEEEcCCccccccccccccCcchhhh-cCc-ccEEEE-eCCCHHHHHHHHHHHHHHHhh
Q 016175 205 NQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR-GDY-VPGLKV-DGMDALAVKQACKFAKEHALK 280 (394)
Q Consensus 205 ~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~~~~~~~~-g~~-~~~~~V-DG~D~~av~~a~~~A~~~ar~ 280 (394)
+||++|||+.+|+.++|. +|+|+++|++++..+++.....+ +..+ -++ |.+++| ||||++++.+|+++|... +
T Consensus 156 ~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~~~~-~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~--~ 232 (332)
T PF00456_consen 156 QEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVFSED-IAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS--K 232 (332)
T ss_dssp HSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTHHSH-HHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS--T
T ss_pred cchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCcccccchH-HHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc--C
Confidence 999999999999999999 79999999999877766544332 3332 233 778998 999999999999988642 2
Q ss_pred CCCEEEEEEeeecCCCCCCC--CCCCCC--Cchhhhhhh
Q 016175 281 NGPMILEMDTYRYHGHSMSD--PGSTYR--TRDEISGVR 315 (394)
Q Consensus 281 ~gP~lIe~~t~R~~GHs~~D--~~~~YR--~~~e~~~~~ 315 (394)
++|++|+++|.+++|.+... ...++. +++|+++.+
T Consensus 233 ~kP~~Ii~~TvkG~G~~~~e~~~~~Hg~~l~~ee~~~~k 271 (332)
T PF00456_consen 233 GKPTVIIARTVKGKGVPFMEGTAKWHGSPLTEEEVEQAK 271 (332)
T ss_dssp SS-EEEEEEE-TTTTSTTTTTSGGGTSS--HHHHHHHHH
T ss_pred CCCceeecceEEecCchhhcccchhhccCCcHHHHHHHH
Confidence 78999999999999997653 223332 455566543
No 21
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.96 E-value=3.6e-29 Score=231.30 Aligned_cols=187 Identities=21% Similarity=0.239 Sum_probs=146.2
Q ss_pred CchHHHHHHHHhccCCCCeeecCCcchhhHhhcCCCHHHHHHHHhCC-CCCCCCCCCCc--cCccCCC-CCccCCcCCcc
Q 016175 98 DGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGR-KDGCSHGKGGS--MHFYKKD-SGFYGGHGIVG 173 (394)
Q Consensus 98 ~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~lsrG~~~~~vlael~g~-~~~~~~G~ggs--~H~~~~~-~~~~~~~g~lG 173 (394)
+|...+++.+..+|+. .+..-||+ ++|+|||..+.++ -++|. ++..+.++.++ .|+.... .++..++|++|
T Consensus 4 ~g~~ls~~~i~~~L~~---~~~~~rDr-~ils~gH~~~~~~-~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG 78 (195)
T cd02007 4 LGSNLGVVELTLALHY---VFDSPKDK-IIWDVGHQAYPHK-ILTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHSS 78 (195)
T ss_pred CCcchhHHHHHHHHHH---hcCCCCCe-EEEecccHHHHHH-HHHCCHHHHhhhhcCCCCCCCCcCCCCCCceECCCchh
Confidence 7889999999888873 12245999 9999999987665 34665 33444555444 4443211 24556899999
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhcCc
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY 253 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g~~ 253 (394)
+++|+|+|+|+|.|+++.+++|||++|||+++||.+||++++|+.+++|+|+||+||+|+++++.+. ....+..+|+.
T Consensus 79 ~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~~--~~~~~~a~G~~ 156 (195)
T cd02007 79 TSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVGT--PGNLFEELGFR 156 (195)
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCCC--HHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999877652 11223334443
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCC
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (394)
+.. .|||+|++++.+++++|.+ .++|++|+++|++++|
T Consensus 157 ~~~-~vdG~d~~~l~~a~~~a~~---~~~P~~I~~~T~kg~g 194 (195)
T cd02007 157 YIG-PVDGHNIEALIKVLKEVKD---LKGPVLLHVVTKKGKG 194 (195)
T ss_pred ccc-eECCCCHHHHHHHHHHHHh---CCCCEEEEEEEecccC
Confidence 322 5899999999999887654 2899999999999987
No 22
>PRK12753 transketolase; Reviewed
Probab=99.96 E-value=6.9e-29 Score=266.24 Aligned_cols=217 Identities=19% Similarity=0.161 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCee------ecCCcchhhHhhcCCCH---HHHHHH-
Q 016175 71 MATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSI------ITAYRDHCTFLGRGGTL---LEVFSE- 140 (394)
Q Consensus 71 m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~------~~~yRd~~~~lsrG~~~---~~vlae- 140 (394)
...+|.+...+... . +.+| .|...+++.+..+|+..-+. -+..||+ ++|++||.. |.+++.
T Consensus 8 a~~iR~~~~~~~~~--a----~~GH--~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDr-fvls~GH~~~~lYa~l~~~ 78 (663)
T PRK12753 8 ANAIRALSMDAVQK--A----NSGH--PGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDR-FILSNGHASMLLYSLLHLT 78 (663)
T ss_pred HHHHHHHHHHHHHh--c----CCCC--chhhHHHHHHHHHHHHHHhCCCccCCCCCCCCc-EEEecccHHHHHHHHHHHh
Confidence 44567666554432 2 3467 78888888888887632111 1257999 999999984 777664
Q ss_pred -H-hCCCCCCCCCCCCccCccCCC----CCccCCcCCccchhhHHHHHHHHhhhCCC----------CCeEEEEEccccc
Q 016175 141 -L-MGRKDGCSHGKGGSMHFYKKD----SGFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAA 204 (394)
Q Consensus 141 -l-~g~~~~~~~G~ggs~H~~~~~----~~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~l~GDGa~ 204 (394)
+ +..+...+.++.||.-.++|+ .++..++|++|+|++.|+|+|+|.|+.+. +++|+|++|||++
T Consensus 79 G~~~~~e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel 158 (663)
T PRK12753 79 GYDLPIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCL 158 (663)
T ss_pred CCCCCHHHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCcc
Confidence 2 233455666666664333333 35677999999999999999999998752 6899999999999
Q ss_pred ccchHHHHHHHHHHCCCC-eEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEE-EeCCCHHHHHHHHHHHHHHHhh
Q 016175 205 NQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLK-VDGMDALAVKQACKFAKEHALK 280 (394)
Q Consensus 205 ~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~-VDG~D~~av~~a~~~A~~~ar~ 280 (394)
+||++|||+|+|+.|+|| +|+||+||+++++++.+.... .++..+. +| |+++. |||||+.++++|+++|... .
T Consensus 159 ~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~~-~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~--~ 235 (663)
T PRK12753 159 MEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFT-DDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSV--K 235 (663)
T ss_pred ccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhcC-hhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHC--C
Confidence 999999999999999998 789999999999998876553 3455544 45 88895 9999999999999988752 3
Q ss_pred CCCEEEEEEeeecCCCCCC
Q 016175 281 NGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 281 ~gP~lIe~~t~R~~GHs~~ 299 (394)
++|++|+++|++++|++..
T Consensus 236 ~~P~~I~~~T~kG~G~~~~ 254 (663)
T PRK12753 236 DKPSLIICRTIIGFGSPNK 254 (663)
T ss_pred CCeEEEEEEEeecCCCCcc
Confidence 7899999999999999964
No 23
>PTZ00089 transketolase; Provisional
Probab=99.96 E-value=2.4e-28 Score=262.34 Aligned_cols=232 Identities=20% Similarity=0.193 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeee------cCCcchhhHhhcCCCH---HHHHHHH
Q 016175 71 MATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII------TAYRDHCTFLGRGGTL---LEVFSEL 141 (394)
Q Consensus 71 m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~------~~yRd~~~~lsrG~~~---~~vlael 141 (394)
...+|.+...+... . +..| .|...+++.+..+|+..-+-+ +..||+ +++++||.. |.++..
T Consensus 10 a~~iR~~~~~~~~~--a----~~GH--~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr-~vls~GH~~~~lYa~l~l- 79 (661)
T PTZ00089 10 ANEIRCLSADLVQK--A----NSGH--PGAPMGMAPIAHILWSEVMKYNPKDPRWINRDR-FVLSNGHASALLYSMLHL- 79 (661)
T ss_pred HHHHHHHHHHHHHh--c----CCCC--cchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCE-EEEeCcchHHHHHHHHHH-
Confidence 44567766544422 2 3467 788888888888887431111 137999 999999985 766654
Q ss_pred hCC----CCCCCCCCCCccCccCCCC----CccCCcCCccchhhHHHHHHHHhhhCCC----------CCeEEEEEcccc
Q 016175 142 MGR----KDGCSHGKGGSMHFYKKDS----GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGA 203 (394)
Q Consensus 142 ~g~----~~~~~~G~ggs~H~~~~~~----~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~l~GDGa 203 (394)
.|. ++..++++.+|.-.++|+. ++..++|++|++++.|+|+|+|.|+.+. +++|||++|||+
T Consensus 80 ~G~~~~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~ 159 (661)
T PTZ00089 80 TGYDLSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGC 159 (661)
T ss_pred cCCCCCHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccc
Confidence 554 3445566655533334433 4556899999999999999999998653 789999999999
Q ss_pred cccchHHHHHHHHHHCCCC-eEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEE-eCC-CHHHHHHHHHHHHHHH
Q 016175 204 ANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKV-DGM-DALAVKQACKFAKEHA 278 (394)
Q Consensus 204 ~~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~V-DG~-D~~av~~a~~~A~~~a 278 (394)
+++|++|||+|+|+.|+|| +|+||+||+++|+++.+.... .++..+. ++ |+++.| ||| |+.++++|+++|++.
T Consensus 160 l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~~-~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~- 237 (661)
T PTZ00089 160 LQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSFT-EDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS- 237 (661)
T ss_pred hhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCcccccC-ccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc-
Confidence 9999999999999999998 789999999999988876543 3454443 44 888999 999 999999999988753
Q ss_pred hhCCCEEEEEEeeecCCCCCCCCCC---CCCCchhhhhhh
Q 016175 279 LKNGPMILEMDTYRYHGHSMSDPGS---TYRTRDEISGVR 315 (394)
Q Consensus 279 r~~gP~lIe~~t~R~~GHs~~D~~~---~YR~~~e~~~~~ 315 (394)
.++|++|+++|+|++||.+.++.. .+.+++|+++++
T Consensus 238 -~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~ 276 (661)
T PTZ00089 238 -KGKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVK 276 (661)
T ss_pred -CCCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHH
Confidence 268999999999999987665432 256777877765
No 24
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.95 E-value=9.2e-28 Score=230.46 Aligned_cols=202 Identities=23% Similarity=0.268 Sum_probs=156.2
Q ss_pred ccccCCchHHHHHHHHhccCCC----Cee--ecCCcchhhHhhcCCCH---HHHHHHHhCC---CCCCCCCCCCc---cC
Q 016175 93 FCHLYDGQEAVAIGMEAGITKK----DSI--ITAYRDHCTFLGRGGTL---LEVFSELMGR---KDGCSHGKGGS---MH 157 (394)
Q Consensus 93 f~h~~~GqEa~~vg~~~aL~~~----D~~--~~~yRd~~~~lsrG~~~---~~vlael~g~---~~~~~~G~ggs---~H 157 (394)
..| .|...+++.+..+|+.. |.- ....||+ +++++||.. |.++. +.|. +...+.+..|+ .|
T Consensus 16 ~gh--~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~-~v~s~gH~~~~~ya~l~-~~g~~~~~~l~~~~~~gs~l~gh 91 (255)
T cd02012 16 SGH--PGGSLSAADILAVLYFKVLKYDPADPKWPNRDR-FVLSKGHASPALYAVLA-LAGYLPEEDLKTFRQLGSRLPGH 91 (255)
T ss_pred CCC--cCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCe-EEEcCCcHHHHHHHHHH-HcCCCCHHHHHHhcccCCCCCCC
Confidence 456 78888888888777632 111 1245888 999999984 44444 3332 33333444444 44
Q ss_pred ccCCC-CCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCC-eEEEEEcCCcccc
Q 016175 158 FYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (394)
Q Consensus 158 ~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~ 235 (394)
+.... .++..++|+||+++|.|+|+|+|.++.++++.|+|++|||++++|.+||++++|+.++|| +|+|++||+|+++
T Consensus 92 ~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~ 171 (255)
T cd02012 92 PEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQID 171 (255)
T ss_pred CCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCcccc
Confidence 43211 256668899999999999999999999999999999999999999999999999999998 7899999999987
Q ss_pred ccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCCCCCCC
Q 016175 236 TAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D 300 (394)
.+........++.++. ++ ++++.|||||+.++.+++++|.+. .++|++|+++|.|++||+...
T Consensus 172 ~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~--~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 172 GPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS--KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc--CCCCEEEEEEeecccccCccC
Confidence 7665444455677765 44 889999999999999999988753 278999999999999999654
No 25
>PLN02790 transketolase
Probab=99.95 E-value=9.4e-28 Score=257.46 Aligned_cols=201 Identities=23% Similarity=0.226 Sum_probs=159.7
Q ss_pred cccccCCchHHHHHHHHhccCCCCeeec------CCcchhhHhhcCCCH---HHHHHHHhCC-----CCCCCCCCCCccC
Q 016175 92 GFCHLYDGQEAVAIGMEAGITKKDSIIT------AYRDHCTFLGRGGTL---LEVFSELMGR-----KDGCSHGKGGSMH 157 (394)
Q Consensus 92 gf~h~~~GqEa~~vg~~~aL~~~D~~~~------~yRd~~~~lsrG~~~---~~vlael~g~-----~~~~~~G~ggs~H 157 (394)
+..| .|...+++.+..+|+..-+-+. ..||+ ++|++||.. |.+++. .|. +...+.++.|+..
T Consensus 13 ~~GH--~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDr-fvls~GH~~~~lYa~l~~-~G~~~~~~~~l~~~r~~~s~~ 88 (654)
T PLN02790 13 NSGH--PGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHL-AGYDSVQMEDLKQFRQWGSRT 88 (654)
T ss_pred CCCc--CCchhhHHHHHHHHHHhhcccCCCCCCCCCCCE-EEEeCcchHHHHHHHHHH-cCCCCCCHHHHHHhccCCCCC
Confidence 4567 8888899988888874422222 47999 999999984 776654 444 4455666666533
Q ss_pred ccCCC----CCccCCcCCccchhhHHHHHHHHhhh-----CCC-----CCeEEEEEcccccccchHHHHHHHHHHCCCC-
Q 016175 158 FYKKD----SGFYGGHGIVGAQIPLGCGLAFAQKY-----SKD-----ETVTFALYGDGAANQGQLFEALNIAALWDLP- 222 (394)
Q Consensus 158 ~~~~~----~~~~~~~g~lG~~lp~A~G~A~A~k~-----~~~-----~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~Lp- 222 (394)
.++|+ .++..++|++|+++++|+|+|+|.|+ +++ +++|+|++|||++++|++|||+|+|+.|+||
T Consensus 89 ~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~n 168 (654)
T PLN02790 89 PGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGK 168 (654)
T ss_pred CCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCC
Confidence 33333 36778999999999999999999995 343 6899999999999999999999999999999
Q ss_pred eEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEEeC--CCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCCCCC
Q 016175 223 AILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDG--MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (394)
Q Consensus 223 vI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG--~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (394)
+|+||+||+|+|+++.+..... ++..+. +| |+++.||| ||+.++++|+++|.+. .++|++|+++|+|++|.+.
T Consensus 169 li~i~d~N~~~i~~~~~~~~~~-~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~--~~~P~lI~~~T~kG~G~~~ 245 (654)
T PLN02790 169 LIVLYDDNHISIDGDTEIAFTE-DVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV--TDKPTLIKVTTTIGYGSPN 245 (654)
T ss_pred EEEEEecCCccccCCcccccch-hHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc--CCCeEEEEEEEeecCCCcc
Confidence 7999999999999988765533 444443 45 88999987 8999999999988752 3789999999999999985
Q ss_pred C
Q 016175 299 S 299 (394)
Q Consensus 299 ~ 299 (394)
.
T Consensus 246 ~ 246 (654)
T PLN02790 246 K 246 (654)
T ss_pred c
Confidence 4
No 26
>PRK05899 transketolase; Reviewed
Probab=99.95 E-value=1.6e-27 Score=255.03 Aligned_cols=236 Identities=21% Similarity=0.195 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeee------cCCcchhhHhhcCCCH---HH
Q 016175 66 SFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII------TAYRDHCTFLGRGGTL---LE 136 (394)
Q Consensus 66 ~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~------~~yRd~~~~lsrG~~~---~~ 136 (394)
++-+....+|++...+.... +..| .|...+++.+..+|+.+-+-+ ...||+ +++++||.. |.
T Consensus 7 ~l~~~a~~iR~~~~~~~~~~------~~gH--~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr-~i~s~GH~~~~~Ya 77 (624)
T PRK05899 7 LLQLLANAIRVLSIDAVQKA------NSGH--PGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDR-FVLSAGHGSMLLYS 77 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHc------CCCC--ccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCE-EEEEChhHHHHHHH
Confidence 34455667888776555332 3457 788889998888877431111 246998 999999985 66
Q ss_pred HHHH--H-hCCCCCCCCCCCCc---cCccCC-CCCccCCcCCccchhhHHHHHHHHhhhCCC----------CCeEEEEE
Q 016175 137 VFSE--L-MGRKDGCSHGKGGS---MHFYKK-DSGFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALY 199 (394)
Q Consensus 137 vlae--l-~g~~~~~~~G~ggs---~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~l~ 199 (394)
+++. + +.++...+..+.++ .|+... ..++..++|++|+++|.|+|+|+|.++++. +++|+|++
T Consensus 78 ~l~~~G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~ 157 (624)
T PRK05899 78 LLHLAGYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLC 157 (624)
T ss_pred HHHHcCCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEE
Confidence 6654 2 33333344444443 343321 135666899999999999999999998776 78999999
Q ss_pred cccccccchHHHHHHHHHHCCCC-eEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHH
Q 016175 200 GDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKE 276 (394)
Q Consensus 200 GDGa~~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~ 276 (394)
|||++++|.+||+|++|+.++|| +|+|++||+|+++.+.... ..+++..++ ++ +++++|||||+.++..|+++|.+
T Consensus 158 GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~ 236 (624)
T PRK05899 158 GDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKA 236 (624)
T ss_pred CcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999 7899999999998776533 245677766 45 88999999999999999988775
Q ss_pred HHhhCCCEEEEEEeeecCCCCCCCCCCCCCC----chhhhhh
Q 016175 277 HALKNGPMILEMDTYRYHGHSMSDPGSTYRT----RDEISGV 314 (394)
Q Consensus 277 ~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~----~~e~~~~ 314 (394)
. ++|++|++.|+|++||+..++...|+. +++++.+
T Consensus 237 ~---~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~ 275 (624)
T PRK05899 237 S---TKPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAA 275 (624)
T ss_pred c---CCCEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHH
Confidence 3 799999999999999997765434653 4555544
No 27
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.95 E-value=1.2e-26 Score=247.72 Aligned_cols=319 Identities=20% Similarity=0.247 Sum_probs=260.0
Q ss_pred CCCceeeeCC---C----CccceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccccCCchHHHH
Q 016175 33 DTTPLTIETS---V----PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVA 104 (394)
Q Consensus 33 ~~~~~~~~~~---~----~~~~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~-g~i~gf~h~~~GqEa~~ 104 (394)
.|.++-+|.. . .|.+.++|. ..+.+|.|+.+.+++.+...-.||..+...|.. |++ . -.|.|+..
T Consensus 141 Ycgsig~E~~hi~~~~~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRF---s--lEG~esli 213 (906)
T COG0567 141 YCGSIGVEYMHISDPEEKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRF---S--LEGGESLI 213 (906)
T ss_pred hccceeeeeeccCCHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccc---c--ccchhhHH
Confidence 4666666621 1 488888987 678999999999999999999999988777654 332 2 37999988
Q ss_pred HHHHhccC------CCCeeec-CCcchhhHhhc--CCCHHHHHHHHhCCCCCCCCCCCCc-cCcc-CCC----CC-----
Q 016175 105 IGMEAGIT------KKDSIIT-AYRDHCTFLGR--GGTLLEVFSELMGRKDGCSHGKGGS-MHFY-KKD----SG----- 164 (394)
Q Consensus 105 vg~~~aL~------~~D~~~~-~yRd~~~~lsr--G~~~~~vlael~g~~~~~~~G~ggs-~H~~-~~~----~~----- 164 (394)
..+...++ -.+++++ .||++..+|.. |.++..+|+|+.|....... .|+. +|++ ..+ .+
T Consensus 214 p~l~~~i~~~~~~G~~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~-sGDVKYH~G~~~~~~~~~~~v~l~ 292 (906)
T COG0567 214 PMLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDL-SGDVKYHLGFSSDRQTDGGKVHLS 292 (906)
T ss_pred HHHHHHHHHHHhcCcceEEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCc-ccccccccccccccccCCCeeEEE
Confidence 77776665 3577776 89999999987 99999999999986432111 3343 6664 111 11
Q ss_pred ccCCcCCccchhhHHHHHHHHhhhCCC-----CCeEEEEEcccc-cccchHHHHHHHHHHCCCC---eEEEEEcCCcccc
Q 016175 165 FYGGHGIVGAQIPLGCGLAFAQKYSKD-----ETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMG 235 (394)
Q Consensus 165 ~~~~~g~lG~~lp~A~G~A~A~k~~~~-----~~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~Lp---vI~vv~NN~~~i~ 235 (394)
+..+.++|....|+..|.+.|.+.... ..+.+.++||.+ .+||.+.|+||+....+.- .|++|.||+.|++
T Consensus 293 La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFT 372 (906)
T COG0567 293 LAFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFT 372 (906)
T ss_pred ecCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCC
Confidence 235789999999999999999875432 246789999999 8999999999999988876 5999999999999
Q ss_pred ccccccccCcchhhh-c--CcccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCCCchhh
Q 016175 236 TAEWRAAKSPSYYKR-G--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 311 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~-g--~~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~ 311 (394)
|+.....+.+ |++. + ...|+++|||.|++||..+.+.|++++.. +++++|++.|||.+||+++|.++ +..+..+
T Consensus 373 Tsp~~sRSt~-Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY 450 (906)
T COG0567 373 TSPADARSTP-YCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMY 450 (906)
T ss_pred CCcccccCCC-CCCChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHH
Confidence 8854443333 5443 3 23899999999999999999999999888 99999999999999999999987 9999999
Q ss_pred hhhhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 016175 312 SGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESP 361 (394)
Q Consensus 312 ~~~~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~ 361 (394)
+.++....+...|.+.|+++|++++++.+.+.++++..++......+...
T Consensus 451 ~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~ 500 (906)
T COG0567 451 QKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYK 500 (906)
T ss_pred HHHhcCCChhhhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHHH
Confidence 99998889999999999999999999999999999999999887776554
No 28
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.95 E-value=2e-27 Score=253.38 Aligned_cols=229 Identities=21% Similarity=0.224 Sum_probs=175.2
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhhHh
Q 016175 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFL 128 (394)
Q Consensus 49 ~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~l 128 (394)
+++.|.....++.++|.++ ...+|++-..+.. . +..| .|...++|.+..+|+. ++...||+ +++
T Consensus 3 ~i~~p~dl~~l~~~~l~~l---a~~iR~~~i~~~~--~-----~~GH--~g~~ls~vel~~aL~~---~~~~~rDr-~i~ 66 (617)
T TIGR00204 3 LINSPQELRLLSIDELEKL---CDELRRYLLESVS--A-----SGGH--LASGLGTVELTVALHY---VFNTPKDQ-FIW 66 (617)
T ss_pred CCCCHHHHhhCCHHHHHHH---HHHHHHHHHHHHh--c-----cCCC--cCcchhHHHHHHHHHh---hCCCCCCc-EEE
Confidence 4556777778888776655 5578887766543 1 3367 8999999999988873 44568999 999
Q ss_pred hcCCCHHHHHHHHhCCC-CCCCCCCCCc--cCccCCCCCcc-CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccccc
Q 016175 129 GRGGTLLEVFSELMGRK-DGCSHGKGGS--MHFYKKDSGFY-GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA 204 (394)
Q Consensus 129 srG~~~~~vlael~g~~-~~~~~G~ggs--~H~~~~~~~~~-~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~ 204 (394)
++||..|..+. +.|+. ...+.++.|+ .|+...+.++. .++|++|+++++|+|+|+|.|+++.+.+++|++|||++
T Consensus 67 s~GH~~Y~~~~-~~G~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~ 145 (617)
T TIGR00204 67 DVGHQAYPHKL-LTGRREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAI 145 (617)
T ss_pred ecchHHHHHHH-HhCcHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCccc
Confidence 99999877755 34543 3345555444 45543333333 47999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHCCCCeEEEEEcCCcccccccccccc------------------------C----------------
Q 016175 205 NQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK------------------------S---------------- 244 (394)
Q Consensus 205 ~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~------------------------~---------------- 244 (394)
++|++|||+|+|+.|+||+|+||+||+++++++...... .
T Consensus 146 ~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 225 (617)
T TIGR00204 146 TAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMK 225 (617)
T ss_pred ccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhh
Confidence 999999999999999999999999999999877642210 0
Q ss_pred ------cchhhhcCcccEE-EEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCCCCCC
Q 016175 245 ------PSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 245 ------~~~~~~g~~~~~~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (394)
..|.++|| ..+ .|||||+.++.++++.+... ++|++|+++|.|++|.+..
T Consensus 226 ~~~~~~~~f~~~G~--~~~~~vDGhd~~~l~~al~~ak~~---~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 226 GLVVPGTFFEELGF--NYIGPVDGHDLLELIETLKNAKKL---KGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred hccCccchHHHcCC--cEEcccCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCchh
Confidence 01344453 445 79999999999999865532 7899999999999997765
No 29
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.95 E-value=3.5e-27 Score=250.52 Aligned_cols=233 Identities=20% Similarity=0.191 Sum_probs=178.1
Q ss_pred ceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhh
Q 016175 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCT 126 (394)
Q Consensus 47 ~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~ 126 (394)
...+..|....+++.++|.++ ...+|.+-..+... +..| .|...+++.+..+|+. .+...||+ +
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~~---a~~iR~~~~~~~~~-------~~gH--~g~~ls~~~i~~~L~~---~~~~~rDr-~ 70 (580)
T PRK05444 7 LDTINSPADLKKLSEEELPQL---ADEIREFLIDVVSK-------TGGH--LGSNLGVVELTVALHY---VFDTPKDR-I 70 (580)
T ss_pred hhccCCHHHHhcCCHHHHHHH---HHHHHHHHHHHHHh-------cCCC--cCCCccHHHHHHHHHH---hcCCCCcc-E
Confidence 344556766777787776554 56788877666642 2357 7888899988888862 23357999 9
Q ss_pred HhhcCCCHHHHHHHHhCC-CCCCCCCCCCc--cCccCCC-CCccCCcCCccchhhHHHHHHHHhhhC-CCCCeEEEEEcc
Q 016175 127 FLGRGGTLLEVFSELMGR-KDGCSHGKGGS--MHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYS-KDETVTFALYGD 201 (394)
Q Consensus 127 ~lsrG~~~~~vlael~g~-~~~~~~G~ggs--~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~-~~~~~vv~l~GD 201 (394)
+|++||..|..++ ++|+ +...+.++.|+ +|+...+ .++..++|++|+++|+|+|+|+|.|++ ++++.|||++||
T Consensus 71 ils~GH~~y~~~~-~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GD 149 (580)
T PRK05444 71 IWDVGHQAYPHKI-LTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGD 149 (580)
T ss_pred EEeccHHHHHHHH-HhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcc
Confidence 9999999876554 4555 34456666665 4654322 356678999999999999999999988 578899999999
Q ss_pred cccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccc---cCcchhhhc-Cc-ccEE-EEeCCCHHHHHHHHHHHH
Q 016175 202 GAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA---KSPSYYKRG-DY-VPGL-KVDGMDALAVKQACKFAK 275 (394)
Q Consensus 202 Ga~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~---~~~~~~~~g-~~-~~~~-~VDG~D~~av~~a~~~A~ 275 (394)
|+++||.+||++++|+.+++|+|+|++||+|+++++..... ...++..+. ++ |+++ .|||+|+.++.+++++|.
T Consensus 150 G~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~ 229 (580)
T PRK05444 150 GALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK 229 (580)
T ss_pred cccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887764331 111222332 33 7778 589999999999888766
Q ss_pred HHHhhCCCEEEEEEeeecCCCCCC
Q 016175 276 EHALKNGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 276 ~~ar~~gP~lIe~~t~R~~GHs~~ 299 (394)
+. ++|++|++.|+|++|.+..
T Consensus 230 ~~---~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 230 DL---KGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred hC---CCCEEEEEEecCCcCCChh
Confidence 43 8999999999999998865
No 30
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.95 E-value=7.4e-27 Score=233.04 Aligned_cols=239 Identities=17% Similarity=0.021 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeee---cCCcchhhHhhcCCC---HHHHHHH--Hh
Q 016175 71 MATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII---TAYRDHCTFLGRGGT---LLEVFSE--LM 142 (394)
Q Consensus 71 m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~---~~yRd~~~~lsrG~~---~~~vlae--l~ 142 (394)
...+|.....+....+.+.+.-..| .|...+++.+..+|+..-+-+ ..-||+ +|++||. +|.+++. ++
T Consensus 8 ~~~iR~~i~~mv~~a~s~~~~~gGH--~G~slS~adI~~aLy~~~l~~~p~~~~RDR--vlSkGHas~~lYA~L~l~G~~ 83 (386)
T cd02017 8 RSLIRWNAMAMVHRANKKDLGIGGH--IATFASAATLYEVGFNHFFRARGEGGGGDL--VYFQGHASPGIYARAFLEGRL 83 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCC--CCcchhHHHHHHHHHHHhcCCCCCCCCCCE--EEeCCcccHHHHHHHHHcCCC
Confidence 4566766665554333211111256 788888988888886321111 245898 7789998 4777765 34
Q ss_pred CCCCCCCCCCCCc--cCccCCC----C-CccCCcCCccchhhHHHHHHHHhhh-------CCCCCeEEEEEcccccccch
Q 016175 143 GRKDGCSHGKGGS--MHFYKKD----S-GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQ 208 (394)
Q Consensus 143 g~~~~~~~G~ggs--~H~~~~~----~-~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~l~GDGa~~eG~ 208 (394)
..+...++++.|| .|..+|. . ++..++|++|+++++|+|+|+|.|+ .+.++.|+|++|||+++||+
T Consensus 84 ~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~ 163 (386)
T cd02017 84 TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPE 163 (386)
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHH
Confidence 4455556666666 4665442 2 3677899999999999999999998 55788999999999999999
Q ss_pred HHHHHHHHHHCCCC-eEEEEEcCCccccccccccc-cCcchhhh-cCc-ccEEEEe------------------------
Q 016175 209 LFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA-KSPSYYKR-GDY-VPGLKVD------------------------ 260 (394)
Q Consensus 209 ~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~-~~~~~~~~-g~~-~~~~~VD------------------------ 260 (394)
+|||+++|+.++|. +|+|+++|++++..+++... ...++.++ .++ |.+++||
T Consensus 164 vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~ 243 (386)
T cd02017 164 SLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEET 243 (386)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhc
Confidence 99999999999997 79999999999887776631 22234443 344 7788998
Q ss_pred ---------------------------------------------CCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCC
Q 016175 261 ---------------------------------------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (394)
Q Consensus 261 ---------------------------------------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (394)
|||+.+|.+|+.+|... +++|++|.+.|.+++|
T Consensus 244 ~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~--~~kPt~Iia~TikG~G 321 (386)
T cd02017 244 VDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH--KGKPTVILAKTIKGYG 321 (386)
T ss_pred ccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC--CCCCeEEEEeCeecCC
Confidence 99999999999887742 2789999999999999
Q ss_pred CCC-C--CCCCCC-C--Cchhhhhhh
Q 016175 296 HSM-S--DPGSTY-R--TRDEISGVR 315 (394)
Q Consensus 296 Hs~-~--D~~~~Y-R--~~~e~~~~~ 315 (394)
.+. . ++.+++ . +++|+++.+
T Consensus 322 ~~~~~e~~~~~h~~~~~~~~e~~~~~ 347 (386)
T cd02017 322 LGAAGEGRNHAHQVKKMTEDELKALR 347 (386)
T ss_pred CChhccCCcchhcCCCCCHHHHHHHH
Confidence 983 3 333333 2 445555443
No 31
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.93 E-value=9.2e-25 Score=220.77 Aligned_cols=302 Identities=19% Similarity=0.220 Sum_probs=230.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccccCCchHHHHHHHHhcc------CCCCeeec-CCcchhhHh
Q 016175 57 VETTPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGI------TKKDSIIT-AYRDHCTFL 128 (394)
Q Consensus 57 ~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~-g~i~gf~h~~~GqEa~~vg~~~aL------~~~D~~~~-~yRd~~~~l 128 (394)
..+.+++..++-+.|+.+..||..+...+.. ++.. ..|.|....=.-..| .-+|+++. .||++...|
T Consensus 152 e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG-----gEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLl 226 (913)
T KOG0451|consen 152 EQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG-----GEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLL 226 (913)
T ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc-----cccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHH
Confidence 4788999999999999999999998877654 2221 245554332111112 23577776 899997665
Q ss_pred h--cCCCHHHHHHHHhCCCCCC-CCCC-CCc-cCcc--------CCCC--CccCCcCCccchhhHHHHHHHHhhhCC---
Q 016175 129 G--RGGTLLEVFSELMGRKDGC-SHGK-GGS-MHFY--------KKDS--GFYGGHGIVGAQIPLGCGLAFAQKYSK--- 190 (394)
Q Consensus 129 s--rG~~~~~vlael~g~~~~~-~~G~-ggs-~H~~--------~~~~--~~~~~~g~lG~~lp~A~G~A~A~k~~~--- 190 (394)
. ...++..+|..+-|..+-. +... |+. .|+. .... .+.++.++|.+..|+|+|.+.+.+...
T Consensus 227 t~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~G 306 (913)
T KOG0451|consen 227 TALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEG 306 (913)
T ss_pred HHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCC
Confidence 4 3678888888887765421 1111 111 2321 1111 145688999999999999999876432
Q ss_pred -----------CCCeEEEEEcccc-cccchHHHHHHHHHHCCCC---eEEEEEcCCccccccccccccCcchhh-hc-Cc
Q 016175 191 -----------DETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPSYYK-RG-DY 253 (394)
Q Consensus 191 -----------~~~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~Lp---vI~vv~NN~~~i~~~~~~~~~~~~~~~-~g-~~ 253 (394)
+.-+.+.++|||+ ++||.+||++|++-....- .|++|.||+.|++++.++..+.. |++ .+ ..
T Consensus 307 dyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~-ycsDiaK~~ 385 (913)
T KOG0451|consen 307 DYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSA-YCSDIAKSI 385 (913)
T ss_pred CCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccch-hhhHHHHHh
Confidence 1226788899999 8999999999999765554 49999999999999988766543 433 34 33
Q ss_pred -ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCCCchhhhhhhhcCCHHHHHHHHHHHc
Q 016175 254 -VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH 331 (394)
Q Consensus 254 -~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~ 331 (394)
.|+++|||.|+++|.+|.+-|.++-|+ ++.++|++.|||..||++-|+++ |.+|-+++++++...--..|.++|+++
T Consensus 386 ~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~-ftspvmyk~v~aReSvPdlya~~L~~e 464 (913)
T KOG0451|consen 386 QAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPT-FTSPVMYKEVEARESVPDLYAQQLAKE 464 (913)
T ss_pred CCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcc-ccChhHHHHHHhhhcccHHHHHHHHhc
Confidence 889999999999999999999999999 99999999999999999999987 999999999974333446789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 016175 332 DLATEKELKDIEKEVRKEVDDAIAKAKESPMPEP 365 (394)
Q Consensus 332 g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~ 365 (394)
|++|+++++++..+..+.+.+.++.+....+|+.
T Consensus 465 g~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~ 498 (913)
T KOG0451|consen 465 GVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPS 498 (913)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCccCCCch
Confidence 9999999999999999999999999877765553
No 32
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.92 E-value=2.3e-24 Score=228.73 Aligned_cols=232 Identities=19% Similarity=0.205 Sum_probs=166.4
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhhHh
Q 016175 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFL 128 (394)
Q Consensus 49 ~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~~l 128 (394)
.++.|.....++.++|.++ ...+|+....+.. +. .+| .|+..++|.+..+|+. ++..-||+ +++
T Consensus 69 ~i~~p~~~k~l~~~~L~~l---a~eiR~~ii~~~~--~~-----~GH--lgssLs~vEl~~aL~~---vf~~p~Dr-iI~ 132 (641)
T PLN02234 69 TINHPMHMKNLSIKELKVL---SDELRSDVIFNVS--KT-----GGH--LGSNLGVVELTVALHY---IFNTPHDK-ILW 132 (641)
T ss_pred hcCCHHHHhhCCHHHHHHH---HHHHHHHHHHHHh--hc-----CCC--ccccchHHHHHHHHHH---hcCCCCCe-EEE
Confidence 3444544455666666544 5578877665543 21 356 8999999999999973 23345898 999
Q ss_pred hcCCCHHHHHHHHhCCC-CCCCCCCCCc--cCccCCC-CCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccccc
Q 016175 129 GRGGTLLEVFSELMGRK-DGCSHGKGGS--MHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA 204 (394)
Q Consensus 129 srG~~~~~vlael~g~~-~~~~~G~ggs--~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~ 204 (394)
++||..|.... ++|+. ...+.++.|+ .|+...+ .+...++|++|+++++|+|+|+|.++++.++.|||++|||++
T Consensus 133 s~GHqaya~~~-ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel 211 (641)
T PLN02234 133 DVGHQSYPHKI-LTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAM 211 (641)
T ss_pred ecchhHHHHHH-HHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchh
Confidence 99998766544 34442 2445454444 3432211 245568999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHCCCCeEEEEEcCCcc------ccccccc---c----------------ccCcchhhhcCcccEE-E
Q 016175 205 NQGQLFEALNIAALWDLPAILVCENNHYG------MGTAEWR---A----------------AKSPSYYKRGDYVPGL-K 258 (394)
Q Consensus 205 ~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~------i~~~~~~---~----------------~~~~~~~~~g~~~~~~-~ 258 (394)
++|++|||+|.|+..+-++|+|+++|+.. ...+.+. . .....|.++| |.++ .
T Consensus 212 ~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG--~~~~g~ 289 (641)
T PLN02234 212 TAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELG--FHYVGP 289 (641)
T ss_pred hhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcC--CEEEee
Confidence 99999999999997776689999999873 2222111 0 0112344455 4457 7
Q ss_pred EeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCC
Q 016175 259 VDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDP 301 (394)
Q Consensus 259 VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~ 301 (394)
|||||++++.++++++... . ++|++|+++|.+++|.+....
T Consensus 290 vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 290 VDGHNIDDLVSILETLKST--KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred ECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecCCCcchhhc
Confidence 9999999999999887543 3 589999999999999998744
No 33
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.92 E-value=1.7e-24 Score=231.49 Aligned_cols=232 Identities=21% Similarity=0.249 Sum_probs=171.5
Q ss_pred ceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhh
Q 016175 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCT 126 (394)
Q Consensus 47 ~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~ 126 (394)
+..+..|.....++.++|.++ ...+|+....+.. +. | +| .|+..++|.+..+|+. ++-.-+|+ +
T Consensus 34 l~~i~~p~dlk~l~~~~l~~l---a~~iR~~ii~~~~--~~----~-GH--~g~~Ls~vel~~aL~~---~~~~p~Dr-~ 97 (677)
T PLN02582 34 LDTINYPIHMKNLSVKELKQL---ADELRSDVIFNVS--KT----G-GH--LGSSLGVVELTVALHY---VFNAPQDK-I 97 (677)
T ss_pred hhhCCCHHHHhhCCHHHHHHH---HHHHHHHHHHHHH--hc----C-CC--cCccccHHHHHHHHHH---hhCCCCCe-E
Confidence 556666877778888887765 5578887766553 22 2 57 7888999999988873 23344688 9
Q ss_pred HhhcCCCHHHHHHHHhCCCC-CCCCCCCCc--cCccCCC-CCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccc
Q 016175 127 FLGRGGTLLEVFSELMGRKD-GCSHGKGGS--MHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (394)
Q Consensus 127 ~lsrG~~~~~vlael~g~~~-~~~~G~ggs--~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDG 202 (394)
++++||..|..+. ++|+.. ..+.++.|+ .|+...+ .+...++|++|+++++|+|+|+|.++++.+++|||++|||
T Consensus 98 i~s~GH~ay~~~~-l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG 176 (677)
T PLN02582 98 LWDVGHQSYPHKI-LTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDG 176 (677)
T ss_pred EEECcchHHHHHH-HHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 9999998766554 455533 445555444 5543211 3455689999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHCCCCeEEEEEcCCc-cc--------ccccccc-------ccC----------------------
Q 016175 203 AANQGQLFEALNIAALWDLPAILVCENNHY-GM--------GTAEWRA-------AKS---------------------- 244 (394)
Q Consensus 203 a~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i--------~~~~~~~-------~~~---------------------- 244 (394)
++++|++|||||+|+.|++|+|+||+||+. ++ +...... ...
T Consensus 177 ~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (677)
T PLN02582 177 AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMH 256 (677)
T ss_pred ccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHH
Confidence 999999999999999999999999999986 33 2111100 000
Q ss_pred -------------------cchhhhcCcccEE-EEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCC
Q 016175 245 -------------------PSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 245 -------------------~~~~~~g~~~~~~-~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (394)
.-|..+| +..+ .|||||+.++.++++.+.+. . ++|++|++.|.||+|...+
T Consensus 257 ~~~~~~~~~~k~~~~~~~~~~fe~~G--~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 257 ELAAKVDEYARGMISGSGSTLFEELG--LYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHHHHHHHhhhccCccccchHHHcC--CeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 0133344 3323 78999999999999988754 2 5999999999999999976
No 34
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.92 E-value=2.6e-24 Score=230.41 Aligned_cols=232 Identities=20% Similarity=0.233 Sum_probs=173.0
Q ss_pred ceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeeecCCcchhh
Q 016175 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCT 126 (394)
Q Consensus 47 ~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~~~yRd~~~ 126 (394)
+.+++.|.....|+.++|.++ ...+|.+...+... . | +| .|...++|.+..+|. .++..-||+ +
T Consensus 9 l~~i~~p~dl~~l~~~~l~~~---a~~iR~~ii~~~~~--~----~-GH--~g~~ls~vel~~aL~---~~~~~prDr-~ 72 (641)
T PRK12571 9 LDRIKGPADLRALSDAELEQL---ADELRAEVISAVSE--T----G-GH--LGSSLGVVELTVALH---AVFNTPKDK-L 72 (641)
T ss_pred hhhcCCHHHHHhCCHHHHHHH---HHHHHHHHHHHHHH--h----C-CC--cCCCchHHHHHHHHH---HhcCCCCCc-E
Confidence 556666877788888776655 56788877655542 1 2 57 788888888888886 223244999 9
Q ss_pred HhhcCCCHHHHHHHHhCCCC-CCCCCCCCc--cCccCCCC-CccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccc
Q 016175 127 FLGRGGTLLEVFSELMGRKD-GCSHGKGGS--MHFYKKDS-GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (394)
Q Consensus 127 ~lsrG~~~~~vlael~g~~~-~~~~G~ggs--~H~~~~~~-~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDG 202 (394)
++++||..|..+ -+.|+.+ ..+.++.|+ .|+...+. +-....|+-+.++++|+|+|+|.++.+.++.|+|++|||
T Consensus 73 i~s~GH~~Y~~~-~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG 151 (641)
T PRK12571 73 VWDVGHQCYPHK-ILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDG 151 (641)
T ss_pred EEECchHHHHHH-HHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCc
Confidence 999999987766 4667643 456666664 45543221 111234444667899999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHCCCCeEEEEEcCCcccccccc-------ccccC-------------------------------
Q 016175 203 AANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW-------RAAKS------------------------------- 244 (394)
Q Consensus 203 a~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~-------~~~~~------------------------------- 244 (394)
++++|.+||++++|+.|++|+|+|++||+++++.+.. .....
T Consensus 152 ~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (641)
T PRK12571 152 SLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRAREL 231 (641)
T ss_pred hhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHh
Confidence 9999999999999999999999999999999987764 11111
Q ss_pred --------cchhhhcCcccEE-EEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCCCCCC
Q 016175 245 --------PSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 245 --------~~~~~~g~~~~~~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (394)
..|.++| |.++ .|||||+.++.+|+++|... .++|++|+++|.+++|.+..
T Consensus 232 ~~~~~~~~~~f~a~G--~~~~~~vdGhd~~~l~~al~~ak~~--~~~P~~I~~~T~kGkG~~~~ 291 (641)
T PRK12571 232 VTGMIGGGTLFEELG--FTYVGPIDGHDMEALLSVLRAARAR--ADGPVLVHVVTEKGRGYAPA 291 (641)
T ss_pred hhhccchhhHHHHcC--CEEECccCCCCHHHHHHHHHHHHhC--CCCCEEEEEEecCccCcchh
Confidence 1233333 6667 68999999999999987752 27899999999999999865
No 35
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.5e-23 Score=217.21 Aligned_cols=230 Identities=21% Similarity=0.230 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccC-------CCCeeecCCcchhhHhhcCCC---HHHHHHH
Q 016175 71 MATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-------KKDSIITAYRDHCTFLGRGGT---LLEVFSE 140 (394)
Q Consensus 71 m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~-------~~D~~~~~yRd~~~~lsrG~~---~~~vlae 140 (394)
.-.||.+-..+.+..+ ..| .|--..++.+...|. |.+. -+..||+ |+||.||. +|.+|.
T Consensus 10 ~naiR~Ls~davqkAn------SGH--PG~pmG~A~ia~~L~~~~l~~nP~nP-~W~nRDR-FVLSaGHgSmllYsllh- 78 (663)
T COG0021 10 ANAIRFLSMDAVQKAN------SGH--PGAPMGAADIAYVLWTRFLKHNPDNP-KWINRDR-FVLSAGHGSMLLYSLLH- 78 (663)
T ss_pred HHHHHHHHHHHHHhcc------CCC--CCCCccHHHHHHHHHHHHhcCCCCCC-CCCCCcc-EEecCCchhHHHHHHHH-
Confidence 3456766554444433 346 455555555555553 2322 1356999 99999997 666654
Q ss_pred HhCC----CCCCCCCCCCccCccCCCC----CccCCcCCccchhhHHHHHHHHhhhCC-----C-----CCeEEEEEccc
Q 016175 141 LMGR----KDGCSHGKGGSMHFYKKDS----GFYGGHGIVGAQIPLGCGLAFAQKYSK-----D-----ETVTFALYGDG 202 (394)
Q Consensus 141 l~g~----~~~~~~G~ggs~H~~~~~~----~~~~~~g~lG~~lp~A~G~A~A~k~~~-----~-----~~~vv~l~GDG 202 (394)
+.|- ++...+...+|--+++|+. ++..++|+||+|++.|||+|+|.++.. + ++.|+|++|||
T Consensus 79 l~Gy~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDG 158 (663)
T COG0021 79 LTGYDLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDG 158 (663)
T ss_pred HccCCCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCc
Confidence 4554 2334566667755556654 466789999999999999999988632 2 45899999999
Q ss_pred ccccchHHHHHHHHHHCCCC-eEEEEEcCCccccccccccccCcchhhhc-Cc-ccEE-EEeCCCHHHHHHHHHHHHHHH
Q 016175 203 AANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGL-KVDGMDALAVKQACKFAKEHA 278 (394)
Q Consensus 203 a~~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~-~VDG~D~~av~~a~~~A~~~a 278 (394)
+++||..|||..+|+.++|. +|++.++|+++|....+..+.+ +..+|- +| |.++ .+||||++++..|+++|+..
T Consensus 159 clmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~e-d~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~- 236 (663)
T COG0021 159 CLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTE-DVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS- 236 (663)
T ss_pred hHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccccch-hHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc-
Confidence 99999999999999999999 7999999999998888777654 455543 55 8888 67999999999999998863
Q ss_pred hhCCCEEEEEEeeecCCCCCCCCCCCC----CCchhhhhh
Q 016175 279 LKNGPMILEMDTYRYHGHSMSDPGSTY----RTRDEISGV 314 (394)
Q Consensus 279 r~~gP~lIe~~t~R~~GHs~~D~~~~Y----R~~~e~~~~ 314 (394)
+++|++|+|+|..++|-+.......+ -..+|++..
T Consensus 237 -~dkPtlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~ 275 (663)
T COG0021 237 -TDKPTLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAA 275 (663)
T ss_pred -CCCCeEEEEEeeeecCCCCcCCCccccCCCCCHHHHHHH
Confidence 37999999999999998873221112 345666654
No 36
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.90 E-value=4.2e-23 Score=221.96 Aligned_cols=218 Identities=18% Similarity=0.022 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHhcccc--ccccccCCchHHHHHHHHhccCCCCeee---cCCcchhhHhhcCCC---HHHHHHH--H
Q 016175 72 ATMRRMEIAADSLYKAKLV--RGFCHLYDGQEAVAIGMEAGITKKDSII---TAYRDHCTFLGRGGT---LLEVFSE--L 141 (394)
Q Consensus 72 ~~~R~~e~~~~~l~~~g~i--~gf~h~~~GqEa~~vg~~~aL~~~D~~~---~~yRd~~~~lsrG~~---~~~vlae--l 141 (394)
..+|..-..+.. +.++. .-..| +|..++++.+..+|+..-+-. +..|| +++++||. +|.++.. +
T Consensus 80 ~~iR~~ai~MV~--~A~~~~~~vgGH--igsslS~adIl~vLy~~~lr~~~~~~~rD--~VlSKGHasp~lYA~L~l~G~ 153 (885)
T TIGR00759 80 SIIRWNAIAMVL--RANKKDLGLGGH--ISTYASAATLYEVGFNHFFRGHSEGGGGD--LVFFQGHAAPGIYARAFLEGR 153 (885)
T ss_pred HHHHHHHHHHHH--HcCCCCCCCCCC--cCCcHHHHHHHHHHHHHhcCCCCCCCCCC--EEEECCcHHHHHHHHHHHcCC
Confidence 456766555443 33321 01457 888889998888877431111 24588 49999998 5555554 2
Q ss_pred hCCCCCCCCCC--CCccCccCCC----C-CccCCcCCccchhhHHHHHHHHhhh-------CCCCCeEEEEEcccccccc
Q 016175 142 MGRKDGCSHGK--GGSMHFYKKD----S-GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQG 207 (394)
Q Consensus 142 ~g~~~~~~~G~--ggs~H~~~~~----~-~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~l~GDGa~~eG 207 (394)
+..+...++++ .++.+.++|. . ++..++|+||+|++.|+|+|++.|+ ++.++.|+|++|||+++||
T Consensus 154 ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG 233 (885)
T TIGR00759 154 LTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEP 233 (885)
T ss_pred CCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccH
Confidence 33333333333 1222222111 1 3566899999999999999999997 6678899999999999999
Q ss_pred hHHHHHHHHHHCCCC-eEEEEEcCCcccccccccccc-Ccchhhh--cCcccEEEE------------------------
Q 016175 208 QLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK-SPSYYKR--GDYVPGLKV------------------------ 259 (394)
Q Consensus 208 ~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~-~~~~~~~--g~~~~~~~V------------------------ 259 (394)
++|||+.+|+.++|+ +|+||++|.+.+..++..... ..++.++ ++.|.+++|
T Consensus 234 ~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~ 313 (885)
T TIGR00759 234 ESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNE 313 (885)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHh
Confidence 999999999999998 799999999998777664322 1233332 233677888
Q ss_pred ---------------------------------------------eCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecC
Q 016175 260 ---------------------------------------------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (394)
Q Consensus 260 ---------------------------------------------DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (394)
||||+.+|++|++.|.+. +++|++|.++|.+++
T Consensus 314 ~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~--~grPTvIlA~TvKG~ 391 (885)
T TIGR00759 314 TVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH--KGQPTVILAKTIKGY 391 (885)
T ss_pred cccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC--CCCCEEEEEeeeecC
Confidence 699999999999888754 267999999999999
Q ss_pred CCC
Q 016175 295 GHS 297 (394)
Q Consensus 295 GHs 297 (394)
|.+
T Consensus 392 G~~ 394 (885)
T TIGR00759 392 GMG 394 (885)
T ss_pred CCC
Confidence 988
No 37
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.89 E-value=1.4e-22 Score=220.01 Aligned_cols=221 Identities=15% Similarity=0.032 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHhc--cccccccccCCchHHHHHHHHhccCCCCeee---cCCcchhhHhhcCCC---HHHHHHH--
Q 016175 71 MATMRRMEIAADSLYKA--KLVRGFCHLYDGQEAVAIGMEAGITKKDSII---TAYRDHCTFLGRGGT---LLEVFSE-- 140 (394)
Q Consensus 71 m~~~R~~e~~~~~l~~~--g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~---~~yRd~~~~lsrG~~---~~~vlae-- 140 (394)
...+|..-..+....+. +++ ..| +|..++++.+..+|+..-+-. +..|| +++++||. +|.++..
T Consensus 79 a~~iR~~a~~mv~~A~~~~~~~--gGH--~gs~lS~a~i~~vLy~~~lr~~~~~~~rD--~VlskGHasp~lYA~l~l~G 152 (889)
T TIGR03186 79 AAILRWNALAMVVRANRAYGEL--GGH--IASYASAADLFEVGFNHFFRAAGDASGGD--LVYFQPHSAPGVYARAFLEG 152 (889)
T ss_pred HHHHHHHHHHHHHhcccCCCCC--CCC--CcCcHHHHHHHHHHHHHhCCCCCCCCCCC--EEEECCchHHHHHHHHHHcC
Confidence 44566665555433221 112 357 888899998888887432211 23366 69999997 5655554
Q ss_pred HhCCCCCCCCCCC--CccCcc--CCCC---CccCCcCCccchhhHHHHHHHHhhhCC-------CCCeEEEEEccccccc
Q 016175 141 LMGRKDGCSHGKG--GSMHFY--KKDS---GFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAANQ 206 (394)
Q Consensus 141 l~g~~~~~~~G~g--gs~H~~--~~~~---~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~l~GDGa~~e 206 (394)
++..+...++++. ++.+.. +|+. .+..++|+||+|++.|+|+|++.||.. .++.|+|++|||+++|
T Consensus 153 ~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~E 232 (889)
T TIGR03186 153 FLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDE 232 (889)
T ss_pred CCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhcc
Confidence 2333443333332 222222 2222 355689999999999999999988533 3688999999999999
Q ss_pred chHHHHHHHHHHCCCC-eEEEEEcCCcccccccccccc-Ccchhhh-cCc-ccEEEE-----------------------
Q 016175 207 GQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK-SPSYYKR-GDY-VPGLKV----------------------- 259 (394)
Q Consensus 207 G~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~-~~~~~~~-g~~-~~~~~V----------------------- 259 (394)
|++|||+.+|+.++|+ +|+|+++|.+++..++..... ..++.++ -++ |.+++|
T Consensus 233 G~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~ 312 (889)
T TIGR03186 233 PESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFA 312 (889)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHH
Confidence 9999999999999998 799999999998777664222 1234332 223 777888
Q ss_pred ----------------------------------------------eCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeec
Q 016175 260 ----------------------------------------------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (394)
Q Consensus 260 ----------------------------------------------DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (394)
||||+.+|++|++.|++. +++|++|.++|.++
T Consensus 313 ~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~--~~~PTvIla~TvkG 390 (889)
T TIGR03186 313 HTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH--EGRPTVILAKTMKG 390 (889)
T ss_pred hcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeec
Confidence 699999999999988863 26899999999999
Q ss_pred CCCCCC
Q 016175 294 HGHSMS 299 (394)
Q Consensus 294 ~GHs~~ 299 (394)
+|.+..
T Consensus 391 ~G~~~~ 396 (889)
T TIGR03186 391 FGMGAI 396 (889)
T ss_pred CCCCcc
Confidence 997553
No 38
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2.9e-22 Score=205.59 Aligned_cols=222 Identities=20% Similarity=0.192 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeee------cCCcchhhHhhcCCC---HHHH
Q 016175 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII------TAYRDHCTFLGRGGT---LLEV 137 (394)
Q Consensus 67 l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~------~~yRd~~~~lsrG~~---~~~v 137 (394)
+-..|..+|..+..+..--+.|. .+.+.| .+.+...|..+-+-+ +..||+ ++|++||. +|.+
T Consensus 10 ~~~~~n~lri~si~~~~~a~sgh----p~s~~s----~A~~~~vlf~~~mr~~~~~p~~~n~Dr-fvls~GHa~~llYa~ 80 (632)
T KOG0523|consen 10 LKDAVNNLRILSIDATSAAKSGH----PGSPLS----LAPIMHVLFFEVMRYNPADPYWFNRDR-FVLSNGHACPLLYAH 80 (632)
T ss_pred hHHHhhhhhhhhHHHHHhhhcCC----CCCccc----cchhhhhhhhhheecccCCcCCCCCce-EEEeccccchHHHHH
Confidence 34457788888876655544432 222233 333334443322211 245899 99999998 4766
Q ss_pred HHHH--hCCCCCCCCCCCCccCccCCCC---CccCCcCCccchhhHHHHHHHHhhhCCC-CCeEEEEEcccccccchHHH
Q 016175 138 FSEL--MGRKDGCSHGKGGSMHFYKKDS---GFYGGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFE 211 (394)
Q Consensus 138 lael--~g~~~~~~~G~ggs~H~~~~~~---~~~~~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~l~GDGa~~eG~~~E 211 (394)
+.+. +..+...+..+-+|--.++|+. ++.-++|++|++++.|+|+|++.|+.+. ++.|||++|||++++|++||
T Consensus 81 ~~l~G~~~~edl~~~Rq~~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~E 160 (632)
T KOG0523|consen 81 WHLAGYDREEDLKNFRQIGSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWE 160 (632)
T ss_pred HHHhccCcHHHHHHHHhhCCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHH
Confidence 6542 2223334444445433334433 3445899999999999999999999888 89999999999999999999
Q ss_pred HHHHHHHCCCC-eEEEEEcCCccccccccccccCcchh-hhcCc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEE
Q 016175 212 ALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYY-KRGDY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEM 288 (394)
Q Consensus 212 aln~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~~~~~~-~~g~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (394)
|+++|+.|+|. +|+|.+||+.+++++.+.....+-+. .+.+| |.++.|||+|++++..|+.+|+.- +++|++|.+
T Consensus 161 A~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~--k~kpt~i~~ 238 (632)
T KOG0523|consen 161 AMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSV--KGKPTAIKA 238 (632)
T ss_pred HHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhc--cCCceeeee
Confidence 99999999999 57888899999998888776665455 23455 899999999999999999988732 288999999
Q ss_pred EeeecCCCCCC
Q 016175 289 DTYRYHGHSMS 299 (394)
Q Consensus 289 ~t~R~~GHs~~ 299 (394)
.|+.+.|-...
T Consensus 239 ~t~~g~G~~~i 249 (632)
T KOG0523|consen 239 TTFIGRGSPYI 249 (632)
T ss_pred eeeeecCcccc
Confidence 99999996543
No 39
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.86 E-value=2.8e-21 Score=181.28 Aligned_cols=181 Identities=16% Similarity=0.190 Sum_probs=141.8
Q ss_pred CchHHHHHHHHhccCC-CCeeecCCcchhhHhhcCCCHHHHHHHHhCCCCCCCCCCCCccCccCCCCCccCCcCCccchh
Q 016175 98 DGQEAVAIGMEAGITK-KDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQI 176 (394)
Q Consensus 98 ~GqEa~~vg~~~aL~~-~D~~~~~yRd~~~~lsrG~~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~~~~~~g~lG~~l 176 (394)
.||++.++.....|.. .|.+++.||.... | +..+|.++ ....| .++|+.....++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~----g--l~~lf~qf-----s~~gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEE----G--MRKLFKQF-----SFPGG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHH----H--HHHHHHhc-----CCCCC--CCCCCcccCCCeeecccchhhHH
Confidence 6889888877777776 4889999997741 1 24455554 12222 56788766678889999999999
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchH---HHHHHHHHHCCCC-eEEEEEcCCcccccccccc-ccCcchhhhc
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVCENNHYGMGTAEWRA-AKSPSYYKRG 251 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~---~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~-~~~~~~~~~g 251 (394)
++|+|+|+ ++++.+|+|++|||++++|.+ ||+.+++...++. |+.|++||+|+|++++... .+..++.++.
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999985 568889999999999999996 9999999999999 6888899999999998854 3345676665
Q ss_pred -Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-----------C----CC--EEEEEEeeecCC
Q 016175 252 -DY-VPGLKVDGMDALAVKQACKFAKEHALK-----------N----GP--MILEMDTYRYHG 295 (394)
Q Consensus 252 -~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-----------~----gP--~lIe~~t~R~~G 295 (394)
+| ++.+.|||+|+.+|++++++|++++|. + +| =+|.++|.++..
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~ 207 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWT 207 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCC
Confidence 56 999999999999999999988876542 1 23 267788887753
No 40
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.86 E-value=9.1e-21 Score=206.73 Aligned_cols=218 Identities=18% Similarity=0.056 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHhc--cccccccccCCchHHHHHHHHhccCCCCeee---cCCcchhhHhhcCCC---HHHHHHHHh
Q 016175 71 MATMRRMEIAADSLYKA--KLVRGFCHLYDGQEAVAIGMEAGITKKDSII---TAYRDHCTFLGRGGT---LLEVFSELM 142 (394)
Q Consensus 71 m~~~R~~e~~~~~l~~~--g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~---~~yRd~~~~lsrG~~---~~~vlael~ 142 (394)
...+|..-..+...... +++ -.| +|..++++.+..+|...-+-+ ...|| +++++||. +|+++. +.
T Consensus 93 ~~~iR~~a~~mv~~A~~~~~~~--GGH--~~s~~S~a~i~~vl~~~~~r~~~~~~~~D--~V~skGHasp~lYA~~~-l~ 165 (896)
T PRK13012 93 AAIIRWNALAMVVRANRAYGEL--GGH--IASYASAADLFEVGFNHFFRGRDDAGGGD--LVYFQPHSAPGIYARAF-LE 165 (896)
T ss_pred HHHHHHHHHHHHHhcCCCCCCC--CCC--CcccHHHHHHHHHHHHhhcCCCCCCCCCC--EEEECcchHHHHHHHHH-Hc
Confidence 44566665554433222 112 147 788888888888876432211 23577 58999998 444433 33
Q ss_pred CC---CCCCCCCCC--CccCccCCCC-----CccCCcCCccchhhHHHHHHHHhhh-------CCCCCeEEEEEcccccc
Q 016175 143 GR---KDGCSHGKG--GSMHFYKKDS-----GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAAN 205 (394)
Q Consensus 143 g~---~~~~~~G~g--gs~H~~~~~~-----~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~l~GDGa~~ 205 (394)
|+ +...++++. ++.|.++|.. .+..++|+||+|++.|+|.|++.|| +..++.|+|++|||+++
T Consensus 166 G~l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~ 245 (896)
T PRK13012 166 GRLSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMD 245 (896)
T ss_pred CCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhc
Confidence 32 222222222 2233332221 2456899999999999999999994 45678999999999999
Q ss_pred cchHHHHHHHHHHCCCC-eEEEEEcCCcccccccccccc-Ccchhhh--cCcccEEEE----------------------
Q 016175 206 QGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK-SPSYYKR--GDYVPGLKV---------------------- 259 (394)
Q Consensus 206 eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~-~~~~~~~--g~~~~~~~V---------------------- 259 (394)
||++|||+.+|++++|. +||||++|...+..++..... ..++..+ ++.|.+++|
T Consensus 246 Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~ 325 (896)
T PRK13012 246 EPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRF 325 (896)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHH
Confidence 99999999999999998 799999999988777654322 1234332 233777888
Q ss_pred ----e-------------------------------------------CCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 260 ----D-------------------------------------------GMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 260 ----D-------------------------------------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
| |||+.+|++|++.|... +++|++|.++|.+
T Consensus 326 ~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~--~~~PtvIla~Tvk 403 (896)
T PRK13012 326 AETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH--KGQPTVILAKTKK 403 (896)
T ss_pred HhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeee
Confidence 8 99999999999888753 2689999999999
Q ss_pred cCCCC
Q 016175 293 YHGHS 297 (394)
Q Consensus 293 ~~GHs 297 (394)
++|.+
T Consensus 404 G~G~~ 408 (896)
T PRK13012 404 GYGMG 408 (896)
T ss_pred cCCCC
Confidence 99987
No 41
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.84 E-value=5.9e-20 Score=199.76 Aligned_cols=229 Identities=21% Similarity=0.071 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccCCCCeee---cCCcchhhHhhcCCC---H
Q 016175 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSII---TAYRDHCTFLGRGGT---L 134 (394)
Q Consensus 61 ~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~~~D~~~---~~yRd~~~~lsrG~~---~ 134 (394)
+.++.+.... .+|..-..+......+.+....| +|.-++++.+..+|...-+-. +..|| +++++||. +
T Consensus 77 ~~~~e~~i~~--~iR~~a~~mv~~An~~~~~~GGH--~~s~~S~a~i~~vl~~~~~r~~~~~~~~D--~V~skGHasp~l 150 (891)
T PRK09405 77 DLELERRIRS--YIRWNAAAMVLRANKKDLGLGGH--ISSFASSATLYEVGFNHFFRAPNEPHGGD--LVFFQGHASPGI 150 (891)
T ss_pred CHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCc--ccChHHHHHHHHHHHHhhCCCCCCCCCCC--EEEECchHHHHH
Confidence 3444443333 44555444443333322223467 788888887777765332221 22355 78899998 4
Q ss_pred HHHHHHHhCC---CCCCCCCC-----CCccCccC---CCCCccCCcCCccchhhHHHHHHHHhhh-------CCCCCeEE
Q 016175 135 LEVFSELMGR---KDGCSHGK-----GGSMHFYK---KDSGFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTF 196 (394)
Q Consensus 135 ~~vlael~g~---~~~~~~G~-----ggs~H~~~---~~~~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv 196 (394)
|+++. +.|+ +...++++ +-+.|+.. |+ .+...+|+||.|.+.|+|.|++.|| ++.++.|+
T Consensus 151 YA~~~-l~G~l~~e~L~~fR~~~~g~gl~syPhp~~~p~-~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~ 228 (891)
T PRK09405 151 YARAF-LEGRLTEEQLDNFRQEVDGKGLSSYPHPWLMPD-FWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVW 228 (891)
T ss_pred HHHHH-HcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCC-CeecCccccchhHHHHHHHHHhCccccccccccCCCceEE
Confidence 44433 3343 22222222 22343321 21 2445799999999999999999994 45678999
Q ss_pred EEEcccccccchHHHHHHHHHHCCCC-eEEEEEcCCcccccccccccc-Ccchhhh--cCcccEEEE-------------
Q 016175 197 ALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK-SPSYYKR--GDYVPGLKV------------- 259 (394)
Q Consensus 197 ~l~GDGa~~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~-~~~~~~~--g~~~~~~~V------------- 259 (394)
|++|||+++||++|||+.+|+.++|. +|+||++|...+..++..... ..++.++ ++.|.+++|
T Consensus 229 ~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d 308 (891)
T PRK09405 229 AFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKD 308 (891)
T ss_pred EEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccC
Confidence 99999999999999999999999998 799999999988777654211 1234332 223777888
Q ss_pred -------------e-------------------------------------------CCCHHHHHHHHHHHHHHHhhCCC
Q 016175 260 -------------D-------------------------------------------GMDALAVKQACKFAKEHALKNGP 283 (394)
Q Consensus 260 -------------D-------------------------------------------G~D~~av~~a~~~A~~~ar~~gP 283 (394)
| |||+.+|++|++.|.+. +++|
T Consensus 309 ~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~--~~~P 386 (891)
T PRK09405 309 TSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH--KGQP 386 (891)
T ss_pred CccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC--CCCC
Confidence 4 99999999999988763 3789
Q ss_pred EEEEEEeeecCCC-CCC
Q 016175 284 MILEMDTYRYHGH-SMS 299 (394)
Q Consensus 284 ~lIe~~t~R~~GH-s~~ 299 (394)
++|.++|.+++|. +..
T Consensus 387 tvIia~TvkG~G~~~~~ 403 (891)
T PRK09405 387 TVILAKTIKGYGMGEAG 403 (891)
T ss_pred EEEEEeceecCCCCccc
Confidence 9999999999998 544
No 42
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.78 E-value=1.3e-17 Score=162.88 Aligned_cols=233 Identities=20% Similarity=0.165 Sum_probs=158.2
Q ss_pred CCcchhhHhhcCCCHH-HHHHHHhCCCC------CCCCCCCCccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCC
Q 016175 120 AYRDHCTFLGRGGTLL-EVFSELMGRKD------GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192 (394)
Q Consensus 120 ~yRd~~~~lsrG~~~~-~vlael~g~~~------~~~~G~ggs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~ 192 (394)
-||+|++...+|+++. .++.+.+|+.+ ||+.+.++.+|+... ++...+.++|.++++|.|+++|.+.++.+
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999999976 88889888776 888888888876554 56677899999999999999999887665
Q ss_pred Ce-EEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcccccccccccc-----------------Ccchhhhc-Cc
Q 016175 193 TV-TFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK-----------------SPSYYKRG-DY 253 (394)
Q Consensus 193 ~~-vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~-----------------~~~~~~~g-~~ 253 (394)
.+ |++++|||++.++.+ |+|+.|+.+++|++|||.||.+.+.|-.+.... ..++.... ++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 55 555999999988886 999999999999999999999765443221110 11333332 22
Q ss_pred -cc-EEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCCCCCCCCC----------CC----CC-Cchhhhhh--
Q 016175 254 -VP-GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPG----------ST----YR-TRDEISGV-- 314 (394)
Q Consensus 254 -~~-~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~----------~~----YR-~~~e~~~~-- 314 (394)
++ +.+++-.|+.++.+++++|+++ +||.+|++.+.=-.|+-..+.. +. || .+.++..-
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~~---~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~tg~wplye~~~g~~~~~~~ 247 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKEI---RGFKFIHLLAPCPPGWRFDPDKTIEIARLAVETGVWPLFEYENGKFKLNSP 247 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEeCCCCCCCCcChHHHHHHHHHHHHcCCceEEEEECCEEEEccC
Confidence 33 3477888999999999999975 9999999984322232221110 00 11 01111100
Q ss_pred ------hhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016175 315 ------RQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAK 358 (394)
Q Consensus 315 ------~~~~DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~ 358 (394)
+..+-|+.-|-+.--...-+.+++++++++++.+..+.-.+.++
T Consensus 248 ~~~~~~~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~ 297 (300)
T PRK11864 248 SKTLLDKKKRKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAK 297 (300)
T ss_pred CccccccccCCCHHHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223544433332233356788888888888887766554443
No 43
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.71 E-value=4.8e-17 Score=154.62 Aligned_cols=216 Identities=24% Similarity=0.301 Sum_probs=136.0
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccC-CCCeeec--CCcchh
Q 016175 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDHC 125 (394)
Q Consensus 49 ~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~-~~D~~~~--~yRd~~ 125 (394)
+++.|.....+|.+||.+|-+ .+|.+... ...+.| |.+-+..|---..+++...+. |.|.+++ .|....
T Consensus 3 ~I~~p~dlk~ls~~eL~~La~---eiR~~ii~--~vs~~G---GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~ 74 (270)
T PF13292_consen 3 KINSPEDLKKLSIEELEQLAQ---EIREFIIE--TVSKTG---GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYV 74 (270)
T ss_dssp G-SSHHHHTTS-GGGHHHHHH---HHHHHHHH--HCTCCC---STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HH
T ss_pred CCCCHHHHHcCCHHHHHHHHH---HHHHHHHH--HHhhcC---CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccch
Confidence 455677777889999888844 77877652 222332 433334565555666666666 6788886 688876
Q ss_pred hHhhcCCCHHHHHHHHhCCCCCC-CCC-CCC-ccCccCC--CCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEc
Q 016175 126 TFLGRGGTLLEVFSELMGRKDGC-SHG-KGG-SMHFYKK--DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (394)
Q Consensus 126 ~~lsrG~~~~~vlael~g~~~~~-~~G-~gg-s~H~~~~--~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~G 200 (394)
|-| +.||.... +-. .+| |..+-.. ++.. .+.|+-+.++++|+|+|.|..+++.+..||+++|
T Consensus 75 HKi------------LTGR~~~f~TlRq~gGlSGF~~r~ES~~D~-f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIG 141 (270)
T PF13292_consen 75 HKI------------LTGRRDRFHTLRQYGGLSGFPKRSESEYDA-FGAGHSSTSISAALGMAVARDLKGEDRKVVAVIG 141 (270)
T ss_dssp HHH------------CTTTCCCGGGTTSTTS--SS--TTT-TT---S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEE
T ss_pred hhh------------ccCcHHHhchhhhcCCcCCCCCcccCCCCc-ccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 666 45665532 222 222 2332211 1222 3689999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHCCCCeEEEEEcCCcccccccccc-------ccCcc---------------------------
Q 016175 201 DGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRA-------AKSPS--------------------------- 246 (394)
Q Consensus 201 DGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~-------~~~~~--------------------------- 246 (394)
|||+.-|..+||||.|+..+-++|+|+++|+.+|+.+.... ...+.
T Consensus 142 DGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~ 221 (270)
T PF13292_consen 142 DGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKE 221 (270)
T ss_dssp TTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC------------------------------------
T ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 99999999999999999999999999999999987654210 00000
Q ss_pred ---------hhhhcCcccE-EEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 247 ---------YYKRGDYVPG-LKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 247 ---------~~~~g~~~~~-~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
|..+| +.. -.|||||+.++.++++.+++. +||++|++.|
T Consensus 222 s~K~~~~~lFe~LG--~~Y~GPiDGHdl~~Li~~l~~~K~~---~gPvllHV~T 270 (270)
T PF13292_consen 222 SLKGFSPNLFEELG--FDYIGPIDGHDLEELIEVLENAKDI---DGPVLLHVIT 270 (270)
T ss_dssp -------CCCHHCT---EEEEEEETT-HHHHHHHHHHHCCS---SSEEEEEEE-
T ss_pred hhhhhhHHHHHHcC--CeEEeccCCCCHHHHHHHHHHHhcC---CCCEEEEEeC
Confidence 11112 111 268999999999988876654 9999999987
No 44
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.70 E-value=3.1e-16 Score=162.36 Aligned_cols=227 Identities=21% Similarity=0.262 Sum_probs=157.9
Q ss_pred ceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCchHHHHHHHHhccC-CCCeeec--CCcc
Q 016175 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (394)
Q Consensus 47 ~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~aL~-~~D~~~~--~yRd 123 (394)
+.++..|.....+|.++|.+|-. .+|.+-... ..+.| |..-+..|---..+++...+. |.|.+++ .|..
T Consensus 5 L~~i~~P~dLk~ls~~eL~~La~---EiR~~li~~--vS~~G---GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQa 76 (627)
T COG1154 5 LDKINSPADLKKLSIEELPQLAD---EIREFLLEV--VSATG---GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQA 76 (627)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHHHHH--hccCC---CccCCCcChhhhhHHHHHHhCCCCCCeEEecCccc
Confidence 34566788888999999988854 777776532 22332 323334555445556666665 6788776 6887
Q ss_pred hhhHhhcCCCHHHHHHHHhCCCCCCCCC--CCC-ccCcc--CCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEE
Q 016175 124 HCTFLGRGGTLLEVFSELMGRKDGCSHG--KGG-SMHFY--KKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFAL 198 (394)
Q Consensus 124 ~~~~lsrG~~~~~vlael~g~~~~~~~G--~gg-s~H~~--~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l 198 (394)
..|-|..| |.+....- .+| |.... ..++.+ ...|+-+..++.|+|+|.|..+++.++.||++
T Consensus 77 YpHKiLTG------------R~e~f~tlRq~~GlsGf~~r~ESe~D~-f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaV 143 (627)
T COG1154 77 YPHKILTG------------RREQFDTLRQKDGLSGFPKREESEHDW-FGVGHSSTSISAALGMAKARDLKGEDRNVVAV 143 (627)
T ss_pred chhHHhcC------------chhhcchhhhcCCCCCCCCcccCCCcc-cccCchHHHHHHHhhHHHHHHhcCCCCcEEEE
Confidence 77766444 43322111 111 11111 111222 36789999999999999999999999999999
Q ss_pred EcccccccchHHHHHHHHH-HCCCCeEEEEEcCCccccccccc-------cccCc-------------------------
Q 016175 199 YGDGAANQGQLFEALNIAA-LWDLPAILVCENNHYGMGTAEWR-------AAKSP------------------------- 245 (394)
Q Consensus 199 ~GDGa~~eG~~~Ealn~Aa-~~~LpvI~vv~NN~~~i~~~~~~-------~~~~~------------------------- 245 (394)
+||||+.-|..|||||.|+ ..+-|+|+|+++|..+|+.+... ....+
T Consensus 144 IGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~ 223 (627)
T COG1154 144 IGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAK 223 (627)
T ss_pred ECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHH
Confidence 9999999999999999998 55678999999999999866531 00000
Q ss_pred --------------chhhhc-CcccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCCCCCC
Q 016175 246 --------------SYYKRG-DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 246 --------------~~~~~g-~~~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (394)
-|..+| .|+ --|||||++++..+++.+.+. ++|+||++.|.+|+|-..+
T Consensus 224 r~e~~~K~l~~~~~lFeelGf~Yi--GPiDGHni~~Li~~Lk~~kd~---~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 224 RAEESIKGLLVPGTLFEELGFNYI--GPIDGHNLEELIPTLKNAKDL---KGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred HHHHhhhcccCchhhHHHhCCeeE--CCcCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCChh
Confidence 122233 121 257999999999999887764 9999999999999998876
No 45
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.68 E-value=1.1e-15 Score=163.48 Aligned_cols=223 Identities=17% Similarity=0.144 Sum_probs=157.8
Q ss_pred ceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccccccCCchHHHHHHHHhccC-CCCeeec--CCc
Q 016175 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSL-YKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYR 122 (394)
Q Consensus 47 ~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l-~~~g~i~gf~h~~~GqEa~~vg~~~aL~-~~D~~~~--~yR 122 (394)
+..++.|.....||.++|.+|- ..+|.+... .. .+.| |.+-+..|---..+++..++. |.|.+++ .|.
T Consensus 79 L~~i~~P~dlk~L~~~eL~~La---~EiR~~li~--~v~s~~G---GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ 150 (701)
T PLN02225 79 LDSIETPLQLKNLSVKELKLLA---DEIRTELHS--VLWKKTQ---KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQ 150 (701)
T ss_pred hhhcCCHHHHhhCCHHHHHHHH---HHHHHHHHH--HhhcccC---CCcCCCccHHHHHHHHHHHhCCCCCceeeccccc
Confidence 5566668778889999988884 478877653 22 2333 433335666555666666666 7888886 788
Q ss_pred chhhHhhcCCCHHHHHHHHhCCCCCC-CCCCCC-ccCcc--CCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEE
Q 016175 123 DHCTFLGRGGTLLEVFSELMGRKDGC-SHGKGG-SMHFY--KKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFAL 198 (394)
Q Consensus 123 d~~~~lsrG~~~~~vlael~g~~~~~-~~G~gg-s~H~~--~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l 198 (394)
...|-|..| |.... ++-.+| |..+. ..++.. .+.|+-+..++.|+|+|.|..+++.++.||++
T Consensus 151 ~Y~HKiLTG------------R~~~f~~Rq~~GlsGf~~r~ES~~D~-f~~GHssTSiSaalG~a~ardl~g~~~~vvaV 217 (701)
T PLN02225 151 TYAHKVLTR------------RWSAIPSRQKNGISGVTSQLESEYDS-FGTGHGCNSISAGLGLAVARDIKGKRDRVVAV 217 (701)
T ss_pred cchhhHhcC------------ChhhcCccccCCcCCCCCCCCCCCCC-CCCChHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 887776444 43322 222222 22221 112222 36799999999999999999999999999999
Q ss_pred EcccccccchHHHHHHHHHHCCCCeEEEEEcCCcccccc--------cccc-------c---------------------
Q 016175 199 YGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA--------EWRA-------A--------------------- 242 (394)
Q Consensus 199 ~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~--------~~~~-------~--------------------- 242 (394)
+||||+.-|..|||||.|+..+-++|+|+++|+.+|+.+ .... .
T Consensus 218 IGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~ 297 (701)
T PLN02225 218 IDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGK 297 (701)
T ss_pred EcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999877 1100 0
Q ss_pred ------------------c-C-cchhhhc-CcccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecC
Q 016175 243 ------------------K-S-PSYYKRG-DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (394)
Q Consensus 243 ------------------~-~-~~~~~~g-~~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (394)
+ . .-|..+| .|+ -.|||||++++..+++.+++. . +||+||++.|-+++
T Consensus 298 ~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~--GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 298 GMYEWAAKVDEYARGMVGPTGSTLFEELGLYYI--GPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHHHHHHHHHHhhhccCCCccCcHHHcCCeEE--CccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 0 0 1123334 221 258999999999999988765 2 49999999999987
No 46
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.67 E-value=3.3e-16 Score=144.82 Aligned_cols=120 Identities=23% Similarity=0.244 Sum_probs=94.1
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEE-EcCCccccccccc-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEWR----- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv-~NN~~~i~~~~~~----- 240 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|+++++|+|+|| +|++|++......
T Consensus 50 ~~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~ 123 (196)
T cd02013 50 LSFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNN 123 (196)
T ss_pred CCCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCC
Confidence 35699999999999999986 67899999999998874 555 888999999986666 5556886432111
Q ss_pred -----cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecC
Q 016175 241 -----AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (394)
Q Consensus 241 -----~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (394)
....++|.+.+ ++ +++++|+ ++.++.+++++|++.++.++|+|||+.+.+..
T Consensus 124 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 124 RFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred CcccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 11246888887 55 8899997 58899999999998655589999999986543
No 47
>PRK05261 putative phosphoketolase; Provisional
Probab=99.66 E-value=1.4e-15 Score=164.14 Aligned_cols=140 Identities=18% Similarity=0.180 Sum_probs=113.6
Q ss_pred CccCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchH---HHHHHHHHHCCCC-eEEEEEc
Q 016175 154 GSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVCEN 229 (394)
Q Consensus 154 gs~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~---~Ealn~Aa~~~Lp-vI~vv~N 229 (394)
.++|+.....|+...+|+||+++++|+|+|+.. ++.+|+|++|||++++|.+ |++.+++...++. |+.|+++
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~~----~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFDN----PDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHcC----CCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 457876555688889999999999999999754 6789999999999999984 8888888888888 6788889
Q ss_pred CCccccccccccc-cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHH-----------Hhh----CCCE--EEEEE
Q 016175 230 NHYGMGTAEWRAA-KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEH-----------ALK----NGPM--ILEMD 289 (394)
Q Consensus 230 N~~~i~~~~~~~~-~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~-----------ar~----~gP~--lIe~~ 289 (394)
|+|+|++++.... ...++.++. +| ++.+.|||+|+.++++++++|++. ||. .+|+ +|+++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~r 281 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLR 281 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Confidence 9999999988653 334566654 45 889999999999999887666543 332 3799 99999
Q ss_pred eeecCCCC
Q 016175 290 TYRYHGHS 297 (394)
Q Consensus 290 t~R~~GHs 297 (394)
|.+|.|-.
T Consensus 282 T~kG~g~p 289 (785)
T PRK05261 282 TPKGWTGP 289 (785)
T ss_pred CCccCCCC
Confidence 99998844
No 48
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.65 E-value=6e-16 Score=138.02 Aligned_cols=114 Identities=26% Similarity=0.403 Sum_probs=88.9
Q ss_pred cCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc-----
Q 016175 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW----- 239 (394)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~----- 239 (394)
.++.|+||+++|.|+|++++.+ ++.|+|++|||++++ .+++|++|..+++|+++||.||+ |++.....
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~~----~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAAP----DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhCC----CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 4578999999999999999873 689999999999987 56889999999999888887776 55433221
Q ss_pred -----ccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 240 -----RAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 240 -----~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
.....+++.+.+ ++ +++++|++ +.++.++++++.+. ++|++||+.|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~a~~~---~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEALAA---GGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 122345777776 45 88899985 77887777776632 8999999976
No 49
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.65 E-value=9.8e-16 Score=138.38 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=88.7
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEc-CCcccccccccc----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN-NHYGMGTAEWRA---- 241 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~N-N~~~i~~~~~~~---- 241 (394)
++.|+||+++|.|+|+++|. +++.|+|++|||++++. .++|.+|+.++||+++||.| |+|++.......
T Consensus 45 ~~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 118 (172)
T cd02004 45 GTFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGL 118 (172)
T ss_pred CCCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccC
Confidence 45799999999999999986 57899999999999874 46699999999997666655 569876433221
Q ss_pred -------ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 242 -------AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 242 -------~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
...++|.+.+ +| +++.+|+ +++++.++++++.+. ++|++||+.+
T Consensus 119 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i 171 (172)
T cd02004 119 GLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALAS---GKPALINVII 171 (172)
T ss_pred CCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHHc---CCCEEEEEEc
Confidence 1345788777 55 8999998 488888888877653 8999999975
No 50
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.63 E-value=2e-15 Score=136.85 Aligned_cols=110 Identities=25% Similarity=0.353 Sum_probs=87.6
Q ss_pred CCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccc--------
Q 016175 170 GIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-------- 240 (394)
Q Consensus 170 g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~-------- 240 (394)
|+||+++|.|+|+++|. +++.++|++|||+++++. .+|.+|..+++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 99999999999999986 478899999999998874 569999999999988887775 887542111
Q ss_pred ---------cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 241 ---------AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 241 ---------~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
....++|.+.+ ++ +++++|++ +.++.+++++|++. ++|++||+.+
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~~---~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALAE---GGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 01235777776 45 88999986 88888888887753 8999999864
No 51
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.61 E-value=8.5e-15 Score=133.27 Aligned_cols=116 Identities=19% Similarity=0.120 Sum_probs=88.6
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEE-cCCcccccccccc----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEWRA---- 241 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~-NN~~~i~~~~~~~---- 241 (394)
.+.|+||+++|.|+|+++|. +++.||++.|||++.+.. +++|.+|+.+++|+++||. ||.|++.......
T Consensus 48 ~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 48 DTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred cccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 46899999999999999997 467899999999986532 5779999999999765555 5567754322110
Q ss_pred -----ccCcchhhhc-Cc-ccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 242 -----AKSPSYYKRG-DY-VPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 242 -----~~~~~~~~~g-~~-~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
...++|.+.+ ++ +++++| |++|+.++.+++++|++. ++|++|+++.
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~---~gp~lI~v~~ 176 (178)
T cd02008 123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAV---PGVSVIIAKR 176 (178)
T ss_pred cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 1235787776 55 888888 788998888888888753 8999999874
No 52
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.60 E-value=3.9e-15 Score=138.15 Aligned_cols=118 Identities=25% Similarity=0.257 Sum_probs=91.8
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccc-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~----- 240 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|++++||+++||.||+ |++......
T Consensus 54 ~~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~ 127 (202)
T cd02006 54 GQAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM-IEE-LAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMD 127 (202)
T ss_pred CCccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc-HHH-HHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCc
Confidence 45799999999999999986 57899999999998874 444 8899999999877776665 886432110
Q ss_pred --------c-------ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeee
Q 016175 241 --------A-------AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (394)
Q Consensus 241 --------~-------~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (394)
. ...++|.+.+ ++ +++.+|+ ++.++.+++++|++.+++ ++|+|||+.+-+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 128 YQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred cccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 0 0136888887 55 8899996 588999999999875544 899999999854
No 53
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.58 E-value=1.2e-14 Score=132.21 Aligned_cols=115 Identities=25% Similarity=0.342 Sum_probs=88.9
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~------ 239 (394)
++.|+||+++|.|+|+++|. +++.++|++|||+++.+ +.| |.++..+++|+++||.||+ |++.....
T Consensus 48 ~~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~ 121 (178)
T cd02014 48 GLLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQP 121 (178)
T ss_pred CCCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCC
Confidence 35699999999999999986 56899999999999987 677 7889999999888887775 88743211
Q ss_pred ---ccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 ---RAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ---~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.....++|.+.+ +| +++++|+ ++.++.++++++++. ++|+|||+.+.+
T Consensus 122 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~~---~~p~liev~~~~ 174 (178)
T cd02014 122 EFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALAA---DGPVVIDVVTDP 174 (178)
T ss_pred ceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 011235788776 55 8888887 577887777776643 899999999853
No 54
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.57 E-value=3.5e-14 Score=129.64 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=87.2
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCC-Ce-EEEEEcCCccccccccccc-cC
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PA-ILVCENNHYGMGTAEWRAA-KS 244 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~L-pv-I~vv~NN~~~i~~~~~~~~-~~ 244 (394)
..|+||+++|.|+|+++|.+ +.|||++|||+++++ . .++.+++.+++ |+ ++|++||+|++........ ..
T Consensus 40 ~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~-~-~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~ 112 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN-L-GALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKK 112 (179)
T ss_pred cccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC-H-HHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCC
Confidence 37999999999999999963 689999999998653 2 34777888985 66 5556677899754332222 24
Q ss_pred cchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCC
Q 016175 245 PSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (394)
Q Consensus 245 ~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (394)
++|.+.+ ++ +++.+|+| ++.++.+++++|+ ++|++||+.|.+..+
T Consensus 113 ~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~-----~gp~lIev~~~~~~~ 159 (179)
T cd03372 113 TDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL-----DGPSFIHVKIKPGNT 159 (179)
T ss_pred CCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc-----CCCEEEEEEEcCCCC
Confidence 5788877 55 88999987 7888888877765 689999999965544
No 55
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.57 E-value=1.2e-14 Score=133.03 Aligned_cols=114 Identities=29% Similarity=0.455 Sum_probs=86.6
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc------cc
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~------~~ 240 (394)
+.|+||+++|.|+|+++|. +++.|||++|||+++.. +.| |.+|+++++|+++||.||+ |++.... ..
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~~e-L~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~ 121 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-IQE-LATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGR 121 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCc
Confidence 5689999999999999986 56889999999998863 445 9999999999877666665 6653211 00
Q ss_pred -----cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 -----AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 -----~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
....++|.+.+ ++ +++++|++ ..++.+++++|.+. ++|+|||+.+.+
T Consensus 122 ~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~~---~~p~liev~~~~ 175 (186)
T cd02015 122 YSHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKEALAS---DGPVLLDVLVDP 175 (186)
T ss_pred eeeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 11235788877 55 88999985 67877777776642 899999999854
No 56
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.55 E-value=4.7e-14 Score=129.80 Aligned_cols=116 Identities=18% Similarity=0.127 Sum_probs=87.4
Q ss_pred cCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCC-CeEEEEEcC-CccccccccccccCcc
Q 016175 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENN-HYGMGTAEWRAAKSPS 246 (394)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~L-pvI~vv~NN-~~~i~~~~~~~~~~~~ 246 (394)
+|+||+++|.|+|+++|. +++.|||++|||+++.. .++|.+++.+++ |+++||.|| +|++..........++
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 499999999999999996 56789999999998752 356889999997 576666655 5876432221222457
Q ss_pred hhhhc-Cc-ccE-EEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCC
Q 016175 247 YYKRG-DY-VPG-LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (394)
Q Consensus 247 ~~~~g-~~-~~~-~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (394)
|.+.+ ++ +++ .+|+ ++.++.+++++|++. ++|++||+.+-+..+
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~~~~~~~ 167 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALAA---DGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHhC---CCCEEEEEEecCCCC
Confidence 88876 45 776 4786 788999998888753 899999999966554
No 57
>PRK06163 hypothetical protein; Provisional
Probab=99.55 E-value=6.7e-14 Score=130.19 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=94.6
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHC-CCCeEEEEEcC-Cccccccccc-cccC
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVCENN-HYGMGTAEWR-AAKS 244 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~-~LpvI~vv~NN-~~~i~~~~~~-~~~~ 244 (394)
..|+||+++|.|+|+++|. +++.|||++|||+++.. .. .|.+++.+ ++|+++||.|| +|++...... ....
T Consensus 55 ~~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~-~~-eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~ 128 (202)
T PRK06163 55 MLGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ-LG-ALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQT 128 (202)
T ss_pred eecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH-HH-HHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCC
Confidence 3799999999999999986 67889999999998763 33 47888776 78987777766 5886322211 1234
Q ss_pred cchhhhc-Cc-cc-EEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCCCCCCCCCCCCCCchhhhh
Q 016175 245 PSYYKRG-DY-VP-GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (394)
Q Consensus 245 ~~~~~~g-~~-~~-~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~ 313 (394)
+||.+.+ ++ ++ +++|+ +..++..+++++++. ++|+|||+.+.+. .+.+...|++.|++.
T Consensus 129 ~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~~-----~~~~~~~~~~~~~~~ 190 (202)
T PRK06163 129 VDVVAIARGAGLENSHWAA--DEAHFEALVDQALSG---PGPSFIAVRIDDK-----PGVGTTERDPAQIRE 190 (202)
T ss_pred CCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecCC-----CCCCCCCCCHHHHHH
Confidence 6888877 45 76 56775 788999999888753 8999999998643 233334567776653
No 58
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.54 E-value=3.9e-14 Score=128.99 Aligned_cols=115 Identities=18% Similarity=0.306 Sum_probs=88.4
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEE-cCCcccccccc-----c
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW-----R 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~-NN~~~i~~~~~-----~ 240 (394)
++.|.||+++|.|+|+++|. +++.|||++|||+++.. . ..|.+|+++++|+|+||. |++|++..... +
T Consensus 45 ~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~-~-~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~ 118 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN-S-QELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGR 118 (177)
T ss_pred CCChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH-H-HHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 46789999999999999986 67899999999998764 3 448889999999866655 55688643111 0
Q ss_pred ----cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 ----AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 ----~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
....++|.+.+ ++ +++.+|+ +++++.+++++|++. ++|+|||+.+-+
T Consensus 119 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~ 171 (177)
T cd02010 119 DSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALAA---DGVHVIDCPVDY 171 (177)
T ss_pred cccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecc
Confidence 11235788777 55 8888986 688999999888754 899999999843
No 59
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.53 E-value=9.1e-14 Score=129.41 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=88.6
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEE-EEEcCCccccccccc-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAIL-VCENNHYGMGTAEWR----- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~-vv~NN~~~i~~~~~~----- 240 (394)
++.|+||+++|.|+|+++|. +++.|||+.|||+++.+ .. .|.+|+++++|+++ |++||+|++......
T Consensus 45 ~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 118 (205)
T cd02003 45 YGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLML-HS-EIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSG 118 (205)
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhcc-HH-HHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCc
Confidence 46799999999999999986 57889999999998875 34 48889999999754 555556886321100
Q ss_pred -------c-----------ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeec
Q 016175 241 -------A-----------AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (394)
Q Consensus 241 -------~-----------~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (394)
. ...++|.+.+ ++ +++++|+ +++++.+|+++|++. ++|+|||+.+-+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIeV~v~~~ 186 (205)
T cd02003 119 SFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKAS---DRTTVIVIKTDPK 186 (205)
T ss_pred cccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeecc
Confidence 0 1235788777 55 8889995 799999999888743 8999999999653
No 60
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.53 E-value=1.6e-14 Score=128.02 Aligned_cols=113 Identities=30% Similarity=0.510 Sum_probs=87.9
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccccc-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~~----- 240 (394)
...|.||.++|.|+|+++|. +++.|||++|||++... ..| |.+|.++++|+++||.|| .|++......
T Consensus 25 ~~~g~mG~~~~~aiGa~~a~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~ 98 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALAR----PDRPVVAITGDGSFLMS-LQE-LATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGG 98 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH-GGG-HHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTST
T ss_pred CCccccCCHHHhhhHHHhhc----CcceeEEecCCcceeec-cch-hHHHhhccceEEEEEEeCCcceEeccccccCcCc
Confidence 46899999999999999984 68999999999998875 444 889999999986666655 5876432210
Q ss_pred -----c---ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEE
Q 016175 241 -----A---AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEM 288 (394)
Q Consensus 241 -----~---~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (394)
. ...++|.+.+ ++ +++++|+..|++++.+++++|++. +||+|||+
T Consensus 99 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~---~gp~vIeV 153 (153)
T PF02775_consen 99 RFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALES---GGPAVIEV 153 (153)
T ss_dssp CHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHS---SSEEEEEE
T ss_pred ccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhC---CCcEEEEc
Confidence 1 3345787776 45 889999877779999999998843 99999996
No 61
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.52 E-value=6.3e-14 Score=125.34 Aligned_cols=111 Identities=20% Similarity=0.145 Sum_probs=85.1
Q ss_pred cCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHC-CCCeEEEEE-cCCccccccccccccCcc
Q 016175 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVCE-NNHYGMGTAEWRAAKSPS 246 (394)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~-~LpvI~vv~-NN~~~i~~~~~~~~~~~~ 246 (394)
.|+||+++|.|+|+++|.+ +.|||+.|||+++.. ..| |.+++.+ ++|+++||. |+.|++..........++
T Consensus 41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~m~-~~e-l~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLLMN-PGV-LLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHHhc-ccH-HHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 8999999999999999862 789999999998653 333 7788888 599866665 556886432222222468
Q ss_pred hhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEee
Q 016175 247 YYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (394)
Q Consensus 247 ~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (394)
|.+.+ ++ +++++|+ ++.++.+++++|++. ++|++||+.+-
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLAT---TGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHhC---CCCEEEEEEec
Confidence 88887 55 8888885 689999999988763 89999999874
No 62
>PRK07524 hypothetical protein; Provisional
Probab=99.51 E-value=7.3e-14 Score=147.36 Aligned_cols=118 Identities=27% Similarity=0.361 Sum_probs=94.1
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccc--------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTA-------- 237 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~-------- 237 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. +.| |.+|++++||+++||.|| +|++...
T Consensus 404 ~~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~ 477 (535)
T PRK07524 404 TGYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIE 477 (535)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCC
Confidence 34699999999999999986 67899999999999764 666 999999999987777766 6885321
Q ss_pred -ccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCC
Q 016175 238 -EWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (394)
Q Consensus 238 -~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (394)
.......+||.+.+ ++ +++++|+ ++.++.++++++++. ++|+|||+.+.|+.+
T Consensus 478 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~~~~ 533 (535)
T PRK07524 478 PVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFAR---PGPTLIEVDQACWFA 533 (535)
T ss_pred ccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEECCcccc
Confidence 11112346788877 55 8899996 788998888888754 899999999999876
No 63
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.48 E-value=2.2e-13 Score=124.73 Aligned_cols=116 Identities=21% Similarity=0.222 Sum_probs=87.6
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCe-EEEEEcCCccccccccc-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPA-ILVCENNHYGMGTAEWR----- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~Lpv-I~vv~NN~~~i~~~~~~----- 240 (394)
+..|.||+++|.|+|+++|. +++.|+|++|||+++. .++| |.+|+++++|+ |+|++||+|++......
T Consensus 47 ~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~ 120 (183)
T cd02005 47 PLWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASY 120 (183)
T ss_pred cchhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCc
Confidence 46799999999999999986 4679999999999976 5788 77899999996 55556667986432111
Q ss_pred -cccCcchhhhc-Cc-----ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 -AAKSPSYYKRG-DY-----VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 -~~~~~~~~~~g-~~-----~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
....++|.+.+ +| +++++| +++.++.++++++++ +.++|+|||+.+.+
T Consensus 121 ~~~~~~d~~~ia~a~G~~~~~~~~~v--~~~~el~~al~~a~~--~~~~p~liev~~~~ 175 (183)
T cd02005 121 NDIANWNYTKLPEVFGGGGGGLSFRV--KTEGELDEALKDALF--NRDKLSLIEVILPK 175 (183)
T ss_pred ccCCCCCHHHHHHHhCCCccccEEEe--cCHHHHHHHHHHHHh--cCCCcEEEEEEcCc
Confidence 11235676665 22 567777 479999999999886 13899999999854
No 64
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.48 E-value=2.2e-13 Score=124.63 Aligned_cols=111 Identities=23% Similarity=0.294 Sum_probs=83.6
Q ss_pred cCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCC-CCeEEEEEcC-Cccccccccccc-cCc
Q 016175 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-LPAILVCENN-HYGMGTAEWRAA-KSP 245 (394)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~-LpvI~vv~NN-~~~i~~~~~~~~-~~~ 245 (394)
.|+||+++|.|+|+++|. ++.|||+.|||+++++. .+|.+|+.++ +|+++||.|| +|++...+.... ..+
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 799999999999999985 56899999999988653 4588999999 5987777666 488643221111 245
Q ss_pred chhhhc-Cc-ccEEE-EeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 246 SYYKRG-DY-VPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 246 ~~~~~g-~~-~~~~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
+|.+.+ ++ +++.+ |+ ++.++.++++ +++ .++|++||+.+-+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~---~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA---MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc---CCCCEEEEEEeCC
Confidence 788776 45 87777 64 6888888885 553 2899999999853
No 65
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.46 E-value=3.1e-13 Score=142.94 Aligned_cols=116 Identities=26% Similarity=0.385 Sum_probs=93.1
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccccccc--
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAK-- 243 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~~~~-- 243 (394)
++.|+||.++|.|+|+++|. +++.|||+.|||++++. ..| |.+|.++++|+++||.||+ |++.........
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~-~qE-L~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN-GQE-LETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc-HHH-HHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 57899999999999999987 68899999999998874 444 9999999999887777775 887543221111
Q ss_pred -------Ccc-hhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeec
Q 016175 244 -------SPS-YYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (394)
Q Consensus 244 -------~~~-~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (394)
.+. |.+.+ +| +++++|+ +.+++.+++++|++. ++|+|||+.+-+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~~---~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALAS---DGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecCc
Confidence 112 77777 56 9999998 799999999998875 9999999998764
No 66
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.45 E-value=3.4e-13 Score=143.49 Aligned_cols=118 Identities=23% Similarity=0.250 Sum_probs=94.2
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccc-------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE------- 238 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~------- 238 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++++...+++++|+++++|+++||.|| +|++....
T Consensus 427 ~~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~ 502 (569)
T PRK08327 427 GSAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPE 502 (569)
T ss_pred CCCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcc
Confidence 35699999999999999885 6789999999999988754457999999999987777777 68864210
Q ss_pred ----------cccc-cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEe
Q 016175 239 ----------WRAA-KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (394)
Q Consensus 239 ----------~~~~-~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (394)
.... ..++|.+.+ ++ +++.+|+ +..++..++++|++.+++ +||+|||+.+
T Consensus 503 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 503 GYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred cccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0011 345788877 55 8889997 799999999999987776 7899999986
No 67
>PRK06154 hypothetical protein; Provisional
Probab=99.45 E-value=4e-13 Score=142.82 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=91.9
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc-----c-
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----R- 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~-----~- 240 (394)
..|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.||+ |++..... .
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~ 502 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT-GMD-FETAVRERIPILTILLNNFSMGGYDKVMPVSTTKY 502 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECCccceeehhhhhhcCcc
Confidence 5699999999999999986 67899999999998874 344 9999999999877776664 88532211 0
Q ss_pred --cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 --AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 --~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
....+||.+.+ +| +++++|+ ++.++..++++|++..+.++|+|||+.+.+
T Consensus 503 ~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~~~~p~lIev~v~~ 556 (565)
T PRK06154 503 RATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVKEGTPALLEVITSE 556 (565)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhccCCCeEEEEEEeCh
Confidence 01135888887 55 8999997 688999999999875444889999999843
No 68
>PRK12474 hypothetical protein; Provisional
Probab=99.45 E-value=4.7e-13 Score=140.81 Aligned_cols=113 Identities=23% Similarity=0.257 Sum_probs=87.5
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc-c-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-W----- 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~-~----- 239 (394)
...|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.||+ |++.... .
T Consensus 386 ~~~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~-~qE-L~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~ 459 (518)
T PRK12474 386 LTGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT-MQA-LWTMARENLDVTVVIFANRSYAILNGELQRVGAQ 459 (518)
T ss_pred cCCCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch-HHH-HHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCC
Confidence 34599999999999999996 67899999999999874 455 9999999999876666664 9864211 0
Q ss_pred ---c--------cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 240 ---R--------AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 240 ---~--------~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
. ..+..||.+.+ +| +++.+|+ ++.++.+++++|++. ++|+|||+.+
T Consensus 460 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~~---~~p~liev~~ 518 (518)
T PRK12474 460 GAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMAQ---RGPRLIEAMI 518 (518)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHcC---CCCEEEEEEC
Confidence 0 01124788877 55 8899997 588999988888753 8999999974
No 69
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.44 E-value=6.3e-13 Score=140.16 Aligned_cols=113 Identities=28% Similarity=0.353 Sum_probs=87.7
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~------ 239 (394)
...|+||+++|.|+|+++|. +++.|+|++|||+++++. ++|++|.+++||+++||.||+ |++.....
T Consensus 404 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~ 477 (530)
T PRK07092 404 MASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVR 477 (530)
T ss_pred cCCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCC
Confidence 34699999999999999986 568999999999999863 679999999999887887776 88632211
Q ss_pred ----ccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 240 ----RAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 240 ----~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
......+|.+.+ .+ +++++|+ +..++.+++++|.+. ++|+|||+.+
T Consensus 478 ~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~~ 529 (530)
T PRK07092 478 DVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALAA---DGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEc
Confidence 111345777776 45 8889997 477887777776642 8999999986
No 70
>PRK08266 hypothetical protein; Provisional
Probab=99.44 E-value=6e-13 Score=140.61 Aligned_cols=118 Identities=24% Similarity=0.383 Sum_probs=91.8
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccccc------
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~~------ 240 (394)
..|+||+++|.|+|++++. +++.|||++|||+++++ .++|.+|.+++||+++||.|| +|++......
T Consensus 400 ~~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~ 473 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGR 473 (542)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCC
Confidence 4699999999999999885 67889999999999986 366999999999987766666 6886432110
Q ss_pred c----ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCCC
Q 016175 241 A----AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (394)
Q Consensus 241 ~----~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GH 296 (394)
. ...++|...+ +| +++++|+. +.++.+++++|.+. ++|+|||+.|+|...+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~al~~a~~~---~~p~liev~i~~~~~~ 530 (542)
T PRK08266 474 VVASDLVNPDFVKLAESFGVAAFRVDS--PEELRAALEAALAH---GGPVLIEVPVPRGSEA 530 (542)
T ss_pred cccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHHhC---CCcEEEEEEecCCCCc
Confidence 0 1235788877 55 88899974 77888888887643 8999999999887554
No 71
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.44 E-value=4.4e-13 Score=142.66 Aligned_cols=115 Identities=27% Similarity=0.421 Sum_probs=90.1
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~------ 239 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++.. +.| |.+|.+++||+++||.||+ |++.....
T Consensus 419 ~~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~ 492 (570)
T PRK06725 419 GGLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYEN 492 (570)
T ss_pred CCcccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCC
Confidence 35699999999999999985 67899999999999754 566 9999999999887777775 77532111
Q ss_pred ----ccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 ----RAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ----~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.....++|.+.+ ++ +++.+|+ ++.++.++++.|++. +||+|||+.+-+
T Consensus 493 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~id~ 546 (570)
T PRK06725 493 RLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFAH---EGPVVVDFCVEE 546 (570)
T ss_pred ccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 011246788887 55 9999995 788988888887753 899999999853
No 72
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.43 E-value=3.8e-13 Score=122.18 Aligned_cols=111 Identities=23% Similarity=0.230 Sum_probs=84.2
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc-------
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------- 239 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~------- 239 (394)
+.|.||+++|.|+|+++|. ++.|||++|||++... .. +|.+|+++++|+++||.|| +|++-....
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~-~~-eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~ 121 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-LN-GLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDE 121 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh-HH-HHHhccccCCCeEEEEEECCCCchheeccCCcccch
Confidence 4588999999999999985 5779999999998874 34 4888999999986666555 588532111
Q ss_pred --ccc---cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 240 --RAA---KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 240 --~~~---~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
... ..++|.+.+ ++ +++++|+ ++.++..++++|++. ++|++||+.+
T Consensus 122 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~v 174 (175)
T cd02009 122 FERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALAQ---DGPHVIEVKT 174 (175)
T ss_pred hhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 011 145788777 55 8889986 688998888888753 8999999975
No 73
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.42 E-value=8.2e-13 Score=140.78 Aligned_cols=115 Identities=27% Similarity=0.346 Sum_probs=90.3
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc------c
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~------~ 239 (394)
+..|+||+++|.|+|+++|. +++.|||++|||+++.+ ..| |.+|++++||+++||.||+ |++.... .
T Consensus 405 ~~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~ 478 (578)
T PRK06546 405 FRHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLP 478 (578)
T ss_pred CCcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCccccHHHHHHhcCCC
Confidence 35699999999999999986 57899999999999874 455 8999999999877777665 7863210 0
Q ss_pred ---ccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 ---RAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ---~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.....+||.+.+ ++ +++.+|+ ++.++.+++++|++. +||+|||+.+-+
T Consensus 479 ~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIev~~~~ 531 (578)
T PRK06546 479 DFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFAH---PGPALVDVVTDP 531 (578)
T ss_pred cccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 112345888877 55 8889997 799999999988753 899999999843
No 74
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.42 E-value=5e-13 Score=142.73 Aligned_cols=117 Identities=25% Similarity=0.233 Sum_probs=90.7
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccccc-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~~----- 240 (394)
++.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|.+++||+++||.|| +|++......
T Consensus 415 ~~~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~ 488 (588)
T TIGR01504 415 GQAGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-IEE-LAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMD 488 (588)
T ss_pred CccccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccc
Confidence 35699999999999999996 67899999999998875 444 999999999986666655 5886321100
Q ss_pred -----cc----------cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEee
Q 016175 241 -----AA----------KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (394)
Q Consensus 241 -----~~----------~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (394)
.. ..+||.+.+ ++ +.+.+|+ ++.++.+++++|++.+++ ++|+|||+.+-
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~ 555 (588)
T TIGR01504 489 YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILE 555 (588)
T ss_pred ccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 00 135788877 55 8899995 688999999999875433 89999999984
No 75
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.41 E-value=6.4e-13 Score=141.83 Aligned_cols=120 Identities=21% Similarity=0.215 Sum_probs=92.4
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccccc------
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~~------ 240 (394)
+.|+||+++|.|+|+++|. +++.||+++|||+++.+ ..| |.+|+++++|+++||.|| +|++......
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 5699999999999999986 57899999999999886 566 889999999986666555 6886321100
Q ss_pred ----cc-cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCC
Q 016175 241 ----AA-KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (394)
Q Consensus 241 ----~~-~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (394)
.. ..++|.+.+ ++ +++++|+ ++.++..+++++++..+.++|+|||+.+-+-.|
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQNEGKTTVIEIMCNQELG 566 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCCCcEEEEEEeccccC
Confidence 01 235888887 45 8899996 688999999998875323689999999965543
No 76
>PRK07586 hypothetical protein; Validated
Probab=99.41 E-value=1.4e-12 Score=136.95 Aligned_cols=112 Identities=27% Similarity=0.303 Sum_probs=85.8
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccc-----c--
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-----W-- 239 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~-----~-- 239 (394)
..|+||+++|.|+|+++|. +++.|||++|||+++.. . .+|.+|.+++||+++||.|| +|++.... .
T Consensus 383 ~~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~-~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 456 (514)
T PRK07586 383 TGGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT-I-QALWTQARENLDVTTVIFANRAYAILRGELARVGAGN 456 (514)
T ss_pred CCcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH-H-HHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCC
Confidence 3499999999999999996 67899999999998874 4 45999999999976666555 59863210 0
Q ss_pred ---------c-cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 240 ---------R-AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 240 ---------~-~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
. ....+||.+.+ +| +++++|+ ++.++.+++++|++. ++|+|||+.+
T Consensus 457 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~~---~~p~liev~~ 514 (514)
T PRK07586 457 PGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALAE---PGPHLIEAVV 514 (514)
T ss_pred CCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHcC---CCCEEEEEEC
Confidence 0 01235788877 55 8899996 588988888888753 8999999974
No 77
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.40 E-value=8.3e-13 Score=140.58 Aligned_cols=118 Identities=21% Similarity=0.369 Sum_probs=91.9
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc-------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~------- 238 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++.. .. .|.+|.+++||+++||.||+ |++....
T Consensus 418 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~-eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~ 491 (574)
T PRK07979 418 GGLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN-IQ-ELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSG 491 (574)
T ss_pred CCccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HH-HHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCC
Confidence 45699999999999999996 57789999999998874 34 49999999999877776664 8863211
Q ss_pred --ccc--ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 239 --WRA--AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 239 --~~~--~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
... ...+||.+.+ ++ +++++|+ ++.++..++++|++.++.++|+|||+.+-+
T Consensus 492 ~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 492 RHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred ccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccCCCCcEEEEEEECC
Confidence 001 1236888887 55 8899995 688999999999875544899999999854
No 78
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.40 E-value=1.9e-12 Score=123.18 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=85.9
Q ss_pred cCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccccc-ccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccc---
Q 016175 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR--- 240 (394)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~-~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~--- 240 (394)
.+..++||+++|.|+|++++. +++.|||+.|||++ +.| +.| |..|+++++|+++||.||+ |++...+..
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a~----p~r~VV~i~GDG~~~~m~-~~e-L~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGRG----KDITVVAFAGDGGTADIG-FQA-LSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhccC----CCCeEEEEEcCchHHhhH-HHH-HHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 345689999999999987664 67899999999995 554 444 9999999999988888776 885211110
Q ss_pred ------------------cccCcchhhhc-Cc-ccEEE-EeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 241 ------------------AAKSPSYYKRG-DY-VPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 241 ------------------~~~~~~~~~~g-~~-~~~~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
....++|.+.+ ++ ++++. ++-.++.++.+++++|++. ++|+|||+.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~---~gP~lIev~~ 199 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSI---EGPAYIHILS 199 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 01224777766 44 76653 4556899999999988864 8999999985
No 79
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.40 E-value=2.5e-12 Score=118.71 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=83.4
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccc-cccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccccc-c---
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR-A--- 241 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~~-~--- 241 (394)
..|.||+++|.|+|+++|. +++.||++.|||+ ++.+ +.| |.+|.++++|+++||.|| .|++...... .
T Consensus 49 ~~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~-~~e-L~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~ 122 (193)
T cd03375 49 FHTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG-GNH-FIHAARRNIDITVIVHNNQIYGLTKGQASPTTPE 122 (193)
T ss_pred hhhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc-HHH-HHHHHHhCCCeEEEEEcCcccccCCCccCCCCCC
Confidence 3589999999999999986 6889999999999 4554 444 889999999987666665 5886432110 0
Q ss_pred ------------ccCcchhhhc-Cc-ccEE-EEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 242 ------------AKSPSYYKRG-DY-VPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 242 ------------~~~~~~~~~g-~~-~~~~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
...++|.+.+ ++ ++++ ++.-.++.++.+++++|++. ++|++||+.+
T Consensus 123 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~~---~gp~vIev~~ 183 (193)
T cd03375 123 GFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQH---KGFSFVEVLS 183 (193)
T ss_pred CCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHhc---CCCEEEEEEC
Confidence 0124677666 44 6664 22335789999999988864 8999999985
No 80
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.39 E-value=1e-12 Score=140.61 Aligned_cols=115 Identities=21% Similarity=0.395 Sum_probs=90.4
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc-------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~------- 238 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|++++||+++||.||+ |++....
T Consensus 427 ~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~ 500 (595)
T PRK09107 427 GGLGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC-IQE-MSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGN 500 (595)
T ss_pred CCchhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCC
Confidence 35699999999999999986 67899999999998874 455 9999999999877777765 8753211
Q ss_pred --ccc--ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 239 --WRA--AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 239 --~~~--~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
... ...+||.+.+ ++ +++++|+ ++.++.+++++|.+. ++|+|||+.+.+
T Consensus 501 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 555 (595)
T PRK09107 501 RLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMIDV---DKPVIFDCRVAN 555 (595)
T ss_pred ccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 001 1235888877 55 8899995 688999999888764 899999999864
No 81
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.39 E-value=1.9e-12 Score=137.81 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=89.3
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~------ 239 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. +.| |.+|++++||+++||.|| +|++.....
T Consensus 405 ~~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~ 478 (574)
T PRK09124 405 FNHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MGD-FLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYL 478 (574)
T ss_pred CCcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HHH-HHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCc
Confidence 46799999999999999986 57899999999998874 555 889999999986666555 588642100
Q ss_pred -c--cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 -R--AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 -~--~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
. ....++|.+.+ +| +++++|+ ++.++.+++++|++. ++|+|||+.+-+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~i~~ 531 (574)
T PRK09124 479 TDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFAH---DGPALVDVVTAK 531 (574)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 0 11235788887 56 8899996 688999999888753 899999999854
No 82
>PRK05858 hypothetical protein; Provisional
Probab=99.39 E-value=1.4e-12 Score=137.95 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=89.4
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccc-cc-----
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-WR----- 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~-~~----- 240 (394)
+.|+||+++|.|+|+++|. +++.|||++|||+++.. +.| |.+|++++||+++||.|| .|++.... ..
T Consensus 405 ~~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 478 (542)
T PRK05858 405 PFGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS-LMD-VDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYD 478 (542)
T ss_pred CccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc-HHH-HHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCc
Confidence 4689999999999999986 67899999999998874 555 999999999986666655 58863311 10
Q ss_pred ----cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 ----AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 ----~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
....+||.+.+ +| +.+.+|+ +++++.+++++|++. ++|+|||+.|-+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~~~~ 531 (542)
T PRK05858 479 VAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFAS---GVPYLVNVLTDP 531 (542)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCcEEEEEEECC
Confidence 11346888877 55 8889996 688999999888753 899999999843
No 83
>PRK07064 hypothetical protein; Provisional
Probab=99.38 E-value=2.2e-12 Score=136.34 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=88.6
Q ss_pred ccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc----
Q 016175 165 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW---- 239 (394)
Q Consensus 165 ~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~---- 239 (394)
+..+.|+||+++|.|+|+++|. +++.|||++|||+++.. .. +|.+|.+++||+++||.|| +|++.....
T Consensus 400 ~~~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~ 473 (544)
T PRK07064 400 VHALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN-LG-ELATAVQENANMVIVLMNDGGYGVIRNIQDAQY 473 (544)
T ss_pred eccCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh-HH-HHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhc
Confidence 4444589999999999999985 57899999999998874 34 4999999999976665555 588642111
Q ss_pred ------ccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEee
Q 016175 240 ------RAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (394)
Q Consensus 240 ------~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (394)
.....++|.+.+ +| +++.+|+ ++.++..++++|++. ++|+|||+.+.
T Consensus 474 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIeV~~~ 528 (544)
T PRK07064 474 GGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALAK---EGPVLVEVDML 528 (544)
T ss_pred CCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHcC---CCCEEEEEEcc
Confidence 011245788877 55 8888996 588999999888753 89999999986
No 84
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.38 E-value=2.3e-12 Score=137.24 Aligned_cols=114 Identities=23% Similarity=0.306 Sum_probs=88.1
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccc------
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~------ 240 (394)
+.|+||+++|.|+|+++|. +++.|||++|||++++ ..+.|++|+++++|+++||.||+ |++......
T Consensus 435 g~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~ 508 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTH 508 (578)
T ss_pred CccccccHHHHHHHHHhhC----CCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCc
Confidence 4589999999999999885 5789999999999975 45669999999999887777775 665321111
Q ss_pred ----cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 ----AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 ----~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.....+|.+.+ ++ +++++|+ ++.++.+++++|.+. +||+|||+.+-+
T Consensus 509 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIev~~~~ 561 (578)
T PRK06112 509 TDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMAA---PGPTLIEVITDP 561 (578)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEcCc
Confidence 01235788777 55 8899997 578888888887653 899999999844
No 85
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.38 E-value=2.5e-12 Score=135.89 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=88.8
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEc-CCccccccc-----cc
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN-NHYGMGTAE-----WR 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~N-N~~~i~~~~-----~~ 240 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|++++||+++||.| ++|++.... .+
T Consensus 405 ~~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~ 478 (539)
T TIGR02418 405 NGMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS-SME-LETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQR 478 (539)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45689999999999999986 57789999999999874 455 88999999997655555 568864211 11
Q ss_pred ----cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 ----AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 ----~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
....+||.+.+ ++ +++.+|+ ++.++.+++++|++. ++|+|||+.+.+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~p~lIev~v~~ 531 (539)
T TIGR02418 479 SSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAMEV---EGPVVVDIPVDY 531 (539)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 11245788877 55 8889996 588999999888753 899999999854
No 86
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.37 E-value=1.6e-12 Score=138.93 Aligned_cols=118 Identities=25% Similarity=0.238 Sum_probs=91.6
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc-----c
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----R 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~-----~ 240 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|.+++||+++||.||+ |++..... .
T Consensus 416 ~~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~ 489 (591)
T PRK11269 416 GQAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL-IEE-LAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMD 489 (591)
T ss_pred CccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC-HHH-HHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccC
Confidence 45799999999999999986 57899999999998874 455 9999999999877777665 87532110 0
Q ss_pred ---c--c----------cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeee
Q 016175 241 ---A--A----------KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (394)
Q Consensus 241 ---~--~----------~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (394)
. . ..++|.+.+ ++ +++.+|. +++++.+|+++|++.+.+ +||+|||+.+-+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 490 YCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred ccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 0 125788877 55 8888984 789999999999875444 899999999853
No 87
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.37 E-value=2.1e-12 Score=137.82 Aligned_cols=114 Identities=25% Similarity=0.451 Sum_probs=88.3
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc------c
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~------~ 239 (394)
++.|+||+++|.|+|+++|. +++.|||+.|||+++.. ..| |.+|++++||+++||.||+ |++.... .
T Consensus 427 ~~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~ 500 (585)
T CHL00099 427 AGLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN-LQE-LGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGE 500 (585)
T ss_pred ccccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45799999999999999996 57889999999998864 444 9999999999877777775 7752211 0
Q ss_pred c------cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEee
Q 016175 240 R------AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (394)
Q Consensus 240 ~------~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (394)
+ ....++|.+.+ ++ +++++|+ +++++.+++++|++. +||+|||+.+-
T Consensus 501 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~v~ 555 (585)
T CHL00099 501 RYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALDY---DGPVLIDCQVI 555 (585)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEEC
Confidence 0 11235788877 55 8889996 588888888887753 89999999984
No 88
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.37 E-value=2e-12 Score=138.76 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=89.9
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccc-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~----- 240 (394)
++.|.||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|++++||+++||.||+ |++......
T Consensus 431 ~~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~ 504 (616)
T PRK07418 431 AGLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN-IQE-LGTLAQYGINVKTVIINNGWQGMVRQWQESFYGE 504 (616)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 35699999999999999986 67889999999998874 455 8999999999877776665 776321110
Q ss_pred -----cc--cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 -----AA--KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 -----~~--~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.. ..+||.+.+ ++ +++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 505 ~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 560 (616)
T PRK07418 505 RYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALAH---DGPVLIDVHVRR 560 (616)
T ss_pred CceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 01 236788887 55 8899996 688999999888753 889999999853
No 89
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.37 E-value=2.1e-12 Score=137.97 Aligned_cols=116 Identities=23% Similarity=0.413 Sum_probs=89.7
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~------ 239 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++.. .. .|.+|.+++||+++||.||+ |++.....
T Consensus 434 ~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~-eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~ 507 (587)
T PRK06965 434 GGLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC-IQ-ELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSK 507 (587)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC-HH-HHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45689999999999999996 57899999999998874 34 49999999999877666665 77532110
Q ss_pred c---cc--cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 R---AA--KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ~---~~--~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
+ .. ..++|.+.+ ++ +++++|+ +..++.+++++|++. .++|+|||+.+-+
T Consensus 508 ~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lieV~i~~ 563 (587)
T PRK06965 508 RYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL--KDRTVFLDFQTDP 563 (587)
T ss_pred CccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEecc
Confidence 1 11 236888887 55 8899995 688999999988863 2789999999853
No 90
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.37 E-value=2.2e-12 Score=136.86 Aligned_cols=115 Identities=26% Similarity=0.455 Sum_probs=89.3
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc------c
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~------~ 239 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.||+ |++.... .
T Consensus 409 ~~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~~e-L~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~ 482 (558)
T TIGR00118 409 GGLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-LQE-LSTAVQYDIPVKILILNNRYLGMVRQWQELFYEE 482 (558)
T ss_pred CccccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCC
Confidence 35689999999999999985 56889999999998874 554 9999999999888887776 6643210 0
Q ss_pred -----ccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 -----RAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 -----~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.....++|.+.+ ++ +++++|+. ++++.+++++|++. ++|+|||+.+.+
T Consensus 483 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~~---~~p~liev~~~~ 537 (558)
T TIGR00118 483 RYSHTHMGSLPDFVKLAEAYGIKGIRIEK--PEELDEKLKEALSS---NEPVLLDVVVDK 537 (558)
T ss_pred ceeeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 111235788887 55 88899975 78888888888754 899999999854
No 91
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.36 E-value=3.1e-12 Score=136.24 Aligned_cols=116 Identities=19% Similarity=0.274 Sum_probs=89.2
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEE-cCCccccccc-----cc-
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAE-----WR- 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~-NN~~~i~~~~-----~~- 240 (394)
..|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.++++++||+++||. ||+|++.... ..
T Consensus 406 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~-~~e-L~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~ 479 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT-MQD-LLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPL 479 (575)
T ss_pred CcchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCc
Confidence 4699999999999999986 67899999999998874 455 9999999999766655 5569863211 00
Q ss_pred ---cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 ---AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 ---~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
....+||.+.+ ++ +++.+|+ +..++.+++++|++ +..++|+|||+.+..
T Consensus 480 ~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~~~~~p~liev~i~~ 533 (575)
T TIGR02720 480 IGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-IKQGKPVLIDAKITG 533 (575)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-hCCCCcEEEEEEeCC
Confidence 11245788877 55 8899996 57899999998885 223899999999854
No 92
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.36 E-value=3e-12 Score=136.42 Aligned_cols=117 Identities=24% Similarity=0.250 Sum_probs=90.6
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccccc------
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~~------ 240 (394)
+.|+||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|++++||+|+||.|| +|++......
T Consensus 428 ~~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~ 501 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS-MNE-IMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNR 501 (579)
T ss_pred ccccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCc
Confidence 4689999999999999986 57889999999998875 455 999999999986666555 5886431110
Q ss_pred ----cccC-cchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 ----AAKS-PSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 ----~~~~-~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.... +||.+.+ ++ +++++|+ +++++..++++|++..+.++|+|||+.+-+
T Consensus 502 ~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~~~~~p~lieV~v~~ 558 (579)
T TIGR03457 502 FVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQAEGKTTVIEIVCTR 558 (579)
T ss_pred ceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhCCCCCcEEEEEEeCC
Confidence 1112 4888887 55 8889985 689999999999875433889999999854
No 93
>PLN02573 pyruvate decarboxylase
Probab=99.35 E-value=2.7e-12 Score=136.85 Aligned_cols=115 Identities=18% Similarity=0.106 Sum_probs=87.6
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc-c---c
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW-R---A 241 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~-~---~ 241 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.|| +|++..... . .
T Consensus 425 ~~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~ 498 (578)
T PLN02573 425 MQYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT-AQD-VSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNV 498 (578)
T ss_pred cchhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceeEEEeecccCccc
Confidence 45799999999999999997 57899999999998874 455 999999999987666655 588643211 0 1
Q ss_pred ccCcchhhhc-Cc------ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 242 AKSPSYYKRG-DY------VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 242 ~~~~~~~~~g-~~------~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
...++|.+.+ +| +++.+|+ +..++.+++++|++.. .++|+|||+.+
T Consensus 499 ~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~~-~~~p~lieV~v 551 (578)
T PLN02573 499 IKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGEK-KDCLCFIEVIV 551 (578)
T ss_pred cCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhhC-CCCcEEEEEEc
Confidence 1235777665 32 6788997 5889999999887521 28899999997
No 94
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.35 E-value=2.5e-12 Score=136.86 Aligned_cols=116 Identities=23% Similarity=0.420 Sum_probs=89.4
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~------ 239 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.+++||+++||.|| +|++.....
T Consensus 418 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~ 491 (572)
T PRK08979 418 GGLGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN-IQE-LSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQG 491 (572)
T ss_pred CCcccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc-HHH-HHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCC
Confidence 35689999999999999996 67889999999998874 445 999999999986666655 588643111
Q ss_pred ---cc-c-cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 ---RA-A-KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ---~~-~-~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.. . ..++|.+.+ ++ +++.+|+ ++.++..++++|++. .++|+|||+.+-+
T Consensus 492 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 547 (572)
T PRK08979 492 RHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM--KDRLVFVDINVDE 547 (572)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 00 1 235788877 55 8889996 688999999988752 2889999999854
No 95
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.35 E-value=2.3e-12 Score=136.23 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=85.9
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEc-CCcccccccc---c--
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN-NHYGMGTAEW---R-- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~N-N~~~i~~~~~---~-- 240 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. .. +|.+|++++||+++||.| ++|++..... .
T Consensus 401 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~-EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~ 474 (539)
T TIGR03393 401 PLWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT-IQ-ELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY 474 (539)
T ss_pred hhhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH-HH-HHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCc
Confidence 45699999999999999986 67899999999998874 44 499999999997655555 5688642111 1
Q ss_pred -cccCcchhhhc-Cc-cc----EEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 241 -AAKSPSYYKRG-DY-VP----GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 241 -~~~~~~~~~~g-~~-~~----~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
....++|.+.+ ++ ++ +++|+ +..++.+++++|++. ++|+|||+.+
T Consensus 475 ~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i 526 (539)
T TIGR03393 475 NDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAAH---ERLSLIEVVL 526 (539)
T ss_pred CcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhcc---CCeEEEEEEc
Confidence 12235777766 44 54 78885 688998888887753 8999999997
No 96
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.35 E-value=3.7e-12 Score=135.58 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=89.5
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~------ 239 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|.+++||+++||.|| +|++.....
T Consensus 420 ~~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~ 493 (574)
T PRK06466 420 GGLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN-IQE-LSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEG 493 (574)
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCC
Confidence 45699999999999999996 57889999999998874 444 999999999986666655 588632110
Q ss_pred ---cc--ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 ---RA--AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ---~~--~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.. ...++|.+.+ +| +++.+|+ ++.++.+++++|++. .++|+|||+.+-+
T Consensus 494 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~--~~~p~lIev~i~~ 549 (574)
T PRK06466 494 RHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM--KDRLVFIDIYVDR 549 (574)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 01 1235788877 55 8899985 688999999988752 2889999999854
No 97
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.35 E-value=3.9e-12 Score=135.12 Aligned_cols=115 Identities=26% Similarity=0.387 Sum_probs=88.9
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~------ 239 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.+++||+|+||.|| +|++.....
T Consensus 411 ~~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~ 484 (563)
T PRK08527 411 GGLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEE 484 (563)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCC
Confidence 35699999999999999986 56789999999999874 566 999999999987777666 477532110
Q ss_pred c-----cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 R-----AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ~-----~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
. ....++|.+.+ ++ +.+++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 485 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lieV~v~~ 539 (563)
T PRK08527 485 RYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALES---DKVALIDVKIDR 539 (563)
T ss_pred ceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEECC
Confidence 0 01135787776 45 8889986 588988888887753 899999999975
No 98
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.35 E-value=4.1e-12 Score=135.89 Aligned_cols=116 Identities=27% Similarity=0.332 Sum_probs=88.8
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHC-----CCCeEEEEEcC-Cccccccc--
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-----DLPAILVCENN-HYGMGTAE-- 238 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~-----~LpvI~vv~NN-~~~i~~~~-- 238 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++....| |.+|+++ +||+++||.|| +|++....
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~ 486 (597)
T PRK08273 412 GTLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQR 486 (597)
T ss_pred CccccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHH
Confidence 45699999999999999996 678899999999997643345 8888888 89987777766 48753211
Q ss_pred ---cc-------cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 239 ---WR-------AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 239 ---~~-------~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.. .....+|.+.+ ++ +++++|+ +++++..++++|++. ++|+|||+.+-+
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIeV~~~~ 547 (597)
T PRK08273 487 VMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALAA---DRPVVLEVKTDP 547 (597)
T ss_pred HhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 00 11235688877 55 8889996 688999999888753 899999999854
No 99
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.35 E-value=4.8e-12 Score=134.26 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=88.6
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccc-cccc----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGT-AEWR---- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~-~~~~---- 240 (394)
...|+||+++|.|+|+++|. +++.|||++|||+++.. ...|.+|+++++|+++||.||+ |++.. ....
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~ 485 (557)
T PRK08199 412 PTSGSMGYGLPAAIAAKLLF----PERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPG 485 (557)
T ss_pred CCCccccchHHHHHHHHHhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCC
Confidence 35799999999999999886 67899999999998863 3569999999999988887776 88532 1111
Q ss_pred -----cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 -----AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 -----~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
....++|.+.+ +| +++.+|+ +++++.++++++++. +||+|||+.+-+
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~li~v~~~~ 539 (557)
T PRK08199 486 RVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALAS---GKPALIEIRIDP 539 (557)
T ss_pred ccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCH
Confidence 11235788776 55 8889997 577888888877642 899999999854
No 100
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.35 E-value=4.5e-12 Score=134.28 Aligned_cols=115 Identities=22% Similarity=0.350 Sum_probs=88.2
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCC-CCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEc-CCcccccccc-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN-NHYGMGTAEW----- 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~N-N~~~i~~~~~----- 239 (394)
++.|+||+++|.|+|+++|. + ++.|||++|||+++.. ..| |.+|+.++||+++||.| ++|++.....
T Consensus 393 ~~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~-~~e-L~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~ 466 (549)
T PRK06457 393 AWLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT-MME-LITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGY 466 (549)
T ss_pred CCcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh-HHH-HHHHHHHCCCeEEEEEECCccchHHHHHHHhcC
Confidence 35799999999999999986 4 6899999999998874 344 89999999997655555 5688632110
Q ss_pred ----ccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 ----RAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ----~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.....+||.+.+ +| +++.+|+ ++.++..++++|++. ++|+|||+.+-+
T Consensus 467 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 520 (549)
T PRK06457 467 PEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLNT---KGPAVLDAIVDP 520 (549)
T ss_pred CcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCc
Confidence 011245788877 55 8889986 688999998888753 899999999853
No 101
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.33 E-value=6.5e-12 Score=133.68 Aligned_cols=116 Identities=24% Similarity=0.428 Sum_probs=89.8
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc-------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~------- 238 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. + ++|.+|.+++||+++||.||+ |++....
T Consensus 418 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~ 491 (574)
T PRK06882 418 GGAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN-I-QELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSG 491 (574)
T ss_pred CCcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCC
Confidence 45799999999999999986 56789999999999875 3 569999999999877777775 7643210
Q ss_pred --c-cc-ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 239 --W-RA-AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 239 --~-~~-~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
. .. ...++|.+.+ +| +++++|+ +..++..++++|++. .++|+|||+.+-+
T Consensus 492 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~liev~i~~ 547 (574)
T PRK06882 492 RHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI--KDKLVFVDVNVDE 547 (574)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEecC
Confidence 0 01 1235788877 55 8899996 578888888888763 2789999999864
No 102
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.33 E-value=4.3e-12 Score=135.02 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=88.9
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccc-c----c
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-W----R 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~-~----~ 240 (394)
++.|+||+++|.|+|+++|. +++.||+++|||+++.. ..| |.+|.+++||+++||.|| +|++.... . .
T Consensus 418 ~~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~ 491 (572)
T PRK06456 418 SGMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT-GTN-LATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGK 491 (572)
T ss_pred CCcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc-hHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCC
Confidence 35699999999999999996 56789999999998875 444 899999999986666665 58864311 1 0
Q ss_pred -----cc-cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 -----AA-KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 -----~~-~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.. ..+||.+.+ ++ +++++|+ ++.++.+++++|.+. ++|+|||+.+-+
T Consensus 492 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~v~~ 546 (572)
T PRK06456 492 RIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIKE---DIPAVIRVPVDK 546 (572)
T ss_pred CcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCc
Confidence 01 235788877 55 8888885 688998888887753 899999999865
No 103
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.33 E-value=1.1e-11 Score=124.84 Aligned_cols=131 Identities=20% Similarity=0.172 Sum_probs=92.0
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCC-CeEEEEEcCC-ccccccccccccCc
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSP 245 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~L-pvI~vv~NN~-~~i~~~~~~~~~~~ 245 (394)
..|+||+++|.|+|+++|. +++.|||+.|||++.+. ..+|.+++.+++ |+++||.||+ |+............
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3699999999999999986 56889999999998652 235888899997 7877777765 66432222222345
Q ss_pred chhhhc-Cc-c-cEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCCCCCCCCCCCCCCchhhh
Q 016175 246 SYYKRG-DY-V-PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312 (394)
Q Consensus 246 ~~~~~g-~~-~-~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~ 312 (394)
+|.+.+ ++ + .+++| ++.+++.+++++|.+. +||+|||+.+-.+.+-....| ..++.|++
T Consensus 293 d~~~iA~a~G~~~~~~v--~~~~eL~~al~~a~~~---~gp~lIeV~v~~g~~~~l~rp---~~~p~e~~ 354 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEV--STLEELETALTAASSA---NGPRLIEVKVRPGSRADLGRP---TTSPPENK 354 (361)
T ss_pred CHHHHHHHCCCceEEEe--CCHHHHHHHHHHHHhC---CCcEEEEEEecCCCccCCCCC---CCCHHHHH
Confidence 777665 33 3 35555 5789999999888643 899999999976654433333 24566554
No 104
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.33 E-value=4.7e-12 Score=120.64 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=84.5
Q ss_pred CcCCccchhhHHHHHHHHh-hhCCCCCeEEEEEcccccc-cchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccc----
Q 016175 168 GHGIVGAQIPLGCGLAFAQ-KYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR---- 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~-k~~~~~~~vv~l~GDGa~~-eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~---- 240 (394)
+.|.||+++|.|+|+++|. +...+++.|||+.|||++. .| +.| +..+..+++|+++||.||+ |++...+..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 4599999999999999881 1112678999999999864 34 455 5566789999877777665 785421111
Q ss_pred ------------cccCcchhhhc-Cc-ccEEE---EeCCCHHHHHHHHHHHHH-HHhhCCCEEEEEEe
Q 016175 241 ------------AAKSPSYYKRG-DY-VPGLK---VDGMDALAVKQACKFAKE-HALKNGPMILEMDT 290 (394)
Q Consensus 241 ------------~~~~~~~~~~g-~~-~~~~~---VDG~D~~av~~a~~~A~~-~ar~~gP~lIe~~t 290 (394)
....+||.+.+ ++ +++++ |+ ++.++..|+++|++ . +||+||++.+
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~~~---~GP~lI~v~i 202 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAISRT---DGPTFIHAYT 202 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHhcC---CCCEEEEEeC
Confidence 11235788877 55 77775 54 58899999999986 4 8999999996
No 105
>PRK08617 acetolactate synthase; Reviewed
Probab=99.33 E-value=6.2e-12 Score=133.24 Aligned_cols=115 Identities=20% Similarity=0.321 Sum_probs=88.2
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc-----c
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW-----R 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~-----~ 240 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.|| .|++..... +
T Consensus 411 ~~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~ 484 (552)
T PRK08617 411 NGMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS-AME-LETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGR 484 (552)
T ss_pred CccccccccccHHHhhHhhc----CCCcEEEEEechHHhhh-HHH-HHHHHHhCCCeEEEEEECCccchHHHHHHhhcCC
Confidence 35689999999999999986 67899999999998874 455 899999999987666555 588632111 0
Q ss_pred ----cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 ----AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 ----~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
....++|.+.+ ++ +++.+|. ++.++.+++++|++. ++|+|||+.+.+
T Consensus 485 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~liev~~~~ 537 (552)
T PRK08617 485 SSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALAT---DGPVVIDIPVDY 537 (552)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCcEEEEEEecc
Confidence 11235788777 45 8888885 688998888887743 899999999854
No 106
>PLN02470 acetolactate synthase
Probab=99.33 E-value=6.4e-12 Score=134.13 Aligned_cols=115 Identities=24% Similarity=0.376 Sum_probs=88.4
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccc-------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE------- 238 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~------- 238 (394)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.+++||+++||.|| +|++....
T Consensus 423 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~ 496 (585)
T PLN02470 423 GGLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN-IQE-LATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKA 496 (585)
T ss_pred CccccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCC
Confidence 35699999999999999986 67889999999998875 344 999999999986666655 58753210
Q ss_pred --c-cccc--------Ccchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 239 --W-RAAK--------SPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 239 --~-~~~~--------~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
. .... .++|.+.+ ++ +++.+|+ ++.++.+++++|++. ++|+|||+.+-+
T Consensus 497 ~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lieV~i~~ 558 (585)
T PLN02470 497 NRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLDT---PGPYLLDVIVPH 558 (585)
T ss_pred ceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 0 0001 15788877 55 8889995 688999999888753 899999999853
No 107
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.32 E-value=8e-12 Score=133.01 Aligned_cols=115 Identities=28% Similarity=0.474 Sum_probs=88.4
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccc-----cc
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-----WR 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~-----~~ 240 (394)
++.|+||+++|.|+|+++|. +++.||+++|||+++.. +.| |.+|.++++|+++||.|| +|++.... ..
T Consensus 421 ~~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~ 494 (571)
T PRK07710 421 GGLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQ 494 (571)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCC
Confidence 45699999999999999986 57899999999999873 566 999999999986666655 58863211 00
Q ss_pred ------cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 ------AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 ------~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
....++|.+.+ +| +++.+|+ +..++..++++|.+. ++|+|||+.+.+
T Consensus 495 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lieV~vd~ 549 (571)
T PRK07710 495 RYSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIEL---QEPVVIDCRVLQ 549 (571)
T ss_pred cceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 11235788887 55 8899996 477888888777653 899999999964
No 108
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.32 E-value=8.6e-12 Score=132.53 Aligned_cols=115 Identities=21% Similarity=0.330 Sum_probs=90.0
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~------ 239 (394)
++.|+||+++|.|+|+++|. +++.|||+.|||++++. +.| |.+|.++++|+|+||.||+ |++.....
T Consensus 416 ~~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~ 489 (564)
T PRK08155 416 GGLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQ 489 (564)
T ss_pred CCcccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCC
Confidence 35689999999999999996 57789999999999884 677 8899999999877777775 88743211
Q ss_pred c----cc-cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 R----AA-KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ~----~~-~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
+ .. ...+|.+.+ ++ +++++|+ +++++.+++++|++. ++|+|||+.+-+
T Consensus 490 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~~~~ 544 (564)
T PRK08155 490 RVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAINR---PGPALIHVRIDA 544 (564)
T ss_pred CeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 0 11 235788877 55 8888887 578888888887753 899999999843
No 109
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.32 E-value=7.8e-12 Score=132.83 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=88.1
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccc------cc
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE------WR 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~------~~ 240 (394)
+.|+||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|.+++||+++||.|| +|++.... ..
T Consensus 412 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~ 485 (561)
T PRK06048 412 GLGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN-SQE-LATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKR 485 (561)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc-HHH-HHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCc
Confidence 4589999999999999986 57889999999998875 455 999999999986666655 58753211 01
Q ss_pred ---c--ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 ---A--AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 ---~--~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
. ...+||.+.+ ++ +++++|+ ++.++.+++++|++. ++|+|||+.+-+
T Consensus 486 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~~---~~p~liev~~~~ 539 (561)
T PRK06048 486 YSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVAS---DRPVVIDFIVEC 539 (561)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 1 1245788877 55 8889986 588998999888753 899999999854
No 110
>PRK08611 pyruvate oxidase; Provisional
Probab=99.32 E-value=6.4e-12 Score=133.91 Aligned_cols=114 Identities=20% Similarity=0.252 Sum_probs=87.9
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEc-CCccccccc----c---
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN-NHYGMGTAE----W--- 239 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~N-N~~~i~~~~----~--- 239 (394)
+.|.||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|++++||+|+||.| ++|++.... .
T Consensus 406 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~ 479 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV-MQD-FVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELE 479 (576)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh-HHH-HHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 4699999999999999986 67889999999998874 444 88999999997655555 468863211 0
Q ss_pred --ccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 --RAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 --~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
.....+||.+.+ +| +++++|+ +++++.+++++|.+. ++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIeV~vd~ 531 (576)
T PRK08611 480 YAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALAQ---DKPVIIDVYVDP 531 (576)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 111235788887 55 8889985 688998888887753 899999999964
No 111
>PRK08322 acetolactate synthase; Reviewed
Probab=99.32 E-value=7.8e-12 Score=132.22 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=88.1
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEE-cCCccccccc-----c-
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAE-----W- 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~-NN~~~i~~~~-----~- 239 (394)
++.|.||+++|.|+|+++|. +++.||+++|||+++.. ..| |.+|.++++|+++||. |++|++.... .
T Consensus 403 ~~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~ 476 (547)
T PRK08322 403 NALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN-SQE-LETAVRLGLPLVVLILNDNAYGMIRWKQENMGFE 476 (547)
T ss_pred CCcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc-HHH-HHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCC
Confidence 35689999999999999986 67889999999998864 444 8899999999765555 5568864211 0
Q ss_pred c---cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 R---AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ~---~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
. ....+||.+.+ +| +++++|+ +++++.++++++.+. ++|+|||+.+.+
T Consensus 477 ~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~v~~ 529 (547)
T PRK08322 477 DFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALAQ---PGVHVIDCPVDY 529 (547)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 1 11246888877 55 8889995 688999998888753 899999999843
No 112
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.30 E-value=1.2e-11 Score=130.97 Aligned_cols=115 Identities=23% Similarity=0.350 Sum_probs=88.5
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccc-----c-
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-----W- 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~-----~- 239 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|+++++|+++||.|| +|++.... .
T Consensus 398 ~~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~-~~e-L~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~ 471 (548)
T PRK08978 398 SGLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN-VQE-LGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDE 471 (548)
T ss_pred CchhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCC
Confidence 35699999999999999986 57899999999998874 455 999999999976555554 68853211 0
Q ss_pred cc----c-cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 RA----A-KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ~~----~-~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
+. . ..+||.+.+ +| +++.+|+ ++.++.+++++|++. ++|+|||+.+-+
T Consensus 472 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~id~ 526 (548)
T PRK08978 472 RYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLNS---EGPYLLHVSIDE 526 (548)
T ss_pred cceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 10 1 235788877 55 8899995 688998988888753 899999999865
No 113
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.29 E-value=1.6e-11 Score=119.42 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=80.9
Q ss_pred cCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccc-------
Q 016175 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------- 240 (394)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~------- 240 (394)
.+++|.++|.|+|+++|. +++.||++.|||++..-...| +..|+++++|+++||.||+ |++...+..
T Consensus 67 ~~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g~~e-l~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~ 141 (277)
T PRK09628 67 HTTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIGGNH-TIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGM 141 (277)
T ss_pred eeccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhhHHH-HHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCc
Confidence 358899999999999996 688999999999975312333 5568999999877776665 887431110
Q ss_pred ------c---ccCcchhhhc-Cc-ccEE---EEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 241 ------A---AKSPSYYKRG-DY-VPGL---KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 241 ------~---~~~~~~~~~g-~~-~~~~---~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
. ....+|.+.+ ++ ++++ +| .++.++.+++++|++. +||+|||+.+
T Consensus 142 ~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v--~~~~el~~al~~Al~~---~Gp~lIeV~~ 200 (277)
T PRK09628 142 WTVTAQYGNIDPTFDACKLATAAGASFVARESV--IDPQKLEKLLVKGFSH---KGFSFFDVFS 200 (277)
T ss_pred eeeeccCCCcCCCCCHHHHHHHCCCceEEEEcc--CCHHHHHHHHHHHHhC---CCCEEEEEcC
Confidence 0 0122557665 44 6653 55 4788999999998865 9999999985
No 114
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.29 E-value=4.2e-11 Score=117.70 Aligned_cols=113 Identities=18% Similarity=0.169 Sum_probs=82.4
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccccc-ccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc------
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~-~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~------ 239 (394)
..|.+|.++|+|+|+++|. ++..|||+.|||++ +.| .. .|..|+++++|+++||.||+ |++...+.
T Consensus 68 ~~g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg-~~-eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~ 141 (301)
T PRK05778 68 LHTLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG-GG-HFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPE 141 (301)
T ss_pred cchhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc-HH-HHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCC
Confidence 3478999999999999986 67899999999996 455 33 38889999999877776665 88643211
Q ss_pred -cc---------ccCcchhhhc-Cc-ccEE-EEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 240 -RA---------AKSPSYYKRG-DY-VPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 240 -~~---------~~~~~~~~~g-~~-~~~~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
.. ....+|...+ ++ ++++ ++.-.++.++.+++++|+++ +||+|||+.
T Consensus 142 g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~~---~GpalIeV~ 201 (301)
T PRK05778 142 GSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAISH---KGFAFIDVL 201 (301)
T ss_pred CcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHhC---CCCEEEEEc
Confidence 00 0124676665 33 5554 33445799999999998864 999999986
No 115
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.28 E-value=2.6e-11 Score=128.61 Aligned_cols=113 Identities=21% Similarity=0.212 Sum_probs=87.0
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccc--c--c---
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGT--A--E--- 238 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~--~--~--- 238 (394)
++.|+||+++|.|+|+++|. ++.||++.|||++++. ..| |.+|++++||+++||.||+ |.... . .
T Consensus 414 ~~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~-~~E-L~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~ 486 (554)
T TIGR03254 414 GTWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADP 486 (554)
T ss_pred CCCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhccc-HHH-HHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCC
Confidence 35699999999999999973 5789999999998874 455 9999999999888887775 52110 0 0
Q ss_pred -ccc-ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEee
Q 016175 239 -WRA-AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (394)
Q Consensus 239 -~~~-~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (394)
... ...++|.+.+ ++ +++++|+ ++.++..++++|++. ++|+|||+.+-
T Consensus 487 ~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~id 538 (554)
T TIGR03254 487 APTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALAS---GKPTLINAVID 538 (554)
T ss_pred CccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEEC
Confidence 001 1345788877 55 8889995 688999999888753 89999999984
No 116
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.26 E-value=2.2e-11 Score=130.07 Aligned_cols=114 Identities=26% Similarity=0.374 Sum_probs=87.1
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc------c
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------R 240 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~------~ 240 (394)
+.|+||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|++++||+++||.|| +|++..... .
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~ 490 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-SQE-LATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKR 490 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCC
Confidence 4689999999999999985 56789999999998875 444 999999999987666655 588632110 0
Q ss_pred ---c-c-cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 241 ---A-A-KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 241 ---~-~-~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
. . ...+|.+.+ ++ +++++|+ +++++..++++|++. ++|+|||+.+-+
T Consensus 491 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 544 (586)
T PRK06276 491 QSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIKS---GEPYLLDIIIDP 544 (586)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecc
Confidence 1 1 235787776 44 7888885 688999999888753 899999999843
No 117
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.26 E-value=2.7e-11 Score=128.92 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=87.1
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccc----c--c
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTA----E--W 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~----~--~ 239 (394)
++.|+||+++|.|+|+++|. ++.|||++|||+++.. ..| |.+|+++++|+++||.||+ |-.... . .
T Consensus 421 ~~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~ 493 (569)
T PRK09259 421 GTWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGD 493 (569)
T ss_pred CCCccccccHHHHHHHHhcC-----CCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCC
Confidence 45699999999999999983 6789999999998874 455 9999999999988888776 411110 0 0
Q ss_pred ---cc-ccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEee
Q 016175 240 ---RA-AKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (394)
Q Consensus 240 ---~~-~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (394)
.. ...++|.+.+ ++ +++++|+ ++.++.+++++|++. ++|+|||+.+-
T Consensus 494 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~id 546 (569)
T PRK09259 494 PSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIAS---GKPTLINVVID 546 (569)
T ss_pred ccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEEC
Confidence 00 1246888887 55 8899996 688999999988753 89999999984
No 118
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.25 E-value=2.3e-11 Score=128.62 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=85.2
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccccc-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~~----- 240 (394)
+..|+||+++|.|+|+++|. + +.+|+++|||++++. ..| |.+|.+++||+++||.|| +|++......
T Consensus 400 ~~~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~ 472 (535)
T TIGR03394 400 GYYAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQMT-GWE-LGNCRRLGIDPIVILFNNASWEMLRVFQPESAFN 472 (535)
T ss_pred CccchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHhH-HHH-HHHHHHcCCCcEEEEEECCccceeehhccCCCcc
Confidence 35699999999999999995 2 456889999999874 455 999999999976666555 5886432211
Q ss_pred cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 241 AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 241 ~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
.....||.+.+ ++ +++++|+ +..++..++++|++. .++|++||+.+
T Consensus 473 ~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i 520 (535)
T TIGR03394 473 DLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT--RGRFQLIEAML 520 (535)
T ss_pred cCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc--CCCeEEEEEEC
Confidence 12245788776 55 8889996 588999999888752 25589999997
No 119
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.25 E-value=1.8e-11 Score=130.17 Aligned_cols=114 Identities=26% Similarity=0.398 Sum_probs=85.7
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~------ 239 (394)
++.|+||+++|.|+|+++|. +++.|||++|||+++.. ..| |.+|.++++|+++||.|| +|++.....
T Consensus 415 ~~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~ 488 (566)
T PRK07282 415 GGLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT-NQE-LAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEG 488 (566)
T ss_pred CccccccchhhHhheeheec----CCCcEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCC
Confidence 35699999999999999986 67889999999998874 445 999999999976666555 588632110
Q ss_pred ----ccc-cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 ----RAA-KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ----~~~-~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
... ..++|.+.+ ++ +.+.+|+ ++.++.++++ +.. .++|+|||+.+-+
T Consensus 489 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~---~~~p~lIeV~v~~ 542 (566)
T PRK07282 489 RTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT---EDVPMLIEVDISR 542 (566)
T ss_pred CcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc---CCCCEEEEEEeCC
Confidence 111 245788877 55 8888886 5778887775 332 3899999999854
No 120
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.25 E-value=1.9e-11 Score=131.27 Aligned_cols=116 Identities=22% Similarity=0.388 Sum_probs=88.5
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccc-----c-
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-----W- 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~-----~- 239 (394)
++.|+||+++|.|+|+++|. +++.|+|++|||+++.. . .+|.+|++++||+++||.|| +|++.... .
T Consensus 444 ~~~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~-~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~ 517 (612)
T PRK07789 444 GGLGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT-N-QELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEE 517 (612)
T ss_pred CCcccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc-H-HHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCC
Confidence 35689999999999999986 57889999999998874 3 44999999999976555555 58853211 0
Q ss_pred c----c--c---cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 240 R----A--A---KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 240 ~----~--~---~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
. . . ..+||.+.+ ++ +++++|+ +..++..++++|++. .++|+|||+.+-+
T Consensus 518 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 577 (612)
T PRK07789 518 RYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI--NDRPVVIDFVVGK 577 (612)
T ss_pred CcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEECC
Confidence 0 0 0 125788887 55 8899995 688999999998863 2789999999854
No 121
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.22 E-value=8.5e-11 Score=114.36 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=84.2
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~------ 239 (394)
+..+.+|.++|.|+|+++|. +++.||++.|||++..--+.| |..|+++++|+++||.||+ |++...+.
T Consensus 57 ~~~~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~iG~~e-L~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~ 131 (280)
T PRK11869 57 GFHTLHGRAIPAATAVKATN----PELTVIAEGGDGDMYAEGGNH-LIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLK 131 (280)
T ss_pred CCCcccccHHHHHHHHHHHC----CCCcEEEEECchHHhhCcHHH-HHHHHHhCcCcEEEEEECHHHhhhcceecCCCCC
Confidence 34566999999999999885 678999999999965311344 8899999999887777765 88632111
Q ss_pred --c--------cccCcchhhhc-Cc-ccEEE-EeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 240 --R--------AAKSPSYYKRG-DY-VPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 240 --~--------~~~~~~~~~~g-~~-~~~~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
. .....|+.+.+ ++ ++++. .+-.++.++.+++++|+++ +||+|||+.+
T Consensus 132 g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~---~Gp~lIeV~~ 192 (280)
T PRK11869 132 GFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKH---KGLAIVDIFQ 192 (280)
T ss_pred CcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 0 01123666665 34 66554 2345899999999999975 9999999984
No 122
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.22 E-value=1.1e-10 Score=113.63 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=84.5
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccc-ccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccc----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG-AANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR---- 240 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDG-a~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~---- 240 (394)
...+.+|.++|+|+|+++|. ++..||++.||| ++..| ..| |..|++.++|+++||.||+ |++..-+..
T Consensus 56 ~~~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig-~~e-L~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~ 129 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIG-LGH-LPHAARRNVDITYIVSNNQVYGLTTGQASPTTP 129 (279)
T ss_pred CcccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHcc-HHH-HHHHHHHCcCcEEEEEEChhhhhhcccccCCCC
Confidence 45788999999999999995 678899999999 58776 333 8899999999877777665 887532110
Q ss_pred ----c--cc--C----cchhhhc-Cc-ccEE-EEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 241 ----A--AK--S----PSYYKRG-DY-VPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 241 ----~--~~--~----~~~~~~g-~~-~~~~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
. .. . .++.+.+ ++ ++.+ +.+..++.++.+++++|++. +||++||+..
T Consensus 130 ~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~---~Gps~I~v~~ 191 (279)
T PRK11866 130 RGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKH---KGFSFIDVLS 191 (279)
T ss_pred CCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 00 0 1565554 23 4433 44557899999999998865 9999999983
No 123
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.20 E-value=9.3e-11 Score=114.45 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=80.4
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccccc-ccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccc-c---
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-A--- 241 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~-~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~-~--- 241 (394)
..+.+|.++|+|+|+++|. +++.|||+.|||++ ..| . ..|..|+++++|+++||.||+ |++...+.. .
T Consensus 51 ~~t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg-~-~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~ 124 (287)
T TIGR02177 51 FHGLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIG-G-NHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLK 124 (287)
T ss_pred cccccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhcc-H-HHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccC
Confidence 3466899999999999986 67899999999995 355 2 348899999999877777665 887542211 0
Q ss_pred ---c-----------cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 242 ---A-----------KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 242 ---~-----------~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
. .++++.+.+ ++ +.+ +....++.++.+++++|+++ +||+||++.+
T Consensus 125 G~~~~~~~~g~~~~~~np~~~a~A~g~g~va-~~~~~~~~eL~~ai~~Al~~---~GpslIeV~~ 185 (287)
T TIGR02177 125 GVKTKSLPYPNIQDPVNPLLLAIALGYTFVA-RGFSGDVAHLKEIIKEAINH---KGYALVDILQ 185 (287)
T ss_pred CcceeecccCccCCCCCHHHHHHhCCCCeEE-EEecCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 022344444 23 322 33336899999999999865 9999999984
No 124
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.20 E-value=1e-10 Score=114.34 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=81.2
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccc-cccchHHHHHHHHHHCCCCeEEEEEcC-Ccccccccc------
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~------ 239 (394)
..|++|.++|.|+|+++|. ++..||++.|||+ ++.| ..| |..|+++++|+++||.|| .|++...+.
T Consensus 67 ~~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg-~~e-L~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~ 140 (286)
T PRK11867 67 FHTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIG-GNH-FIHALRRNIDITYILFNNQIYGLTKGQYSPTSPV 140 (286)
T ss_pred hhhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCC-HHH-HHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCC
Confidence 3489999999999999985 6789999999996 7776 334 888999999987777666 488743211
Q ss_pred -ccc---------cCcchhhhc-Cc-ccEE-EEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 240 -RAA---------KSPSYYKRG-DY-VPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 240 -~~~---------~~~~~~~~g-~~-~~~~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
... ...++.+.+ ++ ...+ ++.-.++.++.+++++|+++ +||+|||+.+
T Consensus 141 g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~---~Gp~lIev~~ 201 (286)
T PRK11867 141 GFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH---KGFSFVEILQ 201 (286)
T ss_pred CcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 000 012455554 22 3333 33345789999999998864 8999999984
No 125
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.20 E-value=1.3e-10 Score=124.34 Aligned_cols=119 Identities=19% Similarity=0.098 Sum_probs=86.8
Q ss_pred CccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccccc--
Q 016175 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR-- 240 (394)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~~-- 240 (394)
.+....+.||.++|.|+|+++|. +++.||+++|||++......| |.+|..+++|+++||.|| .|++...+..
T Consensus 397 ~~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~~e-L~tav~~~~~i~~vVlnN~~~g~~~~q~~~~ 471 (595)
T TIGR03336 397 GTVDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGIPG-LINAVYNKANITVVILDNRITAMTGHQPNPG 471 (595)
T ss_pred cccceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCHHH-HHHHHHcCCCeEEEEEcCcceeccCCCCCCC
Confidence 33445689999999999999885 568899999999987532444 788999999987777666 5887432211
Q ss_pred --------cccCcchhhhc-Cc-ccEEEEe-CCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 241 --------AAKSPSYYKRG-DY-VPGLKVD-GMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 241 --------~~~~~~~~~~g-~~-~~~~~VD-G~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
.....+|.+.+ ++ +++.+|. -.|+.++..++++|++. +||++|++..
T Consensus 472 ~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~---~gp~li~v~~ 529 (595)
T TIGR03336 472 TGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAA---EGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhc---CCCEEEEEcc
Confidence 01234677765 44 7778774 45777788888888754 8999999963
No 126
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.20 E-value=3.1e-11 Score=128.35 Aligned_cols=111 Identities=21% Similarity=0.177 Sum_probs=83.3
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccc----c---
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE----W--- 239 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~----~--- 239 (394)
+.|.+|+++|.|+|+++| +++.|||++|||++++. ..| |.+|+++++|+++||.|| +|++-... .
T Consensus 423 g~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~-~~e-L~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~ 495 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD-LNG-LLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPV 495 (568)
T ss_pred CccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC-cHH-HHhhcccCCCeEEEEEECCCCccccCCCCCCCcch
Confidence 357899999999999998 26679999999998874 344 888999999986666655 57742110 0
Q ss_pred --c---cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 240 --R---AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 240 --~---~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
+ .....+|.+.+ ++ +++++|+ +..++.+++++|++. ++|+|||+.+
T Consensus 496 ~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~p~lIev~i 548 (568)
T PRK07449 496 FERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALPT---PGLTVIEVKT 548 (568)
T ss_pred hhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhcC---CCCEEEEEeC
Confidence 0 11235788887 55 8888885 688999999888743 8999999987
No 127
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.18 E-value=1.8e-09 Score=105.86 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=117.2
Q ss_pred CccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccccc-ccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccc-
Q 016175 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR- 240 (394)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~-~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~- 240 (394)
++...++.+|.+.++|.|++.|.+..+++..||++.|||++ .-| + ++|.-|...+.++++||.||. |+++.-+.-
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG-~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG-F-QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc-H-HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 45556889999999999999998876667789999999995 444 3 789999999999999888887 775421110
Q ss_pred --------------------cccCcchhhhc-Cc-ccE-EEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEE--eeecCC
Q 016175 241 --------------------AAKSPSYYKRG-DY-VPG-LKVDGMDALAVKQACKFAKEHALKNGPMILEMD--TYRYHG 295 (394)
Q Consensus 241 --------------------~~~~~~~~~~g-~~-~~~-~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~--t~R~~G 295 (394)
.....++...+ ++ ++. .+++-.++.++.+++++|.++ +||.+|++. |..+.|
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~---~Gps~I~v~sPC~~~~~ 217 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV---EGPAYIQVLQPCPTGWG 217 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCCC
Confidence 00012333333 22 333 366767999999999998875 999999998 455555
Q ss_pred CCCCCC--------CCC----CCC-chhhhhhhhcCCHH-------HHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHH
Q 016175 296 HSMSDP--------GST----YRT-RDEISGVRQERDPI-------ERIRKLILAHD---LATEKELKDIEKEVRKEVDD 352 (394)
Q Consensus 296 Hs~~D~--------~~~----YR~-~~e~~~~~~~~DPi-------~~~~~~L~~~g---~~t~~~l~~i~~e~~~~v~~ 352 (394)
+...+. .+. ||= +..++ ...+|. .-++++|..+| -+++++++++++++.+..+.
T Consensus 218 ~~~~~~~~~~klAvetg~~plye~~~g~~~---~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~v~~~~~~ 294 (299)
T PRK11865 218 FPPEKTIEIGRLAVETGYWPLFEIENGKFK---ITYEPLHLDRRTRKPIEEYLKVQGRFKHLTEEDIEILQKYIDEKWKE 294 (299)
T ss_pred CCHHHHHHHHHHHHhcCceeEEEEECCeec---cCCCcccccccCCCCHHHHHhhCcchhcCCHHHHHHHHHHHHHHHHH
Confidence 543321 011 210 11111 011121 23566666554 45788888888777776543
No 128
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.91 E-value=3.1e-09 Score=125.25 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=85.4
Q ss_pred cCCcCCccc--hhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHC--CCCeEEEEEcCC-ccccccc--
Q 016175 166 YGGHGIVGA--QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--DLPAILVCENNH-YGMGTAE-- 238 (394)
Q Consensus 166 ~~~~g~lG~--~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~--~LpvI~vv~NN~-~~i~~~~-- 238 (394)
.++.|.+|. ++|.|+|+++|. ++.|+|++|||+++.. ..| |.+|+++ ++|+++||.||+ |+|-...
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~-~~E-L~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~ 827 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD-TNG-LSILSQRIARKPMTILVINNHGGAIFSLLPI 827 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh-hhH-HHHhhcccCCCCEEEEEEeCCCcHhhhcCcc
Confidence 356799999 599999999885 5789999999998863 444 8888874 999866666664 6653210
Q ss_pred ----c-----c---cccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 239 ----W-----R---AAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 239 ----~-----~---~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
. . ....++|.+.+ +| +++.+|+ ++.++.+++++|.+. ++|+|||+.|-|
T Consensus 828 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~~---~~p~lIEV~t~~ 890 (1655)
T PLN02980 828 AKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQVE---QMDCVVEVESSI 890 (1655)
T ss_pred CCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhcc---CCCEEEEEecCh
Confidence 0 0 01235787777 55 9999996 588988888877743 899999999944
No 129
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.84 E-value=5.3e-09 Score=107.36 Aligned_cols=115 Identities=20% Similarity=0.261 Sum_probs=78.1
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCC-eEEEEEcCCcccccccccc-ccCc
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRA-AKSP 245 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~-~~~~ 245 (394)
-+|++|+.+|.+.|+++|. +++++|.|+|||+++. .+.| +..--+|+|| +|||++|++|.|....... .+..
T Consensus 409 lWGSIG~t~pAalGa~~A~----~drR~IL~iGDGs~Ql-TvQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YN 482 (557)
T COG3961 409 LWGSIGYTLPAALGAALAA----PDRRVILFIGDGSLQL-TVQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYN 482 (557)
T ss_pred chhhcccccHhhhhhhhcC----CCccEEEEEcCchhhh-hHHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcc
Confidence 6899999999999999998 5689999999999987 5777 7777799998 7899999999986543321 1111
Q ss_pred -----chh----hhcCc-ccE-EEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 246 -----SYY----KRGDY-VPG-LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 246 -----~~~----~~g~~-~~~-~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
+|. .+|.. ... .++ ..-+.+..+++.+.+. ++++.+|||++.+
T Consensus 483 dI~~Wd~~~l~~afg~~~~~~~~~~--~~~~~l~~~~~~~~~~--~~~i~lIEv~lp~ 536 (557)
T COG3961 483 DIQSWDYTALPEAFGAKNGEAKFRA--TTGEELALALDVAFAN--NDRIRLIEVMLPV 536 (557)
T ss_pred cccccchhhhhhhcCCCCceEEEee--cChHHHHHHHHHHhcC--CCceEEEEEecCc
Confidence 222 23321 222 233 1233444445444432 2689999999754
No 130
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.81 E-value=5.7e-08 Score=98.98 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=86.0
Q ss_pred CCCCCc-cCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEE-cCC-ccccc
Q 016175 160 KKDSGF-YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNH-YGMGT 236 (394)
Q Consensus 160 ~~~~~~-~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~-NN~-~~i~~ 236 (394)
.|.+++ .|..|.||-|++.|+|+|++. +++.|+|+.||+++.- ...| +.++.+++||||.||. ||+ ||..+
T Consensus 419 ~Pr~rLDaGtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGf-SaME-~ET~vR~~Lpvv~vV~NN~Giyg~d~ 492 (571)
T KOG1185|consen 419 GPRRRLDAGTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGF-SAME-LETFVRYKLPVVIVVGNNNGIYGLDD 492 (571)
T ss_pred CcccccCCccccccccchhHHHHHHhhC----CCCeEEEEecCcccCc-chhh-HHHHHHhcCCeEEEEecCCcccccCc
Confidence 444444 367899999999999888887 8999999999999876 3556 8899999999866666 555 66543
Q ss_pred cccccc---------------cCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEee
Q 016175 237 AEWRAA---------------KSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (394)
Q Consensus 237 ~~~~~~---------------~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (394)
....+. ...+|...+ ++ ..++.|+ .++++..+++++.+. .++|++|.+..-
T Consensus 493 ~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~--~~~psvINVlI~ 560 (571)
T KOG1185|consen 493 DGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQD--TDKPSVINVLIG 560 (571)
T ss_pred ccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhc--CCCCeEEEEEec
Confidence 322111 112444433 22 5567787 688998888887753 268999999763
No 131
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=98.79 E-value=1.1e-07 Score=100.42 Aligned_cols=129 Identities=26% Similarity=0.226 Sum_probs=95.9
Q ss_pred CCcCCccchhhHHHHHHHHhhhC-------CCCCeEEEEEcccccccchHHHHHHHHHHCCCC-eEEEEEcCCccccccc
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYS-------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAE 238 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~-------~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~ 238 (394)
..+++||-|...|+=-|.-.||. .++..|+||+|||++.|++..+|+.+|++++|. +||||+-|......+.
T Consensus 189 FpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpV 268 (887)
T COG2609 189 FPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPV 268 (887)
T ss_pred cCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcc
Confidence 57899999999998888887763 356799999999999999999999999999999 6899987766543322
Q ss_pred cc---------------------------------------------cccCcchhhh----cCcc--------c------
Q 016175 239 WR---------------------------------------------AAKSPSYYKR----GDYV--------P------ 255 (394)
Q Consensus 239 ~~---------------------------------------------~~~~~~~~~~----g~~~--------~------ 255 (394)
.. ...+.+|..+ |+|+ |
T Consensus 269 rgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLV 348 (887)
T COG2609 269 RGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALV 348 (887)
T ss_pred cCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHH
Confidence 10 0011122211 1111 1
Q ss_pred ---------EEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCCCC
Q 016175 256 ---------GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (394)
Q Consensus 256 ---------~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (394)
.+.--|||+..|++|++.|.++ +++|++|.+.|.+++|-.
T Consensus 349 a~~tD~diw~L~rGGHD~~ki~aA~~~A~~~--kg~PtvilA~TIKGyglg 397 (887)
T COG2609 349 ADMTDDDIWALNRGGHDPEKVYAAFKKAQEH--KGRPTVILAKTIKGYGLG 397 (887)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHHhcC--CCCceEEEEeeeccccCc
Confidence 1234699999999999998875 258999999999999865
No 132
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.62 E-value=7.7e-08 Score=94.20 Aligned_cols=158 Identities=25% Similarity=0.269 Sum_probs=112.9
Q ss_pred HHHHHHHHhCCCCCCCCCCCCc-------cCccCCCCCc-cCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccc
Q 016175 134 LLEVFSELMGRKDGCSHGKGGS-------MHFYKKDSGF-YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN 205 (394)
Q Consensus 134 ~~~vlael~g~~~~~~~G~ggs-------~H~~~~~~~~-~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~ 205 (394)
+|+-|.+.||+...+..--|-| .|.+.|.+.+ .|..|+||+.+|.|+|+..|. +++-++++.||-.++
T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~ad----p~r~vvalsgdydfq 450 (592)
T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVAISGDYDFQ 450 (592)
T ss_pred HHHHHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeecC----CCCceEEeecCchHH
Confidence 5677778899876532222222 6777776544 467899999999999987765 788899999999998
Q ss_pred cchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccc--------cCcchh-----hhc---------CcccEEEEeCC
Q 016175 206 QGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAA--------KSPSYY-----KRG---------DYVPGLKVDGM 262 (394)
Q Consensus 206 eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~--------~~~~~~-----~~g---------~~~~~~~VDG~ 262 (394)
- ..|.|...+++|||-|+|+.||.|- ......+.+ ...++. .+| -.+..++| .
T Consensus 451 f--mieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv--~ 526 (592)
T COG3960 451 F--LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV--F 526 (592)
T ss_pred H--HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEe--c
Confidence 5 6788999999999999999999873 222111111 100111 111 11444566 4
Q ss_pred CHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCC
Q 016175 263 DALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 263 D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (394)
++.++..|+.+|.....+ .-|+++|+..-|....|+.
T Consensus 527 ~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 527 KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 688888999999887777 7899999999988777765
No 133
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.55 E-value=1.2e-07 Score=95.36 Aligned_cols=225 Identities=19% Similarity=0.226 Sum_probs=132.8
Q ss_pred ceeeeCCCCccceecCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCc-----hHHHHH
Q 016175 36 PLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYK-----AKLVRGFCHLYDG-----QEAVAI 105 (394)
Q Consensus 36 ~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~l~~~m~~~R~~e~~~~~l~~-----~g~i~gf~h~~~G-----qEa~~v 105 (394)
-+-|+++ |-+-.+.-.|.....=+..+.++.....+..|..+.+++.+.+ ++.--.|.-...| |+.+.+
T Consensus 402 IiHfdis-pknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~sf~~~tpGe~ikPQ~vIk~ 480 (675)
T KOG4166|consen 402 IIHFDIS-PKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLSFKEETPGEAIKPQYVIKV 480 (675)
T ss_pred eEEEecC-HHHhCcccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhCCeeeeccCCccccChHHHHHH
Confidence 4667776 5454444445444444444555555566677777766654332 2211112211123 333222
Q ss_pred HHHhccCCCCeeecCCcchhhHhhcCCCHHHHHHHHhCCCCCCCCCCCCccCccCCCCC-ccCCcCCccchhhHHHHHHH
Q 016175 106 GMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSG-FYGGHGIVGAQIPLGCGLAF 184 (394)
Q Consensus 106 g~~~aL~~~D~~~~~yRd~~~~lsrG~~~~~vlael~g~~~~~~~G~ggs~H~~~~~~~-~~~~~g~lG~~lp~A~G~A~ 184 (394)
|. .+...--++ ..+..|+.--++++.-|=+ +-.|..- ..|+.|.||.|+|.|+|+..
T Consensus 481 -----Ld---k~t~d~~~k-viitTGVGqHQMWAAqfy~-------------w~kP~~~~tSGGLGtMGfGLPAAIGAsV 538 (675)
T KOG4166|consen 481 -----LD---KLTDDTGRK-VIITTGVGQHQMWAAQFYN-------------WKKPRQWLTSGGLGTMGFGLPAAIGASV 538 (675)
T ss_pred -----HH---HhccCcCce-EEEeccccHHHHHHHHHhc-------------ccCccceeecCCccccccCcchhhcccc
Confidence 11 111111111 3445555555665543211 1112111 13678999999999999988
Q ss_pred HhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC-Cccccccccc----------cccCcchhhhc-C
Q 016175 185 AQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----------AAKSPSYYKRG-D 252 (394)
Q Consensus 185 A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN-~~~i~~~~~~----------~~~~~~~~~~g-~ 252 (394)
|. ++.+||-+=||+++++- +.| |..+...++||-+++-|| ..||.+.-+. ...+|+|-.++ +
T Consensus 539 A~----P~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~A 612 (675)
T KOG4166|consen 539 AN----PDAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAAA 612 (675)
T ss_pred cC----cccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHHh
Confidence 75 88999999999998873 566 899999999995555555 5777653221 12357888887 4
Q ss_pred -cccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecC
Q 016175 253 -YVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (394)
Q Consensus 253 -~~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (394)
.+++++|.- -+++.+.+++.+.- +||+|+|+.+-...
T Consensus 613 mGikalRV~K--~edL~~k~keflsT---kGPvLleV~v~~ke 650 (675)
T KOG4166|consen 613 MGIKALRVTK--KEDLREKIKEFLST---KGPVLLEVIVPHKE 650 (675)
T ss_pred cCCchheeeh--HHHHHHHHHHHhCC---CCCeEEEEEccCcc
Confidence 399999963 45777777776643 99999999976543
No 134
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.46 E-value=7.2e-07 Score=91.67 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=77.4
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCC-eEEEEEcCCccccccccccccCc-
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSP- 245 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~~~~~~~~~- 245 (394)
.+|++|+.+|.++|+++|. +++++|+|.|||+++. .+.| +....+|+|| .||+++|++|.|........ ..
T Consensus 413 ~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~ql-TvQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~-Yn~ 485 (561)
T KOG1184|consen 413 QWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQL-TVQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGP-YND 485 (561)
T ss_pred EEeeccccchhhhhhhhcc----CCceEEEEecCcccee-eHHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCC-ccc
Confidence 6899999999999999998 5689999999999987 4777 7777799999 58888889999865443311 11
Q ss_pred ----chhh----hcCc---ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 246 ----SYYK----RGDY---VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 246 ----~~~~----~g~~---~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
+|.+ +|+. ....+| ..-.+...+.+.+.-. .++++.+|||..
T Consensus 486 I~~Wd~~~l~~afg~~~gk~~~~~v--~~~~e~~~~~~~~~~~-~~~~i~liEv~l 538 (561)
T KOG1184|consen 486 IQNWDYTALLEAFGAGEGKYETHKV--RTEEELVEAIKDATFE-KNDKIRLIEVIL 538 (561)
T ss_pred cccchHHHHHHhhcCccceeEEeee--ccchHHHHHHhhhhhc-ccCceEEEEEec
Confidence 2322 2311 223333 1223455555555421 127899999986
No 135
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.31 E-value=4.6e-06 Score=84.93 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=83.7
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEE-EcCCcc-cccccc-----
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYG-MGTAEW----- 239 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv-~NN~~~-i~~~~~----- 239 (394)
-+.+.||+-+.-++|+.+| .+++-|++++|||+..+ .+..|.++..++..+++|+ +|-+|| |..-+-
T Consensus 441 YgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~ 514 (617)
T COG3962 441 YGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGA 514 (617)
T ss_pred ecccccccccccccccccC----CCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcc
Confidence 3568999999999998744 47889999999999774 6667999999999975554 565788 322110
Q ss_pred ------------ccccCcchhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEee
Q 016175 240 ------------RAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (394)
Q Consensus 240 ------------~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (394)
.....-||+..+ .| ...++|. +++++.+|++.|++. .++++|+++|.
T Consensus 515 sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~~---~~ttvi~I~t~ 575 (617)
T COG3962 515 SFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKAS---DRTTVIVIDTD 575 (617)
T ss_pred hhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHhC---CCCEEEEEecC
Confidence 112233677766 45 7778885 788888877776653 89999999974
No 136
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.11 E-value=1e-05 Score=80.55 Aligned_cols=133 Identities=21% Similarity=0.269 Sum_probs=75.2
Q ss_pred cCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCC-----C-----eEE
Q 016175 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-----P-----AIL 225 (394)
Q Consensus 156 ~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~L-----p-----vI~ 225 (394)
.|......|-..--|-||+.+++|.|++|- +++-+++|++|||++.+|- +|+.|.. | |+=
T Consensus 126 SH~~p~tPGsIhEGGELGYaLshA~GA~~D----nPdliv~~vvGDGEaETGp------lA~sWh~~kflnP~~dGaVLP 195 (379)
T PF09364_consen 126 SHVSPETPGSIHEGGELGYALSHAFGAVFD----NPDLIVACVVGDGEAETGP------LAASWHSNKFLNPATDGAVLP 195 (379)
T ss_dssp SSS-TTSTT-S---SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-TTTS-EEEE
T ss_pred cccCcCCCCccCcCcchhhHHHHHhhcccC----CCCeEEEEEecCCcccCCc------ccccccccceeCcccCceeec
Confidence 455433334333468899999999998864 5899999999999999986 4555532 2 566
Q ss_pred EEEcCCcccccccccccc-Ccchhhh--cCcccEEEEeCCCHHHHHHHHHHHHHH-----------HhhC----CC--EE
Q 016175 226 VCENNHYGMGTAEWRAAK-SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEH-----------ALKN----GP--MI 285 (394)
Q Consensus 226 vv~NN~~~i~~~~~~~~~-~~~~~~~--g~~~~~~~VDG~D~~av~~a~~~A~~~-----------ar~~----gP--~l 285 (394)
|+.=|+|-|+.++--... ..++..+ |..+..+.|+|.|+.++.+.+..+++. +|++ +| -+
T Consensus 196 ILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPm 275 (379)
T PF09364_consen 196 ILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPM 275 (379)
T ss_dssp EEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEE
T ss_pred eEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcE
Confidence 666799999877643222 2234332 322566789999999998766554422 2221 23 47
Q ss_pred EEEEeeecCCCCC
Q 016175 286 LEMDTYRYHGHSM 298 (394)
Q Consensus 286 Ie~~t~R~~GHs~ 298 (394)
|.++|.++.+-..
T Consensus 276 ivlRtPKGWtgP~ 288 (379)
T PF09364_consen 276 IVLRTPKGWTGPK 288 (379)
T ss_dssp EEEE--TTTTS-S
T ss_pred EEEECCcccCCcc
Confidence 8899998876543
No 137
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.89 E-value=0.0002 Score=70.48 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=79.6
Q ss_pred CCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccc-cccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc------
Q 016175 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------ 238 (394)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~------ 238 (394)
..++.-|-+.++|.|+.+|.+ +..|+++.|||. +..|-- .|.-+...+.++++||-||. |+.+.-+
T Consensus 67 ~~hs~~gra~a~atGik~A~~----~l~Viv~gGDG~~~dIG~~--~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp 140 (294)
T COG1013 67 WVHSLHGRAAAVATGIKLANP----ALSVIVIGGDGDAYDIGGN--HLIHALRRNHDITYIVVDNEVYGNTGGQASPTTP 140 (294)
T ss_pred ceeeccCcchhhHHHHHHhcc----CCeEEEEecchhHhhhhhH--HHHHHHHcCCCeEEEEECCeecccCCCccCCCCC
Confidence 346778899999999999984 458999999995 777743 37778899999887777776 8764211
Q ss_pred -cccc---c------Cc-chhhhc--Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 239 -WRAA---K------SP-SYYKRG--DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 239 -~~~~---~------~~-~~~~~g--~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
...+ + .+ +....+ .+ .-+.++---|+..+.+.+++|+++ +||.+|++-+
T Consensus 141 ~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~---~Gps~I~v~s 203 (294)
T COG1013 141 KGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH---KGPSFIDVLS 203 (294)
T ss_pred CCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc---cCCeEEEEec
Confidence 1100 0 11 222232 22 223455444689999999999876 8999999974
No 138
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.0036 Score=67.10 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=70.6
Q ss_pred cCccCCCCCccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHH-HHCCCC----eEEEEEcC
Q 016175 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA-ALWDLP----AILVCENN 230 (394)
Q Consensus 156 ~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~A-a~~~Lp----vI~vv~NN 230 (394)
.|......|...--|.||+++..|.|+|+= .++-++.|++|||+...|...- -..+ .-++.+ ++=|..=|
T Consensus 139 SH~~petPGsIhEGGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgplat-sWhs~kf~np~~dGavLPIL~lN 213 (793)
T COG3957 139 SHVAPETPGSIHEGGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGPLAT-SWHSNKFLNPARDGAVLPILHLN 213 (793)
T ss_pred cccCCCCCCccCcCcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCcccc-ccccccccCccccCceeeEEEec
Confidence 465533335555678999999999998864 5889999999999887775221 1111 112222 56667779
Q ss_pred CccccccccccccC-cchhhh--cCcccEEEEeCCCHHHHHHHHH
Q 016175 231 HYGMGTAEWRAAKS-PSYYKR--GDYVPGLKVDGMDALAVKQACK 272 (394)
Q Consensus 231 ~~~i~~~~~~~~~~-~~~~~~--g~~~~~~~VDG~D~~av~~a~~ 272 (394)
+|.|+.++.....+ .++.++ |.+..-+.|+|.|+.++.+.+.
T Consensus 214 GykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mA 258 (793)
T COG3957 214 GYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMA 258 (793)
T ss_pred ceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhHH
Confidence 99998776543322 234443 3224446688889888554443
No 139
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=96.80 E-value=0.0074 Score=64.26 Aligned_cols=116 Identities=23% Similarity=0.220 Sum_probs=79.6
Q ss_pred CccCCcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccccc-ccchHHHHHHHHHHCCCCeEEEEEcCCc-ccccccccc
Q 016175 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRA 241 (394)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~-~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i~~~~~~~ 241 (394)
+....+-.+|.++++|-|+.++. .+++|+++|||.+ ..|. .+|..|...+.+++++|-+|.+ +|+..+..-
T Consensus 422 ~~~d~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~p 494 (640)
T COG4231 422 NTVDTTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHP 494 (640)
T ss_pred chhhhhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCC
Confidence 43445677899999999998875 3789999999995 4454 3488899999998777777775 575443221
Q ss_pred ----------ccCcchhh--hcCccc-EEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 242 ----------AKSPSYYK--RGDYVP-GLKVDGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 242 ----------~~~~~~~~--~g~~~~-~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
+..-.+.. ++..+. ...||=.|+..+.+++++|++. .||.+|.++
T Consensus 495 g~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~---~gpsViiak 552 (640)
T COG4231 495 GTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV---PGPSVIIAK 552 (640)
T ss_pred CcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC---CCceEEEEc
Confidence 00011111 222222 2356778999999999998876 889999776
No 140
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=96.71 E-value=0.036 Score=56.06 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=58.5
Q ss_pred CeEEEEEcccc-cccchHHHHHHHHHHCCCCeEEEEEcCC-ccccc-------cccccc---------cCcchhhhc-Cc
Q 016175 193 TVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGT-------AEWRAA---------KSPSYYKRG-DY 253 (394)
Q Consensus 193 ~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~-------~~~~~~---------~~~~~~~~g-~~ 253 (394)
.-|+++.|||. ..-|- ..|.-|...+.++++||-||. |+.+. +....+ .-.|....+ .+
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 47999999996 56663 236667778888876666665 87642 111110 001232222 22
Q ss_pred -c-cEEEEe-CCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 254 -V-PGLKVD-GMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 254 -~-~~~~VD-G~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
. -+.++- |-++.++.+++++|.++ +||.+|++.+
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~---~Gps~I~v~s 266 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY---DGPSLIIAYS 266 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC---CCCEEEEEEc
Confidence 2 223443 34889999999999976 9999999985
No 141
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=96.15 E-value=0.014 Score=61.46 Aligned_cols=106 Identities=23% Similarity=0.220 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCC-eEEEEEcCCcccccc---------ccccccC
Q 016175 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTA---------EWRAAKS 244 (394)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~Lp-vI~vv~NN~~~i~~~---------~~~~~~~ 244 (394)
-++-|+|++.|. .+.++.++||=++-.-. -+|-+......| +|+|++||+-||-.. .++.+..
T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~t 499 (566)
T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGT 499 (566)
T ss_pred hHHHHhhhhhhc-----CCceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCC
Confidence 478899999875 45699999999853211 124445556667 478888888776211 1222222
Q ss_pred c---chhhhc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeee
Q 016175 245 P---SYYKRG-DY-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (394)
Q Consensus 245 ~---~~~~~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (394)
| ||...+ .| +...+++ .+.++.+++..+..+ .|=.+||++|-|
T Consensus 500 Ph~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~~---~g~~viEvkt~r 547 (566)
T COG1165 500 PHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWRR---SGTTVIEVKTDR 547 (566)
T ss_pred CCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhccC---CCcEEEEEecCh
Confidence 2 555544 34 5555555 467777777765543 778999999865
No 142
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=95.40 E-value=0.18 Score=43.69 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=56.9
Q ss_pred hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhcCcc
Q 016175 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYV 254 (394)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g~~~ 254 (394)
...|.|.+++. ...++++.+|-|..+ ..+++..|...++|+|+++...+.. ..... .+ ..+.......+
T Consensus 48 ~~~A~G~a~~~----~~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~~~~-~q--~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----GPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAKQT-FQ--SMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhccCc-cc--ccCHHHHHHHh
Confidence 44566666543 222333344888764 5677888888999999998665532 11111 01 11111111012
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (394)
+.+.+--.+..++.+.+.+|+..+.. .||++|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 22222224556666677777776666 89999976
No 143
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=94.42 E-value=0.61 Score=41.08 Aligned_cols=90 Identities=24% Similarity=0.128 Sum_probs=55.9
Q ss_pred eEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhcC-cccEEEEeCCCHHHHHHHH
Q 016175 194 VTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGD-YVPGLKVDGMDALAVKQAC 271 (394)
Q Consensus 194 ~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g~-~~~~~~VDG~D~~av~~a~ 271 (394)
++++..|-|..| ....|-.|...+.|+|+|+-+.... .+.+ .......+...... ..+..++ .++.++.+.+
T Consensus 67 v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 140 (160)
T cd07034 67 AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQSDLMAARYGGHPWPVLAP--SSVQEAFDLA 140 (160)
T ss_pred EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCC-CcCcHHHHHHHhCCCCEEEEeC--CCHHHHHHHH
Confidence 777888888877 4566777888899999888654322 2211 00000001111111 1223344 5789999999
Q ss_pred HHHHHHHhh-CCCEEEEEE
Q 016175 272 KFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 272 ~~A~~~ar~-~gP~lIe~~ 289 (394)
+.|+..+++ ++|++|..+
T Consensus 141 ~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 141 LEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HHHHHHHHHhCCCEEEEcC
Confidence 999999888 889998653
No 144
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=93.99 E-value=0.55 Score=41.11 Aligned_cols=103 Identities=20% Similarity=0.217 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc-cccccccccccCcchhhh-cC
Q 016175 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR-GD 252 (394)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i~~~~~~~~~~~~~~~~-g~ 252 (394)
....|.|.+++. +.-.++++-.|=|.+| ..+++..|...++|+|++.-+... ..+... .+ ..+.... ..
T Consensus 46 A~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~-~q--~~d~~~~~~~ 116 (155)
T cd07035 46 AVGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA-FQ--EIDQVALFRP 116 (155)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc-cc--ccCHHHHHHH
Confidence 344555665553 1222334444666555 567888899999999888865432 222111 00 0111111 11
Q ss_pred c-ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEE
Q 016175 253 Y-VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEM 288 (394)
Q Consensus 253 ~-~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~ 288 (394)
+ ....++ .++.++.+.+.+|+..+.. +||+.|++
T Consensus 117 ~~~~~~~i--~~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 117 ITKWAYRV--TSPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HhceEEEc--CCHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 1 123455 3678888999999988865 58999986
No 145
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=93.66 E-value=0.6 Score=47.68 Aligned_cols=116 Identities=17% Similarity=0.124 Sum_probs=74.7
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc-cccccccccccCcchhhhcC
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGD 252 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i~~~~~~~~~~~~~~~~g~ 252 (394)
+.+..|+|+++| +.++++.+-=+.+. -.+|.+.+++-.++|+|+++-+... +.+.+......+-....++.
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~~~~~ 130 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQARWGT 130 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHHhccc
Confidence 456778888876 34455554333333 3689999999999998777666432 12222211111112222331
Q ss_pred -c-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCC
Q 016175 253 -Y-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 253 -~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (394)
. ++-+.+.-.|+.+++.-...|.+.+.+ +-|++|-.+++ -+|+..
T Consensus 131 hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 131 HGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 2 554666778999999999999988877 88999999984 788754
No 146
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=93.64 E-value=0.76 Score=40.77 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=59.2
Q ss_pred hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHH-HHHHCCCCeEEEEEcCCccccccccccccCcchhhhcCcc
Q 016175 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN-IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYV 254 (394)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn-~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g~~~ 254 (394)
+++|+|+|+. | .++++..+ ..+-+ ..++.+. .++.+++|+++++...+++.+..........++.-+. .+
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~-~i 122 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLR-AI 122 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhc-CC
Confidence 4566777753 2 34455555 34333 4566666 8999999999988876654321111111111121111 26
Q ss_pred cEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEE
Q 016175 255 PGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (394)
Q Consensus 255 ~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (394)
|++.| ---|+.++...+++|++. ++|++|-+
T Consensus 123 Pg~~v~~Ps~~~~~~~ll~~a~~~---~~P~~irl 154 (156)
T cd07033 123 PNMTVLRPADANETAAALEAALEY---DGPVYIRL 154 (156)
T ss_pred CCCEEEecCCHHHHHHHHHHHHhC---CCCEEEEe
Confidence 66654 456788888888888864 77998854
No 147
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=93.25 E-value=0.8 Score=46.35 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=76.9
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccc--cccccccCcchhh-h
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYK-R 250 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~--~~~~~~~~~~~~~-~ 250 (394)
+.+..|+|+++| +.++++.+-++.+. -.+|.|.+|+-..+|+++++-+-. +-++ ....+. +.+.. +
T Consensus 59 aA~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g~t~~eq~--D~~~~~~ 127 (352)
T PRK07119 59 AAINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLGNIQPSQG--DYFQAVK 127 (352)
T ss_pred HHHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCCCCcchhH--HHHHHHh
Confidence 456778888876 45677777666655 478999999999999877776644 2111 111111 12222 3
Q ss_pred -c-C-cccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCC
Q 016175 251 -G-D-YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 251 -g-~-~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (394)
+ . ..+.+..+-.|+.+++.-...|...+.+ .-|+++-.+++ -+|+..
T Consensus 128 ~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (352)
T PRK07119 128 GGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMME 178 (352)
T ss_pred cCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCcee
Confidence 2 1 2444556777899999999999988877 88999999985 467643
No 148
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=92.47 E-value=2.3 Score=38.03 Aligned_cols=104 Identities=11% Similarity=0.075 Sum_probs=63.1
Q ss_pred cchhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHH-HCCCCeEEEEEcCCc-cccccccccc---cCcch
Q 016175 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAA-LWDLPAILVCENNHY-GMGTAEWRAA---KSPSY 247 (394)
Q Consensus 173 G~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa-~~~LpvI~vv~NN~~-~i~~~~~~~~---~~~~~ 247 (394)
+.+..+|.|..++ .+..++|+.+=|.. ..--+|..|. ..+.|+|+++-.-+. +...+..... ....+
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l 115 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLL 115 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHH
Confidence 4555666666643 34567888887743 4556677788 899999999854332 1111111000 00001
Q ss_pred hhhcCcccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEE
Q 016175 248 YKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 248 ~~~g~~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (394)
... .++...++ +++++ .++++|+..+.+ +||+.|.+.
T Consensus 116 ~~~--~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 116 DTL--GIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHc--CCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 111 14566674 57888 999999998888 899998764
No 149
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=92.39 E-value=1.6 Score=39.09 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.+.+. +.-.++++..|=|.+| ..-++.-|..-++|+|+|.-+.... .+.. ..+ +.+..... .. -
T Consensus 53 mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk 123 (164)
T cd07039 53 AASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGTD-YFQ--EVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCC-CCc--ccCHHHHHHHhhc
Confidence 445555443 3445667777888877 3456777889999999998654422 1110 001 01111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (394)
...+|+ ++..+.+++++|+..++. .||+.|++-
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 124554 677888888888888776 899999874
No 150
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=91.73 E-value=0.85 Score=40.92 Aligned_cols=106 Identities=18% Similarity=0.087 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhh-cCc
Q 016175 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR-GDY 253 (394)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~-g~~ 253 (394)
..-+|.|.+++. +.-.++++..|=|.+| ..-+|..|...+.|+|+|+-.-..........+. ..+.... ...
T Consensus 51 A~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~~d~~~~~~~~ 123 (172)
T PF02776_consen 51 AAFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQ-EIDQQSLFRPV 123 (172)
T ss_dssp HHHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTS-STHHHHHHGGG
T ss_pred hHHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhccccccc-chhhcchhccc
Confidence 344666666654 2223444444556555 3345666888999999888765432211111110 1111111 111
Q ss_pred -ccEEEEeCCCHHHHHHHHHHHHHHH-hh-CCCEEEEEE
Q 016175 254 -VPGLKVDGMDALAVKQACKFAKEHA-LK-NGPMILEMD 289 (394)
Q Consensus 254 -~~~~~VDG~D~~av~~a~~~A~~~a-r~-~gP~lIe~~ 289 (394)
-...+++ ++.++.+++++|+..+ .. .||+.|++-
T Consensus 124 ~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 124 TKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp SSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred cchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 2245664 5667777788888777 44 899999985
No 151
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=91.47 E-value=0.75 Score=53.56 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=59.6
Q ss_pred CeEEEEEcccc-cccchHHHHHHHHHHCCCCeEEEEEcCC-ccccc-------cccccc---------cCcchhhhc-Cc
Q 016175 193 TVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGT-------AEWRAA---------KSPSYYKRG-DY 253 (394)
Q Consensus 193 ~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~-------~~~~~~---------~~~~~~~~g-~~ 253 (394)
.-++++.|||. ...|- ..|.-+...+.++.+||-||. |+.+. |....+ .-.|....+ .+
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 36999999996 45552 236667788999866666664 87532 211111 011222232 22
Q ss_pred --ccEEEEe-CCCHHHHHHHHHHHHHHHhhCCCEEEEEEee
Q 016175 254 --VPGLKVD-GMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (394)
Q Consensus 254 --~~~~~VD-G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (394)
.-+.++- |-++.++.+++++|..+ +||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~---~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY---DGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC---CCCEEEEEECC
Confidence 2234665 55889999999998876 99999999853
No 152
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=90.87 E-value=1.7 Score=44.50 Aligned_cols=116 Identities=13% Similarity=0.098 Sum_probs=73.0
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccccccCcchhhhcC
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKRGD 252 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~~~~~~~~~~~g~ 252 (394)
+.+..|+|+++|- .++++.+-=+.+. -.+|.+.+|+...+|+|+++-+-. -+.+.+......+......+.
T Consensus 58 aA~~~a~GAs~aG------~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~~~~~~~ 129 (375)
T PRK09627 58 SGISVALGASMSG------VKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVNQAKNPT 129 (375)
T ss_pred HHHHHHHHHHhhC------CCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHHHHHhcCC
Confidence 3567778888763 3455554333333 367899999999999877666542 222222221111122222222
Q ss_pred c--ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCC
Q 016175 253 Y--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 253 ~--~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (394)
+ .+-+.+.-.|+.+++.....|.+.+.+ .-|++|-.+++ -+|+..
T Consensus 130 hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~--lsh~~~ 177 (375)
T PRK09627 130 HGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDET--VGHMYG 177 (375)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchH--HhCCee
Confidence 1 334556778899999999999988887 89999999983 377754
No 153
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=90.77 E-value=1.4 Score=47.31 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=73.0
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccccccCcchhhhc-
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKRG- 251 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~~~~~~~~~~~g- 251 (394)
+.+..|+|+++|- .++++.+-=..++ -.+|.|.+|+...+|+|+++-|.. -+.+.++.....+-.+...+
T Consensus 248 aA~~~a~GAs~aG------~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 248 AAINMAIGASYAG------ARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHHhHHhcC------CceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCccHHHHHHHhcCC
Confidence 3466777887763 3455544444444 578999999999999766665543 22221221111111123233
Q ss_pred Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCC
Q 016175 252 DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (394)
Q Consensus 252 ~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (394)
.. .+.+.+.-.|+.+++....+|...+.+ .-|+++-.+++. +|+.
T Consensus 320 hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l--~~~~ 366 (562)
T TIGR03710 320 HGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL--ANSY 366 (562)
T ss_pred CCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH--hCCc
Confidence 12 444556778999999999999988888 899999999985 5543
No 154
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=90.23 E-value=1.2 Score=51.52 Aligned_cols=65 Identities=23% Similarity=0.174 Sum_probs=48.1
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccc-cccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE 238 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~ 238 (394)
+...||.....++|++.+. .++.+|+.+|||. +..|.. +|.-|...+.+++++|-.|. -+|+..+
T Consensus 479 ~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~~--al~~AV~~~~nit~~IL~N~~vAMTGgQ 545 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGLL--AIRAAVAAGVNITYKILYNDAVAMTGGQ 545 (1165)
T ss_pred eeeccCCcchhhceecccc----CCCcEEEEeccccchhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCC
Confidence 4566899999999988753 2356999999999 455643 48888888999876666555 6786544
No 155
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=89.96 E-value=1.4 Score=51.08 Aligned_cols=66 Identities=21% Similarity=0.125 Sum_probs=49.6
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEcccc-cccchHHHHHHHHHHCCCCeEEEEEcCC-cccccccc
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW 239 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa-~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~ 239 (394)
+.-.||.....++|++-+. .++.+|+++|||. +..|.. +|.-|...+.+++++|-+|. -+|+..+.
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp 533 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQP 533 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCC
Confidence 3456899999999988773 2356999999999 555654 68888899999877777666 56865443
No 156
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=89.35 E-value=1.7 Score=41.34 Aligned_cols=109 Identities=18% Similarity=0.116 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc---ccccccccccCcch-hhh
Q 016175 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG---MGTAEWRAAKSPSY-YKR 250 (394)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~---i~~~~~~~~~~~~~-~~~ 250 (394)
.+..++|++++- .++++..-=..++ ...|.|.+++-.++|+|+++-|-.-. +.+..+. .|+ ..+
T Consensus 48 A~~~~~GAs~aG------~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~~q----~D~~~~~ 115 (230)
T PF01855_consen 48 AMEAAIGASAAG------ARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQPEQ----DDLMAAR 115 (230)
T ss_dssp HHHHHHHHHHTT--------EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB-S----HHHHHTT
T ss_pred HHHHHHHHHhcC------CceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcCCh----hHHHHHH
Confidence 456777777753 3444444333333 35678999999999987777664321 2111111 122 222
Q ss_pred cCcccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCC
Q 016175 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (394)
Q Consensus 251 g~~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (394)
-..++ .+...|+.+.+.-...|.+.+.+ .-|+++-.++++. .|+.
T Consensus 116 d~~~~--vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 116 DSGWI--VLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp TSS-E--EEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred hcCeE--EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 22243 34556888999888889988888 9999999998875 2554
No 157
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=88.93 E-value=2.1 Score=38.61 Aligned_cols=97 Identities=23% Similarity=0.218 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHhhhCCCCCeEEEE--EcccccccchHHHHH-HHHHHC--------CCCeEEEEEcCCcccccccccccc
Q 016175 175 QIPLGCGLAFAQKYSKDETVTFAL--YGDGAANQGQLFEAL-NIAALW--------DLPAILVCENNHYGMGTAEWRAAK 243 (394)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~l--~GDGa~~eG~~~Eal-n~Aa~~--------~LpvI~vv~NN~~~i~~~~~~~~~ 243 (394)
.++.|.|+|+. +.++|+. +++= -. ..+|-+ +-++.+ ++||++++..-+++...++. .
T Consensus 56 ~vg~AaGlA~~------G~~pi~~~~~a~F--l~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th--s- 123 (167)
T cd07036 56 IVGLAVGAAMN------GLRPIVEIMFADF--AL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH--S- 123 (167)
T ss_pred HHHHHHHHHHc------CCEEEEEeehHHH--HH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh--h-
Confidence 34566666653 3455543 5543 22 345544 334433 59999998665555322221 1
Q ss_pred CcchhhhcCcccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEE
Q 016175 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (394)
Q Consensus 244 ~~~~~~~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (394)
..+. ..-..+|++.| .=-|..+....++.++++ ++|+++-
T Consensus 124 ~~~~-a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~---~~P~~~~ 164 (167)
T cd07036 124 QSLE-AWFAHIPGLKVVAPSTPYDAKGLLKAAIRD---DDPVIFL 164 (167)
T ss_pred hhHH-HHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 1122 11112676655 446788888888888865 8898873
No 158
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=88.84 E-value=4.3 Score=41.76 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=71.4
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcch-hhhcC
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY-YKRGD 252 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~-~~~g~ 252 (394)
+.+..|+|+++| +.++++.+--+.++ -.+|.|.+|+-..+|+|+++.|-.-. ++........|+ ..+..
T Consensus 60 aA~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~~~d~ 129 (390)
T PRK08366 60 SAMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLAQRDT 129 (390)
T ss_pred HHHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHHHhhc
Confidence 456788888886 34566555444444 47899999999999987777654322 121111111122 22222
Q ss_pred cccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCC
Q 016175 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 253 ~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (394)
.+ +..-..|+.+++.-...|...+.+ .-|+++-.++|+. .|...
T Consensus 130 g~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~-sh~~~ 174 (390)
T PRK08366 130 GW--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFIL-SHTYD 174 (390)
T ss_pred CE--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccc-ccccc
Confidence 22 222336888998888888888878 9999999988875 45543
No 159
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=88.32 E-value=5.3 Score=35.64 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=59.0
Q ss_pred hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccc--cccccCc---chhh
Q 016175 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRAAKSP---SYYK 249 (394)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~--~~~~~~~---~~~~ 249 (394)
.-.|.|.+.+. .-.++++..|=|.+| ..-++..|..-+.|+|+|+-+.... .++.. ....... +...
T Consensus 48 ~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (162)
T cd07038 48 GYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK 120 (162)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHH
Confidence 34555666543 234455555777776 4456777889999999998654322 11111 0000000 1111
Q ss_pred hc-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEE
Q 016175 250 RG-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (394)
Q Consensus 250 ~g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (394)
.. .. -...+|. +++.+.+++++|+..+.. +||++|++
T Consensus 121 ~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 121 MFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 11 11 1124553 677888888888888877 89999986
No 160
>PTZ00089 transketolase; Provisional
Probab=86.78 E-value=3.9 Score=44.92 Aligned_cols=109 Identities=20% Similarity=0.154 Sum_probs=67.4
Q ss_pred cCCccc-hhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcch
Q 016175 169 HGIVGA-QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (394)
Q Consensus 169 ~g~lG~-~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~ 247 (394)
.|+-.+ .+.+|.|+|+. +.-.++++.+. .+.+ -.++.+.+++..+|||+||+...+++.+..-....+ +
T Consensus 408 ~GIaEq~mv~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~---i 477 (661)
T PTZ00089 408 FGVREHAMCAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQP---V 477 (661)
T ss_pred eeecHHHHHHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCccc---H
Confidence 444443 34577777762 12234544444 6666 788999999999999999998877665322111111 2
Q ss_pred hhhcC--cccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 248 YKRGD--YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 248 ~~~g~--~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
...+. .+|.+.| .=-|..++..+++.|+.. .++|+.|-+.
T Consensus 478 edia~lR~iPn~~V~~PaD~~E~~~~l~~al~~--~~gP~~irl~ 520 (661)
T PTZ00089 478 ETLALLRATPNLLVIRPADGTETSGAYALALAN--AKTPTILCLS 520 (661)
T ss_pred HHHHHHhcCCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEec
Confidence 22331 1666554 335778888888887742 2799998654
No 161
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=86.64 E-value=6.2 Score=35.60 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=61.5
Q ss_pred cCCccc-hhhHHHHHHHHhhhCCCCCeEEEEEccccc-ccchHHHHHH-HHHHCCCCeEEEEEcCCccccccccccccCc
Q 016175 169 HGIVGA-QIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALN-IAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (394)
Q Consensus 169 ~g~lG~-~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~-~eG~~~Ealn-~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~ 245 (394)
+|+-.+ .+++|+|+|++-+ ...+++..+++=.. .|-..++.+. ..+.+++|+. |+..-+++.+.......+..
T Consensus 53 ~gIaE~~~vg~a~GlA~~G~---~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~ 128 (178)
T PF02779_consen 53 TGIAEQNMVGMAAGLALAGG---LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIE 128 (178)
T ss_dssp --S-HHHHHHHHHHHHHHSS---SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSS
T ss_pred cCcchhhccceeeeeeeccc---ccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccc
Confidence 344433 3567777777631 12455566666443 1234566665 7888999988 55554443322111111112
Q ss_pred chhhhcCcccEEEE-eCCCHHHHHHHHHHHHHHHhh-CCCEEEEEE
Q 016175 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 246 ~~~~~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (394)
+..-+. .+|+++| .=-|..++...++.|++. + ++|++|-..
T Consensus 129 d~~~~~-~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~~ 171 (178)
T PF02779_consen 129 DEAILR-SIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIREP 171 (178)
T ss_dssp HHHHHH-TSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEEE
T ss_pred cccccc-cccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEee
Confidence 222111 2666655 456788999999998873 2 799998654
No 162
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=86.54 E-value=2.9 Score=45.85 Aligned_cols=109 Identities=22% Similarity=0.230 Sum_probs=63.5
Q ss_pred cCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcch
Q 016175 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (394)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~ 247 (394)
.|+-.+. +++|.|+|+.. +.++|+ ..-..+.+ ..++++.+++..++||++|....+++.+.......+ +
T Consensus 401 ~GIaEq~mv~~AaGlA~~g-----G~~p~~-~tf~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~---i 470 (653)
T TIGR00232 401 YGVREFAMGAIMNGIALHG-----GFKPYG-GTFLMFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQP---I 470 (653)
T ss_pred ecccHHHHHHHHHHHHHcC-----CCeEEE-EEhHHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCC---H
Confidence 3444333 35666776531 222332 23335554 678899999999999999998877765432111111 2
Q ss_pred hhhcC--cccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 248 YKRGD--YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 248 ~~~g~--~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
...+. .+|.+.| .=-|..++..+++.|+.. .++|++|-..
T Consensus 471 edia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~--~~gP~~irl~ 513 (653)
T TIGR00232 471 EQLASLRAIPNLSVWRPCDGNETAAAWKYALES--QDGPTALILS 513 (653)
T ss_pred HHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCcEEEEEc
Confidence 22221 1555544 334677888888887742 2799988543
No 163
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=85.71 E-value=7.4 Score=34.92 Aligned_cols=103 Identities=22% Similarity=0.248 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccc-cccccccccCcchhhh-cCc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYKR-GDY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i-~~~~~~~~~~~~~~~~-g~~-~ 254 (394)
.|-|.+.+. +.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-+-.... +... .+. .+.... ... -
T Consensus 50 mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q~--~d~~~l~~~vtk 120 (162)
T cd07037 50 FALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGTGA-NQT--IDQVGLFGDYVR 120 (162)
T ss_pred HHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCCCC-Ccc--cchhhhccceee
Confidence 455555443 3445666666777776 34567778899999999986533221 1100 010 011111 111 0
Q ss_pred cEEEE-eCCC---HHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 255 PGLKV-DGMD---ALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 255 ~~~~V-DG~D---~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
-..+| +..+ +..+.+.+++|+..++. .||++|++-
T Consensus 121 ~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 121 WSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred EEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 11333 2222 22266667777777765 589999863
No 164
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=85.38 E-value=6 Score=43.13 Aligned_cols=110 Identities=13% Similarity=0.209 Sum_probs=62.2
Q ss_pred CcCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHH-HHHHHCCCCeEEEEEcCCccccccccccccCc
Q 016175 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (394)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Eal-n~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~ 245 (394)
..|+-.+. +++|+|+|++ .-+++++++ +.+-+ ..+|-+ +.++..++||++++...++. +..-.......
T Consensus 356 d~GIaEq~~vg~AaGlA~~-----G~~Pvv~~~--a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~ 426 (617)
T TIGR00204 356 DVAIAEQHAVTFAAGMAIE-----GYKPFVAIY--STFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAF 426 (617)
T ss_pred cCCccHHHHHHHHHHHHHC-----CCEEEEEec--HHHHH-HHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccch
Confidence 34444443 4567777753 223444444 44555 455555 66789999999999877763 21111111111
Q ss_pred chhhhcCcccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 246 ~~~~~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
++.-+ ..+|+++| .=-|+.++...++.|+.. .++|++|-..
T Consensus 427 dia~l-r~iPgl~V~~Psd~~e~~~~l~~a~~~--~~~Pv~ir~~ 468 (617)
T TIGR00204 427 DISYL-RCIPNMVIMAPSDENELRQMLYTGYHY--DDGPIAVRYP 468 (617)
T ss_pred HHHHH-hcCCCcEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEEc
Confidence 22111 12677665 445778888888888753 1499998543
No 165
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=85.31 E-value=3.9 Score=47.54 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=47.6
Q ss_pred CcCCccchhhHHHHHHHHhhhCCCCCeEEEEEccccc-ccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccc
Q 016175 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE 238 (394)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~-~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~ 238 (394)
+...||.....++|.+-+. .+..+|+.+|||.+ ..|.. +|.-|...+.+++++|-+|. -+|+..+
T Consensus 493 ~~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~~--alr~AV~~~~nit~kIL~N~avAMTGgQ 559 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGLL--AIRQAIAAGVNITYKILYNDAVAMTGGQ 559 (1186)
T ss_pred eeeccCcchhhheeecccC----CCCCEEEEeccccchhcCHH--HHHHHHhcCCCEEEEEEeCcchhccCCC
Confidence 3466888888899988663 23569999999994 55543 48888888999877776555 5786544
No 166
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=85.26 E-value=5.2 Score=43.83 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=63.3
Q ss_pred CcCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHH-HHHHHCCCCeEEEEEcCCcc-ccccccccccC
Q 016175 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYG-MGTAEWRAAKS 244 (394)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Eal-n~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~ 244 (394)
..|+-.+. +++|+|+|+. .-+++++.+.+ +.+ ..++.+ +.++..++||+|++...++. ...++.. ..
T Consensus 365 d~GIaE~~mvg~AaGlA~~-----G~~P~v~~f~~--Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq--~~ 434 (641)
T PRK12571 365 DVGIAEQHAVTFAAGLAAA-----GLKPFCAVYST--FLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHA--GA 434 (641)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEehHH--HHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCcccc--cc
Confidence 44555443 4567777762 22445555443 444 566766 66889999999999766643 1111111 11
Q ss_pred cchhhhcCcccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 245 ~~~~~~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
.+++-+ ..+|++.| -=-|..+++.+++.|+++ .++|++|-..
T Consensus 435 ~dia~l-r~iPnl~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~~ 477 (641)
T PRK12571 435 FDLAFL-TNLPNMTVMAPRDEAELRHMLRTAAAH--DDGPIAVRFP 477 (641)
T ss_pred HHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEEe
Confidence 122211 12666654 335778888888888752 2799999654
No 167
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=83.29 E-value=11 Score=38.80 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=69.3
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhh-hcC
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGD 252 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~-~g~ 252 (394)
+.+..++|+++| +.++++.+--..++ -.+|.|.+|+-.++|+|+++-|-..+- +........|+.. +..
T Consensus 61 aA~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~~~rd~ 130 (394)
T PRK08367 61 SAISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTISQRDT 130 (394)
T ss_pred HHHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHHhcccc
Confidence 456778888876 34455544333333 478999999999999988876654432 2111111112222 221
Q ss_pred cccEEEEeCCCHHHHHHHHHHHHHHHhh---CCCEEEEEEeeecCCCCC
Q 016175 253 YVPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYRYHGHSM 298 (394)
Q Consensus 253 ~~~~~~VDG~D~~av~~a~~~A~~~ar~---~gP~lIe~~t~R~~GHs~ 298 (394)
.+ +.+-..|+.+++.-...|...+.+ .-|+++-.++||. +|+.
T Consensus 131 g~--~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~ 176 (394)
T PRK08367 131 GW--MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTV 176 (394)
T ss_pred Ce--EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCcc
Confidence 12 222346898888888888888774 3699999999884 6654
No 168
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=82.48 E-value=10 Score=39.24 Aligned_cols=111 Identities=16% Similarity=0.083 Sum_probs=71.0
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcch-hhhcC
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY-YKRGD 252 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~-~~~g~ 252 (394)
+.+..++|++++ +.++++.+--..++ -.+|.|.+|+-..+|+|+++-+-+..-. .......+|+ ..+..
T Consensus 67 ~A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~--~~i~~d~~D~~~~r~~ 136 (407)
T PRK09622 67 AAMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAP--LNVNGDHSDMYLSRDS 136 (407)
T ss_pred HHHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCC--cCCCchHHHHHHHhcC
Confidence 356777888776 33455544333333 4789999999999998888777664321 1111112223 22333
Q ss_pred cccEEEEeCCCHHHHHHHHHHHHHHHhh---CCCEEEEEEeeecCCCC
Q 016175 253 YVPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYRYHGHS 297 (394)
Q Consensus 253 ~~~~~~VDG~D~~av~~a~~~A~~~ar~---~gP~lIe~~t~R~~GHs 297 (394)
.+ +.+.-.++.+++.....|...+.+ .-|+++-.++++ .+|.
T Consensus 137 g~--ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~-~sh~ 181 (407)
T PRK09622 137 GW--ISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL-CSHT 181 (407)
T ss_pred Ce--EEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh-hhCc
Confidence 34 335667899999888888888754 579999988875 3454
No 169
>PRK08611 pyruvate oxidase; Provisional
Probab=82.35 E-value=11 Score=40.50 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=61.3
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhc-Cc-c
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
-.|.|.|.+ .+.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-............+ ..|..... .. -
T Consensus 57 ~mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q--~~d~~~l~~~itk 128 (576)
T PRK08611 57 LAAAAYAKL---TGKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQ--EVNLEKMFEDVAV 128 (576)
T ss_pred HHHHHHHHH---hCCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCCCCcc--ccCHHHHhhcccc
Confidence 345555543 34455677777999887 334677788999999999865432211110011 11121111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (394)
-..+| +++..+.+++.+|+..+.+ .||+.|++-
T Consensus 129 ~~~~v--~~~~~~~~~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 129 YNHQI--MSAENLPEIVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred eeEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 12344 3677888888888887777 899999985
No 170
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=82.19 E-value=5.8 Score=40.35 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=60.5
Q ss_pred ccchhhHHHHHHHHhhhCCCCCeEEEEE---ccc-ccccchHHHHHHHHHHCCCCeEEEEEcCC-cccc-ccccccccCc
Q 016175 172 VGAQIPLGCGLAFAQKYSKDETVTFALY---GDG-AANQGQLFEALNIAALWDLPAILVCENNH-YGMG-TAEWRAAKSP 245 (394)
Q Consensus 172 lG~~lp~A~G~A~A~k~~~~~~~vv~l~---GDG-a~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~-~~~~~~~~~~ 245 (394)
=|.++++|+|+.+|. +++.++++ |=| +.| ..-+|+-...+++|++++|-.-+ ++.. .++.......
T Consensus 35 E~~av~iaaG~~lat-----G~~~~v~mQnSGlGn~vN---~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~ 106 (361)
T TIGR03297 35 EGAAVGLAAGAYLAT-----GKRAAVYMQNSGLGNAVN---PLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRI 106 (361)
T ss_pred chHHHHHHHHHHHhc-----CCccEEEEecCchhhhhh---HHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHH
Confidence 477889999999883 33444443 333 122 11122224568999988887655 3321 1211111100
Q ss_pred chhhhcC-cccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEE
Q 016175 246 SYYKRGD-YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 246 ~~~~~g~-~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (394)
.-.-+-. .+|...++ .+.++...++..|.+++.+ ++|+.|-+.
T Consensus 107 t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 107 TLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 0001112 27777774 3455777778888888777 999888775
No 171
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=81.96 E-value=8.6 Score=40.48 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=59.3
Q ss_pred CcCCccch-hhHHHHHHHHhhhCCCCCeEEEEE-cccccccchHHHHHHHHH--------HCCCCeEEEEEcCCcccccc
Q 016175 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEALNIAA--------LWDLPAILVCENNHYGMGTA 237 (394)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~-GDGa~~eG~~~Ealn~Aa--------~~~LpvI~vv~NN~~~i~~~ 237 (394)
.+|+-.++ +++|+|+|++- -++++.++ .+-.. . .+-.-.|-++ .+++||+|+..|.+..-...
T Consensus 193 d~gIaEq~~vg~AaGlA~~G-----~rPiv~~~~~~f~~-r-a~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~ 265 (464)
T PRK11892 193 DTPITEHGFAGIGVGAAFAG-----LKPIVEFMTFNFAM-Q-AIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA 265 (464)
T ss_pred ecCccHHHHHHHHHHHHhCC-----CEEEEEEehHHHHH-H-HHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC
Confidence 34444433 46777777642 23444443 33332 1 1222346667 89999999988876532111
Q ss_pred ccccccCcchhhhcCc--ccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 238 EWRAAKSPSYYKRGDY--VPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 238 ~~~~~~~~~~~~~g~~--~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
+ .+. ++ .+++ +|+++| -=-|..+.+..++.|+.. ++|++|--.
T Consensus 266 h---hs~-~d--~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~~---~~Pv~ile~ 311 (464)
T PRK11892 266 Q---HSQ-DY--AAWYSHIPGLKVVAPYSAADAKGLLKAAIRD---PNPVIFLEN 311 (464)
T ss_pred c---ccc-CH--HHHHhhCCCCEEEEeCCHHHHHHHHHHHhhC---CCcEEEEec
Confidence 1 111 11 2332 777765 345778888888888754 889987433
No 172
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=81.95 E-value=14 Score=39.91 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc-cccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.+.+. +.-.++++..|=|++| ..-++.-|..-+.|+|+|+-.-.. .++.. ..+. .+..... .+ -
T Consensus 58 ~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q~--~d~~~l~~~~tk 128 (588)
T PRK07525 58 MADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIGQG-GFQE--AEQMPMFEDMTK 128 (588)
T ss_pred HHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCCCC-CCcc--cchhhhhhhhee
Confidence 444544433 3445677777888877 345677788899999998832110 01100 0000 0111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (394)
-..+| .++..+.+.+++|+..++. .||+.|++-
T Consensus 129 ~~~~i--~~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 129 YQEEV--RDPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred EEEEC--CCHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 12444 4677888888888888877 899999986
No 173
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=81.80 E-value=11 Score=40.30 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhc-Cc-cc
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VP 255 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~ 255 (394)
.|-|.|.+ .+.-.++++..|=|.+| .--++.-|..-+.|+|+|+-......-..........+..... .. -.
T Consensus 55 mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~ 128 (554)
T TIGR03254 55 AAAAAGFL---TQKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKA 128 (554)
T ss_pred HHHHHHHH---hCCCEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhee
Confidence 44455544 23446777777999887 3346777889999999988643322100000000011111111 11 11
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 256 ~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
..+|+ ++.++.+.+.+|+..+.+ .||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 129 AYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 34564 678888888888877765 589999986
No 174
>PRK07524 hypothetical protein; Provisional
Probab=81.76 E-value=13 Score=39.49 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=60.7
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY- 253 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~- 253 (394)
-.|.|.|.. .+.-.++++..|=|.+| ..-++.-|..-+.|+|+++-..... .+..........|..... .+
T Consensus 53 ~mAdgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~t 126 (535)
T PRK07524 53 FMADGYARV---SGKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVA 126 (535)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhc
Confidence 344454433 33445677777888887 3456777889999999888533211 111000000001111111 11
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
--..+| +++..+.+.+.+|+..+++ .||+.|++-
T Consensus 127 k~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 127 AFSHTL--MSAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred eeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 112344 4688899999999988876 689999886
No 175
>PRK08266 hypothetical protein; Provisional
Probab=81.49 E-value=12 Score=39.83 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccccccC-cchhhhc-Cc-
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKS-PSYYKRG-DY- 253 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~~~~~-~~~~~~g-~~- 253 (394)
.|.|.+.+. +.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-.-. ..+.... .+... .+..... .+
T Consensus 58 ~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 58 MAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGR-GHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCC-CcceecccHhhHHhhhc
Confidence 555555443 3334666667888887 34567778899999999985321 1111100 00000 1111111 11
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
-...+|+ ++.++.+.+++|+..+.. .||+.|++-.
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~ 167 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPW 167 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCH
Confidence 1124553 577888888888877765 6899999874
No 176
>PRK12753 transketolase; Reviewed
Probab=81.25 E-value=9.2 Score=42.07 Aligned_cols=109 Identities=20% Similarity=0.207 Sum_probs=66.4
Q ss_pred cCCccc-hhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcch
Q 016175 169 HGIVGA-QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (394)
Q Consensus 169 ~g~lG~-~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~ 247 (394)
.|+-.+ .+.+|.|+|+-. .-.++++.+ +.+.+ ..++.+.+++..+|||+||....+++.+..-....+ +
T Consensus 407 ~GIaEq~mv~~aaGlA~~~----G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~---i 476 (663)
T PRK12753 407 YGVREFGMTAIANGIAHHG----GFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQP---V 476 (663)
T ss_pred eeecHHHHHHHHHHHHHhC----CCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCccccc---H
Confidence 344443 346777877621 112333333 36655 789999999999999999998888776432211111 2
Q ss_pred hhhcC--cccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 248 YKRGD--YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 248 ~~~g~--~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
...+. .+|.+.| .=-|..++..+++.|++. .++|+.|-+.
T Consensus 477 edla~lR~iPn~~v~~PaD~~E~~~~~~~al~~--~~gP~~irl~ 519 (663)
T PRK12753 477 EQLASLRLTPNFSTWRPCDQVEAAVAWKLAIER--HNGPTALILS 519 (663)
T ss_pred HHHHHHhcCCCCEEEccCCHHHHHHHHHHHHhc--CCCCEEEEec
Confidence 22331 1565544 234677888888888752 2799888664
No 177
>PRK12754 transketolase; Reviewed
Probab=81.13 E-value=9.6 Score=41.96 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=65.8
Q ss_pred cCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcch
Q 016175 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (394)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~ 247 (394)
.|+-.++ +++|.|+|+-. .-.+.++.+ ..+.+ ..++++.+++..+|||++|....+++.+..-....+ +
T Consensus 407 ~GIaE~~Mv~iaaGlA~~~----G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~---i 476 (663)
T PRK12754 407 YGVREFGMTAIANGIALHG----GFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQP---V 476 (663)
T ss_pred eccchhhHHHHHhhHHhcC----CCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCccc---H
Confidence 4444443 45677777621 112222222 35555 789999999999999999998888776432211111 2
Q ss_pred hhhcC--cccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 248 YKRGD--YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 248 ~~~g~--~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
...+. .+|.+.| .=-|..++..+++.|+.+ .+||+.|-+.
T Consensus 477 Edla~lR~iPn~~V~~PaD~~E~~~~~~~a~~~--~~gP~yirl~ 519 (663)
T PRK12754 477 EQVASLRVTPNMSTWRPCDQVESAVAWKYGVER--QDGPTALILS 519 (663)
T ss_pred HHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhC--CCCCEEEEeC
Confidence 23331 1666554 345677888888887753 2799977554
No 178
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=81.11 E-value=15 Score=39.23 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=60.3
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhh-cCc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR-GDY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~-g~~-~ 254 (394)
.|.|.|.+ .+.-.++++..|=|.+| ..-++.-|-.-+.|+|+|+-.-... +... ..+ +.+.... ... -
T Consensus 54 mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~l~~~vtk 124 (549)
T PRK06457 54 AASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIGHD-YFQ--EVNLTKLFDDVAV 124 (549)
T ss_pred HHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccCCC-ccc--ccchhhhhcccee
Confidence 45555543 34455666777888887 4456777889999999988643221 1110 000 1111111 111 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (394)
-..+| .++..+.+++++|+..+.. .||+.|++-.
T Consensus 125 ~~~~v--~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 125 FNQIL--INPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 12344 4677888888888877777 8999999873
No 179
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=80.34 E-value=13 Score=39.57 Aligned_cols=102 Identities=22% Similarity=0.178 Sum_probs=61.3
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccccccCcchhhhc-Cc-
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKRG-DY- 253 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~~~~~~~~~~~g-~~- 253 (394)
-.|.|.|.+. +.-.++++..|=|.+| ..-++.-|..-+.|+|+++-.-. ..++... .+ +.|..... ..
T Consensus 52 ~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q--~~d~~~~~~~~t 122 (548)
T PRK08978 52 MAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGTDA-FQ--EIDVLGLSLACT 122 (548)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCC-Cc--ccchhccccCce
Confidence 3455555443 4456677777888887 44567778899999998875322 1111110 01 01111111 11
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
-...+|+ +++++...+++|+..++. .||+.|++-
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (548)
T PRK08978 123 KHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIP 158 (548)
T ss_pred eeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 1235564 688888889999988876 489999986
No 180
>PLN02790 transketolase
Probab=80.14 E-value=12 Score=41.16 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=63.8
Q ss_pred cCCccc-hhhHHHHHHHHhhhCC-CCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcc
Q 016175 169 HGIVGA-QIPLGCGLAFAQKYSK-DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (394)
Q Consensus 169 ~g~lG~-~lp~A~G~A~A~k~~~-~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~ 246 (394)
.|+-.+ .+.+|.|+|+. + .-.++++.+. .+.. ..++++.+++..+|||+||....+.+.+..-.- ..+
T Consensus 397 ~GIaEq~mv~~AaGlA~~----G~G~~P~~~tf~--~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~T--Hq~- 466 (654)
T PLN02790 397 FGVREHGMGAICNGIALH----SSGLIPYCATFF--VFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPT--HQP- 466 (654)
T ss_pred eeechHHHHHHHHHHHhc----CCCcEEEEEecH--HHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCC--ccc-
Confidence 444433 34577777753 1 1233443332 2232 577889999999999999998877664321111 111
Q ss_pred hhhhcC--cccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 247 YYKRGD--YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 247 ~~~~g~--~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
+...+. .+|.+.| .=-|..++..+++.|+.. .++|+.|-..
T Consensus 467 iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~--~~gP~~irl~ 510 (654)
T PLN02790 467 IEHLASLRAMPNILMLRPADGNETAGAYKVAVTN--RKRPTVLALS 510 (654)
T ss_pred HHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHc--CCCCEEEEec
Confidence 233332 2666655 334677888888887752 2799888654
No 181
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=79.99 E-value=13 Score=39.91 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=63.9
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc-cccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.| |..|.-.+|++..|=|++| .--.|..|..-+.|+|+|.-.-.. .+++.. +-+.|..... .. -
T Consensus 54 mAdgya---r~TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~~g~~a---fQe~D~~~l~~p~tk 124 (550)
T COG0028 54 AADGYA---RATGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSLIGTDA---FQEVDQVGLFRPITK 124 (550)
T ss_pred HHHHHH---HHcCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccccCcch---hhhcchhhHhhhhhe
Confidence 444554 3456778999999999988 445688888999999887652111 111111 1111222221 11 2
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
..++|. +++++-+.+++|+..+.+ .||++|++-
T Consensus 125 ~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 125 YNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 235564 688999999999988876 489999885
No 182
>PRK07064 hypothetical protein; Provisional
Probab=79.67 E-value=16 Score=38.81 Aligned_cols=105 Identities=19% Similarity=0.107 Sum_probs=60.9
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|.+ .+.-.++++..|=|.+| ..-++.-|..-+.|+|+++-+-. ..+...........+..... .+ -
T Consensus 56 ~A~gyar~---tg~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 129 (544)
T PRK07064 56 MADAHARV---SGGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSK 129 (544)
T ss_pred HHHHHHHh---cCCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcc
Confidence 55565544 33446777777998887 34567778899999999986421 11111100000001222211 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
...+| +++.++.+++++|+..+.. .||+.|++-.
T Consensus 130 ~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 130 AAFRV--RSAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 13456 3677888888888877765 6999999873
No 183
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=79.45 E-value=13 Score=39.83 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|.+ .+.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-.-... .+. ...-+.|..... .. -
T Consensus 57 mAdgYar~---tg~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~l~~~~tk 127 (574)
T PRK07979 57 MADGLARA---TGEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIGY---DAFQECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHH---hCCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccCC---CCCceecHHHHhhcccc
Confidence 45555543 34456777778988887 3345777888899999888542211 111 001111222211 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
...+| ++++++...+++|+..+.. .||++|++-.
T Consensus 128 ~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 128 HSFLV--KQTEDIPQVLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 13455 3788899999999988876 5899999864
No 184
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=79.38 E-value=11 Score=41.29 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=61.2
Q ss_pred CcCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHH-HHHHHHCCCCeEEEEEcCCcc-ccccccccccC
Q 016175 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA-LNIAALWDLPAILVCENNHYG-MGTAEWRAAKS 244 (394)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ea-ln~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~ 244 (394)
..|+-.+. +++|+|+|+. .-+++++++. .+-+ ..++- .+.++..++||+|++...++. ...++.. ..
T Consensus 403 dvGIAEq~~Vg~AaGLA~~-----G~rPvv~~fs--~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~--~~ 472 (641)
T PLN02234 403 DVGIAEQHAVTFAAGLACE-----GLKPFCTIYS--SFMQ-RAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHC--GA 472 (641)
T ss_pred CCCcCHHHHHHHHHHHHHC-----CCeEEEEehH--HHHH-HHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccc--cc
Confidence 34444333 4556676653 2344555543 3444 34443 467789999999999877643 1111111 11
Q ss_pred cchhhhcCcccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCC
Q 016175 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (394)
Q Consensus 245 ~~~~~~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (394)
.+..- ...+|++.| .=-|..++..+++.|... .++|++| ...|+..
T Consensus 473 ~Dia~-lr~iPnl~V~~Psd~~E~~~~l~~a~~~--~~~Pv~i--r~~R~~~ 519 (641)
T PLN02234 473 FDVTF-MACLPNMIVMAPSDEAELFNMVATAAAI--DDRPSCF--RYHRGNG 519 (641)
T ss_pred HHHHH-HhcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEE--Eeecccc
Confidence 11111 112666655 345778888888776643 2689988 4445443
No 185
>PRK11269 glyoxylate carboligase; Provisional
Probab=78.98 E-value=18 Score=38.94 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|.+.. +.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-+-... .+.. ..+ ..+..... .. -
T Consensus 57 mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~~d~~~l~~~itk 128 (591)
T PRK11269 57 MAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHKE-DFQ--AVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC-ccc--ccChhhHhhccee
Confidence 4445544320 3445666677888887 3346777888999999888643321 1110 001 11111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
-..+| .++.++..++++|+..+++ .||+.|++-.
T Consensus 129 ~s~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 129 WAVTV--REPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred EEEEc--CCHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 12445 4688888999999988876 5899999873
No 186
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=78.32 E-value=15 Score=39.72 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=61.6
Q ss_pred CcCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHH-HHHHHHHCCCCeEEEEEcCCcccc-ccccccccC
Q 016175 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHYGMG-TAEWRAAKS 244 (394)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~E-aln~Aa~~~LpvI~vv~NN~~~i~-~~~~~~~~~ 244 (394)
..|+-.++ +++|+|+|+. | -.+++..+. .+.+ ..+| ..+.++..++|+++++...++.-. .++.. ..
T Consensus 325 ~~GIaE~~mvg~A~GlA~~----G-~~p~~~~f~--~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~ 394 (580)
T PRK05444 325 DVGIAEQHAVTFAAGLATE----G-LKPVVAIYS--TFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GA 394 (580)
T ss_pred CCChHHHHHHHHHHHHHHC----C-CeeEEEeeH--HHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--cc
Confidence 34444443 3567777763 2 234444444 4544 5566 455578999999999986665311 11111 11
Q ss_pred cchhhhcCcccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 245 ~~~~~~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
.+++-+ ..+|++.| -=-|+.++..+++.|+.. .++|++|-..
T Consensus 395 edia~l-r~iP~l~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~~ 437 (580)
T PRK05444 395 FDLSYL-RCIPNMVIMAPSDENELRQMLYTALAY--DDGPIAIRYP 437 (580)
T ss_pred HHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEec
Confidence 122111 12666654 445788888888888853 2789988553
No 187
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=78.23 E-value=21 Score=38.37 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=58.1
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.+.+ .+.-.++++..|=|.+| ..-++..|..-+.|+|+|.-.-. ..++... .+. .+..... .. -
T Consensus 54 ~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~~~~~-~Q~--~d~~~l~~~vtk 124 (579)
T TIGR03457 54 MADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTIGLGG-FQE--ADQLPMFQEFTK 124 (579)
T ss_pred HHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccCCCCC-Ccc--cchhhhhhccee
Confidence 44455443 34445666777888887 33467778899999998873211 1111100 000 0111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (394)
-..+| .++..+.+.+++|+..+.. +||+.|++-
T Consensus 125 ~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 125 YQGHV--RHPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred EEEec--CCHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 12344 4677888888888888777 799999986
No 188
>PRK05899 transketolase; Reviewed
Probab=78.19 E-value=12 Score=40.83 Aligned_cols=106 Identities=25% Similarity=0.306 Sum_probs=63.0
Q ss_pred cCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcccc--ccccccccCc
Q 016175 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKSP 245 (394)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~--~~~~~~~~~~ 245 (394)
.|+-.++ +++|+|+|+. |.-+++++.+ ..+. .-.++++.+++..++|++++....+++.+ .++. +.
T Consensus 372 ~GIaE~~~vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q~--- 440 (624)
T PRK05899 372 YGVREFAMAAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-QP--- 440 (624)
T ss_pred eChhHHHHHHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-cc---
Confidence 3443333 3456666643 2123333322 3443 46888899999999999999988776532 2222 11
Q ss_pred chhhhcC--cccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEE
Q 016175 246 SYYKRGD--YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (394)
Q Consensus 246 ~~~~~g~--~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (394)
+...+. .+|++.| .=-|..++..+++.|++. .++|++|-.
T Consensus 441 -~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~--~~~P~~ir~ 483 (624)
T PRK05899 441 -VEQLASLRAIPNLTVIRPADANETAAAWKYALER--KDGPSALVL 483 (624)
T ss_pred -HHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHc--CCCCEEEEE
Confidence 222221 2666654 445778888888888752 268998877
No 189
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=77.72 E-value=17 Score=38.91 Aligned_cols=103 Identities=19% Similarity=0.181 Sum_probs=60.5
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY- 253 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~- 253 (394)
-.|.|.+.+. +.-.++++..|=|.+| ..-++.-|..-+.|+|+|.-..... +... ..+. .|..... ..
T Consensus 67 ~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~-~~q~--~d~~~l~~~~t 137 (571)
T PRK07710 67 HAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGSD-AFQE--ADIMGITMPVT 137 (571)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCCC-Cccc--cchhhhhhccc
Confidence 4555555443 3445666667888877 3455777888899999887543321 1110 0010 1111111 11
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
-...+| .+++.+.+.+++|+..++. .||+.|++-.
T Consensus 138 k~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 138 KHNYQV--RKASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred ceEEec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 112344 4678888889999988776 4999999874
No 190
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=77.56 E-value=15 Score=37.30 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHhhhCCCCCeEEEEE-cccccccchHHHH-HHHHHHCC--------CCeEEEEEcCC-cccccccccccc
Q 016175 175 QIPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEA-LNIAALWD--------LPAILVCENNH-YGMGTAEWRAAK 243 (394)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~l~-GDGa~~eG~~~Ea-ln~Aa~~~--------LpvI~vv~NN~-~~i~~~~~~~~~ 243 (394)
.++.|+|+|++- .+++++++ .|=. + ..+|- .+-++.++ +||+|+..+.. ++.+. +..
T Consensus 86 ~vg~AaGlA~~G-----~~P~v~~~~~~f~--~-ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~-tH~--- 153 (356)
T PLN02683 86 FTGIGVGAAYAG-----LKPVVEFMTFNFS--M-QAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGA-QHS--- 153 (356)
T ss_pred HHHHHHHHHHCC-----CEEEEEEehhhHH--H-HHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCC-ccc---
Confidence 456677777642 23444443 3322 1 23343 45566665 99999987732 23321 111
Q ss_pred CcchhhhcCcccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEE
Q 016175 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (394)
Q Consensus 244 ~~~~~~~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (394)
..+.+-+ ..+|++.| .=-|..+++.+++.|+.. ++|++|-.
T Consensus 154 ~~~~a~l-r~iPnl~V~~Pad~~e~~~~l~~a~~~---~gPv~ir~ 195 (356)
T PLN02683 154 QCFAAWY-SSVPGLKVLAPYSSEDARGLLKAAIRD---PDPVVFLE 195 (356)
T ss_pred cCHHHHH-hcCCCCEEEEeCCHHHHHHHHHHHHhC---CCcEEEEE
Confidence 1111111 12676655 345788888888887754 88999853
No 191
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=77.38 E-value=23 Score=37.98 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccc-cccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i-~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.+.+ .+.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-.-.... ..... .....+..... .. -
T Consensus 62 mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~-~~q~~d~~~~~~~~tk 134 (569)
T PRK09259 62 AAAAAGFL---TQKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQG-DYEELDQLNAAKPFCK 134 (569)
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCC-Cccccchhhhhhhhee
Confidence 34454443 23445667777888887 33467778899999999885432210 00000 00011111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
...+|+ ++.++.+.+.+|+..+.+ .||+.|++-
T Consensus 135 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 135 AAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 124553 688888888888888766 589999986
No 192
>PRK08322 acetolactate synthase; Reviewed
Probab=76.76 E-value=21 Score=37.97 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhh-cCc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR-GDY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~-g~~-~ 254 (394)
.|.|.|.+ .+.-.++++..|=|.+| ..-++.-|-.-+.|+|+|+-+-... +... ..+ ..|.... ... -
T Consensus 53 ~A~gyar~---tg~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk 123 (547)
T PRK08322 53 MAATYGRL---TGKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSKQG-SFQ--IVDVVAMMAPLTK 123 (547)
T ss_pred HHHHHHHh---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccCCC-ccc--cccHHHHhhhhee
Confidence 45555544 33445666667888877 3456777888999999888542211 1110 001 1111111 111 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
-..+| +++..+.+.+.+|+..+.+ .||+.|++-.
T Consensus 124 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 124 WTRQI--VSPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 12445 4688888888888888776 5899999873
No 193
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=76.40 E-value=21 Score=38.12 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhh-cCc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR-GDY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~-g~~-~ 254 (394)
.|.|.|.+ .+.-.+++|..|=|.+| ..-++.-|-.-+.|||+|.-.-... .+.. ..+. .|.... ..+ -
T Consensus 61 ~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q~--~d~~~l~~~~tk 131 (557)
T PRK08199 61 MAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRERE-AFQE--IDYRRMFGPMAK 131 (557)
T ss_pred HHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCC-cccc--cCHHHhhhhhhc
Confidence 45555543 33445666777888887 4456777888999999988532211 1110 0011 111111 111 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
-..+| ++++++.+.+.+|+..+.+ .||+.|++-
T Consensus 132 ~~~~v--~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 132 WVAEI--DDAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred eeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 12445 5788888889999988776 589999886
No 194
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.32 E-value=23 Score=38.05 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhc-Cc-cc
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VP 255 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~ 255 (394)
.|-|.|.+ .+.-.++++..|=|.+| ..-++..|-.-+.|+|+|.-............+ +.+..... .. -.
T Consensus 57 mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQ--ETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCCCccc--ccchhhhhhcccee
Confidence 45555543 34446777777888887 345677788999999998854332110000000 11222111 11 11
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 256 ~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
..+|+ ++..+.+.+++|+..+.+ .||+.|++-.
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPK 163 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 34554 688888889999888776 5899999864
No 195
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=76.24 E-value=22 Score=38.04 Aligned_cols=102 Identities=22% Similarity=0.110 Sum_probs=59.4
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY- 253 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~- 253 (394)
-.|.|.|.. .+.-.++++..|=|.+| ..-++.-|-.-+.|+|+|.-.-... ++... .+. .|..... ..
T Consensus 57 ~~Adgyar~---tg~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-~q~--~d~~~i~~~~t 127 (572)
T PRK06456 57 HAADGYARA---SGVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGKMA-FQE--ADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHh---hCCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCCCC-ccc--cchhhhhhccc
Confidence 345555543 33444566667988887 3446777888999999887532211 11100 000 1111111 11
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
--..+| ++++++.+.+.+|+..+++ .||+.|++-
T Consensus 128 k~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 128 KYVIGI--KRIDEIPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred eeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 112445 4688888888888888776 599999986
No 196
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.07 E-value=23 Score=38.11 Aligned_cols=101 Identities=22% Similarity=0.229 Sum_probs=60.3
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|.. .+.-.++++..|=|.+| ..-++.-|-.-+.|+|+|+-..... .... ...+.+..... .. -
T Consensus 67 mAdgyar~---tg~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~~d~~~l~~~itk 137 (570)
T PRK06725 67 AAEGYARA---SGKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIGKD---GFQEADVVGITVPVTK 137 (570)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCcccccCC---CCcccchhhhhhccce
Confidence 45555543 34445677777888877 3445667778899999888532211 1110 01011121111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
-..+|+ +++.+.+.+++|+..+++ .||+.|++-
T Consensus 138 ~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 138 HNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence 124553 688899999999988877 589999986
No 197
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=75.79 E-value=13 Score=40.30 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=62.0
Q ss_pred CcCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHH-HHHHHHHCCCCeEEEEEcCCccccccccccccCc
Q 016175 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (394)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~E-aln~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~ 245 (394)
..|+-.+. +++|+|+|+. | -+++++.+.+= -+ ..++ -.+-++..++||+|++...++.-..++.. .
T Consensus 324 d~GIaEq~~v~~AaGlA~~----G-~~Pvv~~fs~F--l~-ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~--~-- 391 (581)
T PRK12315 324 DVGIAEQESVAFASGIAAN----G-ARPVIFVNSTF--LQ-RAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHL--G-- 391 (581)
T ss_pred CCCchHHHHHHHHHHHHHC----c-CeEEEEeeHHH--HH-HHHHHHHHHHHhcCCCEEEEEECCcccCCCcccc--c--
Confidence 34444433 4567777753 2 34555666663 33 2344 44557889999999998665542112111 1
Q ss_pred chhhhcC--cccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEE
Q 016175 246 SYYKRGD--YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (394)
Q Consensus 246 ~~~~~g~--~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (394)
....+. .+|++.| ---|..++..+++.|+.. .++|++|-.
T Consensus 392 -~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~--~~gP~~ir~ 434 (581)
T PRK12315 392 -IFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQ--HEHPVAIRV 434 (581)
T ss_pred -cHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhC--CCCcEEEEE
Confidence 122232 2677665 445788888888888752 268999866
No 198
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=75.76 E-value=17 Score=40.09 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=63.5
Q ss_pred CcCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHH-HHHHHHHCCCCeEEEEEcCCccc-cccccccccC
Q 016175 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHYGM-GTAEWRAAKS 244 (394)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~E-aln~Aa~~~LpvI~vv~NN~~~i-~~~~~~~~~~ 244 (394)
..|+-.+. +++|+|+|+. .-+++++++.+ +-+ ..++ -.+.++..++||+|++...++.- ..++.. ..
T Consensus 402 dvGIAEq~~vg~AaGLA~~-----G~kPvv~~fs~--Fl~-RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~--~~ 471 (677)
T PLN02582 402 DVGIAEQHAVTFAAGLACE-----GLKPFCAIYSS--FLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GA 471 (677)
T ss_pred ccCcCHHHHHHHHHHHHHC-----CCeEEEEecHH--HHH-HHHHHHHHHHHhcCCCEEEEEECCCcccCCCCccc--cc
Confidence 34554433 4567777753 23456666553 444 4555 45777899999999998766531 111111 11
Q ss_pred cchhhhcCcccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecC
Q 016175 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (394)
Q Consensus 245 ~~~~~~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (394)
.|++-. ..+|++.| .=-|..+++.+++.|+.. .++|++|-. .|+.
T Consensus 472 ~Dia~l-r~iPnl~V~~Psd~~E~~~~l~~al~~--~~gPv~IR~--pr~~ 517 (677)
T PLN02582 472 FDVTYM-ACLPNMVVMAPSDEAELFHMVATAAAI--DDRPSCFRY--PRGN 517 (677)
T ss_pred HHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEE--ecCC
Confidence 122111 12666655 345777888888887753 259998854 3544
No 199
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=75.74 E-value=25 Score=37.41 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=55.4
Q ss_pred CCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-ccEEEEeCCCHH
Q 016175 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDAL 265 (394)
Q Consensus 189 ~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~ 265 (394)
.+.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-.-... .... .....+..... .. --..++ +++.
T Consensus 59 tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~~d~~~~~~~~tk~~~~i--~~~~ 130 (539)
T TIGR02418 59 TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLLKL---THQSMDNVALFRPITKYSAEV--QDPD 130 (539)
T ss_pred hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccccC---cccccchhhhhhcceeeeeec--CCHH
Confidence 34446677777888877 3446777889999999988632211 1100 00011111111 11 112344 4788
Q ss_pred HHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 266 AVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 266 av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
++.+.+.+|+..+.+ .||+.|++-.
T Consensus 131 ~~~~~~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 131 ALSEVVANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCh
Confidence 888888888887766 5899999863
No 200
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=75.31 E-value=26 Score=38.01 Aligned_cols=102 Identities=23% Similarity=0.241 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|.+ .+.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-.-... ++.. ...+.|..... .+ -
T Consensus 84 ~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~~~---~~q~~d~~~l~~~~tk 154 (612)
T PRK07789 84 AAEGYAQA---TGRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIGTD---AFQEADIVGITMPITK 154 (612)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC---cCcccchhhhhhccee
Confidence 44555543 23455677777888877 3445777888899999888532211 1110 00011111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
...+| +++..+.+.+.+|+..+++ .||++|++-.
T Consensus 155 ~s~~v--~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 155 HNFLV--TDADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred EEEEc--CCHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 12445 3788888899999988876 5899999863
No 201
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=75.30 E-value=29 Score=37.28 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=54.9
Q ss_pred CCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc-cccccccccccCcchhhh-cCc-ccEEEEeCCCHH
Q 016175 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR-GDY-VPGLKVDGMDAL 265 (394)
Q Consensus 189 ~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i~~~~~~~~~~~~~~~~-g~~-~~~~~VDG~D~~ 265 (394)
.+.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-.-.. .++... .+ ..+.... ... --..+| .++.
T Consensus 61 tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~-~q--~id~~~~~~~vtk~~~~v--~~~~ 132 (575)
T TIGR02720 61 TGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMNMDT-FQ--EMNENPIYADVAVYNRTA--MTAE 132 (575)
T ss_pred hCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCC-cc--eechhhhhhhcceEEEEe--CCHH
Confidence 34456777777888877 345677788899999998864321 111110 00 0011111 111 101334 3466
Q ss_pred HHHHHHHHHHHHHhh-CCCEEEEEEee
Q 016175 266 AVKQACKFAKEHALK-NGPMILEMDTY 291 (394)
Q Consensus 266 av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (394)
.+.+.+.+|+..+.+ .||+.|++-..
T Consensus 133 ~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 133 SLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 777777777777666 89999998743
No 202
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=75.03 E-value=24 Score=38.26 Aligned_cols=101 Identities=20% Similarity=0.261 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc-cccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|.. .+.-.++++..|=|++| ..-+|--|..-+.|+|+|.-+-.. .+++.. .-+.+..... .. -
T Consensus 75 aA~gyar~---tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~---~Qe~d~~~~~~~vtk 145 (616)
T PRK07418 75 AADGYARA---TGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAIGTDA---FQETDIFGITLPIVK 145 (616)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCCCC---cccccHHHHhhhcce
Confidence 44455433 34455667777888887 334677788999999988754221 111110 0011111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
...+|+ +++++.+++.+|+..+.+ .||++|++-
T Consensus 146 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 146 HSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 124553 688888889999988876 499999876
No 203
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=74.97 E-value=24 Score=35.94 Aligned_cols=110 Identities=21% Similarity=0.135 Sum_probs=67.5
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcccc-ccccccccCcchhhhcC
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG-TAEWRAAKSPSYYKRGD 252 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~-~~~~~~~~~~~~~~~g~ 252 (394)
..++.++|+++|- .+..-...|.|-+ -.+|++-+|+-..+|+|+++-+...... -+..... .+-...+..
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq-~D~~~~r~~ 128 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQ-SDLMAARDT 128 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHH---HHHHHHHHHHhccCCeEEEEeccCcCCCcccccccH-HHHHHHHcc
Confidence 5677888888873 2344445555543 3689999999999998887777654321 1111111 111222322
Q ss_pred cccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecC
Q 016175 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (394)
Q Consensus 253 ~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (394)
.++.+... |+.+.+.-.-.|...+.+ .-|+++-.+-++..
T Consensus 129 g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 129 GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 34334333 677777666677777766 88999998877653
No 204
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=74.77 E-value=26 Score=37.43 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc-cccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|... +.-.++++..|=|.+| ..-++.-|..-+.|||+|+-.-.. ..+.. ..+ ..|..... .. .
T Consensus 54 ~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk 124 (558)
T TIGR00118 54 AADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIGSD-AFQ--EADILGITMPITK 124 (558)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccCCC-CCc--ccChhhhhcCccc
Confidence 455555433 3445777777888877 345677788999999988753211 11100 000 01111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
...+|+ ++.++.+.+.+|+..+.. .||+.|++-
T Consensus 125 ~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 125 HSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 234553 678888888888887766 589999986
No 205
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=74.36 E-value=25 Score=37.80 Aligned_cols=103 Identities=18% Similarity=0.127 Sum_probs=59.6
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY- 253 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~- 253 (394)
-.|.|.+.+. +.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-.-... ++.. ..+ ..|..... ..
T Consensus 52 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~~d~~~l~~~~t 122 (586)
T PRK06276 52 HAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLIGND-AFQ--EIDALGIFMPIT 122 (586)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCC-CCc--cccHhhHHhhhc
Confidence 3455555432 3445677777888877 3456777889999999887432211 1100 000 01111111 11
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
-...+| +++.++.+.+.+|+..+.. .||+.|++-.
T Consensus 123 k~s~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 123 KHNFQI--KKPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred ceEEec--CCHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 112455 3677888888888888776 5899999873
No 206
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=73.84 E-value=18 Score=39.97 Aligned_cols=108 Identities=9% Similarity=0.074 Sum_probs=62.1
Q ss_pred CcCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHH-HHHHHHCCCCeEEEEEcCCccccccccccccCc
Q 016175 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA-LNIAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (394)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ea-ln~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~ 245 (394)
..|+-.+. +..|+|+|.. .-+++++++. .+-+ ..++- .+-++..++||+||+..-++. .... .+...
T Consensus 427 DvGIAEQhaVt~AAGLA~~-----G~kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aGlv--g~DG-~TH~g 495 (701)
T PLN02225 427 NVGMAEQHAVTFSAGLSSG-----GLKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAGLV--GSDG-PVQCG 495 (701)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCccC--CCCC-ccccc
Confidence 34554443 4566777753 2356777774 5555 44453 444789999999999865532 1111 01111
Q ss_pred chhhhcC--cccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 246 SYYKRGD--YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 246 ~~~~~g~--~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
..+.+. .+|++.| -=-|..++...+++|... .++|++|-.-
T Consensus 496 -~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~~--~~gPv~IR~p 539 (701)
T PLN02225 496 -AFDIAFMSSLPNMIAMAPADEDELVNMVATAAYV--TDRPVCFRFP 539 (701)
T ss_pred -cHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCCEEEEec
Confidence 122232 2777665 345788888888877642 2689998553
No 207
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=73.76 E-value=19 Score=35.68 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=64.7
Q ss_pred CcCCccch-hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHH-HHCCCCeEEEEEcCCccccccccccccCc
Q 016175 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA-ALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (394)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~A-a~~~LpvI~vv~NN~~~i~~~~~~~~~~~ 245 (394)
+.|+..+. ++.|+|+|++-| .+. .++=+.+-.+-.||=+.++ +..+|||-+|+.+-++..+..........
T Consensus 53 NvGIaEQ~mvg~AAGLA~~Gk-----~Pf--v~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~E 125 (312)
T COG3958 53 NVGIAEQDMVGTAAGLALAGK-----KPF--VSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALE 125 (312)
T ss_pred ecchHHHHHHHHHHHHHhcCC-----Cce--eechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHH
Confidence 56666654 578888887642 233 3445677777888877665 56789999999988866432211111112
Q ss_pred chhh-hcCcccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEE
Q 016175 246 SYYK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (394)
Q Consensus 246 ~~~~-~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (394)
|++- |+ +|-..| +--|.....+++..+.++ +||+.+-+
T Consensus 126 DiaimR~--lpn~~V~~P~D~v~~~~i~~~~~~~---~GP~Y~Rl 165 (312)
T COG3958 126 DIAIMRG--LPNMTVIAPADAVETRAILDQIADY---KGPVYMRL 165 (312)
T ss_pred HHHHHhc--CCCceEEccCcHHHHHHHHHHHHhc---CCCEEEEe
Confidence 2221 22 333332 445666666666666555 99998744
No 208
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=73.25 E-value=32 Score=36.92 Aligned_cols=102 Identities=18% Similarity=0.075 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|.+ .+.-.++++..|=|++| ..-++.-|-.-+.|||+|+-.-... .+... .+ +.+..... .. -
T Consensus 64 ~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-~Q--~~d~~~l~~~vtk 134 (578)
T PRK06112 64 MADGYARV---SGKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTDRNA-FQ--ELDHIALFQSCTK 134 (578)
T ss_pred HHHHHHHH---hCCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCC-cc--ccChhhhhccccc
Confidence 44555544 34455667777888876 3456777889999999988432211 11000 00 01111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
...+| .+++.+.+.+++|+..+++ .||+.|++-.
T Consensus 135 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 135 WVRRV--TVAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 12345 3678888888888888776 4899999863
No 209
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=73.16 E-value=30 Score=36.97 Aligned_cols=101 Identities=23% Similarity=0.227 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|.+. +.-.++++..|=|.+| ..-++.-|..-+.|+|+|.-.-... .+.. ..+ +-|..... .. -
T Consensus 66 ~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~~tk 136 (564)
T PRK08155 66 IAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIGTD-AFQ--EVDTYGISIPITK 136 (564)
T ss_pred HHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCcccccCC-Ccc--ccchhhhhhccce
Confidence 455666543 3344566666888877 3346777889999999887532211 1110 000 01111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
-..+|+ ++..+...+++|+..+++ .||+.|++-
T Consensus 137 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 137 HNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 124453 688888889999988776 499999995
No 210
>PRK07586 hypothetical protein; Validated
Probab=73.04 E-value=30 Score=36.43 Aligned_cols=102 Identities=15% Similarity=-0.011 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|-|.|.+ .+.-.++++..|=|.+| ..-++..|..-+.|+|+|+-.-... ..... .+ ..|..... .. -
T Consensus 54 mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~-~q--~~d~~~~~~~vtk 124 (514)
T PRK07586 54 AADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRKYDA-PL--TSDIEALARPVSG 124 (514)
T ss_pred HHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccCCCc-cc--ccchhhhhccccc
Confidence 45555543 33445677777888876 3334666888999999988542211 11100 00 01222211 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
-..+| .++..+.+.+++|+..++. .||++|++-.
T Consensus 125 ~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 125 WVRRS--ESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred eeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 12344 3678888888888888776 5899999874
No 211
>PLN02470 acetolactate synthase
Probab=72.66 E-value=32 Score=37.06 Aligned_cols=103 Identities=23% Similarity=0.213 Sum_probs=61.6
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY- 253 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~- 253 (394)
-.|.|.|.+. +.-.++++..|=|.+| ..-++.-|-.-+.|+|+|.-.-... +... ..-+.+..... ..
T Consensus 65 ~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~~d~~~l~~~~t 135 (585)
T PLN02470 65 FAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIGTD---AFQETPIVEVTRSIT 135 (585)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcCCC---cCcccchhhhhhhhe
Confidence 3455665543 3445777777888887 3456777888999999887532211 1110 00001111111 11
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
-...+| +++.++.+.+.+|+..+++ .||+.|++-.
T Consensus 136 k~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 136 KHNYLV--MDVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred EEEEEc--CCHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 112445 4788999999999988876 5999999863
No 212
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=72.35 E-value=34 Score=36.58 Aligned_cols=102 Identities=22% Similarity=0.204 Sum_probs=59.1
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY- 253 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~- 253 (394)
-.|.|.+.+. +.-.++++..|=|.+| ..-++.-|-.-+.|+|+|.-.-... ++. ....+.+..... ..
T Consensus 59 ~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~it 129 (561)
T PRK06048 59 HAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMIGN---DAFQEADITGITMPIT 129 (561)
T ss_pred HHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC---CCccccchhhhccCcc
Confidence 3455555443 4455677777888887 3456777888999998887422111 110 000011111111 11
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
-...+| .++.++.+.+.+|+..+++ .||+.|++-
T Consensus 130 k~s~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 130 KHNYLV--QDAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred eEEEEe--CCHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 112345 4678888888888887776 589999996
No 213
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=71.81 E-value=31 Score=36.55 Aligned_cols=104 Identities=16% Similarity=0.092 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhh-cCc-cc
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR-GDY-VP 255 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~-g~~-~~ 255 (394)
.|.|.|.+ .+.-.++++..|=|.+| ..-++.-|..-+.|+|+|+-.-.+........+ ...+.... ..+ --
T Consensus 63 ~Adgyar~---tg~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~ 135 (530)
T PRK07092 63 MADGYAQA---TGNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKW 135 (530)
T ss_pred HHHHHHHH---hCCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccc
Confidence 55565543 34455666667888775 445677788899999988754322210000000 00111111 111 11
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 256 ~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
..+| .++..+.+.+.+|+..+++ .||+.|++-.
T Consensus 136 ~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 136 SIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccH
Confidence 2344 5688888889999988876 4899999873
No 214
>PRK06154 hypothetical protein; Provisional
Probab=71.30 E-value=20 Score=38.44 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=52.7
Q ss_pred CeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhh-cCc-ccEEEEeCCCHHHHHH
Q 016175 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR-GDY-VPGLKVDGMDALAVKQ 269 (394)
Q Consensus 193 ~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~-g~~-~~~~~VDG~D~~av~~ 269 (394)
.++++..|=|.+| ..-++.-|..-+.|||+|+-..... ..... ..+.... ... -...+| .++..+.+
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~-----~~d~~~~~~~vtk~~~~v--~~~~~~~~ 152 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTDVAP-----NFESLRNYRHITKWCEQV--TLPDEVPE 152 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccccCCC-----CcchhhhHhhcceeEEEC--CCHHHHHH
Confidence 4455556888877 3456777888999999998533211 11000 0011110 111 112344 36788888
Q ss_pred HHHHHHHHHhh--CCCEEEEEEee
Q 016175 270 ACKFAKEHALK--NGPMILEMDTY 291 (394)
Q Consensus 270 a~~~A~~~ar~--~gP~lIe~~t~ 291 (394)
.+++|+..+++ .||++|++-.-
T Consensus 153 ~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 153 LMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHHHHhcCCCceEEEecchH
Confidence 88888888876 68999998743
No 215
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=71.28 E-value=33 Score=37.08 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=54.5
Q ss_pred CCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHHHHH
Q 016175 192 ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALAVKQ 269 (394)
Q Consensus 192 ~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~av~~ 269 (394)
-.++++..|=|++| ..-++.-|..-+.|||+|+-.-......... ....|..... .. --..+|. ++.++.+
T Consensus 68 ~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~--~q~~D~~~~~~~vtk~~~~v~--~~~~i~~ 140 (588)
T TIGR01504 68 IGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHKED--FQAVDIAAIAKPVSKMAVTVR--EAALVPR 140 (588)
T ss_pred eEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCc--ccccCHHHHhhhhceEEEEcC--CHHHHHH
Confidence 34555566888877 3345777888999999998543322110000 0011111111 11 1124453 6888889
Q ss_pred HHHHHHHHHhh--CCCEEEEEEe
Q 016175 270 ACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 270 a~~~A~~~ar~--~gP~lIe~~t 290 (394)
.+++|+..++. .||++|++-.
T Consensus 141 ~i~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 141 VLQQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred HHHHHHHHHccCCCCeEEEEeCc
Confidence 99999988876 5899999864
No 216
>PRK08617 acetolactate synthase; Reviewed
Probab=70.41 E-value=29 Score=36.94 Aligned_cols=93 Identities=14% Similarity=0.050 Sum_probs=54.8
Q ss_pred CCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc-cccccccccccCcchhhh-cCc-ccEEEEeCCCHHH
Q 016175 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR-GDY-VPGLKVDGMDALA 266 (394)
Q Consensus 190 ~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i~~~~~~~~~~~~~~~~-g~~-~~~~~VDG~D~~a 266 (394)
+.-.++++..|=|.+| ..-++.-|..-+.|+|+|.-.... .++... .+. .+.... ..+ -...+| +++++
T Consensus 66 g~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~~~-~q~--~d~~~l~~~~tk~~~~v--~~~~~ 137 (552)
T PRK08617 66 GKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLKRT-HQS--MDNVALFRPITKYSAEV--QDPDN 137 (552)
T ss_pred CCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCCCC-ccc--cchhhhhhhhcceEEEe--CCHHH
Confidence 3445666667888887 334577788899999988753221 111110 000 011111 111 112455 46888
Q ss_pred HHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 267 VKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 267 v~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
+.+++++|+..+.+ .||+.|++-.
T Consensus 138 ~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 138 LSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred HHHHHHHHHHHHccCCCCcEEEeChh
Confidence 88889999887766 5899999863
No 217
>PRK12474 hypothetical protein; Provisional
Probab=69.69 E-value=42 Score=35.51 Aligned_cols=102 Identities=18% Similarity=0.059 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|-|.|.+ .+.-.++++..|=|++| ..-++..|..-+.|+|+|+-..... .+... .-..+..... .. -
T Consensus 58 mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~---~q~~d~~~~~~~vtk 128 (518)
T PRK12474 58 AADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQYDA---PLTSDIDGFARPVSR 128 (518)
T ss_pred HHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCCCC---ccccCHHHhhhcccc
Confidence 44455543 34456777777999876 3345666888899999888542211 11100 0001222211 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
...+| .++.++.+++++|+..+.+ .||++|++-.
T Consensus 129 ~~~~v--~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~ 164 (518)
T PRK12474 129 WVHRS--ASAGAVDSDVARAVQAAQSAPGGIATLIMPA 164 (518)
T ss_pred eeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 12344 4688888888888887766 5899999863
No 218
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=69.18 E-value=16 Score=39.76 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=62.5
Q ss_pred cCCccchhhHH-HHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcch
Q 016175 169 HGIVGAQIPLG-CGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (394)
Q Consensus 169 ~g~lG~~lp~A-~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~ 247 (394)
.|+=..+++.+ -|+|+---+ .+=.-++.+|-| -..-|+.+|++.++|++||.....++.+.......+...+
T Consensus 407 ~GVREf~M~AimNGialhGg~-~pyggTFlvFsd------Y~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqL 479 (663)
T COG0021 407 FGVREFAMAAIMNGIALHGGF-IPYGGTFLVFSD------YARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQL 479 (663)
T ss_pred EeeHHHHHHHHHHhHHHhcCc-eeecceehhhHh------hhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHH
Confidence 34444555443 466653211 111224444444 3445799999999999999999998876432222222223
Q ss_pred hh-hcC-cccEEE-EeCCCHHHHHHHHHHHHHHHhhCCCEEEEEE
Q 016175 248 YK-RGD-YVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMD 289 (394)
Q Consensus 248 ~~-~g~-~~~~~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (394)
+. |+. .+.++| +|+ .+...|++.|+++ +++|++|.+.
T Consensus 480 a~LRaiPN~~V~RPaD~---~Et~~aw~~Al~~--~~gPt~Lilt 519 (663)
T COG0021 480 ASLRAIPNLSVIRPADA---NETAAAWKYALER--KDGPTALILT 519 (663)
T ss_pred HHhhccCCceeEecCCh---HHHHHHHHHHHhc--CCCCeEEEEe
Confidence 33 232 133343 455 4566777777764 4899999775
No 219
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=69.10 E-value=21 Score=38.35 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccc-cccc---c--ccccC-cchhhh
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAE---W--RAAKS-PSYYKR 250 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i-~~~~---~--~~~~~-~~~~~~ 250 (394)
.|-|.|.. .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-.... +... . ....+ .+....
T Consensus 65 ~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~ 138 (569)
T PRK08327 65 MAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGL 138 (569)
T ss_pred HHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHH
Confidence 44444443 33445667777888877 44567788889999999986533211 1000 0 00001 011111
Q ss_pred c-Cc-ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 251 G-DY-VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 251 g-~~-~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
. .. -...+|+ +++.+..++.+|+..++. .||++|++-
T Consensus 139 ~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 139 VREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 1 00 0113453 678888899999988875 689999987
No 220
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=68.93 E-value=35 Score=36.93 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHC--CCCeEEEEEcCCccccccccccccCcchhhhcC
Q 016175 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--DLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252 (394)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~--~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g~ 252 (394)
.+..++|+++| +.++++.+--..++ ...|.|..++.. .+|+|+++-|. -+-+.....+. +.++.+..
T Consensus 58 a~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~-~gp~~~~~~q~--d~~~~~~~ 126 (595)
T TIGR03336 58 AVEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADD-PSMHSSQNEQD--TRHYAKFA 126 (595)
T ss_pred HHHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccC-CCCccchhhHh--HHHHHHhc
Confidence 45577787776 33444444433343 356767666644 55666555543 33221111111 11333323
Q ss_pred cccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCC
Q 016175 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (394)
Q Consensus 253 ~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (394)
.++++ +-.|+.+++....+|.+.+++ +-|++|-..+ .-+|+..
T Consensus 127 ~~~vl--~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~~~ 170 (595)
T TIGR03336 127 KIPCL--EPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHMRG 170 (595)
T ss_pred CCeEE--CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eecccee
Confidence 35533 556799999999999999888 9999999986 4566654
No 221
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=68.70 E-value=31 Score=36.01 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=58.2
Q ss_pred HHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEE-cCCccccccccccccCcchhh--hcC-cc
Q 016175 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEWRAAKSPSYYK--RGD-YV 254 (394)
Q Consensus 179 A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~-NN~~~i~~~~~~~~~~~~~~~--~g~-~~ 254 (394)
|-|.|.+ .+..++|++..|-|++| +---|.=|-.-+.|+|++-- --.-+|++..- -+.+... |.. -|
T Consensus 145 AegYaR~---sgKPGvvlvTSGPGATN---vvtp~ADAlaDg~PlVvftGQVptsaIGtDAF---QEadiVgisRScTKw 215 (675)
T KOG4166|consen 145 AEGYARS---SGKPGVVLVTSGPGATN---VVTPLADALADGVPLVVFTGQVPTSAIGTDAF---QEADIVGISRSCTKW 215 (675)
T ss_pred hhhhhhh---cCCCcEEEEecCCCccc---ccchhhHHhhcCCcEEEEecccchhhcccchh---ccCCeeeeeecccee
Confidence 4455544 35678999999999988 33345566677889654421 11123443221 1111211 110 13
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
.+. | .|++++-+-+.+|.+.+-. .||+|+++-
T Consensus 216 Nvm-V--kdVedlPrrI~EAFeiATSGRPGPVLVDlP 249 (675)
T KOG4166|consen 216 NVM-V--KDVEDLPRRIEEAFEIATSGRPGPVLVDLP 249 (675)
T ss_pred hee-e--ecHHHhhHHHHHHhhhhccCCCCCeEeeCc
Confidence 222 2 4789999899999988865 689999763
No 222
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=68.42 E-value=27 Score=34.87 Aligned_cols=64 Identities=23% Similarity=0.214 Sum_probs=36.9
Q ss_pred CCCeEEEEEcCCccccccccccccCcchhhhcCcccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEEe
Q 016175 220 DLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (394)
Q Consensus 220 ~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (394)
++|+|+...+-.++...++..+. +.+.-..+|+++| -=.|..+++.+++.|+.. ++|++|-..-
T Consensus 110 ~v~vv~~~~~g~~~~~G~tH~~~----~ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~~---~~Pv~i~~~~ 174 (327)
T PRK09212 110 KCPIVFRGPNGAAARVAAQHSQC----YAAWYSHIPGLKVVAPYFAADCKGLLKTAIRD---PNPVIFLENE 174 (327)
T ss_pred CccEEEEeCCCCCCCCCcccccC----HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEEEch
Confidence 57777776654444322222111 2211122777765 446788888888887754 8899985443
No 223
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=68.11 E-value=42 Score=36.15 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=55.3
Q ss_pred CCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccccccCcchhhhc-Cc-ccEEEEeCCCHHH
Q 016175 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALA 266 (394)
Q Consensus 190 ~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~a 266 (394)
+.-.++++..|=|.+|- .-++.-|..-+.|+|+|+-.-. +.++... ..+.|..... .+ -...+|+ +++.
T Consensus 75 g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~---~q~~d~~~~~~~~tk~~~~v~--~~~~ 146 (585)
T CHL00099 75 GKVGVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTDA---FQEVDIFGITLPIVKHSYVVR--DARD 146 (585)
T ss_pred CCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCC---ccccchhhhhcCceeEEEEeC--CHHH
Confidence 44456777778888773 3456678889999998875321 1111100 0011111111 11 1134554 6888
Q ss_pred HHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 267 VKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 267 v~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
+.+.+++|+..+++ .||+.|++-.
T Consensus 147 i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 147 ISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred HHHHHHHHHHHHccCCCCeEEEecCh
Confidence 88889998888776 5899999863
No 224
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=67.97 E-value=37 Score=36.72 Aligned_cols=102 Identities=17% Similarity=0.113 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcchhhhc-Cc-cc
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG-DY-VP 255 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~~~~g-~~-~~ 255 (394)
.|-|.|.. .+.-.++++..|=|.+| ..-++.-|..-+.|+|+|.-.-...... ....-..+..... .. --
T Consensus 64 mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~ 135 (595)
T PRK09107 64 AAEGYARS---TGKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIG--SDAFQECDTVGITRPCTKH 135 (595)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcC--CCCCcccchhhhhhhheEE
Confidence 44555543 34446677777888887 3345677888999999887543221100 0001011111111 11 11
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 256 ~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
..+| ++++++.+.+.+|+..+++ .||+.|++-
T Consensus 136 ~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 169 (595)
T PRK09107 136 NWLV--KDVNDLARVIHEAFHVATSGRPGPVVVDIP 169 (595)
T ss_pred EEEe--CCHHHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 2455 4688899999999988877 589999886
No 225
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=67.70 E-value=41 Score=35.89 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccc--ccccc-Ccchhhhc-C
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRAAK-SPSYYKRG-D 252 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~--~~~~~-~~~~~~~g-~ 252 (394)
.|.|.|.+ .+.-.++++..|=|.+|- .-++.-|..-+.|+|+|.-+.... .+... +.+.. .++..... .
T Consensus 53 ~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARY---RGTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHh---hCCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 34555543 344567777779998873 345777888999999998543211 11100 00100 00111111 1
Q ss_pred c-ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEe
Q 016175 253 Y-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (394)
Q Consensus 253 ~-~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (394)
. --..+| .++..+.+++++|+..+.+ .||+.|++-.
T Consensus 127 vtk~~~~v--~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~ 164 (535)
T TIGR03394 127 VTCDQAVL--DDPATAPAEIARVLGSARELSRPVYLEIPR 164 (535)
T ss_pred heEEEEEe--CChHHhHHHHHHHHHHHHHCCCCEEEEech
Confidence 1 012334 2455666666666666656 7899999874
No 226
>PRK05858 hypothetical protein; Provisional
Probab=67.30 E-value=46 Score=35.46 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc---cccccccccccCcchhhh-cCc
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKR-GDY 253 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~---~i~~~~~~~~~~~~~~~~-g~~ 253 (394)
.|.|.|.+ .+.-.++++-.|=|.+| ..-++.-|..-+.|+|+|.-+-.. +.+..++ .+.... ..+
T Consensus 57 ~AdGyar~---tg~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-----~d~~~l~~~~ 125 (542)
T PRK05858 57 AAEAWAKL---TRVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQE-----IDHVPFVAPV 125 (542)
T ss_pred HHHHHHHh---cCCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcc-----cchhhhhhhh
Confidence 45555544 23445566666788776 345677788999999988753222 1111111 111111 111
Q ss_pred -ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 254 -VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 254 -~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
--..+|+ ++..+.+.+.+|+..+.+ .||+.|++-
T Consensus 126 tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 126 TKFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred hceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 1124553 577888888888877765 589999886
No 227
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=67.05 E-value=41 Score=35.98 Aligned_cols=93 Identities=18% Similarity=0.148 Sum_probs=55.6
Q ss_pred CCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-ccEEEEeCCCHHH
Q 016175 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-VPGLKVDGMDALA 266 (394)
Q Consensus 190 ~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~~~~~VDG~D~~a 266 (394)
+.-.++++..|=|.+| ..-++.-|..-+.|+|+|.-.-... .+. ...-+.|..... .+ -...+| +++++
T Consensus 65 g~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~~tk~s~~v--~~~~~ 136 (563)
T PRK08527 65 GKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLIGT---DAFQEIDAVGISRPCVKHNYLV--KSIEE 136 (563)
T ss_pred CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC---CCCcccchhhhhhcccceEEEc--CCHHH
Confidence 4455677777888877 3345677888999998887421110 000 000001111111 11 112345 57899
Q ss_pred HHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 267 VKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 267 v~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
+.+++++|+..+++ .||+.|++-.
T Consensus 137 i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 137 LPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 99999999988876 5899999863
No 228
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=67.03 E-value=52 Score=35.46 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|.+. +.-.++++..|=|.+| ..-++.-|..-+.|+|+|.-.-... .+.. .....|..... .. -
T Consensus 74 ~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~l~~~itk 144 (587)
T PRK06965 74 AADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIGQD---AFQECDTVGITRPIVK 144 (587)
T ss_pred HHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC---CcccccHHHHhcCCcc
Confidence 555655443 3345666667888877 3345666778899999887421111 1100 00011111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
-..+|. ++.++.+.+.+|+..+++ .||+.|++-.
T Consensus 145 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 145 HNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 124453 678888888888888876 4899999864
No 229
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=66.20 E-value=47 Score=35.56 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|-|.|.+ .+.-.++++..|=|.+| ..-++.-|..-+.|+|+|.-.-... .+.. ..+ ..+..... .. -
T Consensus 57 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~-~~q--~~d~~~l~~~vtk 127 (574)
T PRK06882 57 MADGYARS---TGKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIGTD-AFQ--ECDMLGISRPVVK 127 (574)
T ss_pred HHHHHHHh---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC-ccc--ccchhhhhhcccc
Confidence 44455543 23445666667888877 3345667888899999887532211 1100 000 01111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
...+| +++.++...+.+|+..+.. .||+.|++-.
T Consensus 128 ~s~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 128 HSFIV--KNAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 13455 3678888888888887765 5999999874
No 230
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=65.66 E-value=32 Score=37.20 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Ccc-
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DYV- 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~~- 254 (394)
.|-|.|.+. +.-.++++..|=|++| ..-++.-|-.-+.|+|+|+-.-... ++.. ...+.+..... ...
T Consensus 57 ~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~---~~q~~d~~~l~~~vt~ 127 (597)
T PRK08273 57 MAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAALGGH---YQQEVDLQSLFKDVAG 127 (597)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhcCCC---CCCccCHHHHHHHHHH
Confidence 455555443 3345666677888887 3345677888999999888431111 1100 00011111110 000
Q ss_pred -cEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEee
Q 016175 255 -PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (394)
Q Consensus 255 -~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (394)
-..+|+ +++.+.+.+++|+..+.+ .||+.|++-..
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 128 AFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 124453 577888888888888777 89999998643
No 231
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=65.43 E-value=45 Score=33.84 Aligned_cols=98 Identities=24% Similarity=0.247 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHhhhCCCCCeEEEE-EcccccccchHHH-HHHHHHH--------CCCCeEEEEEcCCccccccccccccC
Q 016175 175 QIPLGCGLAFAQKYSKDETVTFAL-YGDGAANQGQLFE-ALNIAAL--------WDLPAILVCENNHYGMGTAEWRAAKS 244 (394)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~l-~GDGa~~eG~~~E-aln~Aa~--------~~LpvI~vv~NN~~~i~~~~~~~~~~ 244 (394)
.+++|+|+|++- .++++++ +.|=. + ..+| -.|-++. +++|+|++.....++...++..+.
T Consensus 94 ~vg~AaGlA~~G-----~~Pvv~~~fa~Fl--~-ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~-- 163 (355)
T PTZ00182 94 FAGFAIGAAMNG-----LRPIAEFMFADFI--F-PAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS-- 163 (355)
T ss_pred HHHHHHHHHhCC-----CEEEEEechhhHH--H-HHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch--
Confidence 356777777641 2334333 45532 2 2233 2334444 356677665444454433322111
Q ss_pred cchhhhcCcccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEE
Q 016175 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (394)
Q Consensus 245 ~~~~~~g~~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (394)
+...-..+|++.| .=-|..+++.+++.|++. ++|++|-
T Consensus 164 --~ea~lr~iPn~~V~~Psd~~e~~~~l~~a~~~---~~P~~i~ 202 (355)
T PTZ00182 164 --FEAYFAHVPGLKVVAPSDPEDAKGLLKAAIRD---PNPVVFF 202 (355)
T ss_pred --HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 2211122666655 335777888888888764 8999773
No 232
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=64.73 E-value=54 Score=35.15 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=60.3
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccccccCcchhhhc-Cc-
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKRG-DY- 253 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~~~~~~~~~~~g-~~- 253 (394)
-.|.|.+.. .+.-.++++..|=|.+| ..-++.-|..-+.|+|+|.-... ..+.... .+ ..+..... ..
T Consensus 62 ~~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~-~q--~~d~~~~~~~it 132 (566)
T PRK07282 62 HEAEGYAKS---TGKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIGKDA-FQ--EADIVGITMPIT 132 (566)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCCCCC-cc--ccChhchhcCCC
Confidence 345555543 34456777777988887 33456677788999998885422 1121110 00 00111111 11
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
.-..+|+ ++.++.+++.+|+..+++ .||+.|++-.
T Consensus 133 k~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 133 KYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred ceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 1123453 677888888888888876 5899999864
No 233
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=64.14 E-value=14 Score=23.84 Aligned_cols=27 Identities=15% Similarity=0.398 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 016175 319 DPIERIRKLILAHDLATEKELKDIEKEV 346 (394)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~~l~~i~~e~ 346 (394)
+++..++. |.+.|++|++|..+.++++
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHH
Confidence 34555555 6688999999999888765
No 234
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=61.96 E-value=63 Score=34.79 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|-|.|.+. +.-.++++..|=|.+| ..-++--|..-+.|+|+|.-.-... ++.. ..+ +.+..... .. -
T Consensus 56 mAdgyar~t---gk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~Q--e~d~~~l~~~~tk 126 (578)
T PRK06546 56 AAAAEAQLT---GKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIGSG-FFQ--ETHPDRLFVECSG 126 (578)
T ss_pred HHHhHHHhh---CCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCC-Ccc--ccChhhhccccee
Confidence 444444432 3334555556778777 2234666788999999987532111 1000 000 00111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEe
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (394)
-..+|. +++.+.+.+.+|+..+.. .||+.|++-.
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 127 YCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred eEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 123453 577788888888887777 8999999863
No 235
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=61.82 E-value=72 Score=34.22 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~-~ 254 (394)
.|.|.|.+ .+.-.++++..|=|.+| ..-++.-|..-+.|+|+|.-+-... .+.. ..+ +.+..... .. .
T Consensus 56 ~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-~~Q--~~d~~~l~~~itk 126 (574)
T PRK09124 56 AAGAEAQL---TGELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGSG-YFQ--ETHPQELFRECSH 126 (574)
T ss_pred HHHHHHHh---hCCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCC-Ccc--ccChhhhccccee
Confidence 45555543 23233444445777776 2234566788899999988542211 1110 000 01111111 11 1
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEE
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (394)
-..+|+ ++..+.+.+++|+..+.. .||+.|++-
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 127 YCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 123443 566777777777777666 799999974
No 236
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=60.68 E-value=70 Score=34.34 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=59.5
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhhhc-Cc-
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY- 253 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~~g-~~- 253 (394)
-.|.|.|.+. +.-.++++..|=|.+|- .-++.-|..-+.|+|+|.-.-... .+. ....+.|..... ..
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~it 126 (572)
T PRK08979 56 HMADGYARAT---GKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLIGN---DAFQECDMIGISRPVV 126 (572)
T ss_pred HHHHHHHHHh---CCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCCcccchhHHhhhce
Confidence 3455555443 34456666678888773 345667778899999887432211 110 000011111111 11
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
-...+|+ +++++...+++|+..++. .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 127 KHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 1124554 688888889999988876 5899999763
No 237
>PLN02573 pyruvate decarboxylase
Probab=60.18 E-value=69 Score=34.51 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-cccc--ccccccCcchhh-hcCc
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTA--EWRAAKSPSYYK-RGDY 253 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~--~~~~~~~~~~~~-~g~~ 253 (394)
.|-|.|.+ .+ -.++++..|=|++| ..-++.-|..-+.|||+|+-.-... .+.. .+......++.. ...+
T Consensus 69 mAdgyaR~---tg-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (578)
T PLN02573 69 AADGYARA---RG-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 141 (578)
T ss_pred HHHHHHHH---hC-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHh
Confidence 44455543 34 56788888988877 2345667778899999998543321 1110 000000011111 1111
Q ss_pred ----ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEE
Q 016175 254 ----VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 254 ----~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (394)
--..+| .++..+.+.+++|+..++. .||+.|++-
T Consensus 142 ~~itk~s~~v--~~~~~~~~~l~~A~~~A~~~~gPV~l~iP 180 (578)
T PLN02573 142 QTVTCYQAVI--NNLEDAHELIDTAISTALKESKPVYISVS 180 (578)
T ss_pred hceEEEEEEe--CCHHHHHHHHHHHHHHHHhcCCCEEEEee
Confidence 112344 3577777778888877777 789999985
No 238
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=54.88 E-value=67 Score=32.15 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=22.8
Q ss_pred ccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEE
Q 016175 254 VPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (394)
Q Consensus 254 ~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (394)
+|+++| -=-|+.+.+..++.|++. ++|++|-
T Consensus 140 iPgl~V~~Psd~~d~~~~l~~a~~~---~~Pv~ir 171 (327)
T CHL00144 140 VPGLQIVACSTPYNAKGLLKSAIRS---NNPVIFF 171 (327)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 777765 335788888888887753 8998884
No 239
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=53.41 E-value=80 Score=34.35 Aligned_cols=106 Identities=17% Similarity=0.260 Sum_probs=60.6
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC-ccccccccccccCcchhhhcC
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKRGD 252 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~~~~~~~~~~~~g~ 252 (394)
+.+..|.|+|.+ .-+++++++-- +-|=.+-.-+-=.+..+|||+|+++-.+ .|...++... .++.+.
T Consensus 369 HAVT~AAGlA~~-----G~kPvvaIYST--FLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G-----~fDls~ 436 (627)
T COG1154 369 HAVTFAAGLAAE-----GMKPVVAIYST--FLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQG-----LFDLSF 436 (627)
T ss_pred HHHHHHHHHHhC-----CCCCEEEEecH--HHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCcccc-----HHHHHH
Confidence 344555555543 23567776631 2221122222235688999999999766 4443333221 223331
Q ss_pred --cccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecCC
Q 016175 253 --YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (394)
Q Consensus 253 --~~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (394)
.+|.+.| --.|..++.+.+..|..+ ..+|+.|-. .|+.|
T Consensus 437 l~~iPnmvi~aP~de~el~~ml~ta~~~--~~gP~AiRy--Prg~~ 478 (627)
T COG1154 437 LRCIPNMVIMAPRDEEELRQMLYTALAQ--DDGPVAIRY--PRGNG 478 (627)
T ss_pred HhcCCCcEEecCCCHHHHHHHHHHHHhc--CCCCeEEEe--cCCCC
Confidence 2777766 346888888888888876 258998844 35544
No 240
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=51.44 E-value=51 Score=34.05 Aligned_cols=104 Identities=20% Similarity=0.196 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-ccccccccccCcchhh-hcCc-c
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK-RGDY-V 254 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~~~~~~~~~~~-~g~~-~ 254 (394)
.|.|.|.+ .+.-.++++..|=|.+| ..-++.-|-.-+.|+|+|+-.-... .++.. .+. .+... +... -
T Consensus 53 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q~--~d~~~~~~~~tk 123 (432)
T TIGR00173 53 FALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGCGA-NQT--IDQPGLFGSYVR 123 (432)
T ss_pred HHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCCCC-Ccc--cchhhHHhhccc
Confidence 45555543 34456777777888877 3445667778899999887542211 11100 000 01111 1111 0
Q ss_pred cEEEEe-CCC---HHHHHHHHHHHHHHHhh--CCCEEEEEEe
Q 016175 255 PGLKVD-GMD---ALAVKQACKFAKEHALK--NGPMILEMDT 290 (394)
Q Consensus 255 ~~~~VD-G~D---~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (394)
-..+|. -.+ +..+.+.+++|+..+.. .||+.|++-.
T Consensus 124 ~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 124 WSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred eeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 113332 222 22355666666666654 5899999863
No 241
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=49.49 E-value=86 Score=33.34 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=30.5
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEE
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE 228 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~ 228 (394)
-.|-|.|.+. + ..++++..|=|++|- .-++..|..-+.|+|+|+-
T Consensus 53 ~mAdgyar~t---g-~gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G 97 (539)
T TIGR03393 53 YAADGYARCK---G-AAALLTTFGVGELSA---INGIAGSYAEHLPVIHIVG 97 (539)
T ss_pred HHhhhhhhhc---C-ceEEEEecCccHHHH---hhHHHHHhhccCCEEEEEC
Confidence 3455555543 3 356777779998773 2346668888999999885
No 242
>PRK11032 hypothetical protein; Provisional
Probab=49.24 E-value=49 Score=29.83 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 016175 321 IERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPM 362 (394)
Q Consensus 321 i~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~ 362 (394)
|...++++.+.|-+|++|++.+.+-++..+++..+...+...
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~ 71 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKE 71 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 788999999999999999999999999999998887655443
No 243
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=48.67 E-value=33 Score=28.32 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=31.5
Q ss_pred CCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC
Q 016175 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (394)
Q Consensus 191 ~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~ 231 (394)
++.++|++.-.|... +..|.+..|...+.|+|.|..|..
T Consensus 53 ~~d~vi~is~sg~~~--~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 53 PDDLVIIISYSGETR--ELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp TTEEEEEEESSSTTH--HHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ccceeEeeeccccch--hhhhhhHHHHhcCCeEEEEeCCCC
Confidence 466888888888776 488999999999999988886543
No 244
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=46.21 E-value=1.6e+02 Score=25.92 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCC-CCeEEEEEc-CCccccccccccccCcchhhhcCc
Q 016175 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-LPAILVCEN-NHYGMGTAEWRAAKSPSYYKRGDY 253 (394)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~-LpvI~vv~N-N~~~i~~~~~~~~~~~~~~~~g~~ 253 (394)
+++|.|+|+. +. .++++.+..-.. ..++.+.+...++ .|+|+.... ..++...++.. +..+..-+ ..
T Consensus 62 vg~a~GlA~~----G~-~pi~~~~~~f~~---~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~--~~~~~~~~-~~ 130 (168)
T smart00861 62 VGFAAGLALA----GL-RPVVAIFFTFFD---RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHH--SQEDEALL-RA 130 (168)
T ss_pred HHHHHHHHHc----CC-CcEEEeeHHHHH---HHHHHHHHhCcccCCCEEEEecCccccCCCCcccc--chhHHHHH-hc
Confidence 3456666654 22 555555544322 3677788888887 555555543 34443222111 11112111 12
Q ss_pred ccEEEE-eCCCHHHHHHHHHHHHHHHhhCCCEEEEE
Q 016175 254 VPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (394)
Q Consensus 254 ~~~~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (394)
+|++.| .=-|..++...++.++++ .++|++|-+
T Consensus 131 iP~~~v~~P~~~~e~~~~l~~a~~~--~~~p~~i~~ 164 (168)
T smart00861 131 IPGLKVVAPSDPAEAKGLLRAAIRR--DDGPPVIRL 164 (168)
T ss_pred CCCcEEEecCCHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 565543 556788888888888842 268977754
No 245
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=43.66 E-value=42 Score=27.70 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=29.1
Q ss_pred CeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc
Q 016175 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY 232 (394)
Q Consensus 193 ~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~ 232 (394)
.++|+.+.+-....|..+| +-+|..++.||+.++.+...
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 4666666655577899999 88999999999999887654
No 246
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=41.03 E-value=89 Score=38.29 Aligned_cols=103 Identities=16% Similarity=0.091 Sum_probs=58.3
Q ss_pred hHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-cc--ccccccccCcc-hhhhcC
Q 016175 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MG--TAEWRAAKSPS-YYKRGD 252 (394)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~--~~~~~~~~~~~-~~~~g~ 252 (394)
-.|.|.|.+. +.-.+++|..|=|.+| ..=++.-|..-+.|+|+|.-+-... .+ ..+.. .... +.....
T Consensus 353 fmAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~i--Dq~~lf~pvtK 424 (1655)
T PLN02980 353 FHALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQAI--NQVNHFGSFVR 424 (1655)
T ss_pred HHHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCccc--chhhHHHhhhh
Confidence 3566766553 4556777777888877 5667888889999999998653321 11 11110 0001 111111
Q ss_pred cccEEEE-eCCCH---HHHHHHHHHHHHHHhh--CCCEEEEEE
Q 016175 253 YVPGLKV-DGMDA---LAVKQACKFAKEHALK--NGPMILEMD 289 (394)
Q Consensus 253 ~~~~~~V-DG~D~---~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (394)
+ ...| +..+. ..+.+++++|+..++. .||+.|++-
T Consensus 425 ~--s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 425 F--FFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred e--eecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 1 1233 22231 1234667777766665 589999997
No 247
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.17 E-value=1e+02 Score=25.49 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=31.9
Q ss_pred CCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC
Q 016175 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (394)
Q Consensus 190 ~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~ 231 (394)
.++.+++++.--|... ++.+++..|...+.|+|.|..|..
T Consensus 46 ~~~d~vi~iS~sG~t~--~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETD--ELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4567888887777666 488999999999999998888654
No 248
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=39.41 E-value=3.7e+02 Score=26.18 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=48.9
Q ss_pred eEEEEEcccc--cccchHHHHHHHHHHCCCCeEEEEEcCC---ccccccccccc--cCc-chhhhc-Cc-ccEEEEeCCC
Q 016175 194 VTFALYGDGA--ANQGQLFEALNIAALWDLPAILVCENNH---YGMGTAEWRAA--KSP-SYYKRG-DY-VPGLKVDGMD 263 (394)
Q Consensus 194 ~vv~l~GDGa--~~eG~~~Ealn~Aa~~~LpvI~vv~NN~---~~i~~~~~~~~--~~~-~~~~~g-~~-~~~~~VDG~D 263 (394)
.+++++.||. .++|..-+.+.-|...++-++||+-+|. -+|--...... ... .+..+- .+ +|.+.|= +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 8888887778888888998877766543 22221100000 001 222221 23 5554432 47
Q ss_pred HHHHHHHHHHHHH
Q 016175 264 ALAVKQACKFAKE 276 (394)
Q Consensus 264 ~~av~~a~~~A~~ 276 (394)
+.++-+++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 8888777776663
No 249
>PRK13683 hypothetical protein; Provisional
Probab=36.99 E-value=49 Score=26.68 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=27.3
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhCCCEEEEEEeeecC
Q 016175 257 LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (394)
Q Consensus 257 ~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (394)
-+=+-.|+.++|+-+..|++. +.|.+||+.|-+-.
T Consensus 18 QRKe~edA~alYq~I~~am~s---g~P~llELtCek~~ 52 (87)
T PRK13683 18 QRKEAEDAEALYQQIRQAMRS---GNPRLLELTCEKVE 52 (87)
T ss_pred EeccHHHHHHHHHHHHHHHhc---CCCcEEEEEecCcC
Confidence 344566888999988888853 88999999997743
No 250
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=30.93 E-value=96 Score=31.53 Aligned_cols=61 Identities=36% Similarity=0.487 Sum_probs=36.4
Q ss_pred HHHHHHHC-----CCC----eEEEEEcCCccccccccccccCc-chhhhcCcccE--EEEeCCCHHHHHHHHH
Q 016175 212 ALNIAALW-----DLP----AILVCENNHYGMGTAEWRAAKSP-SYYKRGDYVPG--LKVDGMDALAVKQACK 272 (394)
Q Consensus 212 aln~Aa~~-----~Lp----vI~vv~NN~~~i~~~~~~~~~~~-~~~~~g~~~~~--~~VDG~D~~av~~a~~ 272 (394)
|+.+|..| ++| +|+.+.||-||-+...--.+..+ .|..+|.++|+ ..|.=+|++++..+++
T Consensus 132 a~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~ 204 (427)
T KOG1402|consen 132 ACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALK 204 (427)
T ss_pred HHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhc
Confidence 46667666 456 58888999988543322222222 45556666776 2455567877766664
No 251
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=30.41 E-value=80 Score=28.01 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 016175 319 DPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359 (394)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~ 359 (394)
+-|...++++.+.|-+|++|++.+.+-++..++++.+....
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999998877655
No 252
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=29.96 E-value=82 Score=25.10 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=31.9
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccc
Q 016175 327 LILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNV 372 (394)
Q Consensus 327 ~L~~~g~~t~~~l~~i~~e~~~~v~~a~~~A~~~~~p~~~~~~~~v 372 (394)
.|...|++|.+|+.+|.+.-... +.......+.+++.+.++
T Consensus 10 ~l~~~~lFt~~EI~~IvkkR~~f-----Ey~L~rr~~~~~Dfl~YI 50 (83)
T PF08640_consen 10 DLERKGLFTKEEIREIVKKRRDF-----EYKLQRRGKKKSDFLRYI 50 (83)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHH-----HHHHHcCCCCHHHHHHHH
Confidence 47778999999999998887765 666677777777776665
No 253
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.27 E-value=1.2e+02 Score=25.15 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=33.0
Q ss_pred CCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC
Q 016175 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (394)
Q Consensus 190 ~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~ 231 (394)
+++.+++++..-|... +..+++..|...+.|+|.|..|..
T Consensus 46 ~~~dl~I~iS~SG~t~--~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTK--ETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCCh--HHHHHHHHHHHcCCeEEEEECCCC
Confidence 3567889999888877 488999999999999998887543
No 254
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=27.76 E-value=4.5e+02 Score=31.17 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=59.8
Q ss_pred hhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccccCcch-hhhcCcc
Q 016175 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY-YKRGDYV 254 (394)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~~~~~~-~~~g~~~ 254 (394)
+..++|++.+ +.++.+++--.++. -.+|.|-.++-..+|+|+++.+-.+.-. +........|+ ..+...+
T Consensus 64 ~~av~GA~~a------Gara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~-~~~i~~dh~Dv~~~R~~G~ 134 (1165)
T TIGR02176 64 AGAVHGALQT------GALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAH-ALSIFGDHQDVMAARQTGF 134 (1165)
T ss_pred HHHHHhHhhc------CCCEEEecChhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCC-CCccCCCchHHHHhhcCCe
Confidence 4555565543 33444443222222 3578886666668998888876544321 10100001122 2233223
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCC
Q 016175 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (394)
Q Consensus 255 ~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs 297 (394)
+.+-..++.+++.-.-.|...+.+ ..|+++-.+.+|. +|.
T Consensus 135 --ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 135 --AMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred --EEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 233445787877777777776666 8899999988764 465
No 255
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=27.33 E-value=1.3e+02 Score=25.43 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=29.1
Q ss_pred CCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC
Q 016175 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (394)
Q Consensus 191 ~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN 230 (394)
++.++|.+.++|...+ ...+.+..+...+.|+|.|..++
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 4667888888886543 36678888888899988877654
No 256
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=26.86 E-value=1.6e+02 Score=27.03 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=24.4
Q ss_pred eEEEEEccc-ccccchHHHHHHHHHHCCCCeEEE
Q 016175 194 VTFALYGDG-AANQGQLFEALNIAALWDLPAILV 226 (394)
Q Consensus 194 ~vv~l~GDG-a~~eG~~~Ealn~Aa~~~LpvI~v 226 (394)
.+++++|++ ...+|.++++..-++..++.+-+|
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI 142 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDII 142 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEE
Confidence 556666666 788899999888887777776444
No 257
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.18 E-value=1.4e+02 Score=24.45 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC
Q 016175 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (394)
Q Consensus 190 ~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN 230 (394)
+++.++|++.-.|...+ .-|++..|...+.|+|.|..|.
T Consensus 45 ~~~d~~I~iS~sG~t~e--~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSGETAD--TLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCcCCHH--HHHHHHHHHHcCCeEEEEECCC
Confidence 45678888888888874 8899999999999999888763
No 258
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=26.18 E-value=1.3e+02 Score=24.92 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcC
Q 016175 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (394)
Q Consensus 190 ~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN 230 (394)
+++.++|++.-.|...+ ..|++..|...+.|+|.|..|+
T Consensus 42 ~~~dl~I~iS~SG~t~e--~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 42 DRKTLVIAVSYSGNTEE--TLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCCCEEEEEECCCCCHH--HHHHHHHHHHCCCEEEEEeCCc
Confidence 35678888988888774 8899999999999998887543
No 259
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=25.84 E-value=1.3e+02 Score=33.34 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=24.6
Q ss_pred CeEEEEEcccccccchHHHHHHHHHHCCCCeEEE
Q 016175 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226 (394)
Q Consensus 193 ~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~v 226 (394)
++.++=--||-.. ...||+.|+..+++|+||=
T Consensus 159 gVpvVPGTpgPit--t~~EA~eF~k~yG~PvI~K 190 (1176)
T KOG0369|consen 159 GVPVVPGTPGPIT--TVEEALEFVKEYGLPVIIK 190 (1176)
T ss_pred CCCccCCCCCCcc--cHHHHHHHHHhcCCcEEEe
Confidence 4555555566665 4899999999999999873
No 260
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=25.41 E-value=2e+02 Score=30.64 Aligned_cols=46 Identities=33% Similarity=0.417 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEc
Q 016175 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (394)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~N 229 (394)
.|.|.|.+. +.-.++++..|=|.+| ..-++.-|..-+.|+|+|.-.
T Consensus 62 aAdgyar~t---g~~~v~~vt~GpG~~N---~l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 62 LALGLAKAS---KRPVAVIVTSGTAVAN---LYPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHhh---CCCEEEEECCccHHHh---hhHHHHHHhhcCCcEEEEECC
Confidence 455655543 3445677777888887 345677788999999988743
No 261
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=25.26 E-value=3e+02 Score=28.17 Aligned_cols=113 Identities=13% Similarity=-0.013 Sum_probs=56.1
Q ss_pred CCcCCcc--chhhHHHHHHHHhhhCCCCCeEEEEEcccc-cccch---HHHHHHHHHHCCCCeEEEEEcCC-cccccccc
Q 016175 167 GGHGIVG--AQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQ---LFEALNIAALWDLPAILVCENNH-YGMGTAEW 239 (394)
Q Consensus 167 ~~~g~lG--~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa-~~eG~---~~Ealn~Aa~~~LpvI~vv~NN~-~~i~~~~~ 239 (394)
+++|.|. .+.+.|.|.-...+.++.. .-+++-+.. ..||. .|| ....++|+.+|++|-- |-|...
T Consensus 174 cnsg~Lat~~g~gtal~~i~~a~~~gk~--f~V~v~EsRP~~qG~rlta~e----L~~~GIpvtlI~Dsa~~~~m~~~-- 245 (363)
T PRK05772 174 CNAGGLATGTGLGTALAPVKLAKALGMS--VSVIAPETRPWLQGSRLTVYE----LMEEGIKVTLITDTAVGLVMYKD-- 245 (363)
T ss_pred cCCcchhhccccccHHHHHHHHHHCCCe--EEEEECCCCccchhHHHHHHH----HHHCCCCEEEEehhHHHHHHhhc--
Confidence 3455553 4556677766555444333 334455655 57774 344 3367999998887743 333210
Q ss_pred ccccCcchhhhcCcccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCC
Q 016175 240 RAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHG 295 (394)
Q Consensus 240 ~~~~~~~~~~~g~~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~G 295 (394)
. -+..-.| ...+.-||.=+..+- +..-|+. |+. +.|+++-+-+++..-
T Consensus 246 ~----Vd~VivG--AD~I~~NG~v~NKiG-Ty~lA~~-Ak~~~vPfyV~ap~~k~d~ 294 (363)
T PRK05772 246 M----VNNVMVG--ADRILRDGHVFNKIG-TFKEAVI-AHELGIPFYALAPTSTFDL 294 (363)
T ss_pred C----CCEEEEC--ccEEecCCCEeehhh-hHHHHHH-HHHhCCCEEEEccccccCc
Confidence 0 0111112 223444652111111 1111221 223 889999998876543
No 262
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=24.87 E-value=80 Score=23.12 Aligned_cols=20 Identities=35% Similarity=0.699 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCCHHHHHHH
Q 016175 323 RIRKLILAHDLATEKELKDI 342 (394)
Q Consensus 323 ~~~~~L~~~g~~t~~~l~~i 342 (394)
.+++.+++.|++|+++++++
T Consensus 27 svre~v~~~g~lt~ee~d~l 46 (55)
T PF10415_consen 27 SVREVVLEEGLLTEEELDEL 46 (55)
T ss_dssp -HHHHHHHTTSS-HHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHH
Confidence 36778889999999999876
No 263
>PRK13761 hypothetical protein; Provisional
Probab=24.82 E-value=1.2e+02 Score=29.01 Aligned_cols=43 Identities=30% Similarity=0.438 Sum_probs=25.1
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEEeeecCCCCCCCCCCCCCCchhhhhh
Q 016175 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGV 314 (394)
Q Consensus 254 ~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~ 314 (394)
-|++.||||-..-+- ++.++.+.. +.| ||++.| |||++.++.+
T Consensus 69 ~PVISVNGN~AAL~p---~eiveLa~~~~A~--iEVNLF-------------~RT~eR~~~I 112 (248)
T PRK13761 69 HPVISVNGNTAALVP---EEIVELAEALNAK--LEVNLF-------------YRTEERVEKI 112 (248)
T ss_pred CCeEEEcchHHhhCh---HHHHHHHHHhCCC--EEEEec-------------cCCHHHHHHH
Confidence 578899997433222 233333333 555 788875 8887765543
No 264
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=24.73 E-value=2.5e+02 Score=25.10 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=56.7
Q ss_pred chhhHHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCcc-cccccc--ccccCcchhhh
Q 016175 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEW--RAAKSPSYYKR 250 (394)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~-i~~~~~--~~~~~~~~~~~ 250 (394)
-++++++|+.+|-+ ...+.+---|==|.=...++ +=..+++|+..++...++- -..+.+ -....+++- .
T Consensus 53 eg~GIcAGa~lAGk-----k~ailmQnsGlGNsiNal~S--L~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiL-e 124 (172)
T COG4032 53 EGVGICAGAYLAGK-----KPAILMQNSGLGNSINALAS--LYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKIL-E 124 (172)
T ss_pred cceeeehhhhhcCC-----CcEEEEeccCcchHHHHHHH--HHHHhccchhhhhhccchhhcCCccccccchhhHHHH-h
Confidence 45678889988853 33444433332121112222 2357899988777766542 221111 111112111 1
Q ss_pred cCcccEEEEeCCCHHHHHHHHHHHHHHHhh-CCCEEEEEE
Q 016175 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (394)
Q Consensus 251 g~~~~~~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (394)
+..+|.+++-| +++-+..+..|...+-+ ..|+.+-+.
T Consensus 125 ~~~lpt~t~~~--p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 125 GLELPTYTIIG--PEEALPLIENAILDAFENSRPVAVLLS 162 (172)
T ss_pred hcCCcccccCC--HHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 22366677765 66767778888877766 889776543
No 265
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=24.38 E-value=1.3e+02 Score=26.28 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC
Q 016175 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (394)
Q Consensus 190 ~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~ 231 (394)
+++.+++++..-|... ...+++..|...+.|+|.+..|..
T Consensus 78 ~~~D~~i~iS~sG~t~--~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSK--NVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4677999999999876 588999999999999999887533
No 266
>PRK13936 phosphoheptose isomerase; Provisional
Probab=23.29 E-value=1.5e+02 Score=27.22 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=34.8
Q ss_pred CCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC
Q 016175 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (394)
Q Consensus 189 ~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~ 231 (394)
..++.+++++...|... .+.+++..|...+.|+|.|..+++
T Consensus 109 ~~~~Dv~i~iS~sG~t~--~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 109 GQPGDVLLAISTSGNSA--NVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCCCEEEEEeCCCCcH--HHHHHHHHHHHCCCeEEEEECCCC
Confidence 35778999999999876 489999999999999999887643
No 267
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.19 E-value=2.1e+02 Score=26.43 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=35.2
Q ss_pred hCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC
Q 016175 188 YSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (394)
Q Consensus 188 ~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~ 231 (394)
...++.+++++..-|...+ +-+++..|...+.|+|.+..|.+
T Consensus 110 ~~~~~DllI~iS~SG~t~~--vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 110 SARPGDTLFAISTSGNSMS--VLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred cCCCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 3456789999999998774 88999999999999999887644
No 268
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=22.43 E-value=2.1e+02 Score=21.32 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 016175 325 RKLILAHDLATEKELKDIEKEVRKEVDDA 353 (394)
Q Consensus 325 ~~~L~~~g~~t~~~l~~i~~e~~~~v~~a 353 (394)
-+..++.|.+|.++-+.|.+.+.+..+..
T Consensus 24 idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 24 IDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999988888776554
No 269
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=22.26 E-value=1.4e+02 Score=19.87 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 016175 319 DPIERIRKLILAHDLATEKELKDIEKEVRKEVDDA 353 (394)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~a 353 (394)
||+..|=+.+-...++|.+|-..+-.++++-.+.|
T Consensus 2 D~l~~Yl~ei~~~~LLt~eeE~~LA~~i~~g~~~a 36 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTAEEEIELARRIRKGDEAA 36 (37)
T ss_dssp HHHHHHHHHHHHS-EETTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHhc
Confidence 68888888888889999888888877777665443
No 270
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=21.91 E-value=3e+02 Score=21.67 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=28.4
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhCCC-EEEEEEeeec
Q 016175 257 LKVDGMDALAVKQACKFAKEHALKNGP-MILEMDTYRY 293 (394)
Q Consensus 257 ~~VDG~D~~av~~a~~~A~~~ar~~gP-~lIe~~t~R~ 293 (394)
-++.| |..+|.++++.+..++.+.++ +++++..-++
T Consensus 41 T~l~G-~~~~Vf~~l~~~~~~a~~~~~H~v~~~T~S~~ 77 (81)
T PF07615_consen 41 TQLRG-DEEDVFDALEAAFERAAEEGPHVVMVVTISNG 77 (81)
T ss_dssp EEEEC-BHHHHHHHHHHHHHHHHCCSSSEEEEEEEEES
T ss_pred EEEEC-CHHHHHHHHHHHHHHHhccCCeEEEEEEEECC
Confidence 46778 789999999999998877566 8888776554
No 271
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.73 E-value=1.7e+02 Score=26.70 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=34.2
Q ss_pred CCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC
Q 016175 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (394)
Q Consensus 190 ~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~ 231 (394)
.++.+++++...|... .+.+++..|...+.|+|.+..|+.
T Consensus 110 ~~~Dv~I~iS~SG~t~--~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 110 REGDVLLGISTSGNSG--NIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5678999999999876 588999999999999999887643
No 272
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=21.62 E-value=1.8e+02 Score=27.89 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.6
Q ss_pred CCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCC
Q 016175 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (394)
Q Consensus 190 ~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~ 231 (394)
+++.++|.+...|.+.. +.+++..|...+.|+|.|+.|..
T Consensus 117 ~~~DvvI~IS~SG~T~~--vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGRTPY--VLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 46779999999999884 99999999999999998887654
No 273
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=21.46 E-value=6.3e+02 Score=29.10 Aligned_cols=116 Identities=12% Similarity=0.015 Sum_probs=70.1
Q ss_pred CcCCccchhh---HHHHHHHHhhhCCCCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCc-ccccccccccc
Q 016175 168 GHGIVGAQIP---LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAK 243 (394)
Q Consensus 168 ~~g~lG~~lp---~A~G~A~A~k~~~~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~-~i~~~~~~~~~ 243 (394)
..|+-.+++- +|+|+|++.. +.+ .+..++.=..+...-.+|-+.+++..++++.+|...-+. ..+..-....
T Consensus 564 e~GIAEqnmv~~~iAAGlA~a~~--G~g-~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq- 639 (889)
T TIGR03186 564 EEGISEAGAISSWIAAATSYSVH--DLP-MLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQ- 639 (889)
T ss_pred EechhhHHHHHHHHHHHHhhhhc--CCC-ceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCccccc-
Confidence 5677777766 5888888752 122 133333344455457889999999999999888887665 3332111111
Q ss_pred Ccchhhhc--CcccEEEE-eCCCHHHHHHHHHHHHHHHhh---CCCEEEEEE
Q 016175 244 SPSYYKRG--DYVPGLKV-DGMDALAVKQACKFAKEHALK---NGPMILEMD 289 (394)
Q Consensus 244 ~~~~~~~g--~~~~~~~V-DG~D~~av~~a~~~A~~~ar~---~gP~lIe~~ 289 (394)
+..+.+ .-+|+..| +=-|..++..+++.++.++-. ++|+.|-+.
T Consensus 640 --~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~ 689 (889)
T TIGR03186 640 --DGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVT 689 (889)
T ss_pred --chHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 122222 12666554 666788888888888875433 467776543
No 274
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=21.00 E-value=2.6e+02 Score=19.79 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 016175 321 IERIRKLILAHDLATEKELKDIEKEVRKEVDD 352 (394)
Q Consensus 321 i~~~~~~L~~~g~~t~~~l~~i~~e~~~~v~~ 352 (394)
+.-|+..|.+.|+ +++++++--++.++.+.+
T Consensus 13 ~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 13 CLELRDELEEQGY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence 4568999999997 999988887777776654
No 275
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=20.61 E-value=1.1e+02 Score=24.57 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Q 016175 321 IERIRKLILAHDLATEKELKDIEKEV 346 (394)
Q Consensus 321 i~~~~~~L~~~g~~t~~~l~~i~~e~ 346 (394)
+..+-.+|+++|++|+++.+.|+.+-
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~ 41 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKA 41 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCC
Confidence 44578899999999999999997643
No 276
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=20.59 E-value=2.9e+02 Score=22.42 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=26.5
Q ss_pred CCCeEEEEEcccccccc--hHHHHHHHHHHCCCCeEEE
Q 016175 191 DETVTFALYGDGAANQG--QLFEALNIAALWDLPAILV 226 (394)
Q Consensus 191 ~~~~vv~l~GDGa~~eG--~~~Ealn~Aa~~~LpvI~v 226 (394)
.....+++++||....+ ...+.+..+...+..+.+|
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v 137 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTI 137 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEE
Confidence 45678999999997766 4777788887777765443
No 277
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=20.45 E-value=1.8e+02 Score=26.85 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 016175 321 IERIRKLILAHDLATEKELKDIEKEVRKE 349 (394)
Q Consensus 321 i~~~~~~L~~~g~~t~~~l~~i~~e~~~~ 349 (394)
...++..|++.|+++.++++.+.+.....
T Consensus 9 ~~al~~ll~ekg~~~~~~~~~~~~~~~~~ 37 (188)
T PF02979_consen 9 VRALESLLIEKGLITPAEVDRIIETYESR 37 (188)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 35688999999999999999887766654
No 278
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=20.17 E-value=1.2e+03 Score=25.70 Aligned_cols=105 Identities=16% Similarity=0.198 Sum_probs=62.9
Q ss_pred CCCeEEEEEcccccccchHHHHHHHHHHCCCCeEEEEEcCCccccccccccc-----cCcchhhhcCcccEEEE---eCC
Q 016175 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-----KSPSYYKRGDYVPGLKV---DGM 262 (394)
Q Consensus 191 ~~~~vv~l~GDGa~~eG~~~Ealn~Aa~~~LpvI~vv~NN~~~i~~~~~~~~-----~~~~~~~~g~~~~~~~V---DG~ 262 (394)
.+-+|+++.+|-+... |.-|++..|..-+.|+|+-++--. --+.+.++.. ..-...+.|.-++.+.+ -|.
T Consensus 225 tDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKiD-kp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKID-KPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred ccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEeccC-CCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 4668888888888654 689999999999999876554211 0111111110 01112334533444544 577
Q ss_pred CHHHHHHHHHHHHHH--Hh-h-CCC---EEEEEEeeecCCCC
Q 016175 263 DALAVKQACKFAKEH--AL-K-NGP---MILEMDTYRYHGHS 297 (394)
Q Consensus 263 D~~av~~a~~~A~~~--ar-~-~gP---~lIe~~t~R~~GHs 297 (394)
+++.+.+|+-.-.+. .+ . +|| .+||..+.++.|-.
T Consensus 303 nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~ 344 (683)
T KOG1145|consen 303 NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPV 344 (683)
T ss_pred ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccce
Confidence 888887776432211 12 2 666 79999988888743
Done!