Query 016177
Match_columns 394
No_of_seqs 338 out of 1019
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 100.0 3E-29 1E-33 207.2 6.8 89 249-337 4-92 (93)
2 1v31_A Hypothetical protein RA 100.0 3.8E-29 1.3E-33 206.6 6.2 87 106-192 5-91 (93)
3 1uhr_A SWI/SNF related, matrix 99.9 1.1E-28 3.8E-33 203.8 4.0 84 109-192 8-91 (93)
4 1uhr_A SWI/SNF related, matrix 99.9 1.8E-28 6.3E-33 202.6 4.5 86 252-337 7-92 (93)
5 1v32_A AT5G08430, hypothetical 99.9 8.8E-26 3E-30 189.1 7.2 74 114-187 15-94 (101)
6 1v32_A AT5G08430, hypothetical 99.9 1.1E-25 3.9E-30 188.5 7.4 79 257-335 14-98 (101)
7 1q1v_A DEK protein; winged-hel 99.6 2.4E-16 8.2E-21 123.8 7.1 56 1-56 11-67 (70)
8 3dac_M MDM4 protein; MDMX, MDM 97.2 0.00028 9.7E-09 60.7 4.6 81 256-336 24-113 (130)
9 2z5s_M MDM4 protein, zebrafish 97.0 0.00072 2.5E-08 58.6 5.5 77 255-331 22-107 (140)
10 3fea_A MDM4 protein; HDMX, HDM 96.8 0.00065 2.2E-08 56.3 3.5 74 257-330 16-98 (100)
11 1ycq_A MDM2, MDM2; anti-oncoge 96.8 0.0015 5.2E-08 54.6 5.6 76 256-331 11-95 (107)
12 1z1m_A Ubiquitin-protein ligas 96.6 0.0031 1.1E-07 53.6 6.0 77 255-331 26-111 (119)
13 3dac_M MDM4 protein; MDMX, MDM 96.2 0.0042 1.4E-07 53.5 4.3 74 115-188 27-109 (130)
14 2axi_A Ubiquitin-protein ligas 96.0 0.0036 1.2E-07 52.9 3.3 76 256-331 11-95 (115)
15 1z1m_A Ubiquitin-protein ligas 95.7 0.016 5.5E-07 49.3 5.9 76 113-188 28-109 (119)
16 3fea_A MDM4 protein; HDMX, HDM 95.5 0.0088 3E-07 49.5 3.6 72 115-186 18-98 (100)
17 1ycq_A MDM2, MDM2; anti-oncoge 95.3 0.019 6.6E-07 48.0 4.9 72 114-185 13-90 (107)
18 2z5s_M MDM4 protein, zebrafish 95.3 0.02 6.8E-07 49.7 5.0 76 112-187 23-107 (140)
19 2axi_A Ubiquitin-protein ligas 94.5 0.017 5.8E-07 48.8 2.5 73 114-186 13-91 (115)
20 2kwl_A ACP, acyl carrier prote 66.8 4.3 0.00015 30.6 3.3 58 268-328 1-58 (84)
21 2kwl_A ACP, acyl carrier prote 65.6 3.9 0.00013 30.9 2.8 58 124-184 1-58 (84)
22 1f80_D Acyl carrier protein; t 47.5 12 0.00041 27.8 2.8 55 271-328 2-56 (81)
23 2dnw_A Acyl carrier protein; A 41.8 23 0.00078 27.7 3.7 58 268-328 7-64 (99)
24 1f80_D Acyl carrier protein; t 41.6 15 0.00053 27.1 2.6 55 127-184 2-56 (81)
25 2keb_A DNA polymerase subunit 41.5 31 0.0011 28.4 4.5 42 12-56 15-56 (101)
26 2cnr_A FAS, ACP, acyl carrier 40.3 32 0.0011 25.2 4.2 54 272-328 3-56 (82)
27 2lol_A ACP, acyl carrier prote 38.7 27 0.00093 25.7 3.5 54 272-328 2-55 (81)
28 2dnw_A Acyl carrier protein; A 38.7 20 0.00067 28.1 2.9 60 122-184 5-64 (99)
29 2cg5_B Fatty acid synthase; tr 33.6 27 0.00092 27.8 2.9 40 5-44 9-62 (91)
30 2cnr_A FAS, ACP, acyl carrier 33.4 42 0.0014 24.5 3.9 54 128-184 3-56 (82)
31 1dv5_A APO-DCP, APO-D-alanyl c 32.6 30 0.001 25.9 3.0 53 273-328 1-53 (80)
32 1x3o_A Acyl carrier protein; s 31.8 22 0.00075 26.0 2.0 54 272-328 1-54 (80)
33 2lol_A ACP, acyl carrier prote 31.6 40 0.0014 24.8 3.4 54 128-184 2-55 (81)
34 3ce7_A Specific mitochodrial a 29.5 50 0.0017 26.6 3.9 42 1-42 12-77 (107)
35 1dd4_C 50S ribosomal protein L 27.1 40 0.0014 23.2 2.4 22 19-40 12-33 (40)
36 1klp_A ACP, ACPM, meromycolate 25.6 57 0.0019 26.2 3.6 56 271-329 2-57 (115)
37 2l4b_A Acyl carrier protein; i 25.5 12 0.00041 28.5 -0.5 58 271-329 3-61 (88)
38 2do1_A Nuclear protein HCC-1; 24.6 1.4E+02 0.0048 21.7 5.2 40 17-57 7-46 (55)
39 2ava_A ACP I, acyl carrier pro 24.6 68 0.0023 23.5 3.7 53 273-328 1-53 (82)
40 2ahq_A Sigma-54, RNA polymeras 24.4 81 0.0028 24.5 4.1 41 2-43 16-57 (76)
41 1x3o_A Acyl carrier protein; s 23.1 32 0.0011 25.0 1.5 54 128-184 1-54 (80)
42 2cgq_A Acyl carrier protein AC 22.5 36 0.0012 28.0 1.8 53 268-329 23-75 (113)
43 1nq4_A Oxytetracycline polyket 21.7 1.1E+02 0.0037 23.7 4.5 42 3-44 5-63 (95)
44 1af8_A Actinorhodin polyketide 21.4 65 0.0022 24.0 3.0 52 277-329 6-58 (86)
45 1v54_E Cytochrome C oxidase po 21.3 1.3E+02 0.0043 25.1 4.9 48 3-53 7-54 (109)
46 1klp_A ACP, ACPM, meromycolate 21.0 72 0.0025 25.6 3.4 55 127-184 2-56 (115)
47 1vku_A Acyl carrier protein; T 20.9 69 0.0024 25.4 3.2 56 270-329 11-66 (100)
48 1jjr_A KU70, thyroid autoantig 20.4 1.1E+02 0.0038 26.7 4.6 46 10-56 51-96 (151)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.95 E-value=3e-29 Score=207.19 Aligned_cols=89 Identities=22% Similarity=0.499 Sum_probs=85.0
Q ss_pred CCCCCCccccCCHHHHhhhCCCcccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCC
Q 016177 249 RRGGFTKLCSLSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (394)
Q Consensus 249 ~~~gf~~~~~LS~~La~flG~~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~ 328 (394)
+..+++.+|.||++||+|||..++||++|+++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||.
T Consensus 4 ~~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1v31_A 4 GSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLS 83 (93)
T ss_dssp SCCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCB
T ss_pred CCCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccc
Q 016177 329 PLDEADAKS 337 (394)
Q Consensus 329 p~dp~~~~~ 337 (394)
|++|+.+++
T Consensus 84 p~~Pi~~~~ 92 (93)
T 1v31_A 84 PPPPSGPSS 92 (93)
T ss_dssp CCCCSSCCC
T ss_pred CCCCeeCCC
Confidence 999998753
No 2
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.95 E-value=3.8e-29 Score=206.59 Aligned_cols=87 Identities=29% Similarity=0.544 Sum_probs=83.2
Q ss_pred CCCCCccccCCHHHHhhhCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCccccChhHHhhhccCccChhhHHHHHhccCCC
Q 016177 106 GGGFNKLCSLSTQLQKVVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIWP 185 (394)
Q Consensus 106 ~~g~~k~~~LSp~La~~lG~~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cDe~Lk~lFg~d~i~~f~m~k~L~~Hl~p 185 (394)
..+++.+|.|||+||+|||..++||++||++||+|||.||||||+|||.|+||++|+.|||+++|.||+|+++|++||.|
T Consensus 5 ~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p 84 (93)
T 1v31_A 5 SSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 84 (93)
T ss_dssp CCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBC
T ss_pred CCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcc
Q 016177 186 LGAEDEN 192 (394)
Q Consensus 186 ~~p~~~~ 192 (394)
++|+.+.
T Consensus 85 ~~Pi~~~ 91 (93)
T 1v31_A 85 PPPSGPS 91 (93)
T ss_dssp CCCSSCC
T ss_pred CCCeeCC
Confidence 9999774
No 3
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.94 E-value=1.1e-28 Score=203.84 Aligned_cols=84 Identities=26% Similarity=0.526 Sum_probs=80.7
Q ss_pred CCccccCCHHHHhhhCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCccccChhHHhhhccCccChhhHHHHHhccCCCCCC
Q 016177 109 FNKLCSLSTQLQKVVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIWPLGA 188 (394)
Q Consensus 109 ~~k~~~LSp~La~~lG~~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cDe~Lk~lFg~d~i~~f~m~k~L~~Hl~p~~p 188 (394)
.+.+|.|||+||+|||..++||++||++||+|||.||||||.|||.|+||++|+.|||+++|.||+|+++|++||.|++|
T Consensus 8 ~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~P 87 (93)
T 1uhr_A 8 QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 87 (93)
T ss_dssp SCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSSC
T ss_pred CCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 016177 189 EDEN 192 (394)
Q Consensus 189 ~~~~ 192 (394)
+.+.
T Consensus 88 I~i~ 91 (93)
T 1uhr_A 88 SGPS 91 (93)
T ss_dssp CCSS
T ss_pred eeCC
Confidence 9874
No 4
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.94 E-value=1.8e-28 Score=202.56 Aligned_cols=86 Identities=27% Similarity=0.589 Sum_probs=82.4
Q ss_pred CCCccccCCHHHHhhhCCCcccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCCCCC
Q 016177 252 GFTKLCSLSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWPLD 331 (394)
Q Consensus 252 gf~~~~~LS~~La~flG~~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~p~d 331 (394)
..+.+|+||++||+|+|..++||++|+++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||.|++
T Consensus 7 ~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1uhr_A 7 GQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPE 86 (93)
T ss_dssp SSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSS
T ss_pred cCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 016177 332 EADAKS 337 (394)
Q Consensus 332 p~~~~~ 337 (394)
|+.+.+
T Consensus 87 PI~i~~ 92 (93)
T 1uhr_A 87 PSGPSS 92 (93)
T ss_dssp CCCSSC
T ss_pred CeeCCC
Confidence 998754
No 5
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.92 E-value=8.8e-26 Score=189.12 Aligned_cols=74 Identities=34% Similarity=0.478 Sum_probs=70.9
Q ss_pred cCCHHHHhhh---CC---CCCcHHHHHHHHHHHHHhcCCCCCCCCCccccChhHHhhhccCccChhhHHHHHhccCCCCC
Q 016177 114 SLSTQLQKVV---GA---PELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIWPLG 187 (394)
Q Consensus 114 ~LSp~La~~l---G~---~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cDe~Lk~lFg~d~i~~f~m~k~L~~Hl~p~~ 187 (394)
.+||+|++|| |. .++||++||++||+|||+||||||.|||.|+||++|+.|||+++|+||+|+++|++||.+..
T Consensus 15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~~ 94 (101)
T 1v32_A 15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQ 94 (101)
T ss_dssp SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSCC
T ss_pred cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCccc
Confidence 6899999999 98 57999999999999999999999999999999999999999999999999999999998854
No 6
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.92 E-value=1.1e-25 Score=188.45 Aligned_cols=79 Identities=25% Similarity=0.455 Sum_probs=74.1
Q ss_pred ccCCHHHHhhh---CC---CcccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCCCC
Q 016177 257 CSLSPDLQTFV---GV---SELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWPL 330 (394)
Q Consensus 257 ~~LS~~La~fl---G~---~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~p~ 330 (394)
-++|++|++|| |. .++||++|+++||+|||+||||||.|||.|+||++|+.|||+++|.||+|+++|++||.+.
T Consensus 14 ~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 14 GWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp SSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred ccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 36999999999 88 5799999999999999999999999999999999999999999999999999999999987
Q ss_pred Ccccc
Q 016177 331 DEADA 335 (394)
Q Consensus 331 dp~~~ 335 (394)
+....
T Consensus 94 ~e~~~ 98 (101)
T 1v32_A 94 QDSGP 98 (101)
T ss_dssp CCCCS
T ss_pred cccCC
Confidence 66553
No 7
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=99.64 E-value=2.4e-16 Score=123.80 Aligned_cols=56 Identities=20% Similarity=0.464 Sum_probs=55.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh-CCCChhhHHHHHHHHHHHHh
Q 016177 1 MVSDSDLVTRLRDILRNSDLDTATAGSVRRLLEEDF-KVDLSDRKAFVSEQIDLFLQ 56 (394)
Q Consensus 1 mvSd~ei~~~I~~IL~~sDL~tvT~k~IR~~LE~~f-GvDLs~kK~~I~~~I~~~l~ 56 (394)
||||++|...|++||++|||++||.|+||++|++.| |+||+++|+||+.+|+.||+
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~ 67 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKELIS 67 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999 99999999999999999996
No 8
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=97.20 E-value=0.00028 Score=60.71 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=66.4
Q ss_pred cccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHHcCCCCCCCCCccccc-hhhhhhhccCccChhh---HHHHHhcc
Q 016177 256 LCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQ---MNKALTRH 326 (394)
Q Consensus 256 ~~~LS~~La~fl---G~--~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD-~kLk~LFg~d~i~~~~---m~klL~~H 326 (394)
.++--+.|-.+| |. ...|..+|+..+=+||-.+.|.||.+..+|.|- +.|..+||+++|++.+ +..+|.++
T Consensus 24 ~Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~N 103 (130)
T 3dac_M 24 QVHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRN 103 (130)
T ss_dssp EEEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHH
T ss_pred ecCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhh
Confidence 344456777776 54 489999999999999999999999999999996 8899999999999999 99999999
Q ss_pred CCCCCccccc
Q 016177 327 IWPLDEADAK 336 (394)
Q Consensus 327 l~p~dp~~~~ 336 (394)
|.++...+.+
T Consensus 104 Lv~~~~~~a~ 113 (130)
T 3dac_M 104 LVILNNSDAA 113 (130)
T ss_dssp EEEC------
T ss_pred eecccCcchH
Confidence 9998755533
No 9
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=97.04 E-value=0.00072 Score=58.59 Aligned_cols=77 Identities=23% Similarity=0.328 Sum_probs=66.0
Q ss_pred ccccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHHcCCCCCCCCCccccc-hhhhhhhccCccChhhHH---HHHhc
Q 016177 255 KLCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMN---KALTR 325 (394)
Q Consensus 255 ~~~~LS~~La~fl---G~--~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD-~kLk~LFg~d~i~~~~m~---klL~~ 325 (394)
..++--+.|-.|| |. ...|+-+|+-.|=+||-.+.|.|+.+..+|.|. +.|..||||.+|++.+.. ++|.+
T Consensus 22 ~~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~ 101 (140)
T 2z5s_M 22 TQVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKR 101 (140)
T ss_dssp CCBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHH
T ss_pred ceecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHH
Confidence 3667778888887 54 489999999999999999999999999999997 778999999999998665 77777
Q ss_pred cCCCCC
Q 016177 326 HIWPLD 331 (394)
Q Consensus 326 Hl~p~d 331 (394)
-+.+..
T Consensus 102 NLv~~~ 107 (140)
T 2z5s_M 102 NLVILN 107 (140)
T ss_dssp HEECC-
T ss_pred hccccc
Confidence 777766
No 10
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=96.85 E-value=0.00065 Score=56.26 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=63.4
Q ss_pred ccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHHcCCCCCCCCCccccc-hhhhhhhccCccChh---hHHHHHhccC
Q 016177 257 CSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMF---QMNKALTRHI 327 (394)
Q Consensus 257 ~~LS~~La~fl---G~--~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD-~kLk~LFg~d~i~~~---~m~klL~~Hl 327 (394)
++--+.|-.+| |. +..|..+|+..+=+||-.+.|.||.+..+|.|. +.|-.+||+++|++. .+..+|.+||
T Consensus 16 Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nL 95 (100)
T 3fea_A 16 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNL 95 (100)
T ss_dssp BEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhc
Confidence 44446677776 54 489999999999999999999999999999996 789999999999998 7888999988
Q ss_pred CCC
Q 016177 328 WPL 330 (394)
Q Consensus 328 ~p~ 330 (394)
..+
T Consensus 96 v~~ 98 (100)
T 3fea_A 96 VTL 98 (100)
T ss_dssp EC-
T ss_pred eec
Confidence 764
No 11
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.83 E-value=0.0015 Score=54.64 Aligned_cols=76 Identities=25% Similarity=0.424 Sum_probs=62.1
Q ss_pred cccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHHcCCCCCCCCCccccc-hhhhhhhccCccChhhHH---HHHhcc
Q 016177 256 LCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMN---KALTRH 326 (394)
Q Consensus 256 ~~~LS~~La~fl---G~--~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD-~kLk~LFg~d~i~~~~m~---klL~~H 326 (394)
.++-.+.|-.+| |. ...|+.+|+-.|=+||-.+.|.|+.+..+|.|. +.|..+|||.+|++.+.. ++|.+.
T Consensus 11 ~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (107)
T 1ycq_A 11 LVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRN 90 (107)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 344456666666 54 478999999999999999999999999999997 778999999999998777 566666
Q ss_pred CCCCC
Q 016177 327 IWPLD 331 (394)
Q Consensus 327 l~p~d 331 (394)
+.+..
T Consensus 91 Lv~~~ 95 (107)
T 1ycq_A 91 LVSAN 95 (107)
T ss_dssp EEESC
T ss_pred ccccc
Confidence 65544
No 12
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.62 E-value=0.0031 Score=53.64 Aligned_cols=77 Identities=29% Similarity=0.386 Sum_probs=61.4
Q ss_pred ccccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHHcCCCCCCCCCccccc-hhhhhhhccCccChhhHHHHHh---c
Q 016177 255 KLCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMNKALT---R 325 (394)
Q Consensus 255 ~~~~LS~~La~fl---G~--~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD-~kLk~LFg~d~i~~~~m~klL~---~ 325 (394)
..++-.+.|-.|| |. ...|.-+|+..+=+||-.+.|.|+.+..+|.|. +.|..|||+.+|++-+-..+.. +
T Consensus 26 ~~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~ 105 (119)
T 1z1m_A 26 TLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYR 105 (119)
T ss_dssp CCCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSC
T ss_pred ccccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHH
Confidence 3455556666666 54 478999999999999999999999999999997 7789999999999987655554 4
Q ss_pred cCCCCC
Q 016177 326 HIWPLD 331 (394)
Q Consensus 326 Hl~p~d 331 (394)
.|....
T Consensus 106 nLv~~~ 111 (119)
T 1z1m_A 106 NLVVVN 111 (119)
T ss_dssp SCCCCC
T ss_pred hccccc
Confidence 444443
No 13
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.16 E-value=0.0042 Score=53.47 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=63.7
Q ss_pred CCHHHHhhh---CC--CCCcHHHHHHHHHHHHHhcCCCCCCCCCccccC-hhHHhhhccCccChhh---HHHHHhccCCC
Q 016177 115 LSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFK---MNRALSKHIWP 185 (394)
Q Consensus 115 LSp~La~~l---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-e~Lk~lFg~d~i~~f~---m~k~L~~Hl~p 185 (394)
--+.|-.+| |. +..|..+|+-.|=+||-.+.|.||.+..+|.|- +.|..+||++++++.+ +...|.++|.+
T Consensus 27 pk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NLv~ 106 (130)
T 3dac_M 27 PRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNLVI 106 (130)
T ss_dssp ECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHEEE
T ss_pred CcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhheec
Confidence 345666665 54 578999999999999999999999999999996 7899999999999998 99999999988
Q ss_pred CCC
Q 016177 186 LGA 188 (394)
Q Consensus 186 ~~p 188 (394)
+..
T Consensus 107 ~~~ 109 (130)
T 3dac_M 107 LNN 109 (130)
T ss_dssp C--
T ss_pred ccC
Confidence 763
No 14
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=96.04 E-value=0.0036 Score=52.86 Aligned_cols=76 Identities=28% Similarity=0.384 Sum_probs=60.4
Q ss_pred cccCCHHHHhhh---CC--CcccHHHHHHHHHHHHHHcCCCCCCCCCccccc-hhhhhhhccCccChhhHHHH---Hhcc
Q 016177 256 LCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMNKA---LTRH 326 (394)
Q Consensus 256 ~~~LS~~La~fl---G~--~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD-~kLk~LFg~d~i~~~~m~kl---L~~H 326 (394)
.++-.+.|-.+| |. ...|..+|+-.+=+||-.+.|.|+.+..+|.|. +.|..||||.+|++.+-..+ |.+-
T Consensus 11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (115)
T 2axi_A 11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRN 90 (115)
T ss_dssp EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 344556666766 54 478999999999999999999999999999997 77899999999998875554 4454
Q ss_pred CCCCC
Q 016177 327 IWPLD 331 (394)
Q Consensus 327 l~p~d 331 (394)
|....
T Consensus 91 Lv~~~ 95 (115)
T 2axi_A 91 LVVVN 95 (115)
T ss_dssp EEECS
T ss_pred ccccc
Confidence 44443
No 15
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=95.73 E-value=0.016 Score=49.27 Aligned_cols=76 Identities=25% Similarity=0.327 Sum_probs=61.2
Q ss_pred ccCCHHHHhhh---CC--CCCcHHHHHHHHHHHHHhcCCCCCCCCCccccC-hhHHhhhccCccChhhHHHHHhccCCCC
Q 016177 113 CSLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMNRALSKHIWPL 186 (394)
Q Consensus 113 ~~LSp~La~~l---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-e~Lk~lFg~d~i~~f~m~k~L~~Hl~p~ 186 (394)
.+-.+.|-.|| |. ...++.+|+..|=+||-.+.|.|+.+..+|.|. |.|-.+||+..|++-+-..+...|...+
T Consensus 28 VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 107 (119)
T 1z1m_A 28 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNL 107 (119)
T ss_dssp CCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCSC
T ss_pred ccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 34444555555 54 568899999999999999999999999999996 7789999999999988777777666555
Q ss_pred CC
Q 016177 187 GA 188 (394)
Q Consensus 187 ~p 188 (394)
-.
T Consensus 108 v~ 109 (119)
T 1z1m_A 108 VV 109 (119)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 16
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=95.53 E-value=0.0088 Score=49.51 Aligned_cols=72 Identities=26% Similarity=0.387 Sum_probs=61.0
Q ss_pred CCHHHHhhh---CC--CCCcHHHHHHHHHHHHHhcCCCCCCCCCccccC-hhHHhhhccCccChh---hHHHHHhccCCC
Q 016177 115 LSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMF---KMNRALSKHIWP 185 (394)
Q Consensus 115 LSp~La~~l---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-e~Lk~lFg~d~i~~f---~m~k~L~~Hl~p 185 (394)
--+.|-.+| |. +..|..+|+..+=+||-.+.|.||.+...|.|- +.|-.+||++++++. .+...|.+||..
T Consensus 18 pk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nLv~ 97 (100)
T 3fea_A 18 PKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVT 97 (100)
T ss_dssp ECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHEEC
T ss_pred CcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhcee
Confidence 345666665 54 578999999999999999999999999999996 788999999999888 788889888865
Q ss_pred C
Q 016177 186 L 186 (394)
Q Consensus 186 ~ 186 (394)
+
T Consensus 98 ~ 98 (100)
T 3fea_A 98 L 98 (100)
T ss_dssp -
T ss_pred c
Confidence 4
No 17
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=95.31 E-value=0.019 Score=48.00 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=57.8
Q ss_pred cCCHHHHhhh---CC--CCCcHHHHHHHHHHHHHhcCCCCCCCCCccccC-hhHHhhhccCccChhhHHHHHhccCCC
Q 016177 114 SLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMNRALSKHIWP 185 (394)
Q Consensus 114 ~LSp~La~~l---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-e~Lk~lFg~d~i~~f~m~k~L~~Hl~p 185 (394)
+-.+.|-.+| |. ...|+.+|+-.|=+||-...|.|+.+..+|.|. |.|-.+||+..+++-+-..+...|...
T Consensus 13 rPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (107)
T 1ycq_A 13 QPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRN 90 (107)
T ss_dssp EECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTT
T ss_pred CccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 3345566665 44 568999999999999999999999999999997 778999999999998877554444433
No 18
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=95.27 E-value=0.02 Score=49.66 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=62.2
Q ss_pred cccCCHHHHhhh---CC--CCCcHHHHHHHHHHHHHhcCCCCCCCCCccccC-hhHHhhhccCccChhhHH---HHHhcc
Q 016177 112 LCSLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMN---RALSKH 182 (394)
Q Consensus 112 ~~~LSp~La~~l---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-e~Lk~lFg~d~i~~f~m~---k~L~~H 182 (394)
.++--|.|-.|| |. ...|+.+|+..|=+||-...|.|+.+..+|.|. +.|-.|||+..|++-+.. +.|.+.
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 455567788877 54 578999999999999999999999999999996 778999999999888655 666666
Q ss_pred CCCCC
Q 016177 183 IWPLG 187 (394)
Q Consensus 183 l~p~~ 187 (394)
|.+..
T Consensus 103 Lv~~~ 107 (140)
T 2z5s_M 103 LVILN 107 (140)
T ss_dssp EECC-
T ss_pred ccccc
Confidence 65544
No 19
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=94.50 E-value=0.017 Score=48.83 Aligned_cols=73 Identities=26% Similarity=0.355 Sum_probs=58.6
Q ss_pred cCCHHHHhhh---CC--CCCcHHHHHHHHHHHHHhcCCCCCCCCCccccC-hhHHhhhccCccChhhHHHHHhccCCCC
Q 016177 114 SLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMNRALSKHIWPL 186 (394)
Q Consensus 114 ~LSp~La~~l---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-e~Lk~lFg~d~i~~f~m~k~L~~Hl~p~ 186 (394)
+-.+.|-.+| |. ...|+.+|+-.+=+||-...|.||.+..+|.|. |.|-.+||+..|++-+-..+...+...+
T Consensus 13 rPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 91 (115)
T 2axi_A 13 RPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNL 91 (115)
T ss_dssp EECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHTTE
T ss_pred CccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 3445566665 44 567999999999999999999999999999996 7789999999999887666655554443
No 20
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=66.83 E-value=4.3 Score=30.64 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=47.5
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCC
Q 016177 268 GVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (394)
Q Consensus 268 G~~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~ 328 (394)
|...|+|.++...|.++|...-=.++ ..|..|..|..-+|-||+.+.++.-.|..+|-
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 55679999999999999887532233 46889999977899999999999999988764
No 21
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=65.58 E-value=3.9 Score=30.91 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=47.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCCCCCCccccChhHHhhhccCccChhhHHHHHhccCC
Q 016177 124 GAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (394)
Q Consensus 124 G~~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cDe~Lk~lFg~d~i~~f~m~k~L~~Hl~ 184 (394)
|...|+|.++...|.++|.+.-=.++ ..|..|..|..-+|-|++.+.+|...|..+|.
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 56789999999999999987632333 46889999977899999999999999988763
No 22
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=47.48 E-value=12 Score=27.77 Aligned_cols=55 Identities=7% Similarity=0.163 Sum_probs=42.8
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCC
Q 016177 271 ELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (394)
Q Consensus 271 ~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~ 328 (394)
.|++.++...|.++|...-=.++ ..|..|..|..-+|-||+.+.++...|..+|-
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 56 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFD 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhC
Confidence 57888888889888877532333 46889999978899999999999999998875
No 23
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.75 E-value=23 Score=27.73 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=46.1
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCC
Q 016177 268 GVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (394)
Q Consensus 268 G~~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~ 328 (394)
++..|++.++...|.++|...-=.++ ..|..|..|..-+|.||+.+.+|...|..+|-
T Consensus 7 ~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~le~~fg 64 (99)
T 2dnw_A 7 GMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFG 64 (99)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 46679999999999999987532233 46778888855589999999999999998874
No 24
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=41.60 E-value=15 Score=27.11 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=42.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCCCCCCccccChhHHhhhccCccChhhHHHHHhccCC
Q 016177 127 ELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (394)
Q Consensus 127 ~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cDe~Lk~lFg~d~i~~f~m~k~L~~Hl~ 184 (394)
.|+|.++...|.++|.+.-=.++ ..|..|..|..-+|-|++.+.+|...|..+|.
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 56 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFD 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhC
Confidence 47888888888888887643333 35889999977899999999999999999874
No 25
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=41.55 E-value=31 Score=28.44 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=29.3
Q ss_pred HHHHhcCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh
Q 016177 12 RDILRNSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQIDLFLQ 56 (394)
Q Consensus 12 ~~IL~~sDL~tvT~k~IR~~LE~~fGvDLs~kK~~I~~~I~~~l~ 56 (394)
.-+.+.-..+.||...|++++++ ||++.++ +.|..+++..+.
T Consensus 15 ~~~~~~~~~~~Vsae~L~eEfde-fGi~~~d--~VldKc~ELC~~ 56 (101)
T 2keb_A 15 EVLFQGPGSMSASAQQLAEELQI-FGLDCEE--ALIEKLVELCVQ 56 (101)
T ss_dssp ---------CCCCHHHHHHHHHH-HTCBCCH--HHHHHHHHHHHH
T ss_pred hheeeCCchhhccHHHHHHHHHH-cCCCCCH--HHHHHHHHHHHH
Confidence 34456667889999999999975 9999999 788888887765
No 26
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=40.26 E-value=32 Score=25.22 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCC
Q 016177 272 LARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (394)
Q Consensus 272 ~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~ 328 (394)
|+|.++...|.++|...-=.++ ..|-.|..|..-+|.||+.+.++...|..+|.
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fg 56 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFD 56 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccCCChHHHHHHHHHHHHHhC
Confidence 7899998999888887532222 36788888876689999999999999999874
No 27
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=38.66 E-value=27 Score=25.72 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCC
Q 016177 272 LARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (394)
Q Consensus 272 ~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~ 328 (394)
|+|.++...|.++|.+.-=.++ ..|-.|..|..-+|.||+.+.++...|..+|.
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~fg 55 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEYG 55 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHC
Confidence 6888888888888877532232 45888888877899999999999999998764
No 28
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.66 E-value=20 Score=28.11 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=47.2
Q ss_pred hhCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCccccChhHHhhhccCccChhhHHHHHhccCC
Q 016177 122 VVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (394)
Q Consensus 122 ~lG~~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cDe~Lk~lFg~d~i~~f~m~k~L~~Hl~ 184 (394)
+.+...|++.+|...|.++|.+.-=.++ ..|..|..|..-+|-|++.+.+|...|..+|-
T Consensus 5 ~~~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~le~~fg 64 (99)
T 2dnw_A 5 SSGMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFG 64 (99)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 3456679999999999999987632333 35888888855578999999999999998874
No 29
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=33.57 E-value=27 Score=27.83 Aligned_cols=40 Identities=38% Similarity=0.475 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhcCCC--------------CCcCHHHHHHHHHHHhCCCChhhH
Q 016177 5 SDLVTRLRDILRNSDL--------------DTATAGSVRRLLEEDFKVDLSDRK 44 (394)
Q Consensus 5 ~ei~~~I~~IL~~sDL--------------~tvT~k~IR~~LE~~fGvDLs~kK 44 (394)
+.+...|-.||.-.+. +.+..=.||..|++.||+.|+..-
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~ 62 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVRE 62 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHH
Confidence 5678888899876543 344456789999999999998543
No 30
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=33.43 E-value=42 Score=24.53 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCCCCCccccChhHHhhhccCccChhhHHHHHhccCC
Q 016177 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (394)
Q Consensus 128 ~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cDe~Lk~lFg~d~i~~f~m~k~L~~Hl~ 184 (394)
|+|.++...|.++|.+.-=.++ ..|..|..|..-+|-|++.+.++...|..++.
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fg 56 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFD 56 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccCCChHHHHHHHHHHHHHhC
Confidence 7899999999988887543333 35888888866678899999999999999874
No 31
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=32.55 E-value=30 Score=25.92 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCC
Q 016177 273 ARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (394)
Q Consensus 273 sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~ 328 (394)
++.++...|-+||.+.--.++ ..|..|..|..+-+-||+.+.+|.-.|..+|-
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~fg 53 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQFG 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHhC
Confidence 356788888888887652232 34788999988766999999999999999874
No 32
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=31.85 E-value=22 Score=25.98 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCC
Q 016177 272 LARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (394)
Q Consensus 272 ~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~ 328 (394)
|+|.++...|.++|...-=.++ ..|-.|..|..-+|.||+.+.+|...|..+|.
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fg 54 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEP---EKVTLEARFIEDLGADSLDTVELIMGLEDEFG 54 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCG---GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHC
Confidence 6788888888887776421222 45778888877789999999999999988764
No 33
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=31.59 E-value=40 Score=24.77 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCCCCCccccChhHHhhhccCccChhhHHHHHhccCC
Q 016177 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (394)
Q Consensus 128 ~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cDe~Lk~lFg~d~i~~f~m~k~L~~Hl~ 184 (394)
|+|.++...|.++|.+.-=.++ ..|..|..|..-+|-|++.+.++...|..++.
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~fg 55 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEYG 55 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHC
Confidence 6788888888888877532333 35889999877788999999999999998763
No 34
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=29.50 E-value=50 Score=26.57 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=0.0
Q ss_pred CC--ChhHHHHHHHHHHhcC----------------------CCCCcCHHHHHHHHHHHhCCCChh
Q 016177 1 MV--SDSDLVTRLRDILRNS----------------------DLDTATAGSVRRLLEEDFKVDLSD 42 (394)
Q Consensus 1 mv--Sd~ei~~~I~~IL~~s----------------------DL~tvT~k~IR~~LE~~fGvDLs~ 42 (394)
|+ +.++|...|.+||+.. .++++..=.+.-.||+.||+.+.+
T Consensus 12 m~~~~~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~ 77 (107)
T 3ce7_A 12 VVDTDINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPD 77 (107)
T ss_dssp CCTTCHHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred CccCCHHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCH
No 35
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=27.13 E-value=40 Score=23.20 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=16.5
Q ss_pred CCCCcCHHHHHHHHHHHhCCCC
Q 016177 19 DLDTATAGSVRRLLEEDFKVDL 40 (394)
Q Consensus 19 DL~tvT~k~IR~~LE~~fGvDL 40 (394)
.|+-.-...+.+.||++|||+-
T Consensus 12 ~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCCS
T ss_pred hCcHHHHHHHHHHHHHHHCCCc
Confidence 3333346788999999999974
No 36
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=25.58 E-value=57 Score=26.18 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCCC
Q 016177 271 ELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWP 329 (394)
Q Consensus 271 ~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~p 329 (394)
.|++.++...|.++|...-=.++ ..|-.|..|..-+|.||+.+.+|.-.|..+|.-
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi 57 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGV 57 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccCCCHHHHHHHHHHHHHHHCC
Confidence 37889999999888887532233 468888888777999999999999999988754
No 37
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=25.46 E-value=12 Score=28.48 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=44.9
Q ss_pred cccHHHHHHHHHHHHHHcC-CCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCCC
Q 016177 271 ELARTEVVKKLWAYIREKN-LQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWP 329 (394)
Q Consensus 271 ~~sR~eVvk~lW~YIK~n~-LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~p 329 (394)
.|+|.+|...|+++|.+.- +.+ -+...|..|..|..-+|-||+.+.+|.-.|..+|--
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~-~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi 61 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLND-EQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSL 61 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCH-HHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-CCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCC
Confidence 5889999999999998753 211 012357788888777899999999999999988743
No 38
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=24.63 E-value=1.4e+02 Score=21.72 Aligned_cols=40 Identities=8% Similarity=0.121 Sum_probs=33.2
Q ss_pred cCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhh
Q 016177 17 NSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQIDLFLQT 57 (394)
Q Consensus 17 ~sDL~tvT~k~IR~~LE~~fGvDLs~kK~~I~~~I~~~l~~ 57 (394)
..|+..+|+..++..|.. .|...+-.|+.+-+.|..++..
T Consensus 7 ~~~l~klkV~eLK~~L~~-rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 7 GVELHKLKLAELKQECLA-RGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp CCCTTTSCHHHHHHHHHH-HTCCCCSCHHHHHHHHHHHHHH
T ss_pred ccCHHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHhc
Confidence 467889999999998876 6899888898888888888864
No 39
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=24.57 E-value=68 Score=23.53 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCC
Q 016177 273 ARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (394)
Q Consensus 273 sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~ 328 (394)
||.++...|.+.|...=-.++. ..|-.|..|. =+|.||+.+.+|...|..+|-
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~fg 53 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEFG 53 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHHC
Confidence 4667777777777765322322 2678888887 479999999999999998874
No 40
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=24.44 E-value=81 Score=24.45 Aligned_cols=41 Identities=17% Similarity=0.420 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhCCCChhh
Q 016177 2 VSDSDLVTRLRDILRNSDLD-TATAGSVRRLLEEDFKVDLSDR 43 (394)
Q Consensus 2 vSd~ei~~~I~~IL~~sDL~-tvT~k~IR~~LE~~fGvDLs~k 43 (394)
+|.+.|...|.+|+..-|.. -.|-.+|...|++. |++++-+
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRR 57 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARR 57 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHH
Confidence 57889999999999999975 57899999999887 9998743
No 41
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=23.14 E-value=32 Score=25.04 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCCCCCccccChhHHhhhccCccChhhHHHHHhccCC
Q 016177 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (394)
Q Consensus 128 ~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cDe~Lk~lFg~d~i~~f~m~k~L~~Hl~ 184 (394)
|+|.++...|.++|.+.-=.++ ..|..|..|..-+|-|++.+.+|...|..++.
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fg 54 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEP---EKVTLEARFIEDLGADSLDTVELIMGLEDEFG 54 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCG---GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHC
Confidence 5788888888887776421232 35788888867788999999999999998763
No 42
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=22.48 E-value=36 Score=28.02 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=42.3
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCCC
Q 016177 268 GVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWP 329 (394)
Q Consensus 268 G~~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~p 329 (394)
+...| |.+|...|.++|.+.- . |..|..|..-+|-||+.+.+|.-.|...|--
T Consensus 23 ~~~~M-~~ei~~~v~~il~e~l-~-------I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI 75 (113)
T 2cgq_A 23 FQGAM-EEAINATIQRILRTDR-G-------ITANQVLVDDLGFDSLKLFQLITELEDEFDI 75 (113)
T ss_dssp ---CH-HHHHHHHHHHHHTCCS-C-------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTC
T ss_pred hcccc-HHHHHHHHHHHHHHHh-C-------CCCCCchhhhcCCCHHHHHHHHHHHHHHhCC
Confidence 44467 8999999999998653 1 8888888888999999999999999887643
No 43
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=21.74 E-value=1.1e+02 Score=23.69 Aligned_cols=42 Identities=31% Similarity=0.385 Sum_probs=31.1
Q ss_pred ChhHHHHHHHHHHhcC---C--------------CCCcCHHHHHHHHHHHhCCCChhhH
Q 016177 3 SDSDLVTRLRDILRNS---D--------------LDTATAGSVRRLLEEDFKVDLSDRK 44 (394)
Q Consensus 3 Sd~ei~~~I~~IL~~s---D--------------L~tvT~k~IR~~LE~~fGvDLs~kK 44 (394)
+-++|...|.++|... + ++++..=.+...||+.||+.+....
T Consensus 5 t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~ 63 (95)
T 1nq4_A 5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDA 63 (95)
T ss_dssp CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTH
T ss_pred cHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHH
Confidence 5678888899988753 1 2334456889999999999998543
No 44
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=21.37 E-value=65 Score=23.95 Aligned_cols=52 Identities=10% Similarity=-0.007 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCCCCC-CCCccccchhhhhhhccCccChhhHHHHHhccCCC
Q 016177 277 VVKKLWAYIREKNLQDPK-NRRNIICDEALQVLFRVNSINMFQMNKALTRHIWP 329 (394)
Q Consensus 277 Vvk~lW~YIK~n~LqDP~-nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~p 329 (394)
+...|+++|...=-.++. .-..|-.|..| .=+|.||+.+.+|.-.|..+|--
T Consensus 6 ~~~~l~~il~~~l~~~~~~~~~~i~~~~~l-~dlG~DSL~~vel~~~le~~fgi 58 (86)
T 1af8_A 6 TTDDLRRALVECAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYGV 58 (86)
T ss_dssp CHHHHHHHHHTTCCCCSCCCTTTCSSTTST-TTTTCCTTTHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHHhCCCcccccccCCCCCCh-hhcCCCHHHHHHHHHHHHHHHCC
Confidence 444555555543222332 11257788888 55799999999999999988754
No 45
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=21.29 E-value=1.3e+02 Score=25.10 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=39.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHHHH
Q 016177 3 SDSDLVTRLRDILRNSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQIDL 53 (394)
Q Consensus 3 Sd~ei~~~I~~IL~~sDL~tvT~k~IR~~LE~~fGvDLs~kK~~I~~~I~~ 53 (394)
|++++..+-.+.....|++- -.||+.|...||.||-+-=+.|.+....
T Consensus 7 t~eeF~aRy~~~F~~~~iD~---~e~rrglN~l~~~DlVP~P~ii~aaLrA 54 (109)
T 1v54_E 7 TDEEFDARWVTYFNKPDIDA---WELRKGMNTLVGYDLVPEPKIIDAALRA 54 (109)
T ss_dssp CHHHHHHHHHHHHTCTTCCH---HHHHHHHHHHTTSSBCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCcCccH---HHHHHHHHHHhccccCCCcHHHHHHHHH
Confidence 78888888888888888764 4599999999999999877777665543
No 46
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=20.99 E-value=72 Score=25.56 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=44.3
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCCCCCCccccChhHHhhhccCccChhhHHHHHhccCC
Q 016177 127 ELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (394)
Q Consensus 127 ~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cDe~Lk~lFg~d~i~~f~m~k~L~~Hl~ 184 (394)
.|++.+|...|..+|.+.==.++ ..|..|..|..-+|-|++.+.+|.-.|..+|.
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fg 56 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYG 56 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccCCCHHHHHHHHHHHHHHHC
Confidence 37889999999888887532333 35888888877789999999999999999874
No 47
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=20.91 E-value=69 Score=25.44 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=45.6
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHhccCCC
Q 016177 270 SELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWP 329 (394)
Q Consensus 270 ~~~sR~eVvk~lW~YIK~n~LqDP~nkr~I~CD~kLk~LFg~d~i~~~~m~klL~~Hl~p 329 (394)
..|-|.++...|+++|...-=.++ ..|..|..| .-+|.||+.+.+|.-.|...|--
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dLGlDSL~~veL~~~LE~~fgi 66 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KELGFDSIDVIDLVMFFEDEFAL 66 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTTTCCHHHHHHHHHHHHHHHTC
T ss_pred hhccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHcCCchHHHHHHHHHHHHHHCC
Confidence 368899999999999988543333 468899999 67899999999999999887643
No 48
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.36 E-value=1.1e+02 Score=26.72 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh
Q 016177 10 RLRDILRNSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQIDLFLQ 56 (394)
Q Consensus 10 ~I~~IL~~sDL~tvT~k~IR~~LE~~fGvDLs~kK~~I~~~I~~~l~ 56 (394)
.|.+....-.|...|...+|..|.+. |+..+.+|+.+=+.|..+|+
T Consensus 51 ~i~~l~~~g~L~kltV~eLK~~l~~~-gL~~~GkKadLI~Ri~~~l~ 96 (151)
T 1jjr_A 51 ELKTHISKGTLGKFTVPMLKEACRAY-GLKSGLKKQELLEALTKHFQ 96 (151)
T ss_dssp HHHHHHHHTCTTSSCHHHHHHHHHHH-TCCCCSSSHHHHHHHHHTTC
T ss_pred HHHHHHHcCcHHhccHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHh
Confidence 34456688999999999999999987 88888899877777777775
Done!