Query 016178
Match_columns 394
No_of_seqs 303 out of 1387
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2772 Transaldolase [Carbohy 100.0 4.6E-87 9.9E-92 640.4 27.9 323 58-394 13-337 (337)
2 PTZ00411 transaldolase-like pr 100.0 5E-84 1.1E-88 640.9 30.6 314 57-388 1-329 (333)
3 PRK12346 transaldolase A; Prov 100.0 1E-83 2.2E-88 634.3 31.5 311 59-388 2-315 (316)
4 TIGR00874 talAB transaldolase. 100.0 2.2E-82 4.8E-87 625.5 30.8 311 59-388 1-316 (317)
5 cd00957 Transaldolase_TalAB Tr 100.0 2.9E-81 6.3E-86 617.4 29.7 308 59-385 1-313 (313)
6 PRK05269 transaldolase B; Prov 100.0 2E-80 4.4E-85 613.2 30.4 313 57-388 1-316 (318)
7 PRK12309 transaldolase/EF-hand 100.0 2.5E-80 5.5E-85 627.2 31.1 314 57-388 2-322 (391)
8 PRK03343 transaldolase; Valida 100.0 3.9E-60 8.4E-65 474.9 24.2 304 56-387 12-361 (368)
9 COG0176 MipB Transaldolase [Ca 100.0 4.1E-60 8.9E-65 449.0 18.5 232 61-386 1-238 (239)
10 PF00923 Transaldolase: Transa 100.0 3.2E-58 6.9E-63 449.9 20.5 281 70-385 1-287 (287)
11 cd00955 Transaldolase_like Tra 100.0 7.3E-57 1.6E-61 447.3 22.2 291 58-379 1-337 (338)
12 cd00439 Transaldolase Transald 100.0 4.1E-55 8.9E-60 421.1 21.6 234 70-315 2-241 (252)
13 TIGR00876 tal_mycobact transal 100.0 6.3E-50 1.4E-54 397.7 24.5 301 56-383 2-349 (350)
14 TIGR00875 fsa_talC_mipB fructo 100.0 2.5E-50 5.4E-55 379.2 15.1 195 69-321 2-198 (213)
15 PRK01362 putative translaldola 100.0 1.1E-49 2.5E-54 374.9 15.3 192 69-322 2-199 (214)
16 PRK12656 fructose-6-phosphate 100.0 3.9E-48 8.5E-53 366.0 14.4 197 69-321 2-202 (222)
17 PRK12655 fructose-6-phosphate 100.0 4.5E-48 9.8E-53 365.4 14.4 191 69-321 2-200 (220)
18 PRK12653 fructose-6-phosphate 100.0 7.1E-48 1.5E-52 364.1 14.6 195 69-321 2-200 (220)
19 PRK09533 bifunctional transald 100.0 9.5E-47 2.1E-51 413.7 24.6 304 55-386 10-368 (948)
20 PRK03903 transaldolase; Provis 100.0 1.1E-45 2.4E-50 357.9 20.5 236 119-384 18-273 (274)
21 cd00956 Transaldolase_FSA Tran 100.0 2.4E-45 5.2E-50 345.1 17.0 193 70-323 2-200 (211)
22 PRK12376 putative translaldola 100.0 2E-45 4.4E-50 350.2 13.7 191 69-317 7-208 (236)
23 TIGR02134 transald_staph trans 100.0 1.6E-44 3.5E-49 343.7 12.7 187 69-317 7-208 (236)
24 TIGR02134 transald_staph trans 94.0 1.7 3.6E-05 42.3 14.1 37 209-245 171-207 (236)
25 PRK01362 putative translaldola 93.8 0.63 1.4E-05 44.4 10.5 50 197-246 139-194 (214)
26 CHL00162 thiG thiamin biosynth 93.7 0.66 1.4E-05 45.6 10.7 128 160-309 79-219 (267)
27 PRK12656 fructose-6-phosphate 93.4 1.5 3.2E-05 42.3 12.4 157 72-246 8-198 (222)
28 TIGR00875 fsa_talC_mipB fructo 92.6 0.88 1.9E-05 43.4 9.6 153 72-245 8-193 (213)
29 cd02809 alpha_hydroxyacid_oxid 92.6 1.9 4.2E-05 42.7 12.4 142 148-317 114-265 (299)
30 PRK12655 fructose-6-phosphate 92.4 1.2 2.5E-05 42.8 10.1 50 197-246 141-196 (220)
31 PRK12376 putative translaldola 91.3 14 0.0003 36.0 16.2 38 209-246 171-208 (236)
32 cd04728 ThiG Thiazole synthase 90.8 1.7 3.6E-05 42.6 9.4 125 160-312 71-208 (248)
33 PF05690 ThiG: Thiazole biosyn 90.4 2.5 5.4E-05 41.2 10.1 142 143-311 53-207 (247)
34 PRK00208 thiG thiazole synthas 90.3 1.7 3.7E-05 42.5 8.9 128 157-312 68-208 (250)
35 PRK12653 fructose-6-phosphate 90.2 4.2 9.1E-05 39.0 11.5 37 210-246 160-196 (220)
36 PRK06806 fructose-bisphosphate 90.0 0.98 2.1E-05 44.8 7.2 136 150-313 97-235 (281)
37 TIGR03128 RuMP_HxlA 3-hexulose 87.9 3.4 7.4E-05 38.1 9.0 110 169-309 12-134 (206)
38 COG5016 Pyruvate/oxaloacetate 86.9 3.9 8.5E-05 42.8 9.3 89 143-239 136-237 (472)
39 PF03740 PdxJ: Pyridoxal phosp 86.8 7.7 0.00017 37.8 10.8 94 133-245 51-160 (239)
40 PTZ00314 inosine-5'-monophosph 82.8 16 0.00035 39.1 12.1 120 167-311 242-376 (495)
41 PRK12331 oxaloacetate decarbox 82.5 11 0.00024 39.9 10.6 133 95-239 87-231 (448)
42 cd00003 PNPsynthase Pyridoxine 82.5 15 0.00033 35.7 10.7 94 133-245 50-159 (234)
43 PRK11858 aksA trans-homoaconit 80.7 15 0.00032 37.9 10.6 134 160-309 21-166 (378)
44 PRK06015 keto-hydroxyglutarate 80.7 7.6 0.00016 36.8 7.9 71 162-240 13-87 (201)
45 PF01729 QRPTase_C: Quinolinat 80.6 3 6.4E-05 38.4 5.0 86 197-308 68-155 (169)
46 COG2022 ThiG Uncharacterized e 80.2 16 0.00034 35.8 9.8 99 193-311 114-214 (262)
47 PRK05718 keto-hydroxyglutarate 80.1 9 0.00019 36.5 8.2 72 161-240 23-98 (212)
48 TIGR00559 pdxJ pyridoxine 5'-p 80.0 22 0.00047 34.7 10.8 94 133-245 50-159 (237)
49 PRK05265 pyridoxine 5'-phospha 79.6 25 0.00054 34.3 11.1 94 133-245 53-162 (239)
50 PRK00043 thiE thiamine-phospha 79.3 27 0.0006 31.9 11.1 103 193-312 88-192 (212)
51 cd00564 TMP_TenI Thiamine mono 79.3 37 0.00081 30.2 11.7 97 199-313 85-183 (196)
52 TIGR01302 IMP_dehydrog inosine 79.2 14 0.00031 38.9 10.1 128 165-311 223-359 (450)
53 PRK13398 3-deoxy-7-phosphohept 78.2 39 0.00084 33.3 12.2 122 150-281 26-162 (266)
54 PRK01130 N-acetylmannosamine-6 77.6 10 0.00022 35.6 7.8 125 151-307 8-145 (221)
55 PRK11840 bifunctional sulfur c 77.4 16 0.00035 37.2 9.4 124 160-311 145-281 (326)
56 PRK07114 keto-hydroxyglutarate 77.4 11 0.00024 36.3 7.9 71 162-240 24-102 (222)
57 PRK05848 nicotinate-nucleotide 77.3 4.7 0.0001 39.9 5.6 85 199-309 169-258 (273)
58 cd03321 mandelate_racemase Man 76.8 36 0.00079 34.4 12.0 113 141-283 176-291 (355)
59 cd03315 MLE_like Muconate lact 76.4 52 0.0011 31.6 12.5 112 142-283 120-234 (265)
60 TIGR01859 fruc_bis_ald_ fructo 76.3 20 0.00044 35.5 9.8 141 149-317 96-239 (282)
61 TIGR01182 eda Entner-Doudoroff 75.7 15 0.00032 34.9 8.3 69 162-238 17-89 (204)
62 PRK14042 pyruvate carboxylase 75.5 31 0.00067 38.0 11.7 130 95-238 87-230 (596)
63 PRK06552 keto-hydroxyglutarate 75.4 14 0.0003 35.2 8.0 72 162-240 22-99 (213)
64 cd00452 KDPG_aldolase KDPG and 74.7 5.4 0.00012 36.7 5.0 95 192-315 82-178 (190)
65 PF01081 Aldolase: KDPG and KH 74.1 16 0.00034 34.5 7.9 70 162-239 17-90 (196)
66 PLN02746 hydroxymethylglutaryl 73.8 24 0.00053 36.2 9.8 134 160-309 63-218 (347)
67 PRK12581 oxaloacetate decarbox 73.5 28 0.00061 37.2 10.5 123 99-235 100-236 (468)
68 PLN02535 glycolate oxidase 73.3 11 0.00024 38.9 7.2 106 193-320 209-319 (364)
69 cd03174 DRE_TIM_metallolyase D 72.6 19 0.0004 34.2 8.2 136 160-310 14-168 (265)
70 cd07939 DRE_TIM_NifV Streptomy 71.8 23 0.00049 34.3 8.7 135 160-309 15-160 (259)
71 TIGR01108 oadA oxaloacetate de 71.2 29 0.00062 38.1 10.2 134 96-241 83-228 (582)
72 PRK12330 oxaloacetate decarbox 70.1 36 0.00079 36.6 10.5 135 95-241 88-236 (499)
73 PRK07107 inosine 5-monophospha 69.9 26 0.00055 37.7 9.3 127 166-311 242-384 (502)
74 cd04737 LOX_like_FMN L-Lactate 69.6 22 0.00049 36.4 8.5 105 194-320 208-317 (351)
75 cd04726 KGPDC_HPS 3-Keto-L-gul 69.1 16 0.00035 33.3 6.8 92 190-307 29-132 (202)
76 PRK14041 oxaloacetate decarbox 69.0 34 0.00073 36.6 9.9 132 96-239 87-230 (467)
77 TIGR02151 IPP_isom_2 isopenten 68.6 92 0.002 31.5 12.6 114 200-317 169-292 (333)
78 cd03319 L-Ala-DL-Glu_epimerase 68.4 84 0.0018 31.0 12.2 111 142-283 169-282 (316)
79 PF09370 TIM-br_sig_trns: TIM- 68.3 41 0.00089 33.4 9.6 99 134-242 65-182 (268)
80 TIGR02660 nifV_homocitr homoci 68.0 22 0.00049 36.3 8.1 136 160-310 18-164 (365)
81 cd03324 rTSbeta_L-fuconate_deh 67.9 63 0.0014 33.8 11.6 111 143-283 232-348 (415)
82 PRK05692 hydroxymethylglutaryl 67.6 40 0.00086 33.5 9.6 134 160-309 21-176 (287)
83 PRK09282 pyruvate carboxylase 67.3 43 0.00094 36.8 10.6 133 96-240 88-236 (592)
84 PRK07428 nicotinate-nucleotide 67.1 8.6 0.00019 38.4 4.8 98 186-309 167-272 (288)
85 PF01645 Glu_synthase: Conserv 67.1 26 0.00056 36.3 8.3 129 143-315 165-310 (368)
86 PF01070 FMN_dh: FMN-dependent 66.2 17 0.00038 37.2 6.9 105 194-320 212-321 (356)
87 PRK06096 molybdenum transport 66.1 13 0.00028 37.2 5.7 67 218-309 197-265 (284)
88 PRK05567 inosine 5'-monophosph 66.1 15 0.00033 39.0 6.7 128 167-311 229-363 (486)
89 cd03328 MR_like_3 Mandelate ra 65.2 85 0.0018 31.8 11.7 113 142-284 173-290 (352)
90 cd03332 LMO_FMN L-Lactate 2-mo 64.3 37 0.00079 35.4 8.9 106 193-320 239-349 (383)
91 cd02811 IDI-2_FMN Isopentenyl- 63.9 38 0.00083 34.1 8.8 112 200-317 168-293 (326)
92 PF03437 BtpA: BtpA family; I 63.8 22 0.00048 35.0 6.8 86 150-235 7-108 (254)
93 cd04741 DHOD_1A_like Dihydroor 63.5 1.2E+02 0.0025 30.1 12.0 104 136-241 144-276 (294)
94 cd02922 FCB2_FMN Flavocytochro 61.4 38 0.00082 34.7 8.3 107 194-319 200-311 (344)
95 PRK05437 isopentenyl pyrophosp 61.3 1E+02 0.0022 31.5 11.4 117 199-318 175-300 (352)
96 TIGR00977 LeuA_rel 2-isopropyl 61.0 25 0.00054 38.0 7.2 137 158-309 16-175 (526)
97 cd03329 MR_like_4 Mandelate ra 60.9 1.2E+02 0.0025 30.9 11.8 112 142-283 180-295 (368)
98 TIGR01334 modD putative molybd 59.9 16 0.00034 36.4 5.0 82 201-308 178-263 (277)
99 cd03322 rpsA The starvation se 59.7 1.5E+02 0.0033 30.1 12.3 115 139-283 151-268 (361)
100 cd03325 D-galactonate_dehydrat 59.7 1E+02 0.0022 31.1 11.1 112 142-283 167-281 (352)
101 PRK00366 ispG 4-hydroxy-3-meth 59.6 44 0.00096 34.5 8.3 146 151-308 27-180 (360)
102 TIGR00693 thiE thiamine-phosph 59.0 1.4E+02 0.003 27.0 11.4 96 200-312 87-184 (196)
103 smart00052 EAL Putative diguan 58.8 1.4E+02 0.0031 27.1 13.1 137 149-306 84-229 (241)
104 PRK14040 oxaloacetate decarbox 58.7 48 0.001 36.5 8.9 134 96-241 89-234 (593)
105 COG1891 Uncharacterized protei 57.9 26 0.00055 33.1 5.7 107 186-310 22-153 (235)
106 PRK05742 nicotinate-nucleotide 57.4 19 0.00042 35.7 5.2 94 186-309 161-262 (277)
107 cd04729 NanE N-acetylmannosami 57.3 25 0.00053 33.0 5.8 90 194-307 47-149 (219)
108 cd03327 MR_like_2 Mandelate ra 57.1 1.2E+02 0.0027 30.4 11.1 111 143-283 163-276 (341)
109 cd07948 DRE_TIM_HCS Saccharomy 56.6 77 0.0017 31.0 9.2 134 160-308 17-161 (262)
110 PRK09261 phospho-2-dehydro-3-d 56.5 51 0.0011 34.0 8.2 86 142-228 44-155 (349)
111 cd00381 IMPDH IMPDH: The catal 56.4 44 0.00095 33.7 7.7 98 197-312 121-230 (325)
112 PRK07896 nicotinate-nucleotide 56.2 10 0.00022 38.0 3.0 84 200-309 188-275 (289)
113 PRK15072 bifunctional D-altron 56.0 1.4E+02 0.0031 30.8 11.6 115 139-283 194-311 (404)
114 cd03316 MR_like Mandelate race 55.9 1.3E+02 0.0028 30.1 11.0 110 143-282 181-293 (357)
115 PRK09485 mmuM homocysteine met 55.3 2.2E+02 0.0049 28.3 12.9 85 132-218 87-190 (304)
116 PRK00507 deoxyribose-phosphate 55.3 1E+02 0.0022 29.5 9.7 154 135-315 43-217 (221)
117 PRK12755 phospho-2-dehydro-3-d 55.1 59 0.0013 33.6 8.3 85 142-227 45-155 (353)
118 PRK07315 fructose-bisphosphate 55.1 78 0.0017 31.6 9.1 137 149-313 98-237 (293)
119 TIGR03128 RuMP_HxlA 3-hexulose 54.8 47 0.001 30.5 7.1 105 187-312 78-190 (206)
120 COG0119 LeuA Isopropylmalate/h 54.4 61 0.0013 34.0 8.6 139 158-311 17-169 (409)
121 PRK09389 (R)-citramalate synth 54.3 72 0.0016 34.2 9.3 137 159-310 18-165 (488)
122 PRK05660 HemN family oxidoredu 54.2 1.2E+02 0.0026 31.1 10.6 81 151-242 95-199 (378)
123 PRK13347 coproporphyrinogen II 53.7 44 0.00095 35.1 7.5 77 150-237 139-239 (453)
124 PRK08446 coproporphyrinogen II 53.1 2.6E+02 0.0056 28.3 13.9 45 197-241 135-189 (350)
125 cd03323 D-glucarate_dehydratas 52.1 1.8E+02 0.004 30.0 11.6 108 142-283 205-315 (395)
126 PRK12457 2-dehydro-3-deoxyphos 52.1 1.4E+02 0.003 30.0 10.2 124 152-281 17-158 (281)
127 PRK08385 nicotinate-nucleotide 52.0 21 0.00046 35.5 4.5 68 217-309 189-260 (278)
128 cd03326 MR_like_1 Mandelate ra 51.9 2E+02 0.0044 29.7 11.9 110 143-282 197-313 (385)
129 PRK07379 coproporphyrinogen II 51.6 67 0.0015 33.2 8.4 45 197-241 152-206 (400)
130 PRK08072 nicotinate-nucleotide 50.9 31 0.00067 34.3 5.5 96 185-309 158-261 (277)
131 PRK15440 L-rhamnonate dehydrat 50.3 2E+02 0.0042 29.9 11.5 111 143-283 200-315 (394)
132 cd04726 KGPDC_HPS 3-Keto-L-gul 49.9 42 0.00091 30.5 5.9 93 200-312 94-190 (202)
133 PRK08208 coproporphyrinogen II 49.8 1.8E+02 0.004 30.3 11.3 80 151-241 129-232 (430)
134 TIGR01361 DAHP_synth_Bsub phos 49.7 82 0.0018 30.9 8.2 119 156-281 30-160 (260)
135 PRK06582 coproporphyrinogen II 49.6 92 0.002 32.2 9.0 80 151-241 99-201 (390)
136 TIGR02090 LEU1_arch isopropylm 48.8 1.2E+02 0.0027 30.9 9.7 136 160-310 17-163 (363)
137 PRK07259 dihydroorotate dehydr 48.7 2.7E+02 0.0059 27.3 11.9 44 198-241 222-267 (301)
138 PRK09140 2-dehydro-3-deoxy-6-p 48.6 33 0.00072 32.4 5.1 94 192-313 89-184 (206)
139 PLN02979 glycolate oxidase 48.5 66 0.0014 33.4 7.6 106 193-320 209-319 (366)
140 TIGR02534 mucon_cyclo muconate 48.2 2.8E+02 0.006 28.1 12.1 111 143-283 179-292 (368)
141 cd07947 DRE_TIM_Re_CS Clostrid 48.0 1.4E+02 0.003 29.6 9.6 82 194-284 48-132 (279)
142 PRK09249 coproporphyrinogen II 48.0 1.5E+02 0.0033 31.1 10.4 78 150-238 138-239 (453)
143 PRK06294 coproporphyrinogen II 47.6 82 0.0018 32.2 8.2 78 150-238 90-191 (370)
144 TIGR02708 L_lactate_ox L-lacta 47.6 55 0.0012 33.9 6.9 105 194-320 215-324 (367)
145 cd01568 QPRTase_NadC Quinolina 46.9 36 0.00078 33.5 5.2 85 197-308 169-255 (269)
146 cd07945 DRE_TIM_CMS Leptospira 46.7 1.2E+02 0.0026 30.0 8.9 138 158-309 12-168 (280)
147 TIGR00612 ispG_gcpE 1-hydroxy- 46.7 3.5E+02 0.0076 28.0 12.2 148 151-308 19-171 (346)
148 cd03320 OSBS o-Succinylbenzoat 46.1 2.5E+02 0.0054 27.0 10.9 111 142-283 118-230 (263)
149 cd04730 NPD_like 2-Nitropropan 45.8 2.5E+02 0.0055 26.1 11.0 104 192-315 86-192 (236)
150 cd06556 ICL_KPHMT Members of t 45.1 3E+02 0.0065 26.7 12.0 92 136-235 59-174 (240)
151 PRK09057 coproporphyrinogen II 45.0 94 0.002 31.8 8.2 80 197-283 141-235 (380)
152 PLN03033 2-dehydro-3-deoxyphos 44.5 2.3E+02 0.0049 28.6 10.3 125 152-282 17-159 (290)
153 PRK09058 coproporphyrinogen II 44.4 2.1E+02 0.0045 30.1 10.8 81 150-241 150-254 (449)
154 PRK05692 hydroxymethylglutaryl 44.4 1.4E+02 0.0031 29.6 9.0 98 136-241 124-235 (287)
155 PRK05628 coproporphyrinogen II 44.3 1E+02 0.0022 31.4 8.3 44 197-240 145-198 (375)
156 cd03318 MLE Muconate Lactonizi 44.2 3.4E+02 0.0074 27.3 12.0 111 143-283 180-293 (365)
157 PRK05198 2-dehydro-3-deoxyphos 43.9 2.5E+02 0.0053 28.0 10.4 124 152-281 11-152 (264)
158 PRK06552 keto-hydroxyglutarate 43.9 44 0.00095 31.8 5.2 107 169-312 79-187 (213)
159 PRK00915 2-isopropylmalate syn 43.2 1.4E+02 0.0029 32.2 9.3 136 160-310 21-171 (513)
160 PRK03343 transaldolase; Valida 43.1 8.9 0.00019 39.7 0.3 52 57-112 1-55 (368)
161 PRK05799 coproporphyrinogen II 42.9 1.1E+02 0.0024 30.9 8.3 77 151-238 87-187 (374)
162 cd07943 DRE_TIM_HOA 4-hydroxy- 42.9 1.8E+02 0.0038 28.1 9.3 96 161-283 137-244 (263)
163 PLN02489 homocysteine S-methyl 42.8 2.7E+02 0.0059 28.2 11.0 51 164-216 162-215 (335)
164 PRK05904 coproporphyrinogen II 42.5 2.5E+02 0.0054 28.6 10.7 81 151-242 91-195 (353)
165 PF00563 EAL: EAL domain; Int 42.4 1.2E+02 0.0026 27.6 7.7 134 148-307 86-230 (236)
166 PRK07455 keto-hydroxyglutarate 42.3 37 0.00081 31.4 4.3 91 198-314 94-186 (187)
167 TIGR00078 nadC nicotinate-nucl 42.3 49 0.0011 32.6 5.3 83 197-308 166-250 (265)
168 TIGR00259 thylakoid_BtpA membr 42.2 1E+02 0.0022 30.4 7.5 78 157-236 16-108 (257)
169 TIGR01362 KDO8P_synth 3-deoxy- 42.2 1.7E+02 0.0036 29.1 8.9 114 162-281 13-144 (258)
170 PRK02048 4-hydroxy-3-methylbut 42.1 2.4E+02 0.0053 31.3 10.9 84 151-241 26-115 (611)
171 PRK12822 phospho-2-dehydro-3-d 41.8 86 0.0019 32.4 7.1 74 142-219 44-146 (356)
172 TIGR01303 IMP_DH_rel_1 IMP deh 41.3 90 0.0019 33.4 7.5 99 199-311 254-360 (475)
173 PRK07695 transcriptional regul 41.2 52 0.0011 30.3 5.2 85 209-312 95-181 (201)
174 PRK06801 hypothetical protein; 41.2 1.3E+02 0.0027 30.1 8.1 140 149-316 96-241 (286)
175 TIGR01037 pyrD_sub1_fam dihydr 40.4 3.6E+02 0.0079 26.3 14.0 67 199-283 223-291 (300)
176 PRK11197 lldD L-lactate dehydr 40.3 88 0.0019 32.6 7.1 106 193-320 231-341 (381)
177 PRK10060 RNase II stability mo 40.2 4.3E+02 0.0092 29.1 12.8 137 149-306 492-637 (663)
178 cd04729 NanE N-acetylmannosami 39.0 69 0.0015 30.0 5.6 94 199-312 112-210 (219)
179 cd01948 EAL EAL domain. This d 38.3 3.1E+02 0.0066 24.9 12.6 138 148-306 82-228 (240)
180 PRK01130 N-acetylmannosamine-6 37.8 1.5E+02 0.0034 27.6 7.8 107 186-311 90-205 (221)
181 cd07937 DRE_TIM_PC_TC_5S Pyruv 37.2 1.7E+02 0.0036 28.7 8.2 97 162-283 146-251 (275)
182 COG0800 Eda 2-keto-3-deoxy-6-p 37.1 92 0.002 29.9 6.1 100 161-278 21-125 (211)
183 cd01573 modD_like ModD; Quinol 37.0 91 0.002 30.8 6.3 83 200-308 172-258 (272)
184 TIGR00539 hemN_rel putative ox 36.7 1.5E+02 0.0031 30.1 8.0 43 197-239 137-189 (360)
185 COG0854 PdxJ Pyridoxal phospha 36.7 60 0.0013 31.6 4.8 87 144-245 58-160 (243)
186 PLN02493 probable peroxisomal 36.6 1.1E+02 0.0025 31.6 7.2 106 193-320 210-320 (367)
187 PLN02925 4-hydroxy-3-methylbut 36.5 4.8E+02 0.01 29.6 12.2 84 151-241 95-184 (733)
188 PRK14017 galactonate dehydrata 36.0 4E+02 0.0087 27.2 11.1 111 143-283 169-282 (382)
189 PLN02746 hydroxymethylglutaryl 35.9 2.1E+02 0.0045 29.5 8.9 101 135-241 165-277 (347)
190 cd07938 DRE_TIM_HMGL 3-hydroxy 35.7 2.6E+02 0.0057 27.4 9.4 109 160-284 15-131 (274)
191 cd04739 DHOD_like Dihydroorota 35.6 4.7E+02 0.01 26.2 11.4 128 137-283 151-295 (325)
192 cd07941 DRE_TIM_LeuA3 Desulfob 35.5 2.4E+02 0.0053 27.5 9.1 134 160-308 15-171 (273)
193 TIGR00538 hemN oxygen-independ 35.2 2.9E+02 0.0063 28.9 10.2 76 151-237 139-238 (455)
194 cd04740 DHOD_1B_like Dihydroor 35.2 4.3E+02 0.0094 25.7 12.5 44 198-241 219-264 (296)
195 cd01572 QPRTase Quinolinate ph 34.8 67 0.0014 31.6 5.0 83 197-308 170-254 (268)
196 PF04131 NanE: Putative N-acet 34.8 1E+02 0.0022 29.3 5.9 117 167-311 53-176 (192)
197 PRK12331 oxaloacetate decarbox 34.8 3.9E+02 0.0085 28.4 11.0 60 176-235 103-172 (448)
198 cd00739 DHPS DHPS subgroup of 34.8 1.6E+02 0.0035 28.7 7.6 53 164-216 145-205 (257)
199 PRK08091 ribulose-phosphate 3- 34.6 46 0.001 32.2 3.7 138 163-312 72-211 (228)
200 PRK14040 oxaloacetate decarbox 34.2 3.5E+02 0.0077 29.8 10.9 62 174-235 102-173 (593)
201 PRK13307 bifunctional formalde 33.3 2.1E+02 0.0046 29.9 8.6 111 169-307 185-305 (391)
202 TIGR01304 IMP_DH_rel_2 IMP deh 32.8 2.2E+02 0.0048 29.5 8.6 110 194-316 175-292 (369)
203 TIGR01927 menC_gamma/gm+ o-suc 32.3 5.1E+02 0.011 25.7 11.4 110 143-283 146-260 (307)
204 TIGR01163 rpe ribulose-phospha 32.1 3.9E+02 0.0084 24.2 12.3 113 187-312 82-197 (210)
205 PRK06512 thiamine-phosphate py 31.9 2.2E+02 0.0047 27.1 7.9 95 199-312 100-196 (221)
206 PRK08898 coproporphyrinogen II 31.9 2.4E+02 0.0051 29.1 8.7 82 150-242 109-213 (394)
207 cd00452 KDPG_aldolase KDPG and 31.9 1.6E+02 0.0034 27.0 6.7 66 162-234 13-80 (190)
208 PF08248 Tryp_FSAP: Tryptophyl 31.6 21 0.00045 19.0 0.4 7 387-393 3-9 (12)
209 PLN02424 ketopantoate hydroxym 31.5 3.4E+02 0.0074 27.9 9.5 70 137-213 83-155 (332)
210 PRK00694 4-hydroxy-3-methylbut 31.2 5.5E+02 0.012 28.5 11.4 85 151-242 30-120 (606)
211 cd07940 DRE_TIM_IPMS 2-isoprop 31.2 4.2E+02 0.0091 25.6 9.9 134 161-309 16-164 (268)
212 PRK12344 putative alpha-isopro 30.2 3.3E+02 0.0071 29.5 9.7 134 160-308 22-178 (524)
213 TIGR01108 oadA oxaloacetate de 29.8 5.1E+02 0.011 28.6 11.1 61 175-235 97-167 (582)
214 KOG4201 Anthranilate synthase 29.3 1.5E+02 0.0034 28.9 6.2 19 220-238 94-112 (289)
215 cd02803 OYE_like_FMN_family Ol 29.2 4.6E+02 0.01 25.7 10.0 99 137-237 194-311 (327)
216 PRK08599 coproporphyrinogen II 29.1 6.2E+02 0.013 25.6 13.2 76 151-237 88-187 (377)
217 PRK13561 putative diguanylate 29.0 5.9E+02 0.013 27.5 11.6 135 149-307 485-631 (651)
218 TIGR00221 nagA N-acetylglucosa 28.8 1.7E+02 0.0037 30.2 7.0 49 196-244 177-226 (380)
219 cd02911 arch_FMN Archeal FMN-b 28.7 5.1E+02 0.011 24.7 9.9 89 138-241 129-222 (233)
220 PTZ00450 macrophage migration 28.4 2.3E+02 0.005 24.2 6.7 42 151-194 60-102 (113)
221 PRK08673 3-deoxy-7-phosphohept 28.2 4.1E+02 0.009 27.2 9.5 126 149-281 91-228 (335)
222 PRK08883 ribulose-phosphate 3- 28.0 2.1E+02 0.0045 27.3 7.0 126 170-313 69-200 (220)
223 TIGR00970 leuA_yeast 2-isoprop 27.9 5.2E+02 0.011 28.3 10.8 80 154-235 171-267 (564)
224 PRK11359 cyclic-di-GMP phospho 27.6 8.4E+02 0.018 26.7 12.8 134 151-305 631-773 (799)
225 PRK13111 trpA tryptophan synth 27.5 5.9E+02 0.013 24.9 12.0 136 157-317 99-237 (258)
226 PRK09016 quinolinate phosphori 27.4 42 0.00091 33.8 2.2 95 186-309 180-281 (296)
227 PRK07807 inosine 5-monophospha 27.3 2.2E+02 0.0049 30.5 7.7 126 167-312 228-363 (479)
228 PRK08649 inosine 5-monophospha 27.2 1.1E+02 0.0024 31.7 5.2 89 200-307 122-214 (368)
229 PF01187 MIF: Macrophage migra 27.0 2.1E+02 0.0046 24.1 6.2 30 163-192 68-98 (114)
230 TIGR01502 B_methylAsp_ase meth 27.0 7.6E+02 0.016 26.0 11.8 105 152-283 229-351 (408)
231 PRK06559 nicotinate-nucleotide 27.0 44 0.00096 33.5 2.3 95 186-309 168-270 (290)
232 PF13361 UvrD_C: UvrD-like hel 26.9 2.4E+02 0.0051 27.0 7.3 54 166-220 59-112 (351)
233 PRK09776 putative diguanylate 26.6 8E+02 0.017 28.1 12.5 137 148-307 924-1071(1092)
234 cd00308 enolase_like Enolase-s 26.3 5.4E+02 0.012 24.0 11.9 115 139-283 82-199 (229)
235 TIGR00034 aroFGH phospho-2-deh 26.2 2.2E+02 0.0047 29.4 7.1 76 142-221 39-143 (344)
236 PRK12999 pyruvate carboxylase; 26.1 3.4E+02 0.0075 32.4 9.6 88 148-241 670-770 (1146)
237 cd04736 MDH_FMN Mandelate dehy 25.7 2.5E+02 0.0054 29.1 7.5 106 194-320 223-330 (361)
238 PRK09875 putative hydrolase; P 25.6 6.8E+02 0.015 25.0 12.2 103 132-240 97-213 (292)
239 PLN02274 inosine-5'-monophosph 25.5 3.7E+02 0.0079 29.0 9.0 126 168-312 250-384 (505)
240 PRK02615 thiamine-phosphate py 25.4 7.3E+02 0.016 25.5 10.8 129 162-312 181-326 (347)
241 cd03174 DRE_TIM_metallolyase D 25.4 2.2E+02 0.0049 26.8 6.8 40 196-235 115-164 (265)
242 KOG2335 tRNA-dihydrouridine sy 25.1 6.1E+02 0.013 26.4 10.0 85 138-231 130-227 (358)
243 PRK00208 thiG thiazole synthas 25.0 5.5E+02 0.012 25.4 9.3 38 195-234 163-201 (250)
244 cd04728 ThiG Thiazole synthase 24.7 5.1E+02 0.011 25.6 9.0 38 195-234 163-201 (248)
245 PLN02826 dihydroorotate dehydr 24.5 3.1E+02 0.0068 28.8 8.1 45 198-242 327-375 (409)
246 COG0635 HemN Coproporphyrinoge 24.5 3.1E+02 0.0067 28.7 8.1 150 120-282 93-267 (416)
247 PF02568 ThiI: Thiamine biosyn 24.5 90 0.0019 29.5 3.7 59 146-208 134-194 (197)
248 PRK14847 hypothetical protein; 24.4 6.4E+02 0.014 25.9 10.1 149 135-304 154-321 (333)
249 PRK09282 pyruvate carboxylase 24.4 6E+02 0.013 28.0 10.5 61 175-235 102-172 (592)
250 PF09505 Dimeth_Pyl: Dimethyla 24.3 2.6E+02 0.0056 29.0 7.0 130 83-240 157-289 (466)
251 cd04864 LigD_Pol_like_1 LigD_P 23.9 4.1E+02 0.009 25.8 8.2 34 149-183 100-133 (228)
252 PF06230 DUF1009: Protein of u 23.9 2.9E+02 0.0063 26.6 7.1 66 162-233 132-212 (214)
253 cd02932 OYE_YqiM_FMN Old yello 23.8 5.2E+02 0.011 25.8 9.3 93 137-235 207-318 (336)
254 cd04866 LigD_Pol_like_3 LigD_P 23.7 4.3E+02 0.0092 25.7 8.2 36 148-183 92-127 (223)
255 cd07942 DRE_TIM_LeuA Mycobacte 23.7 5.8E+02 0.012 25.4 9.5 109 159-282 17-135 (284)
256 TIGR03151 enACPred_II putative 23.6 1.1E+02 0.0023 30.7 4.3 82 197-307 52-135 (307)
257 PRK06267 hypothetical protein; 23.6 4E+02 0.0087 27.0 8.5 98 197-306 154-263 (350)
258 PRK06978 nicotinate-nucleotide 23.4 58 0.0012 32.8 2.3 93 186-308 177-277 (294)
259 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.0 4.3E+02 0.0093 25.8 8.3 43 266-308 117-169 (275)
260 TIGR01235 pyruv_carbox pyruvat 22.8 6.7E+02 0.015 30.1 11.1 90 146-241 666-768 (1143)
261 PRK07534 methionine synthase I 22.8 8.1E+02 0.018 24.9 12.8 86 131-218 84-179 (336)
262 COG3958 Transketolase, C-termi 22.6 77 0.0017 32.1 3.0 34 194-227 203-240 (312)
263 cd02801 DUS_like_FMN Dihydrour 22.6 6.1E+02 0.013 23.3 9.9 90 137-236 111-212 (231)
264 PRK06543 nicotinate-nucleotide 22.5 63 0.0014 32.3 2.4 95 186-309 160-266 (281)
265 TIGR01211 ELP3 histone acetylt 22.4 1.9E+02 0.0041 31.4 6.1 86 151-247 194-311 (522)
266 PTZ00397 macrophage migration 22.3 2.1E+02 0.0045 24.0 5.3 32 162-193 69-101 (116)
267 PLN02925 4-hydroxy-3-methylbut 22.3 1.5E+02 0.0033 33.4 5.4 58 149-208 232-291 (733)
268 TIGR00973 leuA_bact 2-isopropy 22.2 4.5E+02 0.0097 28.2 8.9 136 160-310 18-168 (494)
269 PRK06106 nicotinate-nucleotide 22.1 1.5E+02 0.0032 29.7 4.8 65 217-309 201-267 (281)
270 PRK06843 inosine 5-monophospha 22.0 2.3E+02 0.005 29.8 6.5 137 151-311 143-288 (404)
271 TIGR02814 pfaD_fam PfaD family 21.7 3.2E+02 0.007 29.1 7.5 99 186-307 136-252 (444)
272 cd00429 RPE Ribulose-5-phospha 21.6 4.2E+02 0.0092 23.8 7.6 112 188-312 84-198 (211)
273 CHL00073 chlN photochlorophyll 21.6 1.5E+02 0.0032 31.7 5.1 53 198-250 207-261 (457)
274 TIGR01496 DHPS dihydropteroate 21.5 4.1E+02 0.0088 25.9 7.8 53 164-216 143-203 (257)
275 cd04862 PaeLigD_Pol_like PaeLi 21.5 5E+02 0.011 25.2 8.2 35 149-183 98-132 (227)
276 PRK11059 regulatory protein Cs 21.5 1.1E+03 0.023 25.7 12.4 135 149-307 483-630 (640)
277 PRK13523 NADPH dehydrogenase N 21.4 4.3E+02 0.0093 26.8 8.2 99 135-235 193-303 (337)
278 PRK09533 bifunctional transald 21.2 32 0.0007 39.9 0.1 48 59-113 2-55 (948)
279 TIGR01305 GMP_reduct_1 guanosi 21.2 9.3E+02 0.02 24.9 12.0 133 149-308 95-241 (343)
280 PRK09140 2-dehydro-3-deoxy-6-p 21.1 2.6E+02 0.0056 26.3 6.2 67 162-236 19-90 (206)
281 COG0157 NadC Nicotinate-nucleo 21.1 82 0.0018 31.6 2.8 96 186-308 159-262 (280)
282 TIGR02660 nifV_homocitr homoci 20.7 2.8E+02 0.006 28.3 6.7 72 162-241 139-221 (365)
283 PRK11170 nagA N-acetylglucosam 20.6 2.9E+02 0.0062 28.5 6.8 57 189-245 168-225 (382)
284 PF11823 DUF3343: Protein of u 20.6 1.6E+02 0.0034 22.9 3.8 36 186-223 2-37 (73)
285 PRK00278 trpC indole-3-glycero 20.6 4.2E+02 0.0091 25.8 7.7 68 216-309 119-188 (260)
286 TIGR02320 PEP_mutase phosphoen 20.6 8.5E+02 0.018 24.2 10.6 95 137-237 66-189 (285)
287 TIGR01163 rpe ribulose-phospha 20.5 2.1E+02 0.0046 25.9 5.4 75 160-236 6-85 (210)
288 TIGR01928 menC_lowGC/arch o-su 20.4 8.5E+02 0.018 24.2 12.5 109 143-283 166-277 (324)
289 cd03313 enolase Enolase: Enola 20.1 9.9E+02 0.021 24.8 13.1 106 149-283 230-359 (408)
290 PRK12756 phospho-2-dehydro-3-d 20.1 3.5E+02 0.0076 28.0 7.1 39 142-180 43-81 (348)
No 1
>KOG2772 consensus Transaldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-87 Score=640.39 Aligned_cols=323 Identities=36% Similarity=0.567 Sum_probs=295.3
Q ss_pred cCHHHHhhcc-cceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhh
Q 016178 58 STELDAVSSF-SEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKA 136 (394)
Q Consensus 58 ~~~Ld~L~~~-t~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~ 136 (394)
-+.|++|+.. |++++|||||..|.+|+|+|+|||||+|+.+.+.|. |.+.++.++.||+..+. ....++..++++.
T Consensus 13 ~ssL~qLk~~~t~vvadtgDf~~i~~~~p~daTtnpSlil~as~~~~--y~~~~~~aveygk~~~~-~~~e~v~~aidr~ 89 (337)
T KOG2772|consen 13 RSSLEQLKASGTVVVADTGDFLAIIEYKPQDATTNPSLILAASKMPA--YAELFDTAVEYGKKHGS-SYWEQVENAIDRA 89 (337)
T ss_pred HhhHHHHHhccCeeecCccchHHHHhcCCCCCccCHHHHHhhhccHh--HHHHHHHHHHHHHHhcc-chHHHHHHHHHHH
Confidence 3779999998 889999999999999999999999999999999998 99999999999987653 4556778899999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEec
Q 016178 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTF 216 (394)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~Tl 216 (394)
+++||.+|++++|||||+||||||++|+++||++|+.|+++|++.||+++||+||||+||+||+|+|+|+.+||+||+||
T Consensus 90 ~v~fg~dilk~vpGrVStEVdaRLsfDTq~tvekA~~Likly~~~gv~k~rvliKI~sTwegI~Aar~le~~GIhcnmTl 169 (337)
T KOG2772|consen 90 CVLFGTDILKGVPGRVSTEVDARLSFDTQGTVEKARHLIKLYNEEGVPKERVLIKIASTWEGIQAARELEEEGIHCNMTL 169 (337)
T ss_pred HHHhChhhhhcCCCeeeeeecccccccchhHHHHHHHHHHHHHhcCCChheEEEecccccchhHHHHHHHhcCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhh
Q 016178 217 VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL 296 (394)
Q Consensus 217 VFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i 296 (394)
+||+.||++|++||+++||||||||+||++++.+++ .+..++||||.++++||+||++|||+|+||+|||||.+++
T Consensus 170 lFSfaQAVacAea~vtliSpFVgRi~dw~~~~t~~k----a~~~~~dpgV~sv~~iYnyykKfgykt~Vm~asfrn~~ei 245 (337)
T KOG2772|consen 170 LFSFAQAVACAEAGVTLISPFVGRILDWYKANTGQK----AYKAREDPGVASVKKIYNYYKKFGYKTLVMAASFRNTGEI 245 (337)
T ss_pred hHHHHHHHHHHhcCCeeehhHHHHHHHHHHhccCch----hccccCCchHHHHHHHHHHHHHhhHHHHHHHHHhhchhhh
Confidence 999999999999999999999999999999998753 5666779999999999999999999999999999999999
Q ss_pred HhhhCCCeecccHHHHHHHHhCCCCC-cchhhhhccCChhhhccCCCChHHhhhhhHHHHHHhhchHHHHHHHHHHHHHH
Q 016178 297 FSLLGVDYIIAPLKVLQSLKESAISP-DEKYSFVRRLSPQSAAMYNFTEEELTKWDQLSLASAMGPASVELLAAGLDGYV 375 (394)
Q Consensus 297 ~~laG~D~lTip~~vl~~L~~~~~~~-~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~ekL~eGI~~F~ 375 (394)
..++|||++|+||.+|++|.++...+ .+..++.+++.+... ..+++++.++| ..+.++|++|||+||||+|+
T Consensus 246 k~lag~D~ltisp~ll~~l~~s~~~~~~~l~a~~ak~~~~~k--~~y~de~~fr~-----~lned~ma~eklseGI~~Fa 318 (337)
T KOG2772|consen 246 KNLAGVDYLTISPALLPQLVNSTEDQPLELSASHAKLKDLEK--VSYSDEEGFRW-----DLNEDAMATEKLSEGIRKFA 318 (337)
T ss_pred hhcccCceeeecHHHHHHHhhCCCccchhhhhhhhhccCccc--ccccchhhhHh-----hhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999876653 445555555554321 23355666777 67888999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 016178 376 NQARRVEDLFEKMWPPPNV 394 (394)
Q Consensus 376 ~~~~kLe~~~~~~~~~~~~ 394 (394)
+|+++||++|++.|||||+
T Consensus 319 ~d~~~L~~ll~~k~~~~~~ 337 (337)
T KOG2772|consen 319 KDAETLEKLLEKKANTLKL 337 (337)
T ss_pred HHHHHHHHHHHHhccccCC
Confidence 9999999999999999986
No 2
>PTZ00411 transaldolase-like protein; Provisional
Probab=100.00 E-value=5e-84 Score=640.86 Aligned_cols=314 Identities=34% Similarity=0.599 Sum_probs=283.4
Q ss_pred ccCHHHHhhcccceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcc---------cChhh
Q 016178 57 LSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCEL---------ENSEL 127 (394)
Q Consensus 57 ~~~~Ld~L~~~t~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l---------~~~~~ 127 (394)
|+|+||+||++|+||+||||++.|++|.|+|+|||||||+++.++|+ |+++|++++.|+++... .++..
T Consensus 1 m~~~L~~L~~~t~vv~Dt~d~~~i~~~~p~daTtNPslil~a~~~~~--y~~li~~a~~~~~~~~~~~~~~l~~~~~~~~ 78 (333)
T PTZ00411 1 MPNQLEALKEHTTVVADTGDFSLLKKFQPEDATTNPSLVLAAAQMPE--YAHLIDDAIKYAKANVSRLRDPLLSDEEKEE 78 (333)
T ss_pred CCCHHHHhhCCeEEecCCCCHHHHHhcCCCCCCCCHHHHHHHhcChH--HHHHHHHHHHHHhhccccccchhccccChhH
Confidence 67999999999999999999999999999999999999999999998 99999999999876531 14456
Q ss_pred hhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHH
Q 016178 128 RLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLES 207 (394)
Q Consensus 128 ~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~ 207 (394)
+..+++|+..+++|.++++.++|+||+||||++++|+++||++|++|+++|++.||+++||+||||+||+||+|+++|++
T Consensus 79 ~~~~a~d~l~v~~g~~i~~~i~G~VS~EVd~~ls~d~e~~i~~A~~l~~l~~~~gi~~~rilIKIPaT~eGi~Aa~~L~~ 158 (333)
T PTZ00411 79 LVELVVDKLTVNFGVEILKIVPGRVSTEVDARLSFDKQAMVDKARKIIKMYEEAGISKDRILIKLASTWEGIQAAKALEK 158 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEccccccCHHHHHHHHHHHHHhhhhhcCCCCcEEEEeCCCHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHH
Q 016178 208 EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA 287 (394)
Q Consensus 208 eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLa 287 (394)
+||+||+|+|||+.||.+|++||+.|||||||||+||+++..... .+....+||+.++++||+||++||++|+||+
T Consensus 159 eGI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~----~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ 234 (333)
T PTZ00411 159 EGIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAE----SYVGAQDPGVISVTKIYNYYKKHGYKTIVMG 234 (333)
T ss_pred CCCceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccc----cccccCCchHHHHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999999999999999999999996543311 2223347999999999999999999999999
Q ss_pred hhcCChhhhHhhhCCCeecccHHHHHHHHhCC-CCCcchhhhhccCChhhhccC-----CCChHHhhhhhHHHHHHhhch
Q 016178 288 AAVRNKQDLFSLLGVDYIIAPLKVLQSLKESA-ISPDEKYSFVRRLSPQSAAMY-----NFTEEELTKWDQLSLASAMGP 361 (394)
Q Consensus 288 AS~R~~~~i~~laG~D~lTip~~vl~~L~~~~-~~~~~~~a~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~ 361 (394)
|||||++|+.+++|||++|+||++|++|..++ .+ +.++|++..+... .+++.+ ++| .+|+|+
T Consensus 235 ASfRn~~qi~~laG~D~lTi~p~ll~~L~~~~~~~------~~~~l~~~~~~~~~~~~~~~~e~~-fr~-----~~~~d~ 302 (333)
T PTZ00411 235 ASFRNTGEILELAGCDKLTISPKLLEELANTEDGP------VERKLDPEKLTEDTEKLPELTEKE-FRW-----ELNEDA 302 (333)
T ss_pred cccCCHHHHHHHHCCCEEeCCHHHHHHHHhCCCcc------cCcccCcccccccccccCCCCHHH-HHH-----HhCCCc
Confidence 99999999999999999999999999999998 54 5788877544332 224444 345 678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016178 362 ASVELLAAGLDGYVNQARRVEDLFEKM 388 (394)
Q Consensus 362 ~a~ekL~eGI~~F~~~~~kLe~~~~~~ 388 (394)
|++|||+||||+|++|+++||++|++.
T Consensus 303 ma~ekl~~gir~F~~d~~~Le~~i~~~ 329 (333)
T PTZ00411 303 MATEKLAEGIRNFAKDLEKLENVIRAK 329 (333)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999864
No 3
>PRK12346 transaldolase A; Provisional
Probab=100.00 E-value=1e-83 Score=634.30 Aligned_cols=311 Identities=34% Similarity=0.565 Sum_probs=285.1
Q ss_pred CHHHHhhcccceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHH
Q 016178 59 TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALV 138 (394)
Q Consensus 59 ~~Ld~L~~~t~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v 138 (394)
|+||+||++|+||+||||++.|++|+|+|+|||||+|+++.++|. |+++|++++.++++.+. +.+..+.+++|+..+
T Consensus 2 ~~L~~Lk~~t~vv~Dtgd~~~i~~~~p~daTtNPsli~~a~~~~~--y~~li~~ai~~~~~~~~-~~~~~i~~a~D~l~v 78 (316)
T PRK12346 2 NQLDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGLPQ--YQHLIDDAIAWGKKQGG-TQEQQVVAACDKLAV 78 (316)
T ss_pred ChHHHhhCCeEEecCCCCHHHHHhcCCCccccCHHHHHHHhcChh--hHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999998 99999999999887653 555667788999999
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEeccc
Q 016178 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVY 218 (394)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVF 218 (394)
.+|.+++++++|+||+|||||+++|+++||++|++|+++|++.||+++|++||||+||+||+|+++|+++||+||+|+||
T Consensus 79 ~~g~ei~~~v~G~Vs~EVdp~la~d~e~~i~~A~~l~~l~~~~gi~~~~i~IKIPaT~eGi~A~~~L~~~GI~~n~TliF 158 (316)
T PRK12346 79 NFGAEILKSVPGRVSTEVDARLSFDREKSIEKARHLVDLYQQQGIDKSRILIKLASTWEGIRAAEELEKEGINCNLTLLF 158 (316)
T ss_pred HHHHHHhcCCCCcEEEEEccccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHHHHHHHCCCceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh
Q 016178 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (394)
Q Consensus 219 S~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~ 298 (394)
|+.||.+|++||++|||||||||+||++++.+.. .+....+||+.++++||+||++||++|+||+|||||++|+++
T Consensus 159 S~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~----~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~~qi~a 234 (316)
T PRK12346 159 SFAQARACAEAGVFLISPFVGRIYDWYQARKPMD----PYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQILA 234 (316)
T ss_pred CHHHHHHHHHcCCCEEEecccHHHHhhhhccccc----cccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHH
Confidence 9999999999999999999999999998865432 222334799999999999999999999999999999999999
Q ss_pred hhCCCeecccHHHHHHHHhCCCCCcchhhhhccCChhhhccC---CCChHHhhhhhHHHHHHhhchHHHHHHHHHHHHHH
Q 016178 299 LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMY---NFTEEELTKWDQLSLASAMGPASVELLAAGLDGYV 375 (394)
Q Consensus 299 laG~D~lTip~~vl~~L~~~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~a~ekL~eGI~~F~ 375 (394)
++|||++|+||+++++|..+..+ +.++|+|..+... .++|++| +| .+|.|+||+|||+||||+|+
T Consensus 235 laG~d~lTi~p~ll~~L~~~~~~------~~~~l~~~~~~~~~~~~~~e~~f-r~-----~~~~d~mA~ekl~eGIr~F~ 302 (316)
T PRK12346 235 LAGCDRLTISPNLLKELQESESP------VERKLIPSSQTFPRPAPMSEAEF-RW-----EHNQDAMAVEKLSEGIRLFA 302 (316)
T ss_pred HhCCCEEeCCHHHHHHHHhcCCC------cccccChhhhcccCCCCCCHHHH-HH-----HhCcCHhHHHHHHHHHHHHH
Confidence 99999999999999999998775 5788887654332 3466663 66 78999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 016178 376 NQARRVEDLFEKM 388 (394)
Q Consensus 376 ~~~~kLe~~~~~~ 388 (394)
+|+++||++|++.
T Consensus 303 ~d~~~Le~~i~~~ 315 (316)
T PRK12346 303 VDQRKLEDLLAAK 315 (316)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999864
No 4
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=100.00 E-value=2.2e-82 Score=625.49 Aligned_cols=311 Identities=36% Similarity=0.594 Sum_probs=283.1
Q ss_pred CHHHHhhcccceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHH
Q 016178 59 TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALV 138 (394)
Q Consensus 59 ~~Ld~L~~~t~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v 138 (394)
|+||+||++|+||+||||++.|++|+|+|+|||||+++++.++|. |+++|+.++.++++.+. .......+++|+..+
T Consensus 1 ~~L~~L~~~t~vv~Dtgd~~~I~~~~p~~aTtNPsi~~~A~~~~~--Y~~~i~~~~~~~~~~~~-~~~~~i~~a~D~l~v 77 (317)
T TIGR00874 1 NQLDQLKQFTVVVADTGDIEAIKKYQPQDATTNPSLILAAAQLPK--YAELIDEAVAWGKKQGK-DDAQQVENALDKLAV 77 (317)
T ss_pred ChHHHhhcCeEEEeCCCCHHHHHhCCCCccccCHHHHHHHhCChH--HHHHHHHHHHHhhhcCC-ChHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999998 99999999998876643 344567778999999
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEeccc
Q 016178 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVY 218 (394)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVF 218 (394)
.+|+++++.++|+||+|||||+++|+++||++|++|+++|++.||+++||+||||+||+||+|+++|+++||+||+||||
T Consensus 78 ~~g~~i~~~i~G~VS~EVdprls~d~~~~i~~A~~l~~l~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~GI~vN~TliF 157 (317)
T TIGR00874 78 NFGLEILKIVPGRVSTEVDARLSFDTEATVEKARHLIKLYEDAGVDKKRILIKIASTWEGIRAAEELEKEGIHCNLTLLF 157 (317)
T ss_pred HHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHHHHHHHCCCceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh
Q 016178 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (394)
Q Consensus 219 S~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~ 298 (394)
|++||++|++||+.|||||||||+||++++.+.. .+....+||+.++++||+||++||++|+||+|||||++|+++
T Consensus 158 S~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~----~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~ 233 (317)
T TIGR00874 158 SFVQAIACAEAKVTLISPFVGRILDWYKAATGKK----EYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILA 233 (317)
T ss_pred CHHHHHHHHHcCCCEEEeecchHhHhhhhccCcc----ccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHH
Confidence 9999999999999999999999999998865421 122334799999999999999999999999999999999999
Q ss_pred hhCCCeecccHHHHHHHHhCCCCCcchhhhhccCChhhhcc-----CCCChHHhhhhhHHHHHHhhchHHHHHHHHHHHH
Q 016178 299 LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAM-----YNFTEEELTKWDQLSLASAMGPASVELLAAGLDG 373 (394)
Q Consensus 299 laG~D~lTip~~vl~~L~~~~~~~~~~~a~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~a~ekL~eGI~~ 373 (394)
++|||++|+||+++++|..++.+ +.++|++..+.. ..+++.+ |+| .+|.|+|++|||+||||+
T Consensus 234 laG~d~~Ti~p~ll~~L~~~~~~------~~~~l~~~~~~~~~~~~~~~~e~~-fr~-----~~~~d~ma~ekl~~gir~ 301 (317)
T TIGR00874 234 LAGCDRLTISPALLDELKESTGP------VERKLDPESAKKVDKQPIILDESE-FRF-----LHNEDAMATEKLAEGIRK 301 (317)
T ss_pred HHCCCeEeCCHHHHHHHHhCCCC------cCccCCccccccccccCCCCCHHH-HHH-----HhCCCcchHHHHHHHHHH
Confidence 99999999999999999998876 468888765433 2345666 456 889999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 016178 374 YVNQARRVEDLFEKM 388 (394)
Q Consensus 374 F~~~~~kLe~~~~~~ 388 (394)
|++|+++||++|++.
T Consensus 302 F~~d~~~Le~~i~~~ 316 (317)
T TIGR00874 302 FAADQEKLEKLLEEK 316 (317)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999864
No 5
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=100.00 E-value=2.9e-81 Score=617.38 Aligned_cols=308 Identities=41% Similarity=0.693 Sum_probs=280.5
Q ss_pred CHHHHhhcccceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHH
Q 016178 59 TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALV 138 (394)
Q Consensus 59 ~~Ld~L~~~t~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v 138 (394)
|+||+||++|+||+||||++.|++|.|+|+|||||+++++.++|. |+++|+.++.++++.+. ..+....+..|+..+
T Consensus 1 ~~L~~L~~~t~vv~Dtgdl~~I~~~~p~gaTtNPsli~ka~~~~~--y~~~i~~~~~~~~~~~~-~~~~~~~~~~d~l~v 77 (313)
T cd00957 1 NQLDQLKKFTTIVADTGDFEAIKKFKPQDATTNPSLILAAAKLPE--YNKLVDEAIAYAKKKGG-SDEDQISNALDKLLV 77 (313)
T ss_pred ChHHHhhcCcEEEecCCCHHHHHhcCCCeeeeCHHHHHHHhcCHH--HHHHHHHHHHHhhhcCC-CHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999997 99999999999887653 666778889999999
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEeccc
Q 016178 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVY 218 (394)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVF 218 (394)
++|+++++.++|+||+|||||+++|+++||++|++|+++|++.||+++||+||||+||+||+||++|+++||+||+|+||
T Consensus 78 ~~~~~i~~~i~G~Vs~EVdp~la~d~~~~i~~A~~l~~~~~~~gi~~~~i~IKIPaT~eGi~A~~~L~~~GI~vn~TlvF 157 (313)
T cd00957 78 NFGTEILKLIPGRVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILIKIAATWEGIQAAKQLEKEGIHCNLTLLF 157 (313)
T ss_pred HHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHHHHHHHCCCceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh
Q 016178 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (394)
Q Consensus 219 S~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~ 298 (394)
|++||++|++||++|||||||||+||++++.+.. .+....|||+.++++||+||++||++|+||+|||||++|+++
T Consensus 158 S~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~----~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~~~v~~ 233 (313)
T cd00957 158 SFAQAVACAEAGVTLISPFVGRILDWYKKHSGDK----AYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILA 233 (313)
T ss_pred CHHHHHHHHHcCCCEEEeecchHHHhhhhccccc----cCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHH
Confidence 9999999999999999999999999998765422 223345799999999999999999999999999999999999
Q ss_pred hhCCCeecccHHHHHHHHhCCCCCcchhhhhccCChhhhcc-----CCCChHHhhhhhHHHHHHhhchHHHHHHHHHHHH
Q 016178 299 LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAM-----YNFTEEELTKWDQLSLASAMGPASVELLAAGLDG 373 (394)
Q Consensus 299 laG~D~lTip~~vl~~L~~~~~~~~~~~a~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~a~ekL~eGI~~ 373 (394)
++|||++|+||+++++|..++.+ +.++|++..+.. ..++|++ ++| .++.|+|++|||+||||+
T Consensus 234 laG~d~~Ti~p~ll~~L~~~~~~------~~~~l~~~~~~~~~~~~~~~~e~~-fr~-----~~~~d~ma~ekl~~gir~ 301 (313)
T cd00957 234 LAGCDYLTISPALLEELKNSTAK------VERKLDPAASKALDIHPNFLDESA-FRW-----ALNEDAMAVEKLSEGIRG 301 (313)
T ss_pred HhCCCeEEcCHHHHHHHHhCCCc------cccccCcccccccccccccCCHHH-HHH-----HhCcccchHHHHHHHHHH
Confidence 99999999999999999999876 357776543211 2235555 466 778899999999999999
Q ss_pred HHHHHHHHHHHH
Q 016178 374 YVNQARRVEDLF 385 (394)
Q Consensus 374 F~~~~~kLe~~~ 385 (394)
|++|+++||++|
T Consensus 302 F~~d~~~L~~~~ 313 (313)
T cd00957 302 FAKDAVKLEKLI 313 (313)
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
No 6
>PRK05269 transaldolase B; Provisional
Probab=100.00 E-value=2e-80 Score=613.17 Aligned_cols=313 Identities=35% Similarity=0.598 Sum_probs=280.5
Q ss_pred ccCHHHHhhcccceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhh
Q 016178 57 LSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKA 136 (394)
Q Consensus 57 ~~~~Ld~L~~~t~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~ 136 (394)
|.|+||+|+++|+||+||||++.|++|.|+|+||||||++++.++|. |+++|+.++.++++.+ ......+.+++|+.
T Consensus 1 ~~~~L~~L~~~t~vv~Dtgdl~~i~~~~p~g~TtNPsli~ka~~~~~--Y~~~i~~~~~~~~~~~-~~~~~~i~~a~d~l 77 (318)
T PRK05269 1 MTNKLEQLKQFTTVVADTGDIEAIKKYQPQDATTNPSLILKAAQIPE--YAPLIDDAVAWAKQQS-GDRAQQIDDAIDKL 77 (318)
T ss_pred CCCHHHHHHhCCEEEcCCCCHHHHHhcCCCceeeCHHHHHHHhcCHh--HHHHHHHHHHhhcccc-cchHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999997 9999999999877653 35556678889999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEec
Q 016178 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTF 216 (394)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~Tl 216 (394)
.++||.+++++++|+||+||||++++|+++||++|++|+++|++.||+++||+||||+||+||+|+++|+++||+||+|+
T Consensus 78 ~v~~g~ei~~~i~G~Vs~EVdp~l~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~GI~vn~Tl 157 (318)
T PRK05269 78 AVNFGLEILKLIPGRVSTEVDARLSFDTEATIAKARKLIALYEEAGISKDRILIKIASTWEGIRAAEQLEKEGINCNLTL 157 (318)
T ss_pred HHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHHHHHHHcCCceeEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhh
Q 016178 217 VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL 296 (394)
Q Consensus 217 VFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i 296 (394)
|||+.||.+|++||++|||||||||+||++++.+.. .+....+||+.++++||+||+++|++|+||+|||||++|+
T Consensus 158 vFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~----~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v 233 (318)
T PRK05269 158 LFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKK----EYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQI 233 (318)
T ss_pred ecCHHHHHHHHHcCCCEEEeeccHHHHHhhhccccc----ccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHH
Confidence 999999999999999999999999999998765422 1222247999999999999999999999999999999999
Q ss_pred HhhhCCCeecccHHHHHHHHhCCCCCcchhhhhccCChhhhccC---CCChHHhhhhhHHHHHHhhchHHHHHHHHHHHH
Q 016178 297 FSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMY---NFTEEELTKWDQLSLASAMGPASVELLAAGLDG 373 (394)
Q Consensus 297 ~~laG~D~lTip~~vl~~L~~~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~a~ekL~eGI~~ 373 (394)
.+++|||++|+||.++++|..+..+ +.++|++..+... .+++.+ ++| .+++|+|++|||+||||+
T Consensus 234 ~~laG~d~vTi~p~ll~~l~~~~~~------~~~~l~~~~~~~~~~~~~~e~~-f~~-----~~~~d~ma~ekl~egi~~ 301 (318)
T PRK05269 234 LELAGCDRLTISPALLEELAASEGE------LERKLSPPGEAKARPVPLTEAE-FRW-----QHNEDAMATEKLAEGIRK 301 (318)
T ss_pred HHHhCCCeEECCHHHHHHHHhcCCC------ccccCCCccccccccccCCHHH-HHH-----HhCcccchHHHHHHHHHH
Confidence 9999999999999999999987665 3677775322211 223333 233 578899999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 016178 374 YVNQARRVEDLFEKM 388 (394)
Q Consensus 374 F~~~~~kLe~~~~~~ 388 (394)
|++|+++||++|++.
T Consensus 302 F~~~~~~L~~~i~~~ 316 (318)
T PRK05269 302 FAKDQEKLEKLIAAK 316 (318)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999864
No 7
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=100.00 E-value=2.5e-80 Score=627.21 Aligned_cols=314 Identities=33% Similarity=0.576 Sum_probs=282.5
Q ss_pred ccCHHHHhhcccceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcc--cChhhhhhhhhh
Q 016178 57 LSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCEL--ENSELRLSCFFN 134 (394)
Q Consensus 57 ~~~~Ld~L~~~t~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l--~~~~~~~~~~~~ 134 (394)
|.|+||+||++|+||+||||++.|++|+|+|+|||||+|+++.++|. |+++|+.++.++++... ...+....++++
T Consensus 2 ~~~~L~~L~~~t~vv~Dtgd~~~i~~~~p~~aTtNPsli~~a~~~~~--y~~~i~~~~~~~~~~~~~~~~~~~~~~~a~d 79 (391)
T PRK12309 2 MASLLEQLRQMTVVVADTGDIQAIEKFTPRDATTNPSLITAAAQMPQ--YQSIVDETLRQARKELGSDAPVEDVVALAFD 79 (391)
T ss_pred ccCHHHHHHcCcEEecCCCCHHHHHhcCCCccccCHHHHHHHhCCHH--HHHHHHHHHHHhhhccccCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998 99999999998876421 134556778899
Q ss_pred hhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeE
Q 016178 135 KALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHL 214 (394)
Q Consensus 135 ~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~ 214 (394)
+..+++|+++++.++|+||+|||||+++|+++||++|++|+++|++.||+++||+||||+||+||+|+++|+++||+||+
T Consensus 80 ~l~v~~g~~i~~~i~G~Vs~EVdprl~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~GI~~n~ 159 (391)
T PRK12309 80 RLAVAFGLKILKIVPGRVSTEVDARLSYDTEATIAKARKLISLYEDAGISRDRVLIKIASTWEGIKAAEVLEKEGIHCNL 159 (391)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCCCHHHHHHHHHHHHCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChh
Q 016178 215 TFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQ 294 (394)
Q Consensus 215 TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~ 294 (394)
|+|||+.||++|++||++|||||||||+||++++.+.. .++...|||+.++++||+||++||++|+||+|||||++
T Consensus 160 TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~----~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~ 235 (391)
T PRK12309 160 TLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRD----SYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIG 235 (391)
T ss_pred eeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCC----ccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHH
Confidence 99999999999999999999999999999998866532 23334689999999999999999999999999999999
Q ss_pred hhHhhhCCCeecccHHHHHHHHhCCCCCcchhhhhccCChhhhccC-----CCChHHhhhhhHHHHHHhhchHHHHHHHH
Q 016178 295 DLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMY-----NFTEEELTKWDQLSLASAMGPASVELLAA 369 (394)
Q Consensus 295 ~i~~laG~D~lTip~~vl~~L~~~~~~~~~~~a~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~a~ekL~e 369 (394)
|+++++|||++|+||+++++|..++.+ +.+.++|..+... .++|.+ ++| .+|.|+||+|||+|
T Consensus 236 ~v~~laG~d~~Ti~p~ll~~L~~~~~~------~~~~l~~~~~~~~~~~~~~~~e~~-f~~-----~~~~~~ma~ekl~e 303 (391)
T PRK12309 236 EIIELAGCDLLTISPKLLEQLRSTEAE------LPRKLDPANAAGMEIEKIHMDRAT-FDK-----MHAEDRMASEKLDE 303 (391)
T ss_pred HHHHHHCCCeeeCCHHHHHHHHhcCCC------cCcccChhhccccccccCCCCHHH-HHH-----HhccCchHHHHHHH
Confidence 999999999999999999999997765 5678877554332 223443 234 56789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 016178 370 GLDGYVNQARRVEDLFEKM 388 (394)
Q Consensus 370 GI~~F~~~~~kLe~~~~~~ 388 (394)
|||+|++|+++||++|++.
T Consensus 304 gi~~F~~d~~~L~~~i~~~ 322 (391)
T PRK12309 304 GIKGFSKALETLEKLLAHR 322 (391)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864
No 8
>PRK03343 transaldolase; Validated
Probab=100.00 E-value=3.9e-60 Score=474.94 Aligned_cols=304 Identities=22% Similarity=0.252 Sum_probs=252.1
Q ss_pred CccCHHHHhhcccceeccccchh-hhhccCCCCcccChhHHHHHh-cCChHHHHHHHHHHHHhhh-----hhcccChhhh
Q 016178 56 GLSTELDAVSSFSEIVPDTVVFD-DFERFPPTAATVSSSLLLGIC-SLPDTIFRNAVDMALADSS-----CCELENSELR 128 (394)
Q Consensus 56 ~~~~~Ld~L~~~t~ivaDt~d~~-~i~~~~p~daTTNpsli~~~~-~nP~ti~~~ai~~al~~~~-----~~~l~~~~~~ 128 (394)
|.+-|||.|.+ =+.++|||+ .|.++.|+|+||||+++.++. +.|. |++.|+..+.+++ ++.+...+++
T Consensus 12 g~s~WlD~i~R---~~l~~g~l~~lI~~~g~~GaTsNPsIf~~Ai~~~~~--Y~~~i~~l~~~~~~~~~~~~~La~~di~ 86 (368)
T PRK03343 12 GQSIWLDDLSR---DRLTSGNLARLIDEKGVVGVTSNPAIFQKAIAGGDA--YDAQIAELAAAGADVEEAYEELTTADVR 86 (368)
T ss_pred CcEEeecCCcc---ccccCcCHHHHHHhCCCCeeccCHHHHHHHHhCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 56677777776 677789998 678899999999999999998 5565 9999999886553 4445577889
Q ss_pred hhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc
Q 016178 129 LSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE 208 (394)
Q Consensus 129 ~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e 208 (394)
.+|+...+.+ +++++++|+||+||||++++|+++||++|++|+++ ++++||+||||+||+||+||++|+++
T Consensus 87 ~AaD~L~p~~----e~~~g~~G~VS~EVdp~la~d~e~~i~eA~~L~~~-----~~~~nv~IKIPaT~~Gi~Ai~~L~~~ 157 (368)
T PRK03343 87 NACDVLRPVY----EATGGVDGRVSIEVSPRLAHDTEATIAEARRLWAA-----VDRPNLMIKIPATPEGLPAIEALIAE 157 (368)
T ss_pred HHHHHHHHHH----HHhCCCCCeEEEEeccccccCHHHHHHHHHHHHHh-----cCCCCEEEEeCCCHHHHHHHHHHHHC
Confidence 9999999888 89999999999999999999999999999999998 78899999999999999999999999
Q ss_pred CceeeEecccCHHHHHHHHHc-----------CC------cEEEechhhhhhhhhcCCCCcccchhh-ccCCCchHHHHH
Q 016178 209 GIQTHLTFVYSFAQAAAAAQA-----------GA------SVIQIFVGRLRDWARNHSGDPEIDDAL-KRGEDPALSLVS 270 (394)
Q Consensus 209 GI~vN~TlVFS~~QA~aaa~A-----------Ga------~~ISpFVgRidd~~~~~~~d~~~~~~~-~~~~d~Gv~~v~ 270 (394)
||+||+|+|||+.||.+|++| |. +||||||||||.+.++.......+... ..| ++||++++
T Consensus 158 GI~vn~TliFS~~Qa~a~~eA~~~Gl~~~~~~G~~~~~~~sviS~FVsRiD~~~d~~l~~~~~~~~~~l~g-~~gVa~ak 236 (368)
T PRK03343 158 GISVNVTLIFSVERYRAVADAYLRGLEKRLAAGHDLSKIHSVASFFVSRVDTEVDKRLEAIGTDEALALRG-KAAIANAR 236 (368)
T ss_pred CCceeEeeecCHHHHHHHHHHHHHHHHHHHHcCCCcccCCeEEEeehhhhHhhhhhhhhhcCcchhhhhcC-CHHHHHHH
Confidence 999999999999999999998 75 899999999966665433221111111 133 79999999
Q ss_pred HHHHHHHHcC----C----------------chHHHHhhcCChhhhHhhhCCCee-cccHHHHHHHHhCCCCCcchhhhh
Q 016178 271 KAYNYIHKYG----H----------------KSKLMAAAVRNKQDLFSLLGVDYI-IAPLKVLQSLKESAISPDEKYSFV 329 (394)
Q Consensus 271 ~iy~~~~~~g----~----------------~t~vLaAS~R~~~~i~~laG~D~l-Tip~~vl~~L~~~~~~~~~~~a~~ 329 (394)
.+|++|++++ + .|.||++|+|++.+|.+|+|||.+ |+||.+|+++.+++.. .
T Consensus 237 ~~Y~~~~~~~~~~~~~~l~~~ga~~qr~LwAsT~vk~~~~~~~~yV~~L~G~dtvnT~p~~tl~a~~~~g~~-------~ 309 (368)
T PRK03343 237 LAYQAYEEVFASPRWAALAAAGARPQRPLWASTGTKNPAYSDTLYVDELVAPDTVNTMPEATLDAFADHGEV-------A 309 (368)
T ss_pred HHHHHHHHhcCcchhHHHHhcCCcccccceeccccCCCccCccccHHHccCCCccCCCCHHHHHHHHhcCCc-------c
Confidence 9999999976 4 666777778999999999999999 9999999999988764 3
Q ss_pred ccCChhhhccCCCChHHhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016178 330 RRLSPQSAAMYNFTEEELTKWDQLSLASAMGPASVELLAAGLDGYVNQARRVEDLFEK 387 (394)
Q Consensus 330 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~ekL~eGI~~F~~~~~kLe~~~~~ 387 (394)
+++++....... .-+++.+ +++|+|+|+++||+|||++|++++++|++.|++
T Consensus 310 ~~l~~~~~~a~~-~l~~l~~-----~gid~d~~~~~ll~eGi~~F~~~~~~Ll~~l~~ 361 (368)
T PRK03343 310 DTLTGDYEEAQA-VLAALAA-----LGIDLDDVTAVLEEEGVDKFEASWNELLASLEA 361 (368)
T ss_pred ccCCCchhhHHH-HHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566543211111 1112222 478999999999999999999999999999873
No 9
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-60 Score=449.01 Aligned_cols=232 Identities=33% Similarity=0.589 Sum_probs=208.0
Q ss_pred HHHhhcccceeccccchhhhhccCC----CCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhh
Q 016178 61 LDAVSSFSEIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKA 136 (394)
Q Consensus 61 Ld~L~~~t~ivaDt~d~~~i~~~~p----~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~ 136 (394)
+++|+++.+++.||+|+++|+++.| .|+||||||++++.++| ++
T Consensus 1 ~~~~~~~~~~~~Dt~d~~eikk~~~~g~v~GvTTNPSli~ka~~~~--------------------------------~~ 48 (239)
T COG0176 1 LDGLSQWMELFLDTADIEEIKKLLPIGPVDGVTTNPSLILKAGAKP--------------------------------RD 48 (239)
T ss_pred CchhhhhHhheecccCHHHHHHhhhcCCcCCcCCCHHHHHhhcccC--------------------------------cc
Confidence 4688999889999999999999999 99999999999998876 45
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEec
Q 016178 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTF 216 (394)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~Tl 216 (394)
+++++.|+++.++|+| .|+|+++++|+++||++|++|+++|+ ..||+||||+||+||+|++.|+++||+||+||
T Consensus 49 ~~~~~~ei~~~v~G~v-~e~~~~ls~d~e~mi~eA~~L~~~~~-----~~~i~IKIP~T~eGl~Ai~~L~~eGI~~NvTL 122 (239)
T COG0176 49 AVEFGKEILKIVPGRV-TEVDEVLSFDAEAMIEEARRLAKLID-----NVGIVIKIPATWEGLKAIKALEAEGIKTNVTL 122 (239)
T ss_pred HHHHHHHHHhcCCCCC-eEeeeeecccHHHHHHHHHHHHHhcC-----cCCeEEEeCCCHHHHHHHHHHHHCCCeeeEEE
Confidence 7888999999999999 99999999999999999999999964 45689999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhh
Q 016178 217 VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL 296 (394)
Q Consensus 217 VFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i 296 (394)
|||+.||++|++||++|||||||||+||+. |+ ..||.+++++|++|+.++++| ++||+|++.++
T Consensus 123 iFS~~QAl~aa~aga~~iSpFvgRi~D~~~----d~----------~~~I~~~~~iy~~y~~~~~~t--~vas~~~~~~~ 186 (239)
T COG0176 123 IFSAAQALLAAEAGATYISPFVGRIDDWGI----DG----------MLGIAEAREIYDYYKQHGAKT--LVASARFPNHV 186 (239)
T ss_pred EecHHHHHHHHHhCCeEEEeecchHHhhcc----Cc----------hHHHHHHHHHHHHhccccceE--EEecCccHHHH
Confidence 999999999999999999999999999983 21 259999999999999987555 55556555555
Q ss_pred H--hhhCCCeecccHHHHHHHHhCCCCCcchhhhhccCChhhhccCCCChHHhhhhhHHHHHHhhchHHHHHHHHHHHHH
Q 016178 297 F--SLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTKWDQLSLASAMGPASVELLAAGLDGY 374 (394)
Q Consensus 297 ~--~laG~D~lTip~~vl~~L~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~ekL~eGI~~F 374 (394)
. +++|||.+|+||+++++|.+|+. +|+++|+.|||++|
T Consensus 187 ~~~~l~G~d~~Tip~~~l~~l~~~~~----------------------------------------~~~~~l~~eGI~~F 226 (239)
T COG0176 187 YIAALAGADVLTIPPDLLKQLLKHGG----------------------------------------AMAVPLLDEGIRKF 226 (239)
T ss_pred HHHHHhCCCcccCCHHHHHHHHhccc----------------------------------------ccccHHHHHHHHHH
Confidence 4 59999999999999999988853 67888999999999
Q ss_pred HHHHHHHHHHHH
Q 016178 375 VNQARRVEDLFE 386 (394)
Q Consensus 375 ~~~~~kLe~~~~ 386 (394)
.+|+++|++.+.
T Consensus 227 ~~D~~~l~~~~~ 238 (239)
T COG0176 227 AKDWEKLLKSLS 238 (239)
T ss_pred HHHHHHHHHhhc
Confidence 999999998764
No 10
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=100.00 E-value=3.2e-58 Score=449.93 Aligned_cols=281 Identities=33% Similarity=0.513 Sum_probs=234.9
Q ss_pred eeccccchhhhhccCC----CCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHHh
Q 016178 70 IVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLA 145 (394)
Q Consensus 70 ivaDt~d~~~i~~~~p----~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~eil 145 (394)
|+.||+|++.|+++.+ .|.||||+++.++..+. +.|++.|......+ ....+..++..++++.+++
T Consensus 1 i~~Dsad~~~i~~~~~~~~~~GvTTNPsii~~a~~~~-~~~~~~i~~l~~~~---------~~~~~~~~~l~~~~~~~~~ 70 (287)
T PF00923_consen 1 IWLDSADRDEIKELLPNGGIDGVTTNPSIIAKALSGS-EAYDEAIKELAKQG---------KSWEEIYDKLAVEDGREAL 70 (287)
T ss_dssp EEEESSSHHHHHHHHHTTTESEEEE-HHHHHHHHTGH-HHHHHHHHHHHHHS---------HHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHhhccccCCCccCHHHHHHHHccc-ccHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHH
Confidence 6899999999999877 99999999999988744 45777766554433 3456678899999999999
Q ss_pred cCC--CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHH
Q 016178 146 KMV--PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQA 223 (394)
Q Consensus 146 ~~v--~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA 223 (394)
+.+ +|+||+||+|++++|+++|+++|++|+++++ ++||+||||+||+||+||++|+++||+||+|+|||+.||
T Consensus 71 ~~lg~~G~vsvqv~p~~~~d~e~~i~~A~~l~~~~~-----r~~v~IKIPaT~~Gi~A~~~L~~~GI~vn~T~vfs~~Qa 145 (287)
T PF00923_consen 71 DLLGKDGPVSVQVDPRLAYDAEEMIEEARRLHALFE-----RPNVVIKIPATEEGIKAIKELEAEGIPVNATLVFSVEQA 145 (287)
T ss_dssp CCHTSSSEEEEE-SGGGTTSHHHHHHHHHHHHHHHH-----GGTEEEEEESSHHHHHHHHHHHHTT-EEEEEEE-SHHHH
T ss_pred HhcCCCceEEEecCCccccCHHHHHHHHHHHHHhcc-----ccCeeEECCCCHHHHHHHHHHhhCCceEEEEecccHHHH
Confidence 999 9999999999999999999999999999986 789999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHhhhCCC
Q 016178 224 AAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVD 303 (394)
Q Consensus 224 ~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~laG~D 303 (394)
.+|++||++||||||||+++|+++.... ....+.++|+.+++++|++|++++++|+||+||+|+++++..++|||
T Consensus 146 ~~aa~AGa~~isp~vgRld~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~t~v~~as~r~~~~v~~l~G~d 220 (287)
T PF00923_consen 146 IAAAQAGASYISPYVGRLDDWGKRLQGE-----DALKGEHDGVALAKEIYQYYRKYGYKTKVLAASFRNVQQVLALAGAD 220 (287)
T ss_dssp HHHHHTT-SEEEEBHHHHHHHHHHHSCC-----HHCGGGSHHHHHHHHHHHHHHHHTESSEEEEBSSSSHHHHHHTTTSS
T ss_pred HHHHhcccceEeeeHHHHHHHhhhhccc-----ccccccccHHHHHHHHHHHHHHhCCCcceeccCcCCHHHHHHHHCCC
Confidence 9999999999999999999999544331 11133468999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHHhCCCCCcchhhhhccCChhhhccCCCChHHhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 016178 304 YIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTKWDQLSLASAMGPASVELLAAGLDGYVNQARRVED 383 (394)
Q Consensus 304 ~lTip~~vl~~L~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~ekL~eGI~~F~~~~~kLe~ 383 (394)
++|+||.++++|.+++.+ ...++. ++.+-...+...++.+++.++++|+.||+++|++++++|++
T Consensus 221 ~vTip~~~l~~l~~~~~~-------~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~f~~~~~~l~~ 285 (287)
T PF00923_consen 221 IVTIPPKVLEALLEHPLT-------EETLDK--------EEAEAVLEALFELGIDLDPVAEELLAEGLEKFADDWDKLLA 285 (287)
T ss_dssp EEEEEHHHHHHHHHHHHH-------HHHHCT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEECCHHHHHHHHhCCCh-------Hhhhch--------hhhhhhhHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998764 122221 11111111112357789999999999999999999999998
Q ss_pred HH
Q 016178 384 LF 385 (394)
Q Consensus 384 ~~ 385 (394)
.|
T Consensus 286 ~~ 287 (287)
T PF00923_consen 286 SI 287 (287)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 11
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=100.00 E-value=7.3e-57 Score=447.29 Aligned_cols=291 Identities=22% Similarity=0.264 Sum_probs=243.5
Q ss_pred cCHHHHhhcccceeccccchhhh-hccCCCCcccChhHHHHHhcC-ChHHHHHHHHHHHHhhh-----hhcccChhhhhh
Q 016178 58 STELDAVSSFSEIVPDTVVFDDF-ERFPPTAATVSSSLLLGICSL-PDTIFRNAVDMALADSS-----CCELENSELRLS 130 (394)
Q Consensus 58 ~~~Ld~L~~~t~ivaDt~d~~~i-~~~~p~daTTNpsli~~~~~n-P~ti~~~ai~~al~~~~-----~~~l~~~~~~~~ 130 (394)
+-|||.|.+ =+.|+|+++.| .++.++|+||||+++.++.++ |. |++.|++.+.+++ ++.+...+++.+
T Consensus 1 s~WlD~i~R---~~l~~g~l~~li~~~~~~g~TsNPsi~~~Ai~~~~~--y~~~i~~~~~~~~~~~~~~~~l~~~di~~a 75 (338)
T cd00955 1 SLWLDNLSR---SFIDNGFLKRLIEEQGVVGVTSNPAIFEKAIAGSAA--YDDQIRALKGQGLDAEAIYEALAIEDIQDA 75 (338)
T ss_pred CCCcccCch---hhccccCHHHHHHhCCCceeccCHHHHHHHHhCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence 358999988 78999999999 899999999999999999998 55 9999999887753 334456778888
Q ss_pred hhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCc
Q 016178 131 CFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGI 210 (394)
Q Consensus 131 ~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI 210 (394)
|+...+.+ +++++++|+||+||||++++|+++||++|++|+++ ++++|+|||||+||+||+||++|+++||
T Consensus 76 ~d~l~p~~----~~~~g~~G~Vs~EVdP~la~d~~~~i~~A~~L~~~-----i~~~nv~IKIPaT~~Gi~Ai~~L~~~GI 146 (338)
T cd00955 76 CDLLAPVY----EQTGGNDGYVSLEVSPRLADDTQGTIAEAKRLWKA-----VGRPNLMIKIPATEAGLPAIEELIAAGI 146 (338)
T ss_pred HHHHHHHH----hhcCCCCCeEEEEecccccCCHHHHHHHHHHHHHh-----cCCCcEEEEeCCCHHHHHHHHHHHHCCC
Confidence 88888877 68999999999999999999999999999999887 6789999999999999999999999999
Q ss_pred eeeEecccCHHHHHHHHHc---C--------------CcEEEechhhhhhhhhcCCCCcccchhh-ccCCCchHHHHHHH
Q 016178 211 QTHLTFVYSFAQAAAAAQA---G--------------ASVIQIFVGRLRDWARNHSGDPEIDDAL-KRGEDPALSLVSKA 272 (394)
Q Consensus 211 ~vN~TlVFS~~QA~aaa~A---G--------------a~~ISpFVgRidd~~~~~~~d~~~~~~~-~~~~d~Gv~~v~~i 272 (394)
+||+|+|||+.||.+|++| | .+||||||||||.+.|+...+ .... ..| ++||++++.+
T Consensus 147 ~vn~TliFs~~Qa~~aa~A~~~Gl~~~~~~g~~~~~~~sv~S~FVsRiD~~~d~~l~~---~~~~~~~g-~~gIa~ak~~ 222 (338)
T cd00955 147 SVNVTLIFSLEQYEAVAEAYLRGLERRVEGGGDLSQVASVASFFVSRVDTLIDKKLDA---PEAKALQG-KVAIANAKLA 222 (338)
T ss_pred ceeEeeecCHHHHHHHHHHHHhhHHHHHhcCCCcccCceEEEEecchhhHhhhccccc---cccccccc-CHHHHHHHHH
Confidence 9999999999999999998 3 389999999997777654432 0011 233 7999999999
Q ss_pred HHHHHHcCC--------------------chHHHHhhcCChhhhHhhhCCCee-cccHHHHHHHHhCCCCCcchhhhhcc
Q 016178 273 YNYIHKYGH--------------------KSKLMAAAVRNKQDLFSLLGVDYI-IAPLKVLQSLKESAISPDEKYSFVRR 331 (394)
Q Consensus 273 y~~~~~~g~--------------------~t~vLaAS~R~~~~i~~laG~D~l-Tip~~vl~~L~~~~~~~~~~~a~~~~ 331 (394)
|++|+++++ .|.+|.+++|+..++.+|+|||.+ |+|+..++.+.+|+.. .++
T Consensus 223 Y~~~~~~~~~~~~~~l~~~ga~~qr~LwASTgvk~~~~~~~~yV~~LiG~dtvnt~P~~t~~a~~~~g~~-------~~~ 295 (338)
T cd00955 223 YQEYQEKFSGPRWAALAAAGAKPQRLLWASTGVKNPAYPDVLYVEELIGPDTVNTMPDATLKAFADHGEV-------RPT 295 (338)
T ss_pred HHHHHHHCCchhhHHHHhcCCcccccceecccccCCccCCcccHHhccCCCcccCCHHHHHHHHHhcCCc-------ccc
Confidence 999999887 677888888899999999999998 6888888888888774 455
Q ss_pred CChhhhccCCCChHHhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 016178 332 LSPQSAAMYNFTEEELTKWDQLSLASAMGPASVELLAAGLDGYVNQAR 379 (394)
Q Consensus 332 l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~ekL~eGI~~F~~~~~ 379 (394)
+++........ .+.+++ +++|+|+|+++|++|||++|+++++
T Consensus 296 l~~~~~~a~~~-~~~l~~-----~gid~d~v~~~L~~eGi~~F~~af~ 337 (338)
T cd00955 296 LEEGLEEAERV-LAELER-----LGIDLDAVTEKLLKEGVKKFKDSFE 337 (338)
T ss_pred CCCchhhHHHh-hHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 65432222211 122233 3779999999999999999999986
No 12
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=100.00 E-value=4.1e-55 Score=421.15 Aligned_cols=234 Identities=24% Similarity=0.251 Sum_probs=212.0
Q ss_pred eeccccchhhhhccC----CCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHHh
Q 016178 70 IVPDTVVFDDFERFP----PTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLA 145 (394)
Q Consensus 70 ivaDt~d~~~i~~~~----p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~eil 145 (394)
++.||+|.+.|+++. ++|+||||+++.++...|. |.+.+..++.+..+.. .....++.+..++.++++++++.
T Consensus 2 ~~lDt~d~~~i~~~~~~~~~~GvTTNPsiv~~~~~~~~--~~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~ 78 (252)
T cd00439 2 PWYDTLDRPATDLLPLIRGVRGVTTNPSIIQAAISTSN--AYNDQFRTLVESGKDI-ESAYWELVVKDIQDACKLFEPIY 78 (252)
T ss_pred EEeeCCCHHHHHHhhccCCCCeeccCHHHHHHHhcCch--hhHHHHHHHHHccccc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999998765 8999999999999999986 7777888887766543 34455678888899999999999
Q ss_pred cCC--CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHH
Q 016178 146 KMV--PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQA 223 (394)
Q Consensus 146 ~~v--~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA 223 (394)
+.+ +|+||+||+||+++|+++|+++|++|.+++ +++|++||||+||+|++|+++|+++||+||+|+|||++||
T Consensus 79 ~~~~~~G~Vs~ev~~~~~~d~~~mi~~A~~l~~~~-----~~~nv~IKIPaT~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa 153 (252)
T cd00439 79 DQTEADGRVSVEVSARLADDTQGMVEAAKYLSKVV-----NRRNIYIKIPATAEGIPAIKDLIAAGISVNVTLIFSIAQY 153 (252)
T ss_pred HhhCCCCeEEEEEeccccCCHHHHHHHHHHHHHhc-----CcccEEEEeCCCHHHHHHHHHHHHCCCceeeeeecCHHHH
Confidence 999 999999999999999999999999999995 3589999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHhhhCCC
Q 016178 224 AAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVD 303 (394)
Q Consensus 224 ~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~laG~D 303 (394)
.+|++||++||||||||+++|++++..+... +...++|++.++++|++|++++++|++|||||||++++.+++|||
T Consensus 154 ~~aa~Aga~~ispfvgRid~~~~~~~~~~~~----d~~~~~gi~~~~~~~~~~~~~~~~tkiL~AS~r~~~~v~~l~G~d 229 (252)
T cd00439 154 EAVADAGTSVASPFVSRIDTLMDKMLEQIGL----DLRGKAGVAQVTLAYKLYKQKFKKQRVLWASFSDTLYVAPLIGCD 229 (252)
T ss_pred HHHHHcCCCEEEEeccHHHHHhhhhcccccc----ccccCcHHHHHHHHHHHHHHhCCCCeEEEEeeCCHHHHHHhhCCC
Confidence 9999999999999999999999877654322 222368999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHH
Q 016178 304 YIIAPLKVLQSL 315 (394)
Q Consensus 304 ~lTip~~vl~~L 315 (394)
++|+||+++++|
T Consensus 230 ~vT~~p~v~~~l 241 (252)
T cd00439 230 TVTTMPDQALEA 241 (252)
T ss_pred eeecCHHHHHHH
Confidence 999999999999
No 13
>TIGR00876 tal_mycobact transaldolase, mycobacterial type. This model describes one of three related but easily separable famiiles of known and putative transaldolases. This family and the family typified by E. coli TalA and TalB both contain experimentally verified examples.
Probab=100.00 E-value=6.3e-50 Score=397.70 Aligned_cols=301 Identities=19% Similarity=0.221 Sum_probs=242.9
Q ss_pred CccCHHHHhhcccceeccccch-hhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhh-----hhhcccChhhhh
Q 016178 56 GLSTELDAVSSFSEIVPDTVVF-DDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADS-----SCCELENSELRL 129 (394)
Q Consensus 56 ~~~~~Ld~L~~~t~ivaDt~d~-~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~-----~~~~l~~~~~~~ 129 (394)
|.+-|||.|.+ =+.++||| +.|.++.|+|+||||+++.++.+++ ..|++.|+.....+ .++.|...+++.
T Consensus 2 G~S~WlD~i~R---~~l~~G~l~~lI~~~~~~G~TsNPsif~~Ai~~~-~~Y~~~i~~l~~~g~~~~~~~~~La~~di~~ 77 (350)
T TIGR00876 2 EFSLWCDDIER---DFLENGDFLELIDKGAICGATSNPSIFCEAISEG-AFYDAEIAELAAKGADADAIIETLALDDILQ 77 (350)
T ss_pred CeeeeecCCCh---hhhcCCCHHHHHHhCCCCcccCCHHHHHHHHhCC-HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHH
Confidence 67899999988 78899999 7888999999999999999999998 67999998865432 244455678899
Q ss_pred hhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcC
Q 016178 130 SCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEG 209 (394)
Q Consensus 130 ~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eG 209 (394)
+|+...+.+ +++++++|+||+||||++++|+++|+++|++|+++ ++++|+|||||+||+||+|+++|+++|
T Consensus 78 A~D~L~p~~----e~~~g~~G~VS~EVdP~la~d~e~~i~eA~~L~~~-----~~~~nv~IKIPaT~~Gi~Ai~~L~~~G 148 (350)
T TIGR00876 78 ACDALMPLW----EDSDGNDGRISIEIDPFLADDAAKSIDEAIELFKI-----LDRPNLFIKIPASEAGIEAISALLAAG 148 (350)
T ss_pred HHHHHHHHH----HHhCCCCCcEEEEEccccccCHHHHHHHHHHHHHh-----hCCCCEEEEeCCCHHHHHHHHHHHHCC
Confidence 999999888 89999999999999999999999999999999998 678999999999999999999999999
Q ss_pred ceeeEecccCHHHHHHHHHc-----------C------CcEEEechhhhhhhhhcCCCCcccchhhc-cCCCchHHHHHH
Q 016178 210 IQTHLTFVYSFAQAAAAAQA-----------G------ASVIQIFVGRLRDWARNHSGDPEIDDALK-RGEDPALSLVSK 271 (394)
Q Consensus 210 I~vN~TlVFS~~QA~aaa~A-----------G------a~~ISpFVgRidd~~~~~~~d~~~~~~~~-~~~d~Gv~~v~~ 271 (394)
|+||+|+|||++|+.+|++| | .+|+|+||||+|.+.|+............ .| +.||++++.
T Consensus 149 I~vNvTliFS~~q~~~v~eA~~~Gl~~~~~~G~~~~~v~sVaS~FvsRvD~~vD~~l~~~~~~~a~~l~g-~~gIanA~l 227 (350)
T TIGR00876 149 IPVNVTLIFSPKIAGEIADALAKEAEKARQAGHSLSKIHAVASFFVSRFDKEIDKLLDKIGSRQALELQA-QAGIANARL 227 (350)
T ss_pred CceeEEEeecHHHHHHHHHHHHHHHHHHHHcCCCcccCceEEEEeeehhhhhhhhhhhhccchhHHHHhh-hHHHHHHHH
Confidence 99999999999999999877 3 48999999999999887653221111111 33 579999999
Q ss_pred HHHHHHH-c--CCchHHHHhhcCChhhhH------------------hhhCCCee-cccHHHHHHHHhCCCCCcchhhhh
Q 016178 272 AYNYIHK-Y--GHKSKLMAAAVRNKQDLF------------------SLLGVDYI-IAPLKVLQSLKESAISPDEKYSFV 329 (394)
Q Consensus 272 iy~~~~~-~--g~~t~vLaAS~R~~~~i~------------------~laG~D~l-Tip~~vl~~L~~~~~~~~~~~a~~ 329 (394)
+|+.|++ + +..|+.|.+...++++.+ +|.|.+.+ |+|+..++.+.+|+... .
T Consensus 228 ~y~~~~e~~~~~~~~~~L~~~ga~~qR~LwASTgvK~p~~~d~~YV~~Ligp~tVnT~P~~Tl~Af~dhg~~~------~ 301 (350)
T TIGR00876 228 AYATYREVFEDSDCYRQIKQDAAKLQRPLFASTGVKNNDLADDLYIKALCAKHSINTAPEEAIDAVADDGNIE------C 301 (350)
T ss_pred HHHHHHHHhccCHHHHHHHHCCCCCCceeeecCCCCCCcccccccHHHhcCCCccccCCHHHHHHHHHcCCcC------C
Confidence 9998876 3 456666666555555553 48898877 99999999999998741 1
Q ss_pred ccCChhhhccCCCChHHhhhhhHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 016178 330 RRLSPQSAAMYNFTEEELTKWDQLS-LASAMGPASVELLAAGLDGYVNQARRVED 383 (394)
Q Consensus 330 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~a~ekL~eGI~~F~~~~~kLe~ 383 (394)
..+... ..+++ ..++++. .+.|++.++.+|+.||+++|++++++|.+
T Consensus 302 ~~l~~~------~~~a~-~~l~~l~~~GId~~~v~~~L~~eGv~~F~~a~~~LL~ 349 (350)
T TIGR00876 302 DTPLGT------ASDAE-AFFDELGAHGIDLEDTAAKLEEEGLIAFEASFEELLQ 349 (350)
T ss_pred CCCCCc------HHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223221 11111 1122222 46699999999999999999999999864
No 14
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=100.00 E-value=2.5e-50 Score=379.25 Aligned_cols=195 Identities=29% Similarity=0.526 Sum_probs=171.7
Q ss_pred ceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHHhcCC
Q 016178 69 EIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMV 148 (394)
Q Consensus 69 ~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~eil~~v 148 (394)
.++.||+|+++|+++.+.+ +|.|+|+|| +|+++. + +.+..+.+++++.+
T Consensus 2 k~~lDsAd~~~i~~~~~~~------~i~GvTTNP-sll~k~-------g-----------------~~~~~~~~~i~~~~ 50 (213)
T TIGR00875 2 KFFLDTANVEEIKKAAELG------ILAGVTTNP-SLIAKE-------G-----------------RSFWEVLKEIQEAV 50 (213)
T ss_pred eEEEcCCCHHHHHHHHhcC------CcceEeCCH-HHHHhc-------C-----------------CCHHHHHHHHHHhc
Confidence 3899999999999986633 344555555 444331 1 12344566888888
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHH
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQ 228 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~ 228 (394)
+|+||+|| +++|+++|+++|++|.+++ +|++||||+||+|++||++|+++||+||+|+|||++||.+|++
T Consensus 51 ~g~vs~qv---~~~~~~~mi~~a~~l~~~~-------~~i~iKIP~T~~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~ 120 (213)
T TIGR00875 51 EGPVSAET---ISLDAEGMVEEAKELAKLA-------PNIVVKIPMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAAK 120 (213)
T ss_pred CCcEEEEE---eeCCHHHHHHHHHHHHHhC-------CCeEEEeCCCHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHH
Confidence 99999999 7899999999999999995 7999999999999999999999999999999999999999999
Q ss_pred cCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeec
Q 016178 229 AGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYII 306 (394)
Q Consensus 229 AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lT 306 (394)
||+.||||||||++||+ ++|+..+++++++|+++|++|+||+|||||++|+++ ++|||++|
T Consensus 121 aGa~yispyvgRi~d~g-----------------~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vT 183 (213)
T TIGR00875 121 AGATYVSPFVGRLDDIG-----------------GDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIAT 183 (213)
T ss_pred cCCCEEEeecchHHHcC-----------------CCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEE
Confidence 99999999999999985 369999999999999999999999999999999997 79999999
Q ss_pred ccHHHHHHHHhCCCC
Q 016178 307 APLKVLQSLKESAIS 321 (394)
Q Consensus 307 ip~~vl~~L~~~~~~ 321 (394)
+||+++++|.+++.+
T Consensus 184 ip~~vl~~l~~~p~t 198 (213)
T TIGR00875 184 MPLDVMQQLFNHPLT 198 (213)
T ss_pred cCHHHHHHHHcCCch
Confidence 999999999988875
No 15
>PRK01362 putative translaldolase; Provisional
Probab=100.00 E-value=1.1e-49 Score=374.94 Aligned_cols=192 Identities=30% Similarity=0.481 Sum_probs=171.7
Q ss_pred ceeccccchhhhhccCCC----CcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHH
Q 016178 69 EIVPDTVVFDDFERFPPT----AATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (394)
Q Consensus 69 ~ivaDt~d~~~i~~~~p~----daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~ei 144 (394)
.++.||+|+++|+++.+. |.||||+++.+.. +++.++.+++
T Consensus 2 ~~~lDsA~~~ei~~~~~~~~i~GvTTNPsll~k~g-----------------------------------~~~~~~~~~i 46 (214)
T PRK01362 2 KFFIDTANVEEIKEANELGVLDGVTTNPSLIAKEG-----------------------------------RDFEEVIKEI 46 (214)
T ss_pred EEEEecCCHHHHHHHHhCCCcceEcCCHHHHHhcC-----------------------------------CCHHHHHHHH
Confidence 489999999999987664 5555555555421 2244566688
Q ss_pred hcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHHH
Q 016178 145 AKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAA 224 (394)
Q Consensus 145 l~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~ 224 (394)
++.++|+||+||+ ++|+++|+++|++|.+++ +|++||||+||+|++|+++|+++||+||+|+|||+.||.
T Consensus 47 ~~~i~g~vs~qv~---~~d~~~m~~~a~~l~~~~-------~~i~iKIP~T~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~ 116 (214)
T PRK01362 47 CSIVDGPVSAEVI---ALDAEGMIKEGRELAKIA-------PNVVVKIPMTPEGLKAVKALSKEGIKTNVTLIFSANQAL 116 (214)
T ss_pred HHhcCCCEEEEEe---eCCHHHHHHHHHHHHHhC-------CCEEEEeCCCHHHHHHHHHHHHCCCceEEeeecCHHHHH
Confidence 8888999999995 799999999999999985 799999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCC
Q 016178 225 AAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGV 302 (394)
Q Consensus 225 aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~ 302 (394)
+|++||+.||||||||++||+ ++|+..+++++++++++|++|+||+|||||++|+++ ++||
T Consensus 117 ~Aa~aGa~yispyvgRi~d~g-----------------~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~ 179 (214)
T PRK01362 117 LAAKAGATYVSPFVGRLDDIG-----------------TDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGA 179 (214)
T ss_pred HHHhcCCcEEEeecchHhhcC-----------------CCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCC
Confidence 999999999999999999985 369999999999999999999999999999999998 7999
Q ss_pred CeecccHHHHHHHHhCCCCC
Q 016178 303 DYIIAPLKVLQSLKESAISP 322 (394)
Q Consensus 303 D~lTip~~vl~~L~~~~~~~ 322 (394)
|++|+||+++++|.+++.+.
T Consensus 180 d~iTi~~~vl~~l~~~p~t~ 199 (214)
T PRK01362 180 DIATIPYKVIKQLFKHPLTD 199 (214)
T ss_pred CEEecCHHHHHHHHcCCchH
Confidence 99999999999999998863
No 16
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=3.9e-48 Score=366.00 Aligned_cols=197 Identities=20% Similarity=0.336 Sum_probs=170.8
Q ss_pred ceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHHhcCC
Q 016178 69 EIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMV 148 (394)
Q Consensus 69 ~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~eil~~v 148 (394)
.++.||+|+++|+++.+.+ +|.|+|||| ||+++. |+ +++..+.+++++.+
T Consensus 2 ~~flDtAd~~~i~~~~~~~------~i~GvTTNP-sll~k~-------g~----------------~~~~~~~~~i~~~i 51 (222)
T PRK12656 2 EFMLDTLNLEAIKKWHEIL------PLAGVTSNP-SIAKKE-------GD----------------IDFFERIREVREII 51 (222)
T ss_pred EEEEecCCHHHHHHHHhcC------CcceEeCCH-HHHHhc-------CC----------------CCHHHHHHHHHHHh
Confidence 3789999999999976532 455555555 444441 11 23555667888887
Q ss_pred C--CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHHHHH
Q 016178 149 P--GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAA 226 (394)
Q Consensus 149 ~--G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aa 226 (394)
+ |+||+|| +++|+++|+++|++|.+.+ ++|++||||+|++|++||++|+++||+||+|+|||++||.+|
T Consensus 52 ~~~~~vs~ev---~~~~~~~mi~eA~~l~~~~------~~nv~VKIP~T~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~A 122 (222)
T PRK12656 52 GDEASIHVQV---VAQDYEGILKDAHEIRRQC------GDDVYIKVPVTPAGLAAIKTLKAEGYHITATAIYTVFQGLLA 122 (222)
T ss_pred CCCCcEEEEE---EECCHHHHHHHHHHHHHHh------CCCEEEEeCCCHHHHHHHHHHHHCCCceEEeeeCCHHHHHHH
Confidence 4 5899999 8999999999999998754 489999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCe
Q 016178 227 AQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDY 304 (394)
Q Consensus 227 a~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~ 304 (394)
+++||.||||||||++|.+ .+|+..++++.+.|+.++++|+|||||+||++|+++ ++|||+
T Consensus 123 a~aGa~yvsPyvgRi~d~g-----------------~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~ 185 (222)
T PRK12656 123 IEAGADYLAPYYNRMENLN-----------------IDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQA 185 (222)
T ss_pred HHCCCCEEecccchhhhcC-----------------CCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCE
Confidence 9999999999999999864 258999999999999999999999999999999998 689999
Q ss_pred ecccHHHHHHHHhCCCC
Q 016178 305 IIAPLKVLQSLKESAIS 321 (394)
Q Consensus 305 lTip~~vl~~L~~~~~~ 321 (394)
+|+||+++++|.+|+.+
T Consensus 186 vTvp~~vl~~l~~~p~t 202 (222)
T PRK12656 186 VTAGPDVFEAAFAMPSI 202 (222)
T ss_pred EecCHHHHHHHhcCCcH
Confidence 99999999999999885
No 17
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=4.5e-48 Score=365.36 Aligned_cols=191 Identities=26% Similarity=0.354 Sum_probs=166.7
Q ss_pred ceeccccchhhhhccCC----CCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHH
Q 016178 69 EIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (394)
Q Consensus 69 ~ivaDt~d~~~i~~~~p----~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~ei 144 (394)
.++.||+|+++|+++.. .|.||||||+.+...+ +....++|
T Consensus 2 ~~flDtA~~~~i~~~~~~~~i~GvTTNPsll~k~g~~-----------------------------------~~~~~~~i 46 (220)
T PRK12655 2 ELYLDTANVAEVERLARIFPIAGVTTNPSIIAASKES-----------------------------------IWEVLPRL 46 (220)
T ss_pred EEEEecCCHHHHHHHHhCCCccEEeCCHHHHHhcCCC-----------------------------------HHHHHHHH
Confidence 38999999999998644 4455555555443221 22233466
Q ss_pred hcCC--CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHH
Q 016178 145 AKMV--PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQ 222 (394)
Q Consensus 145 l~~v--~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~Q 222 (394)
++.+ .|+||+|| ++.|+++|+++|++|.+++ +|++||||+||+|++||++|+++||+||+|+|||+.|
T Consensus 47 ~~~~~~~~~v~~qv---~~~d~e~mi~eA~~l~~~~-------~nv~IKIP~T~~Gl~Ai~~L~~~GI~vn~T~vfs~~Q 116 (220)
T PRK12655 47 QKAIGGEGILFAQT---MSRDAQGMVEEAKRLRNAI-------PGIVVKIPVTAEGLAAIKKLKKEGIPTLGTAVYSAAQ 116 (220)
T ss_pred HHHhCCCCCEEEEE---eeCCHHHHHHHHHHHHHhC-------CCEEEEeCCCHHHHHHHHHHHHCCCceeEeEecCHHH
Confidence 6665 58999999 8899999999999999984 7999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hh
Q 016178 223 AAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LL 300 (394)
Q Consensus 223 A~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--la 300 (394)
|.+|++||+.||||||||++|.+ .+|+..+++++++|+.|+++|+||+|||||++|+.+ ++
T Consensus 117 a~~Aa~aGa~yIspyvgR~~~~g-----------------~dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v~~~~~~ 179 (220)
T PRK12655 117 GLLAALAGAKYVAPYVNRVDAQG-----------------GDGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLA 179 (220)
T ss_pred HHHHHHcCCeEEEeecchHhHcC-----------------CCHHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHc
Confidence 99999999999999999999853 369999999999999999999999999999999998 79
Q ss_pred CCCeecccHHHHHHHHhCCCC
Q 016178 301 GVDYIIAPLKVLQSLKESAIS 321 (394)
Q Consensus 301 G~D~lTip~~vl~~L~~~~~~ 321 (394)
|||++|+|++++++|.+++.+
T Consensus 180 G~d~vTip~~vl~~l~~~p~t 200 (220)
T PRK12655 180 GCQSITLPLDVAQQMLNTPAV 200 (220)
T ss_pred CCCEEECCHHHHHHHHcCCCh
Confidence 999999999999999999886
No 18
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=7.1e-48 Score=364.10 Aligned_cols=195 Identities=25% Similarity=0.359 Sum_probs=166.3
Q ss_pred ceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHHhcCC
Q 016178 69 EIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMV 148 (394)
Q Consensus 69 ~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~eil~~v 148 (394)
.++.||+|++.|+++.+.+ +|.|+|+|| ||+++. |+ .+..+.++|++.+
T Consensus 2 k~flDtA~~~~i~~~~~~~------~i~GvTTNP-sll~k~-------g~-----------------~~~~~~~~i~~~~ 50 (220)
T PRK12653 2 ELYLDTSDVVAVKALSRIF------PLAGVTTNP-SIIAAG-------KK-----------------PLEVVLPQLHEAM 50 (220)
T ss_pred EEEEecCCHHHHHHHHhCC------CccEEeCCH-HHHHhc-------CC-----------------CHHHHHHHHHHHh
Confidence 3899999999999875532 344444444 333331 11 1222234555555
Q ss_pred C--CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHHHHH
Q 016178 149 P--GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAA 226 (394)
Q Consensus 149 ~--G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aa 226 (394)
+ |+||+|| +++|+++|+++|++|.+++ +|++||||+||+|++||+.|+++||+||+|+|||+.||.+|
T Consensus 51 ~~~~~v~~Qv---~~~d~e~mi~ea~~l~~~~-------~ni~IKIP~T~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~A 120 (220)
T PRK12653 51 GGQGRLFAQV---MATTAEGMVNDARKLRSII-------ADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLS 120 (220)
T ss_pred CCCCcEEEEE---ecCCHHHHHHHHHHHHHhC-------CCEEEEeCCCHHHHHHHHHHHHcCCCeeEEEecCHHHHHHH
Confidence 3 6999999 7899999999999999984 79999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCe
Q 016178 227 AQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDY 304 (394)
Q Consensus 227 a~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~ 304 (394)
++|||.||||||||++|++ .+|+..+++++++|++++++|+||+|||||++|+++ ++|||+
T Consensus 121 a~aGa~yIspyvgR~~~~g-----------------~dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~ 183 (220)
T PRK12653 121 ALAGAEYVAPYVNRIDAQG-----------------GSGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAGCES 183 (220)
T ss_pred HhcCCcEEEeecChHhhcC-----------------CChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCE
Confidence 9999999999999999864 369999999999999999999999999999999998 899999
Q ss_pred ecccHHHHHHHHhCCCC
Q 016178 305 IIAPLKVLQSLKESAIS 321 (394)
Q Consensus 305 lTip~~vl~~L~~~~~~ 321 (394)
+|+|++++++|.+++.+
T Consensus 184 vTip~~vl~~l~~~p~t 200 (220)
T PRK12653 184 ITLPLDVAQQMISYPAV 200 (220)
T ss_pred EECCHHHHHHHHcCCch
Confidence 99999999999999876
No 19
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=100.00 E-value=9.5e-47 Score=413.71 Aligned_cols=304 Identities=22% Similarity=0.282 Sum_probs=248.5
Q ss_pred CCccCHHHHhhcccceeccccchhh-hhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhh------hhhcccChhh
Q 016178 55 AGLSTELDAVSSFSEIVPDTVVFDD-FERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADS------SCCELENSEL 127 (394)
Q Consensus 55 ~~~~~~Ld~L~~~t~ivaDt~d~~~-i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~------~~~~l~~~~~ 127 (394)
-|.+-|||.|.+ =+.++|++.. |.++.++|+||||+++.++.+.- ..|+..|.+.+.++ .++.+...|+
T Consensus 10 ~gqsiWlD~l~R---~~l~~g~l~~li~~~~~~GvTsNPsIf~~Ai~~~-~~Y~~~i~~l~~~~~~~~~~~~~~L~~~di 85 (948)
T PRK09533 10 HGQSVWLDFLAR---GFIAKGELKRLVEEDGLRGVTSNPAIFEKAIGSS-DEYDDAIKAALAEGDRSVIELYETLAIEDI 85 (948)
T ss_pred cCcEEeecccch---hcccCchHHHHHHhCCCceeecCHHHHHHHHhCC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 356778888877 6778899987 67889999999999999998743 34999999887765 3455667889
Q ss_pred hhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHH
Q 016178 128 RLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLES 207 (394)
Q Consensus 128 ~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~ 207 (394)
+.+|+..++.+ +..++.+|+||+||||++++|+++||++|++|++. ++++|+|||||+||+||+||++|.+
T Consensus 86 ~~A~d~l~p~~----~~~~g~~G~VS~EV~P~la~d~e~~i~eA~~L~~~-----v~~~nv~IKIPaT~~Gl~Ai~~L~~ 156 (948)
T PRK09533 86 QAAADVLRPVY----DATDGADGFVSLEVSPYLALDTEGTIAEARRLWAA-----VDRPNLMIKVPATPEGLPAIRQLIA 156 (948)
T ss_pred HHHHHHHHHHH----HhcCCCCCeEEEEEecccccCHHHHHHHHHHHHHh-----cCCCCEEEEeCCCHHHHHHHHHHHH
Confidence 99999999999 88999999999999999999999999999999987 7789999999999999999999999
Q ss_pred cCceeeEecccCHHHHHHHHHc-----------C------CcEEEechhhhhhhhhcCCCCc-------ccchhh--ccC
Q 016178 208 EGIQTHLTFVYSFAQAAAAAQA-----------G------ASVIQIFVGRLRDWARNHSGDP-------EIDDAL--KRG 261 (394)
Q Consensus 208 eGI~vN~TlVFS~~QA~aaa~A-----------G------a~~ISpFVgRidd~~~~~~~d~-------~~~~~~--~~~ 261 (394)
+||+||+|+|||++|+.+|++| | ++||||||||+|+|+|++.... +..+.+ .+|
T Consensus 157 ~GI~vn~TliFS~~q~~~~~~A~~~gle~~~~aG~d~~~i~sv~S~fvsRiD~~~d~~l~~~~~~~~dp~~~~~~~~l~g 236 (948)
T PRK09533 157 EGINVNVTLLFSQDVYEEVAEAYISGLEARAAKGGDPSHVASVASFFVSRIDSAVDKRLDEKIAAANDPAEKAALEALKG 236 (948)
T ss_pred CCCeeeEEEEecHHHHHHHHHHHHHHHHHHHhcCCCcccCceEEEEehhhHHHHHHhhhhhhccccCCcchhhhhhhhcc
Confidence 9999999999999999999966 7 8999999999999998866432 111111 233
Q ss_pred CCchHHHHHHHHHHHHH------------cCCc-hHHHHhh-------cCChhhhHhhhCCCee-cccHHHHHHHHhCCC
Q 016178 262 EDPALSLVSKAYNYIHK------------YGHK-SKLMAAA-------VRNKQDLFSLLGVDYI-IAPLKVLQSLKESAI 320 (394)
Q Consensus 262 ~d~Gv~~v~~iy~~~~~------------~g~~-t~vLaAS-------~R~~~~i~~laG~D~l-Tip~~vl~~L~~~~~ 320 (394)
+.||++++.+|+.|++ .|.+ .+.|||| .+++..+-+|.|.+.+ |+|++.++.+.+|+.
T Consensus 237 -k~~ianAk~ay~~~~~~~~~~rw~~l~~~ga~~qR~LwASTg~K~p~~~d~~Yv~~Lig~~tVnT~P~~tl~A~~~hg~ 315 (948)
T PRK09533 237 -KVAIANAKLAYQRYKRLFAGPRWEALAAKGAKPQRLLWASTGTKNKAYSDVLYVEELIGPDTVNTMPPATLDAFRDHGK 315 (948)
T ss_pred -HHHHHHHHHHHHHHHHHhcchhHHHHHhCCCCcceeEEeecCCCCcccCCcccHHHhcCcCcccCCCHHHHHHHHhcCC
Confidence 5799999999999873 4555 6777888 5555566789999877 999999999999987
Q ss_pred CCcchhhhhccCChhhhccCCCChHHhhhhhHH-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016178 321 SPDEKYSFVRRLSPQSAAMYNFTEEELTKWDQL-SLASAMGPASVELLAAGLDGYVNQARRVEDLFE 386 (394)
Q Consensus 321 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~a~ekL~eGI~~F~~~~~kLe~~~~ 386 (394)
. ..+++. +..+++ .-++++ ..+++++.++.+|+.||+++|++++++|.+.++
T Consensus 316 ~-------~~~~~~------~~~~a~-~~l~~l~~~gId~~~v~~~L~~eGv~~F~~a~~~Ll~~~~ 368 (948)
T PRK09533 316 V-------RATLEE------DVDEAR-AVLADLAEAGISLDAVTDKLVAEGVQLFADAFDKLLGAVA 368 (948)
T ss_pred c-------cccCCC------ChHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 233432 121221 112222 246689999999999999999999999999986
No 20
>PRK03903 transaldolase; Provisional
Probab=100.00 E-value=1.1e-45 Score=357.95 Aligned_cols=236 Identities=22% Similarity=0.286 Sum_probs=194.1
Q ss_pred hhcccChhhhhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhH
Q 016178 119 CCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG 198 (394)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eG 198 (394)
++.|...|++.+|++..+.+. - +.+|+||+||||++++|+++||++|++|+++ ++++|+|||||+||+|
T Consensus 18 ye~la~~Di~~a~d~l~p~~~----~--g~~G~VS~EV~P~la~d~~~~i~ea~~L~~~-----~~~~nv~IKIPaT~~G 86 (274)
T PRK03903 18 YEELAIKDIKKAADKLLPLYE----K--PDDGFISIEIDPFLEDDAAGSIEEGKRLYKT-----IGRPNVMIKVPATKAG 86 (274)
T ss_pred HHHHHHHHHHHHHHHhHHHhc----C--CCCCeEEEEEccccccCHHHHHHHHHHHHHh-----cCCCCEEEEeCCCHHH
Confidence 334567788999999888883 2 7899999999999999999999999999887 6789999999999999
Q ss_pred HHHHHHHHHcCceeeEecccCHHHHHHHHHc---CC--------cEEEechhhhhhhhhcCCCCcccchhhccCCCchHH
Q 016178 199 IEASRLLESEGIQTHLTFVYSFAQAAAAAQA---GA--------SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALS 267 (394)
Q Consensus 199 i~A~~~L~~eGI~vN~TlVFS~~QA~aaa~A---Ga--------~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~ 267 (394)
++||++|.++||+||+|+|||++||.+|++| |+ +||||||||+|++++.+..... + . .+.||+
T Consensus 87 l~Ai~~L~~~GI~vn~TliFS~~Qa~~~a~A~~~Ga~~~~~~~~sviS~fVgRiD~~~d~~l~~~~----l-~-~~~gIa 160 (274)
T PRK03903 87 YEAMSALMKKGISVNATLIFSPEQAKECAEALNEGLKKNTKDPKAVISVFVSRFDRLLDPKLAPKN----L-Q-AKSGIM 160 (274)
T ss_pred HHHHHHHHHCCCcEEEeeecCHHHHHHHHHHHHcCcccccccCCceeeeecchHhhhccccccccc----c-c-ccHHHH
Confidence 9999999999999999999999999998776 96 5699999999999876554321 1 2 368999
Q ss_pred HHHHHHHHHHHcC-CchHHHHhh--cCC----hhhhHh--hhCCCeecccHHHHHHHHhCCCCCcchhhhhccCChhhhc
Q 016178 268 LVSKAYNYIHKYG-HKSKLMAAA--VRN----KQDLFS--LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAA 338 (394)
Q Consensus 268 ~v~~iy~~~~~~g-~~t~vLaAS--~R~----~~~i~~--laG~D~lTip~~vl~~L~~~~~~~~~~~a~~~~l~~~~~~ 338 (394)
+++++|++|+++| .++++|||| +|| ..++.+ ..|+++.|+|+++++++.+|+.. .+++......
T Consensus 161 ~a~~~y~~~~~~g~~~~riL~AStg~Kn~~~~~~~yv~~L~~g~~v~T~P~~tl~a~~~hg~~-------~~~~~~~~~~ 233 (274)
T PRK03903 161 NATKCYNQIEQHANKNIRTLFASTGVKGDDLPKDYYIKELLFKNSINTAPLDTIEAFLKDGNT-------EPKKPLKIEE 233 (274)
T ss_pred HHHHHHHHHHHcCCCCcEEEEEecccCCCCCChHHHHHHHhCCCCeeeCCHHHHHHHHhcCCc-------cCCCCCCHHH
Confidence 9999999999984 679999999 799 888887 58889999999999999999874 2222210000
Q ss_pred cCCCChHHhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 016178 339 MYNFTEEELTKWDQLSLASAMGPASVELLAAGLDGYVNQARRVEDL 384 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~d~~a~ekL~eGI~~F~~~~~kLe~~ 384 (394)
. +.-+..|. ..+.|++.++++|+.||+++|++++++|.+.
T Consensus 234 ~----~~f~~~~~--~~gid~~~v~~~L~~eg~~~F~~af~~ll~~ 273 (274)
T PRK03903 234 I----EAFFKELK--SHNIDLENTYQKLLKDGLEAFKQAFEDILKS 273 (274)
T ss_pred H----HHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 00112342 3466999999999999999999999998764
No 21
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=100.00 E-value=2.4e-45 Score=345.06 Aligned_cols=193 Identities=30% Similarity=0.494 Sum_probs=172.8
Q ss_pred eeccccchhhhhccCC----CCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHHh
Q 016178 70 IVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLA 145 (394)
Q Consensus 70 ivaDt~d~~~i~~~~p----~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~eil 145 (394)
++.||+|+++|+++.+ .|.||||+++.+.... ++..+.++++
T Consensus 2 ~~lDsa~~~ei~~~~~~~~i~GvTTNPsll~k~~~~----------------------------------~~~~~~~~i~ 47 (211)
T cd00956 2 IFLDTADLEEIKKASETGLLDGVTTNPSLIAKSGRI----------------------------------DFEAVLKEIC 47 (211)
T ss_pred EEecCCCHHHHHHHHhcCCcCccccCHHHHHhcCCc----------------------------------CHHHHHHHHH
Confidence 7999999999999866 4677777776653221 2334455777
Q ss_pred cCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHHHH
Q 016178 146 KMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAA 225 (394)
Q Consensus 146 ~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~a 225 (394)
+.++|+||+|| .++|.++|+++|++|.+++ +|++||||+||+|++|+++|+++||+||+|+|||++||.+
T Consensus 48 ~~~~~~v~~qv---~~~~~e~~i~~a~~l~~~~-------~~~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~ 117 (211)
T cd00956 48 EIIDGPVSAQV---VSTDAEGMVAEARKLASLG-------GNVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIFSAAQALL 117 (211)
T ss_pred HhcCCCEEEEE---EeCCHHHHHHHHHHHHHhC-------CCEEEEEcCcHhHHHHHHHHHHcCCceeeEEecCHHHHHH
Confidence 77899999999 6899999999999999985 6999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCC
Q 016178 226 AAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVD 303 (394)
Q Consensus 226 aa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D 303 (394)
|++||+.||||||||++||+ ++|++.+++++++++++|++|+||+||+||++|+++ ++|||
T Consensus 118 Aa~AGA~yvsP~vgR~~~~g-----------------~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad 180 (211)
T cd00956 118 AAKAGATYVSPFVGRIDDLG-----------------GDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGAD 180 (211)
T ss_pred HHHcCCCEEEEecChHhhcC-----------------CCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCC
Confidence 99999999999999999985 369999999999999999999999999999999998 79999
Q ss_pred eecccHHHHHHHHhCCCCCc
Q 016178 304 YIIAPLKVLQSLKESAISPD 323 (394)
Q Consensus 304 ~lTip~~vl~~L~~~~~~~~ 323 (394)
++|+|++++++|..++.+.+
T Consensus 181 ~vTv~~~vl~~l~~~~~t~~ 200 (211)
T cd00956 181 AITLPPDVLEQLLKHPLTDK 200 (211)
T ss_pred EEEeCHHHHHHHhcCccHHH
Confidence 99999999999999987643
No 22
>PRK12376 putative translaldolase; Provisional
Probab=100.00 E-value=2e-45 Score=350.24 Aligned_cols=191 Identities=22% Similarity=0.350 Sum_probs=163.2
Q ss_pred ceeccccchhhhhccCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHHhcCC
Q 016178 69 EIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMV 148 (394)
Q Consensus 69 ~ivaDt~d~~~i~~~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~eil~~v 148 (394)
.++.||+|+++|+++.+.+ .|.|+|+|| +|+++. |. +++..+.++|++.+
T Consensus 7 k~flDtAd~~eik~~~~~g------~i~GVTTNP-sll~k~-------g~----------------~~~~~~~~~i~~~~ 56 (236)
T PRK12376 7 KIFADGADLEEMLAAYKNP------LVKGFTTNP-SLMRKA-------GV----------------TDYKAFAKEVLAEI 56 (236)
T ss_pred EEEEecCCHHHHHHHHhCC------CeeEEECCH-HHHHhc-------CC----------------CCHHHHHHHHHHhc
Confidence 4999999999999986633 345555555 444431 11 23555666788888
Q ss_pred C-CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh----hHHHHHHHHHHcCceeeEecccCHHHH
Q 016178 149 P-GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW----QGIEASRLLESEGIQTHLTFVYSFAQA 223 (394)
Q Consensus 149 ~-G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~----eGi~A~~~L~~eGI~vN~TlVFS~~QA 223 (394)
+ |+||+|| ++.|+++|+++|++|.++ ++|++||||+|| +|++|+++|+++||+||+|+|||+.||
T Consensus 57 ~~~~vs~EV---~~~d~~~mv~eA~~l~~~-------~~nv~VKIP~T~~~G~~gl~Ai~~L~~~GI~vn~T~vfs~~Qa 126 (236)
T PRK12376 57 PDAPISFEV---FADDLETMEKEAEKIASL-------GENVYVKIPITNTKGESTIPLIKKLSADGVKLNVTAIFTIEQV 126 (236)
T ss_pred CCCcEEEEE---ecCCHHHHHHHHHHHHHh-------CCCeEEEECCcCccchhHHHHHHHHHHCCCeEEEeeecCHHHH
Confidence 5 7999999 899999999999999998 389999999998 789999999999999999999999999
Q ss_pred HHHHHc----CCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh-
Q 016178 224 AAAAQA----GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS- 298 (394)
Q Consensus 224 ~aaa~A----Ga~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~- 298 (394)
.+|++| |++||||||||++|.+ .+|+..++++.++|+.+ ++|+||+||+||++|+.+
T Consensus 127 ~~a~~A~ag~ga~yispfvgR~dd~g-----------------~D~~~~i~~i~~i~~~~-~~tkILaASiR~~~~v~~a 188 (236)
T PRK12376 127 KEVVDALTPGVPAIVSVFAGRIADTG-----------------VDPVPLMKEALAICHSK-PGVELLWASPREVYNIIQA 188 (236)
T ss_pred HHHHHHhcCCCCeEEEEecchhhhcC-----------------CCcHHHHHHHHHHHHhC-CCcEEEEEecCCHHHHHHH
Confidence 866665 5999999999999864 25899999999999886 899999999999999998
Q ss_pred -hhCCCeecccHHHHHHHHh
Q 016178 299 -LLGVDYIIAPLKVLQSLKE 317 (394)
Q Consensus 299 -laG~D~lTip~~vl~~L~~ 317 (394)
++|||++|+||+++++|..
T Consensus 189 ~~~Gad~vTvp~~v~~~l~~ 208 (236)
T PRK12376 189 DQLGCDIITVTPDVLKKLPL 208 (236)
T ss_pred HHcCCCEEEcCHHHHHHHHh
Confidence 7999999999999999986
No 23
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=100.00 E-value=1.6e-44 Score=343.72 Aligned_cols=187 Identities=19% Similarity=0.263 Sum_probs=159.0
Q ss_pred ceeccccchhhhhccCC----CCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHH
Q 016178 69 EIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (394)
Q Consensus 69 ~ivaDt~d~~~i~~~~p----~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~ei 144 (394)
.++.||+|+++|+++.+ .|.|||||++.+.... ++..+.+++
T Consensus 7 k~flDtAd~~ei~~~~~~g~i~GvTTNPsll~k~g~~----------------------------------~~~~~~~~i 52 (236)
T TIGR02134 7 KVFADGANLEEMVKFSTHPYVKGFTTNPSLMRKAGIV----------------------------------DYEAFAHEA 52 (236)
T ss_pred EEEEeCCCHHHHHHHHhCCCeeEEeCCHHHHHhcCCC----------------------------------CHHHHHHHH
Confidence 49999999999998755 4455666555543211 123333444
Q ss_pred hc-CCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChh-H---HHHHHHHHHcCceeeEecccC
Q 016178 145 AK-MVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ-G---IEASRLLESEGIQTHLTFVYS 219 (394)
Q Consensus 145 l~-~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~e-G---i~A~~~L~~eGI~vN~TlVFS 219 (394)
+. ..+|+||+|| ++.|.++|++||++|.++ ++||+||||+|++ | ++|+++|.++||+||+|+|||
T Consensus 53 ~~~~~~~~vs~EV---~~~d~~~m~~eA~~l~~~-------~~nv~VKIP~T~~~G~~~l~ai~~L~~~GI~vn~T~vfs 122 (236)
T TIGR02134 53 LAQITDLPISFEV---FADDLDEMEKEARYIASW-------GNNVNVKIPVTNTKGESTGPLIQKLSADGITLNVTALTT 122 (236)
T ss_pred HHHccCCcEEEEE---ecCCHHHHHHHHHHHHhc-------CCCeEEEECCcCcccchHHHHHHHHHHCCCcEEeehcCC
Confidence 22 3478999999 899999999999999888 4899999999997 7 999999999999999999999
Q ss_pred HHHHHHHHH---cC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhh
Q 016178 220 FAQAAAAAQ---AG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQD 295 (394)
Q Consensus 220 ~~QA~aaa~---AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~ 295 (394)
+.||..|++ +| ++||||||||++|.+ .+|+..++++.++|+.+ ++|+|||||+||++|
T Consensus 123 ~~Qa~~aa~A~~aG~a~yispfvgR~dd~g-----------------~D~~~~i~~i~~i~~~~-~~tkILaAS~R~~~~ 184 (236)
T TIGR02134 123 IEQVEKVCQSFTDGVPGIVSVFAGRIADTG-----------------VDPEPHMREALEIVAQK-PGVELLWASPRELFN 184 (236)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecchhhhcC-----------------CCcHHHHHHHHHHHHhC-CCcEEEEEccCCHHH
Confidence 999999776 79 799999999999964 25999999999999987 799999999999999
Q ss_pred hHh--hhCCCeecccHHHHHHHHh
Q 016178 296 LFS--LLGVDYIIAPLKVLQSLKE 317 (394)
Q Consensus 296 i~~--laG~D~lTip~~vl~~L~~ 317 (394)
+.+ ++|||++|+|++++++|..
T Consensus 185 v~~a~~~Gad~vTvp~~v~~~l~~ 208 (236)
T TIGR02134 185 IIQADRIGCDIITCAHDILAKLPL 208 (236)
T ss_pred HHHHHHcCCCEEECCHHHHHHHHh
Confidence 998 6999999999999999974
No 24
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=94.05 E-value=1.7 Score=42.25 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=31.3
Q ss_pred CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhh
Q 016178 209 GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (394)
Q Consensus 209 GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~ 245 (394)
..++.+--+=++.|...|+.+|+..+..-..=+..+.
T Consensus 171 ~tkILaAS~R~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T TIGR02134 171 GVELLWASPRELFNIIQADRIGCDIITCAHDILAKLP 207 (236)
T ss_pred CcEEEEEccCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 5778888888899999999999999988877777664
No 25
>PRK01362 putative translaldolase; Provisional
Probab=93.76 E-value=0.63 Score=44.42 Aligned_cols=50 Identities=20% Similarity=0.178 Sum_probs=37.8
Q ss_pred hHHHHHHHHH----HcC--ceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhh
Q 016178 197 QGIEASRLLE----SEG--IQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWAR 246 (394)
Q Consensus 197 eGi~A~~~L~----~eG--I~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~ 246 (394)
.|++.++++. ..| -++.+--+=+..|...++.+||.++..-..=+..+++
T Consensus 139 dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~ 194 (214)
T PRK01362 139 DGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQLFK 194 (214)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHHHHHHc
Confidence 4655554443 334 6778888889999999999999999888777777763
No 26
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=93.74 E-value=0.66 Score=45.57 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=87.2
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEe----------cCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHc
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI----------PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKI----------PaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~A 229 (394)
-+++.++-|+-|+--.+++..+|....| +||+ |-.-|-++|+++|.++|..|.--.-=.+.=|....++
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~-wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~ 157 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNN-FVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDI 157 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCC-eEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHc
Confidence 4566665555554444444333333233 6776 4445889999999999999988777777788888899
Q ss_pred CCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHH-HHhhcCChhhhHh--hhCCCeec
Q 016178 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL-MAAAVRNKQDLFS--LLGVDYII 306 (394)
Q Consensus 230 Ga~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~v-LaAS~R~~~~i~~--laG~D~lT 306 (394)
||..|=|.-+-|-. .-|+.+-..+.-+.+.. ++.| ..|.+.+..++.. .+|||-+-
T Consensus 158 Gc~aVMPlgsPIGS-------------------g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL 216 (267)
T CHL00162 158 GCATVMPLGSPIGS-------------------GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVL 216 (267)
T ss_pred CCeEEeeccCcccC-------------------CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 99999998776632 23665555554444432 3444 4889999999987 69999875
Q ss_pred ccH
Q 016178 307 APL 309 (394)
Q Consensus 307 ip~ 309 (394)
+.-
T Consensus 217 ~nS 219 (267)
T CHL00162 217 LNT 219 (267)
T ss_pred ecc
Confidence 533
No 27
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=93.40 E-value=1.5 Score=42.27 Aligned_cols=157 Identities=10% Similarity=0.022 Sum_probs=85.8
Q ss_pred ccccchhhhhccCC-CCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhc-ccChhhhhhhhhhhhHHHHHHHHhcCCC
Q 016178 72 PDTVVFDDFERFPP-TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCE-LENSELRLSCFFNKALVNVGGDLAKMVP 149 (394)
Q Consensus 72 aDt~d~~~i~~~~p-~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~-l~~~~~~~~~~~~~~~v~~g~eil~~v~ 149 (394)
+|..+++.+.++.+ .|.||||||+.+....+ |...+.+........+ +. .+.-..--..+++-++++.+.+.
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~---~~~~~~~i~~~i~~~~~vs---~ev~~~~~~~mi~eA~~l~~~~~ 81 (222)
T PRK12656 8 LNLEAIKKWHEILPLAGVTSNPSIAKKEGDID---FFERIREVREIIGDEASIH---VQVVAQDYEGILKDAHEIRRQCG 81 (222)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCC---HHHHHHHHHHHhCCCCcEE---EEEEECCHHHHHHHHHHHHHHhC
Confidence 56677777887766 78999999999874322 4444444332211000 00 00001111233444555554445
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC--------------------------hhHHHHHH
Q 016178 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST--------------------------WQGIEASR 203 (394)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT--------------------------~eGi~A~~ 203 (394)
..|-+-|.. +.+-++-++.|.+. || ++.+-.=-| ..|.+.++
T Consensus 82 ~nv~VKIP~-----T~~Gl~Ai~~L~~~----Gi---~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~ 149 (222)
T PRK12656 82 DDVYIKVPV-----TPAGLAAIKTLKAE----GY---HITATAIYTVFQGLLAIEAGADYLAPYYNRMENLNIDSNAVIG 149 (222)
T ss_pred CCEEEEeCC-----CHHHHHHHHHHHHC----CC---ceEEeeeCCHHHHHHHHHCCCCEEecccchhhhcCCCHHHHHH
Confidence 556666632 33344444444432 22 222211111 12333333
Q ss_pred H----HHHc--CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhh
Q 016178 204 L----LESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWAR 246 (394)
Q Consensus 204 ~----L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~ 246 (394)
+ +... .-++.+--+=++.|...|+++||..+..-..=+..+++
T Consensus 150 ~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp~~vl~~l~~ 198 (222)
T PRK12656 150 QLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAGPDVFEAAFA 198 (222)
T ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecCHHHHHHHhc
Confidence 3 2222 46777888889999999999999999988888887763
No 28
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=92.62 E-value=0.88 Score=43.40 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=84.6
Q ss_pred ccccchhhhhccCC-CCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHHhcCCCC
Q 016178 72 PDTVVFDDFERFPP-TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPG 150 (394)
Q Consensus 72 aDt~d~~~i~~~~p-~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~eil~~v~G 150 (394)
+|..+++.+.++.+ .|.||||+|+.+...++...+++..+- ..|.-. .+....--..+++-++++.+..+
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~--~~g~vs------~qv~~~~~~~mi~~a~~l~~~~~- 78 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEA--VEGPVS------AETISLDAEGMVEEAKELAKLAP- 78 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHh--cCCcEE------EEEeeCCHHHHHHHHHHHHHhCC-
Confidence 56677888888887 889999999998765443333332221 111100 00000011334445556666555
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEe-------------cCC-------------hhHHHHHHH
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI-------------PST-------------WQGIEASRL 204 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKI-------------PaT-------------~eGi~A~~~ 204 (394)
.+-+-|.. +.+=++-++.|.+. || ++.+-. .+. ..|++.+++
T Consensus 79 ~i~iKIP~-----T~~Gl~A~~~L~~~----Gi---~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~ 146 (213)
T TIGR00875 79 NIVVKIPM-----TSEGLKAVKILKKE----GI---KTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEE 146 (213)
T ss_pred CeEEEeCC-----CHHHHHHHHHHHHC----CC---ceeEEEecCHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHH
Confidence 35565532 22224444444432 22 111110 000 134444443
Q ss_pred HH----Hc--CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhh
Q 016178 205 LE----SE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (394)
Q Consensus 205 L~----~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~ 245 (394)
+. .. .-++.+--+=+..|...++.+|+.++..-..=+..+.
T Consensus 147 ~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~ 193 (213)
T TIGR00875 147 VKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQLF 193 (213)
T ss_pred HHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 33 23 4667777888999999999999999988887777775
No 29
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=92.58 E-value=1.9 Score=42.67 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=86.7
Q ss_pred CCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhH----HHHHHHHHHc-CceeeEecccCHHH
Q 016178 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG----IEASRLLESE-GIQTHLTFVYSFAQ 222 (394)
Q Consensus 148 v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eG----i~A~~~L~~e-GI~vN~TlVFS~~Q 222 (394)
.++++.+|+-+ ..|.+.+.+.++++.+. |+ +-+.|=+-+..+| .+.++++.+. ++++-+-.+.|.+.
T Consensus 114 ~~~~~~~ql~~--~~~~~~~~~~i~~~~~~----g~--~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~ 185 (299)
T cd02809 114 APGPRWFQLYV--PRDREITEDLLRRAEAA----GY--KALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPED 185 (299)
T ss_pred cCCCeEEEEee--cCCHHHHHHHHHHHHHc----CC--CEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHH
Confidence 34788888832 23555555444444332 22 2223322222111 3566777766 78888888899999
Q ss_pred HHHHHHcCCcEEEec--hhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHH-HhhcCChhhhHh-
Q 016178 223 AAAAAQAGASVIQIF--VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDLFS- 298 (394)
Q Consensus 223 A~aaa~AGa~~ISpF--VgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vL-aAS~R~~~~i~~- 298 (394)
|..|.++|+..|... -||..+|. .+....+.++.+.+. .+..|+ .-.+|+..++.+
T Consensus 186 a~~a~~~G~d~I~v~~~gG~~~~~g-----------------~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~d~~ka 245 (299)
T cd02809 186 ALRAVDAGADGIVVSNHGGRQLDGA-----------------PATIDALPEIVAAVG---GRIEVLLDGGIRRGTDVLKA 245 (299)
T ss_pred HHHHHHCCCCEEEEcCCCCCCCCCC-----------------cCHHHHHHHHHHHhc---CCCeEEEeCCCCCHHHHHHH
Confidence 999999999988774 33332221 134455555544332 234444 556788888887
Q ss_pred -hhCCCeecccHHHHHHHHh
Q 016178 299 -LLGVDYIIAPLKVLQSLKE 317 (394)
Q Consensus 299 -laG~D~lTip~~vl~~L~~ 317 (394)
.+|||.+.+.-.++..+..
T Consensus 246 l~lGAd~V~ig~~~l~~~~~ 265 (299)
T cd02809 246 LALGADAVLIGRPFLYGLAA 265 (299)
T ss_pred HHcCCCEEEEcHHHHHHHHh
Confidence 6999999988888877654
No 30
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=92.38 E-value=1.2 Score=42.83 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=36.6
Q ss_pred hHHHHHHHHH----Hc--CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhh
Q 016178 197 QGIEASRLLE----SE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWAR 246 (394)
Q Consensus 197 eGi~A~~~L~----~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~ 246 (394)
.|++.++++. .. ..++.+--+=+..|+..++.+|+.++..-..=+..+.+
T Consensus 141 dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~ 196 (220)
T PRK12655 141 DGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITLPLDVAQQMLN 196 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECCHHHHHHHHc
Confidence 4555554443 23 35555666666999999999999999999888888764
No 31
>PRK12376 putative translaldolase; Provisional
Probab=91.32 E-value=14 Score=35.97 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=32.9
Q ss_pred CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhh
Q 016178 209 GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWAR 246 (394)
Q Consensus 209 GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~ 246 (394)
+.++.+--+=++.|...|+.+||..+..-..=+..+++
T Consensus 171 ~tkILaASiR~~~~v~~a~~~Gad~vTvp~~v~~~l~~ 208 (236)
T PRK12376 171 GVELLWASPREVYNIIQADQLGCDIITVTPDVLKKLPL 208 (236)
T ss_pred CcEEEEEecCCHHHHHHHHHcCCCEEEcCHHHHHHHHh
Confidence 56788888889999999999999999988888888774
No 32
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.80 E-value=1.7 Score=42.56 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=79.8
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEec----------CChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHc
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIP----------STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIP----------aT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~A 229 (394)
-+++.++-|+-|+--.+++ ..=+||+= --.+-++|+++|.++|..|.--..=++..+.+.+++
T Consensus 71 G~~ta~eAv~~a~lare~~-------~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~ 143 (248)
T cd04728 71 GCRTAEEAVRTARLAREAL-------GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA 143 (248)
T ss_pred CCCCHHHHHHHHHHHHHHh-------CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc
Confidence 4556655444444444432 22367753 334779999999999999987788899999999999
Q ss_pred CCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeec
Q 016178 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYII 306 (394)
Q Consensus 230 Ga~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lT 306 (394)
||.+|-|.-.-|- ..-|+.+ .+..+.+++. .++.|| .|.+.+++++.. .+|||.+.
T Consensus 144 G~~~vmPlg~pIG-------------------sg~Gi~~-~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVl 202 (248)
T cd04728 144 GCAAVMPLGSPIG-------------------SGQGLLN-PYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (248)
T ss_pred CCCEeCCCCcCCC-------------------CCCCCCC-HHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 9999944322221 1124433 2222233332 234444 777889999977 69999887
Q ss_pred ccHHHH
Q 016178 307 APLKVL 312 (394)
Q Consensus 307 ip~~vl 312 (394)
+.-.+.
T Consensus 203 V~SAIt 208 (248)
T cd04728 203 LNTAIA 208 (248)
T ss_pred EChHhc
Confidence 765553
No 33
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=90.42 E-value=2.5 Score=41.23 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=87.5
Q ss_pred HHhcCCC-CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEe----------cCChhHHHHHHHHHHcCce
Q 016178 143 DLAKMVP-GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI----------PSTWQGIEASRLLESEGIQ 211 (394)
Q Consensus 143 eil~~v~-G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKI----------PaT~eGi~A~~~L~~eGI~ 211 (394)
.+++.++ -.+.+=-|-.-+++.++-|.-|+--.+++ ..=+||+ |-..|-++|+++|.++|..
T Consensus 53 ~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~-------~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 53 NILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAF-------GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV 125 (247)
T ss_dssp HCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTT-------S-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E
T ss_pred cHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE
Confidence 4556665 23444445446677766666555544443 3456886 5556889999999999999
Q ss_pred eeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcC
Q 016178 212 THLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVR 291 (394)
Q Consensus 212 vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R 291 (394)
|.--.-=.+.=+....++||..+=|.-+-|-. .-|+.+-..+..+.++.+. ..|+-|.+.
T Consensus 126 VlPY~~~D~v~akrL~d~GcaavMPlgsPIGS-------------------g~Gi~n~~~l~~i~~~~~v-PvIvDAGiG 185 (247)
T PF05690_consen 126 VLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGS-------------------GRGIQNPYNLRIIIERADV-PVIVDAGIG 185 (247)
T ss_dssp EEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT----------------------SSTHHHHHHHHHHGSS-SBEEES---
T ss_pred EeecCCCCHHHHHHHHHCCCCEEEeccccccc-------------------CcCCCCHHHHHHHHHhcCC-cEEEeCCCC
Confidence 98877777777788889999999998776632 2355555444444555433 345678888
Q ss_pred ChhhhHh--hhCCCeecccHHH
Q 016178 292 NKQDLFS--LLGVDYIIAPLKV 311 (394)
Q Consensus 292 ~~~~i~~--laG~D~lTip~~v 311 (394)
.+.|+.. .+|||.+-+.-.+
T Consensus 186 ~pSdaa~AMElG~daVLvNTAi 207 (247)
T PF05690_consen 186 TPSDAAQAMELGADAVLVNTAI 207 (247)
T ss_dssp SHHHHHHHHHTT-SEEEESHHH
T ss_pred CHHHHHHHHHcCCceeehhhHH
Confidence 8888876 6999998876655
No 34
>PRK00208 thiG thiazole synthase; Reviewed
Probab=90.26 E-value=1.7 Score=42.54 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=82.3
Q ss_pred cCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEe----------cCChhHHHHHHHHHHcCceeeEecccCHHHHHHH
Q 016178 157 DARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI----------PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAA 226 (394)
Q Consensus 157 dp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKI----------PaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aa 226 (394)
|-.-+++.++-|+-|+--.+++ ..=+||+ |-..+-++|+++|.++|..|.--..=++..+.+.
T Consensus 68 NTaG~~ta~eAv~~a~lare~~-------~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l 140 (250)
T PRK00208 68 NTAGCRTAEEAVRTARLAREAL-------GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRL 140 (250)
T ss_pred CCCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 3334566665555555444443 2236775 3344789999999999999987778899999999
Q ss_pred HHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchH-HHHhhcCChhhhHh--hhCCC
Q 016178 227 AQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK-LMAAAVRNKQDLFS--LLGVD 303 (394)
Q Consensus 227 a~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~-vLaAS~R~~~~i~~--laG~D 303 (394)
+++||.+|-|.-.-|- ..-|+.+ ....+.+++. .+.. +..|.+.+++++.+ .+|||
T Consensus 141 ~~~G~~~vmPlg~pIG-------------------sg~gi~~-~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAd 199 (250)
T PRK00208 141 EEAGCAAVMPLGAPIG-------------------SGLGLLN-PYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGAD 199 (250)
T ss_pred HHcCCCEeCCCCcCCC-------------------CCCCCCC-HHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 9999999944222221 1123322 2223333332 2333 45788889999987 69999
Q ss_pred eecccHHHH
Q 016178 304 YIIAPLKVL 312 (394)
Q Consensus 304 ~lTip~~vl 312 (394)
.+.+.-.+.
T Consensus 200 gVlV~SAIt 208 (250)
T PRK00208 200 AVLLNTAIA 208 (250)
T ss_pred EEEEChHhh
Confidence 887765553
No 35
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=90.21 E-value=4.2 Score=39.00 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=30.3
Q ss_pred ceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhh
Q 016178 210 IQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWAR 246 (394)
Q Consensus 210 I~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~ 246 (394)
.++.+--+=+..|...++.+|+.++..-..=+..+++
T Consensus 160 tkILaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~ 196 (220)
T PRK12653 160 AKVLAASFKTPRQALDCLLAGCESITLPLDVAQQMIS 196 (220)
T ss_pred cEEEEEecCCHHHHHHHHHcCCCEEECCHHHHHHHHc
Confidence 5556666667999999999999999998888888764
No 36
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=89.97 E-value=0.98 Score=44.81 Aligned_cols=136 Identities=13% Similarity=0.149 Sum_probs=95.8
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHc
Q 016178 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229 (394)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~A 229 (394)
|.-|+++|.. ..+.++.++.++++.+++++.|++-+-=+.-|+....+. ...-..+.+++||..+.+.
T Consensus 97 G~tsVm~d~s-~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~-----------~~~g~s~t~~eea~~f~~~ 164 (281)
T PRK06806 97 GFTSVMFDGS-HLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGS-----------EDIEMLLTSTTEAKRFAEE 164 (281)
T ss_pred CCCEEEEcCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCc-----------ccccceeCCHHHHHHHHHh
Confidence 8899999985 467899999999999999998886433334444333331 1111235799999999865
Q ss_pred -CCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeec
Q 016178 230 -GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYII 306 (394)
Q Consensus 230 -Ga~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lT 306 (394)
|++|+++=+|-+--.++ .. ..-|+...+++.+.. +.+.-..++|.-+.+++.+ ..|++-+-
T Consensus 165 tg~DyLAvaiG~~hg~~~---~~----------~~l~~~~L~~i~~~~---~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 165 TDVDALAVAIGNAHGMYN---GD----------PNLRFDRLQEINDVV---HIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred hCCCEEEEccCCCCCCCC---CC----------CccCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 99999998888866441 10 123677777776543 4566667888888888876 58888887
Q ss_pred ccHHHHH
Q 016178 307 APLKVLQ 313 (394)
Q Consensus 307 ip~~vl~ 313 (394)
+--.+..
T Consensus 229 v~T~i~~ 235 (281)
T PRK06806 229 VATATFN 235 (281)
T ss_pred EhHHHHH
Confidence 7666655
No 37
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=87.93 E-value=3.4 Score=38.13 Aligned_cols=110 Identities=19% Similarity=0.198 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEecCC---hhHHHHHHHHHHc--CceeeEec-ccCHH--HHHHHHHcCCcEEEechhh
Q 016178 169 RKVHDLLKLYSEIDVPPERLLFKIPST---WQGIEASRLLESE--GIQTHLTF-VYSFA--QAAAAAQAGASVIQIFVGR 240 (394)
Q Consensus 169 ~eA~~l~~l~~~~gi~~~nvlIKIPaT---~eGi~A~~~L~~e--GI~vN~Tl-VFS~~--QA~aaa~AGa~~ISpFVgR 240 (394)
++|.++.+.. +-|+ -.|||..+ ..|++.++.|.+. +..+-+.+ ++.+. |+..+.++|+.+|+.-.-.
T Consensus 12 ~~a~~~~~~l-~~~v----~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~ 86 (206)
T TIGR03128 12 EEALELAEKV-ADYV----DIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA 86 (206)
T ss_pred HHHHHHHHHc-ccCe----eEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC
Confidence 3555555543 2233 46999633 3789999999887 54555454 45655 8899999999988743210
Q ss_pred hhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHh--hcCC-hhhhHh--hhCCCeecccH
Q 016178 241 LRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAA--AVRN-KQDLFS--LLGVDYIIAPL 309 (394)
Q Consensus 241 idd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaA--S~R~-~~~i~~--laG~D~lTip~ 309 (394)
+-....++.++.+++|.+. +.+ +..+ .+++.. ..|+|++++.|
T Consensus 87 ------------------------~~~~~~~~i~~~~~~g~~~--~~~~~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 87 ------------------------DDATIKGAVKAAKKHGKEV--QVDLINVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred ------------------------CHHHHHHHHHHHHHcCCEE--EEEecCCCChHHHHHHHHHcCCCEEEEcC
Confidence 1123566677777776443 322 2222 233332 45999998865
No 38
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=86.93 E-value=3.9 Score=42.81 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=67.6
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC---C-hhHHHHHHHHHHc-C----ceee
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---T-WQGIEASRLLESE-G----IQTH 213 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa---T-~eGi~A~~~L~~e-G----I~vN 213 (394)
+.=..+.|-+|.-++| .++.+.-++-|++|.++ |+ +-|+||=-+ | .++.+-++.++++ + .+|+
T Consensus 136 k~G~h~q~~i~YT~sP--vHt~e~yv~~akel~~~----g~--DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH 207 (472)
T COG5016 136 KHGAHVQGTISYTTSP--VHTLEYYVELAKELLEM----GV--DSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTH 207 (472)
T ss_pred hcCceeEEEEEeccCC--cccHHHHHHHHHHHHHc----CC--CEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecc
Confidence 3333467889999998 48888889999988886 34 789999544 2 3677777888776 5 4667
Q ss_pred EecccCHHHHHHHHHcCCc----EEEechh
Q 016178 214 LTFVYSFAQAAAAAQAGAS----VIQIFVG 239 (394)
Q Consensus 214 ~TlVFS~~QA~aaa~AGa~----~ISpFVg 239 (394)
.|.=++..-+++|.+||++ .||||-|
T Consensus 208 ~TsG~a~m~ylkAvEAGvD~iDTAisp~S~ 237 (472)
T COG5016 208 ATSGMAEMTYLKAVEAGVDGIDTAISPLSG 237 (472)
T ss_pred cccchHHHHHHHHHHhCcchhhhhhccccC
Confidence 7888899999999999974 5677754
No 39
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=86.76 E-value=7.7 Score=37.83 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=66.9
Q ss_pred hhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChh-----H---------
Q 016178 133 FNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ-----G--------- 198 (394)
Q Consensus 133 ~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~e-----G--------- 198 (394)
-++++. .+.+.+..++-+|..| +++|++-|.++ +|..+-=+|-..+ |
T Consensus 51 ~d~Dv~----~L~~~~~~~lNlE~a~-----t~e~~~ia~~~----------kP~~vtLVPE~r~e~TTegGldv~~~~~ 111 (239)
T PF03740_consen 51 QDRDVR----RLRELVKTPLNLEMAP-----TEEMVDIALKV----------KPDQVTLVPEKREELTTEGGLDVAGNRD 111 (239)
T ss_dssp -HHHHH----HHHHH-SSEEEEEEES-----SHHHHHHHHHH------------SEEEEE--SGGGBSTTSSB-TCGGHH
T ss_pred CHHHHH----HHHHHcccCEEeccCC-----CHHHHHHHHhC----------CcCEEEECCCCCCCcCCCcCChhhcCHH
Confidence 345566 3444556689999977 68899877665 3555555776442 2
Q ss_pred --HHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhh
Q 016178 199 --IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (394)
Q Consensus 199 --i~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~ 245 (394)
-+++++|.+.||+|-+-.==.++|..+|.+.|+.+|=.+-|...+.+
T Consensus 112 ~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG~yA~a~ 160 (239)
T PF03740_consen 112 RLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKELGADRVELHTGPYANAF 160 (239)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEEEEETHHHHHHS
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHcCCCEEEEehhHhhhhc
Confidence 56889999999999999999999999999999999999999998865
No 40
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=82.84 E-value=16 Score=39.14 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEec--CChhHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEEEechh---
Q 016178 167 IIRKVHDLLKLYSEIDVPPERLLFKIP--STWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVG--- 239 (394)
Q Consensus 167 ~I~eA~~l~~l~~~~gi~~~nvlIKIP--aT~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVg--- 239 (394)
.++.++.|++. |+ +-|.|=.. -|..-++.+++|.+. ++.+-+=-|.|.+++..+.+||+.+|-.=+|
T Consensus 242 ~~~~~~~l~~a----g~--d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 242 DIERAAALIEA----GV--DVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHC----CC--CEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 36777777764 23 44555443 233346778888876 5666666699999999999999998854322
Q ss_pred ----hhh-hhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHH-hhcCChhhhHh--hhCCCeecccHHH
Q 016178 240 ----RLR-DWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKV 311 (394)
Q Consensus 240 ----Rid-d~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLa-AS~R~~~~i~~--laG~D~lTip~~v 311 (394)
|+- +| | -|-+..+.++.++.++++ ..+++ -.+++..++.. .+|+|.+.+.-.+
T Consensus 316 ~~~t~~~~~~----------------g-~p~~~ai~~~~~~~~~~~--v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~ 376 (495)
T PTZ00314 316 ICITQEVCAV----------------G-RPQASAVYHVARYARERG--VPCIADGGIKNSGDICKALALGADCVMLGSLL 376 (495)
T ss_pred ccccchhccC----------------C-CChHHHHHHHHHHHhhcC--CeEEecCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 221 11 1 245666677777777766 33443 36799999987 5999999877654
No 41
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=82.53 E-value=11 Score=39.93 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=79.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhhhh-cc--cChhhhhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHH
Q 016178 95 LLGICSLPDTIFRNAVDMALADSSCC-EL--ENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKV 171 (394)
Q Consensus 95 i~~~~~nP~ti~~~ai~~al~~~~~~-~l--~~~~~~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA 171 (394)
+.|...-|+.+.++.|+.++..|... .. ...+.. ..+..++.+++.-..+.+.++.+.+|+ ++.+..++-|
T Consensus 87 ~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~----n~~~~v~~ak~~G~~v~~~i~~t~~p~--~~~~~~~~~a 160 (448)
T PRK12331 87 LLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVR----NLETAVKATKKAGGHAQVAISYTTSPV--HTIDYFVKLA 160 (448)
T ss_pred ccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH----HHHHHHHHHHHcCCeEEEEEEeecCCC--CCHHHHHHHH
Confidence 35666666666777777777655411 00 011111 112234344333223446788888886 7888888888
Q ss_pred HHHHHHhhcCCCCCCcEEEEecC---Ch-hHHHHHHHHHHc-----CceeeEecccCHHHHHHHHHcCCcEEEechh
Q 016178 172 HDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLESE-----GIQTHLTFVYSFAQAAAAAQAGASVIQIFVG 239 (394)
Q Consensus 172 ~~l~~l~~~~gi~~~nvlIKIPa---T~-eGi~A~~~L~~e-----GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVg 239 (394)
+++.+. |+ ++|+||=.+ |+ +--+.++.|.++ ++|++-|.=..+.-+++|++||+.+|.-=++
T Consensus 161 ~~l~~~----Ga--d~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 231 (448)
T PRK12331 161 KEMQEM----GA--DSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAIS 231 (448)
T ss_pred HHHHHc----CC--CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeecc
Confidence 887665 44 678887332 22 223334444433 6778889999999999999999877654444
No 42
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=82.48 E-value=15 Score=35.71 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=71.1
Q ss_pred hhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh-----h-H--------
Q 016178 133 FNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----Q-G-------- 198 (394)
Q Consensus 133 ~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~-----e-G-------- 198 (394)
-++++. .+.+.+..++-+|..| +++|++-|.++ +|.-+-=+|-.+ | |
T Consensus 50 ~d~Dv~----~L~~~~~~~lNlE~a~-----t~em~~ia~~~----------kP~~vtLVPEkr~E~TTegGldv~~~~~ 110 (234)
T cd00003 50 QDRDVR----LLRELVRTELNLEMAP-----TEEMLEIALEV----------KPHQVTLVPEKREELTTEGGLDVAGQAE 110 (234)
T ss_pred CHHHHH----HHHHHcCCCEEeccCC-----CHHHHHHHHHC----------CCCEEEECCCCCCCccCCccchhhcCHH
Confidence 345565 3444455688899976 78888876654 345455577633 3 3
Q ss_pred --HHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhh
Q 016178 199 --IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (394)
Q Consensus 199 --i~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~ 245 (394)
-++++.|.+.||+|-+..==..+|..+|++.|+..|=.+-|...+.+
T Consensus 111 ~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~Ya~a~ 159 (234)
T cd00003 111 KLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTGPYANAY 159 (234)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCC
Confidence 35689999999999999999999999999999999999999987754
No 43
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=80.74 E-value=15 Score=37.89 Aligned_cols=134 Identities=13% Similarity=0.178 Sum_probs=85.2
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhH-HHHHHHHHHcCceeeEecccC---HHHHHHHHHcCCcEEE
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG-IEASRLLESEGIQTHLTFVYS---FAQAAAAAQAGASVIQ 235 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eG-i~A~~~L~~eGI~vN~TlVFS---~~QA~aaa~AGa~~IS 235 (394)
..++++..++-++.|.++ || +.|=+=+|+..+. .++++.+.+.|.++.++. ++ ......+.++|+..|-
T Consensus 21 ~~~s~e~k~~ia~~L~~~----GV--~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~-~~r~~~~di~~a~~~g~~~i~ 93 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEI----GV--DQIEAGFPAVSEDEKEAIKAIAKLGLNASILA-LNRAVKSDIDASIDCGVDAVH 93 (378)
T ss_pred CCCCHHHHHHHHHHHHHh----CC--CEEEEeCCCcChHHHHHHHHHHhcCCCeEEEE-EcccCHHHHHHHHhCCcCEEE
Confidence 567777777666666554 56 5666778876654 588889988887765443 34 5566777889999988
Q ss_pred echhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHH--HhhcCChhhhHh------hhCCCeecc
Q 016178 236 IFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM--AAAVRNKQDLFS------LLGVDYIIA 307 (394)
Q Consensus 236 pFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vL--aAS~R~~~~i~~------laG~D~lTi 307 (394)
.|++--+-+.+.+... ..+..+..+.++.++.++.|+...+- -++-.+.+.+.+ .+|+|.+.+
T Consensus 94 i~~~~Sd~h~~~~~~~---------s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 94 IFIATSDIHIKHKLKK---------TREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred EEEcCCHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 8876544433322221 11346788888888999888765432 222223333332 479888776
Q ss_pred cH
Q 016178 308 PL 309 (394)
Q Consensus 308 p~ 309 (394)
+.
T Consensus 165 ~D 166 (378)
T PRK11858 165 CD 166 (378)
T ss_pred ec
Confidence 54
No 44
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.73 E-value=7.6 Score=36.82 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC-ChhHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCc-EEEec
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGAS-VIQIF 237 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa-T~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~-~ISpF 237 (394)
.|.+..++-++.+++- |+ . +|-|+. |+..++++++|.++ ++.+=+=.|.+.+|+..|.+||+. ++||.
T Consensus 13 ~~~~~a~~ia~al~~g----Gi--~--~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~ 84 (201)
T PRK06015 13 DDVEHAVPLARALAAG----GL--P--AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG 84 (201)
T ss_pred CCHHHHHHHHHHHHHC----CC--C--EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC
Confidence 4566555655555553 45 2 344444 55789999999766 688888999999999999999985 67887
Q ss_pred hhh
Q 016178 238 VGR 240 (394)
Q Consensus 238 VgR 240 (394)
+++
T Consensus 85 ~~~ 87 (201)
T PRK06015 85 TTQ 87 (201)
T ss_pred CCH
Confidence 653
No 45
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=80.60 E-value=3 Score=38.39 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHH
Q 016178 197 QGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (394)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (394)
+-++++++...+..++-+ -+.+.+|+..|+++|+++| ++|. .....++++.+.+
T Consensus 68 ~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I-----~lD~--------------------~~~~~~~~~v~~l 121 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADII-----MLDN--------------------MSPEDLKEAVEEL 121 (169)
T ss_dssp HHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEE-----EEES---------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEE-----EecC--------------------cCHHHHHHHHHHH
Confidence 445555555544433322 4668999999999997766 2332 2357788888888
Q ss_pred HHcCCchHHHHhhcCChhhhHh--hhCCCeeccc
Q 016178 277 HKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (394)
Q Consensus 277 ~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip 308 (394)
+..+.+.++.+++.-|.+++.+ ..|+|++-+.
T Consensus 122 ~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 122 RELNPRVKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred hhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 8878888888888899999987 7999998654
No 46
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=80.17 E-value=16 Score=35.85 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=67.3
Q ss_pred cCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHH
Q 016178 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKA 272 (394)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~i 272 (394)
|-..|-++|+|.|.++|..|.--.-=.+--|..--++||..+=|.-+-|-. .-|+.+-..+
T Consensus 114 PD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGS-------------------g~G~~n~~~l 174 (262)
T COG2022 114 PDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGS-------------------GLGLQNPYNL 174 (262)
T ss_pred CChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccccccC-------------------CcCcCCHHHH
Confidence 666788999999999999886554444555555568899999887666622 2366655555
Q ss_pred HHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHH
Q 016178 273 YNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKV 311 (394)
Q Consensus 273 y~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~v 311 (394)
.-++.+.. --.|+=|.+-.+.+... .+|||.+-+.-.+
T Consensus 175 ~iiie~a~-VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 175 EIIIEEAD-VPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred HHHHHhCC-CCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 54555542 22345677777888876 6999988664443
No 47
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.07 E-value=9 Score=36.51 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEec-CChhHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCc-EEEe
Q 016178 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIP-STWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGAS-VIQI 236 (394)
Q Consensus 161 a~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIP-aT~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~-~ISp 236 (394)
..|.+..++-++.+++ .|+ . +|-|+ .|++|++++++|.++ ++.+=+-.|.+.+|+..|.+||+. ++||
T Consensus 23 ~~~~~~a~~i~~al~~----~Gi--~--~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 23 INKLEDAVPLAKALVA----GGL--P--VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred cCCHHHHHHHHHHHHH----cCC--C--EEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 3556655555555555 345 2 34444 566899999999876 688889999999999999999985 5677
Q ss_pred chhh
Q 016178 237 FVGR 240 (394)
Q Consensus 237 FVgR 240 (394)
.+++
T Consensus 95 ~~~~ 98 (212)
T PRK05718 95 GLTP 98 (212)
T ss_pred CCCH
Confidence 7655
No 48
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=79.96 E-value=22 Score=34.72 Aligned_cols=94 Identities=22% Similarity=0.318 Sum_probs=70.2
Q ss_pred hhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh-----h-H--------
Q 016178 133 FNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----Q-G-------- 198 (394)
Q Consensus 133 ~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~-----e-G-------- 198 (394)
-++++. .+.+.+..++-+|..| +++|++-|.++ +|.-+-=+|-.+ | |
T Consensus 50 ~d~Dv~----~l~~~~~~~lNlE~a~-----~~emi~ia~~v----------kP~~vtLVPEkr~ElTTegGldv~~~~~ 110 (237)
T TIGR00559 50 QDRDVY----DLKEALTTPFNIEMAP-----TEEMIRIAEEI----------KPEQVTLVPEARDEVTTEGGLDVARLKD 110 (237)
T ss_pred CHHHHH----HHHHHcCCCEEeccCC-----CHHHHHHHHHc----------CCCEEEECCCCCCCccCCcCchhhhCHH
Confidence 345566 4445555688999976 67888877655 344444477533 3 3
Q ss_pred --HHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhh
Q 016178 199 --IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (394)
Q Consensus 199 --i~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~ 245 (394)
-++++.|.+.||+|-+=.==..+|..+|.+.|+..|=.+.|...+.+
T Consensus 111 ~l~~~i~~l~~~gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG~YA~a~ 159 (237)
T TIGR00559 111 KLCELVKRFHAAGIEVSLFIDADKDQISAAAEVGADRIEIHTGPYANAY 159 (237)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCC
Confidence 35689999999999988888999999999999999999999987643
No 49
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=79.64 E-value=25 Score=34.34 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=70.6
Q ss_pred hhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh-----h-H--------
Q 016178 133 FNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----Q-G-------- 198 (394)
Q Consensus 133 ~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~-----e-G-------- 198 (394)
-++++. .+.+.+..++-+|..| +++|++-|+++ +|.-+-=+|-.+ + |
T Consensus 53 ~d~Dv~----~L~~~~~~~lNlE~a~-----~~em~~ia~~~----------kP~~vtLVPE~r~E~TTegGldv~~~~~ 113 (239)
T PRK05265 53 RDRDVR----LLRETLKTELNLEMAA-----TEEMLDIALEV----------KPHQVTLVPEKREELTTEGGLDVAGQFD 113 (239)
T ss_pred CHHHHH----HHHHhcCCCEEeccCC-----CHHHHHHHHHC----------CCCEEEECCCCCCCccCCccchhhcCHH
Confidence 345666 4444555688899976 67788877665 355555577633 2 3
Q ss_pred --HHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhh
Q 016178 199 --IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (394)
Q Consensus 199 --i~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~ 245 (394)
-+.++.|.+.||+|-+=.==.++|..+|.+.|+..|=.+.|...+.+
T Consensus 114 ~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG~yA~a~ 162 (239)
T PRK05265 114 KLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTGPYADAK 162 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCC
Confidence 34589999999999888888999999999999999999999987643
No 50
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=79.34 E-value=27 Score=31.91 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=64.0
Q ss_pred cCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHH
Q 016178 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKA 272 (394)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~i 272 (394)
|....-...++.+...|+.+-++ +-+.+++..+.+.|++||.. |.+..-..+ .+ . ....|+..++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~-~~t~~e~~~a~~~gaD~v~~--~~~~~~~~~-~~-------~--~~~~g~~~~~~~ 154 (212)
T PRK00043 88 GQDDLPVADARALLGPDAIIGLS-THTLEEAAAALAAGADYVGV--GPIFPTPTK-KD-------A--KAPQGLEGLREI 154 (212)
T ss_pred CcccCCHHHHHHHcCCCCEEEEe-CCCHHHHHHHhHcCCCEEEE--CCccCCCCC-CC-------C--CCCCCHHHHHHH
Confidence 44332345556665666665544 34889999999999999943 322211100 00 0 001257777776
Q ss_pred HHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 273 YNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 273 y~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
.+.++ ++.|++.+.-+.+++.+ .+|+|.+.+.-.+.
T Consensus 155 ~~~~~----~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~ 192 (212)
T PRK00043 155 RAAVG----DIPIVAIGGITPENAPEVLEAGADGVAVVSAIT 192 (212)
T ss_pred HHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhh
Confidence 55442 37788888888888876 58999998876664
No 51
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=79.31 E-value=37 Score=30.15 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHH
Q 016178 199 IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHK 278 (394)
Q Consensus 199 i~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~ 278 (394)
...++.+...|..+-++. .+.+++..+.+.|++||.. +.+..-..+ .+ .....|+..++++.+.
T Consensus 85 ~~~~~~~~~~~~~~g~~~-~t~~~~~~~~~~g~d~i~~--~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~--- 148 (196)
T cd00564 85 VAEARALLGPDLIIGVST-HSLEEALRAEELGADYVGF--GPVFPTPTK-PG---------AGPPLGLELLREIAEL--- 148 (196)
T ss_pred HHHHHHHcCCCCEEEeeC-CCHHHHHHHhhcCCCEEEE--CCccCCCCC-CC---------CCCCCCHHHHHHHHHh---
Confidence 344555555566665554 6889999999999998843 333221100 00 0012356666655443
Q ss_pred cCCchHHHHhhcCChhhhHh--hhCCCeecccHHHHH
Q 016178 279 YGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQ 313 (394)
Q Consensus 279 ~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl~ 313 (394)
.+..|++++.-+.+++.+ .+|+|.+.+...++.
T Consensus 149 --~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 149 --VEIPVVAIGGITPENAAEVLAAGADGVAVISAITG 183 (196)
T ss_pred --CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhc
Confidence 346778777777777765 589999988777653
No 52
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=79.16 E-value=14 Score=38.89 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcEEEEec--CChhHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEEEechhh
Q 016178 165 HGIIRKVHDLLKLYSEIDVPPERLLFKIP--STWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGR 240 (394)
Q Consensus 165 e~~I~eA~~l~~l~~~~gi~~~nvlIKIP--aT~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgR 240 (394)
+...+++..|++. |+ +-|.|=.. -+..-++.++.+.+. .+.+-+--|.+.++|..+.++|+..|-.=+|.
T Consensus 223 ~~~~~r~~~L~~a----G~--d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~ 296 (450)
T TIGR01302 223 EFDKERAEALVKA----GV--DVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGP 296 (450)
T ss_pred hhHHHHHHHHHHh----CC--CEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCC
Confidence 3456777777775 23 34555442 233457788888877 67777888999999999999999988543321
Q ss_pred --hhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHH-hhcCChhhhHh--hhCCCeecccHHH
Q 016178 241 --LRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKV 311 (394)
Q Consensus 241 --idd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLa-AS~R~~~~i~~--laG~D~lTip~~v 311 (394)
+... .. . ...| .|-+..+.++.++.++++ ..|++ ..+|+..++.. .+|+|.+.+.-.+
T Consensus 297 G~~~~t-~~--~-------~~~g-~p~~~~i~~~~~~~~~~~--vpviadGGi~~~~di~kAla~GA~~V~~G~~~ 359 (450)
T TIGR01302 297 GSICTT-RI--V-------AGVG-VPQITAVYDVAEYAAQSG--IPVIADGGIRYSGDIVKALAAGADAVMLGSLL 359 (450)
T ss_pred CcCCcc-ce--e-------cCCC-ccHHHHHHHHHHHHhhcC--CeEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 1110 00 0 0011 245566667766666655 33454 36999999987 5999999887654
No 53
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=78.18 E-value=39 Score=33.32 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=78.7
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEe-------cCChh-----HHHHHHHHHHc-CceeeEec
Q 016178 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI-------PSTWQ-----GIEASRLLESE-GIQTHLTF 216 (394)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKI-------PaT~e-----Gi~A~~~L~~e-GI~vN~Tl 216 (394)
|+..+=+-|...+|.+.+++-|++|.++. ..++.|= |-.|. |++.++++..+ |+.+ +|-
T Consensus 26 ~~~~~iaGPCsie~~~~~~~~A~~lk~~g-------~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~-~te 97 (266)
T PRK13398 26 EEKIIIAGPCAVESEEQMVKVAEKLKELG-------VHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPV-VTE 97 (266)
T ss_pred CCEEEEEeCCcCCCHHHHHHHHHHHHHcC-------CCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCE-EEe
Confidence 57778888988999999999999999963 3577776 66664 57777666655 9999 788
Q ss_pred ccCHHHHHHHHHcCCcEEEechhhhhhh--hhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCC
Q 016178 217 VYSFAQAAAAAQAGASVIQIFVGRLRDW--ARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGH 281 (394)
Q Consensus 217 VFS~~QA~aaa~AGa~~ISpFVgRidd~--~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~ 281 (394)
+|+..++..+.+. +.++..=-.-+.+. .+.. ......--+..|....+.-+..+.++++..|.
T Consensus 98 ~~d~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn 162 (266)
T PRK13398 98 VMDTRDVEEVADY-ADMLQIGSRNMQNFELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGN 162 (266)
T ss_pred eCChhhHHHHHHh-CCEEEECcccccCHHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCC
Confidence 9999999999876 54444333322221 1110 00000011234433356677777777776654
No 54
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=77.61 E-value=10 Score=35.58 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=68.3
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEe----------ccc-C
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLT----------FVY-S 219 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~T----------lVF-S 219 (394)
-||-|+- ..|.=...+.+.++.+.|.+.|. ..+.+ .+.+.+++++... ++++... +++ .
T Consensus 8 ~~~~~~~---~~~~~~~~~~~~~~a~a~~~~G~----~~~~~-~~~~~i~~i~~~~--~~Pil~~~~~d~~~~~~~~~~~ 77 (221)
T PRK01130 8 IVSCQAL---PGEPLHSPEIMAAMALAAVQGGA----VGIRA-NGVEDIKAIRAVV--DVPIIGIIKRDYPDSEVYITPT 77 (221)
T ss_pred EEEecCC---CCCCCCCHHHHHHHHHHHHHCCC----eEEEc-CCHHHHHHHHHhC--CCCEEEEEecCCCCCCceECCC
Confidence 4677763 23333333455556666666655 33444 3577787777654 5555211 111 3
Q ss_pred HHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh-
Q 016178 220 FAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS- 298 (394)
Q Consensus 220 ~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~- 298 (394)
.+|+..|.++|+.+|.+-..-... . .| ....++.+..+++ ....++ ....+.+++..
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~------p-------------~~-~~~~~~i~~~~~~-~~i~vi-~~v~t~ee~~~a 135 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPR------P-------------DG-ETLAELVKRIKEY-PGQLLM-ADCSTLEEGLAA 135 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCC------C-------------CC-CCHHHHHHHHHhC-CCCeEE-EeCCCHHHHHHH
Confidence 679999999999988885322110 0 00 1234445555552 222222 34556666654
Q ss_pred -hhCCCeecc
Q 016178 299 -LLGVDYIIA 307 (394)
Q Consensus 299 -laG~D~lTi 307 (394)
.+|+|++.+
T Consensus 136 ~~~G~d~i~~ 145 (221)
T PRK01130 136 QKLGFDFIGT 145 (221)
T ss_pred HHcCCCEEEc
Confidence 588998854
No 55
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=77.38 E-value=16 Score=37.23 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=79.7
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC----------ChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHc
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS----------TWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa----------T~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~A 229 (394)
-+++.++-|+- .++.++.+ ..=+||+=. ..+-++|+++|.++|..|..-..=++..+.+++++
T Consensus 145 g~~ta~eAv~~----a~lare~~---~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 145 GCYTAEEAVRT----LRLAREAG---GWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA 217 (326)
T ss_pred CCCCHHHHHHH----HHHHHHhc---CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 45555544444 44444332 122777643 34779999999999999999999999999999999
Q ss_pred CCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeec
Q 016178 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYII 306 (394)
Q Consensus 230 Ga~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lT 306 (394)
||..+=|.-.-|= ..-|+.+-..+....+. .++.|| .|.+.+..++.. .+|||-+-
T Consensus 218 g~~avmPl~~pIG-------------------sg~gv~~p~~i~~~~e~--~~vpVivdAGIg~~sda~~AmelGadgVL 276 (326)
T PRK11840 218 GAVAVMPLGAPIG-------------------SGLGIQNPYTIRLIVEG--ATVPVLVDAGVGTASDAAVAMELGCDGVL 276 (326)
T ss_pred CCEEEeecccccc-------------------CCCCCCCHHHHHHHHHc--CCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 9976667544442 11233222222222222 345444 889999999987 69999875
Q ss_pred ccHHH
Q 016178 307 APLKV 311 (394)
Q Consensus 307 ip~~v 311 (394)
+.-.+
T Consensus 277 ~nSaI 281 (326)
T PRK11840 277 MNTAI 281 (326)
T ss_pred Eccee
Confidence 54333
No 56
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.36 E-value=11 Score=36.28 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC-ChhHHHHHHHHHH----c--CceeeEecccCHHHHHHHHHcCCc-E
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLES----E--GIQTHLTFVYSFAQAAAAAQAGAS-V 233 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa-T~eGi~A~~~L~~----e--GI~vN~TlVFS~~QA~aaa~AGa~-~ 233 (394)
.|.+..++-++.+++ .|+. +|-|+- |+.++++++.|.+ + ++.+=+-.|.+.+|+.+|.++|+. +
T Consensus 24 ~~~~~a~~~~~al~~----gGi~----~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 24 ADVEVAKKVIKACYD----GGAR----VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI 95 (222)
T ss_pred CCHHHHHHHHHHHHH----CCCC----EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE
Confidence 466655555555555 3452 455554 4478888888852 2 488889999999999999999984 6
Q ss_pred EEechhh
Q 016178 234 IQIFVGR 240 (394)
Q Consensus 234 ISpFVgR 240 (394)
+||.+++
T Consensus 96 VsP~~~~ 102 (222)
T PRK07114 96 VTPLFNP 102 (222)
T ss_pred ECCCCCH
Confidence 7887654
No 57
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.34 E-value=4.7 Score=39.92 Aligned_cols=85 Identities=16% Similarity=0.096 Sum_probs=59.1
Q ss_pred HHHHHHHHHc-C--ceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHH
Q 016178 199 IEASRLLESE-G--IQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNY 275 (394)
Q Consensus 199 i~A~~~L~~e-G--I~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~ 275 (394)
-++++++.+. + .++ ..-+=+++|+..|+++|+++|. +| +.....++++.++
T Consensus 169 ~~~v~~~k~~~p~~~~I-~VEv~tleea~~A~~~GaDiI~-----LD--------------------n~~~e~l~~~v~~ 222 (273)
T PRK05848 169 KEFIQHARKNIPFTAKI-EIECESLEEAKNAMNAGADIVM-----CD--------------------NMSVEEIKEVVAY 222 (273)
T ss_pred HHHHHHHHHhCCCCceE-EEEeCCHHHHHHHHHcCCCEEE-----EC--------------------CCCHHHHHHHHHH
Confidence 3455666554 2 334 4466799999999999999887 22 1356778888887
Q ss_pred HHHcCCchHHHHhhcCChhhhHh--hhCCCeecccH
Q 016178 276 IHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (394)
Q Consensus 276 ~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~ 309 (394)
.+....+.++.++..-+.+++.+ .+|+|++.+.-
T Consensus 223 ~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 223 RNANYPHVLLEASGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred hhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 65433455566665668899877 79999997664
No 58
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=76.80 E-value=36 Score=34.38 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=82.1
Q ss_pred HHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEec-cc
Q 016178 141 GGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VY 218 (394)
Q Consensus 141 g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-VF 218 (394)
.+.+.+.+...+.+=||++-+.+.+..++-++++.. +| -.+|-=|.....+...++|.+. +|++-+.- ++
T Consensus 176 v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~----~~----i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~ 247 (355)
T cd03321 176 VRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQ----EG----LTWIEEPTLQHDYEGHARIASALRTPVQMGENWL 247 (355)
T ss_pred HHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHc----CC----CCEEECCCCCcCHHHHHHHHHhcCCCEEEcCCCc
Confidence 334555554568888899888888766666665543 22 2577878877777777788776 78877664 57
Q ss_pred CHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 219 SFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 219 S~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
++.+.....+.| +.++.|=+.++ -|+.-++++.++.+.+|.+.
T Consensus 248 ~~~~~~~~i~~~~~d~i~~~~~~~----------------------GGit~~~~ia~~A~~~gi~~ 291 (355)
T cd03321 248 GPEEMFKALSAGACDLVMPDLMKI----------------------GGVTGWLRASALAEQAGIPM 291 (355)
T ss_pred CHHHHHHHHHhCCCCeEecCHhhh----------------------CCHHHHHHHHHHHHHcCCee
Confidence 899998888775 67877776664 17888999999999888664
No 59
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=76.40 E-value=52 Score=31.64 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=77.5
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEec-ccC
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VYS 219 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-VFS 219 (394)
+.+.+.++..+.+-||++-+.+.+..++-++.+.. .|+ .+|--|....-+..+++|.+. +|++-+.- +++
T Consensus 120 ~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~----~~i----~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~~ 191 (265)
T cd03315 120 AALREAVGDDAELRVDANRGWTPKQAIRALRALED----LGL----DYVEQPLPADDLEGRAALARATDTPIMADESAFT 191 (265)
T ss_pred HHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHh----cCC----CEEECCCCcccHHHHHHHHhhCCCCEEECCCCCC
Confidence 34555555456778888877887665555555543 222 367888876667777777766 77765554 789
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 220 ~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
+.++....+.| +.++.|=+.++ -|+.-++++.++.+.+|.++
T Consensus 192 ~~~~~~~i~~~~~d~v~~k~~~~----------------------GGi~~~~~~~~~A~~~gi~~ 234 (265)
T cd03315 192 PHDAFRELALGAADAVNIKTAKT----------------------GGLTKAQRVLAVAEALGLPV 234 (265)
T ss_pred HHHHHHHHHhCCCCEEEEecccc----------------------cCHHHHHHHHHHHHHcCCcE
Confidence 99998888765 67777765554 27888888888888887655
No 60
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=76.32 E-value=20 Score=35.52 Aligned_cols=141 Identities=10% Similarity=0.078 Sum_probs=95.3
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHH
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQ 228 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~ 228 (394)
.|+=|+++|.. ..+.++.++.++++.++++..|+ .|-..|-... | ...++.-+...+-+++||..+.+
T Consensus 96 ~Gf~sVmid~s-~l~~~eni~~t~~v~~~a~~~gv---~Ve~ElG~~g-g-------~ed~~~g~~~~~t~~eea~~f~~ 163 (282)
T TIGR01859 96 AGFSSVMIDGS-HLPFEENLALTKKVVEIAHAKGV---SVEAELGTLG-G-------IEDGVDEKEAELADPDEAEQFVK 163 (282)
T ss_pred cCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHcCC---EEEEeeCCCc-C-------ccccccccccccCCHHHHHHHHH
Confidence 37889999985 46889999999999999998887 3666664321 2 11111111233559999999997
Q ss_pred -cCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCee
Q 016178 229 -AGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYI 305 (394)
Q Consensus 229 -AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~l 305 (394)
.|++|+++=+|-+.-.+++. ..-++...++|.+.+ +.+....+.|.-+.+++.. .+|++-+
T Consensus 164 ~tgvD~Lavs~Gt~hg~~~~~-------------~~l~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 164 ETGVDYLAAAIGTSHGKYKGE-------------PGLDFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLGIAKI 227 (282)
T ss_pred HHCcCEEeeccCccccccCCC-------------CccCHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 79999999888875433221 013566666665543 4566666888888888765 5788888
Q ss_pred cccHHHHHHHHh
Q 016178 306 IAPLKVLQSLKE 317 (394)
Q Consensus 306 Tip~~vl~~L~~ 317 (394)
-+.-++...+..
T Consensus 228 Nv~T~l~~a~~~ 239 (282)
T TIGR01859 228 NIDTDCRIAFTA 239 (282)
T ss_pred EECcHHHHHHHH
Confidence 777776555433
No 61
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=75.75 E-value=15 Score=34.91 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEec-CChhHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCc-EEEec
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIP-STWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGAS-VIQIF 237 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIP-aT~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~-~ISpF 237 (394)
.|.+..++-++.+++- |+ . +|-|+ -|+..++++++|.++ ++.+=+=.|.+.+|+..|.+||+. ++||.
T Consensus 17 ~~~e~a~~~~~al~~~----Gi--~--~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 17 DDVDDALPLAKALIEG----GL--R--VLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred CCHHHHHHHHHHHHHc----CC--C--EEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCC
Confidence 4666666666666554 44 2 44555 456789999999876 588889999999999999999986 45665
Q ss_pred h
Q 016178 238 V 238 (394)
Q Consensus 238 V 238 (394)
.
T Consensus 89 ~ 89 (204)
T TIGR01182 89 L 89 (204)
T ss_pred C
Confidence 4
No 62
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=75.53 E-value=31 Score=37.95 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=81.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhh-----hhcccChhhhhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHH
Q 016178 95 LLGICSLPDTIFRNAVDMALADSS-----CCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIR 169 (394)
Q Consensus 95 i~~~~~nP~ti~~~ai~~al~~~~-----~~~l~~~~~~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~ 169 (394)
+.|...-|+.+.+..++.+...|. +..+ .+++ ..+...+..++.=..+.|.|++-.+| -++.+..++
T Consensus 87 ~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~l--nd~~----n~~~~i~~~k~~G~~~~~~i~yt~sp--~~t~e~~~~ 158 (596)
T PRK14042 87 LLGYRNYADDVVRAFVKLAVNNGVDVFRVFDAL--NDAR----NLKVAIDAIKSHKKHAQGAICYTTSP--VHTLDNFLE 158 (596)
T ss_pred ccccccCChHHHHHHHHHHHHcCCCEEEEcccC--cchH----HHHHHHHHHHHcCCEEEEEEEecCCC--CCCHHHHHH
Confidence 466667776677777777776654 1111 1111 11223333444333456788888888 478888888
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEecC---Ch-hHHHHHHHHHHc-----CceeeEecccCHHHHHHHHHcCCcEEEech
Q 016178 170 KVHDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLESE-----GIQTHLTFVYSFAQAAAAAQAGASVIQIFV 238 (394)
Q Consensus 170 eA~~l~~l~~~~gi~~~nvlIKIPa---T~-eGi~A~~~L~~e-----GI~vN~TlVFS~~QA~aaa~AGa~~ISpFV 238 (394)
.|+++.++ |+ +.|+||=.+ |+ +--+-++.|.++ ++|++-|+=.+..-+++|++||+.+|--=+
T Consensus 159 ~ak~l~~~----Ga--d~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai 230 (596)
T PRK14042 159 LGKKLAEM----GC--DSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAI 230 (596)
T ss_pred HHHHHHHc----CC--CEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEecc
Confidence 88888775 34 678888443 33 223333444332 778888888999999999999987654333
No 63
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.36 E-value=14 Score=35.22 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-----CceeeEecccCHHHHHHHHHcCCc-EEE
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-----GIQTHLTFVYSFAQAAAAAQAGAS-VIQ 235 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-----GI~vN~TlVFS~~QA~aaa~AGa~-~IS 235 (394)
.|.+..+.-++.|++ .|+ ..+=|-.= |+.++++++.|.++ ++.+=+=.|.+.+|+..|.++|+. ++|
T Consensus 22 ~~~~~a~~~~~al~~----~Gi--~~iEit~~-~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs 94 (213)
T PRK06552 22 ESKEEALKISLAVIK----GGI--KAIEVTYT-NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS 94 (213)
T ss_pred CCHHHHHHHHHHHHH----CCC--CEEEEECC-CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC
Confidence 456555555555554 345 33333332 56789999999764 388889999999999999999975 678
Q ss_pred echhh
Q 016178 236 IFVGR 240 (394)
Q Consensus 236 pFVgR 240 (394)
|-++.
T Consensus 95 P~~~~ 99 (213)
T PRK06552 95 PSFNR 99 (213)
T ss_pred CCCCH
Confidence 86543
No 64
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=74.67 E-value=5.4 Score=36.73 Aligned_cols=95 Identities=12% Similarity=0.052 Sum_probs=63.3
Q ss_pred ecCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHH
Q 016178 192 IPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (394)
Q Consensus 192 IPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (394)
.|.+..-+ ++.....|+.+-. -+.|++|+..|.++|++||..|=. . ..|...++.
T Consensus 82 ~p~~~~~~--~~~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~----------~------------~~g~~~~~~ 136 (190)
T cd00452 82 SPGLDPEV--VKAANRAGIPLLP-GVATPTEIMQALELGADIVKLFPA----------E------------AVGPAYIKA 136 (190)
T ss_pred cCCCCHHH--HHHHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC----------c------------ccCHHHHHH
Confidence 67655433 3333334777654 566999999999999999998620 0 014554544
Q ss_pred HHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHHHHH
Q 016178 272 AYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315 (394)
Q Consensus 272 iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl~~L 315 (394)
+. ..-.+..+++...-+.+++.+ .+|+|.+.+...+.+++
T Consensus 137 l~----~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~~~ 178 (190)
T cd00452 137 LK----GPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPKDA 178 (190)
T ss_pred HH----hhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcchhh
Confidence 43 222246788888889999977 68999998887776443
No 65
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=74.09 E-value=16 Score=34.53 Aligned_cols=70 Identities=23% Similarity=0.204 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC-ChhHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCc-EEEec
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGAS-VIQIF 237 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa-T~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~-~ISpF 237 (394)
.|.+..++-++.|++- |+ . +|-|+. |+.++++++.+.++ ++.+=+=.|.+.+|+..|.+||+. ++||-
T Consensus 17 ~~~~~a~~~~~al~~g----Gi--~--~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEG----GI--R--AIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp SSGGGHHHHHHHHHHT----T------EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS
T ss_pred CCHHHHHHHHHHHHHC----CC--C--EEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC
Confidence 4555555555555553 34 2 344444 45678888877765 899999999999999999999975 67886
Q ss_pred hh
Q 016178 238 VG 239 (394)
Q Consensus 238 Vg 239 (394)
.+
T Consensus 89 ~~ 90 (196)
T PF01081_consen 89 FD 90 (196)
T ss_dssp --
T ss_pred CC
Confidence 54
No 66
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=73.82 E-value=24 Score=36.17 Aligned_cols=134 Identities=11% Similarity=0.057 Sum_probs=74.8
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEE-------ecCChhHHHHHHHHHH-cCceeeEecccCHHHHHHHHHcCC
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK-------IPSTWQGIEASRLLES-EGIQTHLTFVYSFAQAAAAAQAGA 231 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIK-------IPaT~eGi~A~~~L~~-eGI~vN~TlVFS~~QA~aaa~AGa 231 (394)
..+.+++-++-++.|.++ || +.|=+= +|...+--++++.+.+ .+..+. .++-..+....|.++|+
T Consensus 63 ~~~s~e~Ki~ia~~L~~~----GV--~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~-~l~~n~~die~A~~~g~ 135 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSS----GL--PVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFP-VLTPNLKGFEAAIAAGA 135 (347)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEECCCcCcccccccccHHHHHHHHHhccCCcee-EEcCCHHHHHHHHHcCc
Confidence 456676666666666554 33 333333 3333332333333333 233332 22347888888999999
Q ss_pred cEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHH-HH-------hhcCChhhhHh-----
Q 016178 232 SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL-MA-------AAVRNKQDLFS----- 298 (394)
Q Consensus 232 ~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~v-La-------AS~R~~~~i~~----- 298 (394)
..|..|++==+-+.+++... .....+..++++.++.+++|.+..+ +. ++--+++.+.+
T Consensus 136 ~~v~i~~s~Sd~h~~~n~~~---------t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~ 206 (347)
T PLN02746 136 KEVAVFASASESFSKSNINC---------SIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKEL 206 (347)
T ss_pred CEEEEEEecCHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHH
Confidence 99999875444444333221 1124678888999999999876531 11 12223444432
Q ss_pred -hhCCCeecccH
Q 016178 299 -LLGVDYIIAPL 309 (394)
Q Consensus 299 -laG~D~lTip~ 309 (394)
.+|+|.|.++.
T Consensus 207 ~~~Gad~I~l~D 218 (347)
T PLN02746 207 YDMGCYEISLGD 218 (347)
T ss_pred HHcCCCEEEecC
Confidence 58999886643
No 67
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=73.54 E-value=28 Score=37.17 Aligned_cols=123 Identities=16% Similarity=0.110 Sum_probs=74.5
Q ss_pred hcCChHHHHHHHHHHHHhhh-----hhcccChhhhhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHH
Q 016178 99 CSLPDTIFRNAVDMALADSS-----CCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHD 173 (394)
Q Consensus 99 ~~nP~ti~~~ai~~al~~~~-----~~~l~~~~~~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~ 173 (394)
..-|+.+.+..++.+...|. ...+ | +.+ ..+..++..++.=..+.+.++.+.+|. ++.+-.++.|++
T Consensus 100 ~~ypddvv~~fv~~a~~~Gidi~Rifd~l-n-d~~----n~~~ai~~ak~~G~~~~~~i~yt~sp~--~t~~y~~~~a~~ 171 (468)
T PRK12581 100 RHYADDIVDKFISLSAQNGIDVFRIFDAL-N-DPR----NIQQALRAVKKTGKEAQLCIAYTTSPV--HTLNYYLSLVKE 171 (468)
T ss_pred cCCcchHHHHHHHHHHHCCCCEEEEcccC-C-CHH----HHHHHHHHHHHcCCEEEEEEEEEeCCc--CcHHHHHHHHHH
Confidence 33455667777777766554 1111 1 111 112233333332223457889999985 677778888888
Q ss_pred HHHHhhcCCCCCCcEEEEecC---Ch----hHHHHHHHHHH--cCceeeEecccCHHHHHHHHHcCCcEEE
Q 016178 174 LLKLYSEIDVPPERLLFKIPS---TW----QGIEASRLLES--EGIQTHLTFVYSFAQAAAAAQAGASVIQ 235 (394)
Q Consensus 174 l~~l~~~~gi~~~nvlIKIPa---T~----eGi~A~~~L~~--eGI~vN~TlVFS~~QA~aaa~AGa~~IS 235 (394)
+.++ |+ +.|+||=.+ |+ +=++++++... -|+|++-|+=.+..-+++|++||+.+|-
T Consensus 172 l~~~----Ga--d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD 236 (468)
T PRK12581 172 LVEM----GA--DSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRID 236 (468)
T ss_pred HHHc----CC--CEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEE
Confidence 7764 44 678887443 22 22444444211 2788888999999999999999986553
No 68
>PLN02535 glycolate oxidase
Probab=73.25 E-value=11 Score=38.90 Aligned_cols=106 Identities=20% Similarity=0.278 Sum_probs=74.7
Q ss_pred cCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCcccchhhccCCCchHHHHH
Q 016178 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (394)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISp--FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (394)
+.||+=|+.++... +.++-+--|.+.+.|..|.++|++.|.. .-||..| .++..+.
T Consensus 209 ~~tW~~i~~lr~~~--~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d--------------------~~~~t~~ 266 (364)
T PLN02535 209 SLSWKDIEWLRSIT--NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLD--------------------YSPATIS 266 (364)
T ss_pred CCCHHHHHHHHhcc--CCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCC--------------------CChHHHH
Confidence 46998888877743 5788888899999999999999887633 3344322 2344444
Q ss_pred HHHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHHHHHHhCCC
Q 016178 271 KAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (394)
Q Consensus 271 ~iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~~~ 320 (394)
.+.++.+..+.+..|+ .-.+|+..+++. .+|+|.+.+.-.+|..+...+.
T Consensus 267 ~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 267 VLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 4444444433334444 667899999987 6999999999888887765443
No 69
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=72.55 E-value=19 Score=34.20 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=82.1
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC-------hhHHHHHHHHHHcCceeeE-ecccC-HHHHHHHHHcC
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST-------WQGIEASRLLESEGIQTHL-TFVYS-FAQAAAAAQAG 230 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT-------~eGi~A~~~L~~eGI~vN~-TlVFS-~~QA~aaa~AG 230 (394)
...+++..++-++.|.++ || +.|-|=-|.. ....+.++.+.+.+-++.+ .++-+ .+.+..+.++|
T Consensus 14 ~~~s~e~~~~i~~~L~~~----GV--~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g 87 (265)
T cd03174 14 ATFSTEDKLEIAEALDEA----GV--DSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG 87 (265)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC
Confidence 345676666666666554 34 3344444433 4667888888887733333 23333 77788888999
Q ss_pred CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHH-hhc---CChhhhHh------hh
Q 016178 231 ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAV---RNKQDLFS------LL 300 (394)
Q Consensus 231 a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLa-AS~---R~~~~i~~------la 300 (394)
...|..++.--+-+-..+.. .+.+--+..+.+..++.+++|.+..+-. ..+ .+.+++.+ .+
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~---------~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLN---------KSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA 158 (265)
T ss_pred cCEEEEEEecCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 99888888655433222111 1112246778888888899888765544 233 44554432 58
Q ss_pred CCCeecccHH
Q 016178 301 GVDYIIAPLK 310 (394)
Q Consensus 301 G~D~lTip~~ 310 (394)
|+|.+.+...
T Consensus 159 g~~~i~l~Dt 168 (265)
T cd03174 159 GADEISLKDT 168 (265)
T ss_pred CCCEEEechh
Confidence 9998877544
No 70
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=71.75 E-value=23 Score=34.27 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=79.4
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhH-HHHHHHHHHcCceeeEe-cc-cCHHHHHHHHHcCCcEEEe
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG-IEASRLLESEGIQTHLT-FV-YSFAQAAAAAQAGASVIQI 236 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eG-i~A~~~L~~eGI~vN~T-lV-FS~~QA~aaa~AGa~~ISp 236 (394)
+.++++..++-++.|.+ .|| +.|-+=+|...+. .+.++.|.+.+-++.+. ++ ...+....+.++|...|-.
T Consensus 15 ~~~~~~~k~~i~~~L~~----~Gv--~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i 88 (259)
T cd07939 15 VAFSREEKLAIARALDE----AGV--DEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHI 88 (259)
T ss_pred CCCCHHHHHHHHHHHHH----cCC--CEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEE
Confidence 45667666655555544 466 5666667866433 46777777754333322 22 4577777888999998888
Q ss_pred chhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchH--HHHhhcCChhhhHh------hhCCCeeccc
Q 016178 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK--LMAAAVRNKQDLFS------LLGVDYIIAP 308 (394)
Q Consensus 237 FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~--vLaAS~R~~~~i~~------laG~D~lTip 308 (394)
|++--+-+..++... ..+..+..++++.++.++.|+... .+-++--+++.+.+ .+|+|.+.++
T Consensus 89 ~~~~s~~~~~~~~~~---------~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 89 SIPVSDIHLAHKLGK---------DRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred EEecCHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 875443332222221 112467888889999999887543 22222233444432 4788887765
Q ss_pred H
Q 016178 309 L 309 (394)
Q Consensus 309 ~ 309 (394)
.
T Consensus 160 D 160 (259)
T cd07939 160 D 160 (259)
T ss_pred C
Confidence 4
No 71
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=71.17 E-value=29 Score=38.08 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=78.6
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhhh-cc--cChhhhhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHH
Q 016178 96 LGICSLPDTIFRNAVDMALADSSCC-EL--ENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVH 172 (394)
Q Consensus 96 ~~~~~nP~ti~~~ai~~al~~~~~~-~l--~~~~~~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~ 172 (394)
.|...-|+.+.+..++.++..|... .+ ...+.+ ..+..++.+++.-..+.+.++...+|+ +|.+..++-++
T Consensus 83 ~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~----n~~~~i~~ak~~G~~v~~~i~~t~~p~--~~~~~~~~~~~ 156 (582)
T TIGR01108 83 LGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPR----NLQAAIQAAKKHGAHAQGTISYTTSPV--HTLETYLDLAE 156 (582)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH----HHHHHHHHHHHcCCEEEEEEEeccCCC--CCHHHHHHHHH
Confidence 5565666666777777776655411 00 001111 112333333333223445566656664 67788888888
Q ss_pred HHHHHhhcCCCCCCcEEEEecC---Ch-hHHHHHHHHHH-----cCceeeEecccCHHHHHHHHHcCCcEEEechhhh
Q 016178 173 DLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLES-----EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 173 ~l~~l~~~~gi~~~nvlIKIPa---T~-eGi~A~~~L~~-----eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
++.++ |+ +.|+||=-+ |+ +--+.++.|.+ -|+|++-|.=..+.-+++|++||+.+|.-=++-+
T Consensus 157 ~~~~~----Ga--d~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~Gl 228 (582)
T TIGR01108 157 ELLEM----GV--DSICIKDMAGILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSM 228 (582)
T ss_pred HHHHc----CC--CEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccc
Confidence 77765 34 567776322 22 22333344433 3799999999999999999999998776555443
No 72
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=70.09 E-value=36 Score=36.64 Aligned_cols=135 Identities=15% Similarity=0.182 Sum_probs=80.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhhhh-cc--cChhhhhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHH
Q 016178 95 LLGICSLPDTIFRNAVDMALADSSCC-EL--ENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKV 171 (394)
Q Consensus 95 i~~~~~nP~ti~~~ai~~al~~~~~~-~l--~~~~~~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA 171 (394)
+.|...-|+.+.+..|+.+...|... .. ...|++ ..+..++..++.-..+.|.|++-++|. +|.+..++.|
T Consensus 88 ~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~----nl~~ai~~vk~ag~~~~~~i~yt~sp~--~t~e~~~~~a 161 (499)
T PRK12330 88 LLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPR----NLEHAMKAVKKVGKHAQGTICYTVSPI--HTVEGFVEQA 161 (499)
T ss_pred cCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHH----HHHHHHHHHHHhCCeEEEEEEEecCCC--CCHHHHHHHH
Confidence 34555555556667777776655411 00 011221 112333333344344457888888885 6888888888
Q ss_pred HHHHHHhhcCCCCCCcEEEEecC---Chh----HHHHHHHHH----HcCceeeEecccCHHHHHHHHHcCCcEEEechhh
Q 016178 172 HDLLKLYSEIDVPPERLLFKIPS---TWQ----GIEASRLLE----SEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGR 240 (394)
Q Consensus 172 ~~l~~l~~~~gi~~~nvlIKIPa---T~e----Gi~A~~~L~----~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgR 240 (394)
+++.++ |+ +.|+||=.+ |++ =++++++-- .-++||+-|+=.+..-+++|++||+.+|--=++-
T Consensus 162 ~~l~~~----Ga--d~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~G 235 (499)
T PRK12330 162 KRLLDM----GA--DSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISS 235 (499)
T ss_pred HHHHHc----CC--CEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccc
Confidence 888775 34 678777433 222 234444322 1257888888899999999999999877655555
Q ss_pred h
Q 016178 241 L 241 (394)
Q Consensus 241 i 241 (394)
+
T Consensus 236 l 236 (499)
T PRK12330 236 M 236 (499)
T ss_pred c
Confidence 4
No 73
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.88 E-value=26 Score=37.74 Aligned_cols=127 Identities=14% Similarity=0.133 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcEEEEecCChhH----HHHHHHHHHc-C--ceeeEecccCHHHHHHHHHcCCcEEEe--
Q 016178 166 GIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG----IEASRLLESE-G--IQTHLTFVYSFAQAAAAAQAGASVIQI-- 236 (394)
Q Consensus 166 ~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eG----i~A~~~L~~e-G--I~vN~TlVFS~~QA~aaa~AGa~~ISp-- 236 (394)
...+.++.|++. |+ +-+. |+.+..- +++++.+.+. + +.+-+--|.+.++|..+.+||+..|-+
T Consensus 242 ~~~~ra~~Lv~a----Gv--d~i~--vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~ 313 (502)
T PRK07107 242 DYAERVPALVEA----GA--DVLC--IDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGI 313 (502)
T ss_pred hHHHHHHHHHHh----CC--CeEe--ecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECC
Confidence 456777777775 33 3444 4533332 7888888875 3 566666699999999999999987633
Q ss_pred chhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHH----HHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccH
Q 016178 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYN----YIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPL 309 (394)
Q Consensus 237 FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~----~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~ 309 (394)
=-|.+.-.-. .. ..| .|-+..+.++.+ |++.+|.+..|| -..+|+..++.. .+|+|.+.+.-
T Consensus 314 g~Gs~c~tr~-~~---------~~g-~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~ 382 (502)
T PRK07107 314 GGGSICITRE-QK---------GIG-RGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGR 382 (502)
T ss_pred CCCcCccccc-cc---------CCC-ccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeCh
Confidence 2242221100 00 011 122333333333 455567545555 567889999887 59999988765
Q ss_pred HH
Q 016178 310 KV 311 (394)
Q Consensus 310 ~v 311 (394)
-+
T Consensus 383 ~~ 384 (502)
T PRK07107 383 YF 384 (502)
T ss_pred hh
Confidence 43
No 74
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=69.56 E-value=22 Score=36.44 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=70.8
Q ss_pred CChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCcccchhhccCCCchHHHHHH
Q 016178 194 STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (394)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISp--FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (394)
.||+=|+.++... ++++-+-.+.+.+-|..|.++|++.|.. --||--| .+ ...+..+.+
T Consensus 208 ~~~~~l~~lr~~~--~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld----------------~~-~~~~~~l~~ 268 (351)
T cd04737 208 LSPADIEFIAKIS--GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLD----------------GG-PASFDSLPE 268 (351)
T ss_pred CCHHHHHHHHHHh--CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCC----------------CC-chHHHHHHH
Confidence 4887776666554 6777777788999999999999987765 4343321 00 123444444
Q ss_pred HHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHHHHHHhCCC
Q 016178 272 AYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (394)
Q Consensus 272 iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~~~ 320 (394)
+. +..+.+..|+ .-.+|+..++++ .+|+|.+.+.-.++..+...+.
T Consensus 269 i~---~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 269 IA---EAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HH---HHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 33 3333345555 567889999987 5999999999888888765443
No 75
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=69.09 E-value=16 Score=33.27 Aligned_cols=92 Identities=26% Similarity=0.338 Sum_probs=55.6
Q ss_pred EEe--cC-ChhHHHHHHHHHHc--CceeeEecccCH---HHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccC
Q 016178 190 FKI--PS-TWQGIEASRLLESE--GIQTHLTFVYSF---AQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRG 261 (394)
Q Consensus 190 IKI--Pa-T~eGi~A~~~L~~e--GI~vN~TlVFS~---~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~ 261 (394)
||| |. +..|++.++.+.+. ++.+-+.+-+.- .++..++++|+.++..-.-
T Consensus 29 ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~---------------------- 86 (202)
T cd04726 29 IEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA---------------------- 86 (202)
T ss_pred EEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee----------------------
Confidence 777 33 23688999999886 777766533332 3678899999988874311
Q ss_pred CCchHHHHHHHHHHHHHcCCchHHHH--hhcCChhhhHh--hhCCCeecc
Q 016178 262 EDPALSLVSKAYNYIHKYGHKSKLMA--AAVRNKQDLFS--LLGVDYIIA 307 (394)
Q Consensus 262 ~d~Gv~~v~~iy~~~~~~g~~t~vLa--AS~R~~~~i~~--laG~D~lTi 307 (394)
++-....++.++.+++|.+. +. -+..+..++.. ..|+|++.+
T Consensus 87 --~~~~~~~~~i~~~~~~g~~~--~v~~~~~~t~~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 87 --APLSTIKKAVKAAKKYGKEV--QVDLIGVEDPEKRAKLLKLGVDIVIL 132 (202)
T ss_pred --CCHHHHHHHHHHHHHcCCeE--EEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 01123445566666666433 32 24445555554 458888765
No 76
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=69.04 E-value=34 Score=36.57 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=75.3
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhhh-cc--cChhhhhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHH
Q 016178 96 LGICSLPDTIFRNAVDMALADSSCC-EL--ENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVH 172 (394)
Q Consensus 96 ~~~~~nP~ti~~~ai~~al~~~~~~-~l--~~~~~~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~ 172 (394)
.|....|+.+.+..|+.++..|... .+ ...+.+ ..+..++.+++.-..+.|.++.-.+|+ ++.+..++-|+
T Consensus 87 ~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~----n~~~~i~~ak~~G~~v~~~i~~t~~p~--~t~e~~~~~a~ 160 (467)
T PRK14041 87 VGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIR----NLEKSIEVAKKHGAHVQGAISYTVSPV--HTLEYYLEFAR 160 (467)
T ss_pred cCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHH----HHHHHHHHHHHCCCEEEEEEEeccCCC--CCHHHHHHHHH
Confidence 3443445556677777776655411 00 011111 112333333333223456677667773 56777777777
Q ss_pred HHHHHhhcCCCCCCcEEEEecC---Ch-hHHHHHHHHHH-----cCceeeEecccCHHHHHHHHHcCCcEEEechh
Q 016178 173 DLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLES-----EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVG 239 (394)
Q Consensus 173 ~l~~l~~~~gi~~~nvlIKIPa---T~-eGi~A~~~L~~-----eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVg 239 (394)
++.+. |+ ++|+||=.+ |+ +--+-++.|.+ -++|++-|.=.+..-+++|++||+.+|.-=++
T Consensus 161 ~l~~~----Ga--d~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 230 (467)
T PRK14041 161 ELVDM----GV--DSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAIS 230 (467)
T ss_pred HHHHc----CC--CEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeecc
Confidence 77664 44 577777433 22 22233344433 27888999999999999999999876654443
No 77
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=68.63 E-value=92 Score=31.46 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=68.3
Q ss_pred HHHHHHHHc-CceeeEecc---cCHHHHHHHHHcCCcEEEechhhhh-hhhhcCC--CCcccchhhccCCCchHHHHHHH
Q 016178 200 EASRLLESE-GIQTHLTFV---YSFAQAAAAAQAGASVIQIFVGRLR-DWARNHS--GDPEIDDALKRGEDPALSLVSKA 272 (394)
Q Consensus 200 ~A~~~L~~e-GI~vN~TlV---FS~~QA~aaa~AGa~~ISpFVgRid-d~~~~~~--~d~~~~~~~~~~~d~Gv~~v~~i 272 (394)
+.++.+.+. +++|-+-.+ ++.+-|..+.++|+++|-.. ||-- .|..-.. ........+. .+-|+..+..+
T Consensus 169 e~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vs-g~gGt~~~~ie~~r~~~~~~~~~~--~~~g~~t~~~l 245 (333)
T TIGR02151 169 EKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVA-GAGGTSWAQVENYRAKGSNLASFF--NDWGIPTAASL 245 (333)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC-CCCCCcccchhhhcccccccchhh--hcccHhHHHHH
Confidence 556666665 666665555 78888888999999988886 4410 1110000 0000000000 12367777766
Q ss_pred HHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHHHHHHh
Q 016178 273 YNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKE 317 (394)
Q Consensus 273 y~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl~~L~~ 317 (394)
++..+ ...+..|+ .-.+|+..++.. .+|||.+.+.-.+|..+..
T Consensus 246 ~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~ 292 (333)
T TIGR02151 246 LEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALD 292 (333)
T ss_pred HHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHh
Confidence 66644 22344455 456688999887 5899999999999888753
No 78
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=68.44 E-value=84 Score=31.01 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=73.4
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeE-ecccC
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHL-TFVYS 219 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~-TlVFS 219 (394)
+.+.+.++ .+-+-||.+-..|.+ +|+++.+..++.|+ ..|.=|.....+..+++|.+. +|++-+ --+++
T Consensus 169 ~~lr~~~g-~~~l~vD~n~~~~~~----~A~~~~~~l~~~~l----~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~ 239 (316)
T cd03319 169 RAIREAAP-DARLRVDANQGWTPE----EAVELLRELAELGV----ELIEQPVPAGDDDGLAYLRDKSPLPIMADESCFS 239 (316)
T ss_pred HHHHHhCC-CCeEEEeCCCCcCHH----HHHHHHHHHHhcCC----CEEECCCCCCCHHHHHHHHhcCCCCEEEeCCCCC
Confidence 34444444 456677777777865 45555444443333 466767666556666677665 566432 34799
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 220 ~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
+.+...+.+.| +.++.|=++++ -|+..++++.++.+.+|.+.
T Consensus 240 ~~~~~~~~~~~~~d~v~~~~~~~----------------------GGi~~~~~~~~~a~~~gi~~ 282 (316)
T cd03319 240 AADAARLAGGGAYDGINIKLMKT----------------------GGLTEALRIADLARAAGLKV 282 (316)
T ss_pred HHHHHHHHhcCCCCEEEEecccc----------------------CCHHHHHHHHHHHHHcCCCE
Confidence 99999888865 78888776664 27888999999999988655
No 79
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=68.29 E-value=41 Score=33.42 Aligned_cols=99 Identities=24% Similarity=0.336 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHhcCCC-CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--hH------------
Q 016178 134 NKALVNVGGDLAKMVP-GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QG------------ 198 (394)
Q Consensus 134 ~~~~v~~g~eil~~v~-G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--eG------------ 198 (394)
+..+.++++|++..+. =+|-.=| .+.|.---+ .++.+-.+++|+ .=++-.|..- .|
T Consensus 65 N~iv~em~~eiLp~v~~tPViaGv---~atDP~~~~---~~fl~~lk~~Gf---~GV~NfPTvgliDG~fR~~LEe~Gmg 135 (268)
T PF09370_consen 65 NEIVMEMAREILPVVKDTPVIAGV---CATDPFRDM---DRFLDELKELGF---SGVQNFPTVGLIDGQFRQNLEETGMG 135 (268)
T ss_dssp HHHHHHHHHHHGGG-SSS-EEEEE----TT-TT--H---HHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT--
T ss_pred hHHHHHHHHhhhhhccCCCEEEEe---cCcCCCCcH---HHHHHHHHHhCC---ceEEECCcceeeccHHHHHHHhcCCC
Confidence 4567788899999885 5788777 333432111 112222334444 3345667532 22
Q ss_pred ----HHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhh
Q 016178 199 ----IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLR 242 (394)
Q Consensus 199 ----i~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRid 242 (394)
++.++.-.+.|+-+ +-.+|+.+||.+-++||+++|.+.+|.-.
T Consensus 136 y~~EVemi~~A~~~gl~T-~~yvf~~e~A~~M~~AGaDiiv~H~GlT~ 182 (268)
T PF09370_consen 136 YDREVEMIRKAHEKGLFT-TAYVFNEEQARAMAEAGADIIVAHMGLTT 182 (268)
T ss_dssp HHHHHHHHHHHHHTT-EE---EE-SHHHHHHHHHHT-SEEEEE-SS--
T ss_pred HHHHHHHHHHHHHCCCee-eeeecCHHHHHHHHHcCCCEEEecCCccC
Confidence 67778888888866 56799999999999999999999998754
No 80
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=68.02 E-value=22 Score=36.28 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=80.4
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhH-HHHHHHHHHcCceeeEec-c-cCHHHHHHHHHcCCcEEEe
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG-IEASRLLESEGIQTHLTF-V-YSFAQAAAAAQAGASVIQI 236 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eG-i~A~~~L~~eGI~vN~Tl-V-FS~~QA~aaa~AGa~~ISp 236 (394)
..+.++..++-++.|.++ || +.|-+=+|+.-+. .++++.+.+.+-++.++. + -..+....+.++|+..|..
T Consensus 18 ~~~s~~~k~~ia~~L~~~----Gv--~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i 91 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEA----GV--DELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHI 91 (365)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEE
Confidence 456666666665555554 56 5677778876654 588888887754443332 2 3456666778889999988
Q ss_pred chhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHH--HhhcCChhhhHh------hhCCCeeccc
Q 016178 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM--AAAVRNKQDLFS------LLGVDYIIAP 308 (394)
Q Consensus 237 FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vL--aAS~R~~~~i~~------laG~D~lTip 308 (394)
|++-=+-+...+.. ...+..+..+.++.++.+++|.+..+- -++-.+.+.+.+ .+|+|.+.++
T Consensus 92 ~~~~Sd~~~~~~~~---------~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~ 162 (365)
T TIGR02660 92 SIPVSDLQIEAKLR---------KDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFA 162 (365)
T ss_pred EEccCHHHHHHHhC---------cCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEc
Confidence 87643333322221 111246788888888999887653211 122222333332 4798887665
Q ss_pred HH
Q 016178 309 LK 310 (394)
Q Consensus 309 ~~ 310 (394)
.+
T Consensus 163 DT 164 (365)
T TIGR02660 163 DT 164 (365)
T ss_pred cc
Confidence 43
No 81
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=67.89 E-value=63 Score=33.77 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=81.6
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc----CceeeEe-cc
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE----GIQTHLT-FV 217 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e----GI~vN~T-lV 217 (394)
.+.+.+...+.+-||++-+++.+..++-++++ +++++ .+|-=|...+.+..+++|.+. +|++.+. -+
T Consensus 232 avRe~vG~~~~L~vDaN~~w~~~~A~~~~~~L----~~~~l----~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs~ 303 (415)
T cd03324 232 LAREVIGPDNKLMIDANQRWDVPEAIEWVKQL----AEFKP----WWIEEPTSPDDILGHAAIRKALAPLPIGVATGEHC 303 (415)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHh----hccCC----CEEECCCCCCcHHHHHHHHHhcccCCCceecCCcc
Confidence 44555544678888888888877655555554 33333 367778877788888888776 4888777 57
Q ss_pred cCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 218 YSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 218 FS~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
|+..+.....++| +.++.|=++++ -|+.-++++.++.+.+|.+.
T Consensus 304 ~~~~~~~~ll~~~a~dil~~d~~~~----------------------GGit~~~kia~lA~a~gi~~ 348 (415)
T cd03324 304 QNRVVFKQLLQAGAIDVVQIDSCRL----------------------GGVNENLAVLLMAAKFGVPV 348 (415)
T ss_pred CCHHHHHHHHHcCCCCEEEeCcccc----------------------CCHHHHHHHHHHHHHcCCeE
Confidence 8999998888876 68888877765 27888999999999887654
No 82
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=67.55 E-value=40 Score=33.46 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=76.6
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEE-------ecCChhHHHHHHHHHHc-CceeeEecccCHHHHHHHHHcCC
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK-------IPSTWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGA 231 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIK-------IPaT~eGi~A~~~L~~e-GI~vN~TlVFS~~QA~aaa~AGa 231 (394)
..+.+++.++-|+.|.++ || +.+=+= +|++..--++++.|.+. |..+-+ ++=.......|.++|.
T Consensus 21 ~~~s~e~k~~ia~~L~~~----Gv--~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~-l~~~~~~ie~A~~~g~ 93 (287)
T PRK05692 21 RFIPTADKIALIDRLSAA----GL--SYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAA-LTPNLKGLEAALAAGA 93 (287)
T ss_pred CCcCHHHHHHHHHHHHHc----CC--CEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEE-EecCHHHHHHHHHcCC
Confidence 456676666666666554 45 344442 67755444555555443 444432 2336777788889999
Q ss_pred cEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHH--H---Hh--hcC-ChhhhH------
Q 016178 232 SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL--M---AA--AVR-NKQDLF------ 297 (394)
Q Consensus 232 ~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~v--L---aA--S~R-~~~~i~------ 297 (394)
..+..|++--+-+..++.+ ...+..+..++++.++.+++|.+... . +. ..| +++.+.
T Consensus 94 ~~v~i~~~~s~~~~~~n~~---------~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
T PRK05692 94 DEVAVFASASEAFSQKNIN---------CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERL 164 (287)
T ss_pred CEEEEEEecCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 9998887655443322222 11123677888899999998865431 1 10 112 233332
Q ss_pred hhhCCCeecccH
Q 016178 298 SLLGVDYIIAPL 309 (394)
Q Consensus 298 ~laG~D~lTip~ 309 (394)
..+|+|.+.++.
T Consensus 165 ~~~G~d~i~l~D 176 (287)
T PRK05692 165 FALGCYEISLGD 176 (287)
T ss_pred HHcCCcEEEecc
Confidence 258999887653
No 83
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=67.31 E-value=43 Score=36.76 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=77.3
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhhh-cc--cChhhhhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHH
Q 016178 96 LGICSLPDTIFRNAVDMALADSSCC-EL--ENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVH 172 (394)
Q Consensus 96 ~~~~~nP~ti~~~ai~~al~~~~~~-~l--~~~~~~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~ 172 (394)
.|-..-|+.+.+..++.+...|... .+ ...+.+ ..+..++.+++.-..+.|.++...+|+ ++.+..++-++
T Consensus 88 ~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~----n~~~~i~~ak~~G~~v~~~i~~t~~p~--~t~~~~~~~a~ 161 (592)
T PRK09282 88 VGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVR----NMEVAIKAAKKAGAHVQGTISYTTSPV--HTIEKYVELAK 161 (592)
T ss_pred cccccccchhhHHHHHHHHHCCCCEEEEEEecChHH----HHHHHHHHHHHcCCEEEEEEEeccCCC--CCHHHHHHHHH
Confidence 4444445556666677776554311 00 011111 112233333333233456777777775 67788888888
Q ss_pred HHHHHhhcCCCCCCcEEEEecC---Ch-hHHHHHHHHHHc-----CceeeEecccCHHHHHHHHHcCCcEE----Eechh
Q 016178 173 DLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLESE-----GIQTHLTFVYSFAQAAAAAQAGASVI----QIFVG 239 (394)
Q Consensus 173 ~l~~l~~~~gi~~~nvlIKIPa---T~-eGi~A~~~L~~e-----GI~vN~TlVFS~~QA~aaa~AGa~~I----SpFVg 239 (394)
++.+. |+ +.|+||=.+ ++ +--+.++.|.++ |+||+-|.=+.+.-+++|++||+.+| +||-+
T Consensus 162 ~l~~~----Ga--d~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~ 235 (592)
T PRK09282 162 ELEEM----GC--DSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAF 235 (592)
T ss_pred HHHHc----CC--CEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCC
Confidence 88665 34 567777322 22 223333444433 88999999999999999999998765 45544
Q ss_pred h
Q 016178 240 R 240 (394)
Q Consensus 240 R 240 (394)
|
T Consensus 236 ~ 236 (592)
T PRK09282 236 G 236 (592)
T ss_pred C
Confidence 4
No 84
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.11 E-value=8.6 Score=38.43 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=63.9
Q ss_pred CcEEEEe------cCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhc
Q 016178 186 ERLLFKI------PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259 (394)
Q Consensus 186 ~nvlIKI------PaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~ 259 (394)
+-||||= ....+-++.+++....+.++-+ -+-+++|+..|+++|++||-.=
T Consensus 167 d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~V-Ev~tleea~eA~~~GaD~I~LD---------------------- 223 (288)
T PRK07428 167 DAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEV-ETETLEQVQEALEYGADIIMLD---------------------- 223 (288)
T ss_pred heeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEE-ECCCHHHHHHHHHcCCCEEEEC----------------------
Confidence 4577772 1222333333433322344433 3569999999999999988531
Q ss_pred cCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccH
Q 016178 260 RGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (394)
Q Consensus 260 ~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~ 309 (394)
+-+...++++.+.+++...+..+.++..-|.+++.+ .+|+|++.+.-
T Consensus 224 ---n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 224 ---NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred ---CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEch
Confidence 125677888888777655566666666789999876 69999997654
No 85
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=67.10 E-value=26 Score=36.33 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=70.6
Q ss_pred HHhcCCCCeEEEEecCCc--cCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCH
Q 016178 143 DLAKMVPGRVSTEVDARL--AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSF 220 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~l--a~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~ 220 (394)
++...-+| +.+--.|++ -++.+++.+...+|.++. ++..|-||+++.. ++..+..
T Consensus 165 ~~R~~~~g-~~~iSP~~h~di~s~edl~~~I~~Lr~~~-----~~~pVgvKl~~~~-~~~~~~~---------------- 221 (368)
T PF01645_consen 165 RIRGVPPG-VDLISPPPHHDIYSIEDLAQLIEELRELN-----PGKPVGVKLVAGR-GVEDIAA---------------- 221 (368)
T ss_dssp HHHTS-TT---EE--SS-TT-SSHHHHHHHHHHHHHH------TTSEEEEEEE-ST-THHHHHH----------------
T ss_pred HHhCCCCC-CccccCCCCCCcCCHHHHHHHHHHHHhhC-----CCCcEEEEECCCC-cHHHHHH----------------
Confidence 34444455 333333333 356777777777777774 4679999999875 2222111
Q ss_pred HHHHHHHHcCCcEEEechhh----------hhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchH---HHH
Q 016178 221 AQAAAAAQAGASVIQIFVGR----------LRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK---LMA 287 (394)
Q Consensus 221 ~QA~aaa~AGa~~ISpFVgR----------idd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~---vLa 287 (394)
.++++|+++|.+-=+. +++|+ -|-+....++++++.++|.+-+ +..
T Consensus 222 ----~~~~ag~D~ItIDG~~GGTGAap~~~~d~~G-----------------lP~~~~l~~a~~~L~~~glr~~V~Li~s 280 (368)
T PF01645_consen 222 ----GAAKAGADFITIDGAEGGTGAAPLTSMDHVG-----------------LPTEYALARAHQALVKNGLRDRVSLIAS 280 (368)
T ss_dssp ----HHHHTT-SEEEEE-TT---SSEECCHHHHC--------------------HHHHHHHHHHHHHCTT-CCCSEEEEE
T ss_pred ----hhhhccCCEEEEeCCCCCCCCCchhHHhhCC-----------------CcHHHHHHHHHHHHHHcCCCCceEEEEe
Confidence 1677888888753221 22221 1445667788888888876543 335
Q ss_pred hhcCChhhhHh--hhCCCeecccHHHHHHH
Q 016178 288 AAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315 (394)
Q Consensus 288 AS~R~~~~i~~--laG~D~lTip~~vl~~L 315 (394)
-.+++..+++. .+|+|.+-+.-..|-.+
T Consensus 281 Ggl~t~~dv~kalaLGAD~v~igt~~liAl 310 (368)
T PF01645_consen 281 GGLRTGDDVAKALALGADAVYIGTAALIAL 310 (368)
T ss_dssp SS--SHHHHHHHHHCT-SEEE-SHHHHHHC
T ss_pred CCccCHHHHHHHHhcCCCeeEecchhhhhc
Confidence 56889999987 79999998877766544
No 86
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=66.24 E-value=17 Score=37.22 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=72.6
Q ss_pred CChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCc--EEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHH
Q 016178 194 STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGAS--VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (394)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~--~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (394)
.||+-|+.++. .-++++-+--|+|.+.|..|.++|+. ++|=-=||=.||. -+.+....+
T Consensus 212 ~~w~~i~~~~~--~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~-----------------~~~~~~L~~ 272 (356)
T PF01070_consen 212 LTWDDIEWIRK--QWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWG-----------------PPTIDALPE 272 (356)
T ss_dssp -SHHHHHHHHH--HCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS------------------BHHHHHHH
T ss_pred CCHHHHHHHhc--ccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccc-----------------cccccccHH
Confidence 68866655554 34899999999999999999999976 4555566765553 245666666
Q ss_pred HHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHHHHHHhCCC
Q 016178 272 AYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (394)
Q Consensus 272 iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~~~ 320 (394)
+.+.+ +.+..|| --.+|+-.+++. .+|+|.+-+.-.+|..+...+.
T Consensus 273 i~~~~---~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~ 321 (356)
T PF01070_consen 273 IRAAV---GDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGGE 321 (356)
T ss_dssp HHHHH---TTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHH
T ss_pred HHhhh---cCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhH
Confidence 65544 4456555 456889999987 6999999999999998865543
No 87
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=66.14 E-value=13 Score=37.17 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=49.6
Q ss_pred cCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhH
Q 016178 218 YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF 297 (394)
Q Consensus 218 FS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~ 297 (394)
-+++|+..++++|+++|-. |.+ ....++++.++.++.+.+..+-++..-|.+++.
T Consensus 197 ~tleqa~ea~~agaDiI~L-----Dn~--------------------~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~ 251 (284)
T PRK06096 197 DTPKEAIAALRAQPDVLQL-----DKF--------------------SPQQATEIAQIAPSLAPHCTLSLAGGINLNTLK 251 (284)
T ss_pred CCHHHHHHHHHcCCCEEEE-----CCC--------------------CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHH
Confidence 4999999999999998865 221 344566677766654556667777788999997
Q ss_pred h--hhCCCeecccH
Q 016178 298 S--LLGVDYIIAPL 309 (394)
Q Consensus 298 ~--laG~D~lTip~ 309 (394)
+ .+|+|++.+..
T Consensus 252 ~yA~tGvD~Is~ga 265 (284)
T PRK06096 252 NYADCGIRLFITSA 265 (284)
T ss_pred HHHhcCCCEEEECc
Confidence 6 79999985543
No 88
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=66.10 E-value=15 Score=39.05 Aligned_cols=128 Identities=17% Similarity=0.220 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEec-CC-hhHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEEEechhhhh
Q 016178 167 IIRKVHDLLKLYSEIDVPPERLLFKIP-ST-WQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLR 242 (394)
Q Consensus 167 ~I~eA~~l~~l~~~~gi~~~nvlIKIP-aT-~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRid 242 (394)
..+.++.+++. |+ +-++|..+ .- ..-+..++.+.++ ++.+-+=-|.|.++|..+.++|+.+|..=+|.-.
T Consensus 229 ~~e~a~~L~~a----gv--dvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs 302 (486)
T PRK05567 229 NEERAEALVEA----GV--DVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGS 302 (486)
T ss_pred hHHHHHHHHHh----CC--CEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCc
Confidence 46777777774 33 33444433 11 1236678888876 6888889999999999999999999864223210
Q ss_pred hhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHH-hhcCChhhhHh--hhCCCeecccHHH
Q 016178 243 DWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKV 311 (394)
Q Consensus 243 d~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLa-AS~R~~~~i~~--laG~D~lTip~~v 311 (394)
.. .. ... ...| -|-+..+.++.+..++++ ..|++ -.+|+..++.. .+|+|.+.+.-.+
T Consensus 303 ~~----~~-r~~---~~~g-~p~~~~~~~~~~~~~~~~--~~viadGGi~~~~di~kAla~GA~~v~~G~~~ 363 (486)
T PRK05567 303 IC----TT-RIV---AGVG-VPQITAIADAAEAAKKYG--IPVIADGGIRYSGDIAKALAAGASAVMLGSML 363 (486)
T ss_pred cc----cc-eee---cCCC-cCHHHHHHHHHHHhccCC--CeEEEcCCCCCHHHHHHHHHhCCCEEEECccc
Confidence 00 00 000 0001 133445555555444433 33332 48899999987 6999998876553
No 89
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=65.24 E-value=85 Score=31.79 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=79.3
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc---CceeeEec-c
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE---GIQTHLTF-V 217 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e---GI~vN~Tl-V 217 (394)
+.+.+.+...+.+=||++-+++.+..++-++++..+ ++ ..|-=|.-++.+...++|.+. +|++-+-- +
T Consensus 173 ~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~----~~----~~~EeP~~~~d~~~~~~l~~~~~~~iPIa~gE~~ 244 (352)
T cd03328 173 AAARRAIGPDAELFVDANGAYSRKQALALARAFADE----GV----TWFEEPVSSDDLAGLRLVRERGPAGMDIAAGEYA 244 (352)
T ss_pred HHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHh----Cc----chhhCCCChhhHHHHHHHHhhCCCCCCEEecccc
Confidence 344455555678888988888887666666666443 22 345556666667777777765 46766654 6
Q ss_pred cCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchH
Q 016178 218 YSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK 284 (394)
Q Consensus 218 FS~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~ 284 (394)
|+..++....+.| +.++.|=+.++ -|+.-++++.++.+.+|.+.-
T Consensus 245 ~~~~~~~~li~~~a~div~~d~~~~----------------------GGit~~~~ia~~A~a~gi~~~ 290 (352)
T cd03328 245 YTLAYFRRLLEAHAVDVLQADVTRC----------------------GGVTGFLQAAALAAAHHVDLS 290 (352)
T ss_pred cCHHHHHHHHHcCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCeec
Confidence 8999999999887 67888776654 278889999999888876553
No 90
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=64.27 E-value=37 Score=35.37 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=72.8
Q ss_pred cCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCcccchhhccCCCchHHHHH
Q 016178 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (394)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISp--FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (394)
..||+=|+-++... ++++-+--|.+.+.|..|.++|++.|-. -=||..|. .-+.+..+.
T Consensus 239 ~~tW~~i~~lr~~~--~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~-----------------~~~t~~~L~ 299 (383)
T cd03332 239 SLTWEDLAFLREWT--DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDG-----------------SIAALDALP 299 (383)
T ss_pred CCCHHHHHHHHHhc--CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCC-----------------CcCHHHHHH
Confidence 35897777666643 7889999999999999999999876543 22332111 113445555
Q ss_pred HHHHHHHHcCCch-HHHHhhcCChhhhHh--hhCCCeecccHHHHHHHHhCCC
Q 016178 271 KAYNYIHKYGHKS-KLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (394)
Q Consensus 271 ~iy~~~~~~g~~t-~vLaAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~~~ 320 (394)
++.+.+. .+. .++...+|+-.+++. .+|+|.+-+.-.++..+...+.
T Consensus 300 ei~~~~~---~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~ 349 (383)
T cd03332 300 EIVEAVG---DRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGE 349 (383)
T ss_pred HHHHHhc---CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccH
Confidence 5544442 233 345678899999987 5999999999999888765443
No 91
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=63.94 E-value=38 Score=34.11 Aligned_cols=112 Identities=20% Similarity=0.198 Sum_probs=65.1
Q ss_pred HHHHHHHHc-CceeeEecc---cCHHHHHHHHHcCCcEEEechhh-------hhhhhhcCCCCcccchhhccCCCchHHH
Q 016178 200 EASRLLESE-GIQTHLTFV---YSFAQAAAAAQAGASVIQIFVGR-------LRDWARNHSGDPEIDDALKRGEDPALSL 268 (394)
Q Consensus 200 ~A~~~L~~e-GI~vN~TlV---FS~~QA~aaa~AGa~~ISpFVgR-------idd~~~~~~~d~~~~~~~~~~~d~Gv~~ 268 (394)
+.++.+.+. .+++-+-.+ .|.+-|..+.++|+..|-+- |+ +..+- ....+.+ ......+-|+..
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs-G~GGt~~~~ie~~r-~~~~~~~---~~~~~~~~g~~t 242 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVA-GAGGTSWARVENYR-AKDSDQR---LAEYFADWGIPT 242 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC-CCCCCccccccccc-ccccccc---cccccccccccH
Confidence 455555555 566655555 77888888888898777653 21 11100 0000000 000001235555
Q ss_pred HHHHHHHHHHcCCchHHHH-hhcCChhhhHh--hhCCCeecccHHHHHHHHh
Q 016178 269 VSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKVLQSLKE 317 (394)
Q Consensus 269 v~~iy~~~~~~g~~t~vLa-AS~R~~~~i~~--laG~D~lTip~~vl~~L~~ 317 (394)
+..+++..+..+ +..|++ -.+|+..++.+ .+|+|.+.+.-.+|..+..
T Consensus 243 ~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~ 293 (326)
T cd02811 243 AASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE 293 (326)
T ss_pred HHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc
Confidence 555555444332 455554 45699999987 5899999999999988866
No 92
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=63.76 E-value=22 Score=34.97 Aligned_cols=86 Identities=20% Similarity=0.150 Sum_probs=62.2
Q ss_pred CeEEEEe---cCCccCCHHHHHHHHHHHHHHhhcCCCCC---CcEE---EEecCChhHHHHHHHHH----Hc-CceeeEe
Q 016178 150 GRVSTEV---DARLAYDTHGIIRKVHDLLKLYSEIDVPP---ERLL---FKIPSTWQGIEASRLLE----SE-GIQTHLT 215 (394)
Q Consensus 150 G~VS~EV---dp~la~D~e~~I~eA~~l~~l~~~~gi~~---~nvl---IKIPaT~eGi~A~~~L~----~e-GI~vN~T 215 (394)
|.|++.= +|++..|.+++++.|.+=.+.|++.|+|. +|.. .+-+..++-+.++..+. ++ ++++=+-
T Consensus 7 GmvHL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVn 86 (254)
T PF03437_consen 7 GMVHLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVN 86 (254)
T ss_pred EEEcCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEee
Confidence 4555543 88888899999999999999999999974 3311 23346677777764443 44 7888888
Q ss_pred ccc-CHHHHHHHHHc-CCcEEE
Q 016178 216 FVY-SFAQAAAAAQA-GASVIQ 235 (394)
Q Consensus 216 lVF-S~~QA~aaa~A-Ga~~IS 235 (394)
++. +...+++.|.| |+++|=
T Consensus 87 vL~nd~~aalaiA~A~ga~FIR 108 (254)
T PF03437_consen 87 VLRNDPKAALAIAAATGADFIR 108 (254)
T ss_pred eecCCCHHHHHHHHHhCCCEEE
Confidence 888 77777776655 888874
No 93
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=63.53 E-value=1.2e+02 Score=30.12 Aligned_cols=104 Identities=15% Similarity=-0.006 Sum_probs=64.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHh-------------hcCCCC--CCcEEEEecC------
Q 016178 136 ALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLY-------------SEIDVP--PERLLFKIPS------ 194 (394)
Q Consensus 136 ~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~-------------~~~gi~--~~nvlIKIPa------ 194 (394)
.+.++.+.+.+.++-+|.+-+.|.+ |.+.+.+-|+.+.+.. ..+.|+ +.+..++-..
T Consensus 144 ~~~~i~~~v~~~~~iPv~vKl~p~~--~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~S 221 (294)
T cd04741 144 ATLEYLTAVKAAYSIPVGVKTPPYT--DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLA 221 (294)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCC--CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcC
Confidence 4455555665666778999998865 5555554444443320 111133 2222221011
Q ss_pred ----ChhHHHHHHHHHHc---CceeeEec-ccCHHHHHHHHHcCCcEEEechhhh
Q 016178 195 ----TWQGIEASRLLESE---GIQTHLTF-VYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 195 ----T~eGi~A~~~L~~e---GI~vN~Tl-VFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
.|..++.++++.+. +|++-..- |+|.++|+.+..+||+.|..+-+=+
T Consensus 222 G~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~ 276 (294)
T cd04741 222 GAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALG 276 (294)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhh
Confidence 34457888888664 38877655 9999999999999999998876655
No 94
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=61.37 E-value=38 Score=34.66 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=74.1
Q ss_pred CChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCcccchhhccCCCchHHHHHH
Q 016178 194 STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (394)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISp--FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (394)
.||+=|+.++.-. ++++-+--|.+.+.|..|.++|+..|.. --||..|. .-+.+....+
T Consensus 200 ~~~~~i~~l~~~~--~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~-----------------~~~~~~~L~~ 260 (344)
T cd02922 200 LTWDDIKWLRKHT--KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDT-----------------APAPIEVLLE 260 (344)
T ss_pred CCHHHHHHHHHhc--CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCC-----------------CCCHHHHHHH
Confidence 4665555444322 6777777888999999999999876554 22333221 1245667777
Q ss_pred HHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHHHHHHhCC
Q 016178 272 AYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESA 319 (394)
Q Consensus 272 iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~~ 319 (394)
+++.++..+.+..|+ .-.+|+-.++++ .+|+|.+-+.-.+|..+...+
T Consensus 261 i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G 311 (344)
T cd02922 261 IRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYG 311 (344)
T ss_pred HHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhcc
Confidence 877776655455555 667899999988 699999999988888876544
No 95
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=61.34 E-value=1e+02 Score=31.49 Aligned_cols=117 Identities=18% Similarity=0.146 Sum_probs=68.1
Q ss_pred HHHHHHHHHc-CceeeEecc---cCHHHHHHHHHcCCcEEEechhhh-hhhhhcCCCCcccc-hhhccCCCchHHHHHHH
Q 016178 199 IEASRLLESE-GIQTHLTFV---YSFAQAAAAAQAGASVIQIFVGRL-RDWARNHSGDPEID-DALKRGEDPALSLVSKA 272 (394)
Q Consensus 199 i~A~~~L~~e-GI~vN~TlV---FS~~QA~aaa~AGa~~ISpFVgRi-dd~~~~~~~d~~~~-~~~~~~~d~Gv~~v~~i 272 (394)
++.++.+.+. +++|-+-.+ .+.+-|..+.++|+.+|-+. |+= ..|.+-... ...+ ..+....+.|+..+..+
T Consensus 175 le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs-g~GGt~~~~ie~~-R~~~~~~~~~~~~~g~pt~~~l 252 (352)
T PRK05437 175 LDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVA-GAGGTSWAAIENY-RARDDRLASYFADWGIPTAQSL 252 (352)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC-CCCCCCccchhhh-hhhccccccccccccCCHHHHH
Confidence 3566777766 778777666 78888888889999888773 320 000000000 0000 00000012355555555
Q ss_pred HHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHHHHHHhC
Q 016178 273 YNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKES 318 (394)
Q Consensus 273 y~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~ 318 (394)
++..+.. .+..|+ .-.+|+..++.+ .+|||.+-+.-.+|..+...
T Consensus 253 ~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~ 300 (352)
T PRK05437 253 LEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEG 300 (352)
T ss_pred HHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhc
Confidence 5544432 133444 556888999987 58999999999988887544
No 96
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=60.96 E-value=25 Score=38.05 Aligned_cols=137 Identities=13% Similarity=0.145 Sum_probs=86.0
Q ss_pred CCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh-hHHHHHHHHHHcCc-eeeEecccCH----------HHHHH
Q 016178 158 ARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-QGIEASRLLESEGI-QTHLTFVYSF----------AQAAA 225 (394)
Q Consensus 158 p~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~-eGi~A~~~L~~eGI-~vN~TlVFS~----------~QA~a 225 (394)
|...+++++-++-|+.|.++ || +.|=+=.|+.. .=.++++.+.+.+. ++.++..... ....+
T Consensus 16 ~g~~~s~eeKl~Ia~~L~~~----GV--d~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea 89 (526)
T TIGR00977 16 EGVSFSLEDKIRIAERLDDL----GI--HYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQA 89 (526)
T ss_pred CCCCCCHHHHHHHHHHHHHc----CC--CEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHH
Confidence 33567787777777776665 56 66777778765 44888888887776 3444444322 12445
Q ss_pred HHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhc----CC-hhhhHh--
Q 016178 226 AAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAV----RN-KQDLFS-- 298 (394)
Q Consensus 226 aa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~----R~-~~~i~~-- 298 (394)
+.++|...|..|++=-+-+...+... ..+.-+..+.++.+|.+.+|.+....+..| |. ++.+.+
T Consensus 90 ~~~~~~~~v~i~~~~Sd~h~~~~l~~---------s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~ 160 (526)
T TIGR00977 90 LIKAETPVVTIFGKSWDLHVLEALQT---------TLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATL 160 (526)
T ss_pred HhcCCCCEEEEEeCCCHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHH
Confidence 66779999999987655554332221 112467888899999999987765433322 33 333332
Q ss_pred ----hhCCCeecccH
Q 016178 299 ----LLGVDYIIAPL 309 (394)
Q Consensus 299 ----laG~D~lTip~ 309 (394)
.+|+|.+.++.
T Consensus 161 ~~a~~aGad~i~i~D 175 (526)
T TIGR00977 161 ATAQQAGADWLVLCD 175 (526)
T ss_pred HHHHhCCCCeEEEec
Confidence 58999886653
No 97
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=60.88 E-value=1.2e+02 Score=30.90 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=77.6
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEec-ccC
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VYS 219 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-VFS 219 (394)
+.+.+.+...+.+-||++-+.|.+..++-++++.. ++ -..|-=|.....+...++|.++ +|++.+.= +++
T Consensus 180 ~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~----~~----l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~ 251 (368)
T cd03329 180 LAVREAVGPDMRLMHDGAHWYSRADALRLGRALEE----LG----FFWYEDPLREASISSYRWLAEKLDIPILGTEHSRG 251 (368)
T ss_pred HHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhh----cC----CCeEeCCCCchhHHHHHHHHhcCCCCEEccCcccC
Confidence 34444454456777888888887655555555533 22 2356667777778888888887 78886554 677
Q ss_pred -HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 220 -FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 220 -~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
+.+.....++| +.++.|=++++ -|+.-++++.++.+.+|.++
T Consensus 252 ~~~~~~~~i~~~a~d~v~~d~~~~----------------------GGit~~~~ia~~a~~~gi~~ 295 (368)
T cd03329 252 ALESRADWVLAGATDFLRADVNLV----------------------GGITGAMKTAHLAEAFGLDV 295 (368)
T ss_pred cHHHHHHHHHhCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCEE
Confidence 88888888776 56777755553 28888889999888888665
No 98
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=59.88 E-value=16 Score=36.43 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=55.1
Q ss_pred HHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHH
Q 016178 201 ASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHK 278 (394)
Q Consensus 201 A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~ 278 (394)
|++.+.+. +.++-+-+ .+++|+..++++|+++|-.= . -....++++.++++.
T Consensus 178 av~~~r~~~~~~kIeVEv-~tleea~ea~~~GaDiI~lD-----n--------------------~~~e~l~~~v~~l~~ 231 (277)
T TIGR01334 178 AIGRLKQTAPERKITVEA-DTIEQALTVLQASPDILQLD-----K--------------------FTPQQLHHLHERLKF 231 (277)
T ss_pred HHHHHHHhCCCCCEEEEC-CCHHHHHHHHHcCcCEEEEC-----C--------------------CCHHHHHHHHHHHhc
Confidence 34444433 33343333 49999999999999887431 1 124456666677765
Q ss_pred cCCchHHHHhhcCChhhhHh--hhCCCeeccc
Q 016178 279 YGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (394)
Q Consensus 279 ~g~~t~vLaAS~R~~~~i~~--laG~D~lTip 308 (394)
.+.+..+-++..-|.+++.+ .+|+|++.++
T Consensus 232 ~~~~~~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 232 FDHIPTLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred cCCCEEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 55667777888889999976 7999998554
No 99
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=59.75 E-value=1.5e+02 Score=30.09 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=80.0
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEec-
Q 016178 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF- 216 (394)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl- 216 (394)
+..+.+.+.+..-+.+-||++-+.+.+..++-++++.. +++ ..|-=|..++.+...++|.+. ++++.+--
T Consensus 151 ~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~----~~l----~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~ 222 (361)
T cd03322 151 KLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEP----YRL----FWMEDPTPAENQEAFRLIRQHTATPLAVGEV 222 (361)
T ss_pred HHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhh----cCC----CEEECCCCcccHHHHHHHHhcCCCCEEeccC
Confidence 33445555564467788899888888755555444433 322 367778877778888888877 57765543
Q ss_pred ccCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 217 VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 217 VFS~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
++++.++....++| +.++.|=++|+ -|+.-++++.++.+.+|.+.
T Consensus 223 ~~~~~~~~~~i~~~a~di~~~d~~~~----------------------GGit~~~~ia~~A~~~gi~~ 268 (361)
T cd03322 223 FNSIWDWQNLIQERLIDYIRTTVSHA----------------------GGITPARKIADLASLYGVRT 268 (361)
T ss_pred CcCHHHHHHHHHhCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCee
Confidence 68999999999887 67877776654 27888888888888887554
No 100
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=59.68 E-value=1e+02 Score=31.14 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=77.9
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEec-ccC
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VYS 219 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-VFS 219 (394)
+.+.+.+...+.+-||++-+++.+ +|.++.+..+++|+ ..|-=|.-++-+...+.|.+. ++++-+-- +++
T Consensus 167 ~avr~~~g~~~~l~vDaN~~~~~~----~A~~~~~~l~~~~i----~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~~ 238 (352)
T cd03325 167 AALREAVGPDIDIGVDFHGRVSKP----MAKDLAKELEPYRL----LFIEEPVLPENVEALAEIAARTTIPIATGERLFS 238 (352)
T ss_pred HHHHHhhCCCCEEEEECCCCCCHH----HHHHHHHhccccCC----cEEECCCCccCHHHHHHHHHhCCCCEEecccccC
Confidence 345555655788899998888865 45555554433322 356666666667777777766 78876654 689
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 220 ~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
+.+...+.+.| +.++.|=++++ -|+..++++.++.+++|.++
T Consensus 239 ~~~~~~~~~~~~~d~v~~d~~~~----------------------GGit~~~~~~~lA~~~gi~~ 281 (352)
T cd03325 239 RWDFKELLEDGAVDIIQPDISHA----------------------GGITELKKIAAMAEAYDVAL 281 (352)
T ss_pred HHHHHHHHHhCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCcE
Confidence 99999988876 56777765553 27888999999999987664
No 101
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=59.60 E-value=44 Score=34.51 Aligned_cols=146 Identities=17% Similarity=0.241 Sum_probs=89.0
Q ss_pred eEEEEecCC-ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEecccCHHHHHHHHH
Q 016178 151 RVSTEVDAR-LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQ 228 (394)
Q Consensus 151 ~VS~EVdp~-la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~TlVFS~~QA~aaa~ 228 (394)
+|++|-... -..|.+++++|.++|.+.. .+=|-|-+|. .+-.+|++++.++ .|++-+-.=|...-|+.|++
T Consensus 27 Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aG------ceiVRvav~~-~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~ 99 (360)
T PRK00366 27 PIVVQSMTNTDTADVEATVAQIKRLARAG------CEIVRVAVPD-MEAAAALPEIKKQLPVPLVADIHFDYRLALAAAE 99 (360)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcC------CCEEEEccCC-HHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHH
Confidence 899995432 2468899999988887763 3555666663 4556666666665 89999999999999999999
Q ss_pred cCCcEEEechhhhhh---hhhcCCCCcccchhhccC--CCchHHHHHHHHHHHHHcCC-chHHHHhhcCChhhhHhhhCC
Q 016178 229 AGASVIQIFVGRLRD---WARNHSGDPEIDDALKRG--EDPALSLVSKAYNYIHKYGH-KSKLMAAAVRNKQDLFSLLGV 302 (394)
Q Consensus 229 AGa~~ISpFVgRidd---~~~~~~~d~~~~~~~~~~--~d~Gv~~v~~iy~~~~~~g~-~t~vLaAS~R~~~~i~~laG~ 302 (394)
+|+.-+=.-=|-|.. .++.- ++..-..+ -+-|+..=..-.+++++||. ..+-|..|--.--++++..|-
T Consensus 100 ~G~~~iRINPGNig~~~~~v~~v-----v~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f 174 (360)
T PRK00366 100 AGADALRINPGNIGKRDERVREV-----VEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGF 174 (360)
T ss_pred hCCCEEEECCCCCCchHHHHHHH-----HHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 998877665555533 11100 00000000 01122111112344556665 446676666555567777777
Q ss_pred Ceeccc
Q 016178 303 DYIIAP 308 (394)
Q Consensus 303 D~lTip 308 (394)
|-+.++
T Consensus 175 ~~iviS 180 (360)
T PRK00366 175 DDIKIS 180 (360)
T ss_pred CcEEEE
Confidence 766654
No 102
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=59.03 E-value=1.4e+02 Score=27.03 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=57.5
Q ss_pred HHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHc
Q 016178 200 EASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKY 279 (394)
Q Consensus 200 ~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~ 279 (394)
..++.+...+..+-+ -+.+.+++..|.+.|++|+.. |.+.....+ + .. . ...|+...+++.+.+
T Consensus 87 ~~~r~~~~~~~~ig~-s~h~~~e~~~a~~~g~dyi~~--~~v~~t~~k----~----~~-~-~~~g~~~l~~~~~~~--- 150 (196)
T TIGR00693 87 SEARALLGPDKIIGV-STHNLEELAEAEAEGADYIGF--GPIFPTPTK----K----DP-A-PPAGVELLREIAATS--- 150 (196)
T ss_pred HHHHHhcCCCCEEEE-eCCCHHHHHHHhHcCCCEEEE--CCccCCCCC----C----CC-C-CCCCHHHHHHHHHhc---
Confidence 444555555555544 477899999999999999753 443221100 0 00 0 012666666554332
Q ss_pred CCchHHHHhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 280 GHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 280 g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
.+..|++.+.-+.+++-+ .+|+|.+.+.-.+.
T Consensus 151 -~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~ 184 (196)
T TIGR00693 151 -IDIPIVAIGGITLENAAEVLAAGADGVAVVSAIM 184 (196)
T ss_pred -CCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhh
Confidence 235677777777777765 57999988777665
No 103
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=58.80 E-value=1.4e+02 Score=27.09 Aligned_cols=137 Identities=21% Similarity=0.317 Sum_probs=84.4
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh-----hHH-HHHHHHHHcCceeeEecccC-HH
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----QGI-EASRLLESEGIQTHLTFVYS-FA 221 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~-----eGi-~A~~~L~~eGI~vN~TlVFS-~~ 221 (394)
+.++++-+++..-.+.+ .+ ..+..+.+..++++.++++-|+... +.+ ..++.|.+.|+++-+.=+=+ ..
T Consensus 84 ~~~l~inl~~~~l~~~~-~~---~~l~~~l~~~~~~~~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~~ialddfg~~~~ 159 (241)
T smart00052 84 PLRISINLSARQLISPD-LV---PRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDFGTGYS 159 (241)
T ss_pred CceEEEEcCHHHHcCch-HH---HHHHHHHHHcCCCHHHEEEEEeChhhhcChHHHHHHHHHHHHCCCEEEEeCCCCcHH
Confidence 46799999887655532 22 3355555666777789999999842 233 88899999999997765322 22
Q ss_pred HHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--h
Q 016178 222 QAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--L 299 (394)
Q Consensus 222 QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--l 299 (394)
..........++|-.=-+-+.+.. .....-..++.+.++.+..| .+|++..+.+.++... .
T Consensus 160 ~~~~l~~l~~d~iKld~~~~~~~~---------------~~~~~~~~l~~l~~~~~~~~--~~via~gVe~~~~~~~l~~ 222 (241)
T smart00052 160 SLSYLKRLPVDLLKIDKSFVRDLQ---------------TDPEDEAIVQSIIELAQKLG--LQVVAEGVETPEQLDLLRS 222 (241)
T ss_pred HHHHHHhCCCCeEEECHHHHhhhc---------------cChhHHHHHHHHHHHHHHCC--CeEEEecCCCHHHHHHHHH
Confidence 222233345566554333332211 00113455666667666655 6678888888887765 6
Q ss_pred hCCCeec
Q 016178 300 LGVDYII 306 (394)
Q Consensus 300 aG~D~lT 306 (394)
+|||++-
T Consensus 223 ~Gi~~~Q 229 (241)
T smart00052 223 LGCDYGQ 229 (241)
T ss_pred cCCCEEe
Confidence 8998764
No 104
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=58.69 E-value=48 Score=36.49 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=76.5
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhhh-cc--cChhhhhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHH
Q 016178 96 LGICSLPDTIFRNAVDMALADSSCC-EL--ENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVH 172 (394)
Q Consensus 96 ~~~~~nP~ti~~~ai~~al~~~~~~-~l--~~~~~~~~~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~ 172 (394)
.|-..-|+...+..++.+...|... .. .-.+.+ ..+..++.+++.-..+.|.|++..+|. ++.+..++-|+
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~----~~~~ai~~ak~~G~~~~~~i~yt~~p~--~~~~~~~~~a~ 162 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPR----NLETALKAVRKVGAHAQGTLSYTTSPV--HTLQTWVDLAK 162 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHH----HHHHHHHHHHHcCCeEEEEEEEeeCCc--cCHHHHHHHHH
Confidence 3444445445566666666544311 00 011111 113344444443333456788888884 56666777777
Q ss_pred HHHHHhhcCCCCCCcEEEEecC---Ch-hHHHHHHHHHH-----cCceeeEecccCHHHHHHHHHcCCcEEEechhhh
Q 016178 173 DLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLES-----EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 173 ~l~~l~~~~gi~~~nvlIKIPa---T~-eGi~A~~~L~~-----eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
.+.++ |+ +.|+||=.+ ++ +--+.++.|.+ -|+|++-|+=....-+++|++||+.+|.-=++=+
T Consensus 163 ~l~~~----Ga--d~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~gl 234 (593)
T PRK14040 163 QLEDM----GV--DSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSM 234 (593)
T ss_pred HHHHc----CC--CEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccc
Confidence 66654 44 678877332 22 22333344433 3789999999999999999999998766554433
No 105
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.87 E-value=26 Score=33.14 Aligned_cols=107 Identities=21% Similarity=0.232 Sum_probs=73.4
Q ss_pred CcEEEEecCCh-------hHHHHHHHHHHcCceeeEecc---c---CHHHHHH-HHHcCCcEEEechhhhhhhhhcCCCC
Q 016178 186 ERLLFKIPSTW-------QGIEASRLLESEGIQTHLTFV---Y---SFAQAAA-AAQAGASVIQIFVGRLRDWARNHSGD 251 (394)
Q Consensus 186 ~nvlIKIPaT~-------eGi~A~~~L~~eGI~vN~TlV---F---S~~QA~a-aa~AGa~~ISpFVgRidd~~~~~~~d 251 (394)
+=|=||=|+-- -=|+.++++..+.-.+.+|+= | +..||.. |+-+|+.||-+=.--+..
T Consensus 22 dIiDVKNP~EGSLGANFPWvIr~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~GaDYiKVGLYg~kn-------- 93 (235)
T COG1891 22 DIIDVKNPAEGSLGANFPWVIREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGADYIKVGLYGTKN-------- 93 (235)
T ss_pred ceEeccCcccCcccCCChHHHHHHHHhCccceeeeeeecCCCCCCchHHHHHHHhHhhCCceEEEeeccccc--------
Confidence 34556766422 238899999888888888863 2 3444443 456799998653221111
Q ss_pred cccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhh-----------HhhhCCCeecccHH
Q 016178 252 PEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL-----------FSLLGVDYIIAPLK 310 (394)
Q Consensus 252 ~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i-----------~~laG~D~lTip~~ 310 (394)
+..++..++.+.+..|.+++..+|.+|......++ .+.+|||...+--.
T Consensus 94 ----------~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvDTa 153 (235)
T COG1891 94 ----------EEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVDTA 153 (235)
T ss_pred ----------HHHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEecc
Confidence 12478899999999999999999999998876555 34799998866443
No 106
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.41 E-value=19 Score=35.74 Aligned_cols=94 Identities=26% Similarity=0.291 Sum_probs=61.6
Q ss_pred CcEEEE------ecCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhc
Q 016178 186 ERLLFK------IPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259 (394)
Q Consensus 186 ~nvlIK------IPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~ 259 (394)
+-+||| .....++++++++.. .+..+-+. +-+.+|+..|+++|++||- +|.
T Consensus 161 d~ilikdnHi~~~g~v~~av~~~r~~~-~~~~I~VE-v~tleea~eA~~~gaD~I~-----LD~---------------- 217 (277)
T PRK05742 161 DAFLIKENHIAACGGIAQAVAAAHRIA-PGKPVEVE-VESLDELRQALAAGADIVM-----LDE---------------- 217 (277)
T ss_pred ccEEecHHHHHHhCCHHHHHHHHHHhC-CCCeEEEE-eCCHHHHHHHHHcCCCEEE-----ECC----------------
Confidence 346666 223346677777763 34455444 5799999999999999992 211
Q ss_pred cCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccH
Q 016178 260 RGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (394)
Q Consensus 260 ~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~ 309 (394)
.+...++++.++.+ .+..+.+...-|.+++.+ .+|+|.+.+..
T Consensus 218 ----~~~e~l~~~v~~~~---~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 218 ----LSLDDMREAVRLTA---GRAKLEASGGINESTLRVIAETGVDYISIGA 262 (277)
T ss_pred ----CCHHHHHHHHHHhC---CCCcEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 25566676666543 245555555778888866 69999987654
No 107
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=57.35 E-value=25 Score=32.96 Aligned_cols=90 Identities=22% Similarity=0.224 Sum_probs=50.7
Q ss_pred CChhHHHHHHHHHHcCceeeEec--cc---------CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCC
Q 016178 194 STWQGIEASRLLESEGIQTHLTF--VY---------SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGE 262 (394)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~Tl--VF---------S~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~ 262 (394)
.+.+-++.++.+ .+|++.... -| +.+|...|.++|+.+|.+-..-..+
T Consensus 47 ~~~~~~~~i~~~--~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~------------------- 105 (219)
T cd04729 47 NGVEDIRAIRAR--VDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR------------------- 105 (219)
T ss_pred CCHHHHHHHHHh--CCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC-------------------
Confidence 455667777664 355553200 11 3569999999999988885422210
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecc
Q 016178 263 DPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIA 307 (394)
Q Consensus 263 d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTi 307 (394)
|.-....++.+..++++ +..++ ....+++++.. .+|+|++.+
T Consensus 106 -p~~~~~~~~i~~~~~~g-~~~ii-v~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 106 -PDGETLAELIKRIHEEY-NCLLM-ADISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred -CCCcCHHHHHHHHHHHh-CCeEE-EECCCHHHHHHHHHcCCCEEEc
Confidence 11012334555555555 33333 35566776654 589999854
No 108
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=57.14 E-value=1.2e+02 Score=30.43 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=75.9
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEe-cccCH
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYSF 220 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lVFS~ 220 (394)
.+.+.+...+.+-||++-+++.+..++-++++.. +++ .+|-=|.-.+.+...+.|.+. +|++.+- -+++.
T Consensus 163 avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~----~~~----~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~~~~~ 234 (341)
T cd03327 163 AIREAVGYDVDLMLDCYMSWNLNYAIKMARALEK----YEL----RWIEEPLIPDDIEGYAELKKATGIPISTGEHEYTV 234 (341)
T ss_pred HHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhh----cCC----ccccCCCCccCHHHHHHHHhcCCCCeEeccCccCH
Confidence 4444454457778888877887655555444433 222 356666666677777788766 7776654 46788
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 221 ~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
.+.....++| +.++.|=++|+ -|+.-++++.++-+.+|.+.
T Consensus 235 ~~~~~~i~~~a~d~i~~d~~~~----------------------GGit~~~~i~~~A~~~g~~~ 276 (341)
T cd03327 235 YGFKRLLEGRAVDILQPDVNWV----------------------GGITELKKIAALAEAYGVPV 276 (341)
T ss_pred HHHHHHHHcCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCee
Confidence 9888888875 67877766654 27888999999988887653
No 109
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=56.63 E-value=77 Score=31.02 Aligned_cols=134 Identities=14% Similarity=0.219 Sum_probs=78.9
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhH-HHHHHHHHHcCc--eeeEecccCHHHHHHHHHcCCcEEEe
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG-IEASRLLESEGI--QTHLTFVYSFAQAAAAAQAGASVIQI 236 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eG-i~A~~~L~~eGI--~vN~TlVFS~~QA~aaa~AGa~~ISp 236 (394)
..+.++..++-++.|.++ || +.|=+=-|.+-++ ..+++.+.+.+. .+-+-+....+....|.++|+..|..
T Consensus 17 ~~~s~~~k~~i~~~L~~~----Gv--~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 17 AFFDTEDKIEIAKALDAF----GV--DYIELTSPAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDL 90 (262)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEE
Confidence 456677666666666554 55 3444444766544 456677765553 33222356777788888999999888
Q ss_pred chhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHH-HhhcCCh-hhhHh------hhCCCeeccc
Q 016178 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNK-QDLFS------LLGVDYIIAP 308 (394)
Q Consensus 237 FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vL-aAS~R~~-~~i~~------laG~D~lTip 308 (394)
|++==+-+.+.+.+ ...+..+..+.++.++.+.+|++..+- ..++|.. +.+.+ .+|+|.+.++
T Consensus 91 ~~~~S~~~~~~~~~---------~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 91 VFGTSPFLREASHG---------KSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred EEecCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 87533222221111 011235777888888989888765433 3355553 33332 4688887664
No 110
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=56.53 E-value=51 Score=33.97 Aligned_cols=86 Identities=16% Similarity=0.107 Sum_probs=61.9
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcC----------CCCCCcEEEEecCC------------hhHH
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEI----------DVPPERLLFKIPST------------WQGI 199 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~----------gi~~~nvlIKIPaT------------~eGi 199 (394)
+.|+.+-+.+.-+=+-|.-.+|.+..++-|++|.++.+++ ++.+||--+.--.- .+||
T Consensus 44 ~~Il~g~d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL 123 (349)
T PRK09261 44 HNILHGKDDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDINDGL 123 (349)
T ss_pred HHHHcCCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHHHH
Confidence 4778888889999999999999999999999999987642 22222222111121 5899
Q ss_pred HHHHHH----HHcCceeeEecccCHHHHHHHHH
Q 016178 200 EASRLL----ESEGIQTHLTFVYSFAQAAAAAQ 228 (394)
Q Consensus 200 ~A~~~L----~~eGI~vN~TlVFS~~QA~aaa~ 228 (394)
+.+++| .+.|+++ +|-+..+.+....++
T Consensus 124 ~~~R~ll~~~~e~Glpv-atE~ld~~~~~y~~d 155 (349)
T PRK09261 124 RIARKLLLDINELGLPA-ATEFLDPITPQYIAD 155 (349)
T ss_pred HHHHHHHHHHHHhCCCe-EEEecccccHHHHHh
Confidence 999998 5569998 777777666655543
No 111
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=56.45 E-value=44 Score=33.74 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHcC--ceeeEecccCHHHHHHHHHcCCcEEEech-------hhhhhhhhcCCCCcccchhhccCCCchHH
Q 016178 197 QGIEASRLLESEG--IQTHLTFVYSFAQAAAAAQAGASVIQIFV-------GRLRDWARNHSGDPEIDDALKRGEDPALS 267 (394)
Q Consensus 197 eGi~A~~~L~~eG--I~vN~TlVFS~~QA~aaa~AGa~~ISpFV-------gRidd~~~~~~~d~~~~~~~~~~~d~Gv~ 267 (394)
.-++.++.+.+.+ +.+-+--+.+.++|..+.++|+++|..=+ +|... ..+ .|-+.
T Consensus 121 ~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~---------------g~g-~p~~~ 184 (325)
T cd00381 121 YVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVT---------------GVG-VPQAT 184 (325)
T ss_pred HHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeC---------------CCC-CCHHH
Confidence 4477788888776 77777778999999999999999887522 22110 001 23455
Q ss_pred HHHHHHHHHHHcCCchHHHHh-hcCChhhhHh--hhCCCeecccHHHH
Q 016178 268 LVSKAYNYIHKYGHKSKLMAA-AVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 268 ~v~~iy~~~~~~g~~t~vLaA-S~R~~~~i~~--laG~D~lTip~~vl 312 (394)
.+.++.++.+.++ ..|+++ .+++..++.+ .+|+|.+.+.-.++
T Consensus 185 ~i~~v~~~~~~~~--vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa 230 (325)
T cd00381 185 AVADVAAAARDYG--VPVIADGGIRTSGDIVKALAAGADAVMLGSLLA 230 (325)
T ss_pred HHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHcCCCEEEecchhc
Confidence 5666666665543 445543 5677888876 59999988865543
No 112
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.17 E-value=10 Score=38.03 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=57.0
Q ss_pred HHHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHH
Q 016178 200 EASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277 (394)
Q Consensus 200 ~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~ 277 (394)
+|++.+.+. ..++ .-.+=|++|+..|+++|+++|- +|+. -...++++..+++
T Consensus 188 ~ai~~~r~~~~~~kI-eVEv~tl~ea~eal~~gaDiI~-----LDnm--------------------~~e~vk~av~~~~ 241 (289)
T PRK07896 188 AALRAVRAAAPDLPC-EVEVDSLEQLDEVLAEGAELVL-----LDNF--------------------PVWQTQEAVQRRD 241 (289)
T ss_pred HHHHHHHHhCCCCCE-EEEcCCHHHHHHHHHcCCCEEE-----eCCC--------------------CHHHHHHHHHHHh
Confidence 555555542 2232 3345699999999999998873 2221 2566788888777
Q ss_pred HcCCchHHHHhhcCChhhhHh--hhCCCeecccH
Q 016178 278 KYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (394)
Q Consensus 278 ~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~ 309 (394)
..+.+..+.++..-|.+++.+ .+|+|++.+..
T Consensus 242 ~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 242 ARAPTVLLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred ccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 665566555666788898876 79999987654
No 113
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=55.97 E-value=1.4e+02 Score=30.80 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=81.4
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEec-
Q 016178 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF- 216 (394)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl- 216 (394)
+..+.+.+.+..-+.+-||++-+.+.+ +|.++.+..+++++ .+|-=|..+..+...++|.+. +|++.+.=
T Consensus 194 ~~v~avre~~G~~~~l~vDaN~~w~~~----~A~~~~~~l~~~~l----~~iEeP~~~~d~~~~~~L~~~~~iPIa~dEs 265 (404)
T PRK15072 194 KLFEAVRNKFGFDLHLLHDVHHRLTPI----EAARLGKSLEPYRL----FWLEDPTPAENQEAFRLIRQHTTTPLAVGEV 265 (404)
T ss_pred HHHHHHHhhhCCCceEEEECCCCCCHH----HHHHHHHhccccCC----cEEECCCCccCHHHHHHHHhcCCCCEEeCcC
Confidence 344455666655678889998778765 45555444443332 467778777778888888776 78876654
Q ss_pred ccCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 217 VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 217 VFS~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
+|+..+.....++| +.++.|=++|+ -|+..++++.++-+.+|.+.
T Consensus 266 ~~~~~~~~~li~~~a~dii~~d~~~~----------------------GGit~~~kia~lA~~~gi~~ 311 (404)
T PRK15072 266 FNSIWDCKQLIEEQLIDYIRTTVTHA----------------------GGITHLRRIADFAALYQVRT 311 (404)
T ss_pred ccCHHHHHHHHHcCCCCEEecCcccc----------------------CcHHHHHHHHHHHHHcCCce
Confidence 68999999999887 57887766554 27888888888888877554
No 114
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=55.87 E-value=1.3e+02 Score=30.10 Aligned_cols=110 Identities=21% Similarity=0.229 Sum_probs=64.9
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeE-ecccCH
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHL-TFVYSF 220 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~-TlVFS~ 220 (394)
.+.+.+...+-+=||++-+.+.++.++ +.+..++.|+ .+|==|.-..-+..++.|.+. +|++-+ --++++
T Consensus 181 ~ir~~~g~~~~l~vDaN~~~~~~~a~~----~~~~l~~~~i----~~iEqP~~~~~~~~~~~l~~~~~ipi~~dE~~~~~ 252 (357)
T cd03316 181 AVREAVGPDVDLMVDANGRWDLAEAIR----LARALEEYDL----FWFEEPVPPDDLEGLARLRQATSVPIAAGENLYTR 252 (357)
T ss_pred HHHHhhCCCCEEEEECCCCCCHHHHHH----HHHHhCccCC----CeEcCCCCccCHHHHHHHHHhCCCCEEeccccccH
Confidence 444444333444556655566544443 4333333333 244445544445556666655 677665 347888
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCc
Q 016178 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (394)
Q Consensus 221 ~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~ 282 (394)
.++..+.+.| +.++.+=+.++ -|+.-++++.++.+.+|.+
T Consensus 253 ~~~~~~i~~~~~d~v~~k~~~~----------------------GGi~~~~~i~~~a~~~g~~ 293 (357)
T cd03316 253 WEFRDLLEAGAVDIIQPDVTKV----------------------GGITEAKKIAALAEAHGVR 293 (357)
T ss_pred HHHHHHHHhCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCe
Confidence 8888888765 56666654443 2788888999988888765
No 115
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=55.34 E-value=2.2e+02 Score=28.26 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=54.3
Q ss_pred hhhhhHHHHHHHHhcCC---CCeEEEEecCCcc-------------CCHHHHHHHHHHHHHHhhcCCCCCCcEEEE-ecC
Q 016178 132 FFNKALVNVGGDLAKMV---PGRVSTEVDARLA-------------YDTHGIIRKVHDLLKLYSEIDVPPERLLFK-IPS 194 (394)
Q Consensus 132 ~~~~~~v~~g~eil~~v---~G~VS~EVdp~la-------------~D~e~~I~eA~~l~~l~~~~gi~~~nvlIK-IPa 194 (394)
.+.+..++++++..+.. +.+|.--+.|.-+ .+.+++.+.-++.++.+.+.|+ +-+++- +|.
T Consensus 87 ~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gv--D~i~~ET~~~ 164 (304)
T PRK09485 87 ELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLADGSEYRGDYGLSEEELQDFHRPRIEALAEAGA--DLLACETIPN 164 (304)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCC--CEEEEeccCC
Confidence 45566777777776543 4577777776432 1345555554555666655566 677775 899
Q ss_pred ChhHHHHHHHHHHc--CceeeEeccc
Q 016178 195 TWQGIEASRLLESE--GIQTHLTFVY 218 (394)
Q Consensus 195 T~eGi~A~~~L~~e--GI~vN~TlVF 218 (394)
..|-..+++.+.+. ++++-+++.|
T Consensus 165 ~~E~~~~~~~~~~~~~~~pv~is~~~ 190 (304)
T PRK09485 165 LDEAEALVELLKEEFPGVPAWLSFTL 190 (304)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99888888877755 6666555443
No 116
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=55.31 E-value=1e+02 Score=29.48 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=90.2
Q ss_pred hhHHHHHHHHhcCCCCeEEEEecCCccCC-HHHHHHHHHHHHHHh-hcCCCCCCcEEEEecCC----h-hHHHHHHHHHH
Q 016178 135 KALVNVGGDLAKMVPGRVSTEVDARLAYD-THGIIRKVHDLLKLY-SEIDVPPERLLFKIPST----W-QGIEASRLLES 207 (394)
Q Consensus 135 ~~~v~~g~eil~~v~G~VS~EVdp~la~D-~e~~I~eA~~l~~l~-~~~gi~~~nvlIKIPaT----~-eGi~A~~~L~~ 207 (394)
-.++.++++.++.-+-.|..=|+=.+..+ ++.-+.++++.++.| .++ .++|-+.+- | .-.+.++.+.+
T Consensus 43 p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~Ei-----D~Vin~~~~~~g~~~~v~~ei~~v~~ 117 (221)
T PRK00507 43 PSYVKLAAELLKGSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADEI-----DMVINIGALKSGDWDAVEADIRAVVE 117 (221)
T ss_pred HHHHHHHHHHhCCCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCceE-----eeeccHHHhcCCCHHHHHHHHHHHHH
Confidence 34666777777655446666665445554 455567777777765 222 244433322 2 22333444333
Q ss_pred --cCceeeE---ecccCHHHHHH----HHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHH
Q 016178 208 --EGIQTHL---TFVYSFAQAAA----AAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHK 278 (394)
Q Consensus 208 --eGI~vN~---TlVFS~~QA~a----aa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~ 278 (394)
.|+.+=+ |-..+-+|-.. |.++|+++|----|.-. .| .-+..++.+++..
T Consensus 118 ~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~-----------------~g--at~~~v~~m~~~~-- 176 (221)
T PRK00507 118 AAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFST-----------------GG--ATVEDVKLMRETV-- 176 (221)
T ss_pred hcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCC-----------------CC--CCHHHHHHHHHHh--
Confidence 3666666 77778888544 45779987766555310 01 2344555554443
Q ss_pred cCCchHHHHh-hcCChhhhHh--hhCCCeec--ccHHHHHHH
Q 016178 279 YGHKSKLMAA-AVRNKQDLFS--LLGVDYII--APLKVLQSL 315 (394)
Q Consensus 279 ~g~~t~vLaA-S~R~~~~i~~--laG~D~lT--ip~~vl~~L 315 (394)
+.+..|.++ .+|+.+++.+ .+|++.+= -...+++++
T Consensus 177 -~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~~~i~~~~ 217 (221)
T PRK00507 177 -GPRVGVKASGGIRTLEDALAMIEAGATRLGTSAGVAILKGL 217 (221)
T ss_pred -CCCceEEeeCCcCCHHHHHHHHHcCcceEccCcHHHHHhcc
Confidence 556777766 5899999998 59999983 335556554
No 117
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=55.12 E-value=59 Score=33.60 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=59.3
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcC----------CCCCCcEEEEecCC------------hhHH
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEI----------DVPPERLLFKIPST------------WQGI 199 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~----------gi~~~nvlIKIPaT------------~eGi 199 (394)
+.|+.+.+.+.-+=+-|...+|.+..++-|++|.++.+++ ++.+||--+.--.. .+||
T Consensus 45 ~~Il~g~d~rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL 124 (353)
T PRK12755 45 ADILHGRDDRLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGL 124 (353)
T ss_pred HHHhcCCCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHH
Confidence 3778888889999999999999999999999999987542 22223322221122 5788
Q ss_pred HHHHHH----HHcCceeeEecccCHHHHHHHH
Q 016178 200 EASRLL----ESEGIQTHLTFVYSFAQAAAAA 227 (394)
Q Consensus 200 ~A~~~L----~~eGI~vN~TlVFS~~QA~aaa 227 (394)
+.+|+| .+.|+++ +|-+..+.+....+
T Consensus 125 ~~~R~ll~~~~e~Glp~-atE~ld~~~~~y~~ 155 (353)
T PRK12755 125 RIARKLLLDLVELGLPL-ATEALDPISPQYLG 155 (353)
T ss_pred HHHHHHHHHHHHhCCCE-EEEecCcccHHHHH
Confidence 887777 4558888 66666655554444
No 118
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=55.05 E-value=78 Score=31.62 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=91.1
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHH-HcCceeeEecccCHHHHHHHH
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLE-SEGIQTHLTFVYSFAQAAAAA 227 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~-~eGI~vN~TlVFS~~QA~aaa 227 (394)
.|+=|+++|.. ..+.++.++.++++.++++..|++ |-..|- +.+- ..++ +..+..-+++||..+.
T Consensus 98 ~GftSVm~d~S-~l~~eEni~~t~~v~~~a~~~gv~---vE~ElG---------~i~g~ed~~-~g~s~~t~peea~~f~ 163 (293)
T PRK07315 98 VGYTSIMFDGS-HLPVEENLKLAKEVVEKAHAKGIS---VEAEVG---------TIGGEEDGI-IGKGELAPIEDAKAMV 163 (293)
T ss_pred cCCCEEEEcCC-CCCHHHHHHHHHHHHHHHHHcCCE---EEEecC---------cccCcCccc-cCccCCCCHHHHHHHH
Confidence 48899999985 478899999999999999877663 222222 1111 1121 1122246999999999
Q ss_pred HcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCee
Q 016178 228 QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYI 305 (394)
Q Consensus 228 ~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~l 305 (394)
+-|++|+++=+|-+.-.|+... + .-++...++|.+... +.+.-+.+.|.-+.+++.. ..|++-+
T Consensus 164 ~tgvD~LAv~iG~vHG~y~t~~--k----------~l~~e~L~~i~~~~~--~iPlVlhGGSGi~~e~~~~~i~~Gi~Ki 229 (293)
T PRK07315 164 ETGIDFLAAGIGNIHGPYPENW--E----------GLDLDHLEKLTEAVP--GFPIVLHGGSGIPDDQIQEAIKLGVAKV 229 (293)
T ss_pred HcCCCEEeeccccccccCCCCC--C----------cCCHHHHHHHHHhcc--CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 9999999999999854442100 0 135666666655441 2456666888888888876 5888877
Q ss_pred cccHHHHH
Q 016178 306 IAPLKVLQ 313 (394)
Q Consensus 306 Tip~~vl~ 313 (394)
-+--.+..
T Consensus 230 Nv~T~i~~ 237 (293)
T PRK07315 230 NVNTECQI 237 (293)
T ss_pred EEccHHHH
Confidence 66666553
No 119
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=54.79 E-value=47 Score=30.48 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=62.8
Q ss_pred cEEEEecCChhH---HHHHHHHHHcCceeeEec---ccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhcc
Q 016178 187 RLLFKIPSTWQG---IEASRLLESEGIQTHLTF---VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKR 260 (394)
Q Consensus 187 nvlIKIPaT~eG---i~A~~~L~~eGI~vN~Tl---VFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~ 260 (394)
..++ +++...+ -+.++...+.|+.+-+-+ --..+++..+.+.|++|+..+-|.-..-+
T Consensus 78 d~i~-vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~--------------- 141 (206)
T TIGR03128 78 DIVT-VLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAK--------------- 141 (206)
T ss_pred CEEE-EeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccC---------------
Confidence 4443 6666533 355666677799987543 22358899899999999988643221100
Q ss_pred CCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 261 GEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 261 ~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
+ ..++..++++.+.+. ...+++.+.-+.+++-+ .+|+|.+.+.-.++
T Consensus 142 ~-~~~~~~i~~l~~~~~----~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 142 G-QNPFEDLQTILKLVK----EARVAVAGGINLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred C-CCCHHHHHHHHHhcC----CCcEEEECCcCHHHHHHHHHcCCCEEEEeehhc
Confidence 0 124555555555443 23455456666666655 58899887765543
No 120
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=54.37 E-value=61 Score=34.01 Aligned_cols=139 Identities=20% Similarity=0.240 Sum_probs=83.9
Q ss_pred CCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhH-HHHHHHHH-HcCc--eeeE-ecccCHH-HHHHHHHcCC
Q 016178 158 ARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG-IEASRLLE-SEGI--QTHL-TFVYSFA-QAAAAAQAGA 231 (394)
Q Consensus 158 p~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eG-i~A~~~L~-~eGI--~vN~-TlVFS~~-QA~aaa~AGa 231 (394)
|..+++.++-++-|+.|-++ |+ +.+=+=-|+..+| .++++.+. ..|+ .+.. .+..... -..++.++|.
T Consensus 17 ~g~~~s~e~Ki~Ia~~Ld~l----Gv--~~IE~g~p~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~ 90 (409)
T COG0119 17 PGVSFSVEEKIRIAKALDDL----GV--DYIEAGFPVASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGV 90 (409)
T ss_pred CCCcCCHHHHHHHHHHHHHc----CC--CEEEEeCCcCChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCC
Confidence 44566777666666666654 56 7888899986655 44444444 5565 2222 1222222 2334557799
Q ss_pred cEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchH--HHHhhcCChhhhHh------hhCCC
Q 016178 232 SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK--LMAAAVRNKQDLFS------LLGVD 303 (394)
Q Consensus 232 ~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~--vLaAS~R~~~~i~~------laG~D 303 (394)
..|..|++--+-+.+.+..- ....-+..+++..+|.+.+|.++. ..=++-.+++.+++ ..||+
T Consensus 91 ~~i~if~~tSd~h~~~~~~~---------t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~ 161 (409)
T COG0119 91 DRIHIFIATSDLHLRYKLKK---------TREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGAD 161 (409)
T ss_pred CEEEEEEcCCHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCc
Confidence 99999988777665433321 112357888999999999996665 33444344444443 46788
Q ss_pred eecccHHH
Q 016178 304 YIIAPLKV 311 (394)
Q Consensus 304 ~lTip~~v 311 (394)
.+.+|.++
T Consensus 162 ~i~l~DTv 169 (409)
T COG0119 162 RINLPDTV 169 (409)
T ss_pred EEEECCCc
Confidence 87665543
No 121
>PRK09389 (R)-citramalate synthase; Provisional
Probab=54.31 E-value=72 Score=34.18 Aligned_cols=137 Identities=16% Similarity=0.100 Sum_probs=81.9
Q ss_pred CccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChh-HHHHHHHHHHcCceeeEecccC--HHHHHHHHHcCCcEEE
Q 016178 159 RLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ-GIEASRLLESEGIQTHLTFVYS--FAQAAAAAQAGASVIQ 235 (394)
Q Consensus 159 ~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~e-Gi~A~~~L~~eGI~vN~TlVFS--~~QA~aaa~AGa~~IS 235 (394)
...+++++-++-|+.|.++ || +.|=+=.|+..+ -.++++.+.+.+.++.++..-. ..-..++.++|+..|.
T Consensus 18 g~~~s~e~K~~ia~~L~~~----Gv--~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~ 91 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDEL----GV--DVIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVH 91 (488)
T ss_pred CCCcCHHHHHHHHHHHHHc----CC--CEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEE
Confidence 3567777777766666665 55 566666676553 4777788877766544443222 3334557788999999
Q ss_pred echhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHH-HhhcCC-hhhhHh------hhCCCeecc
Q 016178 236 IFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRN-KQDLFS------LLGVDYIIA 307 (394)
Q Consensus 236 pFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vL-aAS~R~-~~~i~~------laG~D~lTi 307 (394)
.|++--+-+.+.+... ..+..+..+.++.+|.+++|.+..+= .-+.|. ++.+.+ .+|+|.+.+
T Consensus 92 i~~~~Sd~h~~~~l~~---------s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 92 LVVPTSDLHIEYKLKK---------TREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred EEEccCHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 9986655544332221 11246778888888888887643321 112333 333322 579998876
Q ss_pred cHH
Q 016178 308 PLK 310 (394)
Q Consensus 308 p~~ 310 (394)
|.+
T Consensus 163 ~DT 165 (488)
T PRK09389 163 CDT 165 (488)
T ss_pred ecC
Confidence 544
No 122
>PRK05660 HemN family oxidoreductase; Provisional
Probab=54.18 E-value=1.2e+02 Score=31.11 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=51.6
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eeEe
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THLT 215 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~T 215 (394)
.|++|++|..-.. ++ .+..++.|+ .||-|-|-+-. +-++|++.+.+.|+. +|+.
T Consensus 95 eit~e~np~~l~~-----e~----l~~Lk~~Gv--~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~d 163 (378)
T PRK05660 95 EITMEANPGTVEA-----DR----FVGYQRAGV--NRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLD 163 (378)
T ss_pred EEEEEeCcCcCCH-----HH----HHHHHHcCC--CEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 6888888864322 22 222334455 46666665533 457889999999995 7999
Q ss_pred cccCHH-H--------HHHHHHcCCcEEEechhhhh
Q 016178 216 FVYSFA-Q--------AAAAAQAGASVIQIFVGRLR 242 (394)
Q Consensus 216 lVFS~~-Q--------A~aaa~AGa~~ISpFVgRid 242 (394)
++|.+. | ...+.+.|+.-||.|.=.+.
T Consensus 164 li~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~ 199 (378)
T PRK05660 164 LMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIE 199 (378)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEec
Confidence 999832 2 22345668888887755443
No 123
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=53.70 E-value=44 Score=35.14 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=50.1
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eeE
Q 016178 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THL 214 (394)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~ 214 (394)
..+++|++|..- +++.++ +.++.|+ .+|-|-|=+.. +-++|++.+.+.|+. +|+
T Consensus 139 ~e~tie~~p~~l--t~e~l~-------~L~~~G~--~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~ 207 (453)
T PRK13347 139 AEIAVEIDPRTV--TAEMLQ-------ALAALGF--NRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINF 207 (453)
T ss_pred ceEEEEeccccC--CHHHHH-------HHHHcCC--CEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 479999999753 222222 2333444 46666665543 458899999999996 999
Q ss_pred ecccC-HHHH--------HHHHHcCCcEEEec
Q 016178 215 TFVYS-FAQA--------AAAAQAGASVIQIF 237 (394)
Q Consensus 215 TlVFS-~~QA--------~aaa~AGa~~ISpF 237 (394)
.++|. +.|- ..+.+.|+.-|+.|
T Consensus 208 dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y 239 (453)
T PRK13347 208 DLIYGLPHQTVESFRETLDKVIALSPDRIAVF 239 (453)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 99997 2232 22446688877776
No 124
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=53.08 E-value=2.6e+02 Score=28.28 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHcCc-eeeEecccC-----HHHHHH----HHHcCCcEEEechhhh
Q 016178 197 QGIEASRLLESEGI-QTHLTFVYS-----FAQAAA----AAQAGASVIQIFVGRL 241 (394)
Q Consensus 197 eGi~A~~~L~~eGI-~vN~TlVFS-----~~QA~a----aa~AGa~~ISpFVgRi 241 (394)
+-++|++.+.+.|+ ++|+.++|. .+.... +.+.|+.-||.|.=.+
T Consensus 135 ~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~ 189 (350)
T PRK08446 135 QIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTI 189 (350)
T ss_pred HHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEecccee
Confidence 56889999999999 599999995 333222 4456888887776443
No 125
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=52.09 E-value=1.8e+02 Score=30.03 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=71.0
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEe-cccC
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYS 219 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lVFS 219 (394)
+.+.+.+ |.+.+-||++-+++.+. |.++.+..++ ++ .+|-=|.. .+..++.|.+. ++++-+- .+++
T Consensus 205 ~avRea~-~~~~l~vDaN~~w~~~~----A~~~~~~l~~-~l----~~iEeP~~--d~~~~~~L~~~~~~PIa~dEs~~~ 272 (395)
T cd03323 205 KALAEAF-PGARLRLDPNGAWSLET----AIRLAKELEG-VL----AYLEDPCG--GREGMAEFRRATGLPLATNMIVTD 272 (395)
T ss_pred HHHHHhC-CCCcEEEeCCCCcCHHH----HHHHHHhcCc-CC----CEEECCCC--CHHHHHHHHHhcCCCEEcCCcccC
Confidence 3445556 35888889888888764 4444444333 22 24554443 55666666655 5665443 5788
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 220 ~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
..++..+.++| +.++.|=++|+ -|+.-++++.++-+.+|.+.
T Consensus 273 ~~~~~~~i~~~avdil~~d~~~~----------------------GGit~~~kia~~A~~~gi~~ 315 (395)
T cd03323 273 FRQLGHAIQLNAVDIPLADHHFW----------------------GGMRGSVRVAQVCETWGLGW 315 (395)
T ss_pred HHHHHHHHHcCCCcEEeeccccc----------------------cCHHHHHHHHHHHHHcCCeE
Confidence 99999988887 67777766654 27888889999888887654
No 126
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=52.07 E-value=1.4e+02 Score=29.96 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=76.6
Q ss_pred EEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEE-----ecCC----------hhHHHHHHHHHHc-CceeeEe
Q 016178 152 VSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK-----IPST----------WQGIEASRLLESE-GIQTHLT 215 (394)
Q Consensus 152 VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIK-----IPaT----------~eGi~A~~~L~~e-GI~vN~T 215 (394)
..+=--|....+.+.+++-|+++.++.++.|+ +++.| =|=| ++|++-.++..++ |++| +|
T Consensus 17 ~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~---~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~Glpv-vT 92 (281)
T PRK12457 17 FVLFGGINVLESLDFTLDVCGEYVEVTRKLGI---PFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPV-IT 92 (281)
T ss_pred eEEEecCCcccCHHHHHHHHHHHHHHHHHCCC---cEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCce-EE
Confidence 33434455556688899999999998888877 45666 1222 4788888888877 9999 89
Q ss_pred cccCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCC
Q 016178 216 FVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGH 281 (394)
Q Consensus 216 lVFS~~QA~aaa~AGa~~ISp--FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~ 281 (394)
=|....|+..+++. ++++.+ |--|=.|..+.... ....-.+.+|.-........+.+|+...|.
T Consensus 93 eV~~~~~~~~~ae~-vDilQIgAr~~rntdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn 158 (281)
T PRK12457 93 DVHEVEQAAPVAEV-ADVLQVPAFLARQTDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGN 158 (281)
T ss_pred EeCCHHHHHHHhhh-CeEEeeCchhhchHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCC
Confidence 99999999999987 555544 23333344332111 000001123311123455666667776653
No 127
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.97 E-value=21 Score=35.52 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=49.6
Q ss_pred ccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcC--CchHHHHhhcCChh
Q 016178 217 VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYG--HKSKLMAAAVRNKQ 294 (394)
Q Consensus 217 VFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g--~~t~vLaAS~R~~~ 294 (394)
+=+++|+..|+++|+++|- +|. -....++++..+++..+ .+.++.++..-|.+
T Consensus 189 v~~leea~~a~~agaDiI~-----LDn--------------------~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ 243 (278)
T PRK08385 189 VESLEDALKAAKAGADIIM-----LDN--------------------MTPEEIREVIEALKREGLRERVKIEVSGGITPE 243 (278)
T ss_pred eCCHHHHHHHHHcCcCEEE-----ECC--------------------CCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHH
Confidence 3499999999999998662 221 24567888888887755 45555566677888
Q ss_pred hhHh--hhCCCeecccH
Q 016178 295 DLFS--LLGVDYIIAPL 309 (394)
Q Consensus 295 ~i~~--laG~D~lTip~ 309 (394)
++.+ .+|+|++.+..
T Consensus 244 ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 244 NIEEYAKLDVDVISLGA 260 (278)
T ss_pred HHHHHHHcCCCEEEeCh
Confidence 8876 68999986654
No 128
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=51.88 E-value=2e+02 Score=29.67 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=78.2
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEe-cccCH
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYSF 220 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lVFS~ 220 (394)
.+.+.+...+.+-||++-++|.+..++-++.+ +++|+ ..|-=|.-++-+...+.|.+. ++++-+- -+|+.
T Consensus 197 avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l----~~~~~----~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~ 268 (385)
T cd03326 197 AALDVLGDGARLAVDANGRFDLETAIAYAKAL----APYGL----RWYEEPGDPLDYALQAELADHYDGPIATGENLFSL 268 (385)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHh----hCcCC----CEEECCCCccCHHHHHHHHhhCCCCEEcCCCcCCH
Confidence 44444544678888888888876555544444 33322 367767777777778888776 6776554 46899
Q ss_pred HHHHHHHHcCC-----cEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCc
Q 016178 221 AQAAAAAQAGA-----SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (394)
Q Consensus 221 ~QA~aaa~AGa-----~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~ 282 (394)
.++....+.|+ .++.|=++|+ -|+.-++++.++.+.+|.+
T Consensus 269 ~~~~~li~~~a~~~~~div~~d~~~~----------------------GGit~~~kia~lA~a~gi~ 313 (385)
T cd03326 269 QDARNLLRYGGMRPDRDVLQFDPGLS----------------------YGLPEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHhCCccccCCEEEeCchhh----------------------CCHHHHHHHHHHHHHcCCC
Confidence 99999988874 7998887775 2888999999998888865
No 129
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=51.61 E-value=67 Score=33.20 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCce-eeEecccCHH-HHHH--------HHHcCCcEEEechhhh
Q 016178 197 QGIEASRLLESEGIQ-THLTFVYSFA-QAAA--------AAQAGASVIQIFVGRL 241 (394)
Q Consensus 197 eGi~A~~~L~~eGI~-vN~TlVFS~~-QA~a--------aa~AGa~~ISpFVgRi 241 (394)
+-++|++.+.+.|+. +|+.+||.+. |... +.+.+..-||.|.=.+
T Consensus 152 ~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~ 206 (400)
T PRK07379 152 DIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVL 206 (400)
T ss_pred HHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEeccee
Confidence 568899999999998 9999999853 4432 3455888887764333
No 130
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.87 E-value=31 Score=34.27 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=60.0
Q ss_pred CCcEEEEec------CChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhh
Q 016178 185 PERLLFKIP------STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDAL 258 (394)
Q Consensus 185 ~~nvlIKIP------aT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~ 258 (394)
.+-||||=- .-.+.++.+|+....+..+=++. .+.+|+..|.++|++||.. |.
T Consensus 158 ~d~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv-~tleea~~A~~~gaDyI~l------D~-------------- 216 (277)
T PRK08072 158 YDGVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVET-ETEEQVREAVAAGADIIMF------DN-------------- 216 (277)
T ss_pred CceEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEe-CCHHHHHHHHHcCCCEEEE------CC--------------
Confidence 356888822 22244566666643233332332 5999999999999999966 20
Q ss_pred ccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccH
Q 016178 259 KRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (394)
Q Consensus 259 ~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~ 309 (394)
-|+..++++.+..+ .+..+.+...-+.+++.+ .+|+|.+.+..
T Consensus 217 -----~~~e~l~~~~~~~~---~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 217 -----RTPDEIREFVKLVP---SAIVTEASGGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred -----CCHHHHHHHHHhcC---CCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 24555666655432 234344666778888866 68999987664
No 131
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=50.32 E-value=2e+02 Score=29.94 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=75.3
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeE---eccc
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHL---TFVY 218 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~---TlVF 218 (394)
.+.+.+...+.+-||++-+.+.+..++-++++.. +|+ ..|-=|.-+.-+...++|.+. .+++-+ --+|
T Consensus 200 avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~----~~l----~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~~~ 271 (394)
T PRK15440 200 DMREKVGDDFWLMLDCWMSLDVNYATKLAHACAP----YGL----KWIEECLPPDDYWGYRELKRNAPAGMMVTSGEHEA 271 (394)
T ss_pred HHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhh----cCC----cceeCCCCcccHHHHHHHHHhCCCCCceecCCCcc
Confidence 4445554467888898888887765555555533 333 255656666666677777665 333333 3578
Q ss_pred CHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 219 SFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 219 S~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
+..+.....++| +.++.|=+.++ -|+.-+++|.++.+.+|.+.
T Consensus 272 ~~~~~~~li~~~a~Divq~d~~~~----------------------GGit~~~kia~lA~a~gi~~ 315 (394)
T PRK15440 272 TLQGFRTLLEMGCIDIIQPDVGWC----------------------GGLTELVKIAALAKARGQLV 315 (394)
T ss_pred CHHHHHHHHHcCCCCEEeCCcccc----------------------CCHHHHHHHHHHHHHcCCee
Confidence 999988888886 68888877765 27888888888888887654
No 132
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=49.88 E-value=42 Score=30.54 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=63.4
Q ss_pred HHHHHHHHcCceeeEe--cccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHH
Q 016178 200 EASRLLESEGIQTHLT--FVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277 (394)
Q Consensus 200 ~A~~~L~~eGI~vN~T--lVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~ 277 (394)
+.++...+.|+.+-++ -..+..+...+.+.|+.++-.|.++-.... +...++..++++.+.
T Consensus 94 ~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~---------------~~~~~~~~i~~~~~~-- 156 (202)
T cd04726 94 KAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAA---------------GGWWPEDDLKKVKKL-- 156 (202)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccccc---------------CCCCCHHHHHHHHhh--
Confidence 4556666779999876 668899998888889999998766422211 001355566655543
Q ss_pred HcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 278 KYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 278 ~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
++..+++...-+.+++.+ .+|+|.+.+.-.+.
T Consensus 157 ---~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 157 ---LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred ---cCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhc
Confidence 356677777777888876 47999887765553
No 133
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=49.81 E-value=1.8e+02 Score=30.30 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=50.0
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC--------------hhHHHHHHHHHHcCce-eeEe
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST--------------WQGIEASRLLESEGIQ-THLT 215 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT--------------~eGi~A~~~L~~eGI~-vN~T 215 (394)
.+++|++|..- +++.++. +++.|+ .+|-|-|=+. .+-++|++.|.+.|+. +|+.
T Consensus 129 eitiE~~P~~l--t~e~l~~-------l~~~G~--~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~d 197 (430)
T PRK08208 129 PKSVETSPATT--TAEKLAL-------LAARGV--NRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNID 197 (430)
T ss_pred eEEEEeCcCcC--CHHHHHH-------HHHcCC--CEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 57888887643 2222222 223344 3555554443 2568899999999997 6999
Q ss_pred cccC-HHHHH--------HHHHcCCcEEEechhhh
Q 016178 216 FVYS-FAQAA--------AAAQAGASVIQIFVGRL 241 (394)
Q Consensus 216 lVFS-~~QA~--------aaa~AGa~~ISpFVgRi 241 (394)
+||. +.|.. .+.+.|+.-|+.|.=++
T Consensus 198 lI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~ 232 (430)
T PRK08208 198 LIYGIPGQTHASWMESLDQALVYRPEELFLYPLYV 232 (430)
T ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccc
Confidence 9999 33322 23456889999986444
No 134
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=49.67 E-value=82 Score=30.86 Aligned_cols=119 Identities=20% Similarity=0.190 Sum_probs=72.9
Q ss_pred ecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC---------hhHHHHHHHHHHc-CceeeEecccCHHHHHH
Q 016178 156 VDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST---------WQGIEASRLLESE-GIQTHLTFVYSFAQAAA 225 (394)
Q Consensus 156 Vdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT---------~eGi~A~~~L~~e-GI~vN~TlVFS~~QA~a 225 (394)
.-|...++.+.+++.|+++.+...++.. ..+-| |-| .+|++.+++...+ ||.+ +|-+|+..|+..
T Consensus 30 AGpc~ie~~~~~~~~A~~lk~~~~k~~r---~~~~K-pRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~-~t~~~d~~~~~~ 104 (260)
T TIGR01361 30 AGPCSVESEEQIMETARFVKEAGAKILR---GGAFK-PRTSPYSFQGLGEEGLKLLRRAADEHGLPV-VTEVMDPRDVEI 104 (260)
T ss_pred EeCCccCCHHHHHHHHHHHHHHHHHhcc---Cceec-CCCCCccccccHHHHHHHHHHHHHHhCCCE-EEeeCChhhHHH
Confidence 3477778899999999999988765433 23344 332 3678888777665 9999 788999999999
Q ss_pred HHHcCCcEEEechhhhhhh--hhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCC
Q 016178 226 AAQAGASVIQIFVGRLRDW--ARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGH 281 (394)
Q Consensus 226 aa~AGa~~ISpFVgRidd~--~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~ 281 (394)
+.+. +.++-.=-+-+.++ .+.-. .....--+..|...-+.-+..+.++++..|.
T Consensus 105 l~~~-~d~lkI~s~~~~n~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn 160 (260)
T TIGR01361 105 VAEY-ADILQIGARNMQNFELLKEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGN 160 (260)
T ss_pred HHhh-CCEEEECcccccCHHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 9876 55444332222221 11100 0000001223432347778888888887664
No 135
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=49.60 E-value=92 Score=32.20 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=49.9
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC--------------hhHHHHHHHHHHcCceeeEec
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST--------------WQGIEASRLLESEGIQTHLTF 216 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT--------------~eGi~A~~~L~~eGI~vN~Tl 216 (394)
.|++|++|.. -+. + ..+.+++.|+ .||-|-|=+. .+.++|++.+.+.+.++|+.+
T Consensus 99 eitiE~nP~~-~~~----e----~l~~l~~~Gv--nRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~Dl 167 (390)
T PRK06582 99 EITLETNPTS-FET----E----KFKAFKLAGI--NRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDL 167 (390)
T ss_pred EEEEEeCCCc-CCH----H----HHHHHHHCCC--CEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 6788887753 221 1 2222334455 4555555443 356888888877799999999
Q ss_pred ccCHH-H--------HHHHHHcCCcEEEechhhh
Q 016178 217 VYSFA-Q--------AAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 217 VFS~~-Q--------A~aaa~AGa~~ISpFVgRi 241 (394)
||.+. | ...+++.++.-||.|-=.+
T Consensus 168 I~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i 201 (390)
T PRK06582 168 IYARSGQTLKDWQEELKQAMQLATSHISLYQLTI 201 (390)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEE
Confidence 99875 3 3345566888787774433
No 136
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=48.84 E-value=1.2e+02 Score=30.91 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=78.1
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh-hHHHHHHHHHHcCceeeEecc--cCHHHHHHHHHcCCcEEEe
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-QGIEASRLLESEGIQTHLTFV--YSFAQAAAAAQAGASVIQI 236 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~-eGi~A~~~L~~eGI~vN~TlV--FS~~QA~aaa~AGa~~ISp 236 (394)
..+++++.++-|+.|.++ || +.|=+=.|+.. +=.++++.+.+.+.++.+... ...+-...+.++|+..|-.
T Consensus 17 ~~~s~~~k~~ia~~L~~~----Gv--~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDEL----GV--DVIEAGFPIASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEE
Confidence 456677666666655554 56 45555567654 336677777777665554432 2345556677889988888
Q ss_pred chhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHH-hhcC-ChhhhHh------hhCCCeeccc
Q 016178 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAVR-NKQDLFS------LLGVDYIIAP 308 (394)
Q Consensus 237 FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLa-AS~R-~~~~i~~------laG~D~lTip 308 (394)
|++==+-+...+.. ...+..+..+.++.++.+++|.+..+-. -+.| +.+.+.+ .+|+|.+.++
T Consensus 91 ~~~~Sd~~~~~~~~---------~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 91 FIATSPIHLKYKLK---------KSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred EEcCCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 77632222211111 1112357778888888888887654321 2223 3343332 4788887664
Q ss_pred HH
Q 016178 309 LK 310 (394)
Q Consensus 309 ~~ 310 (394)
..
T Consensus 162 DT 163 (363)
T TIGR02090 162 DT 163 (363)
T ss_pred CC
Confidence 43
No 137
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=48.65 E-value=2.7e+02 Score=27.26 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=31.0
Q ss_pred HHHHHHHHHHc-Cceee-EecccCHHHHHHHHHcCCcEEEechhhh
Q 016178 198 GIEASRLLESE-GIQTH-LTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 198 Gi~A~~~L~~e-GI~vN-~TlVFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
.++.++++.+. +|++- +--|.+.+++..+..+|++.|+..=+=+
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll 267 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANF 267 (301)
T ss_pred cHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHh
Confidence 35666666654 67765 4457899999999999988776654433
No 138
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=48.62 E-value=33 Score=32.38 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=64.5
Q ss_pred ecCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHH
Q 016178 192 IPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (394)
Q Consensus 192 IPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (394)
.|.+...+ ++.....|+.+-.. ++|++|+..|.++|++|+-.|=.. .-|...++.
T Consensus 89 sp~~~~~v--~~~~~~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa~----------------------~~G~~~l~~ 143 (206)
T PRK09140 89 TPNTDPEV--IRRAVALGMVVMPG-VATPTEAFAALRAGAQALKLFPAS----------------------QLGPAGIKA 143 (206)
T ss_pred CCCCCHHH--HHHHHHCCCcEEcc-cCCHHHHHHHHHcCCCEEEECCCC----------------------CCCHHHHHH
Confidence 46655443 34445678887666 999999999999999999976310 125555555
Q ss_pred HHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHHH
Q 016178 272 AYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQ 313 (394)
Q Consensus 272 iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl~ 313 (394)
+...+. ....+++...-+.+++-+ .+|++.+-+.-.+.+
T Consensus 144 l~~~~~---~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 144 LRAVLP---PDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHhhcC---CCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcc
Confidence 443332 246778888888888877 589999887666643
No 139
>PLN02979 glycolate oxidase
Probab=48.53 E-value=66 Score=33.40 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=72.2
Q ss_pred cCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEE--EechhhhhhhhhcCCCCcccchhhccCCCchHHHHH
Q 016178 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVI--QIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (394)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~I--SpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (394)
+-||+=|+-++... ++++-+--|.+.+.|..|.++|++.| |-.=||-.|+. -+.+....
T Consensus 209 ~ltW~dl~wlr~~~--~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~-----------------p~t~~~L~ 269 (366)
T PLN02979 209 TLSWKDVQWLQTIT--KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYV-----------------PATISALE 269 (366)
T ss_pred CCCHHHHHHHHhcc--CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCc-----------------hhHHHHHH
Confidence 36897776666543 68888999999999999999998764 43444432211 01233444
Q ss_pred HHHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHHHHHHhCCC
Q 016178 271 KAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (394)
Q Consensus 271 ~iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~~~ 320 (394)
++.+. .+.+..|+ --.+|+-.+++. .+|+|.+-+.-.+|..+...+.
T Consensus 270 ei~~~---~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~ 319 (366)
T PLN02979 270 EVVKA---TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGE 319 (366)
T ss_pred HHHHH---hCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCH
Confidence 44333 23344444 567899999987 6999999999999888876554
No 140
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=48.22 E-value=2.8e+02 Score=28.11 Aligned_cols=111 Identities=23% Similarity=0.190 Sum_probs=71.5
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEe-cccCH
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYSF 220 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lVFS~ 220 (394)
.+.+.+...+.+-+|++-+.+.+..++-+++|.. +++ .+|-=|.-+..+...+.|.+. +|++.+- -++++
T Consensus 179 ~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~----~~~----~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~~~~~ 250 (368)
T TIGR02534 179 AIAKALGDRASVRVDVNAAWDERTALHYLPQLAD----AGV----ELIEQPTPAENREALARLTRRFNVPIMADESVTGP 250 (368)
T ss_pred HHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHh----cCh----hheECCCCcccHHHHHHHHHhCCCCEEeCcccCCH
Confidence 4444454456777888777777665555555543 222 356656655445555566555 6776543 47899
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 221 ~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
.+.....++| +.++.+=+.++ -|+..++++..+-+.+|.+.
T Consensus 251 ~~~~~~~~~~~~d~~~~d~~~~----------------------GGi~~~~~i~~lA~~~gi~~ 292 (368)
T TIGR02534 251 ADALAIAKASAADVFALKTTKS----------------------GGLLESKKIAAIAEAAGIAL 292 (368)
T ss_pred HHHHHHHHhCCCCEEEEccccc----------------------CCHHHHHHHHHHHHHcCCce
Confidence 9998888775 67776654442 27888888888888887654
No 141
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=48.04 E-value=1.4e+02 Score=29.59 Aligned_cols=82 Identities=11% Similarity=-0.043 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHHHcCc---eeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHH
Q 016178 194 STWQGIEASRLLESEGI---QTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (394)
Q Consensus 194 aT~eGi~A~~~L~~eGI---~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (394)
...+-.++++.+.+.|. .+...+.-..+-...|.++|+..|..|++==+-+..++.. ...+.-++.++
T Consensus 48 ~~~~d~~~v~~~~~~~~~~~~v~~~~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~---------~t~~e~l~~~~ 118 (279)
T cd07947 48 YTEKDREAVEACLDRGYKFPEVTGWIRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLK---------MTREEAMEKYL 118 (279)
T ss_pred cChHHHHHHHHHHHcCCCCCEEEEEecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC---------cCHHHHHHHHH
Confidence 34455666666666543 3444455666667778888988888887544443332222 11124678888
Q ss_pred HHHHHHHHcCCchH
Q 016178 271 KAYNYIHKYGHKSK 284 (394)
Q Consensus 271 ~iy~~~~~~g~~t~ 284 (394)
++.++.+.+|.+..
T Consensus 119 ~~v~~a~~~g~~v~ 132 (279)
T cd07947 119 EIVEEALDHGIKPR 132 (279)
T ss_pred HHHHHHHHCCCeEE
Confidence 89999998876543
No 142
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=47.96 E-value=1.5e+02 Score=31.05 Aligned_cols=78 Identities=15% Similarity=0.274 Sum_probs=50.6
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCc-eeeE
Q 016178 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGI-QTHL 214 (394)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--------------eGi~A~~~L~~eGI-~vN~ 214 (394)
..+++|++|..- +++.++. ..+.|+ .+|.|-|=+.. +-+++++.|.+.|+ ++|+
T Consensus 138 ~e~tie~np~~l--t~e~l~~-------l~~aG~--~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~ 206 (453)
T PRK09249 138 AEISIEIDPREL--DLEMLDA-------LRELGF--NRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINI 206 (453)
T ss_pred CEEEEEecCCcC--CHHHHHH-------HHHcCC--CEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 479999999743 2222222 333344 45655554432 45789999999999 8999
Q ss_pred ecccC--------HHHHH-HHHHcCCcEEEech
Q 016178 215 TFVYS--------FAQAA-AAAQAGASVIQIFV 238 (394)
Q Consensus 215 TlVFS--------~~QA~-aaa~AGa~~ISpFV 238 (394)
.++|. +.+-+ .+.+.|+..|+.|.
T Consensus 207 dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 207 DLIYGLPKQTPESFARTLEKVLELRPDRLAVFN 239 (453)
T ss_pred EEEccCCCCCHHHHHHHHHHHHhcCCCEEEEcc
Confidence 99997 22222 24466888888884
No 143
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=47.62 E-value=82 Score=32.17 Aligned_cols=78 Identities=12% Similarity=0.229 Sum_probs=48.7
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eeE
Q 016178 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THL 214 (394)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~ 214 (394)
..|++|++|..- + ++ .++.+++.|+ .||-|=|-+.. +-++|++.+.+.|+. +|+
T Consensus 90 ~eit~E~~P~~~-~-~~-------~l~~l~~~G~--nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~ 158 (370)
T PRK06294 90 TEITLEANPENL-S-ES-------YIRALALTGI--NRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSI 158 (370)
T ss_pred CeEEEEeCCCCC-C-HH-------HHHHHHHCCC--CEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 478899988642 2 11 2233444455 45666555533 457888999999994 999
Q ss_pred ecccC-HHHHHH--------HHHcCCcEEEech
Q 016178 215 TFVYS-FAQAAA--------AAQAGASVIQIFV 238 (394)
Q Consensus 215 TlVFS-~~QA~a--------aa~AGa~~ISpFV 238 (394)
.+||. +.|-.. +.+.++.-||.|-
T Consensus 159 Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~ 191 (370)
T PRK06294 159 DLIYGLPTQSLSDFIVDLHQAITLPITHISLYN 191 (370)
T ss_pred EeecCCCCCCHHHHHHHHHHHHccCCCeEEEee
Confidence 99998 333222 3345776666653
No 144
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=47.62 E-value=55 Score=33.91 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=71.0
Q ss_pred CChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCc--EEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHH
Q 016178 194 STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGAS--VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (394)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~--~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (394)
.||+=|+.++.. -++++-+--|.+.+-|..|.++|++ +||---||-.+-. ...+....+
T Consensus 215 ~~w~~i~~l~~~--~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~-----------------~a~~~~L~e 275 (367)
T TIGR02708 215 LSPRDIEEIAGY--SGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGG-----------------PAAFDSLQE 275 (367)
T ss_pred CCHHHHHHHHHh--cCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCC-----------------CcHHHHHHH
Confidence 577655555433 2577777788899999999999998 4476666543310 123444455
Q ss_pred HHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHHHHHHhCCC
Q 016178 272 AYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (394)
Q Consensus 272 iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~~~ 320 (394)
+.+.+ +.+..|+ --.+|+..+++. .+|||.+.+.-.+|..|...+.
T Consensus 276 i~~av---~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~ 324 (367)
T TIGR02708 276 VAEAV---DKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGS 324 (367)
T ss_pred HHHHh---CCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCH
Confidence 44432 3334444 567888888876 5999999999999998876654
No 145
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.93 E-value=36 Score=33.46 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHH
Q 016178 197 QGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (394)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (394)
.-++.+|+....+..+ .--+-+++|+..|.++|++||-. +. -....++++.++.
T Consensus 169 ~~v~~~r~~~~~~~~I-~vev~t~eea~~A~~~gaD~I~l-----d~--------------------~~~e~l~~~v~~i 222 (269)
T cd01568 169 EAVKRARAAAPFEKKI-EVEVETLEEAEEALEAGADIIML-----DN--------------------MSPEELKEAVKLL 222 (269)
T ss_pred HHHHHHHHhCCCCCeE-EEecCCHHHHHHHHHcCCCEEEE-----CC--------------------CCHHHHHHHHHHh
Confidence 3455555554323332 22346899999999999999876 11 1224455566666
Q ss_pred HHcCCchHHHHhhcCChhhhHh--hhCCCeeccc
Q 016178 277 HKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (394)
Q Consensus 277 ~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip 308 (394)
++. .+..+.+...-|.+++.+ .+|+|.+.++
T Consensus 223 ~~~-~~i~i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 223 KGL-PRVLLEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred ccC-CCeEEEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 554 455566667788888876 6999998764
No 146
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=46.74 E-value=1.2e+02 Score=30.00 Aligned_cols=138 Identities=15% Similarity=0.212 Sum_probs=77.6
Q ss_pred CCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEec-CChhHHHHHHHHHHcC-----c-eeeEe-cccCHHHHHHHHHc
Q 016178 158 ARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIP-STWQGIEASRLLESEG-----I-QTHLT-FVYSFAQAAAAAQA 229 (394)
Q Consensus 158 p~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIP-aT~eGi~A~~~L~~eG-----I-~vN~T-lVFS~~QA~aaa~A 229 (394)
|...+.+++-++-++.|.+ ++|| +.+=+=-| .+++=.++++++.+.+ + ++.+. ++=.......|.++
T Consensus 12 ~~~~~s~e~K~~i~~~L~~---~~Gv--~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~~ 86 (280)
T cd07945 12 SGVSFSPSEKLNIAKILLQ---ELKV--DRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKSA 86 (280)
T ss_pred CCCccCHHHHHHHHHHHHH---HhCC--CEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHHC
Confidence 3455677776766666532 2355 56666668 5665567777775421 1 12222 33344456667788
Q ss_pred CCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHh----hcC-ChhhhHh------
Q 016178 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAA----AVR-NKQDLFS------ 298 (394)
Q Consensus 230 Ga~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaA----S~R-~~~~i~~------ 298 (394)
|+..|..|++==+-+..++.. ...+..+..++++.++.+.+|.+..+-.. .+| +++.+.+
T Consensus 87 g~~~i~i~~~~S~~h~~~~~~---------~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~ 157 (280)
T cd07945 87 GAKVLNLLTKGSLKHCTEQLR---------KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLS 157 (280)
T ss_pred CCCEEEEEEeCCHHHHHHHHC---------cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHH
Confidence 999888887433323222211 01124677888888999988876543322 123 3343332
Q ss_pred hhCCCeecccH
Q 016178 299 LLGVDYIIAPL 309 (394)
Q Consensus 299 laG~D~lTip~ 309 (394)
.+|+|.+.++.
T Consensus 158 ~~G~~~i~l~D 168 (280)
T cd07945 158 DLPIKRIMLPD 168 (280)
T ss_pred HcCCCEEEecC
Confidence 47998876643
No 147
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=46.66 E-value=3.5e+02 Score=27.96 Aligned_cols=148 Identities=14% Similarity=0.200 Sum_probs=85.5
Q ss_pred eEEEEecCC-ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEecccCHHHHHHHHH
Q 016178 151 RVSTEVDAR-LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQ 228 (394)
Q Consensus 151 ~VS~EVdp~-la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~TlVFS~~QA~aaa~ 228 (394)
+|++|-... -..|.+++++|.++|.+.. .+=|-|-+|. .+-.+|++++.+. .|++-+-.=|....|+.|++
T Consensus 19 PI~VQSMtnt~T~Dv~atv~QI~~L~~aG------ceiVRvavp~-~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~ 91 (346)
T TIGR00612 19 PIVVQSMTNTDTIDIDSTVAQIRALEEAG------CDIVRVTVPD-RESAAAFEAIKEGTNVPLVADIHFDYRLAALAMA 91 (346)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcC------CCEEEEcCCC-HHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHH
Confidence 899995332 2468899999988887763 3556666664 4455566666554 68888888999999999999
Q ss_pred cCCcEEEechhhhhhhhhcCCCCcccchhhccC--CCchHHHHHHHHHHHHHcCC-chHHHHhhcCChhhhHhhhCCCee
Q 016178 229 AGASVIQIFVGRLRDWARNHSGDPEIDDALKRG--EDPALSLVSKAYNYIHKYGH-KSKLMAAAVRNKQDLFSLLGVDYI 305 (394)
Q Consensus 229 AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~--~d~Gv~~v~~iy~~~~~~g~-~t~vLaAS~R~~~~i~~laG~D~l 305 (394)
+|+.=+=.-=|-|-+.-+= ..-++..-..+ -+-|+..=.-=.+++++||. .-+-|..|--.--++++..|-+-+
T Consensus 92 ~g~dkiRINPGNig~~e~v---~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~di 168 (346)
T TIGR00612 92 KGVAKVRINPGNIGFRERV---RDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNV 168 (346)
T ss_pred hccCeEEECCCCCCCHHHH---HHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence 9987666655554321000 00000000000 01122111111255667764 446676665555556676776665
Q ss_pred ccc
Q 016178 306 IAP 308 (394)
Q Consensus 306 Tip 308 (394)
.++
T Consensus 169 viS 171 (346)
T TIGR00612 169 VLS 171 (346)
T ss_pred EEE
Confidence 554
No 148
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=46.10 E-value=2.5e+02 Score=26.98 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=77.1
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEec-ccCH
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTF-VYSF 220 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~Tl-VFS~ 220 (394)
+.+.+.++..+.+-||++-+.|.+. |.++.+..++.++ .+|-=|...+.+...+.|. -++++-+-- ++++
T Consensus 118 ~~vr~~~g~~~~l~vDaN~~w~~~~----A~~~~~~l~~~~i----~~iEqP~~~~d~~~~~~l~-~~~PIa~dEs~~~~ 188 (263)
T cd03320 118 RALREALPADAKLRLDANGGWSLEE----ALAFLEALAAGRI----EYIEQPLPPDDLAELRRLA-AGVPIALDESLRRL 188 (263)
T ss_pred HHHHHHcCCCCeEEEeCCCCCCHHH----HHHHHHhhcccCC----ceEECCCChHHHHHHHHhh-cCCCeeeCCccccc
Confidence 3555666557888899988888765 4444444333322 3677788777888888887 677776654 4677
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 221 ~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
.+.....+.| +.++.+=++++ -|+.-++++.++.+.+|.++
T Consensus 189 ~~~~~~~~~~~~d~v~~k~~~~----------------------GGit~~~~i~~~a~~~gi~~ 230 (263)
T cd03320 189 DDPLALAAAGALGALVLKPALL----------------------GGPRALLELAEEARARGIPA 230 (263)
T ss_pred cCHHHHHhcCCCCEEEECchhc----------------------CCHHHHHHHHHHHHHcCCCE
Confidence 7777777765 67777766653 27888999999988887554
No 149
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=45.81 E-value=2.5e+02 Score=26.06 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=60.9
Q ss_pred ecCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHH
Q 016178 192 IPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (394)
Q Consensus 192 IPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (394)
||.. +-.+.++.+.+.|+.+- ..+.+.+++..+.++|++++... ++ ..-+ +.. .. .......+++
T Consensus 86 l~~~-~~~~~~~~~~~~~i~~i-~~v~~~~~~~~~~~~gad~i~~~-~~-~~~G--~~~--------~~-~~~~~~~i~~ 150 (236)
T cd04730 86 FSFG-PPAEVVERLKAAGIKVI-PTVTSVEEARKAEAAGADALVAQ-GA-EAGG--HRG--------TF-DIGTFALVPE 150 (236)
T ss_pred EcCC-CCHHHHHHHHHcCCEEE-EeCCCHHHHHHHHHcCCCEEEEe-Cc-CCCC--CCC--------cc-ccCHHHHHHH
Confidence 4554 34566777777888874 45778899999999999988643 32 1000 000 00 0134455555
Q ss_pred HHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHHHHH
Q 016178 272 AYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315 (394)
Q Consensus 272 iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl~~L 315 (394)
+.+.. +..++ +-.+++.+++.+ ..|+|.+.+.-.++...
T Consensus 151 i~~~~-----~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 151 VRDAV-----DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred HHHHh-----CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 44332 23344 444555577765 58999988877766554
No 150
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=45.15 E-value=3e+02 Score=26.71 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=63.0
Q ss_pred hHHHHHHHHhcCCC-CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeE
Q 016178 136 ALVNVGGDLAKMVP-GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHL 214 (394)
Q Consensus 136 ~~v~~g~eil~~v~-G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~ 214 (394)
.+....+.+.+..+ -+|+.-.+--+..+.+..++.++++++. |+ ..|||=-..+=++.++.+.+.||.||+
T Consensus 59 em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~a----Ga----~gv~iED~~~~~~~i~ai~~a~i~Via 130 (240)
T cd06556 59 DVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRA----GA----AGVKIEGGEWHIETLQMLTAAAVPVIA 130 (240)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHc----CC----cEEEEcCcHHHHHHHHHHHHcCCeEEE
Confidence 45555667777776 4788877665555557777888877774 33 567887666667778888889998887
Q ss_pred ecccC-----------------------HHHHHHHHHcCCcEEE
Q 016178 215 TFVYS-----------------------FAQAAAAAQAGASVIQ 235 (394)
Q Consensus 215 TlVFS-----------------------~~QA~aaa~AGa~~IS 235 (394)
-.=.. .+++.+..+|||..|=
T Consensus 131 Rtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~ 174 (240)
T cd06556 131 HTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIV 174 (240)
T ss_pred EeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 64331 4456666788887653
No 151
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=45.03 E-value=94 Score=31.84 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHcCceeeEecccCH-HHHH--------HHHHcCCcEEEechhhhhh------hhhcCCCCcccchhhccC
Q 016178 197 QGIEASRLLESEGIQTHLTFVYSF-AQAA--------AAAQAGASVIQIFVGRLRD------WARNHSGDPEIDDALKRG 261 (394)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlVFS~-~QA~--------aaa~AGa~~ISpFVgRidd------~~~~~~~d~~~~~~~~~~ 261 (394)
+-++|++.+.+.|+++|+.+||.+ -|.. .+.+.|+..||.|.=.+.. ..++... .+ ..
T Consensus 141 ~~~~ai~~~~~~~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~------~~-~~ 213 (380)
T PRK09057 141 EALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKL------IL-PD 213 (380)
T ss_pred HHHHHHHHHHHhCccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCC------CC-CC
Confidence 567888888888999999999994 4432 2445588878777443332 2211100 00 01
Q ss_pred CCchHHHHHHHHHHHHHcCCch
Q 016178 262 EDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 262 ~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
.+.-......+.++++..|+..
T Consensus 214 ~~~~~~~~~~~~~~L~~~G~~~ 235 (380)
T PRK09057 214 EDLAADLYELTQEITAAAGLPA 235 (380)
T ss_pred hHHHHHHHHHHHHHHHHcCCch
Confidence 1123355666667777778754
No 152
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=44.46 E-value=2.3e+02 Score=28.63 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=81.8
Q ss_pred EEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEe-----cCC----------hhHHHHHHHHHHc-CceeeEe
Q 016178 152 VSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI-----PST----------WQGIEASRLLESE-GIQTHLT 215 (394)
Q Consensus 152 VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKI-----PaT----------~eGi~A~~~L~~e-GI~vN~T 215 (394)
..+=--|....+.+.+++-|+.+.++.+++|+ +++.|= |=| ++||+-.++..++ |++| +|
T Consensus 17 ~~lIAGPC~iEs~e~~~~~A~~lk~~~~~~g~---~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpv-vT 92 (290)
T PLN03033 17 FFLLAGPNVIESEEHILRMAKHIKDISTKLGL---PLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPI-VT 92 (290)
T ss_pred eEEEecCChhcCHHHHHHHHHHHHHHHHhCCC---cEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCce-EE
Confidence 33444555555688899999999998877777 445442 322 4788888888877 9999 99
Q ss_pred cccCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCc
Q 016178 216 FVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (394)
Q Consensus 216 lVFS~~QA~aaa~AGa~~ISp--FVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~ 282 (394)
=|.+.+|+..+++. ++++.+ |--|-.|..+.... ....-.+.+|.-..+.....+.+|+...|.+
T Consensus 93 eV~~~~q~~~vae~-~DilQIgAr~~rqtdLL~a~~~-tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~ 159 (290)
T PLN03033 93 DVHESSQCEAVGKV-ADIIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQFCAPSVMRNSAEKVRLAGNP 159 (290)
T ss_pred eeCCHHHHHHHHhh-CcEEeeCcHHHHHHHHHHHHHc-cCCeEEeCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999986 344433 44466665533221 0001122344445567777777888876643
No 153
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=44.44 E-value=2.1e+02 Score=30.12 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=52.9
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC--------------hhHHHHHHHHHHcC-ceeeE
Q 016178 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST--------------WQGIEASRLLESEG-IQTHL 214 (394)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT--------------~eGi~A~~~L~~eG-I~vN~ 214 (394)
-.|++|.+|.. .|. + .++.+.+.|+ .||-|-|-+. .+-+++++.+.+.| +++|+
T Consensus 150 ~eitiE~~p~~-~t~-e-------~l~~l~~aGv--nRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~ 218 (449)
T PRK09058 150 CEITLEGRING-FDD-E-------KADAALDAGA--NRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVC 218 (449)
T ss_pred CEEEEEeCcCc-CCH-H-------HHHHHHHcCC--CEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEE
Confidence 47999999963 232 2 2233344566 5676666553 24578889999999 89999
Q ss_pred ecccCH-HH-------H-HHHHHcCCcEEEechhhh
Q 016178 215 TFVYSF-AQ-------A-AAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 215 TlVFS~-~Q-------A-~aaa~AGa~~ISpFVgRi 241 (394)
.+||.+ .| - ..+.+.|..-|+.|.=.+
T Consensus 219 DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~ 254 (449)
T PRK09058 219 DLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNL 254 (449)
T ss_pred EEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 999972 23 2 234456888888775443
No 154
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=44.40 E-value=1.4e+02 Score=29.58 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=56.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEecCCc--cCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh---------hHHHHHHH
Q 016178 136 ALVNVGGDLAKMVPGRVSTEVDARL--AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW---------QGIEASRL 204 (394)
Q Consensus 136 ~~v~~g~eil~~v~G~VS~EVdp~l--a~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~---------eGi~A~~~ 204 (394)
..++.+++.-..+.+.|+....+.. ..|.+..++.++++.+. |+ ++|.|+ -|- +=++++++
T Consensus 124 ~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----G~--d~i~l~--DT~G~~~P~~v~~lv~~l~~ 195 (287)
T PRK05692 124 PVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFAL----GC--YEISLG--DTIGVGTPGQVRAVLEAVLA 195 (287)
T ss_pred HHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHc----CC--cEEEec--cccCccCHHHHHHHHHHHHH
Confidence 3444443332223455555443211 23566666666666554 55 455554 332 22444443
Q ss_pred HH---HcCceeeEecccCHHHHHHHHHcCCcEEEechhhh
Q 016178 205 LE---SEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 205 L~---~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
-- .-++|++-|+=+.+.-+++|.++|+.++.-=++=|
T Consensus 196 ~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~Gl 235 (287)
T PRK05692 196 EFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGL 235 (287)
T ss_pred hCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEcccc
Confidence 21 23789999999999999999999999887665543
No 155
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=44.32 E-value=1e+02 Score=31.35 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHcCce-eeEecccC-HHHH--------HHHHHcCCcEEEechhh
Q 016178 197 QGIEASRLLESEGIQ-THLTFVYS-FAQA--------AAAAQAGASVIQIFVGR 240 (394)
Q Consensus 197 eGi~A~~~L~~eGI~-vN~TlVFS-~~QA--------~aaa~AGa~~ISpFVgR 240 (394)
+-++|++.|.+.||. +|+.+||. +.|. ..+.+.|+..|+.|.=.
T Consensus 145 ~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~ 198 (375)
T PRK05628 145 RAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALI 198 (375)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeee
Confidence 568899999999998 99999996 3332 22446688888877543
No 156
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=44.17 E-value=3.4e+02 Score=27.33 Aligned_cols=111 Identities=23% Similarity=0.230 Sum_probs=69.0
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEec-ccCH
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VYSF 220 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-VFS~ 220 (394)
.+.+.+...+.+-+|++-+++.+..++-++++.. +|+ .+|-=|.-+.-+..++.|.+. +|++-+-- ++++
T Consensus 180 avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~----~~~----~~iEeP~~~~~~~~~~~l~~~~~~pia~dE~~~~~ 251 (365)
T cd03318 180 AIAKALGDRASVRVDVNQAWDESTAIRALPRLEA----AGV----ELIEQPVPRENLDGLARLRSRNRVPIMADESVSGP 251 (365)
T ss_pred HHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHh----cCc----ceeeCCCCcccHHHHHHHHhhcCCCEEcCcccCCH
Confidence 4444454457777888877877655444444433 333 356655544444555555544 66655433 6788
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 221 ~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
.+.....++| +.++.|=+.++ -|+..++++.++.+.+|.++
T Consensus 252 ~~~~~~i~~~~~d~~~~d~~~~----------------------GGit~~~~~~~~a~~~gi~~ 293 (365)
T cd03318 252 ADAFELARRGAADVFSLKIAKS----------------------GGLRRAQKVAAIAEAAGIAL 293 (365)
T ss_pred HHHHHHHHhCCCCeEEEeeccc----------------------CCHHHHHHHHHHHHHcCCce
Confidence 8988888876 45654433332 28999999999999887654
No 157
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=43.93 E-value=2.5e+02 Score=28.01 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=76.1
Q ss_pred EEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEE-----ecCC----------hhHHHHHHHHHHc-CceeeEe
Q 016178 152 VSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK-----IPST----------WQGIEASRLLESE-GIQTHLT 215 (394)
Q Consensus 152 VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIK-----IPaT----------~eGi~A~~~L~~e-GI~vN~T 215 (394)
+.+=--|.-..+.+.+.+-|+.+.+....+++ ..+.| =|=| ++||+-.++..++ |+++ +|
T Consensus 11 ~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~~~---~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~Glpv-vT 86 (264)
T PRK05198 11 FFLIAGPCVIESRDLALRIAEHLKEITDKLGI---PYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPV-LT 86 (264)
T ss_pred eEEEecCCcccCHHHHHHHHHHHHHHHHhcCC---CeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCce-EE
Confidence 33444455555688889999999998766655 35566 2433 4788888888887 9999 99
Q ss_pred cccCHHHHHHHHHcCCcEEEec--hhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCC
Q 016178 216 FVYSFAQAAAAAQAGASVIQIF--VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGH 281 (394)
Q Consensus 216 lVFS~~QA~aaa~AGa~~ISpF--VgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~ 281 (394)
=|.+..|+..+++. ++++.+= --|=-|..+.... ....-.+.+|.-..+.....+.+|+...|.
T Consensus 87 eV~~~~~~~~v~~~-~DilQIgArn~rn~~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn 152 (264)
T PRK05198 87 DVHEPEQAAPVAEV-VDVLQIPAFLCRQTDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGN 152 (264)
T ss_pred EeCCHHHHHHHHhh-CcEEEECchhcchHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCC
Confidence 99999999999987 5554432 2233333322111 000001223322345566666777776653
No 158
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.89 E-value=44 Score=31.81 Aligned_cols=107 Identities=13% Similarity=0.142 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcC
Q 016178 169 RKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNH 248 (394)
Q Consensus 169 ~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~ 248 (394)
+++++.++. +-+++| =|.+...+ ++.....||.+ +=-++|+.++..|.++|++|+-.|-..
T Consensus 79 ~~~~~a~~a-------GA~Fiv-sP~~~~~v--~~~~~~~~i~~-iPG~~T~~E~~~A~~~Gad~vklFPa~-------- 139 (213)
T PRK06552 79 VTARLAILA-------GAQFIV-SPSFNRET--AKICNLYQIPY-LPGCMTVTEIVTALEAGSEIVKLFPGS-------- 139 (213)
T ss_pred HHHHHHHHc-------CCCEEE-CCCCCHHH--HHHHHHcCCCE-ECCcCCHHHHHHHHHcCCCEEEECCcc--------
Confidence 455555554 235555 45555433 33345678888 668899999999999999999987411
Q ss_pred CCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 249 SGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 249 ~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
.-|...++.+...+ ....+|+...-|.+++.+ .+|++.+.+.-.+.
T Consensus 140 --------------~~G~~~ik~l~~~~----p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 140 --------------TLGPSFIKAIKGPL----PQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred --------------cCCHHHHHHHhhhC----CCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHh
Confidence 12454555443322 346788888888999888 58999988877764
No 159
>PRK00915 2-isopropylmalate synthase; Validated
Probab=43.24 E-value=1.4e+02 Score=32.24 Aligned_cols=136 Identities=17% Similarity=0.147 Sum_probs=76.0
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh-hHHHHHHHHHHcCceeeEeccc--CHHHHHHHH----HcCCc
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-QGIEASRLLESEGIQTHLTFVY--SFAQAAAAA----QAGAS 232 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~-eGi~A~~~L~~eGI~vN~TlVF--S~~QA~aaa----~AGa~ 232 (394)
..++++..++-|+.|.++ || +.|=+=.|+.. .=.++++.+.+.+-++.++.+- ...-...+. ++|..
T Consensus 21 ~~~s~e~K~~ia~~L~~~----Gv--~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 21 ASLTVEEKLQIAKQLERL----GV--DVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCC
Confidence 456777777766666665 45 45666667653 3356667775554333333222 123333333 56788
Q ss_pred EEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHH--hhcCChhhhHh------hhCCCe
Q 016178 233 VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA--AAVRNKQDLFS------LLGVDY 304 (394)
Q Consensus 233 ~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLa--AS~R~~~~i~~------laG~D~ 304 (394)
.|..|++--+-+...+.. ...+..+..+.++.+|.+++|.+..+=. ++-.+++.+.+ .+|+|.
T Consensus 95 ~v~i~~~~Sd~h~~~~l~---------~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~ 165 (513)
T PRK00915 95 RIHTFIATSPIHMEYKLK---------MSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATT 165 (513)
T ss_pred EEEEEECCcHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 888888665544332222 1113467888899999999887653222 23233343332 479888
Q ss_pred ecccHH
Q 016178 305 IIAPLK 310 (394)
Q Consensus 305 lTip~~ 310 (394)
+.++.+
T Consensus 166 i~l~DT 171 (513)
T PRK00915 166 INIPDT 171 (513)
T ss_pred EEEccC
Confidence 766443
No 160
>PRK03343 transaldolase; Validated
Probab=43.06 E-value=8.9 Score=39.67 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=34.9
Q ss_pred ccCHHHHhhccc-ceeccccchhhhhc--cCCCCcccChhHHHHHhcCChHHHHHHHHH
Q 016178 57 LSTELDAVSSFS-EIVPDTVVFDDFER--FPPTAATVSSSLLLGICSLPDTIFRNAVDM 112 (394)
Q Consensus 57 ~~~~Ld~L~~~t-~ivaDt~d~~~i~~--~~p~daTTNpsli~~~~~nP~ti~~~ai~~ 112 (394)
|.|.|.+|.++. .++.|.-+-+-|.. |.- -.+-..+.|+|+|| +||.++|..
T Consensus 1 ~~~~l~~l~~~g~s~WlD~i~R~~l~~g~l~~---lI~~~g~~GaTsNP-sIf~~Ai~~ 55 (368)
T PRK03343 1 MMNPLQALSALGQSIWLDDLSRDRLTSGNLAR---LIDEKGVVGVTSNP-AIFQKAIAG 55 (368)
T ss_pred CCcHHHHHHHcCcEEeecCCccccccCcCHHH---HHHhCCCCeeccCH-HHHHHHHhC
Confidence 347799999886 49999987765531 100 00111345999999 999999754
No 161
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=42.94 E-value=1.1e+02 Score=30.94 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=48.5
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eeEe
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THLT 215 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~T 215 (394)
.+++|++|..- +++.++ ...+.|+ .+|-|-|-+.. +-++|++.|.+.||. +|+.
T Consensus 87 eitie~~p~~~--t~e~l~-------~l~~~G~--~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~d 155 (374)
T PRK05799 87 EFTVEGNPGTF--TEEKLK-------ILKSMGV--NRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVD 155 (374)
T ss_pred EEEEEeCCCcC--CHHHHH-------HHHHcCC--CEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 67888887532 222222 2333344 35666665543 457888999999996 9999
Q ss_pred cccCH-HHH--------HHHHHcCCcEEEech
Q 016178 216 FVYSF-AQA--------AAAAQAGASVIQIFV 238 (394)
Q Consensus 216 lVFS~-~QA--------~aaa~AGa~~ISpFV 238 (394)
++|.+ .|- ..+.+.|+.-||.|.
T Consensus 156 li~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 187 (374)
T PRK05799 156 LMFGLPNQTLEDWKETLEKVVELNPEHISCYS 187 (374)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 99985 332 224456887777775
No 162
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=42.90 E-value=1.8e+02 Score=28.12 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC-----hhH----HHHHHHH-H--HcCceeeEecccCHHHHHHHHH
Q 016178 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST-----WQG----IEASRLL-E--SEGIQTHLTFVYSFAQAAAAAQ 228 (394)
Q Consensus 161 a~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT-----~eG----i~A~~~L-~--~eGI~vN~TlVFS~~QA~aaa~ 228 (394)
..+.+..++-++++.++ |+ +.|.| +-| ++- ++.+++- . .-|+|++-|+=+.+.-+++|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~----G~--d~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~ 208 (263)
T cd07943 137 MASPEELAEQAKLMESY----GA--DCVYV--TDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVE 208 (263)
T ss_pred CCCHHHHHHHHHHHHHc----CC--CEEEE--cCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHH
Confidence 35666666666665553 44 45554 433 332 3344332 1 2388999999999999999999
Q ss_pred cCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 229 AGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 229 AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
+|+.+|--=++=+ |+..|-.....+..+++..|+++
T Consensus 209 aGa~~vd~s~~Gl-------------------G~~aGN~~~E~lv~~L~~~g~~~ 244 (263)
T cd07943 209 AGATRIDGSLAGL-------------------GAGAGNTPLEVLVAVLERMGIET 244 (263)
T ss_pred hCCCEEEeecccc-------------------cCCcCCccHHHHHHHHHhcCCCC
Confidence 9988654433322 23356555666666666555443
No 163
>PLN02489 homocysteine S-methyltransferase
Probab=42.77 E-value=2.7e+02 Score=28.23 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcEEE-EecCChhHHHHHHHHHHcC--ceeeEec
Q 016178 164 THGIIRKVHDLLKLYSEIDVPPERLLF-KIPSTWQGIEASRLLESEG--IQTHLTF 216 (394)
Q Consensus 164 ~e~~I~eA~~l~~l~~~~gi~~~nvlI-KIPaT~eGi~A~~~L~~eG--I~vN~Tl 216 (394)
.+++.+.-++.++.+.+.|+ +-+++ -+|...|...+++.++..+ +++-+++
T Consensus 162 ~~e~~~~~~~qi~~l~~~gv--D~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~ 215 (335)
T PLN02489 162 LEKLKDFHRRRLQVLAEAGP--DLIAFETIPNKLEAQAYVELLEEENIKIPAWISF 215 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEE
Confidence 34444444555555555566 56777 4899888887777777654 5543333
No 164
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=42.54 E-value=2.5e+02 Score=28.62 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=50.5
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eeEe
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THLT 215 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~T 215 (394)
.+++|++|..-.+ + .++++++.|+ .+|-|-|=+.. +-++|++.+.+.|+. +|+.
T Consensus 91 eitiE~nP~~lt~--e-------~l~~lk~~G~--nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~d 159 (353)
T PRK05904 91 EFTIECNPELITQ--S-------QINLLKKNKV--NRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCD 159 (353)
T ss_pred eEEEEeccCcCCH--H-------HHHHHHHcCC--CEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 6888888864321 1 2222333444 45555554432 558899999999996 9999
Q ss_pred cccCH-HHH-------H-HHHHcCCcEEEechhhhh
Q 016178 216 FVYSF-AQA-------A-AAAQAGASVIQIFVGRLR 242 (394)
Q Consensus 216 lVFS~-~QA-------~-aaa~AGa~~ISpFVgRid 242 (394)
+||.+ .|. + .+.+.|+..++.|-=.+.
T Consensus 160 lI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~ 195 (353)
T PRK05904 160 FLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIK 195 (353)
T ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEec
Confidence 99972 222 2 234568888888765554
No 165
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=42.35 E-value=1.2e+02 Score=27.56 Aligned_cols=134 Identities=25% Similarity=0.308 Sum_probs=80.6
Q ss_pred CCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC--h---hHHHHHHHHHHcCceeeEecc----c
Q 016178 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST--W---QGIEASRLLESEGIQTHLTFV----Y 218 (394)
Q Consensus 148 v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT--~---eGi~A~~~L~~eGI~vN~TlV----F 218 (394)
-+.++++-+++..-.|.+ .++ .+..+. ..+.+..++++.|+.+ . .....++.|.+.|+++-+.-+ .
T Consensus 86 ~~~~l~v~i~~~~l~~~~-f~~---~l~~~l-~~~~~~~~l~lei~e~~~~~~~~~~~~l~~l~~~G~~i~ld~~g~~~~ 160 (236)
T PF00563_consen 86 PDLPLFVNISPESLLDPE-FLD---WLSNLL-QYGLPPSRLVLEISENDLPNDAELLENLRRLRSLGFRIALDDFGSGSS 160 (236)
T ss_dssp TTSEEEEEE-HHHHGSCC-HHH---HHHHHH-HTTGGGGGEEEEEEGHHHHHHHHHHHHHHHHHHCT-EEEEEEETSTCG
T ss_pred CCceEEEEeehhhhhccc-ccc---cccccc-cccccccceEEEEechHhhhhHHHHHHHHHHHhcCceeEeeeccCCcc
Confidence 356788888776544443 222 233333 4556778999999998 2 345788889999999977755 2
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh
Q 016178 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (394)
Q Consensus 219 S~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~ 298 (394)
++.. .......+|-.=...+.+.. ....-..++.+.++.+++| .++++..+.+..+.-.
T Consensus 161 ~~~~---l~~l~~~~ikld~~~~~~~~----------------~~~~~~~l~~l~~~~~~~~--~~via~gVe~~~~~~~ 219 (236)
T PF00563_consen 161 SLEY---LASLPPDYIKLDGSLVRDLS----------------DEEAQSLLQSLINLAKSLG--IKVIAEGVESEEQLEL 219 (236)
T ss_dssp CHHH---HHHHCGSEEEEEHHGHTTTT----------------SHHHHHHHHHHHHHHHHTT---EEEEECE-SHHHHHH
T ss_pred hhhh---hhhcccccceeecccccccc----------------hhhHHHHHHHHHHHhhccc--cccceeecCCHHHHHH
Confidence 3322 33344555544444442210 0124556667777777765 5678888888777754
Q ss_pred --hhCCCeecc
Q 016178 299 --LLGVDYIIA 307 (394)
Q Consensus 299 --laG~D~lTi 307 (394)
..|||++-.
T Consensus 220 l~~~G~~~~QG 230 (236)
T PF00563_consen 220 LKELGVDYIQG 230 (236)
T ss_dssp HHHTTESEEES
T ss_pred HHHcCCCEEEe
Confidence 699998754
No 166
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.33 E-value=37 Score=31.41 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHH
Q 016178 198 GIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277 (394)
Q Consensus 198 Gi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~ 277 (394)
|..-++.....|+..-.= ++++.|+..|.++|++|+-+|-..--- |+..++.+...+
T Consensus 94 ~~~~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt~~~~---------------------G~~~l~~~~~~~- 150 (187)
T PRK07455 94 DPELIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPVQAVG---------------------GADYIKSLQGPL- 150 (187)
T ss_pred CHHHHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcCCccc---------------------CHHHHHHHHhhC-
Q ss_pred HcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHHHH
Q 016178 278 KYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQS 314 (394)
Q Consensus 278 ~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl~~ 314 (394)
++..+|+-..-+.+++-+ .+|++.+-+.-.++++
T Consensus 151 ---~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~~ 186 (187)
T PRK07455 151 ---GHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPK 186 (187)
T ss_pred ---CCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhcccC
No 167
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=42.29 E-value=49 Score=32.58 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHH
Q 016178 197 QGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (394)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (394)
.-++.+|++...+..+=++ +-+++|+..|.++|++||-. +. -+...++++.+.+
T Consensus 166 ~av~~~r~~~~~~~~Igve-v~t~eea~~A~~~gaDyI~l-----d~--------------------~~~e~lk~~v~~~ 219 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVE-VESLEEAEEAAEAGADIIML-----DN--------------------MKPEEIKEAVQLL 219 (265)
T ss_pred HHHHHHHHhCCCCCeEEEE-eCCHHHHHHHHHcCCCEEEE-----CC--------------------CCHHHHHHHHHHh
Confidence 4466666664433333222 35999999999999998865 11 1234455555544
Q ss_pred HHcCCchHHHHhhcCChhhhHh--hhCCCeeccc
Q 016178 277 HKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (394)
Q Consensus 277 ~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip 308 (394)
+.. ..+.+...-+.+++.+ .+|+|.+.++
T Consensus 220 ~~~---ipi~AsGGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 220 KGR---VLLEASGGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred cCC---CcEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 322 4455555678888876 6999998774
No 168
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=42.18 E-value=1e+02 Score=30.44 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=54.8
Q ss_pred cCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEE----ec----CChhHHHHHHHH----HHc-CceeeEeccc-CHHH
Q 016178 157 DARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK----IP----STWQGIEASRLL----ESE-GIQTHLTFVY-SFAQ 222 (394)
Q Consensus 157 dp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIK----IP----aT~eGi~A~~~L----~~e-GI~vN~TlVF-S~~Q 222 (394)
+|++..+.+++++.|.+=...|++.|+|. |||- +| .-++-+.++..+ ..+ ++++=+-++. ...+
T Consensus 16 sP~~~~~~~~i~e~A~~ea~~l~~~GvD~--viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~a 93 (257)
T TIGR00259 16 SPSFDDNLNAVIDKAWKDAMALEEGGVDA--VMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVA 93 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCE--EEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHH
Confidence 78888899999999999999999999964 4442 23 334555555444 222 6677776777 6666
Q ss_pred HHHHHH-cCCcEEEe
Q 016178 223 AAAAAQ-AGASVIQI 236 (394)
Q Consensus 223 A~aaa~-AGa~~ISp 236 (394)
+++.|. +|+++|-.
T Consensus 94 al~iA~a~ga~FIRv 108 (257)
T TIGR00259 94 ALAIAMAVGAKFIRV 108 (257)
T ss_pred HHHHHHHhCCCEEEE
Confidence 777664 48988854
No 169
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=42.17 E-value=1.7e+02 Score=29.06 Aligned_cols=114 Identities=20% Similarity=0.213 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEE-----ecCC----------hhHHHHHHHHHHc-CceeeEecccCHHHHHH
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFK-----IPST----------WQGIEASRLLESE-GIQTHLTFVYSFAQAAA 225 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIK-----IPaT----------~eGi~A~~~L~~e-GI~vN~TlVFS~~QA~a 225 (394)
.+.+.+++-|+.+.+....+|+ ..+.| =|=| ++||+-.++..++ |++| +|=|.+..|+..
T Consensus 13 Es~e~~~~~A~~lk~~~~~~~~---~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpv-vTeV~~~~~~~~ 88 (258)
T TIGR01362 13 ESEDHALRVAEKLKELTSKLGV---PFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPI-LTDVHESSQCEP 88 (258)
T ss_pred cCHHHHHHHHHHHHHHHHhcCC---CeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCce-EEEeCCHHHHHH
Confidence 3477788889999888766655 34555 2333 3688888888877 9999 899999999999
Q ss_pred HHHcCCcEEEec--hhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCC
Q 016178 226 AAQAGASVIQIF--VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGH 281 (394)
Q Consensus 226 aa~AGa~~ISpF--VgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~ 281 (394)
+++. ++++.+= --|=-+..+.... ....-.+.+|.-.-+.....+.+|+...|.
T Consensus 89 vae~-vDilQIgArn~rn~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn 144 (258)
T TIGR01362 89 VAEV-VDIIQIPAFLCRQTDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGN 144 (258)
T ss_pred HHhh-CcEEEeCchhcchHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCC
Confidence 9987 5555442 2232233322111 000001223322234556666677777653
No 170
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=42.12 E-value=2.4e+02 Score=31.25 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=56.3
Q ss_pred eEEEEecCC-ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--hHHHHHHH-HHHcC--ceeeEecccCHHHHH
Q 016178 151 RVSTEVDAR-LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRL-LESEG--IQTHLTFVYSFAQAA 224 (394)
Q Consensus 151 ~VS~EVdp~-la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--eGi~A~~~-L~~eG--I~vN~TlVFS~~QA~ 224 (394)
+|++|-... --.|++++++|.++|.+.. .+=|=|-+|.-. +.++.+++ |.++| |++-+-.=|...-|.
T Consensus 26 PI~vQSMt~t~T~D~~atv~Qi~~l~~aG------ceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~ 99 (611)
T PRK02048 26 PIRIQSMTNTSTMDTEACVAQAKRIIDAG------GEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVAD 99 (611)
T ss_pred ceEEEecCCCCcccHHHHHHHHHHHHHcC------CCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHH
Confidence 899995433 2468999999999998863 455667777544 33444432 33445 666777889999999
Q ss_pred HHHHcCCcEEEechhhh
Q 016178 225 AAAQAGASVIQIFVGRL 241 (394)
Q Consensus 225 aaa~AGa~~ISpFVgRi 241 (394)
.|+++ +.=|=.-=|-+
T Consensus 100 ~a~~~-v~kiRINPGN~ 115 (611)
T PRK02048 100 VAAQY-AEKVRINPGNY 115 (611)
T ss_pred HHHHh-hCCEEECCCcC
Confidence 99988 54444444444
No 171
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=41.80 E-value=86 Score=32.44 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=53.6
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEE------EecCC-------------------h
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLF------KIPST-------------------W 196 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlI------KIPaT-------------------~ 196 (394)
+.|+.+-+.+.-+=|-|.-.+|.+..++-|++|.++.++. +++++| -=|=| .
T Consensus 44 ~~Il~g~d~rllvIvGPCSIhd~~~aleyA~rLk~l~~~~---~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~ 120 (356)
T PRK12822 44 RNILLGKDPRLLVIIGPCSIHDPQAALEYAKRLAVLQHQY---LDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIE 120 (356)
T ss_pred HHHHcCCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHHhh---cccEEEEEEeccccCCCCCCccccccCCCCCCCccHH
Confidence 4778888889999999999999999999999999997652 122222 11444 4
Q ss_pred hHHHHHHHH---H-HcCceeeEecccC
Q 016178 197 QGIEASRLL---E-SEGIQTHLTFVYS 219 (394)
Q Consensus 197 eGi~A~~~L---~-~eGI~vN~TlVFS 219 (394)
+||+.+++| . +.|.++ +|-+..
T Consensus 121 ~GL~i~R~ll~~~~~~GlPv-atE~ld 146 (356)
T PRK12822 121 KGLRLARQLLLSINTLGLAT-ATEFLD 146 (356)
T ss_pred HHHHHHHHHHHHHHHhCCCE-EEeecc
Confidence 888898888 3 348877 444433
No 172
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=41.29 E-value=90 Score=33.39 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=65.6
Q ss_pred HHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEEEechh--hhhhhhhcCCCCcccchhhc-cCCCchHHHHHHHH
Q 016178 199 IEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVG--RLRDWARNHSGDPEIDDALK-RGEDPALSLVSKAY 273 (394)
Q Consensus 199 i~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVg--Ridd~~~~~~~d~~~~~~~~-~~~d~Gv~~v~~iy 273 (394)
+.+++.+.+. ++.+-+--+-+.+++..+.++|+.+|.+=+| .+...- .+. .| -|-+..+.++.
T Consensus 254 ~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr-----------~~~~~g-~~~~~a~~~~~ 321 (475)
T TIGR01303 254 ISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTR-----------MMTGVG-RPQFSAVLECA 321 (475)
T ss_pred HHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCc-----------cccCCC-CchHHHHHHHH
Confidence 6677777776 7999998899999999999999999874332 222100 000 01 13344455555
Q ss_pred HHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHH
Q 016178 274 NYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKV 311 (394)
Q Consensus 274 ~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~v 311 (394)
+..++++ ..|+ --.+|+..++.. .+|+|.+.+.--+
T Consensus 322 ~~~~~~~--~~viadGgi~~~~di~kala~GA~~vm~g~~~ 360 (475)
T TIGR01303 322 AEARKLG--GHVWADGGVRHPRDVALALAAGASNVMVGSWF 360 (475)
T ss_pred HHHHHcC--CcEEEeCCCCCHHHHHHHHHcCCCEEeechhh
Confidence 5556654 3445 346788999987 5999999887654
No 173
>PRK07695 transcriptional regulator TenI; Provisional
Probab=41.23 E-value=52 Score=30.32 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=53.2
Q ss_pred CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHh
Q 016178 209 GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAA 288 (394)
Q Consensus 209 GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaA 288 (394)
+..+=+| +.+.+|+..+.++|++|+. +|++..... +.+ . .-.|+..++++.+. .+..|++.
T Consensus 95 ~~~ig~s-~~s~e~a~~a~~~Gadyi~--~g~v~~t~~-k~~-------~---~~~g~~~l~~~~~~-----~~ipvia~ 155 (201)
T PRK07695 95 YLHVGYS-VHSLEEAIQAEKNGADYVV--YGHVFPTDC-KKG-------V---PARGLEELSDIARA-----LSIPVIAI 155 (201)
T ss_pred CCEEEEe-CCCHHHHHHHHHcCCCEEE--ECCCCCCCC-CCC-------C---CCCCHHHHHHHHHh-----CCCCEEEE
Confidence 5556555 6799999999999999983 344432110 000 0 01356666666442 24667777
Q ss_pred hcCChhhhHh--hhCCCeecccHHHH
Q 016178 289 AVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 289 S~R~~~~i~~--laG~D~lTip~~vl 312 (394)
..-+.+++-+ .+|+|.+.+.-.+.
T Consensus 156 GGI~~~~~~~~~~~Ga~gvav~s~i~ 181 (201)
T PRK07695 156 GGITPENTRDVLAAGVSGIAVMSGIF 181 (201)
T ss_pred cCCCHHHHHHHHHcCCCEEEEEHHHh
Confidence 7667777765 58999887766664
No 174
>PRK06801 hypothetical protein; Provisional
Probab=41.18 E-value=1.3e+02 Score=30.14 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=88.4
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC---ChhHHHHHHHHHHcCceeeEecccCHHHHHH
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TWQGIEASRLLESEGIQTHLTFVYSFAQAAA 225 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa---T~eGi~A~~~L~~eGI~vN~TlVFS~~QA~a 225 (394)
.|+=|+++|.. ..+.++-++..+++.++.+..|++ |-.-|=. ...++ .... ...+..-.++||..
T Consensus 96 ~GftSVm~D~S-~l~~eeNi~~t~~v~~~a~~~gv~---VE~ElG~vgg~e~~v-----~~~~---~~~~~~T~pe~a~~ 163 (286)
T PRK06801 96 LGFSSVMFDGS-TLEYEENVRQTREVVKMCHAVGVS---VEAELGAVGGDEGGA-----LYGE---ADSAKFTDPQLARD 163 (286)
T ss_pred hCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHHcCCe---EEeecCcccCCCCCc-----ccCC---cccccCCCHHHHHH
Confidence 48889999985 356789999999999999888773 2222221 11111 0001 01222336699999
Q ss_pred HH-HcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCC
Q 016178 226 AA-QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGV 302 (394)
Q Consensus 226 aa-~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~ 302 (394)
.. +-|++++++=+|-..-.++. ....++...+++.+.. +.+.-+.+.|.-..+++.+ .+|+
T Consensus 164 f~~~tgvD~LAvaiGt~Hg~y~~-------------~~~l~~e~l~~i~~~~---~~PLVlHGGSgi~~e~~~~~i~~Gi 227 (286)
T PRK06801 164 FVDRTGIDALAVAIGNAHGKYKG-------------EPKLDFARLAAIHQQT---GLPLVLHGGSGISDADFRRAIELGI 227 (286)
T ss_pred HHHHHCcCEEEeccCCCCCCCCC-------------CCCCCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCC
Confidence 88 66999999988877544321 0123666667665533 3455555777777777765 5888
Q ss_pred CeecccHHHHHHHH
Q 016178 303 DYIIAPLKVLQSLK 316 (394)
Q Consensus 303 D~lTip~~vl~~L~ 316 (394)
+-+-+.-.+.....
T Consensus 228 ~KINv~T~~~~a~~ 241 (286)
T PRK06801 228 HKINFYTGMSQAAL 241 (286)
T ss_pred cEEEehhHHHHHHH
Confidence 87777666655543
No 175
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=40.36 E-value=3.6e+02 Score=26.33 Aligned_cols=67 Identities=19% Similarity=0.128 Sum_probs=43.9
Q ss_pred HHHHHHHHHc-CceeeE-ecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHH
Q 016178 199 IEASRLLESE-GIQTHL-TFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (394)
Q Consensus 199 i~A~~~L~~e-GI~vN~-TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (394)
++.++++.+. +|++-+ --|++.++|..+.++||+.|. +||---+ ++ +---...+.+.+++
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~--igr~~l~------~p----------~~~~~i~~~l~~~~ 284 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQ--VGTAVYY------RG----------FAFKKIIEGLIAFL 284 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCcee--ecHHHhc------Cc----------hHHHHHHHHHHHHH
Confidence 4667777665 777764 578999999999999988776 4443211 00 11234555666677
Q ss_pred HHcCCch
Q 016178 277 HKYGHKS 283 (394)
Q Consensus 277 ~~~g~~t 283 (394)
+++|+++
T Consensus 285 ~~~g~~~ 291 (300)
T TIGR01037 285 KAEGFTS 291 (300)
T ss_pred HHcCCCC
Confidence 7788765
No 176
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=40.30 E-value=88 Score=32.59 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=71.9
Q ss_pred cCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEE--echhhhhhhhhcCCCCcccchhhccCCCchHHHHH
Q 016178 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQ--IFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (394)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~IS--pFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (394)
..||+=|+-++... +.++-+--|.|.+.|..|.++|+..|- ---||..| +.-+-+....
T Consensus 231 ~ltW~di~~lr~~~--~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d-----------------~~~~t~~~L~ 291 (381)
T PRK11197 231 SISWKDLEWIRDFW--DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD-----------------GVLSSARALP 291 (381)
T ss_pred CCCHHHHHHHHHhC--CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCC-----------------CcccHHHHHH
Confidence 46998877776653 678888999999999999999987654 32233111 0011233333
Q ss_pred HHHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHHHHHHhCCC
Q 016178 271 KAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (394)
Q Consensus 271 ~iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~~~ 320 (394)
++. +..+.+..|+ ...+|+-.+++. .+|+|.+-+.-.+|..+...+.
T Consensus 292 ~i~---~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~ 341 (381)
T PRK11197 292 AIA---DAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQ 341 (381)
T ss_pred HHH---HHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccH
Confidence 333 3333345555 567899999987 5999999999999998876544
No 177
>PRK10060 RNase II stability modulator; Provisional
Probab=40.20 E-value=4.3e+02 Score=29.08 Aligned_cols=137 Identities=17% Similarity=0.114 Sum_probs=80.5
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh------hHHHHHHHHHHcCceeeEecccCHHH
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW------QGIEASRLLESEGIQTHLTFVYSFAQ 222 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~------eGi~A~~~L~~eGI~vN~TlVFS~~Q 222 (394)
+-+|++-++++--.|. ..++. +.+..++.++++.+++|-|+-+- .-...++.|.+.|+++-+-=.-+-.-
T Consensus 492 ~~~i~vNls~~~l~~~-~~~~~---l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDdfGtg~s 567 (663)
T PRK10060 492 NLRVAVNVSARQLADQ-TIFTA---LKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFSQLGAQVHLDDFGTGYS 567 (663)
T ss_pred CeEEEEEcCHHHhCCC-cHHHH---HHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 3468888887643332 23333 55555667899999999999873 34677899999999996642211111
Q ss_pred HHHHH-HcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--h
Q 016178 223 AAAAA-QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--L 299 (394)
Q Consensus 223 A~aaa-~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--l 299 (394)
..... .-..++|=.=-+-+.+. . ........++.+..+.+..| .+|++-.+-+.++... .
T Consensus 568 sl~~L~~l~~d~iKiD~sfv~~i--------------~-~~~~~~~~v~~ii~~a~~lg--~~viAeGVEt~~q~~~l~~ 630 (663)
T PRK10060 568 SLSQLARFPIDAIKLDQSFVRDI--------------H-KQPVSQSLVRAIVAVAQALN--LQVIAEGVETAKEDAFLTK 630 (663)
T ss_pred hHHHHHhCCCCEEEECHHHHhcc--------------c-cCcchHHHHHHHHHHHHHCC--CcEEEecCCCHHHHHHHHH
Confidence 11111 11222222111111110 0 01235677888888888875 5678888888877755 6
Q ss_pred hCCCeec
Q 016178 300 LGVDYII 306 (394)
Q Consensus 300 aG~D~lT 306 (394)
+|||++-
T Consensus 631 ~G~d~~Q 637 (663)
T PRK10060 631 NGVNERQ 637 (663)
T ss_pred cCCCEEe
Confidence 9999763
No 178
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=38.98 E-value=69 Score=29.96 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=56.8
Q ss_pred HHHHHHHHHcC-ceeeEecccCHHHHHHHHHcCCcEEEec-hhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHH
Q 016178 199 IEASRLLESEG-IQTHLTFVYSFAQAAAAAQAGASVIQIF-VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (394)
Q Consensus 199 i~A~~~L~~eG-I~vN~TlVFS~~QA~aaa~AGa~~ISpF-VgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (394)
-+.++.+.+.| +.+-+ -+.+.+++..+.++|+.|+..+ .|+-..- + . ...+.+..++++.+..
T Consensus 112 ~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~---~-~----------~~~~~~~~l~~i~~~~ 176 (219)
T cd04729 112 AELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEET---A-K----------TEDPDFELLKELRKAL 176 (219)
T ss_pred HHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccc---c-C----------CCCCCHHHHHHHHHhc
Confidence 34555566666 76644 5689999999999999999765 3432110 0 0 0113455555554432
Q ss_pred HHcCCchHHHHhh-cCChhhhHh--hhCCCeecccHHHH
Q 016178 277 HKYGHKSKLMAAA-VRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 277 ~~~g~~t~vLaAS-~R~~~~i~~--laG~D~lTip~~vl 312 (394)
+..+++.+ +++.+++.+ ..|||.+.+.-.+.
T Consensus 177 -----~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~ 210 (219)
T cd04729 177 -----GIPVIAEGRINSPEQAAKALELGADAVVVGSAIT 210 (219)
T ss_pred -----CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence 34455444 456777776 58999988775553
No 179
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=38.33 E-value=3.1e+02 Score=24.88 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=86.5
Q ss_pred CCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChh------HHHHHHHHHHcCceeeEecccCHH
Q 016178 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ------GIEASRLLESEGIQTHLTFVYSFA 221 (394)
Q Consensus 148 v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~e------Gi~A~~~L~~eGI~vN~TlVFS~~ 221 (394)
..+.+++-+++....+.+ .+ ..+..+.+..++++.+++|.|+..-- =...++.|.+.|+++-+.=+-+-.
T Consensus 82 ~~~~l~ini~~~~l~~~~-~~---~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~~l~ld~~g~~~ 157 (240)
T cd01948 82 PDLRLSVNLSARQLRDPD-FL---DRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGY 157 (240)
T ss_pred CCeEEEEECCHHHhCCcH-HH---HHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCCeEEEeCCCCcH
Confidence 456899999887655433 22 33555666678888899999998652 377889999999998775443333
Q ss_pred HHH-HHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--
Q 016178 222 QAA-AAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS-- 298 (394)
Q Consensus 222 QA~-aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~-- 298 (394)
.-. ...+...++|-.=-+-+.+.. .....-..++.+.+..+.+ ..+|++..+.+..+...
T Consensus 158 ~~~~~l~~~~~d~iKld~~~~~~~~---------------~~~~~~~~l~~l~~~~~~~--~~~via~gVe~~~~~~~~~ 220 (240)
T cd01948 158 SSLSYLKRLPVDYLKIDRSFVRDIE---------------TDPEDRAIVRAIIALAHSL--GLKVVAEGVETEEQLELLR 220 (240)
T ss_pred hhHHHHHhCCCCEEEECHHHHHhHh---------------cChhhHHHHHHHHHHHHHC--CCeEEEEecCCHHHHHHHH
Confidence 322 222334555533222222211 0012355666677766665 47789999888887765
Q ss_pred hhCCCeec
Q 016178 299 LLGVDYII 306 (394)
Q Consensus 299 laG~D~lT 306 (394)
.+|+|++-
T Consensus 221 ~~gi~~~Q 228 (240)
T cd01948 221 ELGCDYVQ 228 (240)
T ss_pred HcCCCeee
Confidence 69998764
No 180
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=37.83 E-value=1.5e+02 Score=27.55 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=62.0
Q ss_pred CcEEEEecCC-----hhHHHHHHHHHH-cCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhc
Q 016178 186 ERLLFKIPST-----WQGIEASRLLES-EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259 (394)
Q Consensus 186 ~nvlIKIPaT-----~eGi~A~~~L~~-eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~ 259 (394)
+-|++=.|.. .+-.+.++.+.+ .|+.+-+ -+.+.+++..+.++|+.|+....+-... ..+.
T Consensus 90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~--~~~~---------- 156 (221)
T PRK01130 90 DIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTE--ETKK---------- 156 (221)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeec--CCCC----------
Confidence 3555545431 223345556656 7888754 4679999999999999999764322111 0000
Q ss_pred cCCCchHHHHHHHHHHHHHcCCchHHHHhh-cCChhhhHh--hhCCCeecccHHH
Q 016178 260 RGEDPALSLVSKAYNYIHKYGHKSKLMAAA-VRNKQDLFS--LLGVDYIIAPLKV 311 (394)
Q Consensus 260 ~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS-~R~~~~i~~--laG~D~lTip~~v 311 (394)
....+...++++.+.. +..+++++ +++.+++.+ .+|+|.+.+.-.+
T Consensus 157 -~~~~~~~~i~~i~~~~-----~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai 205 (221)
T PRK01130 157 -PEEPDFALLKELLKAV-----GCPVIAEGRINTPEQAKKALELGAHAVVVGGAI 205 (221)
T ss_pred -CCCcCHHHHHHHHHhC-----CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHh
Confidence 0012455555554432 34455444 446788776 4899998887554
No 181
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=37.23 E-value=1.7e+02 Score=28.69 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC---ChhH----HHHHHHH--HHcCceeeEecccCHHHHHHHHHcCCc
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TWQG----IEASRLL--ESEGIQTHLTFVYSFAQAAAAAQAGAS 232 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa---T~eG----i~A~~~L--~~eGI~vN~TlVFS~~QA~aaa~AGa~ 232 (394)
.|.+..++.++++.+. |+ ++|.|+=.. |++- ++++++- ..-|+|++=|+=+.+.-+++|+++|+.
T Consensus 146 ~~~~~~~~~~~~~~~~----Ga--~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~ 219 (275)
T cd07937 146 HTLEYYVKLAKELEDM----GA--DSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVD 219 (275)
T ss_pred CCHHHHHHHHHHHHHc----CC--CEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 4666666666666554 44 556655221 2222 3333332 123788888999999999999999999
Q ss_pred EEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 233 VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 233 ~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
+|.-=++=+ |+..|-....++..+++..|+++
T Consensus 220 ~vd~sv~Gl-------------------G~~aGN~~~E~l~~~L~~~g~~~ 251 (275)
T cd07937 220 IVDTAISPL-------------------SGGTSQPSTESMVAALRGTGRDT 251 (275)
T ss_pred EEEEecccc-------------------cCCcCChhHHHHHHHHHccCCCC
Confidence 876555433 22345555566666665555443
No 182
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=37.07 E-value=92 Score=29.94 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=66.2
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC-hhHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCC-cEEEe
Q 016178 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST-WQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGA-SVIQI 236 (394)
Q Consensus 161 a~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT-~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa-~~ISp 236 (394)
..|.++.+..++.+++- |++ .|-||-+ +...++|++|.++ ++-+=+-.|.+.+|+..+.+||+ .+|||
T Consensus 21 ~~~~e~a~~~a~Ali~g----Gi~----~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP 92 (211)
T COG0800 21 GDDVEEALPLAKALIEG----GIP----AIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSP 92 (211)
T ss_pred eCCHHHHHHHHHHHHHc----CCC----eEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECC
Confidence 35676666666666653 442 4666654 4668888888876 57777889999999999999997 57788
Q ss_pred chhh-hhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHH
Q 016178 237 FVGR-LRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHK 278 (394)
Q Consensus 237 FVgR-idd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~ 278 (394)
-+.+ +-.....+.. -.-||+.+..++...++.
T Consensus 93 ~~~~ev~~~a~~~~i----------p~~PG~~TptEi~~Ale~ 125 (211)
T COG0800 93 GLNPEVAKAANRYGI----------PYIPGVATPTEIMAALEL 125 (211)
T ss_pred CCCHHHHHHHHhCCC----------cccCCCCCHHHHHHHHHc
Confidence 7754 2222211111 123778777777766554
No 183
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=37.01 E-value=91 Score=30.78 Aligned_cols=83 Identities=23% Similarity=0.278 Sum_probs=50.3
Q ss_pred HHHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHH
Q 016178 200 EASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277 (394)
Q Consensus 200 ~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~ 277 (394)
+|++.+.+. +-.+ .--+.+++|+..|+++|++||-. +++. + ..++++.+.++
T Consensus 172 ~av~~~R~~~~~~~I-gVev~t~eea~~A~~~gaD~I~l--d~~~---------------------p--~~l~~~~~~~~ 225 (272)
T cd01573 172 KALARLRATAPEKKI-VVEVDSLEEALAAAEAGADILQL--DKFS---------------------P--EELAELVPKLR 225 (272)
T ss_pred HHHHHHHHhCCCCeE-EEEcCCHHHHHHHHHcCCCEEEE--CCCC---------------------H--HHHHHHHHHHh
Confidence 444444432 2334 44579999999999999998863 1111 0 11233334444
Q ss_pred HcCCchHHHHhhcCChhhhHh--hhCCCeeccc
Q 016178 278 KYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (394)
Q Consensus 278 ~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip 308 (394)
+...+..+.+...-+.+++.+ .+|+|.+.+.
T Consensus 226 ~~~~~i~i~AsGGI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 226 SLAPPVLLAAAGGINIENAAAYAAAGADILVTS 258 (272)
T ss_pred ccCCCceEEEECCCCHHHHHHHHHcCCcEEEEC
Confidence 433355666666678888876 6899998544
No 184
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=36.70 E-value=1.5e+02 Score=30.09 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHcCc-eeeEecccCH-HHHHH--------HHHcCCcEEEechh
Q 016178 197 QGIEASRLLESEGI-QTHLTFVYSF-AQAAA--------AAQAGASVIQIFVG 239 (394)
Q Consensus 197 eGi~A~~~L~~eGI-~vN~TlVFS~-~QA~a--------aa~AGa~~ISpFVg 239 (394)
+-++|++.+.+.|+ ++|+.++|.+ .|-.. +.+.|+.-|+.|.=
T Consensus 137 ~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l 189 (360)
T TIGR00539 137 NIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYAL 189 (360)
T ss_pred HHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecc
Confidence 45889999999999 5999999985 33322 44568877777653
No 185
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=36.67 E-value=60 Score=31.61 Aligned_cols=87 Identities=26% Similarity=0.359 Sum_probs=63.4
Q ss_pred HhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC-----ChhH-----------HHHHHHHHH
Q 016178 144 LAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-----TWQG-----------IEASRLLES 207 (394)
Q Consensus 144 il~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa-----T~eG-----------i~A~~~L~~ 207 (394)
+.+.++-++-+|..| +++|+.-|.+ +-++.|+ =+|- |.|| -.+++.|.+
T Consensus 58 lr~~~~~~~NlE~a~-----teEml~ia~~---------~kP~~vt-LVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~ 122 (243)
T COG0854 58 LRALIDTRFNLEMAP-----TEEMLAIALK---------TKPHQVT-LVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKN 122 (243)
T ss_pred HHHHcccceecccCc-----hHHHHHHHHh---------cCCCeEE-eCCCchhhcccccchhhhhhhhhHHHHHHHHHh
Confidence 344455578888865 6777443332 2234444 4664 3333 357799999
Q ss_pred cCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhh
Q 016178 208 EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (394)
Q Consensus 208 eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~ 245 (394)
.||+|-+=.==.++|..+|++.|+.+|=.|-|+-.+..
T Consensus 123 ~GirVSLFiD~d~~qi~aa~~~gA~~IELhTG~Ya~~~ 160 (243)
T COG0854 123 AGIRVSLFIDPDPEQIEAAAEVGAPRIELHTGPYADAH 160 (243)
T ss_pred CCCeEEEEeCCCHHHHHHHHHhCCCEEEEecccccccC
Confidence 99999998888999999999999999999999987754
No 186
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=36.65 E-value=1.1e+02 Score=31.62 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=72.5
Q ss_pred cCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcE--EEechhhhhhhhhcCCCCcccchhhccCCCchHHHHH
Q 016178 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASV--IQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (394)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~--ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (394)
+-||+=|+=++... ++++-+--|.+.+.|..|.++|++. ||-.=||-.|+. -+.+....
T Consensus 210 ~~tW~di~wlr~~~--~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~-----------------~~t~~~L~ 270 (367)
T PLN02493 210 TLSWKDVQWLQTIT--KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYV-----------------PATISALE 270 (367)
T ss_pred CCCHHHHHHHHhcc--CCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCc-----------------hhHHHHHH
Confidence 46898776666543 6888888899999999999999875 444444433221 12344444
Q ss_pred HHHHHHHHcCCchHH-HHhhcCChhhhHh--hhCCCeecccHHHHHHHHhCCC
Q 016178 271 KAYNYIHKYGHKSKL-MAAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (394)
Q Consensus 271 ~iy~~~~~~g~~t~v-LaAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~~~ 320 (394)
++.+.+ +.+..| +-..+|+-.+++. .+|+|.+-+.-.++..+...+.
T Consensus 271 ei~~av---~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~ 320 (367)
T PLN02493 271 EVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGE 320 (367)
T ss_pred HHHHHh---CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCH
Confidence 443333 333444 4677899999987 5899999999888888776544
No 187
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=36.46 E-value=4.8e+02 Score=29.64 Aligned_cols=84 Identities=11% Similarity=0.091 Sum_probs=57.7
Q ss_pred eEEEEecCC-ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--hHHHHHHH-HHHcC--ceeeEecccCHHHHH
Q 016178 151 RVSTEVDAR-LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRL-LESEG--IQTHLTFVYSFAQAA 224 (394)
Q Consensus 151 ~VS~EVdp~-la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--eGi~A~~~-L~~eG--I~vN~TlVFS~~QA~ 224 (394)
+|.+|-... --.|++++++|.++|.+.. .+=|-|-+|.-. +.++.|++ |.++| |+.-+-.=|...-|.
T Consensus 95 PI~VQSMt~t~T~D~eatv~Qi~~l~~aG------ceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 168 (733)
T PLN02925 95 PIRIQTMTTTDTKDVEATVDQVMRIADKG------ADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVAL 168 (733)
T ss_pred ceEEEecCCCCcccHHHHHHHHHHHHHcC------CCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHH
Confidence 889985432 3468999999999998863 455667777655 34555544 55566 566777889999999
Q ss_pred HHHHcCCcEEEechhhh
Q 016178 225 AAAQAGASVIQIFVGRL 241 (394)
Q Consensus 225 aaa~AGa~~ISpFVgRi 241 (394)
.|+++ +.=|=.-=|-+
T Consensus 169 ~a~~~-vdkiRINPGN~ 184 (733)
T PLN02925 169 RVAEC-FDKIRVNPGNF 184 (733)
T ss_pred HHHHh-cCCeEECCccc
Confidence 99987 44443333333
No 188
>PRK14017 galactonate dehydratase; Provisional
Probab=36.02 E-value=4e+02 Score=27.17 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=75.8
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEe-cccCH
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYSF 220 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lVFS~ 220 (394)
.+.+.+..-+.+-||++-+.+.+. |.++.+..+++|+ .+|-=|.-...+...++|.+. ++++.+- -+++.
T Consensus 169 avr~~~g~~~~l~vDaN~~w~~~~----A~~~~~~l~~~~~----~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~ 240 (382)
T PRK14017 169 AVREAVGPEIGIGVDFHGRVHKPM----AKVLAKELEPYRP----MFIEEPVLPENAEALPEIAAQTSIPIATGERLFSR 240 (382)
T ss_pred HHHHHhCCCCeEEEECCCCCCHHH----HHHHHHhhcccCC----CeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCH
Confidence 344445445778888887788764 5555444443333 467767766667778888776 5775543 46899
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 221 ~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
.+.....++| +.++.|=++++ -|+..++++.++.+.+|.++
T Consensus 241 ~~~~~li~~~a~d~v~~d~~~~----------------------GGit~~~~ia~~A~~~gi~~ 282 (382)
T PRK14017 241 WDFKRVLEAGGVDIIQPDLSHA----------------------GGITECRKIAAMAEAYDVAL 282 (382)
T ss_pred HHHHHHHHcCCCCeEecCcccc----------------------CCHHHHHHHHHHHHHcCCeE
Confidence 9999888886 67777665554 27888999999888887553
No 189
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=35.90 E-value=2.1e+02 Score=29.48 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=58.6
Q ss_pred hhHHHHHHHHhcCCCCeEEEEecCCcc--CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC---ChhH----HHHHHHH
Q 016178 135 KALVNVGGDLAKMVPGRVSTEVDARLA--YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TWQG----IEASRLL 205 (394)
Q Consensus 135 ~~~v~~g~eil~~v~G~VS~EVdp~la--~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa---T~eG----i~A~~~L 205 (394)
+..++.+++.-..+.|++|.......+ .|.+..++-++++.+. |+ ++|.|+=.. ++.- +++++.-
T Consensus 165 ~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~----Ga--d~I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 165 REVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM----GC--YEISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc----CC--CEEEecCCcCCcCHHHHHHHHHHHHHh
Confidence 344544444323345667766542222 3556666666665554 55 444444211 2222 3333322
Q ss_pred H---HcCceeeEecccCHHHHHHHHHcCCcEEEechhhh
Q 016178 206 E---SEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 206 ~---~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
. .-+++++-|+=+.+.-+++|.++|+.++.-=++=|
T Consensus 239 ~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~Gl 277 (347)
T PLN02746 239 VPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGL 277 (347)
T ss_pred CCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccc
Confidence 1 13788999999999999999999999887766654
No 190
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=35.69 E-value=2.6e+02 Score=27.39 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=63.1
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEE-------ecCChhHHHHHHHHHHc-CceeeEecccCHHHHHHHHHcCC
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK-------IPSTWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGA 231 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIK-------IPaT~eGi~A~~~L~~e-GI~vN~TlVFS~~QA~aaa~AGa 231 (394)
..+.++..++-++.|.++ || +.|=+= +|+..+--.+++.|... +.++ ..++-.......|.++|.
T Consensus 15 ~~~s~e~K~~i~~~L~~~----Gv--~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~-~~~~~~~~dv~~A~~~g~ 87 (274)
T cd07938 15 TFIPTEDKIELIDALSAA----GL--RRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRY-SALVPNLRGAERALAAGV 87 (274)
T ss_pred CCcCHHHHHHHHHHHHHc----CC--CEEEeCCCCCcccccccCCHHHHHhhcccCCCCEE-EEECCCHHHHHHHHHcCc
Confidence 456667666666666665 34 233332 56544322455555432 4443 233456777888889999
Q ss_pred cEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchH
Q 016178 232 SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK 284 (394)
Q Consensus 232 ~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~ 284 (394)
..+-.|++==+-+...+... ....-+..+.++.++.+++|...+
T Consensus 88 ~~i~i~~~~Sd~~~~~~~~~---------s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 88 DEVAVFVSASETFSQKNINC---------SIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred CEEEEEEecCHHHHHHHcCC---------CHHHHHHHHHHHHHHHHHCCCeEE
Confidence 98888876544433322221 012356778888888888887653
No 191
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=35.61 E-value=4.7e+02 Score=26.24 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHH----HHh---hcCCCCCCcEEEEecC--------ChhHHHH
Q 016178 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLL----KLY---SEIDVPPERLLFKIPS--------TWQGIEA 201 (394)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~----~l~---~~~gi~~~nvlIKIPa--------T~eGi~A 201 (394)
+.++.+.+.+.++-+|.+-+.|.+. |..++.+.+++.- .+. ....++.++.-. +|. -+..++.
T Consensus 151 ~~eiv~~v~~~~~iPv~vKl~p~~~-~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~-~~~~glSG~~~~~~al~~ 228 (325)
T cd04739 151 YLDILRAVKSAVTIPVAVKLSPFFS-ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEV-VPNLLLSSPAEIRLPLRW 228 (325)
T ss_pred HHHHHHHHHhccCCCEEEEcCCCcc-CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccce-ecCCCcCCccchhHHHHH
Confidence 4455556666666789998888653 4444444433210 000 000111111000 011 0123566
Q ss_pred HHHHHHc-CceeeEe-cccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHc
Q 016178 202 SRLLESE-GIQTHLT-FVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKY 279 (394)
Q Consensus 202 ~~~L~~e-GI~vN~T-lVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~ 279 (394)
++++.+. +|++-.. -|+|.+.|..+..+||+.|..+-+=+.+ |.+.--...+.+-++++++
T Consensus 229 v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~-----------------gp~~~~~i~~~L~~~l~~~ 291 (325)
T cd04739 229 IAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH-----------------GPDYIGTLLAGLEAWMEEH 291 (325)
T ss_pred HHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc-----------------CchHHHHHHHHHHHHHHHc
Confidence 6777654 6777744 5999999999999999999988444421 1111234556666777888
Q ss_pred CCch
Q 016178 280 GHKS 283 (394)
Q Consensus 280 g~~t 283 (394)
|+++
T Consensus 292 g~~~ 295 (325)
T cd04739 292 GYES 295 (325)
T ss_pred CCCC
Confidence 8765
No 192
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=35.50 E-value=2.4e+02 Score=27.46 Aligned_cols=134 Identities=15% Similarity=0.187 Sum_probs=72.4
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC-ChhHHHHHHHHHHcCc-eeeEeccc----------CHHHHHHHH
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESEGI-QTHLTFVY----------SFAQAAAAA 227 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa-T~eGi~A~~~L~~eGI-~vN~TlVF----------S~~QA~aaa 227 (394)
..++++..++-++.|.++ || +.|=+=.|+ .+.-.++++.|.+.+. ++.....- .......+.
T Consensus 15 ~~~s~e~k~~i~~~L~~~----Gv--~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 88 (273)
T cd07941 15 ISFSVEDKLRIARKLDEL----GV--DYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALL 88 (273)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHH
Confidence 445666666665555554 45 344444444 4455666777766553 22222111 111344577
Q ss_pred HcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHh----hcCC-hhhhHh----
Q 016178 228 QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAA----AVRN-KQDLFS---- 298 (394)
Q Consensus 228 ~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaA----S~R~-~~~i~~---- 298 (394)
++|+..|-.|++-=+-+.+.+.+ ...+.-+..++++.++.+++|++..+-.- +.|. .+.+.+
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~---------~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~ 159 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALG---------TTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKA 159 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHH
Confidence 88998888887644333222111 01123578888999999999886544211 2243 333332
Q ss_pred --hhCCCeeccc
Q 016178 299 --LLGVDYIIAP 308 (394)
Q Consensus 299 --laG~D~lTip 308 (394)
.+|+|.+.++
T Consensus 160 ~~~~g~~~i~l~ 171 (273)
T cd07941 160 AAEAGADWLVLC 171 (273)
T ss_pred HHhCCCCEEEEe
Confidence 4799988664
No 193
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=35.21 E-value=2.9e+02 Score=28.94 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=47.8
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eeEe
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THLT 215 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~T 215 (394)
.+++|++|..- | ++.++ +.++.|+ .+|.|-|=+.. .-++|++.|.+.|+. +|+.
T Consensus 139 eitie~np~~l-~-~e~l~-------~lk~~G~--~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~d 207 (455)
T TIGR00538 139 EISIEIDPRYI-T-KDVID-------ALRDEGF--NRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINID 207 (455)
T ss_pred eEEEEeccCcC-C-HHHHH-------HHHHcCC--CEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEe
Confidence 68999988643 2 22222 2333344 46666554432 347899999999995 8999
Q ss_pred cccCH-HHHH--------HHHHcCCcEEEec
Q 016178 216 FVYSF-AQAA--------AAAQAGASVIQIF 237 (394)
Q Consensus 216 lVFS~-~QA~--------aaa~AGa~~ISpF 237 (394)
++|.+ .|-. .+.+.|+.-|+.|
T Consensus 208 li~GlPgqt~e~~~~tl~~~~~l~~~~is~y 238 (455)
T TIGR00538 208 LIYGLPKQTKESFAKTLEKVAELNPDRLAVF 238 (455)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 99982 2322 2345588777776
No 194
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=35.16 E-value=4.3e+02 Score=25.69 Aligned_cols=44 Identities=18% Similarity=0.025 Sum_probs=33.0
Q ss_pred HHHHHHHHHHc-CceeeE-ecccCHHHHHHHHHcCCcEEEechhhh
Q 016178 198 GIEASRLLESE-GIQTHL-TFVYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 198 Gi~A~~~L~~e-GI~vN~-TlVFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
.++.++++.+. +|++-. .-|++.+++..+.++||+.|+..=+=+
T Consensus 219 ~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l 264 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANF 264 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhh
Confidence 45777777664 677665 457899999999999998887764433
No 195
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=34.85 E-value=67 Score=31.64 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHH
Q 016178 197 QGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (394)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (394)
.-++.+|++...+..+ .--+-+++|+..|.++|++||.. +.+ +...++++.+..
T Consensus 170 ~~v~~~r~~~~~~~~I-gvev~s~eea~~A~~~gaDyI~l--d~~-----------------------~~e~l~~~~~~~ 223 (268)
T cd01572 170 EAVRRARAAAPFTLKI-EVEVETLEQLKEALEAGADIIML--DNM-----------------------SPEELREAVALL 223 (268)
T ss_pred HHHHHHHHhCCCCCeE-EEEECCHHHHHHHHHcCCCEEEE--CCc-----------------------CHHHHHHHHHHc
Confidence 3455666654433333 23346899999999999999875 111 233444444443
Q ss_pred HHcCCchHHHHhhcCChhhhHh--hhCCCeeccc
Q 016178 277 HKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (394)
Q Consensus 277 ~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip 308 (394)
+. +..+.+...-|.+++.+ .+|+|.+.+.
T Consensus 224 ~~---~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~ 254 (268)
T cd01572 224 KG---RVLLEASGGITLENIRAYAETGVDYISVG 254 (268)
T ss_pred CC---CCcEEEECCCCHHHHHHHHHcCCCEEEEE
Confidence 22 45566666778888865 6899988543
No 196
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=34.84 E-value=1e+02 Score=29.25 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEecCCh-----hHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhh
Q 016178 167 IIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----QGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 167 ~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~-----eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
++++++.+++..-++ |=+=+|. .--+-+++..+++ ..-+-=|-+++.++.|.++|+++|+.=.+-.
T Consensus 53 T~~ev~~l~~aGadI--------IAlDaT~R~Rp~~l~~li~~i~~~~-~l~MADist~ee~~~A~~~G~D~I~TTLsGY 123 (192)
T PF04131_consen 53 TLKEVDALAEAGADI--------IALDATDRPRPETLEELIREIKEKY-QLVMADISTLEEAINAAELGFDIIGTTLSGY 123 (192)
T ss_dssp SHHHHHHHHHCT-SE--------EEEE-SSSS-SS-HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTS
T ss_pred CHHHHHHHHHcCCCE--------EEEecCCCCCCcCHHHHHHHHHHhC-cEEeeecCCHHHHHHHHHcCCCEEEcccccC
Confidence 467788887764222 2232332 1233445666677 6667778999999999999999999875443
Q ss_pred hhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHH
Q 016178 242 RDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKV 311 (394)
Q Consensus 242 dd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~v 311 (394)
.... .+..|-+.+++++.+ . +.+ -+.---+.+++++.+ .+||+.+++.-.+
T Consensus 124 T~~t--------------~~~~pD~~lv~~l~~---~-~~p-vIaEGri~tpe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 124 TPYT--------------KGDGPDFELVRELVQ---A-DVP-VIAEGRIHTPEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp STTS--------------TTSSHHHHHHHHHHH---T-TSE-EEEESS--SHHHHHHHHHTT-SEEEE-HHH
T ss_pred CCCC--------------CCCCCCHHHHHHHHh---C-CCc-EeecCCCCCHHHHHHHHhcCCeEEEECccc
Confidence 3221 113577888887754 2 222 122344556888877 6999998775443
No 197
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.79 E-value=3.9e+02 Score=28.39 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=38.4
Q ss_pred HHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCH----------HHHHHHHHcCCcEEE
Q 016178 176 KLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSF----------AQAAAAAQAGASVIQ 235 (394)
Q Consensus 176 ~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~----------~QA~aaa~AGa~~IS 235 (394)
+...+.|++.=||.+.+--...-.++++...+.|..+.+++.|+. +-+..+.++|+..|+
T Consensus 103 ~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~ 172 (448)
T PRK12331 103 QKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSIC 172 (448)
T ss_pred HHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 333455776556666554444556678888888998887776655 345556677887654
No 198
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=34.77 E-value=1.6e+02 Score=28.71 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcEEEEecC----C----hhHHHHHHHHHHcCceeeEec
Q 016178 164 THGIIRKVHDLLKLYSEIDVPPERLLFKIPS----T----WQGIEASRLLESEGIQTHLTF 216 (394)
Q Consensus 164 ~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa----T----~eGi~A~~~L~~eGI~vN~Tl 216 (394)
.+++++.+++.++...+.|++++++++=--. | ++-|+.++.|.+.|.++.+-+
T Consensus 145 ~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pil~G~ 205 (257)
T cd00739 145 VDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPVLVGA 205 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 5788888999999999999999999886432 2 123888888888888875544
No 199
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=34.56 E-value=46 Score=32.20 Aligned_cols=138 Identities=10% Similarity=0.089 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhh
Q 016178 163 DTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLR 242 (394)
Q Consensus 163 D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRid 242 (394)
|.+-|+++-.+.+..|.+.|. +.|.|=+=+|..-.+.++.+.+.|+++-+-+.+++..-+... -||++.+|
T Consensus 72 DvHLMv~~P~~~i~~~~~aGa--d~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i-------~~~l~~vD 142 (228)
T PRK08091 72 DVHLMVRDQFEVAKACVAAGA--DIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLL-------EPYLDQID 142 (228)
T ss_pred EEEeccCCHHHHHHHHHHhCC--CEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHH-------HHHHhhcC
Confidence 444455555555555655555 678888888877778888888889844444444443222211 12333222
Q ss_pred hhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 243 DWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 243 d~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
--.- -..+++.. . ..-....+.-++++.++++++++++.+-+-..-|.+++-. .+|+|.+.+.-.++
T Consensus 143 ~VLi-MtV~PGfg-G-Q~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 143 LIQI-LTLDPRTG-T-KAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred EEEE-EEECCCCC-C-ccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhh
Confidence 1000 00000000 0 0001235677888888888889888888888888888865 69999988775554
No 200
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=34.23 E-value=3.5e+02 Score=29.84 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=37.7
Q ss_pred HHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEeccc--CH--------HHHHHHHHcCCcEEE
Q 016178 174 LLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVY--SF--------AQAAAAAQAGASVIQ 235 (394)
Q Consensus 174 l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVF--S~--------~QA~aaa~AGa~~IS 235 (394)
.++...+.|++.=||...+---..-..+++...+.|..+-+++.| ++ +-+..+.++|+..|+
T Consensus 102 ~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~ 173 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLC 173 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEE
Confidence 445555667866566643322234456777777889887767666 44 334455677877654
No 201
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=33.27 E-value=2.1e+02 Score=29.91 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEecC---ChhHHHHHHHHHHcC--ceeeEecccC-HHH--HHHHHHcCCcEEEechhh
Q 016178 169 RKVHDLLKLYSEIDVPPERLLFKIPS---TWQGIEASRLLESEG--IQTHLTFVYS-FAQ--AAAAAQAGASVIQIFVGR 240 (394)
Q Consensus 169 ~eA~~l~~l~~~~gi~~~nvlIKIPa---T~eGi~A~~~L~~eG--I~vN~TlVFS-~~Q--A~aaa~AGa~~ISpFVgR 240 (394)
++|.++.+..... ...+|||=- ...|.+.++.|.+.| ..+-+-|-+. ... +..++++|+.++++-..
T Consensus 185 ~~A~~i~~~l~~~----~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~e- 259 (391)
T PRK13307 185 EEVERVLSQLPKS----DHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGL- 259 (391)
T ss_pred HHHHHHHHhcccc----cceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEecc-
Confidence 5777777763211 134789853 238999999999987 4454544433 222 33678999988876521
Q ss_pred hhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecc
Q 016178 241 LRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIA 307 (394)
Q Consensus 241 idd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTi 307 (394)
.+...++++.+..+++|.+..+=.-...+..+.++ +.|+|++.+
T Consensus 260 -----------------------a~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vll 305 (391)
T PRK13307 260 -----------------------APISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVEL 305 (391)
T ss_pred -----------------------CCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEE
Confidence 24455677777778877554330111233434443 567777643
No 202
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=32.77 E-value=2.2e+02 Score=29.52 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=66.8
Q ss_pred CChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCc---hHHHHH
Q 016178 194 STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDP---ALSLVS 270 (394)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~---Gv~~v~ 270 (394)
+.|.-| .+...+.+|+|-+--|+|.+.|..+.++||+.|. +||--... ... .+..+ -| .+.-+.
T Consensus 175 ~~p~~l--~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~--~G~gg~~~----~~~----~lg~~-~p~~~ai~d~~ 241 (369)
T TIGR01304 175 GEPLNL--KEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVI--VGPGGANT----TRL----VLGIE-VPMATAIADVA 241 (369)
T ss_pred CCHHHH--HHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEE--ECCCCCcc----ccc----ccCCC-CCHHHHHHHHH
Confidence 345433 3333455899987779999999999999999887 66533211 000 00000 12 222232
Q ss_pred HHH-HHHHHcC--CchHHHHhhcCChhhhHh--hhCCCeecccHHHHHHHH
Q 016178 271 KAY-NYIHKYG--HKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSLK 316 (394)
Q Consensus 271 ~iy-~~~~~~g--~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl~~L~ 316 (394)
.+. +|+++.+ +-..+..-.+++..++.+ .+|+|.+.+.-.++..-.
T Consensus 242 ~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 242 AARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAE 292 (369)
T ss_pred HHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhc
Confidence 222 2555555 233344667889999987 699999998887766543
No 203
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=32.31 E-value=5.1e+02 Score=25.68 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=71.1
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhc-CCCCCCc-EEEEecCChhHHHHHHHHHHc-CceeeEec-cc
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSE-IDVPPER-LLFKIPSTWQGIEASRLLESE-GIQTHLTF-VY 218 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~-~gi~~~n-vlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-VF 218 (394)
.+.+.++..+.+-||++-+.+.+. |.++.+..++ .| -+ -+|-=|.... +.++.|... ++++-+.- ++
T Consensus 146 ~vr~~~g~~~~l~vDaN~~w~~~~----A~~~~~~l~~~~~---~~i~~iEqP~~~~--~~~~~l~~~~~~Pia~dEs~~ 216 (307)
T TIGR01927 146 LLLEALPDKAELRLDANGGLSPDE----AQQFLKALDPNLR---GRIAFLEEPLPDA--DEMSAFSEATGTAIALDESLW 216 (307)
T ss_pred HHHHHcCCCCeEEEeCCCCCCHHH----HHHHHHhcccccC---CCceEEeCCCCCH--HHHHHHHHhCCCCEEeCCCcC
Confidence 444445445888889887777754 4444444332 00 12 3666666433 556666554 77776654 68
Q ss_pred CHHHHHHHHHcCC-cEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 219 SFAQAAAAAQAGA-SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 219 S~~QA~aaa~AGa-~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
+..+.....+.|+ .++.+-+.++ -|+..++++.++.+.+|.+.
T Consensus 217 ~~~d~~~~~~~~~~d~i~ik~~~~----------------------GGi~~~~~i~~~a~~~gi~~ 260 (307)
T TIGR01927 217 ELPQLADEYGPGWRGALVIKPAII----------------------GSPAKLRDLAQKAHRLGLQA 260 (307)
T ss_pred ChHHHHHHHhcCCCceEEECchhc----------------------CCHHHHHHHHHHHHHcCCCE
Confidence 8888888888774 6777666553 27888999999888887554
No 204
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=32.07 E-value=3.9e+02 Score=24.19 Aligned_cols=113 Identities=9% Similarity=0.088 Sum_probs=64.1
Q ss_pred cEEEEecCChhHHHHHHHHHHcCceeeEecc-cCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCch
Q 016178 187 RLLFKIPSTWQGIEASRLLESEGIQTHLTFV-YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPA 265 (394)
Q Consensus 187 nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlV-FS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~G 265 (394)
-|.+=.-.+.+=.+.++.+.+.|+..=+++- .+..+.......++.++- |.++ .. + ..+. .. ...+
T Consensus 82 gv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~-~~~~-~~-g--~tg~-----~~---~~~~ 148 (210)
T TIGR01163 82 IITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVL-LMSV-NP-G--FGGQ-----KF---IPDT 148 (210)
T ss_pred EEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEE-EEEE-cC-C--CCcc-----cc---cHHH
Confidence 3444333344456777888888887644422 234555555555677653 2221 10 0 0010 00 1236
Q ss_pred HHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 266 LSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 266 v~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
+..++++.++..++++...++++..-+.+++-+ ..|+|.+.+.-.++
T Consensus 149 ~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 149 LEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred HHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHh
Confidence 666777777666555445566766667888866 58999998876654
No 205
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=31.95 E-value=2.2e+02 Score=27.14 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHH
Q 016178 199 IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHK 278 (394)
Q Consensus 199 i~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~ 278 (394)
+..++++-..+--+=++.+-|.+++..|.+.|++|+.. |-+....+ ... .-.|+...+.+.+.
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~--Gpv~t~tK--~~~----------~p~gl~~l~~~~~~--- 162 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFF--GKLGADNK--PEA----------HPRNLSLAEWWAEM--- 162 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEE--CCCCCCCC--CCC----------CCCChHHHHHHHHh---
Confidence 55555554444444455567889998888999999853 33321111 100 11256555543221
Q ss_pred cCCchHHHHhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 279 YGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 279 ~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
.+..|.+=..-+.+++-+ .+|+|-+.+--.++
T Consensus 163 --~~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~ 196 (221)
T PRK06512 163 --IEIPCIVQAGSDLASAVEVAETGAEFVALERAVF 196 (221)
T ss_pred --CCCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhh
Confidence 234455555667777765 57888876655544
No 206
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=31.91 E-value=2.4e+02 Score=29.10 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=51.2
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC--------------hhHHHHHHHHHHcCceeeEe
Q 016178 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST--------------WQGIEASRLLESEGIQTHLT 215 (394)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT--------------~eGi~A~~~L~~eGI~vN~T 215 (394)
-.|++|.+|..-.+ + ..+.+.+.|+ .||-|-|=+. .+-.++++.+.+.+.++|+.
T Consensus 109 ~eit~E~~p~~~~~-----e----~L~~l~~~Gv--nrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~d 177 (394)
T PRK08898 109 AEITLEANPGTFEA-----E----KFAQFRASGV--NRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLD 177 (394)
T ss_pred CeEEEEECCCCCCH-----H----HHHHHHHcCC--CeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 37899998864321 1 2223344556 4666655443 24567777777778999999
Q ss_pred cccCH-HHH--------HHHHHcCCcEEEechhhhh
Q 016178 216 FVYSF-AQA--------AAAAQAGASVIQIFVGRLR 242 (394)
Q Consensus 216 lVFS~-~QA--------~aaa~AGa~~ISpFVgRid 242 (394)
+||.+ -|. ..+.+.|+.-||.|-=.+.
T Consensus 178 lI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~ 213 (394)
T PRK08898 178 LMYALPGQTLDEALADVETALAFGPPHLSLYHLTLE 213 (394)
T ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEEC
Confidence 99986 232 2344568888877754443
No 207
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=31.86 E-value=1.6e+02 Score=26.98 Aligned_cols=66 Identities=26% Similarity=0.218 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEE
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVI 234 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~I 234 (394)
.|.+..++.++.+.+- |++ .|-|-. .+...++.++.+.++ ++.+.+..|.+..|+..|.++|+.++
T Consensus 13 ~~~~~~~~~~~~l~~~----G~~--~vev~~-~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i 80 (190)
T cd00452 13 DDAEDALALAEALIEG----GIR--AIEITL-RTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFI 80 (190)
T ss_pred CCHHHHHHHHHHHHHC----CCC--EEEEeC-CChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE
Confidence 4566566665555543 453 333332 144567777888776 38889999999999999999999876
No 208
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=31.59 E-value=21 Score=18.99 Aligned_cols=7 Identities=57% Similarity=1.673 Sum_probs=5.1
Q ss_pred hhCCCCC
Q 016178 387 KMWPPPN 393 (394)
Q Consensus 387 ~~~~~~~ 393 (394)
-.||||-
T Consensus 3 pfw~ppi 9 (12)
T PF08248_consen 3 PFWPPPI 9 (12)
T ss_pred ccCCCCc
Confidence 3699983
No 209
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=31.53 E-value=3.4e+02 Score=27.91 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccC--CHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC-hhHHHHHHHHHHcCceee
Q 016178 137 LVNVGGDLAKMVPGRVSTEVDARLAY--DTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST-WQGIEASRLLESEGIQTH 213 (394)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~--D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT-~eGi~A~~~L~~eGI~vN 213 (394)
++...+.+....+..+++==-|..+| +.+..++.|.+|++-. .=..|||=.. .+-+++++.|.+.||+|.
T Consensus 83 mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~ea-------Ga~aVKlEGg~~~~~~~I~~l~~~GIPV~ 155 (332)
T PLN02424 83 MLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEG-------GMDAVKLEGGSPSRVTAAKAIVEAGIAVM 155 (332)
T ss_pred HHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHh-------CCcEEEECCCcHHHHHHHHHHHHcCCCEE
Confidence 44455567777777776633455545 6888999999886632 2367999988 778899999999999998
No 210
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=31.19 E-value=5.5e+02 Score=28.54 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=56.9
Q ss_pred eEEEEecCC-ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--hHHHHHH-HHHHcC--ceeeEecccCHHHHH
Q 016178 151 RVSTEVDAR-LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASR-LLESEG--IQTHLTFVYSFAQAA 224 (394)
Q Consensus 151 ~VS~EVdp~-la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--eGi~A~~-~L~~eG--I~vN~TlVFS~~QA~ 224 (394)
+|++|-... -..|++++++|.++|.+.. .+=|-|-+|.-. +.++.|+ .|.+.| |++-+-.=|...=|.
T Consensus 30 PI~VQSMt~t~T~D~~atv~Qi~~L~~aG------ceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~ 103 (606)
T PRK00694 30 SIKIQSMTTTATTDVDGTVRQICALQEWG------CDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAM 103 (606)
T ss_pred ceEEEecCCCCcccHHHHHHHHHHHHHcC------CCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHH
Confidence 899995432 2468999999999998863 455667777554 3344443 345556 555667789999999
Q ss_pred HHHHcCCcEEEechhhhh
Q 016178 225 AAAQAGASVIQIFVGRLR 242 (394)
Q Consensus 225 aaa~AGa~~ISpFVgRid 242 (394)
.|+++ +.=|=.-=|-+-
T Consensus 104 ~a~~~-vdkiRINPGNi~ 120 (606)
T PRK00694 104 HVADF-VDKVRINPGNYV 120 (606)
T ss_pred HHHHh-cCceEECCcccC
Confidence 99988 544444444443
No 211
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=31.17 E-value=4.2e+02 Score=25.59 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC-ChhHHHHHHHHHHcCceeeEecc--cCHHHHHHHHHcC----CcE
Q 016178 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESEGIQTHLTFV--YSFAQAAAAAQAG----ASV 233 (394)
Q Consensus 161 a~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa-T~eGi~A~~~L~~eGI~vN~TlV--FS~~QA~aaa~AG----a~~ 233 (394)
.+.++..++-++.|.+. || +.|=+=-|. .+.-.+.++.|.+..=++.+..+ -...-...+.++| ...
T Consensus 16 ~~~~~~k~~i~~~L~~~----Gv--~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 16 SLTPEEKLEIARQLDEL----GV--DVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCCHHHHHHHHHHHHHc----CC--CEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCE
Confidence 45566555555555544 44 444444565 34445666666654222222222 2344455566777 888
Q ss_pred EEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHH--HHhhcCChhhhHh------hhCCCee
Q 016178 234 IQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL--MAAAVRNKQDLFS------LLGVDYI 305 (394)
Q Consensus 234 ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~v--LaAS~R~~~~i~~------laG~D~l 305 (394)
|..|++-=+-+..++.. ...+.-+..+.++.++.++.|++..+ +-++-.+++.+.+ .+|+|.+
T Consensus 90 i~i~~~~s~~~~~~~~~---------~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i 160 (268)
T cd07940 90 IHTFIATSDIHLKYKLK---------KTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTI 160 (268)
T ss_pred EEEEecCCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 88887533322222111 11123567788888888888765321 1122123333332 4788887
Q ss_pred cccH
Q 016178 306 IAPL 309 (394)
Q Consensus 306 Tip~ 309 (394)
.++.
T Consensus 161 ~l~D 164 (268)
T cd07940 161 NIPD 164 (268)
T ss_pred EECC
Confidence 6643
No 212
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=30.16 E-value=3.3e+02 Score=29.53 Aligned_cols=134 Identities=14% Similarity=0.177 Sum_probs=76.0
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC-ChhHHHHHHHHHHcCc-eeeEeccc-C---------HHHHHHHH
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESEGI-QTHLTFVY-S---------FAQAAAAA 227 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa-T~eGi~A~~~L~~eGI-~vN~TlVF-S---------~~QA~aaa 227 (394)
..+++++.++-|+.|.++ || +.|=+=.|+ ++.-.++++.+.+.+. ++.++..- . -.-..++.
T Consensus 22 ~~~s~e~Kl~ia~~L~~~----Gv--d~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~ 95 (524)
T PRK12344 22 ISFSVEDKLRIARKLDEL----GV--DYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALL 95 (524)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHH
Confidence 556777777777766665 45 455555565 4455777777776553 22222211 1 11223456
Q ss_pred HcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHh----hcCC-hhhhHh----
Q 016178 228 QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAA----AVRN-KQDLFS---- 298 (394)
Q Consensus 228 ~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaA----S~R~-~~~i~~---- 298 (394)
++|+..|..|++-=+-+.+.+.. ...+.-+..++++.++.+++|.+..+=.- +.|. ++-+++
T Consensus 96 ~~g~~~i~i~~~~Sd~h~~~~l~---------~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~ 166 (524)
T PRK12344 96 DAGTPVVTIFGKSWDLHVTEALR---------TTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKA 166 (524)
T ss_pred hCCCCEEEEEECCCHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHH
Confidence 78999999997643333222221 11123578888999999999876533111 2333 333332
Q ss_pred --hhCCCeeccc
Q 016178 299 --LLGVDYIIAP 308 (394)
Q Consensus 299 --laG~D~lTip 308 (394)
.+|+|.+.+|
T Consensus 167 ~~~~Gad~i~l~ 178 (524)
T PRK12344 167 AAEAGADWVVLC 178 (524)
T ss_pred HHhCCCCeEEEc
Confidence 5899998777
No 213
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=29.77 E-value=5.1e+02 Score=28.56 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=39.0
Q ss_pred HHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCH------HH----HHHHHHcCCcEEE
Q 016178 175 LKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSF------AQ----AAAAAQAGASVIQ 235 (394)
Q Consensus 175 ~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~------~Q----A~aaa~AGa~~IS 235 (394)
++...+.|++.=|++..+--...-..+++...+.|..|.+++.|+. +. +..+.++|+..|+
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~ 167 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSIC 167 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3344455776555665554445667788888888999998877553 33 3445567876554
No 214
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=29.30 E-value=1.5e+02 Score=28.92 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCcEEEech
Q 016178 220 FAQAAAAAQAGASVIQIFV 238 (394)
Q Consensus 220 ~~QA~aaa~AGa~~ISpFV 238 (394)
.+||++-++.||+.||+.-
T Consensus 94 ae~A~~Yak~GAs~iSVLT 112 (289)
T KOG4201|consen 94 AEQALAYAKGGASCISVLT 112 (289)
T ss_pred HHHHHHHHhcCceeeeeec
Confidence 5899999999999999864
No 215
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.17 E-value=4.6e+02 Score=25.74 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCC--CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEE----------Eec----CChhHHH
Q 016178 137 LVNVGGDLAKMV--PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLF----------KIP----STWQGIE 200 (394)
Q Consensus 137 ~v~~g~eil~~v--~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlI----------KIP----aT~eGi~ 200 (394)
+.++.+++.+.+ +-+|.+-+++....+.--+.+++.++.+..++.|++ -|-| .++ .....+.
T Consensus 194 ~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHH
Confidence 344445555555 237888777643221111234444455555555542 2211 000 0012234
Q ss_pred HHHHHHHc-CceeeEec-ccCHHHHHHHHHc-CCcEEEec
Q 016178 201 ASRLLESE-GIQTHLTF-VYSFAQAAAAAQA-GASVIQIF 237 (394)
Q Consensus 201 A~~~L~~e-GI~vN~Tl-VFS~~QA~aaa~A-Ga~~ISpF 237 (394)
.++.+.+. ++++-++- +.+.+++..+.++ |+++|+.-
T Consensus 272 ~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 272 LAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred HHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 44444443 66766654 5679999999998 68887763
No 216
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=29.06 E-value=6.2e+02 Score=25.62 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=46.9
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eeEe
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THLT 215 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~T 215 (394)
.+++|++|..- | ++ .++.+++.|+ .+|-|-|-+.. +-+++++.+.+.|+. +|+.
T Consensus 88 eit~e~~p~~l-~-~e-------~l~~l~~~G~--~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~d 156 (377)
T PRK08599 88 EFTFEANPGDL-T-KE-------KLQVLKDSGV--NRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISID 156 (377)
T ss_pred EEEEEeCCCCC-C-HH-------HHHHHHHcCC--CEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEe
Confidence 68888887532 2 11 2223333444 35555554432 458888999999997 8999
Q ss_pred cccCH-HHH--------HHHHHcCCcEEEec
Q 016178 216 FVYSF-AQA--------AAAAQAGASVIQIF 237 (394)
Q Consensus 216 lVFS~-~QA--------~aaa~AGa~~ISpF 237 (394)
++|.+ .|. ..+.+.|+.-|+.|
T Consensus 157 li~GlPgqt~~~~~~~l~~~~~l~~~~i~~y 187 (377)
T PRK08599 157 LIYALPGQTIEDFKESLAKALALDIPHYSAY 187 (377)
T ss_pred eecCCCCCCHHHHHHHHHHHHccCCCEEeee
Confidence 99985 332 22445677777766
No 217
>PRK13561 putative diguanylate cyclase; Provisional
Probab=28.99 E-value=5.9e+02 Score=27.54 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=79.1
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh------hHHHHHHHHHHcCceeeEecc----c
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW------QGIEASRLLESEGIQTHLTFV----Y 218 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~------eGi~A~~~L~~eGI~vN~TlV----F 218 (394)
+.+|++-+++.--.|. ..++ ++....++.|++++++++-|+.+- .-...++.|.+.|+++-+-=. -
T Consensus 485 ~~~~~iNlS~~~l~~~-~f~~---~l~~~l~~~~~~~~~l~lEi~E~~~~~~~~~~~~~~~~l~~~G~~i~lddfG~g~s 560 (651)
T PRK13561 485 MLPLSVNLSALQLMHP-NMVA---DMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYA 560 (651)
T ss_pred CceEEEECCHHHHCCc-hHHH---HHHHHHHHcCCChHHEEEEEchhhhhcCHHHHHHHHHHHHHCCCEEEEECCCCCcc
Confidence 4578888887644443 3333 356666677899999999999764 446778999999999865311 1
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh
Q 016178 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (394)
Q Consensus 219 S~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~ 298 (394)
|+..-..-...+.+|+=. |. .+-.+-+..-..++.+.+..+..| .+|++-.+-+.++...
T Consensus 561 sl~~L~~l~~l~~d~lKi-----D~-------------s~i~~i~~~~~~v~~i~~~a~~l~--i~viAegVE~~~~~~~ 620 (651)
T PRK13561 561 GLRQLQHMKSLPIDVLKI-----DK-------------MFVDGLPEDDSMVAAIIMLAQSLN--LQVIAEGVETEAQRDW 620 (651)
T ss_pred cHHHHhhcCCCCCcEEEE-----CH-------------HHHhcCCCCHHHHHHHHHHHHHCC--CcEEEecCCCHHHHHH
Confidence 111110001112222221 11 111100011245777777777665 5678888888777754
Q ss_pred --hhCCCeecc
Q 016178 299 --LLGVDYIIA 307 (394)
Q Consensus 299 --laG~D~lTi 307 (394)
.+|||++..
T Consensus 621 l~~~g~d~~QG 631 (651)
T PRK13561 621 LLKAGVGIAQG 631 (651)
T ss_pred HHhcCCCEEeC
Confidence 699998753
No 218
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=28.83 E-value=1.7e+02 Score=30.19 Aligned_cols=49 Identities=24% Similarity=0.181 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHcCceeeE-ecccCHHHHHHHHHcCCcEEEechhhhhhh
Q 016178 196 WQGIEASRLLESEGIQTHL-TFVYSFAQAAAAAQAGASVIQIFVGRLRDW 244 (394)
Q Consensus 196 ~eGi~A~~~L~~eGI~vN~-TlVFS~~QA~aaa~AGa~~ISpFVgRidd~ 244 (394)
....++++.|.++||.+.+ ---=+.+|+..|.++|++.+.-+.|-+.-.
T Consensus 177 ~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~~THlfNaM~~~ 226 (380)
T TIGR00221 177 DQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGATHATHLYNAMSPI 226 (380)
T ss_pred CChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCCeeeeeccCCCCc
Confidence 3467999999999998764 223468999999999999988888877654
No 219
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=28.66 E-value=5.1e+02 Score=24.74 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhH----HHHHHHHHHcCceee
Q 016178 138 VNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG----IEASRLLESEGIQTH 213 (394)
Q Consensus 138 v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eG----i~A~~~L~~eGI~vN 213 (394)
.++.+.+.+ .+-+||+-+.+. .| +.+++-|+.+ ++.|++. |-+=....| +..++++. .+|++-
T Consensus 129 ~eiv~avr~-~~~pVsvKir~g--~~-~~~~~la~~l----~~aG~d~----ihv~~~~~g~~ad~~~I~~i~-~~ipVI 195 (233)
T cd02911 129 SEFIKALKE-TGVPVSVKIRAG--VD-VDDEELARLI----EKAGADI----IHVDAMDPGNHADLKKIRDIS-TELFII 195 (233)
T ss_pred HHHHHHHHh-cCCCEEEEEcCC--cC-cCHHHHHHHH----HHhCCCE----EEECcCCCCCCCcHHHHHHhc-CCCEEE
Confidence 334444443 356899888654 33 4444444444 4455541 222222233 55666664 456654
Q ss_pred E-ecccCHHHHHHHHHcCCcEEEechhhh
Q 016178 214 L-TFVYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 214 ~-TlVFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
. =-|+|.+|+..+.+.|++.|+ |||-
T Consensus 196 gnGgI~s~eda~~~l~~GaD~Vm--iGR~ 222 (233)
T cd02911 196 GNNSVTTIESAKEMFSYGADMVS--VARA 222 (233)
T ss_pred EECCcCCHHHHHHHHHcCCCEEE--EcCC
Confidence 4 468999999999999977654 5654
No 220
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=28.41 E-value=2.3e+02 Score=24.25 Aligned_cols=42 Identities=17% Similarity=0.076 Sum_probs=29.6
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHh-hcCCCCCCcEEEEecC
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLY-SEIDVPPERLLFKIPS 194 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~-~~~gi~~~nvlIKIPa 194 (394)
++++..-..+ +.+..-+-+..|.++. +++||+++||+|+.=.
T Consensus 60 ~~~l~siG~~--~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 60 YVRVEAWGEY--APSKPKMMTPRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred EEEEEEecCc--CHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEc
Confidence 5555542222 5566677777888875 6889999999999653
No 221
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=28.22 E-value=4.1e+02 Score=27.17 Aligned_cols=126 Identities=18% Similarity=0.173 Sum_probs=74.0
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC---------hhHHHHHHH-HHHcCceeeEeccc
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST---------WQGIEASRL-LESEGIQTHLTFVY 218 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT---------~eGi~A~~~-L~~eGI~vN~TlVF 218 (394)
+|+..+=.-|...++.+.+++.|+++.+....+.. --..| |-| .+|++..++ .++.|+.+ +|-+|
T Consensus 91 ~~~~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r---~~~fK-pRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v-~tev~ 165 (335)
T PRK08673 91 GGKPVVIAGPCSVESEEQILEIARAVKEAGAQILR---GGAFK-PRTSPYSFQGLGEEGLKLLAEAREETGLPI-VTEVM 165 (335)
T ss_pred CCceEEEEecCccCCHHHHHHHHHHHHHhchhhcc---CcEec-CCCCCcccccccHHHHHHHHHHHHHcCCcE-EEeeC
Confidence 35566656677778999999999999887644311 11224 333 367887777 44559999 88999
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhh--hhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCC
Q 016178 219 SFAQAAAAAQAGASVIQIFVGRLRDW--ARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGH 281 (394)
Q Consensus 219 S~~QA~aaa~AGa~~ISpFVgRidd~--~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~ 281 (394)
+..|+..+++. +.++..=-.-+.+. .+.-. .....--+.+|-..-+.-...+.+++...|.
T Consensus 166 d~~~~~~l~~~-vd~lqIgAr~~~N~~LL~~va-~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN 228 (335)
T PRK08673 166 DPRDVELVAEY-VDILQIGARNMQNFDLLKEVG-KTNKPVLLKRGMSATIEEWLMAAEYILAEGN 228 (335)
T ss_pred CHHHHHHHHHh-CCeEEECcccccCHHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999876 55444433322221 11000 0000001223322236667777777776653
No 222
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=27.95 E-value=2.1e+02 Score=27.30 Aligned_cols=126 Identities=11% Similarity=0.138 Sum_probs=73.9
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEeccc--CHHHHHHHHHc--CCcEEEechhhhhhhh
Q 016178 170 KVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVY--SFAQAAAAAQA--GASVIQIFVGRLRDWA 245 (394)
Q Consensus 170 eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVF--S~~QA~aaa~A--Ga~~ISpFVgRidd~~ 245 (394)
.-.+++..|.+.|. +.+.|=+=+|..-.+.++...+.|+++=+.+-- .+++..-.... ..-+.|..-|-
T Consensus 69 ~p~~~i~~~~~~ga--d~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGf----- 141 (220)
T PRK08883 69 PVDRIIPDFAKAGA--SMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGF----- 141 (220)
T ss_pred CHHHHHHHHHHhCC--CEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCC-----
Confidence 33344444555555 678888888877667888888888776444332 12221111110 01111111110
Q ss_pred hcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHHH
Q 016178 246 RNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQ 313 (394)
Q Consensus 246 ~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl~ 313 (394)
.+.+ -...++.-++++.++.+++|++..+.+...-|.+++-. .+|+|.+.+.-.+++
T Consensus 142 ---gGq~--------fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 142 ---GGQS--------FIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFG 200 (220)
T ss_pred ---CCce--------ecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhC
Confidence 0000 01247788888888888888877777777788888876 599999988766653
No 223
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=27.89 E-value=5.2e+02 Score=28.31 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=49.0
Q ss_pred EEecCCccCCHHHHHHHHHHHHHHhhcCCCCCC--cEEEEecCCh-----hH-HHHHHHHHH---------cCceeeEec
Q 016178 154 TEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPE--RLLFKIPSTW-----QG-IEASRLLES---------EGIQTHLTF 216 (394)
Q Consensus 154 ~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~--nvlIKIPaT~-----eG-i~A~~~L~~---------eGI~vN~Tl 216 (394)
++.++.-+.+++ .+.+.++.+...+.|.+.. -+.|-||-|- .- -..++.|.+ -++||+=++
T Consensus 171 v~f~~Ed~~r~d--~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~ 248 (564)
T TIGR00970 171 FEYSPESFSDTE--LEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDR 248 (564)
T ss_pred EEEecccCCCCC--HHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCC
Confidence 445544333332 3444445555555555322 2567899875 22 233344432 378888888
Q ss_pred ccCHHHHHHHHHcCCcEEE
Q 016178 217 VYSFAQAAAAAQAGASVIQ 235 (394)
Q Consensus 217 VFS~~QA~aaa~AGa~~IS 235 (394)
=..++-+++|.+||+..+.
T Consensus 249 GlAvANslaAv~aGa~~v~ 267 (564)
T TIGR00970 249 GTAVAAAELGFLAGADRIE 267 (564)
T ss_pred ChHHHHHHHHHHhCCCEEE
Confidence 8999999999999999887
No 224
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=27.63 E-value=8.4e+02 Score=26.70 Aligned_cols=134 Identities=12% Similarity=0.106 Sum_probs=81.4
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh------hHHHHHHHHHHcCceeeEecccC-HHHH
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW------QGIEASRLLESEGIQTHLTFVYS-FAQA 223 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~------eGi~A~~~L~~eGI~vN~TlVFS-~~QA 223 (394)
.+++-++|..-.+.+ ..+. +..+.++.++++.+++|-|+.+. .-...++.|.+.|+++-+.=.-+ ..-.
T Consensus 631 ~~~inls~~~l~~~~-~~~~---l~~~l~~~~~~~~~l~~ei~e~~~~~~~~~~~~~l~~l~~~G~~i~ld~fg~~~~~~ 706 (799)
T PRK11359 631 ALSVNLSALHFRSNQ-LPNQ---VSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGL 706 (799)
T ss_pred eEEEECCHHHhCCch-HHHH---HHHHHHHhCcChHhEEEEEcCchhhcCHHHHHHHHHHHHHCCCEEEEECCCCchhhH
Confidence 589999876433332 2333 55556667888899999998864 34677899999999997653322 1111
Q ss_pred HHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhC
Q 016178 224 AAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLG 301 (394)
Q Consensus 224 ~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG 301 (394)
.......++||-.=-+-+.+.. .....-..++.+.++.+..| .++++-.+-+.++... .+|
T Consensus 707 ~~l~~l~~d~iKid~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~--i~via~gVe~~~~~~~l~~~g 769 (799)
T PRK11359 707 SRLVSLPVTEIKIDKSFVDRCL---------------TEKRILALLEAITSIGQSLN--LTVVAEGVETKEQFEMLRKIH 769 (799)
T ss_pred HHHhhCCCCEEEECHHHHhhcc---------------cChhHHHHHHHHHHHHHHCC--CeEEEEcCCCHHHHHHHHhcC
Confidence 2222334555543322222110 01123445667777777665 6678888888877765 699
Q ss_pred CCee
Q 016178 302 VDYI 305 (394)
Q Consensus 302 ~D~l 305 (394)
||++
T Consensus 770 ~~~~ 773 (799)
T PRK11359 770 CRVI 773 (799)
T ss_pred CCEE
Confidence 9875
No 225
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.47 E-value=5.9e+02 Score=24.88 Aligned_cols=136 Identities=9% Similarity=0.089 Sum_probs=73.5
Q ss_pred cCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceee--EecccCHHHHHHHHHcCCcEE
Q 016178 157 DARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTH--LTFVYSFAQAAAAAQAGASVI 234 (394)
Q Consensus 157 dp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN--~TlVFS~~QA~aaa~AGa~~I 234 (394)
+|-+.+..+..+++ ..+.|+++ =++.-+|- .|.-+..+.+.+.|+..= ++--.+.+.....++....+|
T Consensus 99 N~i~~~G~e~f~~~-------~~~aGvdG-viipDLp~-ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 99 NPIFQYGVERFAAD-------AAEAGVDG-LIIPDLPP-EEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred cHHhhcCHHHHHHH-------HHHcCCcE-EEECCCCH-HHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 55455555544444 44556643 23334443 344455566666776543 333344565555555544444
Q ss_pred EechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh-hhCCCeecccHHHHH
Q 016178 235 QIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS-LLGVDYIIAPLKVLQ 313 (394)
Q Consensus 235 SpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~-laG~D~lTip~~vl~ 313 (394)
- +|+++-..+.+. +..+ .+.+..+.++++.....+++..+++.+++.+ ..++|-+.+.-.+.+
T Consensus 170 Y-~vs~~GvTG~~~------------~~~~---~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGviVGSaiv~ 233 (258)
T PRK13111 170 Y-YVSRAGVTGARS------------ADAA---DLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVIVGSALVK 233 (258)
T ss_pred E-EEeCCCCCCccc------------CCCc---cHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEEEcHHHHH
Confidence 4 256643322100 0011 2233444455544344456888889999987 455999999988888
Q ss_pred HHHh
Q 016178 314 SLKE 317 (394)
Q Consensus 314 ~L~~ 317 (394)
.+.+
T Consensus 234 ~~~~ 237 (258)
T PRK13111 234 IIEE 237 (258)
T ss_pred HHHh
Confidence 7754
No 226
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=27.40 E-value=42 Score=33.80 Aligned_cols=95 Identities=19% Similarity=0.128 Sum_probs=58.3
Q ss_pred CcEEEE---ecCChhHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhcc
Q 016178 186 ERLLFK---IPSTWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKR 260 (394)
Q Consensus 186 ~nvlIK---IPaT~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~ 260 (394)
+-|||| |-+.-.=-+|++.+.+. ..++ .--+=|++|+..|+++|+++|- +|.
T Consensus 180 d~iLikdNHi~~~G~i~~av~~~r~~~~~~kI-eVEv~sleea~ea~~~gaDiI~-----LDn----------------- 236 (296)
T PRK09016 180 DAFLIKENHIIASGSIRQAVEKAFWLHPDVPV-EVEVENLDELDQALKAGADIIM-----LDN----------------- 236 (296)
T ss_pred hhhccCHHHHHHhCcHHHHHHHHHHhCCCCCE-EEEeCCHHHHHHHHHcCCCEEE-----eCC-----------------
Confidence 557888 43322112444444433 2333 3345689999999999997763 221
Q ss_pred CCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccH
Q 016178 261 GEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (394)
Q Consensus 261 ~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~ 309 (394)
--...++++.++.+. +..+.++..-|.+++.+ .+|+|+|.+..
T Consensus 237 ---~s~e~~~~av~~~~~---~~~ieaSGGI~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 237 ---FTTEQMREAVKRTNG---RALLEVSGNVTLETLREFAETGVDFISVGA 281 (296)
T ss_pred ---CChHHHHHHHHhhcC---CeEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 123556666665532 55566666788888876 79999986553
No 227
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.29 E-value=2.2e+02 Score=30.46 Aligned_cols=126 Identities=19% Similarity=0.250 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEecCCh--hHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEEEechhh--
Q 016178 167 IIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGR-- 240 (394)
Q Consensus 167 ~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgR-- 240 (394)
..+.++.|.+. |+ +-|.|-+.--. -=+..+++++++ ++.+-+-=|=+.++|..+.+||+..|.+=+|-
T Consensus 228 ~~~~a~~Lv~a----Gv--d~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gs 301 (479)
T PRK07807 228 VAAKARALLEA----GV--DVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGA 301 (479)
T ss_pred HHHHHHHHHHh----CC--CEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCc
Confidence 33444445443 44 33555433322 236677777776 56776667889999999999999999866654
Q ss_pred hhhhhhcCCCCcccchhhc-cCCCchHHHHHHHHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 241 LRDWARNHSGDPEIDDALK-RGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 241 idd~~~~~~~d~~~~~~~~-~~~d~Gv~~v~~iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
|.... .+. .+ .|=+..+.++.+..++++ ..|| .-.+++..++.. .+|+|.+.+.--+.
T Consensus 302 ictt~-----------~~~~~~-~p~~~av~~~~~~~~~~~--~~via~ggi~~~~~~~~al~~ga~~v~~g~~~a 363 (479)
T PRK07807 302 MCTTR-----------MMTGVG-RPQFSAVLECAAAARELG--AHVWADGGVRHPRDVALALAAGASNVMIGSWFA 363 (479)
T ss_pred ccccc-----------cccCCc-hhHHHHHHHHHHHHHhcC--CcEEecCCCCCHHHHHHHHHcCCCeeeccHhhc
Confidence 33221 000 11 244555666666555554 4455 445777888876 58999988776543
No 228
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.25 E-value=1.1e+02 Score=31.68 Aligned_cols=89 Identities=9% Similarity=0.078 Sum_probs=48.0
Q ss_pred HHHHHHHHcCceeeEec--ccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHH
Q 016178 200 EASRLLESEGIQTHLTF--VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277 (394)
Q Consensus 200 ~A~~~L~~eGI~vN~Tl--VFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~ 277 (394)
+.++++.+.|+++.+-+ ....+.+..+.++|+.++...-.-.+.-|.. ..+ ....+.++.+
T Consensus 122 ~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~---------------~~~--~~~~i~~~ik 184 (368)
T PRK08649 122 ERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVS---------------KEG--EPLNLKEFIY 184 (368)
T ss_pred HHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccC---------------CcC--CHHHHHHHHH
Confidence 33455555443332211 3456777788899999999876555543210 001 1223344455
Q ss_pred HcCCchHHHHhhcCChhhhHh--hhCCCeecc
Q 016178 278 KYGHKSKLMAAAVRNKQDLFS--LLGVDYIIA 307 (394)
Q Consensus 278 ~~g~~t~vLaAS~R~~~~i~~--laG~D~lTi 307 (394)
+. +..|++..+.+.+.+.+ .+|||.+.+
T Consensus 185 ~~--~ipVIaG~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 185 EL--DVPVIVGGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred HC--CCCEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 54 35566655666555554 489988743
No 229
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=27.03 E-value=2.1e+02 Score=24.06 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHh-hcCCCCCCcEEEEe
Q 016178 163 DTHGIIRKVHDLLKLY-SEIDVPPERLLFKI 192 (394)
Q Consensus 163 D~e~~I~eA~~l~~l~-~~~gi~~~nvlIKI 192 (394)
+.+.--+-+.+|.++. +++||+++|++|+.
T Consensus 68 ~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~f 98 (114)
T PF01187_consen 68 DPEQNKKYSAAITEFLEEELGIPPDRIYINF 98 (114)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT--GGGEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCcCceEEEE
Confidence 7787788888898877 67899999999984
No 230
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=27.01 E-value=7.6e+02 Score=25.96 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=75.9
Q ss_pred EEEEecCCc------cCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh----hHHHHHHHHHHc------CceeeEe
Q 016178 152 VSTEVDARL------AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW----QGIEASRLLESE------GIQTHLT 215 (394)
Q Consensus 152 VS~EVdp~l------a~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~----eGi~A~~~L~~e------GI~vN~T 215 (394)
+.+-||.+- ++|.+.+++-.+++.+.+..+ +++|-=|... +.++.+++|.+. ++++.+.
T Consensus 229 ~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~-----~~~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aD 303 (408)
T TIGR01502 229 PIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPF-----HLRIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVAD 303 (408)
T ss_pred CeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccC-----CeEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEec
Confidence 466777763 778888888777776543211 4678878755 347777777765 6666665
Q ss_pred c-ccCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 216 F-VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 216 l-VFS~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
- ++++.++....++| +.++.+=++|+ -|+..++++..+.+.+|...
T Consensus 304 Es~~t~~d~~~~i~~~a~d~v~iK~~k~----------------------GGIt~a~kia~lA~~~Gi~~ 351 (408)
T TIGR01502 304 EWCNTVEDVKFFTDAKAGHMVQIKTPDV----------------------GGVNNIARAIMYCKANGMGA 351 (408)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEeCcccc----------------------CCHHHHHHHHHHHHHcCCEE
Confidence 4 57899999999887 57888877765 28999999999999887544
No 231
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.01 E-value=44 Score=33.52 Aligned_cols=95 Identities=22% Similarity=0.238 Sum_probs=58.2
Q ss_pred CcEEEEecCCh-hH--HHHHHHHHHc---CceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhc
Q 016178 186 ERLLFKIPSTW-QG--IEASRLLESE---GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259 (394)
Q Consensus 186 ~nvlIKIPaT~-eG--i~A~~~L~~e---GI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~ 259 (394)
+-||||=---+ .| .+|++.+.+. ..++-+- +=|++|+..|+++|+++|-. |.
T Consensus 168 D~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVE-v~tleea~~a~~agaDiImL------Dn--------------- 225 (290)
T PRK06559 168 DAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVE-VESLAAAEEAAAAGADIIML------DN--------------- 225 (290)
T ss_pred ceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEE-CCCHHHHHHHHHcCCCEEEE------CC---------------
Confidence 45888821111 12 3555555554 2334333 37999999999999988731 21
Q ss_pred cCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccH
Q 016178 260 RGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (394)
Q Consensus 260 ~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~ 309 (394)
--...++++.++++. +..+-++..-|.+++.+ ..|+|+|....
T Consensus 226 ----mspe~l~~av~~~~~---~~~leaSGGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 226 ----MSLEQIEQAITLIAG---RSRIECSGNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred ----CCHHHHHHHHHHhcC---ceEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 124456666665543 44455566778888876 79999986553
No 232
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=26.92 E-value=2.4e+02 Score=26.95 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCH
Q 016178 166 GIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSF 220 (394)
Q Consensus 166 ~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~ 220 (394)
+...-++.+.++..+ |++...+.|=+....++..-.+.|.+.||++++.--.++
T Consensus 59 e~~~i~~~I~~l~~~-~~~~~diAVL~R~~~~~~~i~~~L~~~gIp~~~~~~~~~ 112 (351)
T PF13361_consen 59 EAEYIAEEIKELIRN-GIPPSDIAVLVRTNSQIKEIEDALKEAGIPYRISGSKSL 112 (351)
T ss_dssp HHHHHHHHHHHHHHT-TS-GGGEEEEESSGGHHHHHHHHHHHTTS-EEESSSSBG
T ss_pred HHHHHHHHHHHHhhc-CCCcccEEEEEECchhHHHHHHHHhhhcceeEeccccch
Confidence 333345566666655 898899999999988999999999999999987655433
No 233
>PRK09776 putative diguanylate cyclase; Provisional
Probab=26.55 E-value=8e+02 Score=28.07 Aligned_cols=137 Identities=16% Similarity=0.075 Sum_probs=81.7
Q ss_pred CCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh------hHHHHHHHHHHcCceeeEecc---c
Q 016178 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW------QGIEASRLLESEGIQTHLTFV---Y 218 (394)
Q Consensus 148 v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~------eGi~A~~~L~~eGI~vN~TlV---F 218 (394)
...++++-++|..-.|.. .++. +.+..++.+++++++++-|.-+- .-.+.++.|.+.|+++-+-=. |
T Consensus 924 ~~~~~~iNis~~~l~~~~-~~~~---~~~~l~~~~~~~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G~~~~lddfg~g~ 999 (1092)
T PRK09776 924 KGLSIALPLSVAGLSSPT-LLPF---LLEQLENSPLPPRLLHLEITETALLNHAESASRLVQKLRLAGCRVVLSDFGRGL 999 (1092)
T ss_pred CCcEEEEEcCHHHhCCch-HHHH---HHHHHHhcCCCHHHeEEEEecHHhhcCHHHHHHHHHHHHHCCcEEEEcCCCCCc
Confidence 345799999886443332 3333 44445567888999999999875 346778999999999966421 1
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh
Q 016178 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (394)
Q Consensus 219 S~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~ 298 (394)
|--.. -.+..+++|=.=-+-+.+.. . ....-..++.+.++.+..| .++++-.+-+.+|...
T Consensus 1000 ~~~~~--l~~~~~d~iKid~~~~~~~~--------------~-~~~~~~~~~~i~~~~~~~~--~~~iaegVEt~~~~~~ 1060 (1092)
T PRK09776 1000 SSFNY--LKAFMADYLKLDGELVANLH--------------G-NLMDEMLISIIQGHAQRLG--MKTIAGPVELPLVLDT 1060 (1092)
T ss_pred hHHHH--HHhCCCCEEEECHHHHHhHh--------------c-ChhhHHHHHHHHHHHHHcC--CcEEecccCCHHHHHH
Confidence 11111 11123333332222222211 0 1123455677777777655 6678888888877755
Q ss_pred --hhCCCeecc
Q 016178 299 --LLGVDYIIA 307 (394)
Q Consensus 299 --laG~D~lTi 307 (394)
.+|||++-.
T Consensus 1061 l~~~g~~~~QG 1071 (1092)
T PRK09776 1061 LSGIGVDLAYG 1071 (1092)
T ss_pred HHHcCCCEEec
Confidence 799998643
No 234
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=26.31 E-value=5.4e+02 Score=23.99 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=73.3
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEec-
Q 016178 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF- 216 (394)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl- 216 (394)
+..+.+.+.+...+-+-+|++-+.|.+..++-++++.. .++ .+|-=|.-.+.+...+.|.+. +|++-+--
T Consensus 82 ~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~----~~i----~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs 153 (229)
T cd00308 82 ERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEK----YGL----AWIEEPCAPDDLEGYAALRRRTGIPIAADES 153 (229)
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhh----cCC----CeEECCCCccCHHHHHHHHhhCCCCEEeCCC
Confidence 33445555665567788888878887554444444433 222 466667766666667777666 67776654
Q ss_pred ccCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 217 VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 217 VFS~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
+++..+.....+.+ +.++.+=++++ -|+..++++.++.+.+|.+.
T Consensus 154 ~~~~~~~~~~~~~~~~d~~~~k~~~~----------------------GGi~~~~~i~~~a~~~gi~~ 199 (229)
T cd00308 154 VTTVDDALEALELGAVDILQIKPTRV----------------------GGLTESRRAADLAEAFGIRV 199 (229)
T ss_pred CCCHHHHHHHHHcCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCEE
Confidence 56777776666654 56665544443 27888899999888887544
No 235
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=26.21 E-value=2.2e+02 Score=29.43 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=56.1
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEE------EEecCC-------------------h
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLL------FKIPST-------------------W 196 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvl------IKIPaT-------------------~ 196 (394)
+.|+.+.+.+.-+=|-|.-.+|.+..++-|++|.++.+++ +++++ +-=|=| .
T Consensus 39 ~~Il~g~d~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~---~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~ 115 (344)
T TIGR00034 39 ADIIAGKDDRLLVVIGPCSIHDPEAAIEYATRLKALREEL---KDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRIN 115 (344)
T ss_pred HHHhcCCCCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhh---hcceEEEEEeccccCCCccccccccCCCCcCCCCCHH
Confidence 4778888889999999999999999999999999987642 11221 112433 3
Q ss_pred hHHHHHHHH----HHcCceeeEecccCHH
Q 016178 197 QGIEASRLL----ESEGIQTHLTFVYSFA 221 (394)
Q Consensus 197 eGi~A~~~L----~~eGI~vN~TlVFS~~ 221 (394)
+||+.+++| .+.|+++ +|-+..+.
T Consensus 116 ~GL~~~R~ll~~i~~~GlPv-atE~ld~~ 143 (344)
T TIGR00034 116 HGLRIARKLLLDLVNLGLPI-AGEFLDMI 143 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCe-EEEecCcC
Confidence 899999999 4669988 55555543
No 236
>PRK12999 pyruvate carboxylase; Reviewed
Probab=26.12 E-value=3.4e+02 Score=32.38 Aligned_cols=88 Identities=23% Similarity=0.224 Sum_probs=59.4
Q ss_pred CCCeEEEE---ecCCc-cCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC---Ch-hHHHHHHHHHHc-----CceeeE
Q 016178 148 VPGRVSTE---VDARL-AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLESE-----GIQTHL 214 (394)
Q Consensus 148 v~G~VS~E---Vdp~l-a~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa---T~-eGi~A~~~L~~e-----GI~vN~ 214 (394)
..+.|+.+ .||.- .+|.+-.++-|+++.++ |+ +.|+||=.+ |+ +--+-++.|.++ ++||+-
T Consensus 670 ~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~----Ga--~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hn 743 (1146)
T PRK12999 670 AEAAICYTGDILDPARAKYDLDYYVDLAKELEKA----GA--HILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHD 743 (1146)
T ss_pred EEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc----CC--CEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 35677877 34422 26888888888888775 34 678887433 22 223333444432 678888
Q ss_pred ecccCHHHHHHHHHcCCcEEEechhhh
Q 016178 215 TFVYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 215 TlVFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
|+=....-+++|++||+.+|..=++=+
T Consensus 744 t~Gla~an~laA~~aGad~vD~av~gl 770 (1146)
T PRK12999 744 TSGNGLATYLAAAEAGVDIVDVAVASM 770 (1146)
T ss_pred CCchHHHHHHHHHHhCCCEEEecchhh
Confidence 999999999999999998877666544
No 237
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=25.69 E-value=2.5e+02 Score=29.11 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=70.0
Q ss_pred CChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHH
Q 016178 194 STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAY 273 (394)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy 273 (394)
.||+=|+-++..- +.++-+--|.+.+.|..|.++|++.|-+= .|.+. . ++ +..+.+..+.++.
T Consensus 223 ~~w~~i~~ir~~~--~~pviiKgV~~~eda~~a~~~G~d~I~VS---------nhGGr-q----ld-~~~~~~~~L~ei~ 285 (361)
T cd04736 223 FNWQDLRWLRDLW--PHKLLVKGIVTAEDAKRCIELGADGVILS---------NHGGR-Q----LD-DAIAPIEALAEIV 285 (361)
T ss_pred CCHHHHHHHHHhC--CCCEEEecCCCHHHHHHHHHCCcCEEEEC---------CCCcC-C----Cc-CCccHHHHHHHHH
Confidence 4787666665543 45666667899999999999998866442 11221 0 10 0123566666665
Q ss_pred HHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHHHHHHhCCC
Q 016178 274 NYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (394)
Q Consensus 274 ~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl~~L~~~~~ 320 (394)
+.+ + -..++-..+|+-.+++. .+|+|.+.+.-.+|..+...+.
T Consensus 286 ~~~---~-~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~ 330 (361)
T cd04736 286 AAT---Y-KPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGE 330 (361)
T ss_pred HHh---C-CeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCH
Confidence 433 3 22344568899999997 6999999999999988865544
No 238
>PRK09875 putative hydrolase; Provisional
Probab=25.60 E-value=6.8e+02 Score=24.96 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=65.3
Q ss_pred hhhhhHHHHHHHHhcCCC------CeE-EEEecC-CccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHH
Q 016178 132 FFNKALVNVGGDLAKMVP------GRV-STEVDA-RLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASR 203 (394)
Q Consensus 132 ~~~~~~v~~g~eil~~v~------G~V-S~EVdp-~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~ 203 (394)
..+.....+.++|.++++ |-| -+=++. .+....+..++.|-+.... -|. =|.+=.|...+|.+.++
T Consensus 97 ~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~---TG~---pi~~Ht~~~~~g~e~l~ 170 (292)
T PRK09875 97 SVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQ---TGR---PISTHTSFSTMGLEQLA 170 (292)
T ss_pred CHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHH---HCC---cEEEcCCCccchHHHHH
Confidence 344555556667777765 443 222232 2444455566555555333 233 46777777669999999
Q ss_pred HHHHcCc---eeeEecc---cCHHHHHHHHHcCCcEEEechhh
Q 016178 204 LLESEGI---QTHLTFV---YSFAQAAAAAQAGASVIQIFVGR 240 (394)
Q Consensus 204 ~L~~eGI---~vN~TlV---FS~~QA~aaa~AGa~~ISpFVgR 240 (394)
.|.++|+ +|-++-+ +.+.+....++.|+.+-==.+|+
T Consensus 171 il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~ 213 (292)
T PRK09875 171 LLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGK 213 (292)
T ss_pred HHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCC
Confidence 9999999 6666655 89999999999997543224444
No 239
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=25.52 E-value=3.7e+02 Score=29.05 Aligned_cols=126 Identities=14% Similarity=0.147 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEecCCh--hHHHHHHHHHHc--CceeeEecccCHHHHHHHHHcCCcEEEech--hhh
Q 016178 168 IRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFV--GRL 241 (394)
Q Consensus 168 I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aaa~AGa~~ISpFV--gRi 241 (394)
.+.++.|++.. + +-|.|=.+--. .=+..++++.+. +..+-+--|-+.++|..|.++|+..|-.=+ |.+
T Consensus 250 ~~r~~~l~~ag----~--d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~ 323 (505)
T PLN02274 250 KERLEHLVKAG----V--DVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSI 323 (505)
T ss_pred HHHHHHHHHcC----C--CEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCcc
Confidence 46777787752 3 55777665311 224677888876 677767778999999999999999885532 222
Q ss_pred hhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHH-HhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 242 RDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 242 dd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vL-aAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
...- .. -..| .+-...+..+.++.++.+ ..|+ .-.+++..++.. .+|+|.+.+.-.+.
T Consensus 324 ~~t~---~~-------~~~g-~~~~~~i~~~~~~~~~~~--vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~ 384 (505)
T PLN02274 324 CTTQ---EV-------CAVG-RGQATAVYKVASIAAQHG--VPVIADGGISNSGHIVKALTLGASTVMMGSFLA 384 (505)
T ss_pred ccCc---cc-------cccC-CCcccHHHHHHHHHHhcC--CeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhc
Confidence 2110 00 0001 112223344444444443 4445 556888999987 59999988776553
No 240
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.45 E-value=7.3e+02 Score=25.51 Aligned_cols=129 Identities=14% Similarity=0.095 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEE--------ecC-------ChhHHHHHHHHHHcCceeeEecccCHHHHHHH
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFK--------IPS-------TWQGIEASRLLESEGIQTHLTFVYSFAQAAAA 226 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIK--------IPa-------T~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aa 226 (394)
-|..+.++.|+++..+++..|+ .++|- +.+ .---+..++.+...+. +--.-+.|.+++..|
T Consensus 181 ~~~~~~~~~a~~L~~l~~~~~~---~lIIND~vdlAl~~~aDGVHLgq~dl~~~~aR~llg~~~-iIG~S~Hs~~e~~~A 256 (347)
T PRK02615 181 ADDRQRLEEAKKLKELCHRYGA---LFIVNDRVDIALAVDADGVHLGQEDLPLAVARQLLGPEK-IIGRSTTNPEEMAKA 256 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHhCC---eEEEeChHHHHHHcCCCEEEeChhhcCHHHHHHhcCCCC-EEEEecCCHHHHHHH
Confidence 4566788889999998876654 23321 111 1111344454432222 223444689999999
Q ss_pred HHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCe
Q 016178 227 AQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDY 304 (394)
Q Consensus 227 a~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~ 304 (394)
.+.|++||. +|-+-....+ .+ ..-.|+..++.+.+.+ +..+++-..-+.+++-+ .+|+|-
T Consensus 257 ~~~GaDYI~--lGPvf~T~tK-p~----------~~~~Gle~l~~~~~~~-----~iPv~AiGGI~~~ni~~l~~~Ga~g 318 (347)
T PRK02615 257 IAEGADYIG--VGPVFPTPTK-PG----------KAPAGLEYLKYAAKEA-----PIPWFAIGGIDKSNIPEVLQAGAKR 318 (347)
T ss_pred HHcCCCEEE--ECCCcCCCCC-CC----------CCCCCHHHHHHHHHhC-----CCCEEEECCCCHHHHHHHHHcCCcE
Confidence 999999963 4444322111 00 0124676666654422 34566666667777765 478888
Q ss_pred ecccHHHH
Q 016178 305 IIAPLKVL 312 (394)
Q Consensus 305 lTip~~vl 312 (394)
+.+--.+.
T Consensus 319 VAvisaI~ 326 (347)
T PRK02615 319 VAVVRAIM 326 (347)
T ss_pred EEEeHHHh
Confidence 87766664
No 241
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.43 E-value=2.2e+02 Score=26.76 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHcCceeeEec--ccC--------HHHHHHHHHcCCcEEE
Q 016178 196 WQGIEASRLLESEGIQTHLTF--VYS--------FAQAAAAAQAGASVIQ 235 (394)
Q Consensus 196 ~eGi~A~~~L~~eGI~vN~Tl--VFS--------~~QA~aaa~AGa~~IS 235 (394)
...+++++.+.+.|+.+.+.+ +|. .+.+..+.++|+..|.
T Consensus 115 ~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~ 164 (265)
T cd03174 115 ENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS 164 (265)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 355788888999998877776 565 5566677788987766
No 242
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=25.13 E-value=6.1e+02 Score=26.37 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEE-----------EecCChhHHHHHHHHH
Q 016178 138 VNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLF-----------KIPSTWQGIEASRLLE 206 (394)
Q Consensus 138 v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlI-----------KIPaT~eGi~A~~~L~ 206 (394)
-++...+......+||+-+ |+..|-+++++.|+.+-... + .-+.| +=|+-|+-|+++++.-
T Consensus 130 ~e~V~~v~~~l~~pVs~KI--RI~~d~~kTvd~ak~~e~aG----~--~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~ 201 (358)
T KOG2335|consen 130 GEMVSAVRANLNVPVSVKI--RIFVDLEKTVDYAKMLEDAG----V--SLLTVHGRTREQKGLKTGPADWEAIKAVRENV 201 (358)
T ss_pred HHHHHHHHhhcCCCeEEEE--EecCcHHHHHHHHHHHHhCC----C--cEEEEecccHHhcCCCCCCcCHHHHHHHHHhC
Confidence 3344455556667788777 78899999999999765532 2 11222 5688999999999887
Q ss_pred HcCceeeEe-cccCHHHHHHHHH-cCC
Q 016178 207 SEGIQTHLT-FVYSFAQAAAAAQ-AGA 231 (394)
Q Consensus 207 ~eGI~vN~T-lVFS~~QA~aaa~-AGa 231 (394)
.. |++-+- =|.|++.+..|.+ -|+
T Consensus 202 ~~-ipviaNGnI~~~~d~~~~~~~tG~ 227 (358)
T KOG2335|consen 202 PD-IPVIANGNILSLEDVERCLKYTGA 227 (358)
T ss_pred cC-CcEEeeCCcCcHHHHHHHHHHhCC
Confidence 76 776554 3889999999998 453
No 243
>PRK00208 thiG thiazole synthase; Reviewed
Probab=25.04 E-value=5.5e+02 Score=25.39 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHcCceeeEe-cccCHHHHHHHHHcCCcEE
Q 016178 195 TWQGIEASRLLESEGIQTHLT-FVYSFAQAAAAAQAGASVI 234 (394)
Q Consensus 195 T~eGi~A~~~L~~eGI~vN~T-lVFS~~QA~aaa~AGa~~I 234 (394)
+++-++.+++- .+++|.+- -|-+++|+..|.+.|+.-+
T Consensus 163 ~~~~i~~i~e~--~~vpVIveaGI~tpeda~~AmelGAdgV 201 (250)
T PRK00208 163 NPYNLRIIIEQ--ADVPVIVDAGIGTPSDAAQAMELGADAV 201 (250)
T ss_pred CHHHHHHHHHh--cCCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 45555555553 36666554 4778999999999997644
No 244
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=24.66 E-value=5.1e+02 Score=25.59 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHHcCceeeEec-ccCHHHHHHHHHcCCcEE
Q 016178 195 TWQGIEASRLLESEGIQTHLTF-VYSFAQAAAAAQAGASVI 234 (394)
Q Consensus 195 T~eGi~A~~~L~~eGI~vN~Tl-VFS~~QA~aaa~AGa~~I 234 (394)
+++-|+.+++- .+++|.+-. |-+++|+..|.+.|+.-+
T Consensus 163 ~~~~I~~I~e~--~~vpVI~egGI~tpeda~~AmelGAdgV 201 (248)
T cd04728 163 NPYNLRIIIER--ADVPVIVDAGIGTPSDAAQAMELGADAV 201 (248)
T ss_pred CHHHHHHHHHh--CCCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 44555544432 378888776 899999999999997644
No 245
>PLN02826 dihydroorotate dehydrogenase
Probab=24.54 E-value=3.1e+02 Score=28.77 Aligned_cols=45 Identities=24% Similarity=0.117 Sum_probs=35.7
Q ss_pred HHHHHHHHHHc---Ccee-eEecccCHHHHHHHHHcCCcEEEechhhhh
Q 016178 198 GIEASRLLESE---GIQT-HLTFVYSFAQAAAAAQAGASVIQIFVGRLR 242 (394)
Q Consensus 198 Gi~A~~~L~~e---GI~v-N~TlVFS~~QA~aaa~AGa~~ISpFVgRid 242 (394)
.++.++++.+. .|.+ =+.-|+|-+.|+....|||+.|..|-+-+.
T Consensus 327 sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 327 STEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 47777887664 2443 467899999999999999999999887664
No 246
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=24.54 E-value=3.1e+02 Score=28.75 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=82.3
Q ss_pred hcccChhhhhhhhhhhhHHHHHHHHh-cCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--
Q 016178 120 CELENSELRLSCFFNKALVNVGGDLA-KMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-- 196 (394)
Q Consensus 120 ~~l~~~~~~~~~~~~~~~v~~g~eil-~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~-- 196 (394)
.|.++|.......+.+.+..+-+..- ...+-.+++|+||+- .+.+ -...|++.||+ ||=+=|=+-.
T Consensus 93 ~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~-~~~e--------~~~~l~~~GvN--RiSlGVQsf~~~ 161 (416)
T COG0635 93 FGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGT-VEAE--------KFKALKEAGVN--RISLGVQSFNDE 161 (416)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCC-CCHH--------HHHHHHHcCCC--EEEeccccCCHH
Confidence 34456655555445555543332221 122378999999973 3332 23446777885 6666555432
Q ss_pred ------------hHHHHHHHHHHcCc-eeeEecccCHH-HH--------HHHHHcCCcEEEechhhhhhhhhcCCCCccc
Q 016178 197 ------------QGIEASRLLESEGI-QTHLTFVYSFA-QA--------AAAAQAGASVIQIFVGRLRDWARNHSGDPEI 254 (394)
Q Consensus 197 ------------eGi~A~~~L~~eGI-~vN~TlVFS~~-QA--------~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~ 254 (394)
+-..|++.+.+.|+ ++|+-|||.+. |. ..+.+.|+.=||+|==-+..|.+.......
T Consensus 162 ~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~- 240 (416)
T COG0635 162 VLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIK- 240 (416)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhccc-
Confidence 34677788888876 79999999742 22 235567888888885555544322111000
Q ss_pred chhhccCCCchHHHHHHHHHHHHHcCCc
Q 016178 255 DDALKRGEDPALSLVSKAYNYIHKYGHK 282 (394)
Q Consensus 255 ~~~~~~~~d~Gv~~v~~iy~~~~~~g~~ 282 (394)
...+ ...+.-...-..+.+.+.++||+
T Consensus 241 ~~~l-P~~d~~~~~~~~~~e~L~~~Gy~ 267 (416)
T COG0635 241 GKAL-PDEDEKADMYELVEELLEKAGYR 267 (416)
T ss_pred CCCC-cChHHHHHHHHHHHHHHHHCCCc
Confidence 0001 11122345555666677777773
No 247
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=24.45 E-value=90 Score=29.50 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=25.5
Q ss_pred cCCCCeEEEEecCCccCCHHHHHHHHHHHHH--HhhcCCCCCCcEEEEecCChhHHHHHHHHHHc
Q 016178 146 KMVPGRVSTEVDARLAYDTHGIIRKVHDLLK--LYSEIDVPPERLLFKIPSTWQGIEASRLLESE 208 (394)
Q Consensus 146 ~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~--l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e 208 (394)
+..+++|- -|-+++|.+++|+.||++-. +...-. +.--++.|=|.|+.-++-+++++++
T Consensus 134 ~~~~~pIl---RPLig~dK~EIi~~Ar~Igtye~S~~~~-~~C~~~~k~p~t~~~~~~~~~~e~~ 194 (197)
T PF02568_consen 134 SASDLPIL---RPLIGFDKEEIIEIARKIGTYEISIRPY-DCCSLFPKHPVTKAKLEEVEKEEEK 194 (197)
T ss_dssp GG--S-EE----TTTT--HHHHHHHHHHTT-HHHHTS------------------HHHHHHHHTT
T ss_pred cccCCcee---CCcCCCCHHHHHHHHHHhCchhhhcCCC-CcceeeCCCCCcCCCHHHHHHHHHH
Confidence 33455553 56689999999999999843 221111 3345666999999999999888763
No 248
>PRK14847 hypothetical protein; Provisional
Probab=24.44 E-value=6.4e+02 Score=25.89 Aligned_cols=149 Identities=16% Similarity=0.048 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhcCCCCe-EEEEecCCccCCHHHHHHHHHHHHHHh-hcCCCCCCc-EEEEecCCh------hHHHHHHHH
Q 016178 135 KALVNVGGDLAKMVPGR-VSTEVDARLAYDTHGIIRKVHDLLKLY-SEIDVPPER-LLFKIPSTW------QGIEASRLL 205 (394)
Q Consensus 135 ~~~v~~g~eil~~v~G~-VS~EVdp~la~D~e~~I~eA~~l~~l~-~~~gi~~~n-vlIKIPaT~------eGi~A~~~L 205 (394)
...+.++++......|- +.+++.|.=+..++ ++-..++.+.. +..|.++.+ ..|-+|-|- +=...++.|
T Consensus 154 ~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad--~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l 231 (333)
T PRK14847 154 LAGTRQIRALADANPGTQWIYEYSPETFSLAE--LDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWM 231 (333)
T ss_pred HHHHHHHHHhccccCCCceEEEEeeecCCCCC--HHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHH
Q ss_pred ---------HHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHH
Q 016178 206 ---------ESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (394)
Q Consensus 206 ---------~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (394)
..-|++|+=++=+..+-+++|.++||.++.--+.-+ |+..|-....++...+
T Consensus 232 ~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~G~-------------------GERaGNa~lE~v~~~L 292 (333)
T PRK14847 232 HRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGN-------------------GERTGNVDLVALALNL 292 (333)
T ss_pred HHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCCcC-------------------CccccchhHHHHHHHH
Q ss_pred HHcCCchHHHHhhcCChhhhHh-hhCCCe
Q 016178 277 HKYGHKSKLMAAAVRNKQDLFS-LLGVDY 304 (394)
Q Consensus 277 ~~~g~~t~vLaAS~R~~~~i~~-laG~D~ 304 (394)
+..|+++.+=-..+..+.+..+ ..|..+
T Consensus 293 ~~~g~~~~id~~~l~~~~~~v~~~sg~~v 321 (333)
T PRK14847 293 ERQGIASGLDFRDMAALRACVSECNQLPI 321 (333)
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHHhCCCC
No 249
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=24.35 E-value=6e+02 Score=28.03 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=38.7
Q ss_pred HHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHcCceeeEecccCH----------HHHHHHHHcCCcEEE
Q 016178 175 LKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSF----------AQAAAAAQAGASVIQ 235 (394)
Q Consensus 175 ~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~----------~QA~aaa~AGa~~IS 235 (394)
++...+.|++.=|++.-+--...-.++++...+.|..+.+++.|+. +-+..+.++|+..|+
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~ 172 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSIC 172 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3344455776545554443334567778888888999998887755 224445577887664
No 250
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=24.32 E-value=2.6e+02 Score=28.96 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=73.6
Q ss_pred cCCCCcccChhHHHHHhcCChHHHHHHHHHHHHhhhhhcccChhhhhhhhhhhhHHHHHHHHhcC-CCCeEEEEecC-Cc
Q 016178 83 FPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKM-VPGRVSTEVDA-RL 160 (394)
Q Consensus 83 ~~p~daTTNpsli~~~~~nP~ti~~~ai~~al~~~~~~~l~~~~~~~~~~~~~~~v~~g~eil~~-v~G~VS~EVdp-~l 160 (394)
|+|.+.--||+=+++.++-++ -+++++.+.. -+.++.+-+...+.+. -+| |-+.... -=
T Consensus 157 ~~PDGpfeNp~dLm~~~Ki~e--A~e~~E~aa~----------------h~t~Dmv~v~~km~~sgaDG-vNFDttgaaG 217 (466)
T PF09505_consen 157 YTPDGPFENPGDLMKMFKIKE--AQESMEHAAE----------------HLTRDMVWVMQKMYESGADG-VNFDTTGAAG 217 (466)
T ss_pred eCCCCCCCCHHHHHHHhhHHH--HHHHHHHHHH----------------HhhhhHHHHHHHHHhccCCc-ccccccccCC
Confidence 466666666666666665443 3333333211 1224555555444433 355 3333211 11
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHH-HHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechh
Q 016178 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEAS-RLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVG 239 (394)
Q Consensus 161 a~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~-~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVg 239 (394)
-.|.-+++.....|.+-| |++.|..-..-|-+--+ -+|+-.|. -+.-+|--+|+-.+.+||+.+--|-|+
T Consensus 218 d~Df~atL~AvE~Lr~~f-------P~m~IE~GMAgE~vLGMHG~leYdg~--~LAGL~PHqQa~l~~kAGanvFGPVvN 288 (466)
T PF09505_consen 218 DGDFYATLKAVEALRKKF-------PNMYIEMGMAGEFVLGMHGELEYDGV--TLAGLWPHQQAPLAEKAGANVFGPVVN 288 (466)
T ss_pred ChhHHHHHHHHHHHHHhC-------cceeEecccccceeeecccceeECCE--eeeccCcccccchHHhcCcceecceec
Confidence 124557777777777776 67777655443322222 34555553 345689999999999999999888876
Q ss_pred h
Q 016178 240 R 240 (394)
Q Consensus 240 R 240 (394)
-
T Consensus 289 t 289 (466)
T PF09505_consen 289 T 289 (466)
T ss_pred C
Confidence 4
No 251
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=23.93 E-value=4.1e+02 Score=25.82 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.5
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCC
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDV 183 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi 183 (394)
|-++-+..||. ..+.+..++-|+.+.++.+++|+
T Consensus 100 PD~~vfDLDP~-~~~f~~v~~~A~~~r~~L~~~gL 133 (228)
T cd04864 100 PDLMVFDLDPS-ADDIEAVRTAALAVRELLDELGL 133 (228)
T ss_pred CCEEEEecCCC-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 56899999998 77899999999999999998877
No 252
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=23.87 E-value=2.9e+02 Score=26.57 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChh---------HHHHHHHHHHcCceeeE-----ecccCHHHHHHHH
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ---------GIEASRLLESEGIQTHL-----TFVYSFAQAAAAA 227 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~e---------Gi~A~~~L~~eGI~vN~-----TlVFS~~QA~aaa 227 (394)
.-|++||+.+-++.. -.+.-|+||+|-..+ |.+-++.+.+.|..+.+ |+++..+..++.|
T Consensus 132 EGTD~~i~R~~~l~~------~~~~~VlvK~~Kp~QD~R~DlPtIG~~Tv~~~~~ag~~~laveAg~tl~ld~~~~i~~A 205 (214)
T PF06230_consen 132 EGTDAMIRRAGELRG------KGKGGVLVKVPKPGQDLRFDLPTIGPDTVENAAEAGLAGLAVEAGKTLILDREEVIALA 205 (214)
T ss_pred ccHHHHHHHHHHhcC------CCCCEEEEEccCCCCcccccccccCHHHHHHHHHcCCeEEEEecCcEEEecHHHHHHHH
Confidence 569999999877766 124679999998764 77788999888877754 8999998888877
Q ss_pred Hc-CCcE
Q 016178 228 QA-GASV 233 (394)
Q Consensus 228 ~A-Ga~~ 233 (394)
++ |-++
T Consensus 206 d~~gi~i 212 (214)
T PF06230_consen 206 DKAGIFI 212 (214)
T ss_pred HHcCCEE
Confidence 54 5443
No 253
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.75 E-value=5.2e+02 Score=25.82 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCC--CCeEEEEecCC----ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEE---------EecCCh-hHHH
Q 016178 137 LVNVGGDLAKMV--PGRVSTEVDAR----LAYDTHGIIRKVHDLLKLYSEIDVPPERLLF---------KIPSTW-QGIE 200 (394)
Q Consensus 137 ~v~~g~eil~~v--~G~VS~EVdp~----la~D~e~~I~eA~~l~~l~~~~gi~~~nvlI---------KIPaT~-eGi~ 200 (394)
..++.+.+.+.+ +-.|.+-+++. -..+. +++.++.+..++.|++ -|-| +.|... .-+.
T Consensus 207 ~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~----~e~~~ia~~Le~~gvd--~iev~~g~~~~~~~~~~~~~~~~~ 280 (336)
T cd02932 207 LLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL----EDSVELAKALKELGVD--LIDVSSGGNSPAQKIPVGPGYQVP 280 (336)
T ss_pred HHHHHHHHHHHcCCCceEEEEEcccccCCCCCCH----HHHHHHHHHHHHcCCC--EEEECCCCCCcccccCCCccccHH
Confidence 344445555555 33677776642 22334 4455555555555552 2221 012211 1234
Q ss_pred HHHHHHHc-CceeeEec-ccCHHHHHHHHHcC-CcEEE
Q 016178 201 ASRLLESE-GIQTHLTF-VYSFAQAAAAAQAG-ASVIQ 235 (394)
Q Consensus 201 A~~~L~~e-GI~vN~Tl-VFS~~QA~aaa~AG-a~~IS 235 (394)
.++.+.+. +|+|-++- +++++++..+.+.| +++|+
T Consensus 281 ~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 318 (336)
T cd02932 281 FAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVA 318 (336)
T ss_pred HHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeeh
Confidence 55555554 67776644 56899999999988 66654
No 254
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=23.75 E-value=4.3e+02 Score=25.66 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=31.8
Q ss_pred CCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCC
Q 016178 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDV 183 (394)
Q Consensus 148 v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi 183 (394)
.|.++-+..||.=.-+.+..++-|+.+.++.+++|+
T Consensus 92 ~PD~lvfDLDP~~~~~f~~v~~~A~~vr~~L~~lgL 127 (223)
T cd04866 92 KPSEIVFDLDPPSRDHFSLAVEAANLLKEILDALGL 127 (223)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 466888999997777899999999999999999877
No 255
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=23.75 E-value=5.8e+02 Score=25.37 Aligned_cols=109 Identities=14% Similarity=0.176 Sum_probs=65.0
Q ss_pred CccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHH-HHHHHHHHcCc---eee-EecccCHHH-HHHHHHc--C
Q 016178 159 RLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGI-EASRLLESEGI---QTH-LTFVYSFAQ-AAAAAQA--G 230 (394)
Q Consensus 159 ~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi-~A~~~L~~eGI---~vN-~TlVFS~~Q-A~aaa~A--G 230 (394)
...+++++-++=|+.|.++ || +.+=+=.|+..+.- ++++.+.+.|- .+. ..++=.... ...|.++ |
T Consensus 17 g~~~s~~~Ki~ia~~L~~~----Gv--~~IE~gfP~~~~~e~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~ 90 (284)
T cd07942 17 AEPMSVEQKLRFFKLLVKI----GF--KEIEVGFPSASQTDFDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRG 90 (284)
T ss_pred CCCCCHHHHHHHHHHHHHc----CC--CEEEEeCCCCCHHHHHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCC
Confidence 3456777666666666554 56 45555569877665 88999966643 222 245555455 5566666 5
Q ss_pred Cc--EEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCc
Q 016178 231 AS--VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (394)
Q Consensus 231 a~--~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~ 282 (394)
+. .|..|++==+-+..++.. ...+..+..++++.+|.+.+|.+
T Consensus 91 ~~~~~v~i~~~~Sd~h~~~~~~---------~s~~e~~~~~~~~v~~a~~~g~~ 135 (284)
T cd07942 91 AKKAIVHLYNATSPLQRRVVFG---------KSKEEIIEIAVDGAKLVKELAAK 135 (284)
T ss_pred CCCCEEEEEEcCCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhccc
Confidence 54 577776543333222221 11234678888888898887743
No 256
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=23.61 E-value=1.1e+02 Score=30.72 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCceeeEecc--cCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHH
Q 016178 197 QGIEASRLLESEGIQTHLTFV--YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYN 274 (394)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlV--FS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~ 274 (394)
+-|+.++.+...-+.+|+... +-.+|...+.+.|+.+|+...|.-..+. +
T Consensus 52 ~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~p~~~i----------------------------~ 103 (307)
T TIGR03151 52 KEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGNPGKYI----------------------------P 103 (307)
T ss_pred HHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCCcHHHH----------------------------H
Q ss_pred HHHHcCCchHHHHhhcCChhhhHhhhCCCeecc
Q 016178 275 YIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIA 307 (394)
Q Consensus 275 ~~~~~g~~t~vLaAS~R~~~~i~~laG~D~lTi 307 (394)
.++++|.+.-....+.+....+.+. |+|.+++
T Consensus 104 ~lk~~g~~v~~~v~s~~~a~~a~~~-GaD~Ivv 135 (307)
T TIGR03151 104 RLKENGVKVIPVVASVALAKRMEKA-GADAVIA 135 (307)
T ss_pred HHHHcCCEEEEEcCCHHHHHHHHHc-CCCEEEE
No 257
>PRK06267 hypothetical protein; Provisional
Probab=23.59 E-value=4e+02 Score=27.03 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHcCceeeEeccc----CHHHHHHHH----HcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHH
Q 016178 197 QGIEASRLLESEGIQTHLTFVY----SFAQAAAAA----QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSL 268 (394)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlVF----S~~QA~aaa----~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~ 268 (394)
+-+++++.+.+.||+++.+.++ +.++....+ +.++..+++++ + ....+. .+.....+...-
T Consensus 154 d~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~--L----~P~pGT-----p~~~~~~~s~~e 222 (350)
T PRK06267 154 KIKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYS--L----NPQKGT-----IFENKPSVTTLE 222 (350)
T ss_pred HHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEe--e----eECCCC-----cCCCCCCCCHHH
Confidence 5688888998999999999888 455554433 45766543332 1 011110 010011245566
Q ss_pred HHHHHHHHHHcCCchHHHHhhcCC----hhhhHhhhCCCeec
Q 016178 269 VSKAYNYIHKYGHKSKLMAAAVRN----KQDLFSLLGVDYII 306 (394)
Q Consensus 269 v~~iy~~~~~~g~~t~vLaAS~R~----~~~i~~laG~D~lT 306 (394)
+.++..++|-.-++..+++++.+. .+. .-.+||+.+|
T Consensus 223 ~lr~ia~~Rl~lP~~~I~~~~~~~~l~~~~~-~~~aGaN~i~ 263 (350)
T PRK06267 223 YMNWVSSVRLNFPKIKIITGTWVDKLTNIGP-LIMSGSNVIT 263 (350)
T ss_pred HHHHHHHHHHHCCCCCcchhhHhHhcchhhH-HhhcCcceee
Confidence 677777777766778886666532 222 3369999987
No 258
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.36 E-value=58 Score=32.80 Aligned_cols=93 Identities=20% Similarity=0.185 Sum_probs=56.4
Q ss_pred CcEEEE------ecCChhHHHHHHHHHHcCceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhc
Q 016178 186 ERLLFK------IPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259 (394)
Q Consensus 186 ~nvlIK------IPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~ 259 (394)
+-|||| ...-.+-++.++.+..+ .++ ---+-+++|+..|+++|+.+|-. |.
T Consensus 177 D~vLIkdNHi~~~G~i~~av~~~r~~~~~-~kI-eVEvetleea~eA~~aGaDiImL------Dn--------------- 233 (294)
T PRK06978 177 DGILIKENHIAAAGGVGAALDAAFALNAG-VPV-QIEVETLAQLETALAHGAQSVLL------DN--------------- 233 (294)
T ss_pred ceEEEeHHHHHHhCCHHHHHHHHHHhCCC-CcE-EEEcCCHHHHHHHHHcCCCEEEE------CC---------------
Confidence 568888 22222445555554332 222 22346899999999999988731 21
Q ss_pred cCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeeccc
Q 016178 260 RGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (394)
Q Consensus 260 ~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip 308 (394)
-....++++..+.+. +..+-++..-|.+++.+ ..|+|+|.+.
T Consensus 234 ----mspe~l~~av~~~~~---~~~lEaSGGIt~~ni~~yA~tGVD~IS~g 277 (294)
T PRK06978 234 ----FTLDMMREAVRVTAG---RAVLEVSGGVNFDTVRAFAETGVDRISIG 277 (294)
T ss_pred ----CCHHHHHHHHHhhcC---CeEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 124456666665542 34444555678888876 7899998654
No 259
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.98 E-value=4.3e+02 Score=25.82 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCchHH--H--HhhcCChhhhH------hhhCCCeeccc
Q 016178 266 LSLVSKAYNYIHKYGHKSKL--M--AAAVRNKQDLF------SLLGVDYIIAP 308 (394)
Q Consensus 266 v~~v~~iy~~~~~~g~~t~v--L--aAS~R~~~~i~------~laG~D~lTip 308 (394)
+..+.++.++.+++|.+..+ + .++--+.+.+. ..+|+|.+.++
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK 169 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 56677777888888876542 1 12222333333 25788887664
No 260
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=22.84 E-value=6.7e+02 Score=30.07 Aligned_cols=90 Identities=23% Similarity=0.192 Sum_probs=58.2
Q ss_pred cCCCCeEEEE---ecC-CccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC---Chh-HHHHHHHHHHc-----Ccee
Q 016178 146 KMVPGRVSTE---VDA-RLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TWQ-GIEASRLLESE-----GIQT 212 (394)
Q Consensus 146 ~~v~G~VS~E---Vdp-~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa---T~e-Gi~A~~~L~~e-----GI~v 212 (394)
..+.|.|+.. .|| +--+|.+-.++-|+++.++ |+ +.++||=.+ |+. --.-++.|.++ ++||
T Consensus 666 ~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~----Ga--d~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~ 739 (1143)
T TIGR01235 666 KVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKA----GA--HILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHT 739 (1143)
T ss_pred CEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc----CC--CEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3456778877 344 2246677777777777765 44 678887433 332 22333444332 6778
Q ss_pred eEecccCHHHHHHHHHcCCcEEEechhhh
Q 016178 213 HLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (394)
Q Consensus 213 N~TlVFS~~QA~aaa~AGa~~ISpFVgRi 241 (394)
+-|.=....-+++|++||+.+|--=++=+
T Consensus 740 Hdt~Gla~an~laA~eaGad~vD~ai~gl 768 (1143)
T TIGR01235 740 HDTSGIAVASMLAAVEAGVDVVDVAVDSM 768 (1143)
T ss_pred CCCCCcHHHHHHHHHHhCCCEEEecchhh
Confidence 88888889999999999998776655554
No 261
>PRK07534 methionine synthase I; Validated
Probab=22.83 E-value=8.1e+02 Score=24.87 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=55.2
Q ss_pred hhhhhhHHHHHHHHhcCC--CCeEEEEecCCcc-------CCHHHHHHHHHHHHHHhhcCCCCCCcEEEE-ecCChhHHH
Q 016178 131 CFFNKALVNVGGDLAKMV--PGRVSTEVDARLA-------YDTHGIIRKVHDLLKLYSEIDVPPERLLFK-IPSTWQGIE 200 (394)
Q Consensus 131 ~~~~~~~v~~g~eil~~v--~G~VS~EVdp~la-------~D~e~~I~eA~~l~~l~~~~gi~~~nvlIK-IPaT~eGi~ 200 (394)
..+.+..++++++..+.. +.+|.--+.|.-+ .+.++..+.-+..++.+.+-|+ +-+++- +|...|...
T Consensus 84 ~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~~~qi~~l~~~gv--D~l~~ET~p~l~E~~a 161 (336)
T PRK07534 84 HELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAFHEQAEGLKAGGA--DVLWVETISAPEEIRA 161 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHHHHHHHHHHhCCC--CEEEEeccCCHHHHHH
Confidence 345666777887776532 3456666766432 2445555555555666655565 567774 888888888
Q ss_pred HHHHHHHcCceeeEeccc
Q 016178 201 ASRLLESEGIQTHLTFVY 218 (394)
Q Consensus 201 A~~~L~~eGI~vN~TlVF 218 (394)
+++.++..|+++-+++.|
T Consensus 162 ~~~~~~~~~~Pv~vSft~ 179 (336)
T PRK07534 162 AAEAAKLAGMPWCGTMSF 179 (336)
T ss_pred HHHHHHHcCCeEEEEEEE
Confidence 888777778777665544
No 262
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=22.65 E-value=77 Score=32.09 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=28.0
Q ss_pred CChhHHHHHHHHHHcCceeeEecccCH----HHHHHHH
Q 016178 194 STWQGIEASRLLESEGIQTHLTFVYSF----AQAAAAA 227 (394)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlVFS~----~QA~aaa 227 (394)
.+|+.|+|+++|+++||++-+-=+||. +|++..+
T Consensus 203 mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~ 240 (312)
T COG3958 203 MVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKA 240 (312)
T ss_pred chHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHH
Confidence 478999999999999999999888886 4554433
No 263
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=22.60 E-value=6.1e+02 Score=23.31 Aligned_cols=90 Identities=18% Similarity=0.313 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEE---------EecCChhHHHHHHHHHH
Q 016178 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLF---------KIPSTWQGIEASRLLES 207 (394)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlI---------KIPaT~eGi~A~~~L~~ 207 (394)
..++.+++.+.++-+|++-+. .+.+.+ +++.++.+.+++.|+ +-+.| .-|..|+.+ +.+.+
T Consensus 111 ~~eii~~v~~~~~~~v~vk~r--~~~~~~---~~~~~~~~~l~~~Gv--d~i~v~~~~~~~~~~~~~~~~~~---~~i~~ 180 (231)
T cd02801 111 VAEIVRAVREAVPIPVTVKIR--LGWDDE---EETLELAKALEDAGA--SALTVHGRTREQRYSGPADWDYI---AEIKE 180 (231)
T ss_pred HHHHHHHHHHhcCCCEEEEEe--eccCCc---hHHHHHHHHHHHhCC--CEEEECCCCHHHcCCCCCCHHHH---HHHHh
Confidence 334444444444445666553 444433 344444444445555 22321 113444444 44444
Q ss_pred c-CceeeEec-ccCHHHHHHHHHc-CCcEEEe
Q 016178 208 E-GIQTHLTF-VYSFAQAAAAAQA-GASVIQI 236 (394)
Q Consensus 208 e-GI~vN~Tl-VFS~~QA~aaa~A-Ga~~ISp 236 (394)
. +|++-+.- |.+++++..+.+. |++.|..
T Consensus 181 ~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 181 AVSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 3 56666644 6799999999988 7776654
No 264
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.53 E-value=63 Score=32.31 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=59.4
Q ss_pred CcEEEEe---c---CChhH-HHHHHHHHHc-C--ceeeEecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccc
Q 016178 186 ERLLFKI---P---STWQG-IEASRLLESE-G--IQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEID 255 (394)
Q Consensus 186 ~nvlIKI---P---aT~eG-i~A~~~L~~e-G--I~vN~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~ 255 (394)
+-||||= - +.++| .+|++.+.+. + .++ .--+=|++|+..|+++|+++|-. |.
T Consensus 160 d~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kI-eVEv~slee~~ea~~~gaDiImL------Dn----------- 221 (281)
T PRK06543 160 DAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHV-EVEVDRLDQIEPVLAAGVDTIML------DN----------- 221 (281)
T ss_pred ceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcE-EEEeCCHHHHHHHHhcCCCEEEE------CC-----------
Confidence 5699982 2 12223 4566666654 2 232 23466999999999999988732 21
Q ss_pred hhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccH
Q 016178 256 DALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (394)
Q Consensus 256 ~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~ 309 (394)
--...++++..+++. +..+-++..-|.+++.+ ..|+|+|.+..
T Consensus 222 --------~s~e~l~~av~~~~~---~~~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 222 --------FSLDDLREGVELVDG---RAIVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred --------CCHHHHHHHHHHhCC---CeEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 124456666665553 23455556678888876 68999986543
No 265
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=22.44 E-value=1.9e+02 Score=31.41 Aligned_cols=86 Identities=13% Similarity=0.280 Sum_probs=55.5
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCceeeEec
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQTHLTF 216 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--------------eGi~A~~~L~~eGI~vN~Tl 216 (394)
-+++|++|+...+ +.++. | .++|+ .+|-+-|=+.. +-++|++.|.+.|+++|+.+
T Consensus 194 gitiEtRPD~i~~--e~L~~---L----~~~G~--~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~L 262 (522)
T TIGR01211 194 GLTIETRPDYCRE--EHIDR---M----LKLGA--TRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHI 262 (522)
T ss_pred EEEEEEcCCcCCH--HHHHH---H----HHcCC--CEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999975433 22222 2 33444 56766665544 34789999999999999999
Q ss_pred ccCHH-----HHH----HHHH---cCCcEEEech------hhhhhhhhc
Q 016178 217 VYSFA-----QAA----AAAQ---AGASVIQIFV------GRLRDWARN 247 (394)
Q Consensus 217 VFS~~-----QA~----aaa~---AGa~~ISpFV------gRidd~~~~ 247 (394)
+|.+. +.. .+.+ .++..|+.|- ..+.+++++
T Consensus 263 M~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~ 311 (522)
T TIGR01211 263 MPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKR 311 (522)
T ss_pred ecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHc
Confidence 99853 222 2222 4788888887 456665543
No 266
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=22.33 E-value=2.1e+02 Score=24.03 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHh-hcCCCCCCcEEEEec
Q 016178 162 YDTHGIIRKVHDLLKLY-SEIDVPPERLLFKIP 193 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~-~~~gi~~~nvlIKIP 193 (394)
.+.+...+-+++|.++. +++||+++||+|.+=
T Consensus 69 ~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~ 101 (116)
T PTZ00397 69 ISRSNNSSIAAAITKILASHLKVKSERVYIEFK 101 (116)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 35676777777787766 568999999999874
No 267
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=22.29 E-value=1.5e+02 Score=33.45 Aligned_cols=58 Identities=17% Similarity=0.374 Sum_probs=47.6
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--hHHHHHHHHHHc
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRLLESE 208 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--eGi~A~~~L~~e 208 (394)
.|.+|-++--++.+..++|++-|.+.++++++.|. .||+|-+-++. ..+.|.|.|..+
T Consensus 232 ~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f--~diviS~KsSn~~~~V~AyR~La~~ 291 (733)
T PLN02925 232 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDY--HNFVFSMKASNPVVMVQAYRLLVAE 291 (733)
T ss_pred CcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCC--CcEEEEEEcCChHHHHHHHHHHHHH
Confidence 47777777777777889999999999999999999 78888777765 778888777654
No 268
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=22.21 E-value=4.5e+02 Score=28.23 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=72.7
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChh-HHHHHHHHHHcCceeeEec-cc-CHHHHHHHHHc----CCc
Q 016178 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ-GIEASRLLESEGIQTHLTF-VY-SFAQAAAAAQA----GAS 232 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~e-Gi~A~~~L~~eGI~vN~Tl-VF-S~~QA~aaa~A----Ga~ 232 (394)
..+++++.++-|+.|.++ || +.|=+=.|+..+ =.++++.+...+-+.-++. += ...-...+.++ +..
T Consensus 18 ~~~s~e~K~~ia~~L~~~----GV--~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~~ 91 (494)
T TIGR00973 18 ASLTVEEKLQIALALERL----GV--DIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKF 91 (494)
T ss_pred CCcCHHHHHHHHHHHHHc----CC--CEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCCC
Confidence 456677666666666655 45 566677777653 3566666654432222221 11 12222333343 567
Q ss_pred EEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHH--HhhcCChhhhHh------hhCCCe
Q 016178 233 VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM--AAAVRNKQDLFS------LLGVDY 304 (394)
Q Consensus 233 ~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vL--aAS~R~~~~i~~------laG~D~ 304 (394)
.|..|++--+-+...+.. ...+..+..+.++.+|.+++|..+..= -++-.+++.+.+ .+|++.
T Consensus 92 ~v~i~~~~S~~h~~~~l~---------~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~ 162 (494)
T TIGR00973 92 RIHTFIATSPIHLEHKLK---------MTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATT 162 (494)
T ss_pred EEEEEEccCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 788887754444332222 111236778888889999887643221 122223333332 479888
Q ss_pred ecccHH
Q 016178 305 IIAPLK 310 (394)
Q Consensus 305 lTip~~ 310 (394)
+.+|.+
T Consensus 163 i~l~DT 168 (494)
T TIGR00973 163 INIPDT 168 (494)
T ss_pred EEeCCC
Confidence 766544
No 269
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.05 E-value=1.5e+02 Score=29.70 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=44.2
Q ss_pred ccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhh
Q 016178 217 VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL 296 (394)
Q Consensus 217 VFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i 296 (394)
+=|++|+..|+++|+++|- +|. -....++++.++.+. +..+.++..-|.+++
T Consensus 201 v~tleea~ea~~~gaDiI~-----LDn--------------------~s~e~l~~av~~~~~---~~~leaSGGI~~~ni 252 (281)
T PRK06106 201 VDTLDQLEEALELGVDAVL-----LDN--------------------MTPDTLREAVAIVAG---RAITEASGRITPETA 252 (281)
T ss_pred eCCHHHHHHHHHcCCCEEE-----eCC--------------------CCHHHHHHHHHHhCC---CceEEEECCCCHHHH
Confidence 4499999999999998873 221 124556666665543 223455556788888
Q ss_pred Hh--hhCCCeecccH
Q 016178 297 FS--LLGVDYIIAPL 309 (394)
Q Consensus 297 ~~--laG~D~lTip~ 309 (394)
.+ ..|+|++.+..
T Consensus 253 ~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 253 PAIAASGVDLISVGW 267 (281)
T ss_pred HHHHhcCCCEEEeCh
Confidence 76 68999987654
No 270
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.01 E-value=2.3e+02 Score=29.84 Aligned_cols=137 Identities=18% Similarity=0.279 Sum_probs=82.0
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC--ChhHHHHHHHHHHc--CceeeEecccCHHHHHHH
Q 016178 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS--TWQGIEASRLLESE--GIQTHLTFVYSFAQAAAA 226 (394)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa--T~eGi~A~~~L~~e--GI~vN~TlVFS~~QA~aa 226 (394)
+|..-|.+ .+++.++++.|++. |+ +-|+|=... ...-+..++.+.+. ++.+-+--|-|.++|..+
T Consensus 143 ~v~aavg~-----~~~~~~~v~~lv~a----Gv--DvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l 211 (404)
T PRK06843 143 RVGAAVSI-----DIDTIERVEELVKA----HV--DILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDL 211 (404)
T ss_pred EEEEEEeC-----CHHHHHHHHHHHhc----CC--CEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHH
Confidence 45555543 23366788878775 23 445554322 12334666777665 456666679999999999
Q ss_pred HHcCCcEEEechh--hhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHh-hcCChhhhHh--hhC
Q 016178 227 AQAGASVIQIFVG--RLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAA-AVRNKQDLFS--LLG 301 (394)
Q Consensus 227 a~AGa~~ISpFVg--Ridd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaA-S~R~~~~i~~--laG 301 (394)
.++|+..|..=+| .+.- .+...+ .| .|-+..+..+.++.++.+ ..|++. .+++..++.. .+|
T Consensus 212 ~~aGaD~I~vG~g~Gs~c~-tr~~~g---------~g-~p~ltai~~v~~~~~~~~--vpVIAdGGI~~~~Di~KALalG 278 (404)
T PRK06843 212 ISVGADCLKVGIGPGSICT-TRIVAG---------VG-VPQITAICDVYEVCKNTN--ICIIADGGIRFSGDVVKAIAAG 278 (404)
T ss_pred HHcCCCEEEECCCCCcCCc-ceeecC---------CC-CChHHHHHHHHHHHhhcC--CeEEEeCCCCCHHHHHHHHHcC
Confidence 9999999873211 1110 000000 01 134556666667666554 445544 4889999987 599
Q ss_pred CCeecccHHH
Q 016178 302 VDYIIAPLKV 311 (394)
Q Consensus 302 ~D~lTip~~v 311 (394)
+|.+.+.-.+
T Consensus 279 A~aVmvGs~~ 288 (404)
T PRK06843 279 ADSVMIGNLF 288 (404)
T ss_pred CCEEEEccee
Confidence 9998876554
No 271
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=21.66 E-value=3.2e+02 Score=29.14 Aligned_cols=99 Identities=21% Similarity=0.334 Sum_probs=59.1
Q ss_pred CcEEEEecCChhHH--------HHHHHHHHcCceeeEecccCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccch
Q 016178 186 ERLLFKIPSTWQGI--------EASRLLESEGIQTHLTFVYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDD 256 (394)
Q Consensus 186 ~nvlIKIPaT~eGi--------~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~ 256 (394)
.+|+-||+.....- +-++.|.+.|+- |.+||.++.++| +..|.. + .+. + +-
T Consensus 136 ~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~i-------t~eEA~~a~~~g~aD~Ivv--e-~EA-G----GH----- 195 (444)
T TIGR02814 136 NRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGRI-------TREEAELARRVPVADDICV--E-ADS-G----GH----- 195 (444)
T ss_pred ceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCCC-------CHHHHHHHHhCCCCcEEEE--e-ccC-C----CC-----
Confidence 47888875433221 235778889977 999999999999 466643 3 222 1 10
Q ss_pred hhccCCCchHHHHHHHH---HHH-HHcCCch--HHHHh-hcCChhhhHh--hhCCCeecc
Q 016178 257 ALKRGEDPALSLVSKAY---NYI-HKYGHKS--KLMAA-AVRNKQDLFS--LLGVDYIIA 307 (394)
Q Consensus 257 ~~~~~~d~Gv~~v~~iy---~~~-~~~g~~t--~vLaA-S~R~~~~i~~--laG~D~lTi 307 (394)
.+..+...++..+. +.. ++++|.. .|++| .+-+.+.+.+ .+|+|.+-+
T Consensus 196 ---tg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 196 ---TDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVT 252 (444)
T ss_pred ---CCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEe
Confidence 01123444555553 333 3345544 47777 5567777776 589988743
No 272
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=21.63 E-value=4.2e+02 Score=23.83 Aligned_cols=112 Identities=11% Similarity=0.098 Sum_probs=61.3
Q ss_pred EEEEecCChhHHHHHHHHHHcCceeeEecc-cCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchH
Q 016178 188 LLFKIPSTWQGIEASRLLESEGIQTHLTFV-YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPAL 266 (394)
Q Consensus 188 vlIKIPaT~eGi~A~~~L~~eGI~vN~TlV-FS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv 266 (394)
|.|=.-.+.+-.+.++.+.+.|+.+=+++- -+..+.......++.|+.. .+. .. +. .+. .. ...+.
T Consensus 84 v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~-~~~-~~-g~--tg~-----~~---~~~~~ 150 (211)
T cd00429 84 ITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLV-MSV-NP-GF--GGQ-----KF---IPEVL 150 (211)
T ss_pred EEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEE-EEE-CC-CC--CCc-----cc---CHHHH
Confidence 334333345556778888888887666552 1233333333334666642 121 00 00 000 00 12356
Q ss_pred HHHHHHHHHHHHcCCchHHHHhhcCChhhhHh--hhCCCeecccHHHH
Q 016178 267 SLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (394)
Q Consensus 267 ~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~~--laG~D~lTip~~vl 312 (394)
..++++.++..++.++..++++..-+.+++-+ ..|+|.+.+.-.+.
T Consensus 151 ~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 151 EKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHh
Confidence 66777777665544455566666666788876 48999988776664
No 273
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=21.60 E-value=1.5e+02 Score=31.69 Aligned_cols=53 Identities=11% Similarity=0.047 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCceeeEecccCHHHHHHHHHcC--CcEEEechhhhhhhhhcCCC
Q 016178 198 GIEASRLLESEGIQTHLTFVYSFAQAAAAAQAG--ASVIQIFVGRLRDWARNHSG 250 (394)
Q Consensus 198 Gi~A~~~L~~eGI~vN~TlVFS~~QA~aaa~AG--a~~ISpFVgRidd~~~~~~~ 250 (394)
--+.-+.|++.||++|.++-.+--.-+..+-.+ ..+++||.||-..+..++.+
T Consensus 207 ~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~~~~~~c~~~P~ls~aa~~Le~~~g 261 (457)
T CHL00073 207 ASQLTLELKRQGIKVSGWLPSQRYTDLPSLGEGVYVCGVNPFLSRTATTLMRRRK 261 (457)
T ss_pred HHHHHHHHHHcCCeEeEEeCCCCHHHHHhhCcccEEEEcCcchHHHHHHHHHHhC
Confidence 345557788889999966664333333333334 34679999999988855444
No 274
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=21.54 E-value=4.1e+02 Score=25.88 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcEEEEecC----Ch----hHHHHHHHHHHcCceeeEec
Q 016178 164 THGIIRKVHDLLKLYSEIDVPPERLLFKIPS----TW----QGIEASRLLESEGIQTHLTF 216 (394)
Q Consensus 164 ~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa----T~----eGi~A~~~L~~eGI~vN~Tl 216 (394)
.+++++..++.++...+.||+++++++=-.. |. +-|+.+++|.+.|.++.+-+
T Consensus 143 ~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~ 203 (257)
T TIGR01496 143 VEEVLRFLEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGA 203 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 6778888888888888999998898876422 22 33577788877787765544
No 275
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=21.53 E-value=5e+02 Score=25.24 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=31.1
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCC
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDV 183 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi 183 (394)
|-++-+..||.=.-+.+..++-|+.+.++.+++|+
T Consensus 98 PD~lvfDLDP~~~~~f~~v~~~A~~~r~~L~~lgL 132 (227)
T cd04862 98 PDRIVFDLDPGPGVPWKAVVEAALLVRELLDELGL 132 (227)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 56889999998777899999999999999998877
No 276
>PRK11059 regulatory protein CsrD; Provisional
Probab=21.47 E-value=1.1e+03 Score=25.74 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=81.4
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcC-CCCCCcEEEEecCC------hhHHHHHHHHHHcCceeeEecc----
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEI-DVPPERLLFKIPST------WQGIEASRLLESEGIQTHLTFV---- 217 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~-gi~~~nvlIKIPaT------~eGi~A~~~L~~eGI~vN~TlV---- 217 (394)
+.++++-+++..-.|.+ ..+ .+.....+. +..++++++.|+.+ ..-.+.++.|.+.|+++-+-=.
T Consensus 483 ~~~l~inls~~~l~~~~-f~~---~l~~~l~~~~~~~~~~l~~Ei~E~~~~~~~~~~~~~l~~L~~~G~~iaiddfG~g~ 558 (640)
T PRK11059 483 EENLSINLSVDSLLSRA-FQR---WLRDTLLQCPRSQRKRLIFELAEADVCQHISRLRPVLRMLRGLGCRLAVDQAGLTV 558 (640)
T ss_pred CCeEEEEcCHHHhCChh-HHH---HHHHHHHhcCCCCcceEEEEEechhhhcCHHHHHHHHHHHHHCCCEEEEECCCCCc
Confidence 45889988776444432 222 344444445 67789999999986 3457788999999999866422
Q ss_pred cCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhhhH
Q 016178 218 YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF 297 (394)
Q Consensus 218 FS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~i~ 297 (394)
-|+. ++ .+-..+||-.=-+-+.+.. .....-..++.+.+..+.. ..+|++-.+.+.++..
T Consensus 559 ~s~~-~L--~~l~~d~iKid~s~v~~i~---------------~~~~~~~~v~sli~~a~~~--~i~viAegVEt~~~~~ 618 (640)
T PRK11059 559 VSTS-YI--KELNVELIKLHPSLVRNIH---------------KRTENQLFVRSLVGACAGT--ETQVFATGVESREEWQ 618 (640)
T ss_pred ccHH-HH--HhCCCCEEEECHHHHhhhh---------------cCchhHHHHHHHHHHHHHC--CCeEEEEEeCCHHHHH
Confidence 1221 11 1112333332222121110 0112345677777777765 4788999999988886
Q ss_pred h--hhCCCeecc
Q 016178 298 S--LLGVDYIIA 307 (394)
Q Consensus 298 ~--laG~D~lTi 307 (394)
. .+|||++-.
T Consensus 619 ~l~~lGvd~~QG 630 (640)
T PRK11059 619 TLQELGVSGGQG 630 (640)
T ss_pred HHHHhCCCeeec
Confidence 5 699998643
No 277
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=21.43 E-value=4.3e+02 Score=26.81 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=53.5
Q ss_pred hhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC------C-hhH--HHHHHHH
Q 016178 135 KALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS------T-WQG--IEASRLL 205 (394)
Q Consensus 135 ~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa------T-~eG--i~A~~~L 205 (394)
+...++..+|.+.++.+|++-+++.-..+---.++++.++.+..++.|+| -|-|-... . ..| ...++++
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~i 270 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHI 270 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHH
Confidence 34444455555556677888776531111011345666666666666663 33332211 0 123 4455666
Q ss_pred HHc-CceeeEe-cccCHHHHHHHHHcC-CcEEE
Q 016178 206 ESE-GIQTHLT-FVYSFAQAAAAAQAG-ASVIQ 235 (394)
Q Consensus 206 ~~e-GI~vN~T-lVFS~~QA~aaa~AG-a~~IS 235 (394)
.+. +|+|-++ -+.+++++..+.+.| +++|+
T Consensus 271 k~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 271 REHANIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred HhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 554 6776544 446888888888876 66543
No 278
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=21.21 E-value=32 Score=39.86 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=34.4
Q ss_pred CHHHHhhccc-ceeccccchhhhh-----ccCCCCcccChhHHHHHhcCChHHHHHHHHHH
Q 016178 59 TELDAVSSFS-EIVPDTVVFDDFE-----RFPPTAATVSSSLLLGICSLPDTIFRNAVDMA 113 (394)
Q Consensus 59 ~~Ld~L~~~t-~ivaDt~d~~~i~-----~~~p~daTTNpsli~~~~~nP~ti~~~ai~~a 113 (394)
|.|.+|.++. .|+.|.-+=+-|. ++--. ..+.|+|+|| +||+++|...
T Consensus 2 ~~l~~l~~~gqsiWlD~l~R~~l~~g~l~~li~~------~~~~GvTsNP-sIf~~Ai~~~ 55 (948)
T PRK09533 2 NPLKALAQHGQSVWLDFLARGFIAKGELKRLVEE------DGLRGVTSNP-AIFEKAIGSS 55 (948)
T ss_pred chHHHHHHcCcEEeecccchhcccCchHHHHHHh------CCCceeecCH-HHHHHHHhCC
Confidence 6788898885 4999988754444 22222 2457999999 9999998643
No 279
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=21.18 E-value=9.3e+02 Score=24.93 Aligned_cols=133 Identities=15% Similarity=0.198 Sum_probs=81.7
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh--hHHHHHHHHHHc--CceeeEecccCHHHHH
Q 016178 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRLLESE--GIQTHLTFVYSFAQAA 224 (394)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~--eGi~A~~~L~~e--GI~vN~TlVFS~~QA~ 224 (394)
.+++++-|.- .+...+.+..|.+.. ...+-|+|-+.--. -=+..++.+.+. +..+-+-=|-+.++|.
T Consensus 95 ~~~~~vsvG~-----~~~d~er~~~L~~a~----~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~ 165 (343)
T TIGR01305 95 LQNVAVSSGS-----SDNDLEKMTSILEAV----PQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVE 165 (343)
T ss_pred cceEEEEecc-----CHHHHHHHHHHHhcC----CCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHH
Confidence 4566665422 333446666666641 22366778776544 227778888875 5666666689999999
Q ss_pred HHHHcCCcEEEec-------hhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHH-HhhcCChhhh
Q 016178 225 AAAQAGASVIQIF-------VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDL 296 (394)
Q Consensus 225 aaa~AGa~~ISpF-------VgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vL-aAS~R~~~~i 296 (394)
.+.++|+..|=+= .+|.-+- .+ .|-+..+.++.+..+ +++..|+ =..+|+..+|
T Consensus 166 ~Li~aGAD~ikVgiGpGSicttR~~~G---------------vg-~pqltAv~~~a~aa~--~~~v~VIaDGGIr~~gDI 227 (343)
T TIGR01305 166 ELILSGADIVKVGIGPGSVCTTRTKTG---------------VG-YPQLSAVIECADAAH--GLKGHIISDGGCTCPGDV 227 (343)
T ss_pred HHHHcCCCEEEEcccCCCcccCceeCC---------------CC-cCHHHHHHHHHHHhc--cCCCeEEEcCCcCchhHH
Confidence 9999998865433 3333220 01 133444444444443 3345555 4578889999
Q ss_pred Hh--hhCCCeeccc
Q 016178 297 FS--LLGVDYIIAP 308 (394)
Q Consensus 297 ~~--laG~D~lTip 308 (394)
.. .+|+|.+.+.
T Consensus 228 ~KALA~GAd~VMlG 241 (343)
T TIGR01305 228 AKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHcCCCEEEEC
Confidence 87 5999999888
No 280
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.14 E-value=2.6e+02 Score=26.33 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecC-ChhHHHHHHHHHHc-C--ceeeEecccCHHHHHHHHHcCCcE-EEe
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESE-G--IQTHLTFVYSFAQAAAAAQAGASV-IQI 236 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPa-T~eGi~A~~~L~~e-G--I~vN~TlVFS~~QA~aaa~AGa~~-ISp 236 (394)
.+.+..++.++.+++- |+. +|-|.. |+.++++++.|.++ + +.+=+-.|++.+|+..|.++|+.+ +||
T Consensus 19 ~~~~~~~~~~~a~~~g----Gi~----~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 19 ITPDEALAHVGALIEA----GFR----AIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred CCHHHHHHHHHHHHHC----CCC----EEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 4566666666666553 452 333333 34677788888765 3 566677899999999999999864 444
No 281
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=21.10 E-value=82 Score=31.55 Aligned_cols=96 Identities=24% Similarity=0.210 Sum_probs=55.6
Q ss_pred CcEEEE---ecCChhHHHHHHHHHHc-Cceee-EecccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhcc
Q 016178 186 ERLLFK---IPSTWQGIEASRLLESE-GIQTH-LTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKR 260 (394)
Q Consensus 186 ~nvlIK---IPaT~eGi~A~~~L~~e-GI~vN-~TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~ 260 (394)
+-|||| |.+...=-+|++.+.+. +-... =--+=|++|+..|++||+++|= .|.+
T Consensus 159 DavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiIm------LDNm--------------- 217 (280)
T COG0157 159 DAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIM------LDNM--------------- 217 (280)
T ss_pred ceEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEE------ecCC---------------
Confidence 457887 22221112355555544 32221 2246799999999999999873 2211
Q ss_pred CCCchHHHHHHHHHHHHHcCCchHHHHhhc-CChhhhHh--hhCCCeeccc
Q 016178 261 GEDPALSLVSKAYNYIHKYGHKSKLMAAAV-RNKQDLFS--LLGVDYIIAP 308 (394)
Q Consensus 261 ~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~-R~~~~i~~--laG~D~lTip 308 (394)
....++++.+++...+ ..++-||. -+.+++.+ ..|+|++.+.
T Consensus 218 ----~~e~~~~av~~l~~~~--~~~lEaSGgIt~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 218 ----SPEELKEAVKLLGLAG--RALLEASGGITLENIREYAETGVDVISVG 262 (280)
T ss_pred ----CHHHHHHHHHHhccCC--ceEEEEeCCCCHHHHHHHhhcCCCEEEeC
Confidence 3456777777763333 33444444 46777765 7899998665
No 282
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.67 E-value=2.8e+02 Score=28.34 Aligned_cols=72 Identities=22% Similarity=0.239 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCh-----hH-HHHHHHHHHc-----CceeeEecccCHHHHHHHHHcC
Q 016178 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----QG-IEASRLLESE-----GIQTHLTFVYSFAQAAAAAQAG 230 (394)
Q Consensus 162 ~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~-----eG-i~A~~~L~~e-----GI~vN~TlVFS~~QA~aaa~AG 230 (394)
.|.+..++-++.+.+ .|++ + |-||-|- +. -+.++.|.+. |++++=|+=...+-+++|.++|
T Consensus 139 ~~~~~l~~~~~~~~~----~Ga~--~--i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aG 210 (365)
T TIGR02660 139 ADPDFLVELAEVAAE----AGAD--R--FRFADTVGILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAG 210 (365)
T ss_pred CCHHHHHHHHHHHHH----cCcC--E--EEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhC
Confidence 345555555555444 4553 3 5666654 22 2333444433 8899999999999999999999
Q ss_pred CcEEEechhhh
Q 016178 231 ASVIQIFVGRL 241 (394)
Q Consensus 231 a~~ISpFVgRi 241 (394)
+..|..=++=+
T Consensus 211 a~~vd~tl~Gi 221 (365)
T TIGR02660 211 ATHVNTTVNGL 221 (365)
T ss_pred CCEEEEEeecc
Confidence 99877665544
No 283
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=20.64 E-value=2.9e+02 Score=28.49 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=43.3
Q ss_pred EEEecCChhHHHHHHHHHHcCceeeE-ecccCHHHHHHHHHcCCcEEEechhhhhhhh
Q 016178 189 LFKIPSTWQGIEASRLLESEGIQTHL-TFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (394)
Q Consensus 189 lIKIPaT~eGi~A~~~L~~eGI~vN~-TlVFS~~QA~aaa~AGa~~ISpFVgRidd~~ 245 (394)
+|-|.--..|.+.++.|.++||.+.+ ---=+.+|+..|.++|++.+.-+.|-+.-..
T Consensus 168 ~iTlAPE~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~~THlfNaM~~~~ 225 (382)
T PRK11170 168 KVTLAPEMVDAEVIRKLVEAGIVVSAGHSNATYEEAKAGFRAGITFATHLYNAMPYIT 225 (382)
T ss_pred EEEECCCCCcHHHHHHHHHCCcEEEeeCCcCCHHHHHHHHHcCCCEEeeccccCCccc
Confidence 33333335678999999999998764 2234799999999999999998888776543
No 284
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.63 E-value=1.6e+02 Score=22.87 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=28.6
Q ss_pred CcEEEEecCChhHHHHHHHHHHcCceeeEecccCHHHH
Q 016178 186 ERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQA 223 (394)
Q Consensus 186 ~nvlIKIPaT~eGi~A~~~L~~eGI~vN~TlVFS~~QA 223 (394)
++.+|=.+.|.++++|=+.|.+.||++ .++=.+.+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~--~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV--RLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE--EEeCCChhc
Confidence 467888999999999999999999955 445555543
No 285
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=20.61 E-value=4.2e+02 Score=25.78 Aligned_cols=68 Identities=25% Similarity=0.314 Sum_probs=44.6
Q ss_pred cccCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCchHHHHhhcCChhh
Q 016178 216 FVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQD 295 (394)
Q Consensus 216 lVFS~~QA~aaa~AGa~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t~vLaAS~R~~~~ 295 (394)
++....|...|.++||+.|.....-+. ...+++++++.+..|... | +-+.|.++
T Consensus 119 fi~~~~qi~~a~~~GAD~VlLi~~~l~-----------------------~~~l~~li~~a~~lGl~~--l-vevh~~~E 172 (260)
T PRK00278 119 FIIDPYQIYEARAAGADAILLIVAALD-----------------------DEQLKELLDYAHSLGLDV--L-VEVHDEEE 172 (260)
T ss_pred ecCCHHHHHHHHHcCCCEEEEEeccCC-----------------------HHHHHHHHHHHHHcCCeE--E-EEeCCHHH
Confidence 788888999999999998887654431 235667777777766432 1 11344544
Q ss_pred hHh--hhCCCeecccH
Q 016178 296 LFS--LLGVDYIIAPL 309 (394)
Q Consensus 296 i~~--laG~D~lTip~ 309 (394)
+.. .+|+|++-+.+
T Consensus 173 ~~~A~~~gadiIgin~ 188 (260)
T PRK00278 173 LERALKLGAPLIGINN 188 (260)
T ss_pred HHHHHHcCCCEEEECC
Confidence 432 57999887543
No 286
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=20.55 E-value=8.5e+02 Score=24.23 Aligned_cols=95 Identities=21% Similarity=0.140 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcE----EEE----e------c--CCh---h
Q 016178 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERL----LFK----I------P--STW---Q 197 (394)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nv----lIK----I------P--aT~---e 197 (394)
+....+.|...++-+|++-.|-. .|...+.+..+++.+ .|+..=|+ .-| . + ... +
T Consensus 66 ~~~~~~~I~~a~~~Pv~~D~d~G--g~~~~v~r~V~~l~~----aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~ 139 (285)
T TIGR02320 66 RLDVVEFMFDVTTKPIILDGDTG--GNFEHFRRLVRKLER----RGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCG 139 (285)
T ss_pred HHHHHHHHHhhcCCCEEEecCCC--CCHHHHHHHHHHHHH----cCCeEEEEeccCCCccccccCCCCcccccCHHHHHH
Confidence 33345567777777787766654 566655555555544 45533222 112 1 1 112 3
Q ss_pred HHHHHHHHH-HcCceeeEe----c-ccCHHHH----HHHHHcCCcEEEec
Q 016178 198 GIEASRLLE-SEGIQTHLT----F-VYSFAQA----AAAAQAGASVIQIF 237 (394)
Q Consensus 198 Gi~A~~~L~-~eGI~vN~T----l-VFS~~QA----~aaa~AGa~~ISpF 237 (394)
=|+|++.-. ...+-+|+- + ..++++| .+.++|||+.|-+.
T Consensus 140 kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 140 KIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 366666552 335788887 3 4455554 55678899988875
No 287
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=20.53 E-value=2.1e+02 Score=25.93 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=41.8
Q ss_pred ccCCHHHHHHHHHHHHHHh-hcCCCC-CCcEEEEecCChhHHHHHHHHHHc-CceeeE-eccc-CHHHHHHHHHcCCcEE
Q 016178 160 LAYDTHGIIRKVHDLLKLY-SEIDVP-PERLLFKIPSTWQGIEASRLLESE-GIQTHL-TFVY-SFAQAAAAAQAGASVI 234 (394)
Q Consensus 160 la~D~e~~I~eA~~l~~l~-~~~gi~-~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~-TlVF-S~~QA~aaa~AGa~~I 234 (394)
++-|.+.+.++++.+.+.. +.++++ -+.. =+|.+..|++.++++.+. .+.+.+ ..++ ....+..|.++|+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~--~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv 83 (210)
T TIGR01163 6 LSADFARLGEEVKAVEEAGADWIHVDVMDGH--FVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADII 83 (210)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEEcCCCCC--CCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEE
Confidence 5667778888888777752 222221 1111 123444666777777654 444322 2233 3444556778899887
Q ss_pred Ee
Q 016178 235 QI 236 (394)
Q Consensus 235 Sp 236 (394)
..
T Consensus 84 ~v 85 (210)
T TIGR01163 84 TV 85 (210)
T ss_pred EE
Confidence 76
No 288
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=20.41 E-value=8.5e+02 Score=24.19 Aligned_cols=109 Identities=23% Similarity=0.263 Sum_probs=70.4
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeeEe-cccCH
Q 016178 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYSF 220 (394)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lVFS~ 220 (394)
.+.+.++ .+.+-||++-+++.+. ...++++.. +++ ..|-=|.-.+-+..+++|.+. ++++.+- -++++
T Consensus 166 ~vr~~~~-~~~l~vDaN~~~~~~~-a~~~~~l~~----~~~----~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs~~~~ 235 (324)
T TIGR01928 166 LRRLRFP-QIPLVIDANESYDLQD-FPRLKELDR----YQL----LYIEEPFKIDDLSMLDELAKGTITPICLDESITSL 235 (324)
T ss_pred HHHHhCC-CCcEEEECCCCCCHHH-HHHHHHHhh----CCC----cEEECCCChhHHHHHHHHHhhcCCCEeeCCCcCCH
Confidence 4444454 4778888887777765 233333332 221 366666654445555666554 5665443 47889
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 221 ~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
.+.....+.| +.++.|=+.++ -|+...+++.++.+.+|.++
T Consensus 236 ~~~~~~~~~~~~dvi~~d~~~~----------------------GGit~~~~~~~~A~~~gi~~ 277 (324)
T TIGR01928 236 DDARNLIELGNVKVINIKPGRL----------------------GGLTEVQKAIETCREHGAKV 277 (324)
T ss_pred HHHHHHHHcCCCCEEEeCcchh----------------------cCHHHHHHHHHHHHHcCCeE
Confidence 9988888776 67887766654 27888999999988888655
No 289
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=20.14 E-value=9.9e+02 Score=24.84 Aligned_cols=106 Identities=19% Similarity=0.186 Sum_probs=70.6
Q ss_pred CC-eEEEEecCC-----------------ccCCHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCChhHHHHHHHHHHc--
Q 016178 149 PG-RVSTEVDAR-----------------LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-- 208 (394)
Q Consensus 149 ~G-~VS~EVdp~-----------------la~D~e~~I~eA~~l~~l~~~~gi~~~nvlIKIPaT~eGi~A~~~L~~e-- 208 (394)
+| .|.+-||.. -..+.+++++-.+++.+-| +=+.|-=|...+-+...+.|.+.
T Consensus 230 ~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~-------~i~~iEdPl~~~D~eg~~~L~~~~g 302 (408)
T cd03313 230 PGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKY-------PIVSIEDPFDEDDWEGWAKLTAKLG 302 (408)
T ss_pred CCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhC-------CcEEEEeCCCCcCHHHHHHHHHhcC
Confidence 56 588888862 1234455555555554433 23567778866656666666666
Q ss_pred -CceeeEec--ccCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCcccchhhccCCCchHHHHHHHHHHHHHcCCch
Q 016178 209 -GIQTHLTF--VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (394)
Q Consensus 209 -GI~vN~Tl--VFS~~QA~aaa~AG-a~~ISpFVgRidd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~~~~g~~t 283 (394)
.+++-.-= ++++.+...+.+.| +.++.|=++++ -|+.-+.++.++.+.+|..+
T Consensus 303 ~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~i----------------------GGite~~~ia~lA~~~G~~~ 359 (408)
T cd03313 303 DKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQI----------------------GTLTETIEAIKLAKKNGYGV 359 (408)
T ss_pred CCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEccccc----------------------CCHHHHHHHHHHHHHcCCeE
Confidence 67776554 35799988888876 57777776665 27888888888888888655
No 290
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.08 E-value=3.5e+02 Score=28.01 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=34.9
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhhc
Q 016178 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSE 180 (394)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~l~~l~~~ 180 (394)
+.|+.+-+.+.-+=|-|.-.+|.+..++-|++|.++.++
T Consensus 43 ~~Il~g~d~rllvIvGPCSIhd~~~a~eyA~rL~~l~~~ 81 (348)
T PRK12756 43 EKILNGEDPRLLVIIGPCSIHDTDAALDYATRLAALREQ 81 (348)
T ss_pred HHHhcCCCCceEEEecCCcCCCHHHHHHHHHHHHHHHHH
Confidence 477788888999999999999999999999999998765
Done!