RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016178
(394 letters)
>gnl|CDD|188644 cd00957, Transaldolase_TalAB, Transaldolases including both TalA
and TalB. Transaldolases including both TalA and TalB.
The enzyme catalyses the reversible transfer of a
dyhydroxyacetone moiety, derived from
fructose-6-phosphate to erythrose-4-phosphate yielding
sedoheptulose-7-phosphate and
glyceraldehyde-3-phosphate. The catalytic mechanism is
similar to other class I aldolases. The enzyme is found
in the non-oxidative branch of the pentose phosphate
pathway and forms a dimer in solution.
Length = 313
Score = 403 bits (1037), Expect = e-141
Identities = 127/327 (38%), Positives = 187/327 (57%), Gaps = 14/327 (4%)
Query: 59 TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSS 118
+LD + F+ IV DT F+ ++F P AT + SL+L LP + VD A+A +
Sbjct: 1 NQLDQLKKFTTIVADTGDFEAIKKFKPQDATTNPSLILAAAKLP--EYNKLVDEAIAYAK 58
Query: 119 CCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLY 178
+ + E ++S +K LVN G ++ K++PGRVSTEVDARL++DT+ I K L+KLY
Sbjct: 59 K-KGGSDEDQISNALDKLLVNFGTEILKLIPGRVSTEVDARLSFDTNATIAKARKLIKLY 117
Query: 179 SEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFV 238
E + ER+L KI +TW+GI+A++ LE EGI +LT ++SFAQA A A+AG ++I FV
Sbjct: 118 EEAGIDKERILIKIAATWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPFV 177
Query: 239 GRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298
GR+ DW + HSGD A EDP ++ V K YNY K+G+K+K+M A+ RN + +
Sbjct: 178 GRILDWYKKHSGDK----AYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILA 233
Query: 299 LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTKWDQLSLASA 358
L G DY+ +L+ LK S + K S NF +E +W A
Sbjct: 234 LAGCDYLTISPALLEELKNSTAKVERKLD--PAASKALDIHPNFLDESAFRWALNEDA-- 289
Query: 359 MGPASVELLAAGLDGYVNQARRVEDLF 385
+VE L+ G+ G+ A ++E L
Sbjct: 290 ---MAVEKLSEGIRGFAKDAVKLEKLI 313
>gnl|CDD|162081 TIGR00874, talAB, transaldolase. This family includes the majority
of known and predicted transaldolase sequences,
including E. coli TalA and TalB. It excluded two other
families. The first includes E. coli transaldolase-like
protein TalC. The second family includes the putative
transaldolases of Helicobacter pylori and Mycobacterium
tuberculosis [Energy metabolism, Pentose phosphate
pathway].
Length = 317
Score = 214 bits (546), Expect = 8e-67
Identities = 115/331 (34%), Positives = 181/331 (54%), Gaps = 18/331 (5%)
Query: 59 TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSS 118
+LD + F+ +V DT + +++ P AT + SL+L LP + +D A+A
Sbjct: 1 NQLDQLKQFTVVVADTGDIEAIKKYQPQDATTNPSLILAAAQLPK--YAELIDEAVAWGK 58
Query: 119 CCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLY 178
++++ ++ +K VN G ++ K+VPGRVSTEVDARL++DT + K L+KLY
Sbjct: 59 KQGKDDAQ-QVENALDKLAVNFGLEILKIVPGRVSTEVDARLSFDTEATVEKARHLIKLY 117
Query: 179 SEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFV 238
+ V +R+L KI STW+GI A+ LE EGI +LT ++SF QA A A+A ++I FV
Sbjct: 118 EDAGVDKKRILIKIASTWEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPFV 177
Query: 239 GRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298
GR+ DW + +G E EDP ++ V K YNY K+G+ +++M A+ RNK+++ +
Sbjct: 178 GRILDWYKAATGKKEYSIE----EDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILA 233
Query: 299 LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTK--WDQLSLA 356
L G D + +L LKES R+L P+SA + L + + L
Sbjct: 234 LAGCDRLTISPALLDELKES------TGPVERKLDPESAKKVDKQPIILDESEFRFLHNE 287
Query: 357 SAMGPASVELLAAGLDGYVNQARRVEDLFEK 387
AM + E LA G+ + ++E L E+
Sbjct: 288 DAM---ATEKLAEGIRKFAADQEKLEKLLEE 315
>gnl|CDD|240406 PTZ00411, PTZ00411, transaldolase-like protein; Provisional.
Length = 333
Score = 211 bits (540), Expect = 9e-66
Identities = 108/299 (36%), Positives = 165/299 (55%), Gaps = 18/299 (6%)
Query: 58 STELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLP-------DTI-FRNA 109
+L+A+ + +V DT F ++F P AT + SL+L +P D I + A
Sbjct: 2 PNQLEALKEHTTVVADTGDFSLLKKFQPEDATTNPSLVLAAAQMPEYAHLIDDAIKYAKA 61
Query: 110 VDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIR 169
L D + E EL + +K VN G ++ K+VPGRVSTEVDARL++D ++
Sbjct: 62 NVSRLRDPLLSDEEKEEL-VELVVDKLTVNFGVEILKIVPGRVSTEVDARLSFDKQAMVD 120
Query: 170 KVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229
K ++K+Y E + +R+L K+ STW+GI+A++ LE EGI +LT ++SFAQA A AQA
Sbjct: 121 KARKIIKMYEEAGISKDRILIKLASTWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQA 180
Query: 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAA 289
G ++I FVGR+ DW + PE ++ +DP + V+K YNY K+G+K+ +M A+
Sbjct: 181 GVTLISPFVGRILDWYKK----PEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGAS 236
Query: 290 VRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELT 348
RN ++ L G D + K+L+ L + P E R+L P+ ELT
Sbjct: 237 FRNTGEILELAGCDKLTISPKLLEELANTEDGPVE-----RKLDPEKLTEDTEKLPELT 290
>gnl|CDD|235381 PRK05269, PRK05269, transaldolase B; Provisional.
Length = 318
Score = 209 bits (535), Expect = 5e-65
Identities = 113/334 (33%), Positives = 175/334 (52%), Gaps = 22/334 (6%)
Query: 58 STELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPD--TIFRNAVDMALA 115
+ +L+ + F+ +V DT + +++ P AT + SL+L +P+ + +AV A
Sbjct: 2 TNKLEQLKQFTTVVADTGDIEAIKKYQPQDATTNPSLILKAAQIPEYAPLIDDAVAWAKQ 61
Query: 116 DSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLL 175
S + ++ +K VN G ++ K++PGRVSTEVDARL++DT I K L+
Sbjct: 62 QSG-----DRAQQIDDAIDKLAVNFGLEILKLIPGRVSTEVDARLSFDTEATIAKARKLI 116
Query: 176 KLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQ 235
LY E + +R+L KI STW+GI A+ LE EGI +LT ++SFAQA A A+AG +I
Sbjct: 117 ALYEEAGISKDRILIKIASTWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLIS 176
Query: 236 IFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQD 295
FVGR+ DW + ++G E A EDP + V+K YNY K+G+K+ +M A+ RN
Sbjct: 177 PFVGRILDWYKKNTGKKEYAPA----EDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQ 232
Query: 296 LFSLLGVDYI-IAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTKWDQLS 354
+ L G D + I+P +L+ L S + K S + + TE E +
Sbjct: 233 ILELAGCDRLTISP-ALLEELAASEGELERKLSPPGEAKARPVPL---TEAE---FRWQH 285
Query: 355 LASAMGPASVELLAAGLDGYVNQARRVEDLFEKM 388
AM + E LA G+ + ++E L
Sbjct: 286 NEDAM---ATEKLAEGIRKFAKDQEKLEKLIAAK 316
>gnl|CDD|183458 PRK12346, PRK12346, transaldolase A; Provisional.
Length = 316
Score = 194 bits (494), Expect = 4e-59
Identities = 109/332 (32%), Positives = 170/332 (51%), Gaps = 30/332 (9%)
Query: 60 ELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPD--TIFRNAVDMALADS 117
+LD + F+ +V D+ + + P AT + SLLL LP + +A+
Sbjct: 3 QLDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGLPQYQHLIDDAIAWGKKQG 62
Query: 118 SCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKL 177
E ++ +K VN G ++ K VPGRVSTEVDARL++D I K L+ L
Sbjct: 63 G-----TQEQQVVAACDKLAVNFGAEILKSVPGRVSTEVDARLSFDREKSIEKARHLVDL 117
Query: 178 YSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIF 237
Y + + R+L K+ STW+GI A+ LE EGI +LT ++SFAQA A A+AG +I F
Sbjct: 118 YQQQGIDKSRILIKLASTWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPF 177
Query: 238 VGRLRDWARNHSG-DPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL 296
VGR+ DW + DP + + EDP + V Y+Y ++ +++ +M A+ R + +
Sbjct: 178 VGRIYDWYQARKPMDPYVVE-----EDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQI 232
Query: 297 FSLLGVDYI-IAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYN---FTEEELTKWDQ 352
+L G D + I+P +L+ L+ES + R+L P S +E E +W+
Sbjct: 233 LALAGCDRLTISP-NLLKELQES----ESP--VERKLIPSSQTFPRPAPMSEAEF-RWEH 284
Query: 353 LSLASAMGPASVELLAAGLDGYVNQARRVEDL 384
A A VE L+ G+ + R++EDL
Sbjct: 285 NQDAMA-----VEKLSEGIRLFAVDQRKLEDL 311
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 185 bits (472), Expect = 6e-55
Identities = 110/332 (33%), Positives = 180/332 (54%), Gaps = 21/332 (6%)
Query: 61 LDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCC 120
L+ + + +V DT E+F P AT + SL+ +P +++ VD L +
Sbjct: 6 LEQLRQMTVVVADTGDIQAIEKFTPRDATTNPSLITAAAQMPQ--YQSIVDETLRQARKE 63
Query: 121 ELENSELR--LSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLY 178
++ + ++ F++ V G + K+VPGRVSTEVDARL+YDT I K L+ LY
Sbjct: 64 LGSDAPVEDVVALAFDRLAVAFGLKILKIVPGRVSTEVDARLSYDTEATIAKARKLISLY 123
Query: 179 SEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFV 238
+ + +R+L KI STW+GI+A+ +LE EGI +LT ++ F QA A A+AG ++I FV
Sbjct: 124 EDAGISRDRVLIKIASTWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPFV 183
Query: 239 GRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298
GR+ DW + +G D+ EDP + V++ YNY K+G+K+++M A+ RN ++
Sbjct: 184 GRILDWYKKETG----RDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIE 239
Query: 299 LLGVDYI-IAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTK--WDQLSL 355
L G D + I+P K+L+ L+ + + R+L P +AA + + + +D++
Sbjct: 240 LAGCDLLTISP-KLLEQLRST------EAELPRKLDPANAAGMEIEKIHMDRATFDKMHA 292
Query: 356 ASAMGPASVELLAAGLDGYVNQARRVEDLFEK 387
M AS E L G+ G+ +E L
Sbjct: 293 EDRM--AS-EKLDEGIKGFSKALETLEKLLAH 321
>gnl|CDD|216195 pfam00923, Transaldolase, Transaldolase.
Length = 244
Score = 171 bits (435), Expect = 4e-51
Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 12/179 (6%)
Query: 138 VNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ 197
+ G ++ K + GRVS EVD RLA DT G I + L+ LY +L KIP+TW+
Sbjct: 61 LRPGYEILKGIDGRVSLEVDPRLADDTEGTIAEARRLIALYGR-----PNVLIKIPATWE 115
Query: 198 GIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDA 257
G++A + L +EGI ++T ++S AQA AAA+AGASVI FVGR+ DW GD + A
Sbjct: 116 GLKAIKELSAEGINVNVTLIFSLAQALAAAEAGASVISPFVGRIDDW-----GDKRLGAA 170
Query: 258 LKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLK 316
L+ D ++ + Y Y KYG + ++AA+ RN + +L G D I P L++L
Sbjct: 171 LR--GDDGVANAKEIYQYYKKYGWSTGVLAASFRNVLYVLALAGCDTITIPPDTLEALA 227
>gnl|CDD|223254 COG0176, MipB, Transaldolase [Carbohydrate transport and
metabolism].
Length = 239
Score = 135 bits (341), Expect = 2e-37
Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 24/184 (13%)
Query: 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW 196
V G ++ K+VPGRV TEVD L++D +I + L KL + + + KIP+TW
Sbjct: 49 AVEFGKEILKIVPGRV-TEVDEVLSFDAEAMIEEARRLAKLIDNVGI-----VIKIPATW 102
Query: 197 QGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDD 256
+G++A + LE+EGI+T++T ++S AQA AA+AGA+ I FVGR+ DW G I +
Sbjct: 103 EGLKAIKALEAEGIKTNVTLIFSAAQALLAAEAGATYISPFVGRIDDW--GIDGMLGIAE 160
Query: 257 ALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF--SLLGVDYIIAPLKVLQS 314
+ Y+Y ++G +K + A+ R ++ +L G D + P +L+
Sbjct: 161 ------------AREIYDYYKQHG--AKTLVASARFPNHVYIAALAGADVLTIPPDLLKQ 206
Query: 315 LKES 318
L +
Sbjct: 207 LLKH 210
>gnl|CDD|188631 cd00439, Transaldolase, Transaldolase. Transaldolase. Enzymes
found in the non-oxidative branch of the pentose
phosphate pathway, that catalyze the reversible transfer
of a dihydroxyacetone group from fructose-6-phosphate to
erythrose-4-phosphate yielding sedoheptulose-7-phosphate
and glyceraldehyde-3-phosphate. They are members of the
class I aldolases, who are characterized by using a
Schiff-base mechanism for stabilization of the reaction
intermediates.
Length = 252
Score = 135 bits (341), Expect = 2e-37
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 17/247 (6%)
Query: 73 DTVVFDDFER-FPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSC 131
D D T + S++ S + N L +S ++E++ L
Sbjct: 8 DRPATDLLPLIRGVRGVTTNPSIIQAAISTSN--AYNDQFRTLVESGK-DIESAYWELVV 64
Query: 132 FFNKALVNVGGDLAKMV--PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLL 189
+ + + GRVS EV ARLA DT G++ L K+ + ++
Sbjct: 65 KDIQDACKLFEPIYDQTEADGRVSVEVSARLADDTQGMVEAAKYLSKVVNRRNI-----Y 119
Query: 190 FKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHS 249
KIP+T +GI A + L + GI ++T ++S AQ A A AG SV FV R+
Sbjct: 120 IKIPATAEGIPAIKDLIAAGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTL----- 174
Query: 250 GDPEIDD-ALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAP 308
D ++ L ++ V+ AY + K +++ A+ + + L+G D +
Sbjct: 175 MDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWASFSDTLYVAPLIGCDTVTTM 234
Query: 309 LKVLQSL 315
Sbjct: 235 PDQALEA 241
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 90.7 bits (226), Expect = 3e-21
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 29/176 (16%)
Query: 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEA 201
++ +++ G VS +V + D G++ + L L + V KIP T G++A
Sbjct: 44 KEICEIIDGPVSAQVVST---DAEGMVAEARKLASLGGNVVV-------KIPVTEDGLKA 93
Query: 202 SRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRG 261
+ L EGI+T++T ++S AQA AA+AGA+ + FVGR IDD G
Sbjct: 94 IKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGR-------------IDDL---G 137
Query: 262 EDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF--SLLGVDYIIAPLKVLQSL 315
D + L+ + YG +K++AA++RN Q + +L G D I P VL+ L
Sbjct: 138 GDG-MELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQL 192
>gnl|CDD|234947 PRK01362, PRK01362, putative translaldolase; Provisional.
Length = 214
Score = 86.8 bits (216), Expect = 9e-20
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 29/175 (16%)
Query: 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEAS 202
++ +V G VS EV +A D G+I++ +L K+ + V KIP T +G++A
Sbjct: 45 EICSIVDGPVSAEV---IALDAEGMIKEGRELAKIAPNVVV-------KIPMTPEGLKAV 94
Query: 203 RLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGE 262
+ L EGI+T++T ++S QA AA+AGA+ + FVGRL DD G
Sbjct: 95 KALSKEGIKTNVTLIFSANQALLAAKAGATYVSPFVGRL-------------DDI---GT 138
Query: 263 DPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF--SLLGVDYIIAPLKVLQSL 315
D + L+ YG ++++AA+VR+ + +L G D P KV++ L
Sbjct: 139 D-GMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQL 192
>gnl|CDD|129953 TIGR00875, fsa_talC_mipB, fructose-6-phosphate aldolase, TalC/MipB
family. This model represents a family that includes
the E. coli transaldolase homologs TalC and MipB, both
shown to be fructose-6-phosphate aldolases rather than
transaldolases as previously thought. It is related to
but distinct from the transaldolase family of E. coli
TalA and TalB. The member from Bacillus subtilis becomes
phosphorylated during early stationary phase but not
during exponential growth [Energy metabolism, Pentose
phosphate pathway].
Length = 213
Score = 81.1 bits (200), Expect = 8e-18
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 29/175 (16%)
Query: 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEAS 202
++ + V G VS E + D G++ + +L KL I V KIP T +G++A
Sbjct: 45 EIQEAVEGPVSAETISL---DAEGMVEEAKELAKLAPNIVV-------KIPMTSEGLKAV 94
Query: 203 RLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGE 262
++L+ EGI+T++T V+S AQA AA+AGA+ + FVGRL D G
Sbjct: 95 KILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDD--IGGDG------------ 140
Query: 263 DPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF--SLLGVDYIIAPLKVLQSL 315
+ L+ + + ++++AA+VR+ + + +L+G D PL V+Q L
Sbjct: 141 ---MKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQL 192
>gnl|CDD|188642 cd00955, Transaldolase_like, Transaldolase-like proteins from
plants and bacteria. Transaldolase-like proteins from
plants and bacteria. Transaldolase is found in the
non-oxidative branch of the pentose phosphate pathway,
that catalyze the reversible transfer of a
dihydroxyacetone group from fructose-6-phosphate to
erythrose-4-phosphate yielding sedoheptulose-7-phosphate
and glyceraldehyde-3-phosphate. They are members of the
class I aldolases, who are characterized by using a
Schiff-base mechanism for stabilization of the reaction
intermediates.
Length = 338
Score = 71.2 bits (175), Expect = 1e-13
Identities = 48/163 (29%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEG 209
G VS EV RLA DT G I + +L+ + P L+ KIP+T G+ A L + G
Sbjct: 91 GYVSLEVSPRLADDTQGTIAEAK---RLWKAVGRP--NLMIKIPATEAGLPAIEELIAAG 145
Query: 210 IQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSG--------DPEIDDALKRG 261
I ++T ++S Q A A+A ++ V D ++ S D ID L
Sbjct: 146 ISVNVTLIFSLEQYEAVAEAYLRGLERRVEGGGDLSQVASVASFFVSRVDTLIDKKLDAP 205
Query: 262 EDPALS------LVSKAYNYIHKY--GHKSKLMAAAVRNKQDL 296
E AL AY + G + +AAA Q L
Sbjct: 206 EAKALQGKVAIANAKLAYQEYQEKFSGPRWAALAAAGAKPQRL 248
>gnl|CDD|235117 PRK03343, PRK03343, transaldolase; Validated.
Length = 368
Score = 66.4 bits (163), Expect = 5e-12
Identities = 48/141 (34%), Positives = 66/141 (46%), Gaps = 32/141 (22%)
Query: 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEG 209
GRVS EV RLA+DT I + L++ +D P L+ KIP+T +G+ A L +EG
Sbjct: 104 GRVSIEVSPRLAHDTEATIAEARR---LWAAVDRP--NLMIKIPATPEGLPAIEALIAEG 158
Query: 210 IQTHLTFVYSFAQAAAAAQA---G--------------ASVIQIFVGRLRDWARNHSGDP 252
I ++T ++S + A A A G SV FV R+ D
Sbjct: 159 ISVNVTLIFSVERYRAVADAYLRGLEKRLAAGHDLSKIHSVASFFVSRV---------DT 209
Query: 253 EIDDAL-KRGEDPALSLVSKA 272
E+D L G D AL+L KA
Sbjct: 210 EVDKRLEAIGTDEALALRGKA 230
>gnl|CDD|235171 PRK03903, PRK03903, transaldolase; Provisional.
Length = 274
Score = 57.7 bits (140), Expect = 2e-09
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 28/147 (19%)
Query: 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEG 209
G +S E+D L D G I + +LY I P ++ K+P+T G EA L +G
Sbjct: 43 GFISIEIDPFLEDDAAGSIEEG---KRLYKTIGRP--NVMIKVPATKAGYEAMSALMKKG 97
Query: 210 IQTHLTFVYSFAQAAAAAQA---GAS--------VIQIFVGRLRDWARNHSGDPEIDDAL 258
I + T ++S QA A+A G VI +FV R D +D L
Sbjct: 98 ISVNATLIFSPEQAKECAEALNEGLKKNTKDPKAVISVFVSRF---------DRLLDPKL 148
Query: 259 KRGEDPALSLV---SKAYNYIHKYGHK 282
A S + +K YN I ++ +K
Sbjct: 149 APKNLQAKSGIMNATKCYNQIEQHANK 175
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose
isomerase; Validated.
Length = 948
Score = 53.4 bits (129), Expect = 1e-07
Identities = 45/133 (33%), Positives = 62/133 (46%), Gaps = 27/133 (20%)
Query: 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEG 209
G VS EV LA DT G I + L V L+ K+P+T +G+ A R L +EG
Sbjct: 104 GFVSLEVSPYLALDTEGTIAEARRLWA-----AVDRPNLMIKVPATPEGLPAIRQLIAEG 158
Query: 210 IQTHLTFVYS------FAQA------AAAAQAG-----ASVIQIFVGRLRDWARNHSGDP 252
I ++T ++S A+A A AA+ G ASV FV R+ D A D
Sbjct: 159 INVNVTLLFSQDVYEEVAEAYISGLEARAAKGGDPSHVASVASFFVSRI-DSAV----DK 213
Query: 253 EIDDALKRGEDPA 265
+D+ + DPA
Sbjct: 214 RLDEKIAAANDPA 226
>gnl|CDD|129954 TIGR00876, tal_mycobact, transaldolase, mycobacterial type. This
model describes one of three related but easily
separable famiiles of known and putative transaldolases.
This family and the family typified by E. coli TalA and
TalB both contain experimentally verified examples
[Energy metabolism, Pentose phosphate pathway].
Length = 350
Score = 52.4 bits (125), Expect = 2e-07
Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 32/143 (22%)
Query: 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLES 207
GR+S E+D LA D I + +L K+ +D P L KIP++ GIEA L +
Sbjct: 92 NDGRISIEIDPFLADDAAKSIDEAIELFKI---LDRP--NLFIKIPASEAGIEAISALLA 146
Query: 208 EGIQTHLTFVYSFAQAAAAAQAGA-----------------SVIQIFVGRLRDWARNHSG 250
GI ++T ++S A A A A +V FV R
Sbjct: 147 AGIPVNVTLIFSPKIAGEIADALAKEAEKARQAGHSLSKIHAVASFFVSRF--------- 197
Query: 251 DPEIDDALKR-GEDPALSLVSKA 272
D EID L + G AL L ++A
Sbjct: 198 DKEIDKLLDKIGSRQALELQAQA 220
>gnl|CDD|183653 PRK12653, PRK12653, fructose-6-phosphate aldolase; Reviewed.
Length = 220
Score = 50.9 bits (122), Expect = 2e-07
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 19/130 (14%)
Query: 188 LLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARN 247
++ K+P T +G+ A ++L++EGI T T VY AQ +A AGA + +V R+ A+
Sbjct: 82 IVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRID--AQG 139
Query: 248 HSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYI 305
SG + V+ + + ++K++AA+ + + L G + I
Sbjct: 140 GSG---------------IQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESI 184
Query: 306 IAPLKVLQSL 315
PL V Q +
Sbjct: 185 TLPLDVAQQM 194
>gnl|CDD|183655 PRK12655, PRK12655, fructose-6-phosphate aldolase; Reviewed.
Length = 220
Score = 44.7 bits (106), Expect = 3e-05
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 19/130 (14%)
Query: 188 LLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARN 247
++ KIP T +G+ A + L+ EGI T T VYS AQ AA AGA + +V R+
Sbjct: 82 IVVKIPVTAEGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRV------ 135
Query: 248 HSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRN-KQDLFSLL-GVDYI 305
DA +G D + +V + + + +S ++AA+ + +Q L LL G I
Sbjct: 136 --------DA--QGGD-GIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSI 184
Query: 306 IAPLKVLQSL 315
PL V Q +
Sbjct: 185 TLPLDVAQQM 194
>gnl|CDD|183481 PRK12376, PRK12376, putative translaldolase; Provisional.
Length = 236
Score = 37.6 bits (88), Expect = 0.007
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 34/139 (24%)
Query: 191 KIPSTWQGIEAS----RLLESEGIQTHLTFVYSFAQAAAAAQAGA----SVIQIFVGRLR 242
KIP T E++ + L ++G++ ++T +++ Q A +++ +F GR+
Sbjct: 90 KIPITNTKGESTIPLIKKLSADGVKLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAGRIA 149
Query: 243 DWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSL--- 299
D G DP + L+ +A H +L+ A+ R +++++
Sbjct: 150 D----------------TGVDP-VPLMKEALAICHSK-PGVELLWASPR---EVYNIIQA 188
Query: 300 --LGVDYIIAPLKVLQSLK 316
LG D I VL+ L
Sbjct: 189 DQLGCDIITVTPDVLKKLP 207
>gnl|CDD|183656 PRK12656, PRK12656, fructose-6-phosphate aldolase; Reviewed.
Length = 222
Score = 35.9 bits (83), Expect = 0.020
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSF 220
A D GI++ H++ + + + K+P T G+ A + L++EG T +Y+
Sbjct: 63 AQDYEGILKDAHEIRRQC------GDDVYIKVPVTPAGLAAIKTLKAEGYHITATAIYTV 116
Query: 221 AQAAAAAQAGA 231
Q A +AGA
Sbjct: 117 FQGLLAIEAGA 127
>gnl|CDD|214921 smart00934, OMPdecase, Orotidine 5'-phosphate decarboxylase / HUMPS
family. Orotidine 5'-phosphate decarboxylase
(OMPdecase) catalyzes the last step in the de novo
biosynthesis of pyrimidines, the decarboxylation of OMP
into UMP. In higher eukaryotes OMPdecase is part, with
orotate phosphoribosyltransferase, of a bifunctional
enzyme, while the prokaryotic and fungal OMPdecases are
monofunctional protein.
Length = 212
Score = 32.9 bits (76), Expect = 0.18
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 15/103 (14%)
Query: 286 MAAAVRNKQDLFSLLGVDYII----APLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYN 341
+A A R + LG D + A ++++ E+A V L+ +
Sbjct: 67 VARAARA----AAELGADAVTVHAYAGSDMIEAALEAAKKYGPGLLAVTVLT-------S 115
Query: 342 FTEEELTKWDQLSLASAMGPASVELLAAGLDGYVNQARRVEDL 384
E+L + SL + + AGLDG V A E +
Sbjct: 116 PGAEDLQELGDESLEEQVLRLAKLAKEAGLDGVVCSATEPELI 158
>gnl|CDD|215620 PLN03187, PLN03187, meiotic recombination protein DMC1 homolog;
Provisional.
Length = 344
Score = 30.5 bits (69), Expect = 1.4
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 268 LVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKV 311
+ ++AY Y H+Y + L+ A + ++ F LL VD +IA +V
Sbjct: 196 IYARAYTYEHQY---NLLLGLAAKMAEEPFRLLIVDSVIALFRV 236
>gnl|CDD|219798 pfam08327, AHSA1, Activator of Hsp90 ATPase homolog 1-like protein.
This family includes eukaryotic, prokaryotic and
archaeal proteins that bear similarity to a C-terminal
region of human activator of 90 kDa heat shock protein
ATPase homolog 1 (AHSA1/p38). This protein is known to
interact with the middle domain of Hsp90, and stimulate
its ATPase activity. It is probably a general
upregulator of Hsp90 function, particularly contributing
to its efficiency in conditions of increased stress. p38
is also known to interact with the cytoplasmic domain of
the VSV G protein, and may thus be involved in protein
transport. It has also been reported as being
underexpressed in Down's syndrome. This region is found
repeated in two members of this family.
Length = 125
Score = 29.2 bits (66), Expect = 1.8
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 15/75 (20%)
Query: 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG----IEASRLLESEGIQTHLTFV 217
+ +G +V VPPER+++ + LE EG T LT
Sbjct: 47 FGGNGTYLEV-----------VPPERIVYTWRLFDWPEGGYSTVTVELEEEGGGTRLTLT 95
Query: 218 YSFAQAAAAAQAGAS 232
++ A A + G
Sbjct: 96 HTGEPADEAEEMGME 110
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 30.3 bits (69), Expect = 1.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 233 VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282
I +F RLR+W H PE+D+ +K+ E+ LVS + G +
Sbjct: 154 TINLFSERLREWYSLHF--PELDELVKKHEEYV-KLVS-------ELGDR 193
>gnl|CDD|149922 pfam09015, NgoMIV_restric, NgoMIV restriction enzyme. Members of
this family are prokaryotic DNA restriction enzymes,
exhibiting an alpha/beta structure, with a central
region comprising a mixed six-stranded beta-sheet with
alpha-helices on each side. A long 'arm' protrudes out
of the core of the domain between strands beta2 and
beta3 and is mainly involved in the tetramerisation
interface of the protein. These restriction enzymes
recognise the double-stranded sequence GCCGGC and cleave
after G-1.
Length = 277
Score = 29.8 bits (67), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 278 KYGHKSKLMAAAVRNKQDLFSLLGVDYIIAP 308
+Y H + L A N + L + LG DY I P
Sbjct: 101 QYAHLAALARLAKENPE-LAAALGSDYTIKP 130
>gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE)-like. Peptidase M20 acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) like family of enzymes catalyze analogous
reactions and share a common activator, the metal ion
(usually Co2+ or Zn2+). ArgE catalyzes a broad range of
substrates, including N-acetylornithine,
alpha-N-acetylmethionine and alpha-N-formylmethionine,
while DapE catalyzes the hydrolysis of
N-succinyl-L,L-diaminopimelate (L,L-SDAP) to
L,L-diaminopimelate and succinate. Proteins in this
family are mostly bacterial and have been inferred by
homology as being related to both, ArgE and DapE. This
family also includes N-acetyl-L-citrulline deacetylase
(ACDase; acetylcitrulline deacetylase), a unique, novel
enzyme found in Xanthomonas campestris, a plant
pathogen, in which N-acetyl-L-ornithine is the substrate
for transcarbamoylation reaction, and the product is
N-acetyl-L-citrulline. Thus, in the arginine
biosynthesis pathway, ACDase subsequently catalyzes the
hydrolysis of N-acetyl-L-citrulline to acetate and
L-citrulline.
Length = 365
Score = 29.1 bits (66), Expect = 3.9
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 107 RNAVDMALAD-SSCCELENSELRLSCFFNKALVNV----GGDLAKMVPGRVSTEVDARLA 161
NA+ + EL + +NV GG+ +VP + E+D RL
Sbjct: 191 VNAIYALAKVIGALEELPFALPAEHPLLGPPTLNVGVIKGGEQVNVVPDEATLELDIRLV 250
Query: 162 --YDTHGIIRKVHDLLKLYS-----EIDVPPERLLFKIPST 195
D ++ ++ LL E+D+
Sbjct: 251 PGEDPDEVLAELEALLAQVPPPADVEVDLSVPPPPVVTDPD 291
>gnl|CDD|176908 cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic
ligand-binding SRPBCC domain of an uncharacterized
subgroup of CalC- and Aha1-like proteins. SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a
functionally uncharacterized subgroup of CalC- and
Aha1-like proteins. This group shows similarity to the
SRPBCC domains of Micromonospora echinospora CalC (a
protein which confers resistance to enediynes) and human
Aha1 (one of several co-chaperones which regulate the
dimeric chaperone Hsp90), and belongs to the SRPBCC
domain superfamily of proteins that bind hydrophobic
ligands. SRPBCC domains have a deep hydrophobic
ligand-binding pocket and they bind diverse ligands.
Length = 157
Score = 28.4 bits (64), Expect = 4.5
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 184 PPERLLFKIPSTW-QGIEASRL---LESEGIQTHLTFVYSFAQAAAAAQAGAS 232
PP L F TW +G S + L EG T LT + A A +
Sbjct: 74 PPRLLAF----TWGEGGGESEVRFELAPEGDGTRLTLTHRLLDERFGAGAVGA 122
>gnl|CDD|176856 cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding
SRPBCC domain of Micromonospora echinospora CalC, human
Aha1, and related proteins. This family includes the
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
of Micromonospora echinospora CalC, human Aha1, and
related proteins. Proteins in this group belong to the
SRPBCC domain superfamily of proteins, which bind
hydrophobic ligands. SRPBCC domains have a deep
hydrophobic ligand-binding pocket. MeCalC confers
resistance to the enediyne, calicheamicin gamma 1 (CLM),
by a self sacrificing mechanism which results in
inactivation of both CalC and the highly reactive
diradical enediyne species. MeCalC can also inactivate
two other enediynes, shishijimicin and namenamicin. A
crucial Gly of the MeCalC CLM resistance mechanism is
not conserved in this subgroup. This family also
includes the C-terminal, Bet v1-like domain of Aha1, one
of several co-chaperones, which regulate the dimeric
chaperone Hsp90. Aha1 promotes dimerization of the
N-terminal domains of Hsp90, and stimulates its low
intrinsic ATPase activity, and may regulate the dwell
time of Hsp90 with client proteins. Aha1 can act as
either a positive or negative regulator of
chaperone-dependent activation, depending on the client
protein, but the mechanisms by which these opposing
functions are achieved are unclear. Aha1 is upregulated
in a number of tumor lines co-incident with the
activation of several signaling kinases.
Length = 139
Score = 27.7 bits (62), Expect = 5.4
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 178 YSEIDVPPERLLFKIPSTWQGIEASRL--------LESEGIQTHLTFVYSFAQAAAAAQA 229
E++ PP RL+F TW + + LE G T LT +S A Q
Sbjct: 63 VLEVE-PPRRLVF----TWAFSDETPGPETTVTVTLEETGGGTRLTLTHSGFPEEDAEQE 117
>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 28.7 bits (65), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 166 GIIRKVHDLLKLYSEIDVPPERLLFKIPSTW---QGIEASRLLES 207
+ + LLKLY E + P KI S + + EA R L+S
Sbjct: 287 LLTEVMDKLLKLYEEGKIKP-----KIDSVFPFEEVGEAMRRLQS 326
>gnl|CDD|131292 TIGR02238, recomb_DMC1, meiotic recombinase Dmc1. This model
describes DMC1, a subfamily of a larger family of DNA
repair and recombination proteins. It is eukaryotic only
and most closely related to eukaryotic RAD51. It also
resembles archaeal RadA (TIGR02236) and RadB (TIGR02237)
and bacterial RecA (TIGR02012). It has been
characterized for human as a recombinase active only in
meiosis.
Length = 313
Score = 28.6 bits (64), Expect = 6.4
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 268 LVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKV 311
L ++AY H+ L A + ++ F LL VD I+A +V
Sbjct: 166 LYARAYTSEHQMELLDYL---AAKFSEEPFRLLIVDSIMALFRV 206
>gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.
Length = 129
Score = 27.3 bits (61), Expect = 7.8
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 200 EASRLLESEGIQTHLTFVYSFAQAAAA 226
E + L+E+ ++ + V+ +AA A
Sbjct: 88 ELAELVEAGKLRPVIDRVFPLEEAAEA 114
>gnl|CDD|189038 cd09868, PIN_XPG, PIN domain of Xeroderma pigmentosum
complementation group G (XPG) nuclease, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. The Xeroderma pigmentosum
complementation group G (XPG) nuclease plays a central
role in nucleotide excision repair (NER) in cleaving DNA
bubble structures or loops. XPG is a member of the
structure-specific, 5' nuclease family that catalyzes
hydrolysis of DNA duplex-containing nucleic acid
structures during DNA replication, repair, and
recombination. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region (I
domain). In XPG PIN domains, this arch region can be
quite variable and extensive (400 - 800 residues) in
length and is required for NER activity and for
efficient processing of bubble substrates. Inserted
within the PIN domain of these 5' nucleases is a H3TH
(helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+).
Length = 249
Score = 28.0 bits (63), Expect = 8.0
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 275 YIHKYGHKSKLMAAAVRNK-----QDLFSLLGVDYIIAP 308
+ + + A + + Q+L L G+ YI+AP
Sbjct: 118 AVKSQQQQQERDADEITQEMYDECQELLRLFGIPYIVAP 156
>gnl|CDD|185407 PTZ00035, PTZ00035, Rad51 protein; Provisional.
Length = 337
Score = 28.0 bits (63), Expect = 8.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 268 LVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKV 311
++AYN+ H+ L AA + ++ F+LL VD A +V
Sbjct: 188 AYARAYNHEHQM---QLLSQAAAKMAEERFALLIVDSATALFRV 228
>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of
ribose to ribose-5-phosphate using ATP. This reaction is
the first step in the ribose metabolism. It traps ribose
within the cell after uptake and also prepares the sugar
for use in the synthesis of nucleotides and histidine,
and for entry into the pentose phosphate pathway.
Ribokinase is dimeric in solution.
Length = 292
Score = 27.9 bits (63), Expect = 8.1
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 222 QAAAAAQAGASVIQIFVGRL 241
QA AAA+ GA V +G +
Sbjct: 42 QAVAAARLGARV--AMIGAV 59
>gnl|CDD|179214 PRK01060, PRK01060, endonuclease IV; Provisional.
Length = 281
Score = 28.2 bits (64), Expect = 8.1
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 213 HLTFVYSFAQAAAAAQA-GASVIQIFVGRLRDWARNHSGDPEIDDALKRGED 263
H++ A A A GA+ IF G + W R + I+ E
Sbjct: 7 HVSAAGGLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEK 58
>gnl|CDD|132422 TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase,
anaerobic, C subunit. Members of this protein family
are the membrane-anchoring, non-catalytic C subunit,
product of the glpC gene, of a three-subunit,
FAD-dependent, anaerobic glycerol-3-phosphate
dehydrogenase. GlpC lasks classical hydrophobic
transmembrane helices; Cole, et al suggest interaction
with the membrane may involve amphipathic helices. GlcC
has conserved Cys-containing motifs suggestive of
iron-sulfur binding. This complex is found mostly in
Escherichia coli and closely related species [Energy
metabolism, Anaerobic].
Length = 397
Score = 27.8 bits (62), Expect = 9.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 19 QGRNSRLISTASDVHFNFRSSFPHI 43
+IST+S F R +PH+
Sbjct: 232 DENGIPVISTSSTCSFTLRDEYPHV 256
>gnl|CDD|238807 cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase) present in some modABC operons in
bacteria, which are involved in molybdate transport. In
general, QPRTases are part of the de novo synthesis
pathway of NAD in both prokaryotes and eukaryotes. They
catalyse the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide.
Length = 272
Score = 27.6 bits (62), Expect = 9.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 217 VYSFAQAAAAAQAGASVIQI 236
V S +A AAA+AGA ++Q+
Sbjct: 190 VDSLEEALAAAEAGADILQL 209
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.379
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,208,417
Number of extensions: 1972034
Number of successful extensions: 2151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2120
Number of HSP's successfully gapped: 52
Length of query: 394
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 295
Effective length of database: 6,546,556
Effective search space: 1931234020
Effective search space used: 1931234020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)