RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016178
(394 letters)
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural
genomics, PSI-2, protein structure initiative; 2.79A
{Oleispira antarctica}
Length = 329
Score = 269 bits (689), Expect = 2e-88
Identities = 104/337 (30%), Positives = 174/337 (51%), Gaps = 17/337 (5%)
Query: 53 LDAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPD--TIFRNAV 110
+ A +L+A+ + + +V DT + ++F P AT + SL+L L + + A+
Sbjct: 2 MSAQAKNKLEALKAMTTVVADTGDIEAIKQFKPVDATTNPSLILKAAKLANYQHLIEEAI 61
Query: 111 DMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRK 170
D AL +NS+ L +K VN+G ++ +PG +STEVDARL++DT + K
Sbjct: 62 DWALQIKG--NDKNSQTTLENVGDKLAVNIGCEVLTSIPGVISTEVDARLSFDTQATVAK 119
Query: 171 VHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAG 230
L++LY + + +R+L KI STW+GI+A+++LE+EGI +LT ++ FAQA A A+AG
Sbjct: 120 ARKLIRLYQDAGIDSDRILIKIASTWEGIQAAKILEAEGIHCNLTLLFHFAQAQACAEAG 179
Query: 231 ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAV 290
++I FVGR+ DW + +SG E + EDP + V++ YN+ +G K+ +M A+
Sbjct: 180 TTLISPFVGRILDWYKANSGQSEYSAS----EDPGVVSVTEIYNFYKSHGFKTIVMGASF 235
Query: 291 RNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTKW 350
RN ++ L G D + ++L L+ ++L P EL
Sbjct: 236 RNTGEIEELAGCDRLTISPELLAQLEAD------TSPLEQKLFPIKET---KDTPELLTE 286
Query: 351 DQLSLASAMGPASVELLAAGLDGYVNQARRVEDLFEK 387
A P + + LA G+ + +E + K
Sbjct: 287 ASFRWAMNNDPMAHDKLADGIRRFAADQVTLESMLSK 323
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt,
transferase; 1.40A {Escherichia coli} PDB: 3kof_A
1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Length = 337
Score = 268 bits (687), Expect = 6e-88
Identities = 112/351 (31%), Positives = 188/351 (53%), Gaps = 17/351 (4%)
Query: 38 SSFPHIRASSSSSSSLDAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLG 97
SS H SS ++ +L ++ ++ +V DT + + P AT + SL+L
Sbjct: 3 SSHHHHHHSSGLVPRGSH-MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILN 61
Query: 98 ICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVD 157
+P+ +R +D A+A + + ++ ++ +K VN+G ++ K+VPGR+STEVD
Sbjct: 62 AAQIPE--YRKLIDDAVAWAKQQSNDRAQ-QIVDATDKLAVNIGLEILKLVPGRISTEVD 118
Query: 158 ARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFV 217
ARL+YDT I K L+KLY++ + +R+L K+ STWQGI A+ LE EGI +LT +
Sbjct: 119 ARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLL 178
Query: 218 YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277
+SFAQA A A+AG +I +VGR+ DW + ++ E A EDP + VS+ Y Y
Sbjct: 179 FSFAQARACAEAGVFLISPYVGRILDWYKANTDKKEYAPA----EDPGVVSVSEIYQYYK 234
Query: 278 KYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSA 337
++G+++ +M A+ RN ++ L G D + +L+ L ES + + K S+ + + A
Sbjct: 235 EHGYETVVMGASFRNIGEILELAGCDRLTIAPTLLKELAESEGAIERKLSYTGEVKARPA 294
Query: 338 AMYNFTEEELTKWDQLSLASAMGPASVELLAAGLDGYVNQARRVEDLFEKM 388
+ TE E W P +V+ LA G+ + ++E + +
Sbjct: 295 RI---TESEF-LWQH-----NQDPMAVDKLAEGIRKFAIDQEKLEKMIGDL 336
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE;
1.90A {Prochlorococcus marinus str}
Length = 334
Score = 268 bits (686), Expect = 1e-87
Identities = 102/339 (30%), Positives = 171/339 (50%), Gaps = 24/339 (7%)
Query: 56 GLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALA 115
G+ + L+ +SS + +V DT D ++F P AT + SL+L PD + +D A+
Sbjct: 1 GMKSILEQLSSMTVVVADTGDLDSIKKFQPRDATTNPSLILAAAKNPD--YVKLIDKAIE 58
Query: 116 DSSCCELE--NSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHD 173
S + + ++ V G ++ K++ GRVSTEVDARL++DT ++K
Sbjct: 59 SSENTLPNGFSEIELIKETVDQVSVFFGKEILKIISGRVSTEVDARLSFDTEATVKKARK 118
Query: 174 LLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASV 233
L+ LY + ER+L KI +TW+GI+A+ +LE EGI+ +LT +++F QA A A ++
Sbjct: 119 LINLYKNFGIEKERILIKIAATWEGIKAAEILEKEGIKCNLTLLFNFCQAVTCANANITL 178
Query: 234 IQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNK 293
I FVGR+ DW + +G A EDP + V++ Y Y + G K+++M A+ RN
Sbjct: 179 ISPFVGRILDWHKAKTGKTSFIGA----EDPGVISVTQIYKYFKEKGFKTEVMGASFRNL 234
Query: 294 QDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAM----YNFTEEELTK 349
++ L G D + K L+ LK K +R+L + Y F E++ +
Sbjct: 235 DEIKELAGCDLLTIAPKFLEELKRE------KGVLIRKLDASTKINNSIDYKFEEKDF-R 287
Query: 350 WDQLSLASAMGPASVELLAAGLDGYVNQARRVEDLFEKM 388
+ + E L+ G+ G+ +E+L +
Sbjct: 288 L-----SMLEDQMASEKLSEGITGFSKAIEELEELLIER 321
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1
PDB: 2cwn_A 1f05_A
Length = 331
Score = 263 bits (674), Expect = 5e-86
Identities = 104/340 (30%), Positives = 178/340 (52%), Gaps = 19/340 (5%)
Query: 51 SSLDAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAV 110
SS +G+ + LD + F+ +V DT F+ + + P AT + SL+L +P ++ V
Sbjct: 2 SSGSSGMESALDQLKQFTTVVADTGDFNAIDEYKPQDATTNPSLILAAAQMPA--YQELV 59
Query: 111 DMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRK 170
+ A+A E ++ +K V G ++ K +PGRVSTEVDARL++D ++ +
Sbjct: 60 EEAIAYGKK-LGGPQEEQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVAR 118
Query: 171 VHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQA 229
L++LY E V +R+L K+ STW+GI+A + LE + GI ++T ++SFAQA A A+A
Sbjct: 119 ARRLIELYKEAGVGKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAEA 178
Query: 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAA 289
G ++I FVGR+ DW ++ + DP + V+K YNY K+G+K+ +M A+
Sbjct: 179 GVTLISPFVGRILDWHVANTDKKSYEPQ----GDPGVKSVTKIYNYYKKFGYKTIVMGAS 234
Query: 290 VRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTK 349
RN ++ +L G D++ K+L L + LS ++A + E
Sbjct: 235 FRNTGEIKALAGCDFLTISPKLLGELLKD------NSKLAPALSVKAAQTSD---SEKIH 285
Query: 350 WDQLSLASAM--GPASVELLAAGLDGYVNQARRVEDLFEK 387
D+ + +VE L+ G+ + A ++E + +
Sbjct: 286 LDEKAFRWLHNEDQMAVEKLSDGIRKFAADAIKLERMLTE 325
>3tkf_A Transaldolase; structural genomics, center for structural genomics
of infec diseases, csgid, alpha-beta barrel/TIM barrel;
HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB:
3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Length = 345
Score = 261 bits (667), Expect = 9e-85
Identities = 88/356 (24%), Positives = 169/356 (47%), Gaps = 16/356 (4%)
Query: 33 HFNFRSSFPHIRASSSSSSSLDAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSS 92
H + SS + + S +A + L+ + + +V DT F+ +++ P AT +
Sbjct: 3 HHHHHSSGVDLGTENLYFQS-NAMQKSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNP 61
Query: 93 SLLLGICSLPDTIFRNAVDMALADSSCCELE-NSELRLSCFFNKALVNVGGDLAKMVPGR 151
SL+L + N V ++ + NS+ + + LV+ G + ++ G+
Sbjct: 62 SLILKAVKEQK--YSNLVAETISKVKANNPDLNSDDLVKEIAIEILVSFGIKILDVIEGK 119
Query: 152 VSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQ 211
VS+EVDAR+++++ I ++ Y +P +R+L I +TW+GI+A++LL+ EGI
Sbjct: 120 VSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAATWEGIKAAKLLQKEGIN 179
Query: 212 THLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271
+LT ++ AQA A A+AG ++ FVGR+ DW + +D ++ V
Sbjct: 180 CNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAI---ADDDGVNSVKA 236
Query: 272 AYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRR 331
Y +G K+ +M A+ RN + + +L G D + +L+ LK + K +
Sbjct: 237 IYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLTKNDD 296
Query: 332 LSPQSAAMYNFTEEELTKWDQLSLASAMGPASVELLAAGLDGYVNQARRVEDLFEK 387
+ QS + +E + +W +AM + LA G+ + +E++ ++
Sbjct: 297 VVTQSPQI---SEADF-RWLM--NENAM---ATHKLAEGIRLFTKDTIELENIIKQ 343
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt,
transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae}
Length = 339
Score = 260 bits (665), Expect = 2e-84
Identities = 105/350 (30%), Positives = 177/350 (50%), Gaps = 21/350 (6%)
Query: 39 SFPHIRASSSSSSSLDAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGI 98
S P + ++SSL+ L + +V D+ F+ ++ P +T + SL+L
Sbjct: 2 SEPSEKKQKVATSSLEQ-----LKKAGT--HVVADSGDFEAISKYEPQDSTTNPSLILAA 54
Query: 99 CSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDA 158
L + +D A+ + E ++ +K LV G + K+VPGRVSTEVDA
Sbjct: 55 SKLEK--YARFIDAAVEYGRKHGKTDHE-KIENAMDKILVEFGTQILKVVPGRVSTEVDA 111
Query: 159 RLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLES-EGIQTHLTFV 217
RL++D ++K ++KLY + VP ER+L KI STW+GI+A+R LE GI ++T +
Sbjct: 112 RLSFDKKATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARELEVKHGIHCNMTLL 171
Query: 218 YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277
+SF QA A A+A ++I FVGR+ D+ + SG + DP + V K Y+Y
Sbjct: 172 FSFTQAVACAEANVTLISPFVGRIMDFYKALSGKDYTAE-----TDPGVLSVKKIYSYYK 226
Query: 278 KYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSA 337
++G+ +++MAA+ RN +L +L G+D + PL +L+ L ES + K +
Sbjct: 227 RHGYATEVMAASFRNLDELKALAGIDNMTLPLNLLEQLYESTDPIENKLNSESAKEEGVE 286
Query: 338 AMYNFTEEELTKWDQLSLASAMGPASVELLAAGLDGYVNQARRVEDLFEK 387
+ +E ++ + M + E L+ G+ + + L E+
Sbjct: 287 KVSFINDEPHFRY--VLNEDQM---ATEKLSDGIRKFSADIEALYKLVEE 331
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente
structural genomics, JCSG, protein structure initiative,
PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Length = 352
Score = 116 bits (293), Expect = 8e-30
Identities = 57/355 (16%), Positives = 107/355 (30%), Gaps = 60/355 (16%)
Query: 54 DAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLP---DTIFRNAV 110
G LD + S + + + T + ++ +
Sbjct: 10 ALGQQIWLD---NLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALK 66
Query: 111 DMALADSSCCE-LENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIR 169
L+ E + +++R +C + + G VS EV LA D G +
Sbjct: 67 RQNLSPKQRYETMAVADVRAAC----DVCLAEHESTGGKTGFVSLEVSPELAKDAQGTVE 122
Query: 170 KVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229
+ +L++ I + K+P+T GI+A L S+GI +LT ++S AQ A A
Sbjct: 123 EAR---RLHAAIARK--NAMIKVPATDAGIDALETLVSDGISVNLTLLFSRAQTLKAYAA 177
Query: 230 G-----------------ASVIQIFVGRLRDW-----ARNHSGDPEIDDALKRGEDPALS 267
V F+ R+ G I A +D
Sbjct: 178 YARGIAKRLAAGQSVAHIQVVASFFISRVDSALDATLPDRLKGKTAIALAKAAYQDWEQY 237
Query: 268 LVSKAYNYIHKYGHKS--------KLMAAAVRNKQDLFSLLGVDYI-IAPLKVLQSLKES 318
+ + + G + A + + SL+GV + P L++ +
Sbjct: 238 FTAPEFAALEAQGANRVQLLWASTGVKNPAYPDTLYVDSLIGVHTVNTVPDATLKAFIDH 297
Query: 319 AISPDEKYSFVRRLSPQSAAMYNFTEEELTKWDQLSLASAMGPASVELLAAGLDG 373
+ L+ + E+ + + + L GL
Sbjct: 298 G-------TAKATLTESADEARARL-AEIAALG-IDVE-TLA---ARLQEDGLKQ 339
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold,
transferase; 2.10A {Corynebacterium glutamicum}
Length = 360
Score = 115 bits (289), Expect = 4e-29
Identities = 49/279 (17%), Positives = 92/279 (32%), Gaps = 51/279 (18%)
Query: 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEAS 202
+ + GRVS EVD R++ D + + +L++++D P ++ KIP+T + A
Sbjct: 96 ESSNGYDGRVSIEVDPRISADRDATLAQAK---ELWAKVDRP--NVMIKIPATPGSLPAI 150
Query: 203 RLLESEGIQTHLTFVYSFAQAAAAAQAG-----------------ASVIQIFVGRLRDWA 245
+EGI ++T ++S A+ A SV FV R+
Sbjct: 151 TDALAEGISVNVTLIFSVARYREVIAAFIEGIKQAAANGHDVSKIHSVASFFVSRVDVEI 210
Query: 246 RNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL----------------MAAA 289
D+AL ++ +AY + ++L A
Sbjct: 211 DKRLEAIGSDEALALRGKAGVANAQRAYAVYKELFDAAELPEGANTQRPLWASTGVKNPA 270
Query: 290 VRNKQDLFSLLGVDYI-IAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELT 348
+ L G + + P + ++ E + SAA + +L
Sbjct: 271 YAATLYVSELAGPNTVNTMPEGTIDAVLEQG-------NLHGDTLSNSAAEADAVFSQLE 323
Query: 349 KWDQLSLASAMGPASVELLAAGLDGYVNQARRVEDLFEK 387
+ L G+D +V + + E
Sbjct: 324 ALGV-----DLADVFQVLETEGVDKFVASWSELLESMEA 357
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics,
JOI for structural genomics, JCSG; HET: GOL; 2.40A
{Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 108 bits (272), Expect = 7e-28
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 29/175 (16%)
Query: 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEAS 202
++ +V G VS EV + D G++R+ +L ++ + + KIP T GI+A
Sbjct: 57 EICDLVKGPVSAEVVSL---DYEGMVREARELAQISEYVVI-------KIPMTPDGIKAV 106
Query: 203 RLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGE 262
+ L +EGI+T++T V+S AQA AA+AGA+ + FVGR+ D
Sbjct: 107 KTLSAEGIKTNVTLVFSPAQAILAAKAGATYVSPFVGRMDDL----------------SN 150
Query: 263 DPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315
D + ++ + + YG +++++AA++R+ + L+GVD + P VL+ L
Sbjct: 151 DG-MRMLGEIVEIYNNYGFETEIIAASIRHPMHVVEAALMGVDIVTMPFAVLEKL 204
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A
{Bacillus subtilis}
Length = 212
Score = 108 bits (271), Expect = 8e-28
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 29/175 (16%)
Query: 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEAS 202
++ +V G VS EV ++ +I + +L K+ I V KIP T G++A
Sbjct: 46 EITDVVKGSVSAEV---ISLKAEEMIEEGKELAKIAPNITV-------KIPMTSDGLKAV 95
Query: 203 RLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGE 262
R L GI+T++T +++ QA AA+AGA+ + F+GRL D G
Sbjct: 96 RALTDLGIKTNVTLIFNANQALLAARAGATYVSPFLGRLDDI----------------GH 139
Query: 263 DPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315
+ L L+S+ +G ++++AA++R+ Q + L G PLKV+ +L
Sbjct: 140 NG-LDLISEVKQIFDIHGLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVIHAL 193
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational
selection, domain swapping transferase; HET: I22; 1.65A
{Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A*
3s1w_A*
Length = 223
Score = 108 bits (271), Expect = 1e-27
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 29/175 (16%)
Query: 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEAS 202
++ K+V G VS EV + G++ + + L V KIP T G+ A
Sbjct: 48 EILKIVDGPVSVEVVST---KYEGMVEEARKIHGLGDNAVV-------KIPMTEDGLRAI 97
Query: 203 RLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGE 262
+ L SE I T+ T V++ QA AA+AG + + FVGRL D GE
Sbjct: 98 KTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDI----------------GE 141
Query: 263 DPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315
D + ++ + Y K++++ A++RN + ++G D + P VL+SL
Sbjct: 142 DG-MQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSL 195
>1wx0_A Transaldolase; structural genomics, riken structural
genomics/proteomics initiative, RSGI, transferas; 2.27A
{Thermus thermophilus HB8} SCOP: c.1.10.1
Length = 223
Score = 106 bits (266), Expect = 5e-27
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 29/175 (16%)
Query: 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEAS 202
+ + V G VS EV A + ++ + L ++ I V K+P+T +G++A
Sbjct: 54 AICETVGGPVSAEVTAL---EAEAMVAEGRRLAAIHPNIVV-------KLPTTEEGLKAC 103
Query: 203 RLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGE 262
+ L +EGI+ ++T ++S QA AA+AGAS + F+GR+ D
Sbjct: 104 KRLSAEGIKVNMTLIFSANQALLAARAGASYVSPFLGRVDDI----------------SW 147
Query: 263 DPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315
D L+ + I K++AA++R+ + + LLG D P V + L
Sbjct: 148 DG-GELLREIVEMIQVQDLPVKVIAASIRHPRHVTEAALLGADIATMPHAVFKQL 201
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain
swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Length = 220
Score = 95.0 bits (237), Expect = 6e-23
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 31/177 (17%)
Query: 143 DLAKMVP--GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIE 200
L + + GR+ +V A G++ L + ++I V K+P T +G+
Sbjct: 45 QLHEAMGGQGRLFAQVMAT---TAEGMVNDALKLRSIIADIVV-------KVPVTAEGLA 94
Query: 201 ASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKR 260
A ++L++EGI T T VY AQ +A AGA + +V R+
Sbjct: 95 AIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQ---------------- 138
Query: 261 GEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315
G + V+ + + + ++K++AA+ + + L G + I PL V Q +
Sbjct: 139 GGSG-IQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVAQQM 194
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 70/421 (16%), Positives = 120/421 (28%), Gaps = 151/421 (35%)
Query: 2 SISLRCPPSQALSSFSFQGRNSRLISTASDVHFNF---RSSFPHIRASSSSSSSLDAGLS 58
+ S R P + LS S + L+ TAS F + F I + + D +
Sbjct: 3 AYSTR-PLT--LSHGSL--EHVLLVPTAS--FFIASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 59 TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSS 118
T + V F V V P+ +L + L
Sbjct: 56 TPAELVGKFLGYVSSLV--------EPSKVGQFDQVLN---------------LCL---- 88
Query: 119 CCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLY 178
E EN L G D+ + A+L + + K +L+K Y
Sbjct: 89 -TEFENCYLE------------GNDIHALA---------AKLLQENDTTLVKTKELIKNY 126
Query: 179 SEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAG-ASVIQIF 237
R++ K P S L A G A ++ IF
Sbjct: 127 ITA-----RIMAKRPFD--KKSNSALFR-------------------AVGEGNAQLVAIF 160
Query: 238 VGR---------LRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAA 288
G+ LRD + + D +K + L+ + +
Sbjct: 161 GGQGNTDDYFEELRD--LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ------- 211
Query: 289 AVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKY------SFVRRLSPQ----SAA 338
G++ +L+ L+ + +PD+ Y S P A
Sbjct: 212 ------------GLN-------ILEWLENPSNTPDKDYLLSIPISC-----PLIGVIQLA 247
Query: 339 MY-------NFTEEELTKWDQLSLASAMGPASVELLAAGLDG---YVNQARRVEDLFEKM 388
Y FT EL + + + + G + +A +V+ + + LF
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF--- 304
Query: 389 W 389
+
Sbjct: 305 F 305
Score = 36.2 bits (83), Expect = 0.020
Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 96/242 (39%)
Query: 11 QALSSFSFQGRNSRL---------ISTASDVHFNFRSSFPHIRAS-SSSSSSLDAGLST- 59
+ +S++F+ L ++ +++F +++ + + AG S
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPALTLME------KAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 60 ELDAVSSFSEIVPDTVVFDD-----FER------FPPTAATVSSSLLLGICSL-PDTI-- 105
E A++S ++++ + F R P S+ G+ ++ P +
Sbjct: 1766 EYAALASLADVMS----IESLVEVVFYRGMTMQVAVPRDELGRSN--YGMIAINPGRVAA 1819
Query: 106 ------FRNAVDMALADSSC-CELENSELRLSCFFNKALVNVGGDLAKMVPGR---VSTE 155
+ V+ + E+ N +N V + + +
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVN--------YN-------------VENQQYVAAGD 1858
Query: 156 VDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLES---EGIQT 212
+ A + V ++L K+ Q I+ L +S E ++
Sbjct: 1859 LRA---------LDTVTNVLN------------FIKL----QKIDIIELQKSLSLEEVEG 1893
Query: 213 HL 214
HL
Sbjct: 1894 HL 1895
Score = 35.8 bits (82), Expect = 0.024
Identities = 43/286 (15%), Positives = 82/286 (28%), Gaps = 114/286 (39%)
Query: 109 AVDMALADSSCCEL-ENSEL-RLSCFFNKA----LVNVGGDLAKMV---P---------- 149
M + +L + S+ + +N+A G + +V P
Sbjct: 1628 EQGMGM------DLYKTSKAAQ--DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 150 -GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-----TW--Q---- 197
G+ E + + ++T + + K++ EI+ F+ T Q
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTE--KIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 198 --GIEASRLLESEGIQTHLTFV-------YSFAQAAAAAQAGA----SVIQIFV---GRL 241
A L+S+G+ Y+ A A+ A S++++ V G
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYA----ALASLADVMSIESLVEV-VFYRGMT 1792
Query: 242 RDWA--RNHSG---------DPEI------DDALKR------------------------ 260
A R+ G +P +AL+
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 261 ----GEDPALSLVSKAYNYIHKYGHKSKLMAAAV-----RNKQDLF 297
G+ AL V+ N+I K ++ + LF
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKL--QKIDIIELQKSLSLEEVEGHLF 1896
Score = 32.7 bits (74), Expect = 0.29
Identities = 30/151 (19%), Positives = 43/151 (28%), Gaps = 55/151 (36%)
Query: 2 SISLRC---------PPSQALSSFSFQGRNSRLISTASD---VHF-----NFRSSF---- 40
ISL PP Q+L + R ++ + D + F F + F
Sbjct: 367 EISLVNGAKNLVVSGPP-QSLYGLNLTLRKAK-APSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 41 -P-HIRASSSSSSSL--DAGLSTELDAVSSFSEI------VPDTVVFDDFERFPPTAA-- 88
P H S L A D V + +P V+D F +
Sbjct: 425 SPFH--------SHLLVPASDLINKDLVKNNVSFNAKDIQIP---VYDTF-----DGSDL 468
Query: 89 -TVSSSLLLGICSLPDTIFRNAVDMALADSS 118
+S S+ I D I R V
Sbjct: 469 RVLSGSISERIV---DCIIRLPVKWETTTQF 496
Score = 30.8 bits (69), Expect = 1.1
Identities = 43/251 (17%), Positives = 66/251 (26%), Gaps = 110/251 (43%)
Query: 162 YDTHGIIRKV------HDLLKL-YSEIDV----PPE-RLLFKIPSTWQGIEASRLLESEG 209
Y T + V H +S +D+ P + F G + R+ E+
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG------GEKGKRIREN-- 1687
Query: 210 IQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK----RGED-- 263
YS +IF EI++ R E
Sbjct: 1688 --------YSAMIFETIVDGKLKTEKIF--------------KEINEHSTSYTFRSEKGL 1725
Query: 264 --------PALSLVSKA-YNYIHKY----------GHKS--------------------- 283
PAL+L+ KA + + GH S
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH-SLGEYAALASLADVMSIESLVE 1784
Query: 284 ------KLMAAAVRNKQDLFSLLGVDYIIA--PLKVLQSLKESAISPDEKYSFVRRLSPQ 335
M AV + S G +IA P +V S + A+ V R+ +
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYG---MIAINPGRVAASFSQEALQ-----YVVERVGKR 1836
Query: 336 S-----AAMYN 341
+ YN
Sbjct: 1837 TGWLVEIVNYN 1847
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 8e-04
Identities = 44/252 (17%), Positives = 67/252 (26%), Gaps = 63/252 (25%)
Query: 168 IRKVHDLLK-LYS--EID----VPPE----RLLFKIPSTWQGIEASRLLESEGIQTHLTF 216
+ V D+ K + S EID LF W L S+ + F
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-----W-------TLLSKQEEMVQKF 82
Query: 217 V-------YSFAQAAAAAQA-GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSL 268
V Y F + + S++ RD N + R P L L
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSR-LQPYLKL 140
Query: 269 VSKAYN-----YIHKYGH----KSKLMAAAVRNK--QDLFSL----LGVDYIIAP---LK 310
+ G K+ + + Q L + +P L+
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 311 VLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTKWDQLSLASAMGPASVELLAAG 370
+LQ L I P+ + R S + + L S LL
Sbjct: 201 MLQKLL-YQIDPN----WTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENC--LLV-- 249
Query: 371 LDGYVNQARRVE 382
L V A+
Sbjct: 250 LLN-VQNAKAWN 260
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.021
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 168 IRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIE 200
++K+ LKLY++ D P I +T +E
Sbjct: 22 LKKLQASLKLYAD-DSAPA---LAIKAT---ME 47
Score = 28.0 bits (61), Expect = 3.8
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 16/39 (41%)
Query: 234 IQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKA 272
++ L+ +A D A PAL++ KA
Sbjct: 22 LKKLQASLKLYA------D--DSA------PALAI--KA 44
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido;
HET: PCF; 2.65A {Pseudomonas putida}
Length = 311
Score = 32.8 bits (74), Expect = 0.19
Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 7/123 (5%)
Query: 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPE---RLLFKIPSTWQGI 199
V G E R +++ L++ ++++ + + +
Sbjct: 13 AFFNQVAGLDHAEGKPRFKQIILRVLQDTARLIE---DLEITEDEFWHAVDYLNRLGGRN 69
Query: 200 EASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259
EA L GI H + A+ A A G + I A G+ +DD
Sbjct: 70 EAGLLAAGLGI-EHFLDLLQDAKDAEAGLGGGTPRTIEGPLYVAGAPLAQGEVRMDDGTD 128
Query: 260 RGE 262
G
Sbjct: 129 PGV 131
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 30.1 bits (68), Expect = 1.3
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 187 RLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAA 226
R F + S + + L+++ I+ + + F++ A
Sbjct: 318 RWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEA 357
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY
diffraction, structural genomics, NPPSFA; 1.90A {Aquifex
aeolicus}
Length = 338
Score = 29.8 bits (68), Expect = 1.5
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 22/85 (25%)
Query: 187 RLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIF---VGRL-- 241
+++ P ++ RL++ I T Y Q A GA V+QIF V L
Sbjct: 161 LFMWENPKEYK-----RLMD---ILTETVLAYLKEQIKA----GADVVQIFDSWVNNLSL 208
Query: 242 ---RDWARNHSGDPEIDDALKRGED 263
++ + + LK D
Sbjct: 209 EDYGEYVYPYVN--YLISELKDFSD 231
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 29.8 bits (68), Expect = 1.6
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 214 LTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPAL 266
A A Q+G+ IF+G L +S P I+D + PA
Sbjct: 105 AVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAF 157
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein,
structural genomics, center for structural genomics,
JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Length = 275
Score = 29.2 bits (65), Expect = 1.9
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 221 AQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEI 254
AA +AGA+++ + V R+ + +P+
Sbjct: 34 ESTQAAFEAGATLVHLHV---RNDDETPTSNPDR 64
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD,
RCK domain, potassium transport, potassium channel,
KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii}
SCOP: c.2.1.9
Length = 140
Score = 28.7 bits (65), Expect = 2.0
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 277 HKYGHKSKLMAAAVRNKQ--DLFSLLGVDYIIAP 308
YG + A + + D+F LGVD +++P
Sbjct: 91 KSYGINKTI--ARISEIEYKDVFERLGVDVVVSP 122
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM
barrel fold, structural genomics, joint center for struc
genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3}
PDB: 3fa5_A
Length = 284
Score = 29.2 bits (65), Expect = 2.1
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 221 AQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEI 254
A +AGA++ V R+ S DP+
Sbjct: 38 ESTQEAFEAGAAIAHCHV---RNDDGTPSSDPDR 68
>3lot_A Uncharacterized protein; protein of unknown function, structural
genomics, joint CENT structural genomics, JCSG; HET:
MSE; 1.89A {Archaeoglobus fulgidus}
Length = 314
Score = 29.3 bits (65), Expect = 2.3
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 221 AQAAAAAQAGASVIQIFVGRLRDWA-RNHSGDPEI 254
+A AA+AGA ++ I RD + D E+
Sbjct: 36 EEAVKAAEAGAGMVHIHA---RDPKDGRPTTDVEV 67
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 29.1 bits (66), Expect = 2.3
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 197 QGIEASRLLESEGIQTHLTFVYSFAQAAAA 226
QG L+ ++ ++ F Q A
Sbjct: 269 QGEALLTLIAQGKMEIAAPDIFRFEQMIEA 298
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum
cofactor, structural genomics, center for structural
genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm
1728}
Length = 136
Score = 28.4 bits (63), Expect = 2.4
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 355 LASAMGPASVELLAAGLDGYVNQARRVEDLFEK 387
+ S +G + +D Y+ V D +
Sbjct: 84 VLSEIGSPGFNFIKNKMDVYIVPEMPVADALKL 116
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 29.2 bits (65), Expect = 2.6
Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 19/100 (19%)
Query: 189 LFKIPSTWQGI-----EASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRD 243
+ IP ++ G+ + +SEG+ T + ++ + + +L +
Sbjct: 454 VIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKITS-------------KLEE 500
Query: 244 WARNHSGDPEIDDALKRG-EDPALSLVSKAYNYIHKYGHK 282
+++ + ++ + R D L + A I
Sbjct: 501 AFVSNTTEFKVKVPIVRSLSDINLKIDDIALKQIMSKNKV 540
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair,
TIM barrel, DNA DA endonuclease, hydrolase,
metal-binding; 1.60A {Geobacillus kaustophilus} PDB:
1xp3_A
Length = 303
Score = 29.0 bits (65), Expect = 2.9
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 226 AAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL 285
AA GA+ I+ G ++ R I++ A +A+ H +
Sbjct: 27 AASYGANTFMIYTGAPQNTKR-----KSIEEL----NIEAGRQHMQAHGIEEIVVHAPYI 77
Query: 286 MAAAVRNKQDLF 297
+ D F
Sbjct: 78 INIGNTTNLDTF 89
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural
genomics, joint center for structural genomics; HET:
MSE; 1.75A {Burkholderia xenovorans LB400}
Length = 311
Score = 29.0 bits (64), Expect = 3.1
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 221 AQAAAAAQAGASVIQIFVGRLRDWA-RNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKY 279
+ AA+AGA+VI + RD + DP V +
Sbjct: 36 QASIGAAEAGAAVIHLHA---RDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLTTGGSPH 92
Query: 280 GHKSKLMAAAVRNKQDLFSL 299
+ + A +L SL
Sbjct: 93 MTVEERLRPATHYMPELASL 112
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A
{Candidatus cloacamonas acidaminovoransorganism_taxid}
PDB: 2y7d_A 2y7f_A* 2y7g_A
Length = 282
Score = 28.8 bits (64), Expect = 3.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 221 AQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEI 254
+A A +AGA VI + + R+ S +
Sbjct: 38 KEAKACFEAGARVIHLHI---REDDGRPSQRLDR 68
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.8 bits (64), Expect = 3.8
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 189 LFKIPSTWQGI-----EASRLLESEGIQTHLTFVYSFAQAAAA 226
+ IP ++ G+ + +SEG+ T + ++ + +
Sbjct: 454 VIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKITS 496
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 28.3 bits (64), Expect = 4.5
Identities = 3/27 (11%), Positives = 14/27 (51%)
Query: 200 EASRLLESEGIQTHLTFVYSFAQAAAA 226
+L+ + ++ ++ ++ ++A A
Sbjct: 277 YLGKLVSEDKLRIEISRIFQLSEAVTA 303
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 28.4 bits (63), Expect = 4.9
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 189 LFKIPSTWQGI-----EASRLLESEGIQTHLTFVYSFAQAAAA 226
+ IP ++ G+ + +SEG+ T + ++ + +
Sbjct: 454 VIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKITS 496
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Length = 311
Score = 28.2 bits (62), Expect = 5.1
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 221 AQAAAAAQAGASVIQIFVGRLRDWA-RNHSGDPEI 254
+ AAA+AGA+++ + RD S DP++
Sbjct: 36 KEGVAAAEAGAAMLHLHA---RDPLNGRPSQDPDL 67
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM
beta/alpha-barrel fold, structura genomics; HET: MSE;
1.72A {Ralstonia eutropha}
Length = 316
Score = 28.2 bits (62), Expect = 5.1
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 221 AQAAAAAQAGASVIQIFVGRLRDWAR-NHSGDPEI 254
AA+AGASV I V RD S DP +
Sbjct: 52 DACVEAAKAGASVAHIHV---RDPKTGGGSRDPVL 83
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel,
cytoplasm, lyase, porphyrin biosynthesis; 2.80A
{Shigella flexneri}
Length = 354
Score = 28.2 bits (64), Expect = 5.3
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 22/82 (26%)
Query: 187 RLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIF---VGRL-- 241
++++ P LL+ +Y AQ A GA + IF G L
Sbjct: 169 KMMYADPQALH-----ALLD---KLAKSVTLYLNAQIKA----GAQAVMIFDTWGGVLTG 216
Query: 242 ---RDWARNHSGDPEIDDALKR 260
+ ++ + +I D L R
Sbjct: 217 RDYQQFSLYYMH--KIVDGLLR 236
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3
turn-helix, hydrophobic wedge, 3' FLA site,
hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus}
SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Length = 336
Score = 28.3 bits (63), Expect = 5.3
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 255 DDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAP 308
+A + + A Y G + + + + L S +G+ ++ AP
Sbjct: 99 AEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSA---KTLLSYMGIPFVDAP 149
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus
amylolyticus}
Length = 363
Score = 27.9 bits (62), Expect = 5.4
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 270 SKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAP 308
A Y ++ M + L +G+ ++ AP
Sbjct: 129 ELARRYAMMSAKLTEEMVRDA---KSLLDAMGIPWVQAP 164
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial
enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana
tabacum} SCOP: c.1.22.1
Length = 353
Score = 27.9 bits (63), Expect = 5.4
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 22/85 (25%)
Query: 187 RLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIF---VGRL-- 241
RL F P LL+ Y QA + GA +QIF L
Sbjct: 175 RLAFAEPKVLH-----ALLQ---KFATSMAKYIRYQADS----GAQAVQIFDSWATELSP 222
Query: 242 ---RDWARNHSGDPEIDDALKRGED 263
+++ + +I D++K
Sbjct: 223 VDFEEFSLPYLK--QIVDSVKLTHP 245
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM
barrel, endonucle hydrolase, structural genomics,
NPPSFA; 1.58A {Thermus thermophilus}
Length = 270
Score = 27.8 bits (62), Expect = 5.5
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 9/61 (14%)
Query: 223 AAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282
A G + QIF R W + A E A + +A + H
Sbjct: 20 VEEATALGLTAFQIFAKSPRSWRP-----RALSPA----EVEAFRALREASGGLPAVIHA 70
Query: 283 S 283
S
Sbjct: 71 S 71
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase,
transferase; HET: RIB ADP; 1.98A {Mycobacterium
tuberculosis} PDB: 3go7_A*
Length = 310
Score = 27.9 bits (63), Expect = 6.1
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 222 QAAAAAQAGASVIQIFVGRL 241
QA AAA+AGA V F G
Sbjct: 62 QAVAAARAGAQV--QFSGAF 79
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme
biosynthesis, structural GENO niaid; 1.65A {Burkholderia
thailandensis}
Length = 368
Score = 27.9 bits (63), Expect = 6.2
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 22/82 (26%)
Query: 187 RLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIF---VGRL-- 241
+ + P R+L+ + Y AQ A GA + IF G L
Sbjct: 179 SMAYARPDLMH-----RILD---VNAQAVAAYLNAQIEA----GAQAVMIFDTWGGALAD 226
Query: 242 ---RDWARNHSGDPEIDDALKR 260
+ ++ ++ + LKR
Sbjct: 227 GAYQRFSLDYIR--RVVAQLKR 246
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural
genomics, J center for structural genomics, JCSG; HET:
MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Length = 286
Score = 27.6 bits (61), Expect = 6.2
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 199 IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDAL 258
+E + T +V+S A A A+AGA ++ +G A +DD +
Sbjct: 153 VEMIAEAHKLDLLT-TPYVFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCV 211
Query: 259 KRGED 263
+
Sbjct: 212 SLINE 216
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 28.0 bits (62), Expect = 6.4
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 189 LFKIPSTWQGI-----EASRLLESEGIQTHLTFVYSFAQAAAA 226
+ IP ++ G+ + +SEG+ T + ++ + +
Sbjct: 454 VIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKITS 496
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel,
eight parallel beta strands surrounded by eight alpha
helices, lyase; 2.30A {Bacillus subtilis}
Length = 359
Score = 27.9 bits (63), Expect = 7.0
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 22/82 (26%)
Query: 187 RLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIF---VGRL-- 241
++ +P W L+ + VY AQ A GA IQIF VG L
Sbjct: 175 AFMYSMPDAWN-----LLMS---KLADMIIVYVKAQIKA----GAKAIQIFDSWVGALNQ 222
Query: 242 ---RDWARNHSGDPEIDDALKR 260
R + + I L +
Sbjct: 223 ADYRTYIKPVMN--RIFSELAK 242
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn
cluster, hydrolase; 1.02A {Escherichia coli} SCOP:
c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Length = 285
Score = 27.5 bits (61), Expect = 7.2
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 213 HLTFVYSFAQAAA-AAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGE 262
H++ A AA AA+ A+ +F R W ID+ E
Sbjct: 7 HVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACE 57
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding,
transferase; HET: RIB ADP; 1.84A {Escherichia coli}
SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Length = 309
Score = 27.4 bits (62), Expect = 7.7
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 222 QAAAAAQAGASVIQIFVGRL 241
QA AA ++GA++ F+
Sbjct: 47 QAVAAGRSGANI--AFIACT 64
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site,
structura genomics, PSI-2, protein structu initiative;
HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Length = 343
Score = 27.6 bits (62), Expect = 8.0
Identities = 4/20 (20%), Positives = 6/20 (30%), Gaps = 2/20 (10%)
Query: 222 QAAAAAQAGASVIQIFVGRL 241
A A + G G +
Sbjct: 72 AAYAVHRMGGRA--SLWGAV 89
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 27.4 bits (62), Expect = 8.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 355 LASAMGPASVELLAAGLDGYV 375
LAS +G +VELL G G
Sbjct: 263 LASRLGAYAVELLLEGKGGRC 283
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 27.4 bits (62), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 355 LASAMGPASVELLAAGLDGYV 375
LAS MG +++LL AG G
Sbjct: 264 LASRMGAYAIDLLLAGYGGRC 284
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double
helix, restriction endonuclease, restriction-modifiction
systems, hydrolase; HET: DNA; 1.60A {Neisseria
gonorrhoeae} SCOP: c.52.1.10 PDB: 4abt_A
Length = 286
Score = 27.4 bits (60), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 279 YGHKSKLMAAAVRNKQDLFSLLGVDYIIAP 308
Y H + L A A +L + LG DY I P
Sbjct: 111 YAHLTAL-AKAAEENPELAAALGSDYTITP 139
>2fv7_A Ribokinase; structural genomics, structural genomics consort
transferase; HET: ADP; 2.10A {Homo sapiens} SCOP:
c.72.1.1
Length = 331
Score = 27.1 bits (61), Expect = 9.4
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 222 QAAAAAQAGASVIQIFVGRL 241
Q AA+ GA V ++
Sbjct: 67 QCVQAARLGAMT--SMVCKV 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.379
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,064,733
Number of extensions: 369493
Number of successful extensions: 1238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1203
Number of HSP's successfully gapped: 72
Length of query: 394
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,021,377
Effective search space: 1198370346
Effective search space used: 1198370346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)