RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016178
(394 letters)
>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]}
Length = 316
Score = 214 bits (547), Expect = 1e-67
Identities = 108/330 (32%), Positives = 180/330 (54%), Gaps = 16/330 (4%)
Query: 58 STELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADS 117
+ +L ++ ++ +V DT + + P AT + SL+L +P+ +R +D A+A +
Sbjct: 1 TDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPE--YRKLIDDAVAWA 58
Query: 118 SCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKL 177
+ + ++ +K VN+G ++ K+VPGR+STEVDARL+YDT I K L+KL
Sbjct: 59 KQ-QSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKL 117
Query: 178 YSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIF 237
Y++ + +R+L K+ STWQGI A+ LE EGI +LT ++SFAQA A A+AG +I F
Sbjct: 118 YNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF 177
Query: 238 VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF 297
VGR+ DW + ++ E A EDP + VS+ Y Y ++G+++ +M A+ RN ++
Sbjct: 178 VGRILDWYKANTDKKEYAPA----EDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEIL 233
Query: 298 SLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTKWDQLSLAS 357
L G D + +L+ L ES + + K S+ + + A + TE E W
Sbjct: 234 ELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPARI---TESEF-LWQH----- 284
Query: 358 AMGPASVELLAAGLDGYVNQARRVEDLFEK 387
P +V+ LA G+ + ++E +
Sbjct: 285 NQDPMAVDKLAEGIRKFAIDQEKLEKMIGD 314
>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 319
Score = 204 bits (519), Expect = 2e-63
Identities = 101/332 (30%), Positives = 173/332 (52%), Gaps = 19/332 (5%)
Query: 59 TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSS 118
+ LD + F+ +V DT F+ + + P AT + SL+L +P ++ V+ A+A
Sbjct: 1 SALDQLKQFTTVVADTGDFNAIDEYKPQDATTNPSLILAAAQMPA--YQELVEEAIAYGK 58
Query: 119 CCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLY 178
E + +K V G ++ K +PGRVSTEVDARL++D ++ + L++LY
Sbjct: 59 KLGGPQEEQ-IKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIELY 117
Query: 179 SEIDVPPERLLFKIPSTWQGIEASR-LLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIF 237
E V +R+L K+ STW+GI+A + L E GI ++T ++SFAQA A A+AG ++I F
Sbjct: 118 KEAGVGKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAEAGVTLISPF 177
Query: 238 VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF 297
VGR+ DW ++ + + DP + V+K YNY K+G+K+ +M A+ RN ++
Sbjct: 178 VGRILDWHVANTD----KKSYEPQGDPGVKSVTKIYNYYKKFGYKTIVMGASFRNTGEIK 233
Query: 298 SLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTKWDQLSLAS 357
+L G D++ K+L L + LS ++A ++ E D+ +
Sbjct: 234 ALAGCDFLTISPKLLGELLKD------NSKLAPALSVKAAQ---TSDSEKIHLDEKAFRW 284
Query: 358 AM--GPASVELLAAGLDGYVNQARRVEDLFEK 387
+VE L+ G+ + A ++E + +
Sbjct: 285 LHNEDQMAVEKLSDGIRKFAADAIKLERMLTE 316
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermus thermophilus [TaxId:
274]}
Length = 211
Score = 87.9 bits (217), Expect = 6e-21
Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 29/175 (16%)
Query: 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEAS 202
+ + V G VS EV A + ++ + L ++ ++ K+P+T +G++A
Sbjct: 54 AICETVGGPVSAEVTA---LEAEAMVAEGRRLAAIH-------PNIVVKLPTTEEGLKAC 103
Query: 203 RLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGE 262
+ L +EGI+ ++T ++S QA AA+AGAS + F+GR+ D + +
Sbjct: 104 KRLSAEGIKVNMTLIFSANQALLAARAGASYVSPFLGRVDDISWDG-------------- 149
Query: 263 DPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF--SLLGVDYIIAPLKVLQSL 315
L+ + I K++AA++R+ + + +LLG D P V + L
Sbjct: 150 ---GELLREIVEMIQVQDLPVKVIAASIRHPRHVTEAALLGADIATMPHAVFKQL 201
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermotoga maritima [TaxId:
2336]}
Length = 218
Score = 77.5 bits (190), Expect = 4e-17
Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 178 YSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIF 237
E+ E ++ KIP T GI+A + L +EGI+T++T V+S AQA AA+AGA+ + F
Sbjct: 72 ARELAQISEYVVIKIPMTPDGIKAVKTLSAEGIKTNVTLVFSPAQAILAAKAGATYVSPF 131
Query: 238 VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF 297
VGR+ D + + ++ + + YG +++++AA++R+ +
Sbjct: 132 VGRMDDLSNDGMR-----------------MLGEIVEIYNNYGFETEIIAASIRHPMHVV 174
Query: 298 --SLLGVDYIIAPLKVLQSLKE 317
+L+GVD + P VL+ L +
Sbjct: 175 EAALMGVDIVTMPFAVLEKLFK 196
>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Escherichia coli [TaxId: 562]}
Length = 220
Score = 66.4 bits (161), Expect = 3e-13
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 29/169 (17%)
Query: 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE 208
GR+ +V A A L + ++I + K+P T +G+ A ++L++E
Sbjct: 53 QGRLFAQVMATTAEGMV---NDALKLRSIIADI-------VVKVPVTAEGLAAIKMLKAE 102
Query: 209 GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSL 268
GI T T VY AQ +A AGA + +V R+ +
Sbjct: 103 GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQ-----------------GGSGIQT 145
Query: 269 VSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315
V+ + + + ++K++AA+ + + L G + I PL V Q +
Sbjct: 146 VTDLHQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVAQQM 194
>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId:
562]}
Length = 285
Score = 34.1 bits (77), Expect = 0.020
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 210 IQTHLTFVYSFAQAAA-AAQAGASVIQIFVGRLRDWARNHSGDPEID---DALKRGEDPA 265
I H++ A AA AA+ A+ +F R W ID A ++ +
Sbjct: 4 IGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTS 63
Query: 266 LSLVSKA---YNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYII 306
++ N H + A ++ LG+ +
Sbjct: 64 AQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLN 107
>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis
[TaxId: 1392]}
Length = 297
Score = 29.0 bits (64), Expect = 0.91
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 226 AAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276
A GA+ I+ G ++ R + I+ K E + + YI
Sbjct: 22 AVSYGATTFMIYTGAPQNTRRKPIEELNIEAGRKHMEQNGIEEIIIHAPYI 72
>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 106
Score = 27.5 bits (61), Expect = 1.1
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 301 GVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEELTK 349
G D++ K L LK ++ +K +R+L+ F ++TK
Sbjct: 60 GYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEV----FRVHKVTK 104
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 286
Score = 28.0 bits (62), Expect = 1.7
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 278 KYGHKSKLMAAAVRNKQDLFSLLGVDYIIAP--LKVLQSLKESAISPDE--------KYS 327
+Y H + L AA N + L + LG DY I P + + ++ I+ +E Y+
Sbjct: 110 QYAHLTALAKAAEENPE-LAAALGSDYTITPDIIVTRNLIADAEINRNEFLVDENIATYA 168
Query: 328 FVRRL 332
+R
Sbjct: 169 SLRAG 173
>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria
monocytogenes [TaxId: 1639]}
Length = 275
Score = 28.1 bits (61), Expect = 1.9
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 219 SFAQA-AAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277
SF + AA+ G I + D D ++ L +
Sbjct: 16 SFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVE--YITQWG 73
Query: 278 KYGHKSKLMAAAVRNKQDLFSLLGVDYIIAP 308
++ + + L GV +I
Sbjct: 74 TAEDRTAEQQKKEQTTFHMARLFGVKHINCG 104
>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29,
C-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 106
Score = 25.5 bits (56), Expect = 5.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 301 GVDYIIAPLKVLQSLKESAISPDEKYSFVRRL 332
G D+ + L + L E+ +S +K R L
Sbjct: 59 GEDFPASELARISKLIENKMSEGKKEELQRSL 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.379
Gapped
Lambda K H
0.267 0.0420 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,426,324
Number of extensions: 64637
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 12
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)