Your job contains 1 sequence.
>016179
MGLFALQWQRRNMSASSRSRSVIEGAIKDGELRVFIVAGEVSGDSIGSRLMSAMKKLAPL
PVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAV
VTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILC
ILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGA
TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV
PSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAK
IPYISLPNILLDSPIIPEALLQACTPDTLTHLLM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016179
(394 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P10441 - symbol:lpxB species:83333 "Escherichia... 217 1.9e-31 2
TIGR_CMR|SO_1642 - symbol:SO_1642 "lipid A disaccharide s... 220 1.5e-30 2
TIGR_CMR|SPO_1675 - symbol:SPO_1675 "lipid-A-disaccharide... 329 1.0e-29 1
UNIPROTKB|Q9KPW5 - symbol:lpxB "Lipid-A-disaccharide synt... 191 2.3e-27 2
TIGR_CMR|VC_2247 - symbol:VC_2247 "lipid-A-disaccharide s... 191 2.3e-27 2
TIGR_CMR|CBU_0620 - symbol:CBU_0620 "lipid A disaccharide... 240 1.8e-18 1
TIGR_CMR|CPS_1568 - symbol:CPS_1568 "lipid-A-disaccharide... 241 1.8e-18 1
TIGR_CMR|GSU_2261 - symbol:GSU_2261 "lipid A disaccharide... 235 9.2e-18 1
TIGR_CMR|CJE_0336 - symbol:CJE_0336 "lipid-A-disaccharide... 148 4.8e-17 2
>UNIPROTKB|P10441 [details] [associations]
symbol:lpxB species:83333 "Escherichia coli K-12"
[GO:0019897 "extrinsic to plasma membrane" evidence=IDA]
[GO:0005543 "phospholipid binding" evidence=IDA] [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=IEA;IDA]
[GO:0009245 "lipid A biosynthetic process" evidence=IEA;IEP;IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003835
Pfam:PF02684 GO:GO:0005543 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0019897
EMBL:U70214 EMBL:M19334 GO:GO:0009245 UniPathway:UPA00359 CAZy:GT19
eggNOG:COG0763 KO:K00748 GO:GO:0008915 HAMAP:MF_00392
TIGRFAMs:TIGR00215 HOGENOM:HOG000018003 OMA:PTVWAWR
ProtClustDB:PRK00025 PIR:F64742 RefSeq:NP_414724.1
RefSeq:YP_488484.1 ProteinModelPortal:P10441 DIP:DIP-10122N
IntAct:P10441 MINT:MINT-1246245 PaxDb:P10441 PRIDE:P10441
DNASU:944838 EnsemblBacteria:EBESCT00000000116
EnsemblBacteria:EBESCT00000014561 GeneID:12931876 GeneID:944838
KEGG:ecj:Y75_p0178 KEGG:eco:b0182 PATRIC:32115475 EchoBASE:EB0541
EcoGene:EG10546 BioCyc:EcoCyc:LIPIDADISACCHARIDESYNTH-MONOMER
BioCyc:ECOL316407:JW0177-MONOMER
BioCyc:MetaCyc:LIPIDADISACCHARIDESYNTH-MONOMER
Genevestigator:P10441 Uniprot:P10441
Length = 382
Score = 217 (81.4 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 54/159 (33%), Positives = 80/159 (50%)
Query: 236 VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLI 295
+P A ++LLPGSR EV + F KT +LL+ ++P+L V+ + + E +
Sbjct: 187 IPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQFERIKA 246
Query: 296 QKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFI 355
+ P S+ + G +A AS AL SGT A+E LA+ P VV YR T W
Sbjct: 247 EVAPDLSVHLLDGMGR---EAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLA 303
Query: 356 RYKAKIPYISLPNILLDSPIIPEALLQACTPDTLTHLLM 394
+ K Y+SLPN+L ++ E L + C P L L+
Sbjct: 304 KRLVKTDYVSLPNLLAGRELVKELLQEECEPQKLAAALL 342
Score = 187 (70.9 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 55/184 (29%), Positives = 89/184 (48%)
Query: 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPXXXXXXXXXXXXEQGMKSLFPMEDIAVMGI 91
L + +VAGE SGD +G+ L+ A+K+ P E G ++ + ME++AVMGI
Sbjct: 7 LTIALVAGETSGDILGAGLIRALKEHVPNARFVGVAGPRMQAE-GCEAWYEMEELAVMGI 65
Query: 92 WELLPHIYKF-RVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAH 150
E+L + + +R T L +P V +D+ F+ L L+ + G
Sbjct: 66 VEVLGRLRRLLHIRADLTKRFGEL-KPDVFVGIDAPDFNITLEGNLKKQ-------GIKT 117
Query: 151 FHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLEL 210
HYV+PS WAW+ + R+ + D +L LP E+A + F+GH + D + L
Sbjct: 118 IHYVSPSVWAWR--QKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMA-DAMPL 174
Query: 211 NLGK 214
+ K
Sbjct: 175 DPDK 178
>TIGR_CMR|SO_1642 [details] [associations]
symbol:SO_1642 "lipid A disaccharide synthase"
species:211586 "Shewanella oneidensis MR-1" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0009245
UniPathway:UPA00359 eggNOG:COG0763 KO:K00748 GO:GO:0008915
HAMAP:MF_00392 TIGRFAMs:TIGR00215 HOGENOM:HOG000018003 OMA:PTVWAWR
ProtClustDB:PRK00025 RefSeq:NP_717253.1 ProteinModelPortal:Q8EGG2
GeneID:1169436 KEGG:son:SO_1642 PATRIC:23522918 Uniprot:Q8EGG2
Length = 385
Score = 220 (82.5 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 64/199 (32%), Positives = 102/199 (51%)
Query: 28 KDGELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPXXXXXXXXXXXXEQGMKSLFPMEDIA 87
K +L +VAGE+SGD +G+ LM+A++K P G +SLF ME++A
Sbjct: 3 KKSQLVFAMVAGELSGDILGAGLMAALQKTHP-NARFVGIGGPRMEALGFESLFAMEELA 61
Query: 88 VMGIWELLPHIYKF-RVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLN 146
VMGI E+L + + VR I++ +P + +D+ F+ L +L+A+
Sbjct: 62 VMGIVEVLSRLPRLLHVRAS-LIKSITELKPDCFIGIDAPDFNIGLELKLKAQ------- 113
Query: 147 GPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVED 206
G HYV+PS WAW+ R+ +A + +L +LP E+A + + TFVGH + +D
Sbjct: 114 GIKTVHYVSPSVWAWR--PKRIFKIAKATNMVLSLLPFEKAFYDKHQVPCTFVGHTLADD 171
Query: 207 C-LELNLGKGPEPCELKME 224
LE + + EL E
Sbjct: 172 IPLESDKACARQVLELDQE 190
Score = 175 (66.7 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 46/170 (27%), Positives = 79/170 (46%)
Query: 220 ELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVI 279
++ +E + + + A +++LPGSR E+ ++ F K L+K FP++ V
Sbjct: 171 DIPLESDKACARQVLELDQEAEYLAILPGSRGGELKQLAEPFVKAALLIKQQFPDIRFVT 230
Query: 280 HVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARL 339
+ + E + L P I + G S + +A+ L SGT +E L +
Sbjct: 231 PLVNQKRREQFEQALKDHAPDLEIHMVEGKSR---EVMAAADGILLASGTATLEAMLIKR 287
Query: 340 PCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTL 389
P VVAYR LT + ++ SLPN+L ++PE + CTP+ +
Sbjct: 288 PMVVAYRVSPLTYSIAKRMMQVNRFSLPNLLAGCDVVPELIQHDCTPEKI 337
>TIGR_CMR|SPO_1675 [details] [associations]
symbol:SPO_1675 "lipid-A-disaccharide synthase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0009245
UniPathway:UPA00359 eggNOG:COG0763 HOGENOM:HOG000018004 KO:K00748
GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215 OMA:PTVWAWR
RefSeq:YP_166914.1 ProteinModelPortal:Q5LSU1 GeneID:3194064
KEGG:sil:SPO1675 PATRIC:23376675 ProtClustDB:CLSK933604
Uniprot:Q5LSU1
Length = 401
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 80/244 (32%), Positives = 125/244 (51%)
Query: 152 HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELN 211
HYVAPS WAW+ G A +A +DH+L +LP E G+ FVGHPVV +
Sbjct: 130 HYVAPSVWAWRPGRA--DKMAKVIDHVLALLPFEPPYMERAGMECDFVGHPVVTE----- 182
Query: 212 LGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS 271
PE + + + + A V+ LPGSR EV R+ P+F +
Sbjct: 183 ----PEATGADIAA----LRTELGL-GAAPVLLALPGSRRGEVERLAPVFGAALRRFLPE 233
Query: 272 FPELITVIHVAPNRHVENYITGLIQKWPVPSILV------PGGSSNLKYDAFSASRVALC 325
P++ V+ V P HV + + + +WP +LV P ++ K AF+A+ +AL
Sbjct: 234 HPDMRVVVPVVP--HVADQVAQQVAEWPGAPVLVDPRGLAPAQAAMRKRAAFAAADLALA 291
Query: 326 TSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACT 385
SGTV++EL A P V+AY+ ++LT+ I ++L N++ ++ ++PE L ACT
Sbjct: 292 ASGTVSLELAAAGTPMVIAYKVNWLTQKIAERMVTIDTVTLVNLVSETRVVPECLGPACT 351
Query: 386 PDTL 389
P+ +
Sbjct: 352 PENI 355
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 77/225 (34%), Positives = 115/225 (51%)
Query: 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPXXXXXXXXXXXXEQGMKSLFPMEDIAVMGI 91
+RVFI+AGE SGD +G LM+ +++L P +G+ S FPM ++++MG+
Sbjct: 17 MRVFILAGEPSGDRLGGALMAGLRQLCP-DVQFDGVGGPAMESEGLSSRFPMAELSIMGL 75
Query: 92 WELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHF 151
E+LP + + R+ ET +A L RP ++T+DS FS R+ + ++ S R
Sbjct: 76 VEVLPKYFHLKRRIAETAQAVLAMRPDVMITIDSPDFSLRVARLVKDA-SDIRT-----V 129
Query: 152 HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVED----- 206
HYVAPS WAW+ G A +A +DH+L +LP E G+ FVGHPVV +
Sbjct: 130 HYVAPSVWAWRPGRA--DKMAKVIDHVLALLPFEPPYMERAGMECDFVGHPVVTEPEATG 187
Query: 207 ----CLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 247
L LG G P L + G+ + + GA + LP
Sbjct: 188 ADIAALRTELGLGAAPVLLALPGSRRGEVERLAPVFGAALRRFLP 232
>UNIPROTKB|Q9KPW5 [details] [associations]
symbol:lpxB "Lipid-A-disaccharide synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009245
UniPathway:UPA00359 CAZy:GT19 eggNOG:COG0763 KO:K00748
GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215 OMA:PTVWAWR
ProtClustDB:PRK00025 PIR:A82101 RefSeq:NP_231878.1
ProteinModelPortal:Q9KPW5 DNASU:2613169 GeneID:2613169
KEGG:vch:VC2247 PATRIC:20083537 Uniprot:Q9KPW5
Length = 379
Score = 191 (72.3 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 55/177 (31%), Positives = 85/177 (48%)
Query: 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPXXXXXXXXXXXXEQGMKSLFPMEDIAVMGI 91
LR+ IV GE+SGD++G + A++ P G +SLF ME++AVMG+
Sbjct: 5 LRIGIVVGELSGDTLGEGFIKAIRARYP-DAEFVGIGGPKMNALGCQSLFDMEELAVMGL 63
Query: 92 WELL---PHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGP 148
E+L P + K + L + A P V +D+ F+ RL L+ G
Sbjct: 64 VEVLGRLPRLLKVKAELVKYFTAN---PPDVFVGIDAPDFNLRLELSLKQA-------GI 113
Query: 149 AHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVE 205
HYV+PS WAW+ + R+ +AA +L LP E+A + F+GH + +
Sbjct: 114 KTVHYVSPSVWAWR--QNRIHGIAAATHLVLAFLPFEKAFYDKFNVPCEFIGHTLAD 168
Score = 180 (68.4 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 47/150 (31%), Positives = 75/150 (50%)
Query: 243 ISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP-VP 301
+++LPGSR E+ + F T + L+ +P+L V+ + + + Q P +
Sbjct: 192 LAVLPGSRGSEMKMLAEPFIATCQKLQARYPDLGFVVALVNAKRRAQFEQAWQQVAPELN 251
Query: 302 SILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKI 361
+LV + N+ +A+ + SGTVA+E L + P VV YR + T + + K
Sbjct: 252 FVLVDDTARNV----ITAADAVMLASGTVALECMLLKRPMVVGYRVNAFTAFLAKRLLKT 307
Query: 362 PYISLPNILLDSPIIPEALLQACTPDTLTH 391
PY+SLPNIL ++ E L CT D L H
Sbjct: 308 PYVSLPNILAGEELVKELLQDHCTVDNLYH 337
>TIGR_CMR|VC_2247 [details] [associations]
symbol:VC_2247 "lipid-A-disaccharide synthase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009245
UniPathway:UPA00359 CAZy:GT19 eggNOG:COG0763 KO:K00748
GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215 OMA:PTVWAWR
ProtClustDB:PRK00025 PIR:A82101 RefSeq:NP_231878.1
ProteinModelPortal:Q9KPW5 DNASU:2613169 GeneID:2613169
KEGG:vch:VC2247 PATRIC:20083537 Uniprot:Q9KPW5
Length = 379
Score = 191 (72.3 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 55/177 (31%), Positives = 85/177 (48%)
Query: 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPXXXXXXXXXXXXEQGMKSLFPMEDIAVMGI 91
LR+ IV GE+SGD++G + A++ P G +SLF ME++AVMG+
Sbjct: 5 LRIGIVVGELSGDTLGEGFIKAIRARYP-DAEFVGIGGPKMNALGCQSLFDMEELAVMGL 63
Query: 92 WELL---PHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGP 148
E+L P + K + L + A P V +D+ F+ RL L+ G
Sbjct: 64 VEVLGRLPRLLKVKAELVKYFTAN---PPDVFVGIDAPDFNLRLELSLKQA-------GI 113
Query: 149 AHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVE 205
HYV+PS WAW+ + R+ +AA +L LP E+A + F+GH + +
Sbjct: 114 KTVHYVSPSVWAWR--QNRIHGIAAATHLVLAFLPFEKAFYDKFNVPCEFIGHTLAD 168
Score = 180 (68.4 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 47/150 (31%), Positives = 75/150 (50%)
Query: 243 ISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP-VP 301
+++LPGSR E+ + F T + L+ +P+L V+ + + + Q P +
Sbjct: 192 LAVLPGSRGSEMKMLAEPFIATCQKLQARYPDLGFVVALVNAKRRAQFEQAWQQVAPELN 251
Query: 302 SILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKI 361
+LV + N+ +A+ + SGTVA+E L + P VV YR + T + + K
Sbjct: 252 FVLVDDTARNV----ITAADAVMLASGTVALECMLLKRPMVVGYRVNAFTAFLAKRLLKT 307
Query: 362 PYISLPNILLDSPIIPEALLQACTPDTLTH 391
PY+SLPNIL ++ E L CT D L H
Sbjct: 308 PYVSLPNILAGEELVKELLQDHCTVDNLYH 337
>TIGR_CMR|CBU_0620 [details] [associations]
symbol:CBU_0620 "lipid A disaccharide synthase"
species:227377 "Coxiella burnetii RSA 493" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0009245
UniPathway:UPA00359 eggNOG:COG0763 HOGENOM:HOG000018004 KO:K00748
OMA:IARMLVN GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215
ProtClustDB:PRK00025 RefSeq:NP_819650.1 ProteinModelPortal:Q83DS5
GeneID:1208505 KEGG:cbu:CBU_0620 PATRIC:17929925
BioCyc:CBUR227377:GJ7S-618-MONOMER Uniprot:Q83DS5
Length = 376
Score = 240 (89.5 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 65/251 (25%), Positives = 117/251 (46%)
Query: 34 VFIVAGEVSGDSIGSRLMSAMKKLAPLPXXXXXXXXXXXXEQGMKSLFPMEDIAVMGIWE 93
V ++AGE SGD +G+ L ++K L P E G++ + +AV+G+ E
Sbjct: 6 VLLIAGEPSGDLLGAHLAQSLKSLEP-NLKLAGMGGKRMREAGVEVFINADKLAVVGLLE 64
Query: 94 LLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHY 153
+L R ++ P VV +D GF+ + KQ + G +Y
Sbjct: 65 ILRQFRDIRHAMQTLKRYFKKTPPDLVVFIDYPGFNLHMAKQAKKA-------GIKVLYY 117
Query: 154 VAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLG 213
V+P WAW+ G R+K + +VDH+ + EE + + + +FVGHP L
Sbjct: 118 VSPQIWAWRYG--RIKKIKKYVDHMAVLFDFEEKLYQKENVPVSFVGHP---------LA 166
Query: 214 KGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFP 273
P P + N + ++++ +++L PGSR QE+ ++LP+ + +L++ P
Sbjct: 167 NAPTP---SLSRN--EICKQFNLDPDKPIVALFPGSREQEINKLLPMMVQAGKLIQTQIP 221
Query: 274 ELITVIHVAPN 284
+ ++ +A N
Sbjct: 222 TVQFILPLALN 232
Score = 168 (64.2 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 40/157 (25%), Positives = 83/157 (52%)
Query: 233 KYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYIT 292
++++ +++L PGSR QE+ ++LP+ + +L++ P + ++ +A N ++
Sbjct: 181 QFNLDPDKPIVALFPGSREQEINKLLPMMVQAGKLIQTQIPTVQFILPLALNLALDK--- 237
Query: 293 GLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTE 352
I+ + P I V +++ Y + + A+ SGTV +E+ L ++P V+ Y+ LT
Sbjct: 238 --IRPFLSPEIKVI--QNDISY-VLAIAHAAVAASGTVTLEIALQQVPLVIIYKVAPLTF 292
Query: 353 WFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTL 389
W + ++ +I L N++ P+ E L Q TP +
Sbjct: 293 WLGKKLIRLSFIGLCNLVSPEPVAVELLQQDATPQAI 329
>TIGR_CMR|CPS_1568 [details] [associations]
symbol:CPS_1568 "lipid-A-disaccharide synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009245
UniPathway:UPA00359 CAZy:GT19 eggNOG:COG0763 KO:K00748
GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215 RefSeq:YP_268310.1
ProteinModelPortal:Q485F5 STRING:Q485F5 GeneID:3523039
KEGG:cps:CPS_1568 PATRIC:21466341 HOGENOM:HOG000018003 OMA:PTVWAWR
ProtClustDB:PRK00025 BioCyc:CPSY167879:GI48-1649-MONOMER
Uniprot:Q485F5
Length = 393
Score = 241 (89.9 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 68/247 (27%), Positives = 130/247 (52%)
Query: 34 VF-IVAGEVSGDSIGSRLMSAMKKLAPLPXXXXXXXXXXXXEQGMKSLFPMEDIAVMGIW 92
VF +V GE SGD++G+ L++++++ P G +SLF M++++VMG+
Sbjct: 13 VFAMVVGEHSGDTLGAGLITSLRQTHP-HAKFIGIGGPKMLALGFESLFAMDELSVMGLV 71
Query: 93 ELLPHIYKFRVRLKETI-EAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHF 151
E+L I + + +++T+ + + +P + +D+ F+ L +L+ + G
Sbjct: 72 EVLGRIRRL-LHVRKTLTDFFITNKPDVFIGIDAPDFNIGLELKLKVK-------GIKTV 123
Query: 152 HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELN 211
HYV+PS WAW+ E R+ +A D +L +LP E+A + + TFVGHP+ +D
Sbjct: 124 HYVSPSVWAWR--EKRIFKIAKATDMVLALLPFEKAFYDKHNVPCTFVGHPLADD----- 176
Query: 212 LGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS 271
+ M+ + ++K + +++L+PGSR E++R+L F ++ + L+
Sbjct: 177 ---------IPMQSDKVLARDKLGLAQDKKILALMPGSRGGELSRLLEDFFESAKQLQAQ 227
Query: 272 FPELITV 278
EL+ V
Sbjct: 228 DSELLFV 234
Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 43/174 (24%), Positives = 84/174 (48%)
Query: 220 ELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVI 279
++ M+ + ++K + +++L+PGSR E++R+L F ++ + L+ EL+ V
Sbjct: 176 DIPMQSDKVLARDKLGLAQDKKILALMPGSRGGELSRLLEDFFESAKQLQAQDSELLFVA 235
Query: 280 HVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARL 339
+ + + + P I + N +AS L SGTV +E L +
Sbjct: 236 PMISEQRANQFNALKAELAPDLDIEIV---LNQTQQVMAASDCLLTASGTVTLEAALIKR 292
Query: 340 PCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTLTHLL 393
P V+ Y+ +T + R K+ + SLPN+L + ++PE L + P+ + L+
Sbjct: 293 PMVICYKFSPITFFLGRRFVKLKWFSLPNLLTNKSLVPELLQKDVCPENIVPLV 346
>TIGR_CMR|GSU_2261 [details] [associations]
symbol:GSU_2261 "lipid A disaccharide synthase (lpxB)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009245
UniPathway:UPA00359 eggNOG:COG0763 HOGENOM:HOG000018004 KO:K00748
OMA:IARMLVN GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215
ProtClustDB:PRK00025 RefSeq:NP_953310.1 ProteinModelPortal:Q74AT9
GeneID:2685733 KEGG:gsu:GSU2261 PATRIC:22027377
BioCyc:GSUL243231:GH27-2256-MONOMER Uniprot:Q74AT9
Length = 384
Score = 235 (87.8 bits), Expect = 9.2e-18, P = 9.2e-18
Identities = 67/251 (26%), Positives = 121/251 (48%)
Query: 33 RVFIVAGEVSGDSIGSRLMSAMKKLAPLPXXXXXXXXXXXXEQGMKSLFPMEDIAVMGIW 92
R+ IVAGE SGD G+ L+ +L P E G+++L ++AV+GI
Sbjct: 8 RIMIVAGEASGDLHGAGLVREALRLDPT-LSFFGIGGPRMREAGVETLVDSSEMAVVGIV 66
Query: 93 ELLPHIYKFRVRLKETIEAALLFRP-HAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHF 151
E+L HI R T+ ++ P ++ +D F+ L AR + R +G
Sbjct: 67 EVLAHIGVIS-RAFMTLRQVIVSNPPDLLILIDYPDFNMLL-----ARVA--RRHGVKVL 118
Query: 152 HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELN 211
+Y++P WAW+ G R+K + VD + + P E G+ +FVGHP+ D +
Sbjct: 119 YYISPQVWAWRTG--RVKTIGRLVDRMAVVFPFEVPFYERAGVPVSFVGHPLA-DRVRPT 175
Query: 212 LGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS 271
+G+ ++ + + G V+ L PGSR E+A++ P+ ++ + L++
Sbjct: 176 MGR-------------DEALASFGLDPGRRVVGLFPGSRRGEIAKLFPVILESAQQLRER 222
Query: 272 FPELITVIHVA 282
+P++ ++ +A
Sbjct: 223 YPDIQFILPLA 233
Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 35/156 (22%), Positives = 77/156 (49%)
Query: 234 YSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITG 293
+ + G V+ L PGSR E+A++ P+ ++ + L++ +P++ ++ +A + + I
Sbjct: 185 FGLDPGRRVVGLFPGSRRGEIAKLFPVILESAQQLRERYPDIQFILPLASSL-TDGDIAP 243
Query: 294 LIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEW 353
L+ + + V + + YD + SGTV +E+ L +P V+ Y+ LT
Sbjct: 244 LLAASGL-DVTV---TQDRVYDVMQVCDAIITVSGTVTLEIALMGVPMVIIYKVSPLTYQ 299
Query: 354 FIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTL 389
+ ++ +I + NI+ ++PE + + D +
Sbjct: 300 VGKRLIRVDHIGICNIVAGERVVPELIQDDASADRI 335
>TIGR_CMR|CJE_0336 [details] [associations]
symbol:CJE_0336 "lipid-A-disaccharide synthetase"
species:195099 "Campylobacter jejuni RM1221" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009245
UniPathway:UPA00359 RefSeq:YP_178356.1 ProteinModelPortal:Q5HWH9
STRING:Q5HWH9 CAZy:GT19 GeneID:3231098 KEGG:cjr:CJE0336
PATRIC:20042374 eggNOG:COG0763 HOGENOM:HOG000018004 KO:K00748
OMA:IARMLVN ProtClustDB:PRK14089 BioCyc:CJEJ195099:GJC0-341-MONOMER
GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215 Uniprot:Q5HWH9
Length = 364
Score = 148 (57.2 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 39/132 (29%), Positives = 67/132 (50%)
Query: 78 KSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137
K L+ + + MG E+LP I+K + +KE + L AV+ +DS F+ K L+
Sbjct: 50 KPLYSSHEFSAMGFIEVLPLIFKAKKAIKELVNLTLSQTMDAVLCIDSPAFNIPFAKALK 109
Query: 138 ARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAAT 197
S ++ P +Y+ P WAWK G R+ + + D + ILP + N +T
Sbjct: 110 KAGS--KI--P-RIYYILPQVWAWKKG--RIPIIESHFDILASILPFDNQF--FN--KST 158
Query: 198 FVGHPVVEDCLE 209
++GHP++++ E
Sbjct: 159 YIGHPLLDEIKE 170
Score = 130 (50.8 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 49/178 (27%), Positives = 84/178 (47%)
Query: 196 ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVA 255
+T++GHP+++ E+K N ED + +S I+ LPGSR E+
Sbjct: 157 STYIGHPLLD--------------EIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIR 202
Query: 256 RMLPIFAKTVELLKDSFPELITVIHVAPNRHVENY-ITGLIQKWPVPSILVPGGSSNLKY 314
R++PIF + + K +++ V P+ ++E + G I ++ + S P LK
Sbjct: 203 RLMPIFKELSQKFKGE--KILCV----PSFNLEKLEVYGDISEFKIESN-TP---KVLKK 252
Query: 315 DAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLD 372
F+ +C SGT +E L P V+AY+A + + + K+ +I L NI D
Sbjct: 253 ADFAF----IC-SGTATLEAALVGTPFVLAYKAKAIDIFIAKLFVKLKHIGLANIFCD 305
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.139 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 394 370 0.00086 117 3 11 22 0.49 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 620 (66 KB)
Total size of DFA: 245 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.96u 0.14s 30.10t Elapsed: 00:00:01
Total cpu time: 29.96u 0.14s 30.10t Elapsed: 00:00:01
Start: Fri May 10 14:18:21 2013 End: Fri May 10 14:18:22 2013