BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016179
         (394 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
           Complex With 1-Deoxymannojirimycin
 pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
           Complex With Kifunensine
          Length = 460

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 164 GEARLKNLAAFVDHILCILPNEEAICRLNGLAATFV--GHPVVEDCLELN 211
           GE      +A +DH++C LP   A+   +GL A+ +     ++E C ++N
Sbjct: 272 GELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 321


>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
          Length = 458

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 164 GEARLKNLAAFVDHILCILPNEEAICRLNGLAATFV--GHPVVEDCLELN 211
           GE      +A +DH++C LP   A+   +GL A+ +     ++E C ++N
Sbjct: 272 GELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 321


>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase
           In Complex With Thio-Disaccharide Substrate Analogue
          Length = 538

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 164 GEARLKNLAAFVDHILCILPNEEAICRLNGLAATFV--GHPVVEDCLELN 211
           GE      +A +DH++C LP   A+   +GL A+ +     ++E C ++N
Sbjct: 350 GELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 399


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,124,452
Number of Sequences: 62578
Number of extensions: 436947
Number of successful extensions: 1098
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 5
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)