Query 016179
Match_columns 394
No_of_seqs 220 out of 1431
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:31:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0763 LpxB Lipid A disacchar 100.0 4.7E-77 1E-81 569.7 34.0 336 31-393 1-338 (381)
2 PF02684 LpxB: Lipid-A-disacch 100.0 5.1E-77 1.1E-81 582.5 34.9 334 34-393 1-334 (373)
3 PRK01021 lpxB lipid-A-disaccha 100.0 2.8E-73 6.2E-78 575.7 36.8 333 32-393 227-566 (608)
4 PRK14089 ipid-A-disaccharide s 100.0 8E-68 1.7E-72 515.3 32.2 309 31-393 1-313 (347)
5 TIGR00215 lpxB lipid-A-disacch 100.0 2.1E-64 4.6E-69 502.5 36.4 334 32-393 6-341 (385)
6 PRK00025 lpxB lipid-A-disaccha 100.0 1.2E-48 2.7E-53 388.2 37.9 334 31-393 1-335 (380)
7 TIGR03492 conserved hypothetic 100.0 1.5E-38 3.2E-43 317.5 28.7 294 35-367 1-347 (396)
8 PRK12446 undecaprenyldiphospho 100.0 1.1E-37 2.4E-42 306.9 29.0 302 32-393 2-319 (352)
9 COG0707 MurG UDP-N-acetylgluco 100.0 5.5E-36 1.2E-40 292.9 26.1 282 32-360 1-297 (357)
10 PRK13608 diacylglycerol glucos 100.0 8.4E-28 1.8E-32 240.3 24.7 267 30-347 4-302 (391)
11 PRK13609 diacylglycerol glucos 100.0 8.7E-27 1.9E-31 231.8 23.9 277 29-347 2-302 (380)
12 TIGR01133 murG undecaprenyldip 99.9 5.4E-25 1.2E-29 215.5 29.2 266 32-345 1-277 (348)
13 PLN02605 monogalactosyldiacylg 99.9 3.9E-24 8.5E-29 213.1 24.4 206 106-346 90-310 (382)
14 PRK00726 murG undecaprenyldiph 99.9 6.6E-23 1.4E-27 202.0 31.0 270 32-346 2-280 (357)
15 cd03785 GT1_MurG MurG is an N- 99.9 3.5E-22 7.5E-27 195.8 28.4 269 33-345 1-279 (350)
16 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 1.6E-19 3.4E-24 177.9 25.8 286 33-346 1-304 (363)
17 TIGR00236 wecB UDP-N-acetylglu 99.8 3.9E-18 8.5E-23 168.8 28.3 291 32-348 1-303 (365)
18 TIGR00661 MJ1255 conserved hyp 99.7 5.4E-16 1.2E-20 151.1 18.8 275 33-360 1-290 (321)
19 TIGR03590 PseG pseudaminic aci 99.7 4.3E-15 9.4E-20 141.9 23.9 244 41-346 13-268 (279)
20 COG0381 WecB UDP-N-acetylgluco 99.7 3E-14 6.4E-19 138.0 24.5 284 30-346 2-308 (383)
21 TIGR03568 NeuC_NnaA UDP-N-acet 99.6 2.8E-13 6E-18 134.3 29.5 283 32-344 1-306 (365)
22 cd03819 GT1_WavL_like This fam 99.6 1.5E-13 3.3E-18 133.9 25.3 284 34-354 3-303 (355)
23 COG4370 Uncharacterized protei 99.6 1.8E-14 3.8E-19 133.6 16.5 299 30-357 5-350 (412)
24 cd04951 GT1_WbdM_like This fam 99.6 3.1E-13 6.6E-18 131.8 24.4 283 34-352 2-299 (360)
25 cd04962 GT1_like_5 This family 99.6 7.2E-13 1.6E-17 130.3 25.8 289 32-354 1-309 (371)
26 PF13528 Glyco_trans_1_3: Glyc 99.6 5.4E-13 1.2E-17 129.3 23.1 263 32-359 1-292 (318)
27 PLN02871 UDP-sulfoquinovose:DA 99.6 1E-12 2.2E-17 134.5 25.2 287 30-354 57-370 (465)
28 cd03807 GT1_WbnK_like This fam 99.6 1.8E-12 3.8E-17 125.1 25.5 278 38-355 8-308 (365)
29 cd03825 GT1_wcfI_like This fam 99.5 1.3E-12 2.9E-17 127.5 23.2 157 174-354 135-303 (365)
30 PRK05749 3-deoxy-D-manno-octul 99.5 9.1E-13 2E-17 133.1 22.4 272 33-350 52-356 (425)
31 TIGR02149 glgA_Coryne glycogen 99.5 2.8E-12 6.1E-17 127.2 25.5 163 171-354 141-319 (388)
32 PRK10307 putative glycosyl tra 99.5 8.9E-12 1.9E-16 125.3 27.2 158 171-346 168-339 (412)
33 cd03811 GT1_WabH_like This fam 99.5 6E-12 1.3E-16 120.4 23.3 283 33-354 1-302 (353)
34 cd03817 GT1_UGDG_like This fam 99.5 8.4E-12 1.8E-16 121.0 24.3 288 33-354 1-317 (374)
35 cd03823 GT1_ExpE7_like This fa 99.5 1.4E-11 3E-16 119.1 25.3 210 105-355 85-303 (359)
36 cd03816 GT1_ALG1_like This fam 99.5 1.7E-11 3.6E-16 123.8 26.7 301 30-354 2-356 (415)
37 TIGR03088 stp2 sugar transfera 99.5 4.7E-12 1E-16 125.3 22.1 277 37-354 9-311 (374)
38 cd03812 GT1_CapH_like This fam 99.5 1.5E-11 3.3E-16 119.9 25.3 278 33-351 1-302 (358)
39 cd03801 GT1_YqgM_like This fam 99.5 4.1E-11 8.9E-16 115.0 27.0 280 42-355 14-315 (374)
40 cd03808 GT1_cap1E_like This fa 99.5 3E-11 6.6E-16 116.0 26.0 278 33-354 1-302 (359)
41 TIGR02095 glgA glycogen/starch 99.5 1.7E-11 3.7E-16 125.7 25.6 120 227-352 276-402 (473)
42 cd03796 GT1_PIG-A_like This fa 99.5 1E-11 2.2E-16 124.4 23.3 281 33-354 1-308 (398)
43 cd03814 GT1_like_2 This family 99.5 9E-12 1.9E-16 120.8 22.3 283 33-354 1-305 (364)
44 PF04007 DUF354: Protein of un 99.5 9.1E-12 2E-16 121.1 21.6 272 32-356 1-287 (335)
45 cd03820 GT1_amsD_like This fam 99.5 2E-11 4.3E-16 116.7 23.7 258 42-344 13-282 (348)
46 PLN02275 transferase, transfer 99.5 6E-11 1.3E-15 117.9 27.3 206 112-349 96-343 (371)
47 cd05844 GT1_like_7 Glycosyltra 99.4 2.6E-11 5.6E-16 119.0 24.1 252 106-393 72-364 (367)
48 PRK00654 glgA glycogen synthas 99.4 4.9E-11 1.1E-15 122.1 26.5 120 227-352 268-393 (466)
49 PRK15484 lipopolysaccharide 1, 99.4 2.6E-11 5.7E-16 120.9 23.7 205 114-354 97-316 (380)
50 PF02350 Epimerase_2: UDP-N-ac 99.4 1.7E-12 3.7E-17 127.6 14.8 222 101-344 52-283 (346)
51 TIGR03449 mycothiol_MshA UDP-N 99.4 4.6E-11 9.9E-16 119.6 24.7 165 171-354 160-341 (405)
52 cd03798 GT1_wlbH_like This fam 99.4 2.1E-10 4.5E-15 110.6 27.5 285 42-355 14-318 (377)
53 cd03791 GT1_Glycogen_synthase_ 99.4 1E-10 2.2E-15 119.8 26.1 119 227-351 281-406 (476)
54 PRK15179 Vi polysaccharide bio 99.4 2.3E-10 5E-15 121.4 28.8 299 25-354 275-630 (694)
55 cd03821 GT1_Bme6_like This fam 99.4 1.7E-10 3.6E-15 111.7 25.8 219 111-354 82-320 (375)
56 cd03822 GT1_ecORF704_like This 99.4 8.5E-11 1.8E-15 114.2 22.6 280 33-349 1-303 (366)
57 cd03794 GT1_wbuB_like This fam 99.4 1.2E-10 2.6E-15 113.2 23.6 163 171-354 162-338 (394)
58 PRK14099 glycogen synthase; Pr 99.4 2.8E-10 6E-15 117.0 27.1 172 170-350 205-404 (485)
59 cd03784 GT1_Gtf_like This fami 99.4 5.5E-11 1.2E-15 119.0 21.1 108 237-360 236-345 (401)
60 PLN02316 synthase/transferase 99.4 5.4E-10 1.2E-14 121.6 28.9 224 114-354 707-958 (1036)
61 cd03792 GT1_Trehalose_phosphor 99.4 4.7E-11 1E-15 118.3 19.3 289 33-354 1-312 (372)
62 cd03805 GT1_ALG2_like This fam 99.3 4.7E-10 1E-14 111.4 25.1 165 172-354 152-338 (392)
63 PLN02846 digalactosyldiacylgly 99.3 1.2E-10 2.6E-15 117.9 20.1 280 29-345 2-331 (462)
64 COG3980 spsG Spore coat polysa 99.3 2.2E-10 4.8E-15 106.0 19.6 241 32-344 1-252 (318)
65 PRK09922 UDP-D-galactose:(gluc 99.3 5.5E-10 1.2E-14 110.3 23.9 210 105-354 73-297 (359)
66 cd03818 GT1_ExpC_like This fam 99.3 7E-10 1.5E-14 111.0 24.0 167 172-354 154-339 (396)
67 cd03799 GT1_amsK_like This is 99.3 2.2E-09 4.9E-14 104.3 26.9 280 33-354 1-300 (355)
68 cd03800 GT1_Sucrose_synthase T 99.3 7.1E-10 1.5E-14 109.8 23.3 286 41-354 20-341 (398)
69 TIGR01426 MGT glycosyltransfer 99.3 7.8E-10 1.7E-14 110.6 22.3 109 238-360 223-332 (392)
70 COG4671 Predicted glycosyl tra 99.3 1.6E-09 3.5E-14 103.2 22.7 298 30-371 8-346 (400)
71 PLN02501 digalactosyldiacylgly 99.3 1.7E-10 3.7E-15 119.6 17.4 208 105-345 423-649 (794)
72 cd03795 GT1_like_4 This family 99.2 2.8E-09 6.1E-14 103.7 24.4 283 33-354 1-304 (357)
73 cd03802 GT1_AviGT4_like This f 99.2 3E-09 6.4E-14 102.8 23.5 264 32-354 1-283 (335)
74 cd04955 GT1_like_6 This family 99.2 7.4E-09 1.6E-13 101.1 25.0 153 172-350 141-303 (363)
75 PRK15490 Vi polysaccharide bio 99.2 1.6E-09 3.6E-14 110.8 20.0 222 101-354 265-511 (578)
76 cd03809 GT1_mtfB_like This fam 99.2 3.9E-09 8.5E-14 102.4 20.8 272 41-351 15-308 (365)
77 PF04101 Glyco_tran_28_C: Glyc 99.2 5.2E-12 1.1E-16 111.2 0.3 97 242-345 1-99 (167)
78 PRK15427 colanic acid biosynth 99.2 4E-09 8.7E-14 106.2 21.0 252 109-393 111-399 (406)
79 COG1817 Uncharacterized protei 99.1 9.7E-09 2.1E-13 96.5 20.9 269 32-347 1-280 (346)
80 PLN02939 transferase, transfer 99.1 1.8E-08 3.8E-13 108.4 25.5 120 226-351 762-892 (977)
81 cd03806 GT1_ALG11_like This fa 99.1 8.2E-09 1.8E-13 104.4 22.0 154 172-349 187-359 (419)
82 PRK14098 glycogen synthase; Pr 99.1 7.2E-09 1.6E-13 106.7 21.9 118 227-350 292-416 (489)
83 cd03813 GT1_like_3 This family 99.1 5.2E-09 1.1E-13 107.5 19.8 157 172-355 242-410 (475)
84 PF06925 MGDG_synth: Monogalac 99.1 8.4E-10 1.8E-14 97.6 10.6 84 105-203 78-169 (169)
85 PLN02949 transferase, transfer 99.0 1.1E-07 2.3E-12 97.3 25.5 152 173-348 219-388 (463)
86 PRK10125 putative glycosyl tra 99.0 2.9E-08 6.2E-13 100.0 21.0 146 175-354 191-345 (405)
87 TIGR02472 sucr_P_syn_N sucrose 99.0 8.3E-08 1.8E-12 97.6 22.3 170 171-354 181-379 (439)
88 TIGR02468 sucrsPsyn_pln sucros 98.8 7.4E-07 1.6E-11 97.4 24.0 115 233-354 472-610 (1050)
89 TIGR03087 stp1 sugar transfera 98.8 1.9E-07 4.1E-12 93.5 15.6 149 171-345 169-329 (397)
90 cd03804 GT1_wbaZ_like This fam 98.8 2.7E-07 5.9E-12 90.4 16.4 142 172-352 151-297 (351)
91 COG1519 KdtA 3-deoxy-D-manno-o 98.7 4.9E-06 1.1E-10 82.0 21.9 275 32-352 50-356 (419)
92 PLN00142 sucrose synthase 98.7 3.4E-06 7.3E-11 90.4 22.5 120 231-354 562-705 (815)
93 TIGR02470 sucr_synth sucrose s 98.7 3E-06 6.5E-11 90.7 21.9 121 229-354 537-682 (784)
94 PHA01633 putative glycosyl tra 98.6 2.2E-06 4.8E-11 83.8 18.5 151 175-351 93-259 (335)
95 PHA01630 putative group 1 glyc 98.6 7.5E-07 1.6E-11 87.3 14.9 148 172-354 92-248 (331)
96 TIGR02918 accessory Sec system 98.6 1.7E-06 3.7E-11 89.4 18.0 150 172-354 268-432 (500)
97 cd01635 Glycosyltransferase_GT 98.6 1E-05 2.3E-10 72.7 21.1 85 258-344 119-211 (229)
98 COG1819 Glycosyl transferases, 98.6 1.7E-06 3.6E-11 87.1 17.0 107 236-359 233-340 (406)
99 COG3660 Predicted nucleoside-d 98.5 1.8E-05 4E-10 73.0 20.0 198 113-348 67-275 (329)
100 cd03789 GT1_LPS_heptosyltransf 98.5 2.2E-05 4.8E-10 74.8 20.6 106 241-351 122-230 (279)
101 COG0859 RfaF ADP-heptose:LPS h 98.5 1.4E-05 3E-10 78.5 18.9 276 31-350 1-282 (334)
102 PF00534 Glycos_transf_1: Glyc 98.4 4E-06 8.7E-11 73.4 12.5 121 227-353 2-130 (172)
103 cd04949 GT1_gtfA_like This fam 98.4 1.2E-05 2.6E-10 79.3 16.8 147 172-348 155-311 (372)
104 TIGR02195 heptsyl_trn_II lipop 98.4 9.3E-05 2E-09 72.4 22.0 117 228-348 162-280 (334)
105 cd04946 GT1_AmsK_like This fam 98.3 3.4E-05 7.3E-10 77.7 18.8 154 171-354 180-349 (407)
106 cd04950 GT1_like_1 Glycosyltra 98.3 1.7E-05 3.7E-10 78.9 16.1 150 170-344 149-308 (373)
107 PRK10916 ADP-heptose:LPS hepto 98.3 0.00015 3.3E-09 71.4 22.1 276 32-346 1-288 (348)
108 cd03788 GT1_TPS Trehalose-6-Ph 98.3 1.6E-05 3.5E-10 81.4 15.8 106 232-340 256-386 (460)
109 TIGR02193 heptsyl_trn_I lipopo 98.2 8.2E-05 1.8E-09 72.3 17.6 107 234-347 173-282 (319)
110 PF08660 Alg14: Oligosaccharid 98.1 7.3E-05 1.6E-09 66.1 13.3 97 95-201 71-169 (170)
111 PRK10422 lipopolysaccharide co 98.1 0.00036 7.9E-09 68.9 19.7 104 240-346 183-289 (352)
112 TIGR02400 trehalose_OtsA alpha 98.1 0.00026 5.6E-09 72.4 18.0 112 230-348 252-393 (456)
113 TIGR02201 heptsyl_trn_III lipo 98.0 0.00065 1.4E-08 66.8 18.9 105 239-347 180-288 (344)
114 PRK10964 ADP-heptose:LPS hepto 97.9 0.001 2.3E-08 64.7 19.2 102 239-346 177-280 (322)
115 PF06258 Mito_fiss_Elm1: Mitoc 97.8 0.00082 1.8E-08 65.2 15.5 197 110-345 51-256 (311)
116 PRK09814 beta-1,6-galactofuran 97.8 0.0028 6E-08 62.1 18.8 192 109-356 56-277 (333)
117 PF03033 Glyco_transf_28: Glyc 97.6 6.3E-05 1.4E-09 63.6 4.6 90 34-124 1-96 (139)
118 PRK10017 colanic acid biosynth 97.6 0.048 1E-06 55.3 25.6 162 169-345 171-354 (426)
119 PF04464 Glyphos_transf: CDP-G 97.6 0.00032 7E-09 69.6 9.3 159 170-348 130-297 (369)
120 PF13692 Glyco_trans_1_4: Glyc 97.5 0.0004 8.7E-09 58.0 8.0 78 258-344 17-101 (135)
121 PF13844 Glyco_transf_41: Glyc 97.4 0.0009 2E-08 67.9 10.0 134 230-373 275-416 (468)
122 cd03793 GT1_Glycogen_synthase_ 97.4 0.022 4.8E-07 59.2 19.9 42 312-354 467-513 (590)
123 PF13579 Glyco_trans_4_4: Glyc 97.3 0.00053 1.2E-08 58.1 6.2 137 44-201 4-159 (160)
124 KOG1111 N-acetylglucosaminyltr 97.3 0.0018 4E-08 62.6 10.2 102 241-349 196-305 (426)
125 PLN03063 alpha,alpha-trehalose 97.1 0.017 3.6E-07 63.2 16.9 106 239-348 278-412 (797)
126 TIGR03609 S_layer_CsaB polysac 97.1 0.11 2.3E-06 50.0 20.2 154 168-345 121-276 (298)
127 COG0297 GlgA Glycogen synthase 97.0 0.0033 7.2E-08 64.4 9.5 121 225-351 277-404 (487)
128 KOG3349 Predicted glycosyltran 96.9 0.0046 1E-07 52.6 8.1 114 241-360 4-125 (170)
129 PF13439 Glyco_transf_4: Glyco 96.9 0.0029 6.3E-08 54.5 7.4 146 41-205 12-173 (177)
130 PF13477 Glyco_trans_4_2: Glyc 96.9 0.015 3.3E-07 48.7 11.1 79 33-124 1-82 (139)
131 PF04230 PS_pyruv_trans: Polys 96.9 0.29 6.3E-06 45.2 20.7 156 168-344 121-282 (286)
132 PLN02448 UDP-glycosyltransfera 96.8 0.45 9.8E-06 48.8 23.5 109 237-360 271-382 (459)
133 PF01075 Glyco_transf_9: Glyco 96.6 0.014 3E-07 54.3 9.5 111 237-351 102-215 (247)
134 KOG1387 Glycosyltransferase [C 96.5 0.69 1.5E-05 45.0 20.4 77 273-349 304-391 (465)
135 PF04413 Glycos_transf_N: 3-De 96.5 0.0097 2.1E-07 53.4 7.5 146 32-202 22-180 (186)
136 TIGR02398 gluc_glyc_Psyn gluco 96.4 0.025 5.3E-07 58.2 10.9 117 228-351 276-421 (487)
137 PF05159 Capsule_synth: Capsul 96.2 0.017 3.6E-07 54.8 7.6 81 260-344 141-224 (269)
138 COG3914 Spy Predicted O-linked 96.2 0.03 6.5E-07 57.5 9.6 116 230-351 420-543 (620)
139 PLN03007 UDP-glucosyltransfera 96.1 1.2 2.5E-05 46.1 21.4 112 237-359 282-403 (482)
140 COG2327 WcaK Polysaccharide py 96.1 1.7 3.8E-05 43.2 24.1 155 171-345 149-311 (385)
141 PRK14501 putative bifunctional 95.8 0.027 5.8E-07 61.2 7.8 100 238-340 263-387 (726)
142 PHA03392 egt ecdysteroid UDP-g 95.7 0.15 3.1E-06 53.1 12.6 103 240-359 296-404 (507)
143 PLN00414 glycosyltransferase f 95.7 3 6.5E-05 42.7 23.7 117 232-359 244-370 (446)
144 KOG2941 Beta-1,4-mannosyltrans 94.9 4.2 9.1E-05 39.8 21.6 301 31-350 12-376 (444)
145 COG0438 RfaG Glycosyltransfera 94.7 0.48 1E-05 44.1 12.1 108 241-354 200-315 (381)
146 PLN02208 glycosyltransferase f 94.4 6.9 0.00015 40.0 21.7 35 31-66 4-39 (442)
147 PRK02797 4-alpha-L-fucosyltran 93.9 0.58 1.3E-05 45.1 10.4 108 245-356 149-267 (322)
148 TIGR02094 more_P_ylases alpha- 93.8 0.74 1.6E-05 48.9 12.1 108 236-346 385-511 (601)
149 TIGR02919 accessory Sec system 93.4 0.36 7.9E-06 49.2 8.8 83 260-347 292-379 (438)
150 PF09314 DUF1972: Domain of un 92.6 4.9 0.00011 35.9 13.8 154 32-199 2-180 (185)
151 TIGR03713 acc_sec_asp1 accesso 91.4 0.91 2E-05 47.3 8.9 83 258-342 335-455 (519)
152 PF07429 Glyco_transf_56: 4-al 91.0 1.6 3.5E-05 42.6 9.5 110 240-356 185-306 (360)
153 COG1887 TagB Putative glycosyl 90.7 4.1 9E-05 40.8 12.5 161 174-351 148-317 (388)
154 PF02844 GARS_N: Phosphoribosy 90.5 2.8 6E-05 33.6 8.8 85 32-149 1-89 (100)
155 KOG0853 Glycosyltransferase [C 90.1 0.82 1.8E-05 46.9 6.9 59 291-349 334-400 (495)
156 PF00201 UDPGT: UDP-glucoronos 89.0 6.1 0.00013 40.7 12.6 113 229-359 265-381 (500)
157 KOG3339 Predicted glycosyltran 88.6 3 6.5E-05 37.0 8.3 160 27-201 34-209 (211)
158 COG5017 Uncharacterized conser 87.9 2.3 4.9E-05 36.0 6.8 111 243-368 2-122 (161)
159 PLN02863 UDP-glucoronosyl/UDP- 87.3 2.4 5.2E-05 43.8 8.3 119 230-359 273-401 (477)
160 TIGR00730 conserved hypothetic 87.3 7.1 0.00015 34.7 10.2 34 312-345 89-133 (178)
161 cd04299 GT1_Glycogen_Phosphory 86.5 4.9 0.00011 43.9 10.4 109 236-347 474-601 (778)
162 cd01917 ACS_2 Acetyl-CoA synth 86.1 7.4 0.00016 36.9 9.9 113 35-156 131-257 (287)
163 TIGR00725 conserved hypothetic 86.0 18 0.0004 31.4 12.0 69 313-393 85-158 (159)
164 KOG4626 O-linked N-acetylgluco 86.0 3 6.5E-05 43.8 7.9 134 230-373 749-890 (966)
165 PLN02210 UDP-glucosyl transfer 85.9 2 4.3E-05 44.1 6.8 113 237-360 266-383 (456)
166 PLN02167 UDP-glycosyltransfera 84.5 2.4 5.2E-05 43.7 6.6 108 230-349 270-388 (475)
167 PLN03064 alpha,alpha-trehalose 84.3 5 0.00011 44.7 9.3 105 229-339 355-484 (934)
168 PLN02554 UDP-glycosyltransfera 81.4 6 0.00013 40.9 8.1 36 313-349 352-390 (481)
169 TIGR00511 ribulose_e2b2 ribose 80.5 28 0.00062 33.6 12.0 93 241-346 117-225 (301)
170 COG1184 GCD2 Translation initi 79.6 33 0.00071 33.1 11.8 54 293-349 164-235 (301)
171 PRK09529 bifunctional acetyl-C 79.0 22 0.00048 37.8 11.1 113 35-157 140-267 (711)
172 PRK08535 translation initiatio 78.3 32 0.00069 33.4 11.6 93 241-346 122-230 (310)
173 PF01008 IF-2B: Initiation fac 76.6 18 0.00039 34.3 9.3 94 239-345 107-217 (282)
174 PLN00164 glucosyltransferase; 76.6 9.1 0.0002 39.6 7.7 46 313-359 349-397 (480)
175 COG0151 PurD Phosphoribosylami 76.0 31 0.00067 34.8 10.8 86 32-149 1-90 (428)
176 PRK08335 translation initiatio 75.2 60 0.0013 31.0 12.2 96 241-349 111-222 (275)
177 PF01408 GFO_IDH_MocA: Oxidore 74.8 7.4 0.00016 31.3 5.4 88 32-149 1-89 (120)
178 PLN02207 UDP-glycosyltransfera 74.6 12 0.00026 38.5 7.9 121 230-359 265-390 (468)
179 PLN02562 UDP-glycosyltransfera 74.1 17 0.00037 37.2 8.9 110 238-359 271-386 (448)
180 PLN02410 UDP-glucoronosyl/UDP- 72.7 15 0.00032 37.7 8.0 114 237-359 261-382 (451)
181 PLN02534 UDP-glycosyltransfera 72.6 22 0.00047 36.9 9.2 119 230-359 273-402 (491)
182 PLN02555 limonoid glucosyltran 71.6 18 0.00038 37.5 8.3 45 314-359 348-395 (480)
183 PF10087 DUF2325: Uncharacteri 70.9 21 0.00046 28.0 7.0 38 313-351 42-87 (97)
184 PLN03004 UDP-glycosyltransfera 70.3 15 0.00032 37.7 7.4 46 313-359 344-392 (451)
185 cd08170 GlyDH Glycerol dehydro 70.3 45 0.00099 32.7 10.7 32 105-137 66-97 (351)
186 TIGR00670 asp_carb_tr aspartat 69.0 67 0.0015 31.0 11.2 127 169-327 90-224 (301)
187 PF10093 DUF2331: Uncharacteri 67.4 70 0.0015 31.9 11.1 120 227-357 168-308 (374)
188 PLN02173 UDP-glucosyl transfer 66.3 19 0.00042 36.8 7.3 113 234-360 258-376 (449)
189 PRK09423 gldA glycerol dehydro 65.6 68 0.0015 31.8 10.9 31 106-137 74-104 (366)
190 PLN02152 indole-3-acetate beta 65.5 25 0.00054 36.1 7.9 121 230-359 251-385 (455)
191 PF05693 Glycogen_syn: Glycoge 64.1 11 0.00025 39.7 5.1 45 311-356 461-510 (633)
192 PF00551 Formyl_trans_N: Formy 63.8 17 0.00037 32.1 5.7 28 106-133 69-97 (181)
193 cd08173 Gro1PDH Sn-glycerol-1- 63.6 92 0.002 30.4 11.3 73 32-137 26-98 (339)
194 PRK13789 phosphoribosylamine-- 62.7 62 0.0014 32.8 10.2 21 30-50 3-23 (426)
195 PLN02764 glycosyltransferase f 62.5 32 0.00068 35.3 8.0 117 232-359 249-375 (453)
196 cd08171 GlyDH-like2 Glycerol d 60.7 79 0.0017 31.0 10.3 31 108-139 70-100 (345)
197 cd02070 corrinoid_protein_B12- 60.5 26 0.00057 31.5 6.3 36 31-68 82-117 (201)
198 PRK06849 hypothetical protein; 60.3 36 0.00078 33.9 7.9 79 29-124 2-84 (389)
199 COG1519 KdtA 3-deoxy-D-manno-o 60.2 82 0.0018 31.8 10.1 113 226-345 30-153 (419)
200 TIGR03837 efp_adjacent_2 conse 59.8 95 0.0021 30.9 10.3 120 227-357 167-306 (371)
201 TIGR00524 eIF-2B_rel eIF-2B al 59.4 1.2E+02 0.0025 29.4 10.9 49 295-346 174-239 (303)
202 PRK11891 aspartate carbamoyltr 59.4 1.4E+02 0.003 30.5 11.7 130 169-328 177-317 (429)
203 PRK14569 D-alanyl-alanine synt 59.1 68 0.0015 30.7 9.3 35 30-65 2-41 (296)
204 PLN02251 pyrophosphate-depende 58.6 59 0.0013 34.4 9.2 118 30-153 95-231 (568)
205 cd01080 NAD_bind_m-THF_DH_Cycl 58.4 36 0.00078 29.8 6.6 19 311-329 79-97 (168)
206 PF02310 B12-binding: B12 bind 58.1 81 0.0018 25.2 8.4 32 33-65 2-34 (121)
207 cd05565 PTS_IIB_lactose PTS_II 57.8 48 0.001 26.4 6.6 35 311-345 39-79 (99)
208 cd08550 GlyDH-like Glycerol_de 56.7 1.1E+02 0.0024 30.0 10.6 32 105-137 66-97 (349)
209 PLN02527 aspartate carbamoyltr 56.7 1.6E+02 0.0034 28.6 11.3 129 169-328 91-227 (306)
210 KOG0822 Protein kinase inhibit 55.7 17 0.00037 37.6 4.6 73 241-325 369-445 (649)
211 PRK00843 egsA NAD(P)-dependent 55.5 1.4E+02 0.0031 29.3 11.1 32 105-137 76-107 (350)
212 COG0205 PfkA 6-phosphofructoki 55.4 94 0.002 30.7 9.5 118 31-152 2-129 (347)
213 PRK08192 aspartate carbamoyltr 54.0 1.8E+02 0.0038 28.7 11.3 130 169-328 95-235 (338)
214 PLN03015 UDP-glucosyl transfer 53.8 62 0.0013 33.4 8.4 45 314-359 346-393 (470)
215 cd01078 NAD_bind_H4MPT_DH NADP 53.8 1.3E+02 0.0027 26.6 9.6 19 311-329 89-107 (194)
216 PF04321 RmlD_sub_bind: RmlD s 53.4 18 0.0004 34.4 4.3 59 32-124 1-59 (286)
217 PRK13011 formyltetrahydrofolat 53.4 61 0.0013 31.1 7.8 80 30-125 88-174 (286)
218 PRK00885 phosphoribosylamine-- 53.3 1.1E+02 0.0024 30.7 10.2 22 32-57 1-22 (420)
219 cd08183 Fe-ADH2 Iron-containin 53.3 82 0.0018 31.3 9.1 31 105-136 64-94 (374)
220 KOG1467 Translation initiation 53.1 2.2E+02 0.0048 29.4 11.7 98 239-350 359-473 (556)
221 PRK06027 purU formyltetrahydro 52.3 62 0.0013 31.0 7.7 18 108-125 157-174 (286)
222 PLN02670 transferase, transfer 52.3 77 0.0017 32.7 8.8 44 314-358 350-396 (472)
223 PLN02210 UDP-glucosyl transfer 50.8 1.9E+02 0.0042 29.6 11.5 36 30-66 7-45 (456)
224 PF07355 GRDB: Glycine/sarcosi 50.3 32 0.0007 33.8 5.3 25 104-130 68-92 (349)
225 TIGR00639 PurN phosphoribosylg 50.3 98 0.0021 27.7 8.2 19 107-125 70-88 (190)
226 PRK13010 purU formyltetrahydro 49.2 76 0.0016 30.5 7.7 80 30-125 92-178 (289)
227 COG0163 UbiX 3-polyprenyl-4-hy 48.7 31 0.00067 30.8 4.5 36 31-67 2-37 (191)
228 PLN02413 choline-phosphate cyt 48.5 1.3E+02 0.0028 28.9 8.8 28 41-71 40-67 (294)
229 COG0796 MurI Glutamate racemas 47.8 2.5E+02 0.0055 26.7 11.4 98 30-158 4-101 (269)
230 PRK06372 translation initiatio 47.6 1.8E+02 0.0038 27.5 9.7 48 295-345 130-192 (253)
231 PRK05647 purN phosphoribosylgl 47.5 70 0.0015 28.8 6.9 19 107-125 71-89 (200)
232 PLN02992 coniferyl-alcohol glu 47.4 1E+02 0.0023 31.8 8.9 44 314-358 349-395 (481)
233 COG4635 HemG Flavodoxin [Energ 47.3 1.5E+02 0.0033 25.9 8.3 35 32-67 1-37 (175)
234 PRK10017 colanic acid biosynth 46.7 95 0.0021 31.6 8.4 41 312-352 110-163 (426)
235 cd02174 CCT CTP:phosphocholine 45.8 84 0.0018 27.0 6.8 37 32-71 3-42 (150)
236 COG0299 PurN Folate-dependent 45.8 50 0.0011 29.8 5.4 19 107-125 70-88 (200)
237 COG4394 Uncharacterized protei 45.6 1.5E+02 0.0032 28.6 8.7 111 227-348 164-287 (370)
238 PRK06395 phosphoribosylamine-- 44.9 1.8E+02 0.0039 29.6 10.2 20 31-50 2-21 (435)
239 PLN02342 ornithine carbamoyltr 44.2 2.4E+02 0.0052 27.9 10.5 125 169-327 135-267 (348)
240 cd07766 DHQ_Fe-ADH Dehydroquin 44.0 2.1E+02 0.0046 27.6 10.2 40 106-149 68-107 (332)
241 PRK12311 rpsB 30S ribosomal pr 43.8 1.7E+02 0.0038 28.6 9.3 28 116-150 152-179 (326)
242 cd00765 Pyrophosphate_PFK Phos 43.7 1.6E+02 0.0034 31.1 9.5 94 30-125 71-175 (550)
243 PRK05447 1-deoxy-D-xylulose 5- 43.7 1.9E+02 0.0041 29.0 9.7 44 304-349 76-126 (385)
244 PF11071 DUF2872: Protein of u 43.6 25 0.00053 29.5 2.9 42 315-356 68-121 (141)
245 TIGR00853 pts-lac PTS system, 43.2 1.1E+02 0.0023 24.0 6.5 34 312-345 43-82 (95)
246 COG3535 Uncharacterized conser 43.1 1.1E+02 0.0024 29.9 7.6 79 36-124 19-103 (357)
247 PRK12767 carbamoyl phosphate s 43.1 1.7E+02 0.0037 27.9 9.4 32 31-68 1-32 (326)
248 TIGR00655 PurU formyltetrahydr 43.0 93 0.002 29.7 7.2 80 30-125 83-169 (280)
249 cd05212 NAD_bind_m-THF_DH_Cycl 43.0 95 0.002 26.3 6.6 18 312-329 64-81 (140)
250 COG1091 RfbD dTDP-4-dehydrorha 42.5 73 0.0016 30.5 6.4 17 108-124 42-58 (281)
251 PF03435 Saccharop_dh: Sacchar 42.5 82 0.0018 31.2 7.2 32 311-342 59-95 (386)
252 PF00982 Glyco_transf_20: Glyc 42.0 80 0.0017 32.6 7.1 105 249-354 283-415 (474)
253 cd08549 G1PDH_related Glycerol 41.6 3.3E+02 0.0071 26.5 11.1 27 32-58 25-51 (332)
254 PLN03028 pyrophosphate--fructo 41.3 1.5E+02 0.0033 31.6 9.1 92 32-125 80-182 (610)
255 cd02067 B12-binding B12 bindin 40.8 1.3E+02 0.0027 24.2 6.9 35 33-69 1-35 (119)
256 PRK00865 glutamate racemase; P 40.8 3.1E+02 0.0067 25.7 10.9 95 32-157 6-100 (261)
257 cd08175 G1PDH Glycerol-1-phosp 39.9 3.3E+02 0.0071 26.6 10.9 27 109-137 74-100 (348)
258 PRK00779 ornithine carbamoyltr 39.5 3E+02 0.0065 26.5 10.3 125 169-327 93-225 (304)
259 PF02882 THF_DHG_CYH_C: Tetrah 39.1 1E+02 0.0022 26.8 6.3 19 311-329 71-89 (160)
260 PF05014 Nuc_deoxyrib_tr: Nucl 39.1 46 0.00099 26.7 3.9 33 314-346 56-97 (113)
261 COG1454 EutG Alcohol dehydroge 38.6 1.8E+02 0.0039 29.1 8.7 32 105-137 75-106 (377)
262 TIGR03316 ygeW probable carbam 38.3 3.1E+02 0.0067 27.2 10.3 28 295-327 226-253 (357)
263 cd02069 methionine_synthase_B1 38.0 1E+02 0.0022 28.1 6.4 96 30-135 87-186 (213)
264 TIGR03646 YtoQ_fam YtoQ family 37.8 34 0.00074 28.7 2.9 32 315-346 71-111 (144)
265 PRK02255 putrescine carbamoylt 37.7 3.5E+02 0.0077 26.6 10.6 74 239-327 153-230 (338)
266 PRK10117 trehalose-6-phosphate 37.7 95 0.0021 32.1 6.8 103 247-350 260-391 (474)
267 PF02571 CbiJ: Precorrin-6x re 37.3 2.4E+02 0.0052 26.4 8.9 29 319-347 194-228 (249)
268 TIGR01917 gly_red_sel_B glycin 37.1 66 0.0014 32.5 5.3 58 319-378 336-403 (431)
269 PRK01372 ddl D-alanine--D-alan 36.8 1.9E+02 0.0041 27.4 8.5 35 30-65 3-42 (304)
270 TIGR01918 various_sel_PB selen 36.8 68 0.0015 32.5 5.3 41 104-151 64-112 (431)
271 TIGR02477 PFKA_PPi diphosphate 36.8 1.8E+02 0.0039 30.6 8.7 94 30-125 66-170 (539)
272 cd08551 Fe-ADH iron-containing 36.8 1.8E+02 0.0039 28.7 8.5 32 105-137 69-100 (370)
273 TIGR00715 precor6x_red precorr 36.6 3E+02 0.0065 25.9 9.5 29 319-347 197-232 (256)
274 COG0052 RpsB Ribosomal protein 36.3 2.4E+02 0.0052 26.5 8.5 27 117-150 157-183 (252)
275 TIGR02370 pyl_corrinoid methyl 36.1 2.4E+02 0.0053 25.2 8.6 38 30-69 83-120 (197)
276 PF03641 Lysine_decarbox: Poss 36.0 49 0.0011 27.7 3.7 40 312-351 46-97 (133)
277 PLN02285 methionyl-tRNA formyl 35.8 46 0.001 32.7 4.0 18 108-125 85-102 (334)
278 PRK03202 6-phosphofructokinase 35.6 3.1E+02 0.0067 26.7 9.7 48 103-152 80-127 (320)
279 cd08181 PPD-like 1,3-propanedi 35.2 1.9E+02 0.0041 28.5 8.4 31 105-136 72-102 (357)
280 PLN02331 phosphoribosylglycina 35.2 1.8E+02 0.0039 26.4 7.6 18 108-125 70-87 (207)
281 cd05564 PTS_IIB_chitobiose_lic 35.1 1.3E+02 0.0027 23.6 5.8 33 313-345 40-78 (96)
282 PRK06830 diphosphate--fructose 34.9 1.9E+02 0.0042 29.6 8.4 33 104-137 160-192 (443)
283 cd08186 Fe-ADH8 Iron-containin 34.6 2.1E+02 0.0045 28.5 8.6 30 106-136 74-103 (383)
284 PF05582 Peptidase_U57: YabG p 34.5 38 0.00082 32.3 3.0 21 106-126 144-164 (287)
285 PRK06555 pyrophosphate--fructo 34.3 2.7E+02 0.0058 28.2 9.2 22 104-125 100-121 (403)
286 PRK09271 flavodoxin; Provision 34.3 2.4E+02 0.0052 24.1 8.0 35 32-67 1-37 (160)
287 PF04413 Glycos_transf_N: 3-De 34.2 3.3E+02 0.0072 24.1 9.3 101 241-348 22-129 (186)
288 TIGR02855 spore_yabG sporulati 34.0 38 0.00083 32.1 3.0 20 106-125 143-162 (283)
289 PF03959 FSH1: Serine hydrolas 33.7 1E+02 0.0022 27.8 5.7 92 29-123 2-109 (212)
290 PF12038 DUF3524: Domain of un 33.6 2.3E+02 0.005 24.9 7.5 92 32-157 1-94 (168)
291 PF08323 Glyco_transf_5: Starc 33.5 3.2E+02 0.007 25.2 9.3 39 33-72 1-46 (245)
292 PF12953 DUF3842: Domain of un 33.2 94 0.002 26.1 4.8 44 33-78 1-49 (131)
293 TIGR00877 purD phosphoribosyla 32.7 3.2E+02 0.0069 27.3 9.7 19 32-50 1-19 (423)
294 COG0078 ArgF Ornithine carbamo 32.7 3.8E+02 0.0082 26.0 9.4 83 229-327 143-229 (310)
295 PRK00941 acetyl-CoA decarbonyl 32.3 3E+02 0.0065 30.4 9.6 20 105-124 602-621 (781)
296 PRK14072 6-phosphofructokinase 32.1 3.1E+02 0.0067 27.8 9.4 34 103-137 90-123 (416)
297 PRK07085 diphosphate--fructose 31.9 2.3E+02 0.005 30.0 8.6 93 31-125 70-173 (555)
298 PF09949 DUF2183: Uncharacteri 31.8 2.4E+02 0.0053 22.4 6.9 40 264-303 54-93 (100)
299 PRK02261 methylaspartate mutas 31.7 1.1E+02 0.0023 25.8 5.2 38 30-69 2-39 (137)
300 cd08178 AAD_C C-terminal alcoh 31.4 2.2E+02 0.0047 28.6 8.2 30 107-137 69-98 (398)
301 COG1088 RfbB dTDP-D-glucose 4, 31.3 1.4E+02 0.0031 28.9 6.3 32 32-67 1-32 (340)
302 cd01425 RPS2 Ribosomal protein 31.3 2.6E+02 0.0057 24.9 7.9 29 114-149 125-153 (193)
303 PRK03359 putative electron tra 31.0 4E+02 0.0087 25.0 9.4 27 44-70 38-65 (256)
304 PRK14071 6-phosphofructokinase 31.0 4.6E+02 0.0099 26.0 10.2 48 104-152 95-142 (360)
305 PF13524 Glyco_trans_1_2: Glyc 30.5 37 0.00081 25.8 2.0 24 330-354 14-37 (92)
306 TIGR00512 salvage_mtnA S-methy 30.5 3.3E+02 0.0071 26.8 8.9 52 295-349 202-270 (331)
307 PF01488 Shikimate_DH: Shikima 30.3 1.7E+02 0.0037 24.2 6.2 46 278-329 39-85 (135)
308 PLN02205 alpha,alpha-trehalose 30.2 8.2E+02 0.018 27.4 16.9 95 244-339 341-460 (854)
309 TIGR02371 ala_DH_arch alanine 30.0 2.4E+02 0.0053 27.4 8.1 77 238-329 126-202 (325)
310 COG1618 Predicted nucleotide k 29.9 69 0.0015 28.2 3.6 51 30-83 4-55 (179)
311 cd08194 Fe-ADH6 Iron-containin 29.7 2.6E+02 0.0057 27.7 8.4 32 105-137 69-100 (375)
312 COG0373 HemA Glutamyl-tRNA red 29.6 2E+02 0.0043 29.2 7.4 80 229-329 168-248 (414)
313 COG2039 Pcp Pyrrolidone-carbox 29.5 76 0.0016 28.5 3.9 22 103-124 47-68 (207)
314 COG1899 DYS1 Deoxyhypusine syn 29.5 1.3E+02 0.0027 29.2 5.6 58 38-125 33-91 (318)
315 PRK06823 ornithine cyclodeamin 29.4 1.7E+02 0.0037 28.4 6.8 80 237-331 125-204 (315)
316 COG1611 Predicted Rossmann fol 29.4 4.3E+02 0.0094 23.9 9.4 77 314-393 105-192 (205)
317 PRK05299 rpsB 30S ribosomal pr 29.4 4.5E+02 0.0097 24.8 9.4 27 116-149 157-183 (258)
318 PRK13365 protocatechuate 4,5-d 29.3 72 0.0016 30.5 4.1 27 99-125 31-57 (279)
319 PRK05920 aromatic acid decarbo 29.2 1.1E+02 0.0023 27.8 5.0 36 30-66 2-37 (204)
320 PF02423 OCD_Mu_crystall: Orni 29.2 1.8E+02 0.0039 28.1 6.9 79 238-331 126-204 (313)
321 PF01531 Glyco_transf_11: Glyc 29.2 3.8E+02 0.0082 25.6 9.2 86 260-350 192-279 (298)
322 PF03808 Glyco_tran_WecB: Glyc 29.0 2.5E+02 0.0054 24.4 7.3 35 241-283 49-83 (172)
323 PRK14982 acyl-ACP reductase; P 28.9 1.7E+02 0.0037 28.8 6.7 34 312-345 208-244 (340)
324 COG0031 CysK Cysteine synthase 28.0 1E+02 0.0022 29.8 4.8 34 32-68 170-203 (300)
325 PF01408 GFO_IDH_MocA: Oxidore 27.9 3E+02 0.0065 21.6 9.3 66 272-348 23-95 (120)
326 KOG1611 Predicted short chain- 27.7 1.8E+02 0.004 27.0 6.1 36 242-286 5-40 (249)
327 PRK05784 phosphoribosylamine-- 27.6 3.8E+02 0.0081 27.8 9.3 19 32-50 1-19 (486)
328 COG1086 Predicted nucleoside-d 27.6 1.2E+02 0.0025 32.1 5.4 33 32-67 251-283 (588)
329 PTZ00357 methyltransferase; Pr 27.5 1.5E+02 0.0032 32.3 6.1 36 241-284 702-737 (1072)
330 PLN02828 formyltetrahydrofolat 27.4 2.3E+02 0.0051 26.9 7.1 37 29-68 68-104 (268)
331 PRK02102 ornithine carbamoyltr 27.4 6E+02 0.013 24.9 11.2 126 169-327 96-232 (331)
332 TIGR02329 propionate_PrpR prop 27.3 1.2E+02 0.0025 31.9 5.5 63 319-383 54-122 (526)
333 PRK09134 short chain dehydroge 27.1 4.3E+02 0.0092 24.0 8.9 12 240-251 9-20 (258)
334 TIGR00067 glut_race glutamate 27.0 4.7E+02 0.01 24.4 9.1 81 48-154 11-92 (251)
335 PF02441 Flavoprotein: Flavopr 26.8 76 0.0016 26.1 3.4 33 32-65 1-33 (129)
336 PRK01713 ornithine carbamoyltr 26.2 6.3E+02 0.014 24.7 10.7 127 169-327 96-233 (334)
337 PRK04284 ornithine carbamoyltr 26.2 6.3E+02 0.014 24.7 11.1 126 169-327 95-232 (332)
338 PLN02562 UDP-glycosyltransfera 25.9 6.9E+02 0.015 25.5 10.8 33 32-65 7-40 (448)
339 PRK12743 oxidoreductase; Provi 25.9 4.4E+02 0.0095 23.9 8.8 11 241-251 3-13 (256)
340 PF10686 DUF2493: Protein of u 25.7 2.8E+02 0.006 20.5 7.3 59 240-303 3-61 (71)
341 PRK00026 trmD tRNA (guanine-N( 25.7 5.1E+02 0.011 24.2 8.8 54 329-382 145-199 (244)
342 PRK14191 bifunctional 5,10-met 25.4 2.4E+02 0.0051 27.1 6.8 19 311-329 192-210 (285)
343 PRK06114 short chain dehydroge 25.3 5E+02 0.011 23.5 9.0 12 240-251 8-19 (254)
344 TIGR00676 fadh2 5,10-methylene 24.7 2.3E+02 0.005 26.8 6.6 43 108-155 20-67 (272)
345 PRK05749 3-deoxy-D-manno-octul 24.6 6.9E+02 0.015 24.7 11.1 100 239-345 49-154 (425)
346 TIGR00658 orni_carb_tr ornithi 24.6 6.4E+02 0.014 24.3 11.0 125 169-327 89-224 (304)
347 cd07950 Gallate_Doxase_N The N 24.6 98 0.0021 29.5 4.1 26 100-125 32-57 (277)
348 PRK06371 translation initiatio 24.5 5.7E+02 0.012 25.1 9.4 53 295-350 192-261 (329)
349 PRK13373 putative dioxygenase; 24.4 92 0.002 30.6 3.8 25 100-124 30-54 (344)
350 KOG2764 Putative transcription 24.4 2.8E+02 0.0061 25.8 6.7 44 239-283 66-110 (247)
351 PRK13364 protocatechuate 4,5-d 24.4 1E+02 0.0023 29.3 4.2 26 99-124 31-56 (278)
352 cd08195 DHQS Dehydroquinate sy 24.3 6.7E+02 0.014 24.4 11.4 27 32-58 25-51 (345)
353 COG0379 NadA Quinolinate synth 23.9 5.7E+02 0.012 24.9 8.9 92 259-358 79-178 (324)
354 PRK13372 pcmA protocatechuate 23.7 1.1E+02 0.0025 31.1 4.5 27 98-124 177-203 (444)
355 cd07364 PCA_45_Dioxygenase_B S 23.7 1.1E+02 0.0023 29.3 4.1 25 100-124 32-56 (277)
356 PRK04523 N-acetylornithine car 23.5 7.1E+02 0.015 24.4 10.4 27 296-327 226-252 (335)
357 PRK06756 flavodoxin; Provision 23.4 1.3E+02 0.0028 25.3 4.2 27 32-58 2-30 (148)
358 PRK08063 enoyl-(acyl carrier p 23.3 4.9E+02 0.011 23.3 8.5 11 241-251 5-15 (250)
359 PRK13366 protocatechuate 4,5-d 23.3 1.3E+02 0.0028 28.8 4.6 27 98-124 30-56 (284)
360 PRK06947 glucose-1-dehydrogena 23.1 4.9E+02 0.011 23.3 8.5 11 241-251 3-13 (248)
361 PRK03515 ornithine carbamoyltr 22.8 7.3E+02 0.016 24.3 10.9 127 169-327 95-233 (336)
362 TIGR01011 rpsB_bact ribosomal 22.8 6E+02 0.013 23.3 9.5 28 116-150 155-182 (225)
363 PRK13367 protocatechuate 4,5-d 22.6 1.2E+02 0.0026 30.7 4.4 26 99-124 31-56 (420)
364 PF02056 Glyco_hydro_4: Family 22.5 2.1E+02 0.0045 25.5 5.5 31 294-327 51-81 (183)
365 PF01012 ETF: Electron transfe 22.2 4.9E+02 0.011 22.1 8.7 95 44-152 17-120 (164)
366 cd07949 PCA_45_Doxase_B_like_1 22.2 1.1E+02 0.0024 29.1 4.0 26 100-125 32-57 (276)
367 PRK07589 ornithine cyclodeamin 22.2 5.1E+02 0.011 25.5 8.7 77 238-329 127-203 (346)
368 COG2185 Sbm Methylmalonyl-CoA 22.1 3.5E+02 0.0076 23.1 6.5 49 33-82 65-121 (143)
369 KOG1387 Glycosyltransferase [C 22.1 1.7E+02 0.0038 29.0 5.1 100 261-361 63-173 (465)
370 PRK00994 F420-dependent methyl 21.9 1.6E+02 0.0034 27.5 4.6 37 109-151 53-92 (277)
371 PF02401 LYTB: LytB protein; 21.8 7.1E+02 0.015 23.8 13.3 52 278-331 214-266 (281)
372 PRK00039 ruvC Holliday junctio 21.7 1.8E+02 0.004 25.3 4.9 26 99-124 44-69 (164)
373 PRK12935 acetoacetyl-CoA reduc 21.7 5.5E+02 0.012 22.9 8.5 11 241-251 7-17 (247)
374 PF06032 DUF917: Protein of un 21.7 86 0.0019 31.0 3.2 80 36-124 15-99 (353)
375 PRK07206 hypothetical protein; 21.6 4.2E+02 0.0091 26.3 8.3 32 106-139 60-91 (416)
376 cd00764 Eukaryotic_PFK Phospho 21.5 9E+02 0.02 26.7 11.0 23 103-125 465-487 (762)
377 PLN02757 sirohydrochlorine fer 21.4 5.3E+02 0.011 22.1 9.6 67 238-307 12-80 (154)
378 PRK13660 hypothetical protein; 21.3 1.7E+02 0.0036 26.1 4.6 35 32-67 43-77 (182)
379 cd01141 TroA_d Periplasmic bin 20.9 1.8E+02 0.0039 25.2 4.8 34 109-149 62-95 (186)
380 COG3563 KpsC Capsule polysacch 20.9 1.8E+02 0.004 30.0 5.2 48 301-351 209-256 (671)
381 TIGR01012 Sa_S2_E_A ribosomal 20.8 5.3E+02 0.012 23.2 7.8 89 256-346 44-139 (196)
382 KOG1209 1-Acyl dihydroxyaceton 20.6 2.9E+02 0.0062 25.7 5.9 37 28-69 4-40 (289)
383 COG2236 Predicted phosphoribos 20.4 2.5E+02 0.0054 25.3 5.5 35 103-137 14-51 (192)
384 COG0816 Predicted endonuclease 20.4 2.9E+02 0.0063 23.5 5.7 22 104-126 41-62 (141)
385 PRK06172 short chain dehydroge 20.3 5E+02 0.011 23.3 7.9 11 241-251 8-18 (253)
386 PRK06029 3-octaprenyl-4-hydrox 20.2 1.9E+02 0.004 25.8 4.7 26 32-57 2-27 (185)
387 cd07368 PhnC_Bs_like PhnC is a 20.2 1.7E+02 0.0036 27.9 4.7 27 98-124 28-54 (277)
388 TIGR01182 eda Entner-Doudoroff 20.1 4.7E+02 0.01 23.7 7.4 85 260-350 45-133 (204)
389 PF13941 MutL: MutL protein 20.0 3.1E+02 0.0067 28.2 6.8 55 234-297 121-176 (457)
No 1
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.7e-77 Score=569.67 Aligned_cols=336 Identities=37% Similarity=0.620 Sum_probs=306.6
Q ss_pred CceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHH
Q 016179 31 ELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIE 110 (394)
Q Consensus 31 ~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~ 110 (394)
++||+++|||.|||++++.|+++|+++.|+ ++|+|+||+.|+++|++++++++++++|||.|++++++++++..+++.+
T Consensus 1 ~~ki~i~AGE~SGDllGa~LikaLk~~~~~-~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~ 79 (381)
T COG0763 1 MLKIALSAGEASGDLLGAGLIKALKARYPD-VEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVR 79 (381)
T ss_pred CceEEEEecccchhhHHHHHHHHHHhhCCC-eEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHH
Q 016179 111 AALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICR 190 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~ 190 (394)
.+.+.+||++|++|+|+||.++++++++.+ +++| ++||++||+|||+++ |+.++.+++|++++++|||+++|+
T Consensus 80 ~i~~~kpD~~i~IDsPdFnl~vak~lrk~~----p~i~-iihYV~PsVWAWr~~--Ra~~i~~~~D~lLailPFE~~~y~ 152 (381)
T COG0763 80 YILANKPDVLILIDSPDFNLRVAKKLRKAG----PKIK-IIHYVSPSVWAWRPK--RAVKIAKYVDHLLAILPFEPAFYD 152 (381)
T ss_pred HHHhcCCCEEEEeCCCCCchHHHHHHHHhC----CCCC-eEEEECcceeeechh--hHHHHHHHhhHeeeecCCCHHHHH
Confidence 999999999999999999999999999874 3589 589999999999987 999999999999999999999999
Q ss_pred hcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhh
Q 016179 191 LNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKD 270 (394)
Q Consensus 191 ~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~ 270 (394)
+.|.+++|+|||+.|... + ..+++.+|+++|++.++++|+++||||++||++++|.+.++++.+.+
T Consensus 153 k~g~~~~yVGHpl~d~i~-~-------------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~ 218 (381)
T COG0763 153 KFGLPCTYVGHPLADEIP-L-------------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKA 218 (381)
T ss_pred hcCCCeEEeCChhhhhcc-c-------------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999863 1 24678899999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEEEcCC
Q 016179 271 SFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAH 348 (394)
Q Consensus 271 ~~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~~~ 348 (394)
+.|+++|++++.+. .++....+...... .+..+.+ .+.+++|.+||+++++|||+|||++++|+||||.|+++
T Consensus 219 ~~~~~~~vlp~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~aD~al~aSGT~tLE~aL~g~P~Vv~Yk~~ 293 (381)
T COG0763 219 RYPDLKFVLPLVNA-KYRRIIEEALKWEVAGLSLILID----GEKRKAFAAADAALAASGTATLEAALAGTPMVVAYKVK 293 (381)
T ss_pred hCCCceEEEecCcH-HHHHHHHHHhhccccCceEEecC----chHHHHHHHhhHHHHhccHHHHHHHHhCCCEEEEEecc
Confidence 99999999999864 33443333322211 2233333 47889999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCccchhhhhcCCCCcccccCCCCCHHHHHHHh
Q 016179 349 FLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTLTHLL 393 (394)
Q Consensus 349 ~~~~~~a~~~vk~~~~~l~Nil~~~~i~pEliq~~~~~~~i~~~~ 393 (394)
++|++++|+++|+||+|||||++|++++|||||++|+|++|++++
T Consensus 294 ~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l 338 (381)
T COG0763 294 PITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARAL 338 (381)
T ss_pred HHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999876
No 2
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=100.00 E-value=5.1e-77 Score=582.54 Aligned_cols=334 Identities=37% Similarity=0.653 Sum_probs=302.8
Q ss_pred EEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHHHH
Q 016179 34 VFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAAL 113 (394)
Q Consensus 34 IlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~i~ 113 (394)
|+|+|||.|||+||+.|+++|++++|+ ++++|+||++|+++|++.++|+.+++++|+.|++++++.+++.++++.+.++
T Consensus 1 I~i~AGE~SGD~~ga~Li~~Lk~~~p~-~~~~GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~ 79 (373)
T PF02684_consen 1 IFISAGEASGDLHGARLIRALKARDPD-IEFYGVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIK 79 (373)
T ss_pred CEEEeeCccHHHHHHHHHHHHHhhCCC-cEEEEEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHHhcC
Q 016179 114 LFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNG 193 (394)
Q Consensus 114 ~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~~~g 193 (394)
+++||+||++|||+||+++|+++|+++. .+| ++||++||+|||++| |++++++++|+++|+||||.++|+++|
T Consensus 80 ~~~pd~vIlID~pgFNlrlak~lk~~~~----~~~-viyYI~PqvWAWr~~--R~~~i~~~~D~ll~ifPFE~~~y~~~g 152 (373)
T PF02684_consen 80 EEKPDVVILIDYPGFNLRLAKKLKKRGI----PIK-VIYYISPQVWAWRPG--RAKKIKKYVDHLLVIFPFEPEFYKKHG 152 (373)
T ss_pred HcCCCEEEEeCCCCccHHHHHHHHHhCC----Cce-EEEEECCceeeeCcc--HHHHHHHHHhheeECCcccHHHHhccC
Confidence 9999999999999999999999998732 344 589999999999988 999999999999999999999999999
Q ss_pred CCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCC
Q 016179 194 LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFP 273 (394)
Q Consensus 194 ~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~ 273 (394)
++++|||||+.|.+.. ..++...++++ +++++++|++|||||.+||++++|.|+++++.+.+++|
T Consensus 153 ~~~~~VGHPl~d~~~~--------------~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p 217 (373)
T PF02684_consen 153 VPVTYVGHPLLDEVKP--------------EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRP 217 (373)
T ss_pred CCeEEECCcchhhhcc--------------CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999998753 12456677777 99999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEEEcCChHHHH
Q 016179 274 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEW 353 (394)
Q Consensus 274 ~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~~~~~~~~ 353 (394)
+++|+++++++. .++.+++.......++.+... .++.+++|++||+++++|||+|+|++++|+||||+|+++++||+
T Consensus 218 ~l~fvvp~a~~~-~~~~i~~~~~~~~~~~~~~~~--~~~~~~~m~~ad~al~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~ 294 (373)
T PF02684_consen 218 DLQFVVPVAPEV-HEELIEEILAEYPPDVSIVII--EGESYDAMAAADAALAASGTATLEAALLGVPMVVAYKVSPLTYF 294 (373)
T ss_pred CeEEEEecCCHH-HHHHHHHHHHhhCCCCeEEEc--CCchHHHHHhCcchhhcCCHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 999999998743 344455544443333333322 24789999999999999999999999999999999999999999
Q ss_pred HHHhhccCCccchhhhhcCCCCcccccCCCCCHHHHHHHh
Q 016179 354 FIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTLTHLL 393 (394)
Q Consensus 354 ~a~~~vk~~~~~l~Nil~~~~i~pEliq~~~~~~~i~~~~ 393 (394)
++|+++|++|+||||||+|++++|||||++||+++|++++
T Consensus 295 iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~ 334 (373)
T PF02684_consen 295 IAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAEL 334 (373)
T ss_pred HHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999876
No 3
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=100.00 E-value=2.8e-73 Score=575.67 Aligned_cols=333 Identities=32% Similarity=0.573 Sum_probs=299.8
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEA 111 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~ 111 (394)
-||+|+|||.|||+||+.++++|+++.|+ +++.|+||++|+++|++..+|+++++++|+.|++++++++++.++++.+.
T Consensus 227 ~kIfI~AGE~SGDlhgA~Li~aLk~~~P~-i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~~~l~~~ 305 (608)
T PRK01021 227 TSCFISAGEHSGDTLGGNLLKEIKALYPD-IHCFGVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKLWYRYRKLYKT 305 (608)
T ss_pred CeEEEEeccccHHHHHHHHHHHHHhcCCC-cEEEEEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHHh
Q 016179 112 ALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRL 191 (394)
Q Consensus 112 i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~~ 191 (394)
+++++||++|++|||+||+++|+++|+++. ++| ++||++||+|||++| |++++++++|+++|+||||+++|++
T Consensus 306 i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi----~ip-viyYVsPqVWAWR~~--Rikki~k~vD~ll~IfPFE~~~y~~ 378 (608)
T PRK01021 306 ILKTNPRTVICIDFPDFHFLLIKKLRKRGY----KGK-IVHYVCPSIWAWRPK--RKTILEKYLDLLLLILPFEQNLFKD 378 (608)
T ss_pred HHhcCCCEEEEeCCCCCCHHHHHHHHhcCC----CCC-EEEEECccceeeCcc--hHHHHHHHhhhheecCccCHHHHHh
Confidence 999999999999999999999999987721 259 589999999999988 9999999999999999999999999
Q ss_pred cCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHH--Hhh
Q 016179 192 NGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVE--LLK 269 (394)
Q Consensus 192 ~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~--~l~ 269 (394)
+|++++|||||+.|.+.. ..++++.++++|++++.++|+++||||.+||++++|.++++++ .+.
T Consensus 379 ~gv~v~yVGHPL~d~i~~--------------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~ 444 (608)
T PRK01021 379 SPLRTVYLGHPLVETISS--------------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA 444 (608)
T ss_pred cCCCeEEECCcHHhhccc--------------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998641 1356778999999989999999999999999999999999998 554
Q ss_pred hhCCCeEEEEEeCCCcChHHHHHHHhhcCC-CCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEEEcCC
Q 016179 270 DSFPELITVIHVAPNRHVENYITGLIQKWP-VPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAH 348 (394)
Q Consensus 270 ~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~-~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~~~ 348 (394)
+ +++++++.++.. .++.+++..++++ .+++++.+ ++-+++|++||+++++|||+|+|++++|+|||++|+++
T Consensus 445 ~---~l~fvvp~a~~~-~~~~i~~~~~~~~~~~~~ii~~---~~~~~~m~aaD~aLaaSGTaTLEaAL~g~PmVV~YK~s 517 (608)
T PRK01021 445 S---THQLLVSSANPK-YDHLILEVLQQEGCLHSHIVPS---QFRYELMRECDCALAKCGTIVLETALNQTPTIVTCQLR 517 (608)
T ss_pred c---CeEEEEecCchh-hHHHHHHHHhhcCCCCeEEecC---cchHHHHHhcCeeeecCCHHHHHHHHhCCCEEEEEecC
Confidence 3 589999887643 3455666555444 24566643 23589999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcc--CCccchhhhhcCCCCccccc--CCCCCHHHHHHHh
Q 016179 349 FLTEWFIRYKAK--IPYISLPNILLDSPIIPEAL--LQACTPDTLTHLL 393 (394)
Q Consensus 349 ~~~~~~a~~~vk--~~~~~l~Nil~~~~i~pEli--q~~~~~~~i~~~~ 393 (394)
++||+++|+++| +||+|||||++|++++|||| |++||||+|++++
T Consensus 518 ~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l 566 (608)
T PRK01021 518 PFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL 566 (608)
T ss_pred HHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH
Confidence 999999999999 59999999999999999999 7999999999863
No 4
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=100.00 E-value=8e-68 Score=515.30 Aligned_cols=309 Identities=27% Similarity=0.432 Sum_probs=271.9
Q ss_pred CceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHH
Q 016179 31 ELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIE 110 (394)
Q Consensus 31 ~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~ 110 (394)
.|||+|+|||.|||+||+.++++|++ + ++++|+||++| ++..+++.+++++|+.|++++++++++.++++.+
T Consensus 1 ~~~i~i~aGE~SGD~~ga~l~~~l~~---~-~~~~G~GG~~m----~~~~~~~~~lsv~G~~evl~~~~~~~~~~~~~~~ 72 (347)
T PRK14089 1 MMKILVSALEPSANLHLKELLKNLPK---D-YELIGIFDKSL----GNPLYDSREFSIMGFVDVLPKLFFAKKAIKEMVE 72 (347)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHhc---C-CEEEEEechHH----HHhcCChHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999987 4 99999999999 6788899999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHH
Q 016179 111 AALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICR 190 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~ 190 (394)
.+ ++||++|++|||+||+++|+++|+.+ +++| ++||++||+|||++| |++++++++|+++++||||.++|
T Consensus 73 ~~--~~pd~~i~iD~p~Fnl~lak~~k~~~----~~i~-viyyi~PqvWAWr~~--R~~~i~k~~d~vl~ifPFE~~~y- 142 (347)
T PRK14089 73 LA--KQADKVLLMDSSSFNIPLAKKIKKAY----PKKE-IIYYILPQVWAWKKG--RAKILEKYCDFLASILPFEVQFY- 142 (347)
T ss_pred Hh--cCCCEEEEeCCCCCCHHHHHHHHhcC----CCCC-EEEEECccceeeCcc--hHHHHHHHHhhhhccCCCCHHHh-
Confidence 84 79999999999999999999998763 2699 589999999999988 99999999999999999999998
Q ss_pred hcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhh
Q 016179 191 LNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKD 270 (394)
Q Consensus 191 ~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~ 270 (394)
|++++|||||++|.+.. . +.. ++ +.++|+++||||++|+++++|.++++++++.+
T Consensus 143 --g~~~~~VGhPl~d~~~~----------------~----~~~--~~-~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~ 197 (347)
T PRK14089 143 --QSKATYVGHPLLDEIKE----------------F----KKD--LD-KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEG 197 (347)
T ss_pred --CCCCEEECCcHHHhhhh----------------h----hhh--cC-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999997531 0 111 23 34799999999999999999999999999986
Q ss_pred hCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEEEcCChH
Q 016179 271 SFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFL 350 (394)
Q Consensus 271 ~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~~~~~ 350 (394)
+. .++++++.++ . +.+++...++. .+.++ ++++++|++||++|++|||+|+|++++|+|||++|+++++
T Consensus 198 ~~--~~~~i~~a~~--~-~~i~~~~~~~~-~~~~~-----~~~~~~m~~aDlal~~SGT~TLE~al~g~P~Vv~Yk~~~l 266 (347)
T PRK14089 198 KE--KILVVPSFFK--G-KDLKEIYGDIS-EFEIS-----YDTHKALLEAEFAFICSGTATLEAALIGTPFVLAYKAKAI 266 (347)
T ss_pred cC--cEEEEeCCCc--H-HHHHHHHhcCC-CcEEe-----ccHHHHHHhhhHHHhcCcHHHHHHHHhCCCEEEEEeCCHH
Confidence 53 6777776643 2 34455444432 34443 3678999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCccchhhhhcC----CCCcccccCCCCCHHHHHHHh
Q 016179 351 TEWFIRYKAKIPYISLPNILLD----SPIIPEALLQACTPDTLTHLL 393 (394)
Q Consensus 351 ~~~~a~~~vk~~~~~l~Nil~~----~~i~pEliq~~~~~~~i~~~~ 393 (394)
+|+++|+++|+||+|+||||+| ++++|||+|++||+++|++++
T Consensus 267 ty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i 313 (347)
T PRK14089 267 DYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAY 313 (347)
T ss_pred HHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHH
Confidence 9999999999999999999999 999999999999999999876
No 5
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=100.00 E-value=2.1e-64 Score=502.50 Aligned_cols=334 Identities=31% Similarity=0.517 Sum_probs=293.2
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEA 111 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~ 111 (394)
.||+|++||||||+++++++++|++++++ ++++|+||+.|+++|++..+++..++++|+.+.++.++++++.++++.++
T Consensus 6 ~ki~i~aGgtsGhi~paal~~~l~~~~~~-~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~~~~ 84 (385)
T TIGR00215 6 PTIALVAGEASGDILGAGLRQQLKEHYPN-ARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEVVQL 84 (385)
T ss_pred CeEEEEeCCccHHHHHHHHHHHHHhcCCC-cEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999955999999998886 99999999999999999889999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHHh
Q 016179 112 ALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRL 191 (394)
Q Consensus 112 i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~~ 191 (394)
+++++||+||++||++||+.++++++.+ ++|+ ++|++|++|+|+.+ |.+.+++++|+++++||++.+.|.+
T Consensus 85 l~~~kPd~vi~~g~~~~~~~~a~aa~~~------gip~-v~~i~P~~waw~~~--~~r~l~~~~d~v~~~~~~e~~~~~~ 155 (385)
T TIGR00215 85 AKQAKPDLLVGIDAPDFNLTKELKKKDP------GIKI-IYYISPQVWAWRKW--RAKKIEKATDFLLAILPFEKAFYQK 155 (385)
T ss_pred HHhcCCCEEEEeCCCCccHHHHHHHhhC------CCCE-EEEeCCcHhhcCcc--hHHHHHHHHhHhhccCCCcHHHHHh
Confidence 9999999999999999999998777655 7995 67889999999865 8778899999999999999999998
Q ss_pred cCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhh
Q 016179 192 NGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS 271 (394)
Q Consensus 192 ~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~ 271 (394)
.|+++.+||||+++.+... ..++.+.|+++|++++.++|+++||||+++++++++.++++++.+.+.
T Consensus 156 ~g~~~~~vGnPv~~~~~~~-------------~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~ 222 (385)
T TIGR00215 156 KNVPCRFVGHPLLDAIPLY-------------KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQ 222 (385)
T ss_pred cCCCEEEECCchhhhcccc-------------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHh
Confidence 8899999999999875421 124567788999999999999999999999988899999999999887
Q ss_pred CCCeEEEEEeCCCcChHHHHHHHhhcC--CCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEEEcCCh
Q 016179 272 FPELITVIHVAPNRHVENYITGLIQKW--PVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHF 349 (394)
Q Consensus 272 ~~~~~~vi~~g~~~~~~~~l~~~~~~~--~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~~~~ 349 (394)
.|+++++++.++... .+.+++....+ +.++.++. .+++++|++||++|++|||+|+|++++|+|+|++|++++
T Consensus 223 ~p~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~v~~~~----~~~~~~l~aADl~V~~SGt~tlEa~a~G~P~Vv~yk~~p 297 (385)
T TIGR00215 223 EPDLRRVLPVVNFKR-RLQFEQIKAEYGPDLQLHLID----GDARKAMFAADAALLASGTAALEAALIKTPMVVGYRMKP 297 (385)
T ss_pred CCCeEEEEEeCCchh-HHHHHHHHHHhCCCCcEEEEC----chHHHHHHhCCEEeecCCHHHHHHHHcCCCEEEEEcCCH
Confidence 888988776654322 23334433333 22344442 478999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCccchhhhhcCCCCcccccCCCCCHHHHHHHh
Q 016179 350 LTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTLTHLL 393 (394)
Q Consensus 350 ~~~~~a~~~vk~~~~~l~Nil~~~~i~pEliq~~~~~~~i~~~~ 393 (394)
++|+++|+++|++|+++||+++|++++||++|++||+++|++++
T Consensus 298 l~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~ 341 (385)
T TIGR00215 298 LTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIAL 341 (385)
T ss_pred HHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999876
No 6
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=100.00 E-value=1.2e-48 Score=388.19 Aligned_cols=334 Identities=38% Similarity=0.649 Sum_probs=287.4
Q ss_pred CceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHH
Q 016179 31 ELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIE 110 (394)
Q Consensus 31 ~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~ 110 (394)
+|||+|++||||||++.+.++++|++.+++ ++++|+|++.|++.+++..+++..+++.|+.+.++.+..+.+.+.++.+
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 79 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAGLIRALKARAPN-LEFVGVGGPRMQAAGCESLFDMEELAVMGLVEVLPRLPRLLKIRRRLKR 79 (380)
T ss_pred CceEEEEecCcCHHHHHHHHHHHHHhcCCC-cEEEEEccHHHHhCCCccccCHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999955599999988786 9999999989999998877888899999998888999899999999999
Q ss_pred HHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHH
Q 016179 111 AALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICR 190 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~ 190 (394)
++++++||+|+++||++++..++..++++ ++|+ +++.+++.|+|.++ +++++.+.+|.+++.++++.+.+.
T Consensus 80 ~l~~~kPdivi~~~~~~~~~~~a~~a~~~------~ip~-i~~~~~~~~~~~~~--~~~~~~~~~d~i~~~~~~~~~~~~ 150 (380)
T PRK00025 80 RLLAEPPDVFIGIDAPDFNLRLEKKLRKA------GIPT-IHYVSPSVWAWRQG--RAFKIAKATDHVLALFPFEAAFYD 150 (380)
T ss_pred HHHHcCCCEEEEeCCCCCCHHHHHHHHHC------CCCE-EEEeCCchhhcCch--HHHHHHHHHhhheeCCccCHHHHH
Confidence 99999999999999877888777666544 7896 45568888998876 888889999999999999999998
Q ss_pred hcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhh
Q 016179 191 LNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKD 270 (394)
Q Consensus 191 ~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~ 270 (394)
+.|+++.++|||+++.+.. ..++.+.+++++++++.++|+++||||+++.+..++.++++++.+.+
T Consensus 151 ~~g~~~~~~G~p~~~~~~~--------------~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~ 216 (380)
T PRK00025 151 KLGVPVTFVGHPLADAIPL--------------LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQ 216 (380)
T ss_pred hcCCCeEEECcCHHHhccc--------------ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999886421 12356678899999888999999999999888878899999999887
Q ss_pred hCCCeEEEEEeCCCcChHHHHHHHhhcC-CCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEEEcCCh
Q 016179 271 SFPELITVIHVAPNRHVENYITGLIQKW-PVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHF 349 (394)
Q Consensus 271 ~~~~~~~vi~~g~~~~~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~~~~ 349 (394)
+.|++++++++++.. .++.+++...+. +.++.++. ++++++|++||++|++||++|+|++++|+|+|++|++++
T Consensus 217 ~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~aDl~v~~sG~~~lEa~a~G~PvI~~~~~~~ 291 (380)
T PRK00025 217 RYPDLRFVLPLVNPK-RREQIEEALAEYAGLEVTLLD----GQKREAMAAADAALAASGTVTLELALLKVPMVVGYKVSP 291 (380)
T ss_pred hCCCeEEEEecCChh-hHHHHHHHHhhcCCCCeEEEc----ccHHHHHHhCCEEEECccHHHHHHHHhCCCEEEEEccCH
Confidence 778899999887422 334455555555 45565543 479999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCccchhhhhcCCCCcccccCCCCCHHHHHHHh
Q 016179 350 LTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTLTHLL 393 (394)
Q Consensus 350 ~~~~~a~~~vk~~~~~l~Nil~~~~i~pEliq~~~~~~~i~~~~ 393 (394)
+++.+++.+.+.++.+++|++++.+++||++|.+++++++++.+
T Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i 335 (380)
T PRK00025 292 LTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARAL 335 (380)
T ss_pred HHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHH
Confidence 99999998888899999999999999999999999999998765
No 7
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=100.00 E-value=1.5e-38 Score=317.48 Aligned_cols=294 Identities=18% Similarity=0.247 Sum_probs=227.8
Q ss_pred EEEeCCchHHHHHHHHHHHHHhcCCC-CeE---EEEecChhhHhccCccccccCcceeccHH-----HhhhhHHH-HHHH
Q 016179 35 FIVAGEVSGDSIGSRLMSAMKKLAPL-PVS---FSGVGGSMMSEQGMKSLFPMEDIAVMGIW-----ELLPHIYK-FRVR 104 (394)
Q Consensus 35 lI~aG~~sGh~~a~~l~~~L~~~~~~-~~~---~~g~gg~~m~~~g~~~~~~~~~l~~~G~~-----~~l~~~~~-~~~~ 104 (394)
|++++|+|.|++|++|+++|+++.|+ ++. ++|.| ..+|+.+++...++..+++.|+. +.++.+++ +.+.
T Consensus 1 l~~snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~-~~~e~~~ip~~g~~~~~~sgg~~~~~~~~~~~~~~~gl~~~ 79 (396)
T TIGR03492 1 LFLSNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEG-RAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGL 79 (396)
T ss_pred CcCCCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCC-HHHhhCCCceeCCCCCCCCCCccCCCHHHHHHHHHhhHHHH
Confidence 46789999999999999999987665 244 44543 57898888865578888888875 56777777 8888
Q ss_pred HHHHHHHHHhc--CCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEE---EeecCcccccc------------CcchH
Q 016179 105 LKETIEAALLF--RPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHF---HYVAPSFWAWK------------GGEAR 167 (394)
Q Consensus 105 ~~~~~~~i~~~--~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~---~yv~~~~wa~~------------~g~~r 167 (394)
..+..++++++ +||+|+++| +|...+++++. ++|+++ |+ ++..|... +| .
T Consensus 80 ~~~~~~~~~~~~~~p~~v~~~G--g~v~~~aA~~~--------~~p~~~~~~~e-sn~~~~~~~~~~~~~~~~~~~G--~ 146 (396)
T TIGR03492 80 TLGQWRALRKWAKKGDLIVAVG--DIVPLLFAWLS--------GKPYAFVGTAK-SDYYWESGPRRSPSDEYHRLEG--S 146 (396)
T ss_pred HHHHHHHHHHHhhcCCEEEEEC--cHHHHHHHHHc--------CCCceEEEeec-cceeecCCCCCccchhhhccCC--C
Confidence 99999999999 999999997 34445555543 789877 76 55553211 33 4
Q ss_pred H------HHH-HHhhhheeecCcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCC
Q 016179 168 L------KNL-AAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGA 240 (394)
Q Consensus 168 ~------~~l-~~~~d~v~~~~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~ 240 (394)
+ +++ +++||.+|+.++++.++|.++|++++|||||++|.+.. .++ .+++++.
T Consensus 147 ~~~p~e~n~l~~~~a~~v~~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~---------------~~~------~~l~~~~ 205 (396)
T TIGR03492 147 LYLPWERWLMRSRRCLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEP---------------PER------KPLLTGR 205 (396)
T ss_pred ccCHHHHHHhhchhhCEEeCCCHHHHHHHHHCCCeEEEeCcCHHhcCcc---------------ccc------cccCCCC
Confidence 4 554 89999999999999999999999999999999998642 111 1667788
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC----------------CEEE
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV----------------PSIL 304 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~----------------~v~~ 304 (394)
++|+++||||++|+.+.+|.++++++.+.++ ++++|+++++++.+.+ .+++.+.+.+. ++.+
T Consensus 206 ~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~~~~v~~~~~~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v 283 (396)
T TIGR03492 206 FRIALLPGSRPPEAYRNLKLLLRALEALPDS-QPFVFLAAIVPSLSLE-KLQAILEDLGWQLEGSSEDQTSLFQKGTLEV 283 (396)
T ss_pred CEEEEECCCCHHHHHccHHHHHHHHHHHhhC-CCeEEEEEeCCCCCHH-HHHHHHHhcCceecCCccccchhhccCceEE
Confidence 9999999999999888899999999999766 7899999997655543 34444432221 1445
Q ss_pred ecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEEE-cCChHHHHHHHhhccC--Cccchh
Q 016179 305 VPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAY-RAHFLTEWFIRYKAKI--PYISLP 367 (394)
Q Consensus 305 ~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y-~~~~~~~~~a~~~vk~--~~~~l~ 367 (394)
..+ .++|+++|++||++|++|||+|+|++++|+|+|++| +.+++|+.++++..+. .++.++
T Consensus 284 ~~~--~~~~~~~l~~ADlvI~rSGt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~ 347 (396)
T TIGR03492 284 LLG--RGAFAEILHWADLGIAMAGTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLA 347 (396)
T ss_pred Eec--hHhHHHHHHhCCEEEECcCHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecC
Confidence 444 468999999999999999999999999999999997 9999998887765443 455544
No 8
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=100.00 E-value=1.1e-37 Score=306.92 Aligned_cols=302 Identities=12% Similarity=0.118 Sum_probs=217.0
Q ss_pred ceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecC-hhhHhccCcc-ccccCcceeccHH-----HhhhhHHHHHH
Q 016179 32 LRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGG-SMMSEQGMKS-LFPMEDIAVMGIW-----ELLPHIYKFRV 103 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg-~~m~~~g~~~-~~~~~~l~~~G~~-----~~l~~~~~~~~ 103 (394)
+||+|++||||||++ |.+++++|++++. ++..+|. ..++...++. .+++..++..|+. ..++.+.++.+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~---~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNW---DISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMK 78 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCC---EEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHH
Confidence 579999999999999 9999999998544 4444443 3566554443 2444445444432 34556666777
Q ss_pred HHHHHHHHHHhcCCCEEEEeC-CCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHH-HHhhhheeec
Q 016179 104 RLKETIEAALLFRPHAVVTVD-SKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNL-AAFVDHILCI 181 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~-~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l-~~~~d~v~~~ 181 (394)
...++.+++++++||+|+++| |.++|..+++++. ++|+++|+ ++. .+| ++|++ ++++|++++.
T Consensus 79 ~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~--------~~p~~i~e-~n~----~~g--~~nr~~~~~a~~v~~~ 143 (352)
T PRK12446 79 GVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLN--------RVPVLLHE-SDM----TPG--LANKIALRFASKIFVT 143 (352)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHc--------CCCEEEEC-CCC----Ccc--HHHHHHHHhhCEEEEE
Confidence 888999999999999999997 7778888887765 78988776 554 356 88875 9999999999
Q ss_pred CcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHH-HHhhHHH
Q 016179 182 LPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQE-VARMLPI 260 (394)
Q Consensus 182 ~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~e-i~~~l~~ 260 (394)
||...+.+.+ .++++||+|+|+.+.. .++++.++.+++++++++||++|||+|+. +++.
T Consensus 144 f~~~~~~~~~--~k~~~tG~Pvr~~~~~---------------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~--- 203 (352)
T PRK12446 144 FEEAAKHLPK--EKVIYTGSPVREEVLK---------------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINET--- 203 (352)
T ss_pred ccchhhhCCC--CCeEEECCcCCccccc---------------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHH---
Confidence 9887666642 3578999999998742 23456677899999999999999999974 5554
Q ss_pred HHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHH-HHHHcCC
Q 016179 261 FAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARL 339 (394)
Q Consensus 261 ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tl-Ea~a~G~ 339 (394)
+.+++..+. .+++++++||.+ ++++.... .. ++.++ +|..++|+++|++||++||++|++|+ |++++|+
T Consensus 204 ~~~~l~~l~---~~~~vv~~~G~~-~~~~~~~~----~~-~~~~~-~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~ 273 (352)
T PRK12446 204 VREALPELL---LKYQIVHLCGKG-NLDDSLQN----KE-GYRQF-EYVHGELPDILAITDFVISRAGSNAIFEFLTLQK 273 (352)
T ss_pred HHHHHHhhc---cCcEEEEEeCCc-hHHHHHhh----cC-CcEEe-cchhhhHHHHHHhCCEEEECCChhHHHHHHHcCC
Confidence 334444443 248999999975 34443322 11 33444 33236899999999999999999997 9999999
Q ss_pred CEEEEEcC-ChH-HHHH--HHhhccCCccchhhhhcCCCCcccccCCCCCHHHHHHHh
Q 016179 340 PCVVAYRA-HFL-TEWF--IRYKAKIPYISLPNILLDSPIIPEALLQACTPDTLTHLL 393 (394)
Q Consensus 340 P~Iv~y~~-~~~-~~~~--a~~~vk~~~~~l~Nil~~~~i~pEliq~~~~~~~i~~~~ 393 (394)
|+|++.-. ... .++. +++ +.+..+.+++.|+++++++|.+.+
T Consensus 274 P~I~iP~~~~~~~~~Q~~Na~~------------l~~~g~~~~l~~~~~~~~~l~~~l 319 (352)
T PRK12446 274 PMLLIPLSKFASRGDQILNAES------------FERQGYASVLYEEDVTVNSLIKHV 319 (352)
T ss_pred CEEEEcCCCCCCCchHHHHHHH------------HHHCCCEEEcchhcCCHHHHHHHH
Confidence 99987211 111 1222 333 334777888888888888887654
No 9
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.5e-36 Score=292.94 Aligned_cols=282 Identities=15% Similarity=0.192 Sum_probs=203.6
Q ss_pred ceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecC-hhhHhccCcc-ccccCcceeccH-----HHhhhhHHHHHH
Q 016179 32 LRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGG-SMMSEQGMKS-LFPMEDIAVMGI-----WELLPHIYKFRV 103 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg-~~m~~~g~~~-~~~~~~l~~~G~-----~~~l~~~~~~~~ 103 (394)
|+|++++||||||++ |.+++++|.+++. + ++.+.|. ..|++.-.+. ..++..+++.++ ...++...++++
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~-~-~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGW-E-QVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLK 78 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCc-c-EEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHH
Confidence 578999999999999 9999999999876 2 5555543 4565544432 233444444443 345666778899
Q ss_pred HHHHHHHHHHhcCCCEEEEeC-CCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHH-HHHhhhheeec
Q 016179 104 RLKETIEAALLFRPHAVVTVD-SKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKN-LAAFVDHILCI 181 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~-~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~-l~~~~d~v~~~ 181 (394)
.+.++.+++++++||+|+++| |+..|..+|+.+. ++|+++|+ ++. .+| ++|+ ++++++.+++.
T Consensus 79 ~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~--------~iPv~ihE-qn~----~~G--~ank~~~~~a~~V~~~ 143 (357)
T COG0707 79 GVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLL--------GIPVIIHE-QNA----VPG--LANKILSKFAKKVASA 143 (357)
T ss_pred HHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhC--------CCCEEEEe-cCC----Ccc--hhHHHhHHhhceeeec
Confidence 999999999999999999997 7888988887753 79998887 555 466 8877 49999999999
Q ss_pred CcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHH-HHhhHHH
Q 016179 182 LPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQE-VARMLPI 260 (394)
Q Consensus 182 ~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~e-i~~~l~~ 260 (394)
|+.......+ .++++||+|+++++.+ . .....+.... .++++|+++|||+|+. +++.
T Consensus 144 f~~~~~~~~~--~~~~~tG~Pvr~~~~~-~--------------~~~~~~~~~~--~~~~~ilV~GGS~Ga~~ln~~--- 201 (357)
T COG0707 144 FPKLEAGVKP--ENVVVTGIPVRPEFEE-L--------------PAAEVRKDGR--LDKKTILVTGGSQGAKALNDL--- 201 (357)
T ss_pred cccccccCCC--CceEEecCcccHHhhc-c--------------chhhhhhhcc--CCCcEEEEECCcchhHHHHHH---
Confidence 9873332221 2488999999998863 1 1122222222 2789999999999985 4554
Q ss_pred HHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHH-HHHHcCC
Q 016179 261 FAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARL 339 (394)
Q Consensus 261 ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tl-Ea~a~G~ 339 (394)
+.+++..+.+ +++++++||++. +++ +.....+.+. +++.++ .+||.++|++||++|||||++|+ |++++|+
T Consensus 202 v~~~~~~l~~---~~~v~~~~G~~~-~~~-~~~~~~~~~~-~~v~~f--~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~ 273 (357)
T COG0707 202 VPEALAKLAN---RIQVIHQTGKND-LEE-LKSAYNELGV-VRVLPF--IDDMAALLAAADLVISRAGALTIAELLALGV 273 (357)
T ss_pred HHHHHHHhhh---CeEEEEEcCcch-HHH-HHHHHhhcCc-EEEeeH--HhhHHHHHHhccEEEeCCcccHHHHHHHhCC
Confidence 4455555543 699999999864 444 4444444443 666654 58999999999999999999999 9999999
Q ss_pred CEEEEEcCCh---HHHHHHHhhcc
Q 016179 340 PCVVAYRAHF---LTEWFIRYKAK 360 (394)
Q Consensus 340 P~Iv~y~~~~---~~~~~a~~~vk 360 (394)
|+|+++..+. -.+.=|+.+.+
T Consensus 274 P~IliP~p~~~~~~Q~~NA~~l~~ 297 (357)
T COG0707 274 PAILVPYPPGADGHQEYNAKFLEK 297 (357)
T ss_pred CEEEeCCCCCccchHHHHHHHHHh
Confidence 9998754443 22223676664
No 10
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.96 E-value=8.4e-28 Score=240.26 Aligned_cols=267 Identities=9% Similarity=0.146 Sum_probs=175.8
Q ss_pred CCceEEEEeCC-chHHHH-HHHHHHHHHhcCCCCeEE--EEe---cChhhHhccCccccccCcceeccHHHhhhhHHHHH
Q 016179 30 GELRVFIVAGE-VSGDSI-GSRLMSAMKKLAPLPVSF--SGV---GGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFR 102 (394)
Q Consensus 30 ~~~kIlI~aG~-~sGh~~-a~~l~~~L~~~~~~~~~~--~g~---gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~ 102 (394)
..|||||.+++ ++||.+ |.+|.++|.++.++++++ +.. .++.+... ...+|...+++.+.++
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----------~~~~Y~~~~~~~p~~y 72 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSI-----------CKKWYINSFKYFRNMY 72 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHH-----------HHHHHHHHHHHhHHHH
Confidence 56789998888 668999 557999998775421332 221 12222111 1112222222222211
Q ss_pred ------------------HHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeE---EEeecCccccc
Q 016179 103 ------------------VRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAH---FHYVAPSFWAW 161 (394)
Q Consensus 103 ------------------~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~---~~yv~~~~wa~ 161 (394)
..+.++.+++++++||+||++ +|.. .+..+++... .++|++ ++|..++.|.+
T Consensus 73 ~~~y~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~-~p~~---~~~~l~~~~~---~~iP~~~v~td~~~~~~w~~ 145 (391)
T PRK13608 73 KGFYYSRPDKLDKCFYKYYGLNKLINLLIKEKPDLILLT-FPTP---VMSVLTEQFN---INIPVATVMTDYRLHKNWIT 145 (391)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHHHHHHHHhCcCEEEEC-CcHH---HHHHHHHhcC---CCCCEEEEeCCCCccccccc
Confidence 134678899999999999986 4422 2334443322 168864 33444555655
Q ss_pred cCcchHHHHHHHhhhheeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCC
Q 016179 162 KGGEARLKNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPS 238 (394)
Q Consensus 162 ~~g~~r~~~l~~~~d~v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~ 238 (394)
+ .+|++++.++..++.+.+.|++ +.++|+|+++.|.+ ..++.+.++++|+++
T Consensus 146 ~-----------~~d~~~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~--------------~~~~~~~~~~~~l~~ 200 (391)
T PRK13608 146 P-----------YSTRYYVATKETKQDFIDVGIDPSTVKVTGIPIDNKFET--------------PIDQKQWLIDNNLDP 200 (391)
T ss_pred C-----------CCCEEEECCHHHHHHHHHcCCCHHHEEEECeecChHhcc--------------cccHHHHHHHcCCCC
Confidence 3 6999999999999999888875 67899999887642 123556778899999
Q ss_pred CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHH
Q 016179 239 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFS 318 (394)
Q Consensus 239 ~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~ 318 (394)
+.++|++++||+|.. +.+..+++++ .+..+++++++++|++..+.+.+++.... ..++.++ || .++|+++|+
T Consensus 201 ~~~~ilv~~G~lg~~--k~~~~li~~~---~~~~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~-G~-~~~~~~~~~ 272 (391)
T PRK13608 201 DKQTILMSAGAFGVS--KGFDTMITDI---LAKSANAQVVMICGKSKELKRSLTAKFKS-NENVLIL-GY-TKHMNEWMA 272 (391)
T ss_pred CCCEEEEECCCcccc--hhHHHHHHHH---HhcCCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEE-ec-cchHHHHHH
Confidence 999999999999831 1233344442 23346789989988764333334433322 2256655 55 589999999
Q ss_pred HcccceehhhHHHH-HHHHcCCCEEEEEcC
Q 016179 319 ASRVALCTSGTVAV-ELQLARLPCVVAYRA 347 (394)
Q Consensus 319 ~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~ 347 (394)
+||++|+++|+.|+ ||+++|+|+|++.+.
T Consensus 273 ~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~ 302 (391)
T PRK13608 273 SSQLMITKPGGITISEGLARCIPMIFLNPA 302 (391)
T ss_pred hhhEEEeCCchHHHHHHHHhCCCEEECCCC
Confidence 99999999999997 999999999986544
No 11
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=8.7e-27 Score=231.75 Aligned_cols=277 Identities=13% Similarity=0.148 Sum_probs=177.5
Q ss_pred CCCceEEEEeCCch-HHHH-HHHHHHHHHhcCCCCeEEEEec----ChhhHhccCcccc--ccCc-ceeccHH----H--
Q 016179 29 DGELRVFIVAGEVS-GDSI-GSRLMSAMKKLAPLPVSFSGVG----GSMMSEQGMKSLF--PMED-IAVMGIW----E-- 93 (394)
Q Consensus 29 ~~~~kIlI~aG~~s-Gh~~-a~~l~~~L~~~~~~~~~~~g~g----g~~m~~~g~~~~~--~~~~-l~~~G~~----~-- 93 (394)
.+.|||+|.++++| ||.. |.+|+++|++++++ +.++.-. ++.+... ....| .... -...++. +
T Consensus 2 ~~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~-~~~~~d~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~ 79 (380)
T PRK13609 2 IKNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIK-DVIVCDLFGESHPVITEI-TKYLYLKSYTIGKELYRLFYYGVEKI 79 (380)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCC-cEEEEEhHHhcchHHHHH-HHHHHHHHHHHhHHHHHHHHhccCcc
Confidence 35789999988855 9999 77899999987664 3333211 1111110 00000 0000 0000100 0
Q ss_pred -hhhhHH-HHHHHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEE---EeecCccccccCcchHH
Q 016179 94 -LLPHIY-KFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHF---HYVAPSFWAWKGGEARL 168 (394)
Q Consensus 94 -~l~~~~-~~~~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~---~yv~~~~wa~~~g~~r~ 168 (394)
...... .......++.+++++++||+||++ +|.+++..+++ ... .++|++. +|..+..|.|+
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~-~~~~~~~~~~~---~~~---~~ip~~~~~td~~~~~~~~~~------ 146 (380)
T PRK13609 80 YDKKIFSWYANFGRKRLKLLLQAEKPDIVINT-FPIIAVPELKK---QTG---ISIPTYNVLTDFCLHKIWVHR------ 146 (380)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcCEEEEc-ChHHHHHHHHH---hcC---CCCCeEEEeCCCCCCcccccC------
Confidence 000111 112235778999999999999985 55455443322 211 1688531 34455667664
Q ss_pred HHHHHhhhheeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEE
Q 016179 169 KNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL 245 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Ill 245 (394)
.+|++++.++..++.+.+.|++ +.++|+|+.+.+.. ..++...++++|++++++++++
T Consensus 147 -----~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~--------------~~~~~~~~~~~~l~~~~~~il~ 207 (380)
T PRK13609 147 -----EVDRYFVATDHVKKVLVDIGVPPEQVVETGIPIRSSFEL--------------KINPDIIYNKYQLCPNKKILLI 207 (380)
T ss_pred -----CCCEEEECCHHHHHHHHHcCCChhHEEEECcccChHHcC--------------cCCHHHHHHHcCCCCCCcEEEE
Confidence 5899999999999999888874 77899999876642 1234567889999998899999
Q ss_pred ECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHccccee
Q 016179 246 LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALC 325 (394)
Q Consensus 246 lgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~ 325 (394)
+||+++.. +.+..++++ +.+ .+++++++++|++...++.+++...+.+.+++++ |+ .++++++|++||++|+
T Consensus 208 ~~G~~~~~--k~~~~li~~---l~~-~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~-g~-~~~~~~l~~~aD~~v~ 279 (380)
T PRK13609 208 MAGAHGVL--GNVKELCQS---LMS-VPDLQVVVVCGKNEALKQSLEDLQETNPDALKVF-GY-VENIDELFRVTSCMIT 279 (380)
T ss_pred EcCCCCCC--cCHHHHHHH---Hhh-CCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEE-ec-hhhHHHHHHhccEEEe
Confidence 99999842 223334443 333 3679999888865434455655555444467777 55 5789999999999999
Q ss_pred hhhHHHH-HHHHcCCCEEEEEcC
Q 016179 326 TSGTVAV-ELQLARLPCVVAYRA 347 (394)
Q Consensus 326 ~SGt~tl-Ea~a~G~P~Iv~y~~ 347 (394)
++|+.|+ ||+++|+|+|+..+.
T Consensus 280 ~~gg~t~~EA~a~g~PvI~~~~~ 302 (380)
T PRK13609 280 KPGGITLSEAAALGVPVILYKPV 302 (380)
T ss_pred CCCchHHHHHHHhCCCEEECCCC
Confidence 9999997 999999998764333
No 12
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.94 E-value=5.4e-25 Score=215.51 Aligned_cols=266 Identities=19% Similarity=0.265 Sum_probs=174.7
Q ss_pred ceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChhh------HhccCccc-cccCcceeccHHHhhhhHHHHHH
Q 016179 32 LRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMM------SEQGMKSL-FPMEDIAVMGIWELLPHIYKFRV 103 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m------~~~g~~~~-~~~~~l~~~G~~~~l~~~~~~~~ 103 (394)
|||+|++||+|||++ +..++++|.+++.+ +.+++ ++.. +..|++.. .+.......++.+.++....++.
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~e-V~vv~--~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 77 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVE-VLWLG--TKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLK 77 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCE-EEEEe--CCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHH
Confidence 689999999999999 55899999987664 66654 2221 12233321 12222222345567777777788
Q ss_pred HHHHHHHHHHhcCCCEEEEeC-CCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHH-HHHHHhhhheeec
Q 016179 104 RLKETIEAALLFRPHAVVTVD-SKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARL-KNLAAFVDHILCI 181 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~-~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~-~~l~~~~d~v~~~ 181 (394)
.+.++.+++++++||+|++++ ++.+...+++++. ++|++ ++. |.+.++ +. +.+.+.+|++++.
T Consensus 78 ~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~--------~~p~v-~~~----~~~~~~--~~~~~~~~~~d~ii~~ 142 (348)
T TIGR01133 78 AVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLL--------GIPLF-HHE----QNAVPG--LTNKLLSRFAKKVLIS 142 (348)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHc--------CCCEE-EEC----CCCCcc--HHHHHHHHHhCeeEEC
Confidence 888999999999999999874 2222233332221 67864 432 222333 45 3467889999999
Q ss_pred CcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHH
Q 016179 182 LPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIF 261 (394)
Q Consensus 182 ~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~l 261 (394)
++++++.+ +..++|||+.+.+... . ..+++++++++.++|+++||+++.+. +...+
T Consensus 143 ~~~~~~~~-----~~~~i~n~v~~~~~~~---------------~--~~~~~~~~~~~~~~i~~~gg~~~~~~--~~~~l 198 (348)
T TIGR01133 143 FPGAKDHF-----EAVLVGNPVRQEIRSL---------------P--VPRERFGLREGKPTILVLGGSQGAKI--LNELV 198 (348)
T ss_pred chhHhhcC-----CceEEcCCcCHHHhcc---------------c--chhhhcCCCCCCeEEEEECCchhHHH--HHHHH
Confidence 99887665 3478999997765321 1 11346788888899999999998642 22234
Q ss_pred HHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHH-HHHHcCCC
Q 016179 262 AKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARLP 340 (394)
Q Consensus 262 l~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tl-Ea~a~G~P 340 (394)
.++++.+.+ ++.++++++|++. . +.+++...+.+.. ..+. +...+++++|++||++|++||+.|+ |++++|+|
T Consensus 199 ~~a~~~l~~--~~~~~~~~~g~~~-~-~~l~~~~~~~~l~-~~v~-~~~~~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~P 272 (348)
T TIGR01133 199 PKALAKLAE--KGIQIVHQTGKND-L-EKVKNVYQELGIE-AIVT-FIDENMAAAYAAADLVISRAGASTVAELAAAGVP 272 (348)
T ss_pred HHHHHHHhh--cCcEEEEECCcch-H-HHHHHHHhhCCce-EEec-CcccCHHHHHHhCCEEEECCChhHHHHHHHcCCC
Confidence 567777754 3567766666542 3 4455555554432 1221 1123899999999999999998887 99999999
Q ss_pred EEEEE
Q 016179 341 CVVAY 345 (394)
Q Consensus 341 ~Iv~y 345 (394)
+|++.
T Consensus 273 vv~~~ 277 (348)
T TIGR01133 273 AILIP 277 (348)
T ss_pred EEEee
Confidence 99864
No 13
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.93 E-value=3.9e-24 Score=213.14 Aligned_cols=206 Identities=14% Similarity=0.196 Sum_probs=143.2
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC---chHHHHHHHHHhccccCCCCCeEE---Ee-ecCccccccCcchHHHHHHHhhhhe
Q 016179 106 KETIEAALLFRPHAVVTVDSKG---FSFRLLKQLRARYSHERLNGPAHF---HY-VAPSFWAWKGGEARLKNLAAFVDHI 178 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~~~---f~~~la~~l~~~~~~~~~~ip~~~---~y-v~~~~wa~~~g~~r~~~l~~~~d~v 178 (394)
.++.++|++++||+|+++ +|. +++.+++.+++... .++|+++ ++ ..+..|. .+.+|.+
T Consensus 90 ~~l~~~i~~~~pDvIi~t-hp~~~~~~~~~l~~~~~~~~---~~~p~~~~~tD~~~~~~~w~-----------~~~~d~~ 154 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSV-HPLMQHVPLRVLRWQGKELG---KKIPFTTVVTDLGTCHPTWF-----------HKGVTRC 154 (382)
T ss_pred HHHHHHHHhcCcCEEEEe-CcCcccCHHHHHHHHhhccC---CCCCEEEEECCCCCcCcccc-----------cCCCCEE
Confidence 567789999999999997 432 24555555442211 2678543 22 1233343 3479999
Q ss_pred eecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHH
Q 016179 179 LCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVA 255 (394)
Q Consensus 179 ~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~ 255 (394)
++.++..++.+.++|++ ++++|+|+.+.+... ..+++++|+++|++++.++|+++||+.|..
T Consensus 155 ~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~-------------~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~-- 219 (382)
T PLN02605 155 FCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARA-------------VRPKDELRRELGMDEDLPAVLLMGGGEGMG-- 219 (382)
T ss_pred EECCHHHHHHHHHcCCCHHHEEEECcccCHhhccC-------------CCCHHHHHHHcCCCCCCcEEEEECCCcccc--
Confidence 99999999888888875 788999998766421 134677899999999999999999999842
Q ss_pred hhHHHHHHHHHHhh----hhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHH
Q 016179 256 RMLPIFAKTVELLK----DSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVA 331 (394)
Q Consensus 256 ~~l~~ll~a~~~l~----~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~t 331 (394)
. +..+++++..+. ...++.++++++|.+..+++.+++. ..+.+++++ |+ .++|+++|++||++|++||+.|
T Consensus 220 ~-~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~--~~~~~v~~~-G~-~~~~~~l~~aaDv~V~~~g~~t 294 (382)
T PLN02605 220 P-LEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESR--DWKIPVKVR-GF-VTNMEEWMGACDCIITKAGPGT 294 (382)
T ss_pred c-HHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhh--cccCCeEEE-ec-cccHHHHHHhCCEEEECCCcch
Confidence 2 223344444322 1135688888888764444444432 223356655 55 5899999999999999999988
Q ss_pred H-HHHHcCCCEEEEEc
Q 016179 332 V-ELQLARLPCVVAYR 346 (394)
Q Consensus 332 l-Ea~a~G~P~Iv~y~ 346 (394)
+ ||++||+|+|+...
T Consensus 295 i~EAma~g~PvI~~~~ 310 (382)
T PLN02605 295 IAEALIRGLPIILNGY 310 (382)
T ss_pred HHHHHHcCCCEEEecC
Confidence 7 99999999998654
No 14
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.93 E-value=6.6e-23 Score=202.04 Aligned_cols=270 Identities=19% Similarity=0.246 Sum_probs=174.9
Q ss_pred ceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChh----hHhccCccc-cccCcceeccHHHhhhhHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSM----MSEQGMKSL-FPMEDIAVMGIWELLPHIYKFRVRL 105 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~----m~~~g~~~~-~~~~~l~~~G~~~~l~~~~~~~~~~ 105 (394)
|||+|+++|.|||.+ +..++++|++++.+ +.+++..+.. .++.|++.. ++...+.-.+....++....+...+
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~e-v~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWE-VLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGV 80 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCE-EEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHH
Confidence 899999999999999 77999999987664 6666554311 122233321 1111111122345566677778888
Q ss_pred HHHHHHHHhcCCCEEEEeC-CCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHH-HHHhhhheeecCc
Q 016179 106 KETIEAALLFRPHAVVTVD-SKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKN-LAAFVDHILCILP 183 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~-~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~-l~~~~d~v~~~~p 183 (394)
.++.+++++++||+|++++ ++.+...++++. . ++|++.+. .. +.++ +.++ +.+.+|.+++.++
T Consensus 81 ~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~--~------~~p~v~~~--~~---~~~~--~~~r~~~~~~d~ii~~~~ 145 (357)
T PRK00726 81 LQARKILKRFKPDVVVGFGGYVSGPGGLAARL--L------GIPLVIHE--QN---AVPG--LANKLLARFAKKVATAFP 145 (357)
T ss_pred HHHHHHHHhcCCCEEEECCCcchhHHHHHHHH--c------CCCEEEEc--CC---CCcc--HHHHHHHHHhchheECch
Confidence 8999999999999999986 333333333222 1 67864432 22 2233 5555 5778999999887
Q ss_pred ccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHH
Q 016179 184 NEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAK 263 (394)
Q Consensus 184 ~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~ 263 (394)
.... ...+.+++++|||+.++... + ...+.+++++++.++|+++||+++.+- ....+.+
T Consensus 146 ~~~~--~~~~~~i~vi~n~v~~~~~~--~---------------~~~~~~~~~~~~~~~i~~~gg~~~~~~--~~~~l~~ 204 (357)
T PRK00726 146 GAFP--EFFKPKAVVTGNPVREEILA--L---------------AAPPARLAGREGKPTLLVVGGSQGARV--LNEAVPE 204 (357)
T ss_pred hhhh--ccCCCCEEEECCCCChHhhc--c---------------cchhhhccCCCCCeEEEEECCcHhHHH--HHHHHHH
Confidence 4421 12334689999999876532 0 112245677778889999999987542 2233447
Q ss_pred HHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHH-HHHHcCCCEE
Q 016179 264 TVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARLPCV 342 (394)
Q Consensus 264 a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tl-Ea~a~G~P~I 342 (394)
+++++.+. + ..++++|... .++ +.+... .+.++.+. ++ .++++++|++||++|+.||+.|+ |++++|+|+|
T Consensus 205 a~~~~~~~-~--~~~~~~G~g~-~~~-~~~~~~-~~~~v~~~-g~-~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv 276 (357)
T PRK00726 205 ALALLPEA-L--QVIHQTGKGD-LEE-VRAAYA-AGINAEVV-PF-IDDMAAAYAAADLVICRAGASTVAELAAAGLPAI 276 (357)
T ss_pred HHHHhhhC-c--EEEEEcCCCc-HHH-HHHHhh-cCCcEEEe-eh-HhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEE
Confidence 77777542 2 3445555533 333 333344 55556655 54 47899999999999999998887 9999999999
Q ss_pred EEEc
Q 016179 343 VAYR 346 (394)
Q Consensus 343 v~y~ 346 (394)
++..
T Consensus 277 ~~~~ 280 (357)
T PRK00726 277 LVPL 280 (357)
T ss_pred EecC
Confidence 8743
No 15
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.91 E-value=3.5e-22 Score=195.79 Aligned_cols=269 Identities=18% Similarity=0.228 Sum_probs=176.7
Q ss_pred eEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCcc-ccccCcceecc-----HHHhhhhHHHHHHHH
Q 016179 33 RVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKS-LFPMEDIAVMG-----IWELLPHIYKFRVRL 105 (394)
Q Consensus 33 kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~-~~~~~~l~~~G-----~~~~l~~~~~~~~~~ 105 (394)
+|+|++||+|||+. +..++++|.+.+.+ +.+++.... +....++. .+++..++..+ ..+.++.+..+...+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~e-v~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAE-VLFLGTKRG-LEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGV 78 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCE-EEEEECCCc-chhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHH
Confidence 58999999999999 77999999988775 777655432 21111111 12222333322 234444555556677
Q ss_pred HHHHHHHHhcCCCEEEEeC-CCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHH-HHHhhhheeecCc
Q 016179 106 KETIEAALLFRPHAVVTVD-SKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKN-LAAFVDHILCILP 183 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~-~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~-l~~~~d~v~~~~p 183 (394)
.++.+++++++||+|++++ ++.+...++++. . ++|+++ +..+. | ++ ..++ +.+++|++++.++
T Consensus 79 ~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~--~------~~p~v~-~~~~~-~---~~--~~~~~~~~~~~~vi~~s~ 143 (350)
T cd03785 79 LQARKILKKFKPDVVVGFGGYVSGPVGLAAKL--L------GIPLVI-HEQNA-V---PG--LANRLLARFADRVALSFP 143 (350)
T ss_pred HHHHHHHHhcCCCEEEECCCCcchHHHHHHHH--h------CCCEEE-EcCCC-C---cc--HHHHHHHHhhCEEEEcch
Confidence 7888999999999999875 233333333322 1 678644 32322 2 22 4444 4677999999999
Q ss_pred ccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHH
Q 016179 184 NEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAK 263 (394)
Q Consensus 184 ~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~ 263 (394)
...+.+ .+.++.++|||+...+... .. .+++++++++.++|++++|+.+.. .....+.+
T Consensus 144 ~~~~~~--~~~~~~~i~n~v~~~~~~~----------------~~-~~~~~~~~~~~~~i~~~~g~~~~~--~~~~~l~~ 202 (350)
T cd03785 144 ETAKYF--PKDKAVVTGNPVREEILAL----------------DR-ERARLGLRPGKPTLLVFGGSQGAR--AINEAVPE 202 (350)
T ss_pred hhhhcC--CCCcEEEECCCCchHHhhh----------------hh-hHHhcCCCCCCeEEEEECCcHhHH--HHHHHHHH
Confidence 877652 2346889999997664321 11 267788888889999999988752 22233456
Q ss_pred HHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHH-HHHHcCCCEE
Q 016179 264 TVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARLPCV 342 (394)
Q Consensus 264 a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tl-Ea~a~G~P~I 342 (394)
+++.+.+ ++.++++++|+. .. +.+++...+...++++. ++ .+++.++|+.||++|+.||+.|+ |++++|+|+|
T Consensus 203 a~~~l~~--~~~~~~~i~G~g-~~-~~l~~~~~~~~~~v~~~-g~-~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv 276 (350)
T cd03785 203 ALAELLR--KRLQVIHQTGKG-DL-EEVKKAYEELGVNYEVF-PF-IDDMAAAYAAADLVISRAGASTVAELAALGLPAI 276 (350)
T ss_pred HHHHhhc--cCeEEEEEcCCc-cH-HHHHHHHhccCCCeEEe-eh-hhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEE
Confidence 7776652 467777777764 33 34555554443467666 44 47999999999999999998886 9999999998
Q ss_pred EEE
Q 016179 343 VAY 345 (394)
Q Consensus 343 v~y 345 (394)
++.
T Consensus 277 ~~~ 279 (350)
T cd03785 277 LIP 279 (350)
T ss_pred Eee
Confidence 764
No 16
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.86 E-value=1.6e-19 Score=177.94 Aligned_cols=286 Identities=14% Similarity=0.042 Sum_probs=174.5
Q ss_pred eEEEEeCCchHHHHHHHHHHHHHhcCCC-CeEEEEecChhhH----hccCcc----ccccCcceeccHHHhhhhHHHHHH
Q 016179 33 RVFIVAGEVSGDSIGSRLMSAMKKLAPL-PVSFSGVGGSMMS----EQGMKS----LFPMEDIAVMGIWELLPHIYKFRV 103 (394)
Q Consensus 33 kIlI~aG~~sGh~~a~~l~~~L~~~~~~-~~~~~g~gg~~m~----~~g~~~----~~~~~~l~~~G~~~~l~~~~~~~~ 103 (394)
||++++|..++-...+.++++|++. ++ ++.++.. |.++. ...... .++ ..+...|-. .........
T Consensus 1 ~i~~~~gtr~~~~~~~pl~~~l~~~-~~~~~~~~~t-g~h~~~~~~~~~~~~~~~~~~~-~~l~~~~~~--~~~~~~~~~ 75 (363)
T cd03786 1 KILVVTGTRPEYIKLAPLIRALKKD-PGFELVLVVT-GQHYDMEMGVTFFEILFIIKPD-YDLLLGSDS--QSLGAQTAG 75 (363)
T ss_pred CEEEEEecCHHHHHHHHHHHHHhcC-CCCCEEEEEe-CCCCChhhhHHHHHhhCCCCCC-EEEecCCCC--CCHHHHHHH
Confidence 6899999999999999999999975 33 2334444 44321 111111 111 123333221 112223445
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCc-ccc-ccCcchHHHHHHHhhhheeec
Q 016179 104 RLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPS-FWA-WKGGEARLKNLAAFVDHILCI 181 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~-~wa-~~~g~~r~~~l~~~~d~v~~~ 181 (394)
...++.+.+++++||+|++.|+. +..++..+.++. .++|+ +|..... -|. ..++...-..+.+.+|.+++.
T Consensus 76 ~~~~l~~~l~~~~pDvV~~~g~~--~~~~~~~~aa~~----~~iPv-v~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~ 148 (363)
T cd03786 76 LLIGLEAVLLEEKPDLVLVLGDT--NETLAAALAAFK----LGIPV-AHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAP 148 (363)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCc--hHHHHHHHHHHH----cCCCE-EEEecccccCCCCCCchHHHHHHHHHhhhccCC
Confidence 56677888999999999998642 222222222121 17895 5643211 110 011111112357889999999
Q ss_pred CcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHH-HHhh
Q 016179 182 LPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQE-VARM 257 (394)
Q Consensus 182 ~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~e-i~~~ 257 (394)
++..++.+.+.|++ +.++|||+.|.+..... .......++++++++ .+.+++++|++..+ .++.
T Consensus 149 s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~-----------~~~~~~~~~~~~~~~-~~~vlv~~~r~~~~~~~k~ 216 (363)
T cd03786 149 TEEARRNLLQEGEPPERIFVVGNTMIDALLRLLE-----------LAKKELILELLGLLP-KKYILVTLHRVENVDDGEQ 216 (363)
T ss_pred CHHHHHHHHHcCCCcccEEEECchHHHHHHHHHH-----------hhccchhhhhcccCC-CCEEEEEeCCccccCChHH
Confidence 99999999888886 77899999887542110 011122345677754 56677777776643 2445
Q ss_pred HHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCC---CCEEEecCCCcchHHHHHHHcccceehhhHHHHHH
Q 016179 258 LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP---VPSILVPGGSSNLKYDAFSASRVALCTSGTVAVEL 334 (394)
Q Consensus 258 l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~---~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa 334 (394)
++.++++++.+.+. ++++++++++. .++.+++...+++ .+++++.....+++..+|++||++|+.||+++.|+
T Consensus 217 ~~~l~~al~~l~~~--~~~vi~~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sggi~~Ea 292 (363)
T cd03786 217 LEEILEALAELAEE--DVPVVFPNHPR--TRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSGGIQEEA 292 (363)
T ss_pred HHHHHHHHHHHHhc--CCEEEEECCCC--hHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCccHHhhh
Confidence 77888998888542 57777776543 2334444444332 35666532114689999999999999999887799
Q ss_pred HHcCCCEEEEEc
Q 016179 335 QLARLPCVVAYR 346 (394)
Q Consensus 335 ~a~G~P~Iv~y~ 346 (394)
+++|+|+|++..
T Consensus 293 ~~~g~PvI~~~~ 304 (363)
T cd03786 293 SFLGVPVLNLRD 304 (363)
T ss_pred hhcCCCEEeeCC
Confidence 999999998743
No 17
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.83 E-value=3.9e-18 Score=168.77 Aligned_cols=291 Identities=18% Similarity=0.079 Sum_probs=177.2
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhh--HhccCcccccc---CcceeccHHHhhhhHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMM--SEQGMKSLFPM---EDIAVMGIWELLPHIYKFRVRLK 106 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m--~~~g~~~~~~~---~~l~~~G~~~~l~~~~~~~~~~~ 106 (394)
|||++.+|....=..-+.++++|++...-+..++..| ++. -+...+. |.+ ..+.+.+ . .-.....+...+.
T Consensus 1 ~~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg-~h~~~~~~~~~~-~~i~~~~~~~~~~-~-~~~~~~~~~~~~~ 76 (365)
T TIGR00236 1 LKVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTA-QHREMLDQVLDL-FHLPPDYDLNIMS-P-GQTLGEITSNMLE 76 (365)
T ss_pred CeEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeC-CCHHHHHHHHHh-cCCCCCeeeecCC-C-CCCHHHHHHHHHH
Confidence 6899999998777778889999986421025555554 332 1111111 111 1122221 1 0111223445567
Q ss_pred HHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecC--ccccccCcchHHHH--HHHhhhheeecC
Q 016179 107 ETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAP--SFWAWKGGEARLKN--LAAFVDHILCIL 182 (394)
Q Consensus 107 ~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~--~~wa~~~g~~r~~~--l~~~~d~v~~~~ 182 (394)
++.+++++++||+|++.|. .+..+++.+.++. .++|+ +|.... +.+.+.+.....++ +.+.+|.+|+.+
T Consensus 77 ~l~~~l~~~~pDiv~~~gd--~~~~la~a~aa~~----~~ipv-~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s 149 (365)
T TIGR00236 77 GLEELLLEEKPDIVLVQGD--TTTTLAGALAAFY----LQIPV-GHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPT 149 (365)
T ss_pred HHHHHHHHcCCCEEEEeCC--chHHHHHHHHHHH----hCCCE-EEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCC
Confidence 7889999999999998863 2323322222221 17895 564211 11111100012222 367899999999
Q ss_pred cccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHH
Q 016179 183 PNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLP 259 (394)
Q Consensus 183 p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~ 259 (394)
+..++.+.+.|++ +.++|||+.|.+..... ...+.+.+++++. +.+++++ .|+|..+..+.++
T Consensus 150 ~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~-----------~~~~~~~~~~~~~--~~~~vl~-~~hr~~~~~k~~~ 215 (365)
T TIGR00236 150 EQAKDNLLRENVKADSIFVTGNTVIDALLTNVE-----------IAYSSPVLSEFGE--DKRYILL-TLHRRENVGEPLE 215 (365)
T ss_pred HHHHHHHHHcCCCcccEEEeCChHHHHHHHHHh-----------hccchhHHHhcCC--CCCEEEE-ecCchhhhhhHHH
Confidence 9999999888875 67899998776532110 0113455666663 3344544 5667644445578
Q ss_pred HHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCC
Q 016179 260 IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARL 339 (394)
Q Consensus 260 ~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~ 339 (394)
.+++++..+.++.|+++++++++++....+.+.+.. +...+++++......++..+|+.||++|+.||++++||+++|+
T Consensus 216 ~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg~~~~EA~a~g~ 294 (365)
T TIGR00236 216 NIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHL-GDSKRVHLIEPLEYLDFLNLAANSHLILTDSGGVQEEAPSLGK 294 (365)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHh-CCCCCEEEECCCChHHHHHHHHhCCEEEECChhHHHHHHHcCC
Confidence 899999998777788998888776544333232222 2223577664221357889999999999999999899999999
Q ss_pred CEEEEEcCC
Q 016179 340 PCVVAYRAH 348 (394)
Q Consensus 340 P~Iv~y~~~ 348 (394)
|+|.+++.+
T Consensus 295 PvI~~~~~~ 303 (365)
T TIGR00236 295 PVLVLRDTT 303 (365)
T ss_pred CEEECCCCC
Confidence 999876554
No 18
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.71 E-value=5.4e-16 Score=151.10 Aligned_cols=275 Identities=11% Similarity=0.046 Sum_probs=143.3
Q ss_pred eEEEEeCCch-HHHH-HHHHHHHHHhcCCCCeEEEEecCh--hhHhccCccccccCcceec---cHHHhhhhHH---HH-
Q 016179 33 RVFIVAGEVS-GDSI-GSRLMSAMKKLAPLPVSFSGVGGS--MMSEQGMKSLFPMEDIAVM---GIWELLPHIY---KF- 101 (394)
Q Consensus 33 kIlI~aG~~s-Gh~~-a~~l~~~L~~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~~~---G~~~~l~~~~---~~- 101 (394)
||+++++|+| ||+. +.+|+++|++ +++ +.+++.|.. -++..+++.......+.+. |.....+.+. .+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~e-v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~ 78 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYE-VSYIASGRSKNYISKYGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYSP 78 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCe-EEEEEcCCHHHhhhhhcCcceeccCCceEeecCCcCcHHHHHHhhcccc
Confidence 6899999999 9999 9999999998 665 777765432 1233344321111111111 2111222221 22
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeE-EEeecCccccc-cCcchHHHHHHHhhhhee
Q 016179 102 RVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAH-FHYVAPSFWAW-KGGEARLKNLAAFVDHIL 179 (394)
Q Consensus 102 ~~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~-~~yv~~~~wa~-~~g~~r~~~l~~~~d~v~ 179 (394)
.+.+.+..+++++++||+||+. + ++...++++. . ++|++ ++ +| |.. .++ ........++.++
T Consensus 79 ~~~~~~~~~~l~~~~pDlVi~d-~-~~~~~~aA~~--~------~iP~i~i~---~q-~~~~~~~--~~~~~~~~~~~~~ 142 (321)
T TIGR00661 79 KKAIRREINIIREYNPDLIISD-F-EYSTVVAAKL--L------KIPVICIS---NQ-NYTRYPL--KTDLIVYPTMAAL 142 (321)
T ss_pred HHHHHHHHHHHHhcCCCEEEEC-C-chHHHHHHHh--c------CCCEEEEe---cc-hhhcCCc--ccchhHHHHHHHH
Confidence 2456778899999999999975 4 2444444443 2 79965 33 33 211 122 1222232333333
Q ss_pred ecCcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHH
Q 016179 180 CILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLP 259 (394)
Q Consensus 180 ~~~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~ 259 (394)
..++...+.+-....+...+|+| +...... .+..+.+..+ + .+.+.+.|++.+||++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~-----------~~~~~~~~~~-~-~~~~~~~iLv~~g~~~~~------ 201 (321)
T TIGR00661 143 RIFNERCERFIVPDYPFPYTICP--KIIKNME-----------GPLIRYDVDD-V-DNYGEDYILVYIGFEYRY------ 201 (321)
T ss_pred HHhccccceEeeecCCCCCCCCc--cccccCC-----------Ccccchhhhc-c-ccCCCCcEEEECCcCCHH------
Confidence 33333332221001122335555 1110000 0111111111 1 133557788988998743
Q ss_pred HHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHH-HHHHcC
Q 016179 260 IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLAR 338 (394)
Q Consensus 260 ~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tl-Ea~a~G 338 (394)
.++++++.+ +++++++ +...... . .+..++.+.. +..+++.++|.+||++|+++|..|+ |++++|
T Consensus 202 ~l~~~l~~~----~~~~~i~--~~~~~~~---~----~~~~~v~~~~-~~~~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g 267 (321)
T TIGR00661 202 KILELLGKI----ANVKFVC--YSYEVAK---N----SYNENVEIRR-ITTDNFKELIKNAELVITHGGFSLISEALSLG 267 (321)
T ss_pred HHHHHHHhC----CCeEEEE--eCCCCCc---c----ccCCCEEEEE-CChHHHHHHHHhCCEEEECCChHHHHHHHHcC
Confidence 233444332 4444433 3221111 1 1123566553 3124899999999999999999888 999999
Q ss_pred CCEEEEEcCChHHH-HHHHhhcc
Q 016179 339 LPCVVAYRAHFLTE-WFIRYKAK 360 (394)
Q Consensus 339 ~P~Iv~y~~~~~~~-~~a~~~vk 360 (394)
+|+|++...+...+ ..|+.+.+
T Consensus 268 ~P~l~ip~~~~~eQ~~na~~l~~ 290 (321)
T TIGR00661 268 KPLIVIPDLGQFEQGNNAVKLED 290 (321)
T ss_pred CCEEEEcCCCcccHHHHHHHHHH
Confidence 99998743333233 33665554
No 19
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=4.3e-15 Score=141.93 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=144.7
Q ss_pred chHHHH-HHHHHHHHHhcCCCCeEEEEecCh-----hhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHHHHh
Q 016179 41 VSGDSI-GSRLMSAMKKLAPLPVSFSGVGGS-----MMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALL 114 (394)
Q Consensus 41 ~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~-----~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~i~~ 114 (394)
+.||++ ..+||++|++++.+ +.|+.-..+ .+++.|++.. .++-. .+ ...-..++.+++++
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~-v~f~~~~~~~~~~~~i~~~g~~v~----~~~~~--~~-------~~~d~~~~~~~l~~ 78 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAE-VAFACKPLPGDLIDLLLSAGFPVY----ELPDE--SS-------RYDDALELINLLEE 78 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCE-EEEEeCCCCHHHHHHHHHcCCeEE----EecCC--Cc-------hhhhHHHHHHHHHh
Confidence 679999 99999999877654 666654321 2344454421 11100 00 01223456788888
Q ss_pred cCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHH-HHHhc-
Q 016179 115 FRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEA-ICRLN- 192 (394)
Q Consensus 115 ~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~-~~~~~- 192 (394)
.+||++|+.+| .+....-..++.. +.++ +.......+.+ .||.++...+.... .|...
T Consensus 79 ~~~d~vV~D~y-~~~~~~~~~~k~~------~~~l-~~iDD~~~~~~------------~~D~vin~~~~~~~~~y~~~~ 138 (279)
T TIGR03590 79 EKFDILIVDHY-GLDADWEKLIKEF------GRKI-LVIDDLADRPH------------DCDLLLDQNLGADASDYQGLV 138 (279)
T ss_pred cCCCEEEEcCC-CCCHHHHHHHHHh------CCeE-EEEecCCCCCc------------CCCEEEeCCCCcCHhHhcccC
Confidence 89999997555 5666666666643 3342 32222221111 58988877665322 23321
Q ss_pred -CCCeEEEcC---CCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHh
Q 016179 193 -GLAATFVGH---PVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELL 268 (394)
Q Consensus 193 -g~~~~~vG~---Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l 268 (394)
.-...+.|. |+|++|.... +....++ +.+.+++.+|||.++.+ ...+++++..+
T Consensus 139 ~~~~~~l~G~~Y~~lr~eF~~~~---------------~~~~~~~----~~~~iLi~~GG~d~~~~---~~~~l~~l~~~ 196 (279)
T TIGR03590 139 PANCRLLLGPSYALLREEFYQLA---------------TANKRRK----PLRRVLVSFGGADPDNL---TLKLLSALAES 196 (279)
T ss_pred cCCCeEEecchHHhhhHHHHHhh---------------Hhhhccc----ccCeEEEEeCCcCCcCH---HHHHHHHHhcc
Confidence 113568999 9999986311 0111111 22346666777776542 22344555443
Q ss_pred hhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEEEc
Q 016179 269 KDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYR 346 (394)
Q Consensus 269 ~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~ 346 (394)
.+++++.+++|++....+.+++.....+ ++++..+ .++|.++|+.||++|+++|+++.|++++|+|+|++..
T Consensus 197 ---~~~~~i~vv~G~~~~~~~~l~~~~~~~~-~i~~~~~--~~~m~~lm~~aDl~Is~~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 197 ---QINISITLVTGSSNPNLDELKKFAKEYP-NIILFID--VENMAELMNEADLAIGAAGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred ---ccCceEEEEECCCCcCHHHHHHHHHhCC-CEEEEeC--HHHHHHHHHHCCEEEECCchHHHHHHHcCCCEEEEEe
Confidence 2467888888875333344555544433 6776643 5899999999999999989544599999999998743
No 20
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=3e-14 Score=137.97 Aligned_cols=284 Identities=15% Similarity=0.135 Sum_probs=184.9
Q ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeE-EEEecChhh---------HhccCccccccCcceec--c--HHHhh
Q 016179 30 GELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVS-FSGVGGSMM---------SEQGMKSLFPMEDIAVM--G--IWELL 95 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~-~~g~gg~~m---------~~~g~~~~~~~~~l~~~--G--~~~~l 95 (394)
+++||+++.|...-=+.-+.+++++.+.. + ++ ++.+.|+++ +.-++.. |-..+.++ | +.+.
T Consensus 2 ~~~Kv~~I~GTRPE~iKmapli~~~~~~~-~-~~~~vi~TGQH~d~em~~~~le~~~i~~--pdy~L~i~~~~~tl~~~- 76 (383)
T COG0381 2 KMLKVLTIFGTRPEAIKMAPLVKALEKDP-D-FELIVIHTGQHRDYEMLDQVLELFGIRK--PDYDLNIMKPGQTLGEI- 76 (383)
T ss_pred CceEEEEEEecCHHHHHHhHHHHHHHhCC-C-CceEEEEecccccHHHHHHHHHHhCCCC--CCcchhccccCCCHHHH-
Confidence 57899999998877777889999998753 2 33 445555654 2222321 22334444 2 2232
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecC----ccccccCcchHHHH-
Q 016179 96 PHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAP----SFWAWKGGEARLKN- 170 (394)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~----~~wa~~~g~~r~~~- 170 (394)
.-+.+..+.+++.+++||+|+..| +.+..+|..|.+.+. +||+ .|-... ..+ |+. =+||
T Consensus 77 -----t~~~i~~~~~vl~~~kPD~VlVhG--DT~t~lA~alaa~~~----~IpV-~HvEAGlRt~~~~-~PE---E~NR~ 140 (383)
T COG0381 77 -----TGNIIEGLSKVLEEEKPDLVLVHG--DTNTTLAGALAAFYL----KIPV-GHVEAGLRTGDLY-FPE---EINRR 140 (383)
T ss_pred -----HHHHHHHHHHHHHhhCCCEEEEeC--CcchHHHHHHHHHHh----CCce-EEEecccccCCCC-CcH---HHHHH
Confidence 334556677888899999988765 344444444433322 7895 674221 112 332 2333
Q ss_pred -HHHhhhheeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEE
Q 016179 171 -LAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 246 (394)
Q Consensus 171 -l~~~~d~v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Illl 246 (394)
....+|..|+..+..++.|.+.|++ +.+||||+.|.+..... ...+.......+-.+.++..|+++
T Consensus 141 l~~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~----------~~~~~~~~~~~~~~~~~~~~iLvT 210 (383)
T COG0381 141 LTSHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRD----------RVLEDSKILAKGLDDKDKKYILVT 210 (383)
T ss_pred HHHHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHh----------hhccchhhHHhhhccccCcEEEEE
Confidence 3778999999999999999888986 67899999998754210 001112222221122344566665
Q ss_pred CCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceeh
Q 016179 247 PGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCT 326 (394)
Q Consensus 247 gGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~ 326 (394)
+.|...+...+..+.+++.++.+++++++++.++.+++.+++.....+.. ..+++++++....++..+|..|-+++|-
T Consensus 211 -~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~-~~~v~li~pl~~~~f~~L~~~a~~iltD 288 (383)
T COG0381 211 -AHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKN-VERVKLIDPLGYLDFHNLMKNAFLILTD 288 (383)
T ss_pred -cchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCC-CCcEEEeCCcchHHHHHHHHhceEEEec
Confidence 57775443457788889999988888999999999875554433222222 2257777654356889999999999999
Q ss_pred hhHHHHHHHHcCCCEEEEEc
Q 016179 327 SGTVAVELQLARLPCVVAYR 346 (394)
Q Consensus 327 SGt~tlEa~a~G~P~Iv~y~ 346 (394)
||+..-||..+|+|++++..
T Consensus 289 SGgiqEEAp~lg~Pvl~lR~ 308 (383)
T COG0381 289 SGGIQEEAPSLGKPVLVLRD 308 (383)
T ss_pred CCchhhhHHhcCCcEEeecc
Confidence 99999999999999998743
No 21
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.64 E-value=2.8e-13 Score=134.34 Aligned_cols=283 Identities=13% Similarity=0.088 Sum_probs=166.3
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCC-CeEEEEecChhhH-----------hccCccccccCcceeccHHHhhhhHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPL-PVSFSGVGGSMMS-----------EQGMKSLFPMEDIAVMGIWELLPHIY 99 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~-~~~~~g~gg~~m~-----------~~g~~~~~~~~~l~~~G~~~~l~~~~ 99 (394)
|||++++|....=+.-+.++++|++. ++ ++.++..| +++. +.|+... +-..+.+++-. .-....
T Consensus 1 ~ki~~v~GtRpe~iklapv~~~l~~~-~~~~~~lv~tG-qH~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 76 (365)
T TIGR03568 1 KKICVVTGTRADYGLLRPLLKALQDD-PDLELQLIVTG-MHLSPEYGNTVNEIEKDGFDID-EKIEILLDSDS-NAGMAK 76 (365)
T ss_pred CeEEEEEecChhHHHHHHHHHHHhcC-CCCcEEEEEeC-CCCChhhccHHHHHHHcCCCCC-CccccccCCCC-CCCHHH
Confidence 68999999998888888999999863 22 24455544 4432 2223211 11112222100 001112
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccc-cCcchHHHH-HHHhhhh
Q 016179 100 KFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAW-KGGEARLKN-LAAFVDH 177 (394)
Q Consensus 100 ~~~~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~-~~g~~r~~~-l~~~~d~ 177 (394)
.+.+.+.++.+++++++||+|++.|. .+..++..+...+ .+||+ .|... ..+.+ .+. ...++ +.+.+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~Pd~vlv~GD--~~~~la~alaA~~----~~IPv-~Hvea-G~rs~~~~e-E~~r~~i~~la~l 147 (365)
T TIGR03568 77 SMGLTIIGFSDAFERLKPDLVVVLGD--RFEMLAAAIAAAL----LNIPI-AHIHG-GEVTEGAID-ESIRHAITKLSHL 147 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCC--chHHHHHHHHHHH----hCCcE-EEEEC-CccCCCCch-HHHHHHHHHHHhh
Confidence 24455677888999999999998873 2222222222221 17995 67532 22211 111 12333 4888999
Q ss_pred eeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHH-H
Q 016179 178 ILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQ-E 253 (394)
Q Consensus 178 v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~-e 253 (394)
.|+..+..++.+.+.|++ +.+||+|+.|.+.... ..+++++.+++|++++++.++++. .++. +
T Consensus 148 ~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~------------~~~~~~~~~~lgl~~~~~~vlvt~-Hp~~~~ 214 (365)
T TIGR03568 148 HFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLD------------LLSKEELEEKLGIDLDKPYALVTF-HPVTLE 214 (365)
T ss_pred ccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhh------------ccCHHHHHHHhCCCCCCCEEEEEe-CCCccc
Confidence 999999989988888873 7789999999875421 124567788899976556644432 2221 1
Q ss_pred -H--HhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc--ChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhh
Q 016179 254 -V--ARMLPIFAKTVELLKDSFPELITVIHVAPNR--HVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSG 328 (394)
Q Consensus 254 -i--~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~--~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SG 328 (394)
. ...+..+++++..+. .++.++++.+... ...+.+++...+ ..++.++......++..+|+.||++|+-|+
T Consensus 215 ~~~~~~~l~~li~~L~~~~---~~~~vi~P~~~p~~~~i~~~i~~~~~~-~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS 290 (365)
T TIGR03568 215 KESAEEQIKELLKALDELN---KNYIFTYPNADAGSRIINEAIEEYVNE-HPNFRLFKSLGQERYLSLLKNADAVIGNSS 290 (365)
T ss_pred ccCchHHHHHHHHHHHHhc---cCCEEEEeCCCCCchHHHHHHHHHhcC-CCCEEEECCCChHHHHHHHHhCCEEEEcCh
Confidence 1 122444555554432 2455565544211 122334433221 235777753225789999999999999995
Q ss_pred HHHHHHHHcCCCEEEE
Q 016179 329 TVAVELQLARLPCVVA 344 (394)
Q Consensus 329 t~tlEa~a~G~P~Iv~ 344 (394)
+...||+++|+|+|.+
T Consensus 291 ggi~EA~~lg~Pvv~l 306 (365)
T TIGR03568 291 SGIIEAPSFGVPTINI 306 (365)
T ss_pred hHHHhhhhcCCCEEee
Confidence 5559999999999975
No 22
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.62 E-value=1.5e-13 Score=133.91 Aligned_cols=284 Identities=14% Similarity=0.113 Sum_probs=163.9
Q ss_pred EEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChh---hHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHH
Q 016179 34 VFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSM---MSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIE 110 (394)
Q Consensus 34 IlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~---m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~ 110 (394)
|+-+.+.+|...+...++++|.+.+.+ +.++..+++. .+..|++.. .+...+. ........+..+.+
T Consensus 3 ~~~~~~~gG~e~~~~~l~~~L~~~g~~-v~v~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~l~~ 72 (355)
T cd03819 3 VLPALESGGVERGTLELARALVERGHR-SLVASAGGRLVAELEAEGSRHI----KLPFISK-----NPLRILLNVARLRR 72 (355)
T ss_pred cchhhccCcHHHHHHHHHHHHHHcCCE-EEEEcCCCchHHHHHhcCCeEE----Ecccccc-----chhhhHHHHHHHHH
Confidence 333333344567788999999987664 6666544432 233344321 1111110 11112233455677
Q ss_pred HHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHH
Q 016179 111 AALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICR 190 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~ 190 (394)
.+++.+||+|++.+. ++...+..+.+.. ++|++.+ .+..|.... ..+.+.+.+|.+++.++...+.+.
T Consensus 73 ~~~~~~~dii~~~~~--~~~~~~~~~~~~~-----~~~~i~~--~h~~~~~~~---~~~~~~~~~~~vi~~s~~~~~~~~ 140 (355)
T cd03819 73 LIREEKVDIVHARSR--APAWSAYLAARRT-----RPPFVTT--VHGFYSVNF---RYNAIMARGDRVIAVSNFIADHIR 140 (355)
T ss_pred HHHHcCCCEEEECCC--chhHHHHHHHHhc-----CCCEEEE--eCCchhhHH---HHHHHHHhcCEEEEeCHHHHHHHH
Confidence 888999999997642 2222222222121 6786433 233332210 234456679999999998888876
Q ss_pred -hcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHH
Q 016179 191 -LNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVE 266 (394)
Q Consensus 191 -~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~ 266 (394)
.++++ +.+++|++.......... ........+++++.+++.++++.. |.-. .. +....+++++.
T Consensus 141 ~~~~~~~~k~~~i~ngi~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~-Gr~~-~~-Kg~~~li~~~~ 208 (355)
T cd03819 141 ENYGVDPDRIRVIPRGVDLDRFDPGAV---------PPERILALAREWPLPKGKPVILLP-GRLT-RW-KGQEVFIEALA 208 (355)
T ss_pred HhcCCChhhEEEecCCccccccCcccc---------chHHHHHHHHHcCCCCCceEEEEe-eccc-cc-cCHHHHHHHHH
Confidence 45553 677888764432210000 000112256777877776655554 4332 12 23567888999
Q ss_pred HhhhhCCCeEEEEEeCCCcC--hHHHHHHHhhcCC--CCEEEecCCCcchHHHHHHHcccceehh------hHHHHHHHH
Q 016179 267 LLKDSFPELITVIHVAPNRH--VENYITGLIQKWP--VPSILVPGGSSNLKYDAFSASRVALCTS------GTVAVELQL 336 (394)
Q Consensus 267 ~l~~~~~~~~~vi~~g~~~~--~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~ADl~I~~S------Gt~tlEa~a 336 (394)
.+.++.+++++++++.+... +.+.+.+.+.+.+ .++.++ |+ .+++.++|+.||++|..| |.+.+||++
T Consensus 209 ~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a 286 (355)
T cd03819 209 RLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFV-GH-CSDMPAAYALADIVVSASTEPEAFGRTAVEAQA 286 (355)
T ss_pred HHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEc-CC-cccHHHHHHhCCEEEecCCCCCCCchHHHHHHh
Confidence 88776678998888875432 2222233333333 246666 44 579999999999999988 555569999
Q ss_pred cCCCEEEEEcCChHHHHH
Q 016179 337 ARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 337 ~G~P~Iv~y~~~~~~~~~ 354 (394)
+|+|+|+ +..++....+
T Consensus 287 ~G~PvI~-~~~~~~~e~i 303 (355)
T cd03819 287 MGRPVIA-SDHGGARETV 303 (355)
T ss_pred cCCCEEE-cCCCCcHHHH
Confidence 9999886 5556655555
No 23
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.62 E-value=1.8e-14 Score=133.65 Aligned_cols=299 Identities=18% Similarity=0.171 Sum_probs=173.8
Q ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhcC-CCCeE----EEEecChhhHhccCccccccCcceeccHHH-hhhhHHHHHH
Q 016179 30 GELRVFIVAGEVSGDSIGSRLMSAMKKLA-PLPVS----FSGVGGSMMSEQGMKSLFPMEDIAVMGIWE-LLPHIYKFRV 103 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l~~~L~~~~-~~~~~----~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~-~l~~~~~~~~ 103 (394)
..+||++++.|+|.|+.|.+|+++|+++. |+++- ++|.|+ .++..+++...+...++..||.. -++.+.+-.+
T Consensus 5 ~~~kiLllSNGHgEDlia~~i~qal~rra~p~eila~LPLVGeG~-aYq~l~i~ligpv~~mPSGGf~y~~~~~l~rDvr 83 (412)
T COG4370 5 VAPKILLLSNGHGEDLIAVAIAQALRRRAPPDEILAALPLVGEGG-AYQNLNIELIGPVLTMPSGGFIYMDLRNLWRDVR 83 (412)
T ss_pred cccceEEeecCchHHHHHHHHHHHHHhhCCCcceeeccccccCch-hhcccCcceecccccCCCCCcccccHHHHHHHHh
Confidence 57899999999999999999999999876 33222 356664 56666777666777777777641 1122221111
Q ss_pred -H-----HHHHHHHHHhcCCC--------EEEEeCCCCchHHHHHHHHHhccccCCCCCe--EEEeecCccccccC--cc
Q 016179 104 -R-----LKETIEAALLFRPH--------AVVTVDSKGFSFRLLKQLRARYSHERLNGPA--HFHYVAPSFWAWKG--GE 165 (394)
Q Consensus 104 -~-----~~~~~~~i~~~~PD--------~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~--~~~yv~~~~wa~~~--g~ 165 (394)
. +.|+ ..++++.|. .++.+|- ..++.++ .+..... +.+++ .-||+....-.|.+ +-
T Consensus 84 gGLvqlT~~Qi-~alrkq~~q~~~~g~~~~ilAvGd-ivpla~a-~lg~~~y---~~v~~a~seyyvr~~~g~~l~~t~a 157 (412)
T COG4370 84 GGLVQLTLGQI-LALRKQGPQLERVGVVGDILAVGD-IVPLAFA-ILGGLAY---AFVGTAKSEYYVRVEYGLGLPLTGA 157 (412)
T ss_pred ccHHHhhHHHH-HHHHHhhhhhhhcccccceEEecc-hhHHHHH-hhcCCcc---cceeecccceeeeeccccCCccchh
Confidence 1 1121 122333332 3455542 2344333 2221100 11121 12343211111111 00
Q ss_pred hHH-H---------H--HHHhhhheeecCcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhh
Q 016179 166 ARL-K---------N--LAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNK 233 (394)
Q Consensus 166 ~r~-~---------~--l~~~~d~v~~~~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 233 (394)
-|- | + ..|.|-.+|.-..++.+.+.+.|+++.++|||++|.+... +.....
T Consensus 158 ~rwen~lg~~y~pwwlm~~rrc~~vf~rD~~Taq~L~~rgvna~~vGnpmmD~L~p~--------------~~~~q~--- 220 (412)
T COG4370 158 LRWENALGAVYMPWWLMLRRRCWAVFPRDALTAQHLANRGVNAAYVGNPMMDGLPPP--------------ERDPQL--- 220 (412)
T ss_pred hhhhhhcccchhhHHHHhcccceeeeccccccHHHHHhcCCchhhccChhhccCCCc--------------cCCchh---
Confidence 000 0 1 2667888888778888899999999999999999986420 111111
Q ss_pred cCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHh--hcCCC--------CEE
Q 016179 234 YSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLI--QKWPV--------PSI 303 (394)
Q Consensus 234 lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~--~~~~~--------~v~ 303 (394)
+-...++|.++||||..|...+++.++.++-.+...+..+.|+-...+...+. .+.... .+|.. +..
T Consensus 221 --l~~g~~viaLLPGsR~pea~~nl~~il~slcal~~~~a~vvfw~ai~~~lpl~-~l~~l~e~~gWq~~ad~~~kdnc~ 297 (412)
T COG4370 221 --LLTGVPVIALLPGSRVPEAQTNLAVILGSLCALPAMFALVVFWAAIAPELPLL-LLWTLEERQGWQPLADRFGKDNCS 297 (412)
T ss_pred --hccCCceEEecCCCCChHHHhhHHHHHHHHhhhHHHHHHHHHHhccCcCCCHH-HHHHHHHhcCcchhhhhhccCceE
Confidence 12456799999999988877778888876655544333322322222222211 111111 12221 233
Q ss_pred EecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEE-EcCChHHHHHHHh
Q 016179 304 LVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVA-YRAHFLTEWFIRY 357 (394)
Q Consensus 304 ~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~-y~~~~~~~~~a~~ 357 (394)
++.- .....+++.+||+++.++||+|.++..+|+|+|-+ -..+..++.||.+
T Consensus 298 l~ls--qqsfadiLH~adaalgmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~r 350 (412)
T COG4370 298 LWLS--QQSFADILHAADAALGMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAER 350 (412)
T ss_pred EEEe--HHHHHHHHHHHHHHHHhccchHHHhhccCCceeecCCCCCCcChHHHHH
Confidence 3322 45789999999999999999999999999999865 3677889889754
No 24
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.60 E-value=3.1e-13 Score=131.77 Aligned_cols=283 Identities=14% Similarity=0.052 Sum_probs=159.4
Q ss_pred EEEEeC--CchHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHH
Q 016179 34 VFIVAG--EVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIE 110 (394)
Q Consensus 34 IlI~aG--~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~ 110 (394)
|+++.. +.||+.. +.+++++|++++.+ ++++...+....+. .........+. + .+....++..+.++.+
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~-v~v~~~~~~~~~~~-~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~ 73 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQ-VAIISLTGESEVKP-PIDATIILNLN---M---SKNPLSFLLALWKLRK 73 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCce-EEEEEEeCCCCccc-hhhccceEEec---c---cccchhhHHHHHHHHH
Confidence 554433 3577666 88899999887765 87776544321111 00000000010 1 1112223344556778
Q ss_pred HHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHH-HHHhhhheeecCcccHHHH
Q 016179 111 AALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKN-LAAFVDHILCILPNEEAIC 189 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~-l~~~~d~v~~~~p~~~~~~ 189 (394)
++++++||+|++.... +..++..++... .+.|+++. .+..+.+........+ ..++++.+.+.++...+.+
T Consensus 74 ~~~~~~pdiv~~~~~~--~~~~~~l~~~~~----~~~~~v~~--~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 145 (360)
T cd04951 74 ILRQFKPDVVHAHMFH--ANIFARLLRLFL----PSPPLICT--AHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYF 145 (360)
T ss_pred HHHhcCCCEEEEcccc--hHHHHHHHHhhC----CCCcEEEE--eeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHH
Confidence 8899999999875421 222222222221 14564332 2222111000001111 2445677777778777777
Q ss_pred HhcC-C---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHH
Q 016179 190 RLNG-L---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTV 265 (394)
Q Consensus 190 ~~~g-~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~ 265 (394)
.+.+ + ++.++.|++..... .+ ....+...+++++++++.++++.+|+... . +....+++++
T Consensus 146 ~~~~~~~~~~~~~i~ng~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--~-kg~~~li~a~ 210 (360)
T cd04951 146 IASKAFNANKSFVVYNGIDTDRF--RK----------DPARRLKIRNALGVKNDTFVILAVGRLVE--A-KDYPNLLKAF 210 (360)
T ss_pred HhccCCCcccEEEEccccchhhc--Cc----------chHHHHHHHHHcCcCCCCEEEEEEeeCch--h-cCcHHHHHHH
Confidence 6554 3 35566665532211 10 01223456778888888777777654332 2 3356788899
Q ss_pred HHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEEEecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcC
Q 016179 266 ELLKDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLAR 338 (394)
Q Consensus 266 ~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G 338 (394)
..+.++.|++++++++.+. . .+.+++...+.+ .++.++ |+ .+++.++|+.||++|..| |.+.+||+++|
T Consensus 211 ~~l~~~~~~~~l~i~G~g~-~-~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G 286 (360)
T cd04951 211 AKLLSDYLDIKLLIAGDGP-L-RATLERLIKALGLSNRVKLL-GL-RDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACE 286 (360)
T ss_pred HHHHhhCCCeEEEEEcCCC-c-HHHHHHHHHhcCCCCcEEEe-cc-cccHHHHHHhhceEEecccccCCChHHHHHHHcC
Confidence 8888777889999887653 2 234455444433 246666 44 578999999999999998 45556999999
Q ss_pred CCEEEEEcCChHHH
Q 016179 339 LPCVVAYRAHFLTE 352 (394)
Q Consensus 339 ~P~Iv~y~~~~~~~ 352 (394)
+|+|+ .+.+....
T Consensus 287 ~PvI~-~~~~~~~e 299 (360)
T cd04951 287 LPVVA-TDAGGVRE 299 (360)
T ss_pred CCEEE-ecCCChhh
Confidence 99886 55554443
No 25
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.59 E-value=7.2e-13 Score=130.26 Aligned_cols=289 Identities=12% Similarity=0.057 Sum_probs=164.7
Q ss_pred ceEEEEeC-CchH-HHHHHHHHHHHHhcCCCCeEEEEecChh-h--HhccCccccccCcceeccHHHhhhhHHHHHHHHH
Q 016179 32 LRVFIVAG-EVSG-DSIGSRLMSAMKKLAPLPVSFSGVGGSM-M--SEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLK 106 (394)
Q Consensus 32 ~kIlI~aG-~~sG-h~~a~~l~~~L~~~~~~~~~~~g~gg~~-m--~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~ 106 (394)
|||++++- ..|| ..++..+++.|.+.+.+ +.++...++. . ...++.. . .+.+..+ ..............
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~-v~v~~~~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~~~~~~~ 74 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHE-VHFITSSRPFRLDEYSPNIFF--H--EVEVPQY-PLFQYPPYDLALAS 74 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCc-eEEEecCCCcchhhhccCeEE--E--Eeccccc-chhhcchhHHHHHH
Confidence 57766554 3455 34478999999998775 8777654331 1 1111111 0 0111111 01111111223345
Q ss_pred HHHHHHHhcCCCEEEEeCC-CC-chHHHHHHHHHhccccCCCCCeEEEeecCcccc--ccCcchH-HHHHHHhhhheeec
Q 016179 107 ETIEAALLFRPHAVVTVDS-KG-FSFRLLKQLRARYSHERLNGPAHFHYVAPSFWA--WKGGEAR-LKNLAAFVDHILCI 181 (394)
Q Consensus 107 ~~~~~i~~~~PD~Vi~~~~-~~-f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa--~~~g~~r-~~~l~~~~d~v~~~ 181 (394)
.+.+.+++.+||+|++.+. +. +...++.++.++ .++|+++++.....+. +...... .+...+.+|.+++.
T Consensus 75 ~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 149 (371)
T cd04962 75 KIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGK-----KDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAV 149 (371)
T ss_pred HHHHHHhcCCccEEeecccCCccHHHHHHHHhcCc-----CCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEc
Confidence 6778888999999987542 11 122222222211 1578654432211110 1111011 23346789999999
Q ss_pred CcccHHHHHhcC---CCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhH
Q 016179 182 LPNEEAICRLNG---LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARML 258 (394)
Q Consensus 182 ~p~~~~~~~~~g---~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l 258 (394)
++..++.+.+.. -++.++.|++..... . +..+...+++++++++.++++.+|+-. +.+ .+
T Consensus 150 s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~il~~g~l~--~~K-~~ 212 (371)
T cd04962 150 SESLRQETYELFDITKEIEVIPNFVDEDRF--R------------PKPDEALKRRLGAPEGEKVLIHISNFR--PVK-RI 212 (371)
T ss_pred CHHHHHHHHHhcCCcCCEEEecCCcCHhhc--C------------CCchHHHHHhcCCCCCCeEEEEecccc--ccc-CH
Confidence 999888776542 246788887644321 1 122344567788888887777664322 223 35
Q ss_pred HHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCCcchHHHHHHHcccceehh-----hHHH
Q 016179 259 PIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVALCTS-----GTVA 331 (394)
Q Consensus 259 ~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~t 331 (394)
..+++++..+.++ ++.++++++.+. +. +.+++...+.+. ++.+.. + .+++.++|+.||++|..| |.+.
T Consensus 213 ~~li~a~~~l~~~-~~~~l~i~G~g~-~~-~~~~~~~~~~~~~~~v~~~g-~-~~~~~~~~~~~d~~v~ps~~E~~~~~~ 287 (371)
T cd04962 213 DDVIRIFAKVRKE-VPARLLLVGDGP-ER-SPAERLARELGLQDDVLFLG-K-QDHVEELLSIADLFLLPSEKESFGLAA 287 (371)
T ss_pred HHHHHHHHHHHhc-CCceEEEEcCCc-CH-HHHHHHHHHcCCCceEEEec-C-cccHHHHHHhcCEEEeCCCcCCCccHH
Confidence 6788888888654 468888777653 32 345555544433 466664 4 578999999999999998 6666
Q ss_pred HHHHHcCCCEEEEEcCChHHHHH
Q 016179 332 VELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 332 lEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
+||+++|+|+|. .+.+.....+
T Consensus 288 ~EAma~g~PvI~-s~~~~~~e~i 309 (371)
T cd04962 288 LEAMACGVPVVA-SNAGGIPEVV 309 (371)
T ss_pred HHHHHcCCCEEE-eCCCCchhhh
Confidence 799999999886 4555444444
No 26
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.57 E-value=5.4e-13 Score=129.30 Aligned_cols=263 Identities=16% Similarity=0.234 Sum_probs=134.5
Q ss_pred ceEEE-EeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecCh-h-hHhccCccccccCcceec---cHH---Hhhh----h
Q 016179 32 LRVFI-VAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGS-M-MSEQGMKSLFPMEDIAVM---GIW---ELLP----H 97 (394)
Q Consensus 32 ~kIlI-~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~-~-m~~~g~~~~~~~~~l~~~---G~~---~~l~----~ 97 (394)
|||++ +.|.+.||+. +.+|+++|+ +++ +.++..|.. . ++.. +.. .....+... +-. ..+. .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~Lr--g~~-v~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARALR--GHE-VTFITSGPAPEFLKPR-FPV-REIPGLGPIQENGRLDRWKTVRNNIRW 75 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHc--cCc-eEEEEcCCcHHHhccc-cCE-EEccCceEeccCCccchHHHHHHHHHh
Confidence 78876 4555889999 999999993 464 877766532 2 2222 221 111122111 111 1111 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccC-----cchHH-HHH
Q 016179 98 IYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKG-----GEARL-KNL 171 (394)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~-----g~~r~-~~l 171 (394)
...+.+.+.+..+.+++++||+||+ |+..+.. .++ +.. ++|++ . +.++.|...+ ..... ..+
T Consensus 76 ~~~~~~~~~~~~~~l~~~~pDlVIs-D~~~~~~-~aa--~~~------giP~i-~-i~~~~~~~~~~~~~~~~~~~~~~~ 143 (318)
T PF13528_consen 76 LARLARRIRREIRWLREFRPDLVIS-DFYPLAA-LAA--RRA------GIPVI-V-ISNQYWFLHPNFWLPWDQDFGRLI 143 (318)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEE-cChHHHH-HHH--Hhc------CCCEE-E-EEehHHcccccCCcchhhhHHHHH
Confidence 2234556677888999999999985 7432322 222 222 78963 2 3444444211 00011 112
Q ss_pred HHhhhheeecCcccHHHHH-------hcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEE
Q 016179 172 AAFVDHILCILPNEEAICR-------LNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVIS 244 (394)
Q Consensus 172 ~~~~d~v~~~~p~~~~~~~-------~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Il 244 (394)
.++.+.+. ++.....+. ....+..++|-.+++... +.. +.+.+.|+
T Consensus 144 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~-----------------------~~~--~~~~~~iL 196 (318)
T PF13528_consen 144 ERYIDRYH--FPPADRRLALSFYPPLPPFFRVPFVGPIIRPEIR-----------------------ELP--PEDEPKIL 196 (318)
T ss_pred HHhhhhcc--CCcccceecCCccccccccccccccCchhccccc-----------------------ccC--CCCCCEEE
Confidence 33333320 111111110 000112233322222111 110 12344555
Q ss_pred EECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccce
Q 016179 245 LLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVAL 324 (394)
Q Consensus 245 llgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I 324 (394)
+.-|+-+.. .++++++. .++.++++. |.+. .+. . ..++++... ..+++.++|++||++|
T Consensus 197 v~~gg~~~~------~~~~~l~~----~~~~~~~v~-g~~~-~~~------~--~~ni~~~~~-~~~~~~~~m~~ad~vI 255 (318)
T PF13528_consen 197 VYFGGGGPG------DLIEALKA----LPDYQFIVF-GPNA-ADP------R--PGNIHVRPF-STPDFAELMAAADLVI 255 (318)
T ss_pred EEeCCCcHH------HHHHHHHh----CCCCeEEEE-cCCc-ccc------c--CCCEEEeec-ChHHHHHHHHhCCEEE
Confidence 544444422 23444444 356777777 5432 111 0 225766642 1268999999999999
Q ss_pred ehhhHHHH-HHHHcCCCEEEEEcCChHHHHH-HHhhc
Q 016179 325 CTSGTVAV-ELQLARLPCVVAYRAHFLTEWF-IRYKA 359 (394)
Q Consensus 325 ~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~-a~~~v 359 (394)
+++|..|+ |++++|+|++++...+..++.. |+++-
T Consensus 256 s~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~ 292 (318)
T PF13528_consen 256 SKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLE 292 (318)
T ss_pred ECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHH
Confidence 99999987 9999999999876655455444 56554
No 27
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.56 E-value=1e-12 Score=134.46 Aligned_cols=287 Identities=13% Similarity=0.111 Sum_probs=157.7
Q ss_pred CCceEEEEeCC------chHHHHHHHHHHHHHhcCCCCeEEEEecChhh-HhccCccccccCcceeccHHHhhhhHHHHH
Q 016179 30 GELRVFIVAGE------VSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMM-SEQGMKSLFPMEDIAVMGIWELLPHIYKFR 102 (394)
Q Consensus 30 ~~~kIlI~aG~------~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m-~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~ 102 (394)
.+|||++.+.. +|.+.+...++++|++++.+ +.++....... +..++... ........ +...+ ...+
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~e-V~vlt~~~~~~~~~~g~~v~-~~~~~~~~-~~~~~---~~~~ 130 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDE-VLVVTTDEGVPQEFHGAKVI-GSWSFPCP-FYQKV---PLSL 130 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCe-EEEEecCCCCCccccCceee-ccCCcCCc-cCCCc---eeec
Confidence 56899877542 23366677899999988764 77665432111 11122210 00000000 00000 0000
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCc-c----ccccCcc---hH-HHHHHH
Q 016179 103 VRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPS-F----WAWKGGE---AR-LKNLAA 173 (394)
Q Consensus 103 ~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~-~----wa~~~g~---~r-~~~l~~ 173 (394)
....++.+++++.+||+|++.+ +++....+..+.++. ++|+++.+..+. . +.+.... +. .+.+.+
T Consensus 131 ~~~~~l~~~i~~~kpDiIh~~~-~~~~~~~~~~~ak~~-----~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 204 (465)
T PLN02871 131 ALSPRIISEVARFKPDLIHASS-PGIMVFGALFYAKLL-----CVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHR 204 (465)
T ss_pred cCCHHHHHHHHhCCCCEEEECC-CchhHHHHHHHHHHh-----CCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHh
Confidence 1112566788889999998764 333322222222221 689765443221 0 0010000 01 123567
Q ss_pred hhhheeecCcccHHHHHhcCC----CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcC-CCCCCcEEEEECC
Q 016179 174 FVDHILCILPNEEAICRLNGL----AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYS-VPSGATVISLLPG 248 (394)
Q Consensus 174 ~~d~v~~~~p~~~~~~~~~g~----~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg-l~~~~~~IlllgG 248 (394)
.+|.+++.++...+.+.+.+. ++.++.|.+..+. +.+ ..+..+.+.++. .+++.++|+.+ |
T Consensus 205 ~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~--f~p-----------~~~~~~~~~~~~~~~~~~~~i~~v-G 270 (465)
T PLN02871 205 AADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSES--FHP-----------RFRSEEMRARLSGGEPEKPLIVYV-G 270 (465)
T ss_pred hCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccc--cCC-----------ccccHHHHHHhcCCCCCCeEEEEe-C
Confidence 899999999999988877652 3566666654332 111 112334555553 23456666554 6
Q ss_pred CcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCC-cchHHHHHHHcccceehh
Q 016179 249 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS-SNLKYDAFSASRVALCTS 327 (394)
Q Consensus 249 Srg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~-~~~~~~~~~~ADl~I~~S 327 (394)
+.+.+ +.+..++++++.+ +++++++++++. .++.++++..+ .++.+. |+. .+++.++|+.||++|..|
T Consensus 271 rl~~~--K~~~~li~a~~~~----~~~~l~ivG~G~--~~~~l~~~~~~--~~V~f~-G~v~~~ev~~~~~~aDv~V~pS 339 (465)
T PLN02871 271 RLGAE--KNLDFLKRVMERL----PGARLAFVGDGP--YREELEKMFAG--TPTVFT-GMLQGDELSQAYASGDVFVMPS 339 (465)
T ss_pred CCchh--hhHHHHHHHHHhC----CCcEEEEEeCCh--HHHHHHHHhcc--CCeEEe-ccCCHHHHHHHHHHCCEEEECC
Confidence 66632 3456666666543 689988888653 23445555443 256665 442 368999999999999988
Q ss_pred -----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 328 -----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 328 -----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|.+.+|+|++|+|+|. .+.+.....+
T Consensus 340 ~~E~~g~~vlEAmA~G~PVI~-s~~gg~~eiv 370 (465)
T PLN02871 340 ESETLGFVVLEAMASGVPVVA-ARAGGIPDII 370 (465)
T ss_pred cccccCcHHHHHHHcCCCEEE-cCCCCcHhhh
Confidence 4455699999999886 4445554444
No 28
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.56 E-value=1.8e-12 Score=125.10 Aligned_cols=278 Identities=15% Similarity=0.084 Sum_probs=159.3
Q ss_pred eCCchHHHH-HHHHHHHHHhcCCCCeEEEEecCh-h----hHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHH
Q 016179 38 AGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGS-M----MSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEA 111 (394)
Q Consensus 38 aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~-~----m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~ 111 (394)
+.+.||.-. ...++++|.+.+.+ +.++..... . +...+++.. .+. ..... .....+.++.++
T Consensus 8 ~~~~gG~~~~~~~l~~~l~~~~~~-v~~~~~~~~~~~~~~~~~~~i~v~----~~~---~~~~~----~~~~~~~~~~~~ 75 (365)
T cd03807 8 GLDVGGAERMLVRLLKGLDRDRFE-HVVISLTDRGELGEELEEAGVPVY----CLG---KRPGR----PDPGALLRLYKL 75 (365)
T ss_pred eccCccHHHHHHHHHHHhhhccce-EEEEecCcchhhhHHHHhcCCeEE----EEe---ccccc----ccHHHHHHHHHH
Confidence 334566555 78899999776554 666655432 1 222233321 111 10111 122334456778
Q ss_pred HHhcCCCEEEEeCCC-CchHHHHHHHHHhccccCCCCCeEEEeecCcccc---ccCc-chHH-HHHHHhhhheeecCccc
Q 016179 112 ALLFRPHAVVTVDSK-GFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWA---WKGG-EARL-KNLAAFVDHILCILPNE 185 (394)
Q Consensus 112 i~~~~PD~Vi~~~~~-~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa---~~~g-~~r~-~~l~~~~d~v~~~~p~~ 185 (394)
+++.+||+|++..+. .+...++.... . +.|+ ++......+. |... ..+. ..+.+.+|.+++.++..
T Consensus 76 ~~~~~~div~~~~~~~~~~~~~~~~~~-~------~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~ 147 (365)
T cd03807 76 IRRLRPDVVHTWMYHADLYGGLAARLA-G------VPPV-IWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAA 147 (365)
T ss_pred HHhhCCCEEEeccccccHHHHHHHHhc-C------CCcE-EEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHH
Confidence 889999999986532 22222222221 1 4564 3332222111 1110 0011 12466788888999988
Q ss_pred HHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHH
Q 016179 186 EAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFA 262 (394)
Q Consensus 186 ~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll 262 (394)
.+.+.+.+.+ +.++.|++..... .+ ....+...+++++++++.++++.+| +... .+.+..++
T Consensus 148 ~~~~~~~~~~~~~~~vi~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~i~~~G-~~~~--~K~~~~li 212 (365)
T cd03807 148 AEYHQAIGYPPKKIVVIPNGVDTERF--SP----------DLDARARLREELGLPEDTFLIGIVA-RLHP--QKDHATLL 212 (365)
T ss_pred HHHHHHcCCChhheeEeCCCcCHHhc--CC----------cccchHHHHHhcCCCCCCeEEEEec-ccch--hcCHHHHH
Confidence 8888776653 5567776543221 11 1123445667889988777666654 3332 23467788
Q ss_pred HHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhh-cCCC--CEEEecCCCcchHHHHHHHcccceehhh-----HHHHHH
Q 016179 263 KTVELLKDSFPELITVIHVAPNRHVENYITGLIQ-KWPV--PSILVPGGSSNLKYDAFSASRVALCTSG-----TVAVEL 334 (394)
Q Consensus 263 ~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~-~~~~--~v~~~~g~~~~~~~~~~~~ADl~I~~SG-----t~tlEa 334 (394)
+++..+.++.+++++++++.+... ...+.... +.+. ++.+. +. .+++.++|+.||+++..|. .+.+||
T Consensus 213 ~a~~~l~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea 288 (365)
T cd03807 213 RAAALLLKKFPNARLLLVGDGPDR--ANLELLALKELGLEDKVILL-GE-RSDVPALLNALDVFVLSSLSEGFPNVLLEA 288 (365)
T ss_pred HHHHHHHHhCCCeEEEEecCCcch--hHHHHHHHHhcCCCceEEEc-cc-cccHHHHHHhCCEEEeCCccccCCcHHHHH
Confidence 999988777788998888765322 22333332 3222 35555 33 5789999999999999884 455699
Q ss_pred HHcCCCEEEEEcCChHHHHHH
Q 016179 335 QLARLPCVVAYRAHFLTEWFI 355 (394)
Q Consensus 335 ~a~G~P~Iv~y~~~~~~~~~a 355 (394)
+++|+|+|+ .+.+.....+.
T Consensus 289 ~a~g~PvI~-~~~~~~~e~~~ 308 (365)
T cd03807 289 MACGLPVVA-TDVGDNAELVG 308 (365)
T ss_pred HhcCCCEEE-cCCCChHHHhh
Confidence 999999886 56665555554
No 29
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.54 E-value=1.3e-12 Score=127.51 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=100.4
Q ss_pred hhhheeecCcccHHHHHhcC----CCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCC
Q 016179 174 FVDHILCILPNEEAICRLNG----LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGS 249 (394)
Q Consensus 174 ~~d~v~~~~p~~~~~~~~~g----~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGS 249 (394)
..+.+++.++..++.+.+.. .++.+++||+...... +.++...+++++++++.+++++.+.+
T Consensus 135 ~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~~~~ 200 (365)
T cd03825 135 LNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFR--------------PRDKREARKRLGLPADKKIILFGAVG 200 (365)
T ss_pred CCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccC--------------CCcHHHHHHHhCCCCCCeEEEEEecC
Confidence 34566777777777766543 3577889987554321 23456677888988877655553332
Q ss_pred cHHHHHhhHHHHHHHHHHhhhh-CCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCC--cchHHHHHHHcccceeh
Q 016179 250 RLQEVARMLPIFAKTVELLKDS-FPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS--SNLKYDAFSASRVALCT 326 (394)
Q Consensus 250 rg~ei~~~l~~ll~a~~~l~~~-~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~--~~~~~~~~~~ADl~I~~ 326 (394)
.. ...+....++++++.+.++ .+++++++++..... . .. ....++.+. |+. .+++.++|+.||+++..
T Consensus 201 ~~-~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~--~--~~---~~~~~v~~~-g~~~~~~~~~~~~~~ad~~l~p 271 (365)
T cd03825 201 GT-DPRKGFDELIEALKRLAERWKDDIELVVFGASDPE--I--PP---DLPFPVHYL-GSLNDDESLALIYSAADVFVVP 271 (365)
T ss_pred CC-ccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchh--h--hc---cCCCceEec-CCcCCHHHHHHHHHhCCEEEec
Confidence 22 1233467788898888654 467888877765321 1 11 122245554 332 23688999999999998
Q ss_pred h-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 327 S-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 327 S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
| |.+++||+++|+|+|. ++.+.....+
T Consensus 272 s~~e~~g~~~~Eam~~g~PvI~-~~~~~~~e~~ 303 (365)
T cd03825 272 SLQENFPNTAIEALACGTPVVA-FDVGGIPDIV 303 (365)
T ss_pred cccccccHHHHHHHhcCCCEEE-ecCCCChhhe
Confidence 8 6677799999999775 5666655544
No 30
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.54 E-value=9.1e-13 Score=133.13 Aligned_cols=272 Identities=13% Similarity=0.122 Sum_probs=153.4
Q ss_pred eEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEE-Ee---cChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHH
Q 016179 33 RVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFS-GV---GGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKE 107 (394)
Q Consensus 33 kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~-g~---gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~ 107 (394)
.|.|=+.+.| +.. +..++++|++.+|+ ++++ .. .|..+.+...........+ .+ +. -..
T Consensus 52 ~iW~Ha~s~G-e~~~~~~l~~~l~~~~~~-~~i~~t~~t~~~~~~~~~~~~~~~~~~~~---P~-d~----------~~~ 115 (425)
T PRK05749 52 LIWFHAVSVG-ETRAAIPLIRALRKRYPD-LPILVTTMTPTGSERAQALFGDDVEHRYL---PY-DL----------PGA 115 (425)
T ss_pred eEEEEeCCHH-HHHHHHHHHHHHHHhCCC-CcEEEeCCCccHHHHHHHhcCCCceEEEe---cC-Cc----------HHH
Confidence 3667666665 666 77899999998885 6543 22 2233322211110000001 11 10 023
Q ss_pred HHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecC---c--cccccCcchHHHHHHHhhhheeecC
Q 016179 108 TIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAP---S--FWAWKGGEARLKNLAAFVDHILCIL 182 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~---~--~wa~~~g~~r~~~l~~~~d~v~~~~ 182 (394)
+.+++++++||+++++.+...+.. ...+++. ++|+++..... + .|.+.. +..+++.+.+|.+++.+
T Consensus 116 ~~~~l~~~~Pd~v~~~~~~~~~~~-l~~~~~~------~ip~vl~~~~~~~~s~~~~~~~~--~~~r~~~~~~d~ii~~S 186 (425)
T PRK05749 116 VRRFLRFWRPKLVIIMETELWPNL-IAELKRR------GIPLVLANARLSERSFKRYQKFK--RFYRLLFKNIDLVLAQS 186 (425)
T ss_pred HHHHHHhhCCCEEEEEecchhHHH-HHHHHHC------CCCEEEEeccCChhhHHHHHHHH--HHHHHHHHhCCEEEECC
Confidence 456788999999998754323332 3333433 78965432111 1 111111 12234567799999999
Q ss_pred cccHHHHHhcCCC--eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHH
Q 016179 183 PNEEAICRLNGLA--ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPI 260 (394)
Q Consensus 183 p~~~~~~~~~g~~--~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ 260 (394)
+..++.+.+.|++ +.++||.-.|.... .. ......+.+++++ ++.++++ .+|....+ ...
T Consensus 187 ~~~~~~l~~~g~~~~i~vi~n~~~d~~~~-~~----------~~~~~~~~r~~~~--~~~~vil-~~~~~~~~----~~~ 248 (425)
T PRK05749 187 EEDAERFLALGAKNEVTVTGNLKFDIEVP-PE----------LAARAATLRRQLA--PNRPVWI-AASTHEGE----EEL 248 (425)
T ss_pred HHHHHHHHHcCCCCCcEecccccccCCCC-hh----------hHHHHHHHHHHhc--CCCcEEE-EeCCCchH----HHH
Confidence 9999999888864 56778853332210 00 0012345666776 4556654 44544333 345
Q ss_pred HHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCC---------------EEEecCCCcchHHHHHHHccccee
Q 016179 261 FAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVP---------------SILVPGGSSNLKYDAFSASRVALC 325 (394)
Q Consensus 261 ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~---------------v~~~~g~~~~~~~~~~~~ADl~I~ 325 (394)
++++++.+.++.|++++++++.+. +..+.+++.+++.++. +.+. +. .+++.++|+.||+++.
T Consensus 249 ll~A~~~l~~~~~~~~liivG~g~-~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~-~~-~~el~~~y~~aDi~~v 325 (425)
T PRK05749 249 VLDAHRALLKQFPNLLLILVPRHP-ERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLG-DT-MGELGLLYAIADIAFV 325 (425)
T ss_pred HHHHHHHHHHhCCCcEEEEcCCCh-hhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEE-ec-HHHHHHHHHhCCEEEE
Confidence 788888887777899988876542 2223455555544432 2222 21 3589999999999554
Q ss_pred -hh-----hHHHHHHHHcCCCEEEEEcCChH
Q 016179 326 -TS-----GTVAVELQLARLPCVVAYRAHFL 350 (394)
Q Consensus 326 -~S-----Gt~tlEa~a~G~P~Iv~y~~~~~ 350 (394)
.| |.+.+|+|++|+|+|....++..
T Consensus 326 ~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~ 356 (425)
T PRK05749 326 GGSLVKRGGHNPLEPAAFGVPVISGPHTFNF 356 (425)
T ss_pred CCCcCCCCCCCHHHHHHhCCCEEECCCccCH
Confidence 33 34556999999998875443433
No 31
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.54 E-value=2.8e-12 Score=127.18 Aligned_cols=163 Identities=13% Similarity=0.160 Sum_probs=106.8
Q ss_pred HHHhhhheeecCcccHHHHHhc--CC---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEE
Q 016179 171 LAAFVDHILCILPNEEAICRLN--GL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL 245 (394)
Q Consensus 171 l~~~~d~v~~~~p~~~~~~~~~--g~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Ill 245 (394)
..+.+|.+++.++..++.+.+. ++ ++.++.|++...... +..+...+++++++++.++|+.
T Consensus 141 ~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~ 206 (388)
T TIGR02149 141 AIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYK--------------PDDGNVVLDRYGIDRSRPYILF 206 (388)
T ss_pred HHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcC--------------CCchHHHHHHhCCCCCceEEEE
Confidence 4677999999999988876543 33 256777776443221 1234567788999888887777
Q ss_pred ECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcC--hHHHHHHHhhcCCC---CEEEecCCC-cchHHHHHHH
Q 016179 246 LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--VENYITGLIQKWPV---PSILVPGGS-SNLKYDAFSA 319 (394)
Q Consensus 246 lgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~--~~~~l~~~~~~~~~---~v~~~~g~~-~~~~~~~~~~ 319 (394)
+ | |-... +.+..++++++.+. ++.++++++++... +.+.+++...+.+. ++.++.++. .+++.++|++
T Consensus 207 ~-G-rl~~~-Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 280 (388)
T TIGR02149 207 V-G-RITRQ-KGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN 280 (388)
T ss_pred E-c-ccccc-cCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh
Confidence 6 3 33222 34677888888874 36777776654321 22334444333322 355544432 4679999999
Q ss_pred cccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 320 SRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 320 ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
||++|..| |.+.+||+++|+|+|+ .+.+.....+
T Consensus 281 aDv~v~ps~~e~~g~~~lEA~a~G~PvI~-s~~~~~~e~i 319 (388)
T TIGR02149 281 AEVFVCPSIYEPLGIVNLEAMACGTPVVA-SATGGIPEVV 319 (388)
T ss_pred CCEEEeCCccCCCChHHHHHHHcCCCEEE-eCCCCHHHHh
Confidence 99999987 6777899999999886 5566655555
No 32
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.52 E-value=8.9e-12 Score=125.26 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=104.6
Q ss_pred HHHhhhheeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEEC
Q 016179 171 LAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 247 (394)
Q Consensus 171 l~~~~d~v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Illlg 247 (394)
+.+.+|.+++.++..++.+.+.|++ +.++.|.+..+.. .+. ....+...+++++++++.++|+. .
T Consensus 168 ~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~i~~-~ 235 (412)
T PRK10307 168 LLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARF--QPV---------ADADVDALRAQLGLPDGKKIVLY-S 235 (412)
T ss_pred HHhhCCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhc--CCC---------CccchHHHHHHcCCCCCCEEEEE-c
Confidence 4667999999999999988777653 5677777643321 110 00123457788999877666655 4
Q ss_pred CCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC-CEEEecCCC-cchHHHHHHHccccee
Q 016179 248 GSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGS-SNLKYDAFSASRVALC 325 (394)
Q Consensus 248 GSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~-~v~~~~g~~-~~~~~~~~~~ADl~I~ 325 (394)
|+.+. .+.+..++++++.+.+ .+++++++++.+. . .+.+++..++.+. ++.+. |+. .+++.++|++||+.|.
T Consensus 236 G~l~~--~kg~~~li~a~~~l~~-~~~~~l~ivG~g~-~-~~~l~~~~~~~~l~~v~f~-G~~~~~~~~~~~~~aDi~v~ 309 (412)
T PRK10307 236 GNIGE--KQGLELVIDAARRLRD-RPDLIFVICGQGG-G-KARLEKMAQCRGLPNVHFL-PLQPYDRLPALLKMADCHLL 309 (412)
T ss_pred Ccccc--ccCHHHHHHHHHHhcc-CCCeEEEEECCCh-h-HHHHHHHHHHcCCCceEEe-CCCCHHHHHHHHHhcCEeEE
Confidence 55542 2346778899988754 5789999887653 2 3445555554333 46665 442 4689999999999887
Q ss_pred hh--h-------HHHHHHHHcCCCEEEEEc
Q 016179 326 TS--G-------TVAVELQLARLPCVVAYR 346 (394)
Q Consensus 326 ~S--G-------t~tlEa~a~G~P~Iv~y~ 346 (394)
.| + +..+|++++|+|+|....
T Consensus 310 ps~~e~~~~~~p~kl~eama~G~PVi~s~~ 339 (412)
T PRK10307 310 PQKAGAADLVLPSKLTNMLASGRNVVATAE 339 (412)
T ss_pred eeccCcccccCcHHHHHHHHcCCCEEEEeC
Confidence 55 2 223599999999887543
No 33
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.50 E-value=6e-12 Score=120.43 Aligned_cols=283 Identities=14% Similarity=0.055 Sum_probs=158.9
Q ss_pred eEEEEeCC--chHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHH
Q 016179 33 RVFIVAGE--VSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETI 109 (394)
Q Consensus 33 kIlI~aG~--~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~ 109 (394)
||++.+.. .||+.. ...++++|.+.+.+ +.++......-.......... ..... ...............+.
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~-v~v~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~ 74 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYD-VTLVVLRDEGDYLELLPSNVK--LIPVR---VLKLKSLRDLLAILRLR 74 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCce-EEEEEcCCCCccccccccchh--hhcee---eeecccccchhHHHHHH
Confidence 46555544 456544 78899999776664 776665432211111110000 00000 00001111222344567
Q ss_pred HHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCcccccc-CcchH----HHHHHHhhhheeecCcc
Q 016179 110 EAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWK-GGEAR----LKNLAAFVDHILCILPN 184 (394)
Q Consensus 110 ~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~-~g~~r----~~~l~~~~d~v~~~~p~ 184 (394)
+++++.+||+|++.+. ..+..+ ..+..+. ++|++++. +..|... ..... ...+.+.+|.+++.++.
T Consensus 75 ~~~~~~~~dii~~~~~-~~~~~~-~~~~~~~-----~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 145 (353)
T cd03811 75 RLLRKEKPDVVISHLT-TTPNVL-ALLAARL-----GTKLIVWE--HNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEG 145 (353)
T ss_pred HHHHhcCCCEEEEcCc-cchhHH-HHHHhhc-----CCceEEEE--cCcchhhhccchhHHHHHHhhccccceEEEeccc
Confidence 7888889999998754 123322 2333221 46754332 2222111 10001 23356789999999999
Q ss_pred cHHHHHhcCC----CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHH
Q 016179 185 EEAICRLNGL----AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPI 260 (394)
Q Consensus 185 ~~~~~~~~g~----~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ 260 (394)
.++.+.+.+. ++.++.||+....... ..... .+++.+.+.++++.+ |+.. +- +....
T Consensus 146 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~i~~~-g~~~-~~-k~~~~ 206 (353)
T cd03811 146 VKEDLLKLLGIPPDKIEVIYNPIDIEEIRA--------------LAEEP--LELGIPPDGPVILAV-GRLS-PQ-KGFDT 206 (353)
T ss_pred hhhhHHHhhcCCccccEEecCCcChhhcCc--------------ccchh--hhcCCCCCceEEEEE-ecch-hh-cChHH
Confidence 9888765432 4778888876543210 01111 034455555555555 4443 22 34667
Q ss_pred HHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCCcchHHHHHHHcccceehh-----hHHHHH
Q 016179 261 FAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVE 333 (394)
Q Consensus 261 ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlE 333 (394)
++++++.+.++.+++++++++.+. . .+.+++...+.+. ++.+. ++ .+++.++++.||++|..| |++.+|
T Consensus 207 ~i~~~~~l~~~~~~~~l~i~G~~~-~-~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~~d~~i~ps~~e~~~~~~~E 282 (353)
T cd03811 207 LIRAFALLRKEGPDARLVILGDGP-L-REELEALAKELGLADRVHFL-GF-QSNPYPYLKAADLFVLSSRYEGFPNVLLE 282 (353)
T ss_pred HHHHHHHhhhcCCCceEEEEcCCc-c-HHHHHHHHHhcCCCccEEEe-cc-cCCHHHHHHhCCEEEeCcccCCCCcHHHH
Confidence 889999987766789988887653 2 2334444444332 45555 44 578999999999999887 556679
Q ss_pred HHHcCCCEEEEEcCChHHHHH
Q 016179 334 LQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 334 a~a~G~P~Iv~y~~~~~~~~~ 354 (394)
++++|+|+|+ .+.+.....+
T Consensus 283 a~~~G~PvI~-~~~~~~~e~i 302 (353)
T cd03811 283 AMALGTPVVA-TDCPGPREIL 302 (353)
T ss_pred HHHhCCCEEE-cCCCChHHHh
Confidence 9999999876 5655655554
No 34
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.50 E-value=8.4e-12 Score=120.95 Aligned_cols=288 Identities=16% Similarity=0.116 Sum_probs=159.3
Q ss_pred eEEEEeCC----chHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHH
Q 016179 33 RVFIVAGE----VSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKE 107 (394)
Q Consensus 33 kIlI~aG~----~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~ 107 (394)
||++++.. .||+-. ...++++|.+.+.+ +.++................. .... ...........+.....
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~-v~v~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~ 75 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHE-VYVVAPSYPGAPEEEEVVVVR--PFRV--PTFKYPDFRLPLPIPRA 75 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCe-EEEEeCCCCCCCccccccccc--cccc--ccchhhhhhccccHHHH
Confidence 46665544 356555 77899999987764 776655432221111000000 0000 00001111111222334
Q ss_pred HHHHHHhcCCCEEEEeCCCCchH-HHHHHHHHhccccCCCCCeEEEeecCcccc------------ccCcc--hHHHHHH
Q 016179 108 TIEAALLFRPHAVVTVDSKGFSF-RLLKQLRARYSHERLNGPAHFHYVAPSFWA------------WKGGE--ARLKNLA 172 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~~~~f~~-~la~~l~~~~~~~~~~ip~~~~yv~~~~wa------------~~~g~--~r~~~l~ 172 (394)
+.+.+++.+||+|+..+ + +.. .++..+.++. ++|++..+ +..|. +.... ...+++.
T Consensus 76 ~~~~~~~~~~Div~~~~-~-~~~~~~~~~~~~~~-----~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (374)
T cd03817 76 LIIILKELGPDIVHTHT-P-FSLGLLGLRVARKL-----GIPVVATY--HTMYEDYTHYVPLGRLLARAVVRRKLSRRFY 146 (374)
T ss_pred HHHHHhhcCCCEEEECC-c-hhhhhHHHHHHHHc-----CCCEEEEe--cCCHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 45567889999988754 3 332 2333333332 67854322 11110 00000 0112346
Q ss_pred HhhhheeecCcccHHHHHhcCCC--eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCc
Q 016179 173 AFVDHILCILPNEEAICRLNGLA--ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSR 250 (394)
Q Consensus 173 ~~~d~v~~~~p~~~~~~~~~g~~--~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSr 250 (394)
+.+|.+++.++..++.+.+.+.+ +.++.+++...... .......+++++++++.++|+. .|+.
T Consensus 147 ~~~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~-~G~~ 211 (374)
T cd03817 147 NRCDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFE--------------PVDGDDERRKLGIPEDEPVLLY-VGRL 211 (374)
T ss_pred hhCCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccC--------------ccchhHHHHhcCCCCCCeEEEE-Eeee
Confidence 67999999999988888877654 45666665433221 1122334566777776665555 4554
Q ss_pred HHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEEEecCCCcchHHHHHHHcccceehh-
Q 016179 251 LQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGSSNLKYDAFSASRVALCTS- 327 (394)
Q Consensus 251 g~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~ADl~I~~S- 327 (394)
+. .+....++++++.+.++.+++++++.+++. ..+.+++...+.+ .++.+......+++.++|+.||+++..|
T Consensus 212 ~~--~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~ 287 (374)
T cd03817 212 AK--EKNIDFLIRAFARLLKEEPDVKLVIVGDGP--EREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST 287 (374)
T ss_pred ec--ccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc
Confidence 42 234567888888887766789988887653 2334454443332 2466553221468999999999999887
Q ss_pred ----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 328 ----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 328 ----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|...+|++++|+|+|+ .+.+.....+
T Consensus 288 ~e~~~~~~~Ea~~~g~PvI~-~~~~~~~~~i 317 (374)
T cd03817 288 TETQGLVLLEAMAAGLPVVA-VDAPGLPDLV 317 (374)
T ss_pred ccCcChHHHHHHHcCCcEEE-eCCCChhhhe
Confidence 3455699999999886 5555555444
No 35
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.49 E-value=1.4e-11 Score=119.11 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcc
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPN 184 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~ 184 (394)
...+.+++++.+||+|++.....+...+...++.. ++|++++. +..|...+ ......+..|.+++.++.
T Consensus 85 ~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~------~~~~i~~~--hd~~~~~~---~~~~~~~~~d~ii~~s~~ 153 (359)
T cd03823 85 VAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDR------GIPIVLTL--HDYWLICP---RQGLFKKGGDAVIAPSRF 153 (359)
T ss_pred HHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhc------CCCEEEEE--eeeeeecc---hhhhhccCCCEEEEeCHH
Confidence 45567888899999998765322333333333333 67864332 33332221 122223344999999999
Q ss_pred cHHHHHhcCC---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHH
Q 016179 185 EEAICRLNGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIF 261 (394)
Q Consensus 185 ~~~~~~~~g~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~l 261 (394)
..+.+.+.+. ++.++.|++...... ... + +.+.+.++++.+ |+... .+.+..+
T Consensus 154 ~~~~~~~~~~~~~~~~vi~n~~~~~~~~---------------~~~-----~-~~~~~~~~i~~~-G~~~~--~k~~~~l 209 (359)
T cd03823 154 LLDRYVANGLFAEKISVIRNGIDLDRAK---------------RPR-----R-APPGGRLRFGFI-GQLTP--HKGVDLL 209 (359)
T ss_pred HHHHHHHcCCCccceEEecCCcChhhcc---------------ccc-----c-CCCCCceEEEEE-ecCcc--ccCHHHH
Confidence 9888877765 466777776443321 000 0 233455555555 44332 2335678
Q ss_pred HHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehh------hHHHHHHH
Q 016179 262 AKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS------GTVAVELQ 335 (394)
Q Consensus 262 l~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S------Gt~tlEa~ 335 (394)
+++++.+.+ +++++++.+..... .. ..... ....++.+......+++.++|+.||++|..| |.+.+|++
T Consensus 210 i~~~~~l~~--~~~~l~i~G~~~~~-~~-~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~ 284 (359)
T cd03823 210 LEAFKRLPR--GDIELVIVGNGLEL-EE-ESYEL-EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREAL 284 (359)
T ss_pred HHHHHHHHh--cCcEEEEEcCchhh-hH-HHHhh-cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHH
Confidence 888888865 68898887765322 11 11111 2223566653321478999999999999876 23456999
Q ss_pred HcCCCEEEEEcCChHHHHHH
Q 016179 336 LARLPCVVAYRAHFLTEWFI 355 (394)
Q Consensus 336 a~G~P~Iv~y~~~~~~~~~a 355 (394)
++|+|+|. .+.+.....+.
T Consensus 285 a~G~Pvi~-~~~~~~~e~i~ 303 (359)
T cd03823 285 AAGVPVIA-SDIGGMAELVR 303 (359)
T ss_pred HCCCCEEE-CCCCCHHHHhc
Confidence 99999886 56666555553
No 36
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.49 E-value=1.7e-11 Score=123.76 Aligned_cols=301 Identities=11% Similarity=0.000 Sum_probs=157.6
Q ss_pred CCceEEEEeCC-chHHHHHHHHHHHHHhcCCCCeEEEEecChh-h----HhccCccc-cccCcceeccHHHhhhhHHHHH
Q 016179 30 GELRVFIVAGE-VSGDSIGSRLMSAMKKLAPLPVSFSGVGGSM-M----SEQGMKSL-FPMEDIAVMGIWELLPHIYKFR 102 (394)
Q Consensus 30 ~~~kIlI~aG~-~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~-m----~~~g~~~~-~~~~~l~~~G~~~~l~~~~~~~ 102 (394)
.++||.+.+-. .+++.....+++.|.+++.+ +.+++..+.. . +..|+... ++...-........+..+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~-V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWK-VDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVL 80 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCce-EEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHHHHHHH
Confidence 35677654444 45566677899999888775 8877654421 1 12233321 1111100011112222222222
Q ss_pred HHHHHHHH-HHHhcCCCEEEEeCCCCchHHH-HHHHHHhccccCCCCCeEEEeecCcccc-------c-cCcc----hHH
Q 016179 103 VRLKETIE-AALLFRPHAVVTVDSKGFSFRL-LKQLRARYSHERLNGPAHFHYVAPSFWA-------W-KGGE----ARL 168 (394)
Q Consensus 103 ~~~~~~~~-~i~~~~PD~Vi~~~~~~f~~~l-a~~l~~~~~~~~~~ip~~~~yv~~~~wa-------~-~~g~----~r~ 168 (394)
..+.++.. +++..+||+|+++..+.++..+ +..++++. +.|+++. .+..|- + .... .+.
T Consensus 81 ~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~-----~~~~V~~--~h~~~~~~~~~~~~~~~~~~~~~~~~ 153 (415)
T cd03816 81 WQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLR-----RTKLIID--WHNYGYTILALKLGENHPLVRLAKWY 153 (415)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh-----CCeEEEE--cCCchHHHHhcccCCCCHHHHHHHHH
Confidence 22223322 4566789999976434444333 32223221 5686432 233331 0 0000 011
Q ss_pred H-HHHHhhhheeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHh------------
Q 016179 169 K-NLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKN------------ 232 (394)
Q Consensus 169 ~-~l~~~~d~v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~------------ 232 (394)
+ .+.+.+|.+++.++..++.+.++|.+ +.++-|-..+.+.... ....+...++
T Consensus 154 e~~~~~~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~~~~f~p~~-----------~~~~~~~~~~~~~~~~~~~~~~ 222 (415)
T cd03816 154 EKLFGRLADYNLCVTKAMKEDLQQFNNWKIRATVLYDRPPEQFRPLP-----------LEEKHELFLKLAKTFLTRELRI 222 (415)
T ss_pred HHHHhhcCCEeeecCHHHHHHHHhhhccCCCeeecCCCCHHHceeCc-----------HHHHHHHHHhcccccccccccc
Confidence 1 24677999999999999888765543 4444332112221100 0000011110
Q ss_pred -hcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhh------hCCCeEEEEEeCCCcChHHHHHHHhhcCCC-CEEE
Q 016179 233 -KYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKD------SFPELITVIHVAPNRHVENYITGLIQKWPV-PSIL 304 (394)
Q Consensus 233 -~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~------~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~-~v~~ 304 (394)
..++.++.+.+++..|..+ +. +.+..+++|++.+.+ ..|++++++++++. . ++.+++..++.+. ++.+
T Consensus 223 ~~~~~~~~~~~vi~~~grl~-~~-K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~-~-~~~l~~~~~~~~l~~~~~ 298 (415)
T cd03816 223 GAVQLSEERPALLVSSTSWT-PD-EDFGILLDALVAYEKSAATGPKLPKLLCIITGKGP-L-KEKYLERIKELKLKKVTI 298 (415)
T ss_pred ccceecCCCceEEEEecccc-CC-CCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCc-c-HHHHHHHHHHcCCCcEEE
Confidence 1233344555555444433 22 346778899988864 23679999888763 2 3456666665554 3555
Q ss_pred ecCCC-cchHHHHHHHcccceeh----h----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 305 VPGGS-SNLKYDAFSASRVALCT----S----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 305 ~~g~~-~~~~~~~~~~ADl~I~~----S----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
+.|+. .++++++|++||++++. + |...+|+|+||+|+|. +..+.....+
T Consensus 299 ~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~-s~~~~~~eiv 356 (415)
T cd03816 299 RTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-LDFKCIDELV 356 (415)
T ss_pred EcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEE-eCCCCHHHHh
Confidence 54432 57899999999999852 2 2345699999999876 5665555544
No 37
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.49 E-value=4.7e-12 Score=125.26 Aligned_cols=277 Identities=14% Similarity=0.114 Sum_probs=152.7
Q ss_pred EeCCchH-HHHHHHHHHHHHhcCCCCeEEEEecC-hhh----HhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHH
Q 016179 37 VAGEVSG-DSIGSRLMSAMKKLAPLPVSFSGVGG-SMM----SEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIE 110 (394)
Q Consensus 37 ~aG~~sG-h~~a~~l~~~L~~~~~~~~~~~g~gg-~~m----~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~ 110 (394)
.+.+.|| ..+...++++|.+.+.+ +.++.... ..+ .+.|+... . +...+ .. .+..+.++.+
T Consensus 9 ~~~~~GG~e~~~~~l~~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~i~~~-~---~~~~~----~~----~~~~~~~l~~ 75 (374)
T TIGR03088 9 YRFDVGGLENGLVNLINHLPADRYR-HAVVALTEVSAFRKRIQRPDVAFY-A---LHKQP----GK----DVAVYPQLYR 75 (374)
T ss_pred CCCCCCcHHHHHHHHHhhccccccc-eEEEEcCCCChhHHHHHhcCceEE-E---eCCCC----CC----ChHHHHHHHH
Confidence 3444455 45588899999775443 55665432 122 23344321 1 11000 01 1233456778
Q ss_pred HHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCc--cccccCcc---hHHHH-HHHhhhheeecCcc
Q 016179 111 AALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPS--FWAWKGGE---ARLKN-LAAFVDHILCILPN 184 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~--~wa~~~g~---~r~~~-l~~~~d~v~~~~p~ 184 (394)
++++++||+|++.+...+...+++++ . ++|..+|- .+. .+.+.... ...++ ..+.+|.+++.++.
T Consensus 76 ~l~~~~~Divh~~~~~~~~~~~~~~~--~------~~~~~i~~-~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~ 146 (374)
T TIGR03088 76 LLRQLRPDIVHTRNLAALEAQLPAAL--A------GVPARIHG-EHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRD 146 (374)
T ss_pred HHHHhCCCEEEEcchhHHHHHHHHHh--c------CCCeEEEe-ecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHH
Confidence 88999999999764322222222221 1 56654442 221 11111000 01222 35678999999998
Q ss_pred cHHHHHh-cCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHH
Q 016179 185 EEAICRL-NGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPI 260 (394)
Q Consensus 185 ~~~~~~~-~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ 260 (394)
.++.+.+ .+++ +.++.|++..... .+ ...++...+++...+++.++|+.+ |.. .+ .+....
T Consensus 147 ~~~~~~~~~~~~~~~~~vi~ngvd~~~~--~~----------~~~~~~~~~~~~~~~~~~~~i~~v-Grl-~~-~Kg~~~ 211 (374)
T TIGR03088 147 LEDWLRGPVKVPPAKIHQIYNGVDTERF--HP----------SRGDRSPILPPDFFADESVVVGTV-GRL-QA-VKDQPT 211 (374)
T ss_pred HHHHHHHhcCCChhhEEEeccCcccccc--CC----------CccchhhhhHhhcCCCCCeEEEEE-ecC-Cc-ccCHHH
Confidence 8887754 4543 5667777744321 11 001122223333344555555554 333 22 234677
Q ss_pred HHHHHHHhhhhCC----CeEEEEEeCCCcChHHHHHHHhhcCCCC-EEEecCCCcchHHHHHHHcccceehh-----hHH
Q 016179 261 FAKTVELLKDSFP----ELITVIHVAPNRHVENYITGLIQKWPVP-SILVPGGSSNLKYDAFSASRVALCTS-----GTV 330 (394)
Q Consensus 261 ll~a~~~l~~~~~----~~~~vi~~g~~~~~~~~l~~~~~~~~~~-v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~ 330 (394)
+++++..+.++.+ ++++++++.+. . .+.+++..++.+.. ...+.|+ .+|+.++|+.||++|..| |.+
T Consensus 212 li~a~~~l~~~~~~~~~~~~l~i~G~g~-~-~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~adi~v~pS~~Eg~~~~ 288 (374)
T TIGR03088 212 LVRAFALLVRQLPEGAERLRLVIVGDGP-A-RGACEQMVRAAGLAHLVWLPGE-RDDVPALMQALDLFVLPSLAEGISNT 288 (374)
T ss_pred HHHHHHHHHHhCcccccceEEEEecCCc-h-HHHHHHHHHHcCCcceEEEcCC-cCCHHHHHHhcCEEEeccccccCchH
Confidence 8889888866544 68888887653 2 23455555554432 2233454 578999999999999887 556
Q ss_pred HHHHHHcCCCEEEEEcCChHHHHH
Q 016179 331 AVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 331 tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
.+||+++|+|+|+ .+.+.....+
T Consensus 289 ~lEAma~G~Pvv~-s~~~g~~e~i 311 (374)
T TIGR03088 289 ILEAMASGLPVIA-TAVGGNPELV 311 (374)
T ss_pred HHHHHHcCCCEEE-cCCCCcHHHh
Confidence 6799999999886 5555555444
No 38
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.48 E-value=1.5e-11 Score=119.94 Aligned_cols=278 Identities=12% Similarity=0.035 Sum_probs=154.6
Q ss_pred eEEEEeCC--chHHH-HHHHHHHHHHhcCCCCeEEEEecChh--h----HhccCccccccCcceeccHHHhhhhHHHHHH
Q 016179 33 RVFIVAGE--VSGDS-IGSRLMSAMKKLAPLPVSFSGVGGSM--M----SEQGMKSLFPMEDIAVMGIWELLPHIYKFRV 103 (394)
Q Consensus 33 kIlI~aG~--~sGh~-~a~~l~~~L~~~~~~~~~~~g~gg~~--m----~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~ 103 (394)
||++++.. .||.- +...++++|.+.+.+ +.++...+.. . ...++... . +. .... ....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~-v~~i~~~~~~~~~~~~~~~~~~~~~-~---~~-----~~~~---~~~~ 67 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQ-FDFLVTSKEEGDYDDEIEKLGGKIY-Y---IP-----ARKK---NPLK 67 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceE-EEEEEeCCCCcchHHHHHHcCCeEE-E---ec-----CCCc---cHHH
Confidence 46655553 45544 478899999866554 6666543321 1 11222211 0 00 0001 1122
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHH------HHHHHhhhh
Q 016179 104 RLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARL------KNLAAFVDH 177 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~------~~l~~~~d~ 177 (394)
.+..+.+++++.+||+|++.+.. ...++..+.++. +.|.++.......|......... ..+.+.+|.
T Consensus 68 ~~~~~~~~~~~~~~Dvv~~~~~~--~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (358)
T cd03812 68 YFKKLYKLIKKNKYDIVHVHGSS--ASGFILLAAKKA-----GVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATD 140 (358)
T ss_pred HHHHHHHHHhcCCCCEEEEeCcc--hhHHHHHHHhhC-----CCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCE
Confidence 23345567788999999986432 223333333221 45643321111111111100011 224667899
Q ss_pred eeecCcccHHHHHhc--CCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHH
Q 016179 178 ILCILPNEEAICRLN--GLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVA 255 (394)
Q Consensus 178 v~~~~p~~~~~~~~~--g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~ 255 (394)
+++.++...+.+... .-++.++-|++........ +..++ .+++.+..++.++|+..| +-. . .
T Consensus 141 ~i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~------------~~~~~-~~~~~~~~~~~~~i~~vG-r~~-~-~ 204 (358)
T cd03812 141 YLACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFN------------EEIRK-KRRELGILEDKFVIGHVG-RFS-E-Q 204 (358)
T ss_pred EEEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCC------------chhhh-HHHHcCCCCCCEEEEEEe-ccc-c-c
Confidence 999999888776542 2346666666543221110 11122 245666777777666653 332 2 2
Q ss_pred hhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEEEecCCCcchHHHHHHHcccceehh-----h
Q 016179 256 RMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGSSNLKYDAFSASRVALCTS-----G 328 (394)
Q Consensus 256 ~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~ADl~I~~S-----G 328 (394)
+.+..+++++..+.++.+++++++++.+.. .+.+++..++.+ .++.+. |+ .+++.++++.||++|..| |
T Consensus 205 Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~--~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~adi~v~ps~~E~~~ 280 (358)
T cd03812 205 KNHEFLIEIFAELLKKNPNAKLLLVGDGEL--EEEIKKKVKELGLEDKVIFL-GV-RNDVPELLQAMDVFLFPSLYEGLP 280 (358)
T ss_pred cChHHHHHHHHHHHHhCCCeEEEEEeCCch--HHHHHHHHHhcCCCCcEEEe-cc-cCCHHHHHHhcCEEEecccccCCC
Confidence 346778899999987788999999886532 334454444433 246665 44 578999999999999988 4
Q ss_pred HHHHHHHHcCCCEEEEEcCChHH
Q 016179 329 TVAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 329 t~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
.+.+|||++|+|+|.. ..+...
T Consensus 281 ~~~lEAma~G~PvI~s-~~~~~~ 302 (358)
T cd03812 281 LVLIEAQASGLPCILS-DTITKE 302 (358)
T ss_pred HHHHHHHHhCCCEEEE-cCCchh
Confidence 5556999999998864 444433
No 39
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.47 E-value=4.1e-11 Score=114.96 Aligned_cols=280 Identities=13% Similarity=0.062 Sum_probs=155.5
Q ss_pred hH-HHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHHHHhcCCCEE
Q 016179 42 SG-DSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAV 120 (394)
Q Consensus 42 sG-h~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~i~~~~PD~V 120 (394)
|| ..+...++++|.+.+.+ +.++..................... .. ................+.+.+++.+||+|
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~-v~i~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dii 89 (374)
T cd03801 14 GGAERHVLELARALAARGHE-VTVLTPGDGGLPDEEEVGGIVVVRP--PP-LLRVRRLLLLLLLALRLRRLLRRERFDVV 89 (374)
T ss_pred CcHhHHHHHHHHHHHhcCce-EEEEecCCCCCCceeeecCcceecC--Cc-ccccchhHHHHHHHHHHHHHhhhcCCcEE
Confidence 44 44488899999876654 7766654322111100000000000 00 01111111223334556777888899999
Q ss_pred EEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCc----------chHHHHHHHhhhheeecCcccHHHHH
Q 016179 121 VTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGG----------EARLKNLAAFVDHILCILPNEEAICR 190 (394)
Q Consensus 121 i~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g----------~~r~~~l~~~~d~v~~~~p~~~~~~~ 190 (394)
++.+........ .+.+. .++|++++. +..|..... ......+.+.+|.+++.++...+.+.
T Consensus 90 ~~~~~~~~~~~~--~~~~~-----~~~~~i~~~--h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~ 160 (374)
T cd03801 90 HAHDWLALLAAA--LAARL-----LGIPLVLTV--HGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160 (374)
T ss_pred EEechhHHHHHH--HHHHh-----cCCcEEEEe--ccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 987532222221 22222 167864433 222221110 00112357789999999999998887
Q ss_pred hcC-C---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHH
Q 016179 191 LNG-L---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVE 266 (394)
Q Consensus 191 ~~g-~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~ 266 (394)
+.+ . ++.++.||+...... ......+.....+.+.++++.+| +.. . .+.+..+++++.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~i~~~g-~~~-~-~k~~~~~i~~~~ 222 (374)
T cd03801 161 ELGGVPPEKITVIPNGVDTERFR---------------PAPRAARRRLGIPEDEPVILFVG-RLV-P-RKGVDLLLEALA 222 (374)
T ss_pred hcCCCCCCcEEEecCcccccccC---------------ccchHHHhhcCCcCCCeEEEEec-chh-h-hcCHHHHHHHHH
Confidence 654 3 477888887543221 00122334445555666666654 333 2 234567888998
Q ss_pred HhhhhCCCeEEEEEeCCCcChHHHHHHHhhc--CCCCEEEecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCC
Q 016179 267 LLKDSFPELITVIHVAPNRHVENYITGLIQK--WPVPSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARL 339 (394)
Q Consensus 267 ~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~--~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~ 339 (394)
.+.+..+++++++.+.+. ..+.+++...+ ...++.+......+++.++|+.||++|..+ |+..+||+++|+
T Consensus 223 ~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~ 300 (374)
T cd03801 223 KLRKEYPDVRLVIVGDGP--LREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL 300 (374)
T ss_pred HHhhhcCCeEEEEEeCcH--HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCC
Confidence 887777789988887542 23344443322 222466553321378999999999999876 445569999999
Q ss_pred CEEEEEcCChHHHHHH
Q 016179 340 PCVVAYRAHFLTEWFI 355 (394)
Q Consensus 340 P~Iv~y~~~~~~~~~a 355 (394)
|+|+ .+.+....++.
T Consensus 301 pvI~-~~~~~~~~~~~ 315 (374)
T cd03801 301 PVVA-SDVGGIPEVVE 315 (374)
T ss_pred cEEE-eCCCChhHHhc
Confidence 9776 56566555553
No 40
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.47 E-value=3e-11 Score=115.98 Aligned_cols=278 Identities=15% Similarity=0.078 Sum_probs=152.4
Q ss_pred eEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChh---hHhccCccccccCcceeccHHHhhhhHHHHHHHHHHH
Q 016179 33 RVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSM---MSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKET 108 (394)
Q Consensus 33 kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~---m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~ 108 (394)
||++++...+|+.. ...++++|++.+.+ +.++...... ....++... .++... ........+..+.++
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~ 72 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYE-VHVVAPPGDELEELEALGVKVI----PIPLDR---RGINPFKDLKALLRL 72 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCe-eEEEecCCCcccccccCCceEE----eccccc---cccChHhHHHHHHHH
Confidence 57777777667655 78899999877664 7766554322 223333221 111110 001111223344567
Q ss_pred HHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcc------hHH-HHHHHhhhheeec
Q 016179 109 IEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGE------ARL-KNLAAFVDHILCI 181 (394)
Q Consensus 109 ~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~------~r~-~~l~~~~d~v~~~ 181 (394)
.+.+++.+||+|++... .+..++....+.. +.|.+++......|...... .+. +.+.+.+|.+++.
T Consensus 73 ~~~~~~~~~dvv~~~~~--~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 145 (359)
T cd03808 73 YRLLRKERPDIVHTHTP--KPGILGRLAARLA-----GVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQ 145 (359)
T ss_pred HHHHHhcCCCEEEEccc--cchhHHHHHHHHc-----CCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEc
Confidence 78888999999987642 1222222222211 22323443221111111000 011 2246678999999
Q ss_pred CcccHHHHHhcCC-----CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHh
Q 016179 182 LPNEEAICRLNGL-----AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVAR 256 (394)
Q Consensus 182 ~p~~~~~~~~~g~-----~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~ 256 (394)
++...+.+.+.+. .+.+.++++...... . .... .+++.++++.+| +-. -.+
T Consensus 146 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~------~~~~~~~i~~~G-~~~--~~k 201 (359)
T cd03808 146 NEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFS--P-------------SPEP------IPEDDPVFLFVA-RLL--KDK 201 (359)
T ss_pred CHHHHHHHHHhcCCCcCceEEecCCCCChhhcC--c-------------cccc------cCCCCcEEEEEe-ccc--ccc
Confidence 9999888876653 133445544332211 0 0000 133455566654 332 123
Q ss_pred hHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHH-hhcCC--CCEEEecCCCcchHHHHHHHcccceehh-----h
Q 016179 257 MLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGL-IQKWP--VPSILVPGGSSNLKYDAFSASRVALCTS-----G 328 (394)
Q Consensus 257 ~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~-~~~~~--~~v~~~~g~~~~~~~~~~~~ADl~I~~S-----G 328 (394)
.+..++++++.+.+..+++++++++....... .... ..... .++.+.. + .+++.++|+.||++|..| |
T Consensus 202 ~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~--~~~~~~~~~~~~~~v~~~g-~-~~~~~~~~~~adi~i~ps~~e~~~ 277 (359)
T cd03808 202 GIDELLEAARILKAKGPNVRLLLVGDGDEENP--AAILEIEKLGLEGRVEFLG-F-RDDVPELLAAADVFVLPSYREGLP 277 (359)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEcCCCcchh--hHHHHHHhcCCcceEEEee-c-cccHHHHHHhccEEEecCcccCcc
Confidence 46678889988877678899998887643221 1111 22222 2466653 3 578999999999999988 4
Q ss_pred HHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 329 TVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 329 t~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
...+||+++|+|+|+ .+.+.....+
T Consensus 278 ~~~~Ea~~~G~Pvi~-s~~~~~~~~i 302 (359)
T cd03808 278 RVLLEAMAMGRPVIA-TDVPGCREAV 302 (359)
T ss_pred hHHHHHHHcCCCEEE-ecCCCchhhh
Confidence 566699999999886 4554444444
No 41
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.47 E-value=1.7e-11 Score=125.71 Aligned_cols=120 Identities=14% Similarity=0.179 Sum_probs=85.2
Q ss_pred hHHHHhhcCCCC--CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEE
Q 016179 227 SEDFKNKYSVPS--GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSIL 304 (394)
Q Consensus 227 ~~~~r~~lgl~~--~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~ 304 (394)
+..+++++|+++ +.++|+.+| |-.+.| .+..++++++.+.+. ++++++++.+...+++.+++...+.+.++.+
T Consensus 276 k~~l~~~~gl~~~~~~~~i~~vG--rl~~~K-g~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~ 350 (473)
T TIGR02095 276 KEALQEELGLPVDDDVPLFGVIS--RLTQQK-GVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRV 350 (473)
T ss_pred HHHHHHHcCCCccCCCCEEEEEe--cCcccc-ChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEE
Confidence 466888999986 677777763 443333 467889999988753 5899988876434455566655555545666
Q ss_pred ecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHH
Q 016179 305 VPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTE 352 (394)
Q Consensus 305 ~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~ 352 (394)
..++..++++.+|++||+++..| |.+.+|||++|+|+|+ .+.+.+..
T Consensus 351 ~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~gg~~e 402 (473)
T TIGR02095 351 IIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTGGLAD 402 (473)
T ss_pred EEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCCCccc
Confidence 65543344778999999999988 6777899999999886 55555443
No 42
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.47 E-value=1e-11 Score=124.44 Aligned_cols=281 Identities=14% Similarity=0.114 Sum_probs=154.5
Q ss_pred eEEEEeC----CchH-HHHHHHHHHHHHhcCCCCeEEEEecCh-h----hHhccCccccccCcceeccHHHhhhhHHHHH
Q 016179 33 RVFIVAG----EVSG-DSIGSRLMSAMKKLAPLPVSFSGVGGS-M----MSEQGMKSLFPMEDIAVMGIWELLPHIYKFR 102 (394)
Q Consensus 33 kIlI~aG----~~sG-h~~a~~l~~~L~~~~~~~~~~~g~gg~-~----m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~ 102 (394)
||++++. ..|| ..+...++++|.+++.+ +.++....+ . ....|++. ..++..+.... ..+..+.
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~-V~v~~~~~~~~~~~~~~~~~i~v----~~~p~~~~~~~-~~~~~~~ 74 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHK-VVVITHAYGNRVGIRYLTNGLKV----YYLPFVVFYNQ-STLPTFF 74 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCe-eEEEeccCCcCCCcccccCceeE----EEecceeccCC-ccccchh
Confidence 4555555 2445 55678899999988775 776654311 1 11223221 11111111100 0011122
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccC----cchH-HHHHHHhhhh
Q 016179 103 VRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKG----GEAR-LKNLAAFVDH 177 (394)
Q Consensus 103 ~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~----g~~r-~~~l~~~~d~ 177 (394)
..+..+.+.+++++||+|++.+........+..+.+.. ++|+++. .+..|.... ...+ .+...+.+|.
T Consensus 75 ~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~-----~~~~v~t--~h~~~~~~~~~~~~~~~~~~~~~~~~d~ 147 (398)
T cd03796 75 GTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTM-----GLKTVFT--DHSLFGFADASSIHTNKLLRFSLADVDH 147 (398)
T ss_pred hhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhc-----CCcEEEE--ecccccccchhhHHhhHHHHHhhccCCE
Confidence 33445667788899999998763222221222222221 6786433 233221110 0011 2234678999
Q ss_pred eeecCcccHHHH-HhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHH
Q 016179 178 ILCILPNEEAIC-RLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQE 253 (394)
Q Consensus 178 v~~~~p~~~~~~-~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~e 253 (394)
+++.++...+.+ .+.+++ +.++-|.+.... +.+ +... .+++.++|+.. | |..+
T Consensus 148 ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~--f~~-------------~~~~------~~~~~~~i~~~-g-rl~~ 204 (398)
T cd03796 148 VICVSHTSKENTVLRASLDPERVSVIPNAVDSSD--FTP-------------DPSK------RDNDKITIVVI-S-RLVY 204 (398)
T ss_pred EEEecHhHhhHHHHHhCCChhhEEEEcCccCHHH--cCC-------------Cccc------CCCCceEEEEE-e-ccch
Confidence 999998877643 333432 455555443221 111 0000 23455566665 3 3332
Q ss_pred HHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCC-cchHHHHHHHcccceehh---
Q 016179 254 VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSASRVALCTS--- 327 (394)
Q Consensus 254 i~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~-~~~~~~~~~~ADl~I~~S--- 327 (394)
- +.+..++++++.+.++.+++++++++.+. . .+.+++..++++. ++.+. |+. .+++.++|++||++|..|
T Consensus 205 ~-Kg~~~li~a~~~l~~~~~~~~l~i~G~g~-~-~~~l~~~~~~~~l~~~v~~~-G~~~~~~~~~~l~~ad~~v~pS~~E 280 (398)
T cd03796 205 R-KGIDLLVGIIPEICKKHPNVRFIIGGDGP-K-RILLEEMREKYNLQDRVELL-GAVPHERVRDVLVQGHIFLNTSLTE 280 (398)
T ss_pred h-cCHHHHHHHHHHHHhhCCCEEEEEEeCCc-h-HHHHHHHHHHhCCCCeEEEe-CCCCHHHHHHHHHhCCEEEeCChhh
Confidence 2 34667889999888777899999888653 2 3445555555443 46665 432 468999999999999988
Q ss_pred --hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 328 --GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 328 --Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|.+.+|||+||+|+|+ .+.+.....+
T Consensus 281 ~~g~~~~EAma~G~PVI~-s~~gg~~e~i 308 (398)
T cd03796 281 AFCIAIVEAASCGLLVVS-TRVGGIPEVL 308 (398)
T ss_pred ccCHHHHHHHHcCCCEEE-CCCCCchhhe
Confidence 5566699999999876 5555554444
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.47 E-value=9e-12 Score=120.83 Aligned_cols=283 Identities=17% Similarity=0.119 Sum_probs=152.6
Q ss_pred eEEEEeCC----chHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHH
Q 016179 33 RVFIVAGE----VSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKE 107 (394)
Q Consensus 33 kIlI~aG~----~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~ 107 (394)
||++++.. .||+.. ...++++|.+++.+ +.++.......... ..............+. ..+ ........
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~---~~~~~~~~ 74 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHE-VLVIAPGPFRESEG-PARVVPVPSVPLPGYP-EIR---LALPPRRR 74 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCE-EEEEeCCchhhccC-CCCceeecccccCccc-ceE---ecccchhh
Confidence 45555533 256555 77899999987775 77776553321111 0000000011100110 000 01112334
Q ss_pred HHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCcccc-ccC------c----chHHHHHHHhhh
Q 016179 108 TIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWA-WKG------G----EARLKNLAAFVD 176 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa-~~~------g----~~r~~~l~~~~d 176 (394)
+.+.+++.+||+|++.....+... +..+.++. ++|+++++. . .|. +.. . ....+++.+.+|
T Consensus 75 ~~~~~~~~~pdii~~~~~~~~~~~-~~~~~~~~-----~~~~i~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 146 (364)
T cd03814 75 VRRLLDAFAPDVVHIATPGPLGLA-ALRAARRL-----GIPVVTSYH-T-DFPEYLRYYGLGPLSWLAWAYLRWFHNRAD 146 (364)
T ss_pred HHHHHHhcCCCEEEEeccchhhHH-HHHHHHHc-----CCCEEEEEe-c-ChHHHhhhcccchHhHhhHHHHHHHHHhCC
Confidence 566678899999987642222222 22222221 688654442 1 111 000 0 001233567799
Q ss_pred heeecCcccHHHHHhcCCC-eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHH
Q 016179 177 HILCILPNEEAICRLNGLA-ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVA 255 (394)
Q Consensus 177 ~v~~~~p~~~~~~~~~g~~-~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~ 255 (394)
.+++.++...+.+.+.+.+ +.++.+++..... .+ .......+++++ +.+.+++ +..|+... .
T Consensus 147 ~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~-----------~~~~~~~~~~~~-~~~~~~i-~~~G~~~~--~ 209 (364)
T cd03814 147 RVLVPSPSLADELRARGFRRVRLWPRGVDTELF--HP-----------RRRDEALRARLG-PPDRPVL-LYVGRLAP--E 209 (364)
T ss_pred EEEeCCHHHHHHHhccCCCceeecCCCcccccc--Cc-----------ccccHHHHHHhC-CCCCeEE-EEEecccc--c
Confidence 9999999988866655543 5566666533321 11 112233445555 3444444 44554432 2
Q ss_pred hhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehh-----hHH
Q 016179 256 RMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS-----GTV 330 (394)
Q Consensus 256 ~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~ 330 (394)
+....++++++.+.++ +++++++++.+. . .+.++ ....++.+......+++.++|+.||++|..| |.+
T Consensus 210 k~~~~~i~~~~~l~~~-~~~~l~i~G~~~-~-~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~ 282 (364)
T cd03814 210 KNLEALLDADLPLRRR-PPVRLVIVGDGP-A-RARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLV 282 (364)
T ss_pred cCHHHHHHHHHHhhhc-CCceEEEEeCCc-h-HHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcH
Confidence 3467788999998776 789988887643 2 22232 2233576664211468999999999999988 345
Q ss_pred HHHHHHcCCCEEEEEcCChHHHHH
Q 016179 331 AVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 331 tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
.+|++++|+|+|. ++.+.....+
T Consensus 283 ~lEa~a~g~PvI~-~~~~~~~~~i 305 (364)
T cd03814 283 VLEAMASGLPVVA-PDAGGPADIV 305 (364)
T ss_pred HHHHHHcCCCEEE-cCCCCchhhh
Confidence 5699999999875 5555554444
No 44
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.46 E-value=9.1e-12 Score=121.15 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=156.0
Q ss_pred ceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChh----hHhccCccccccCcceeccHHHhhhhHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSM----MSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLK 106 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~----m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~ 106 (394)
|||+|--+-+ -|++ -..++++|.+++.+ +.+..-.... ++.-|++. ..+.-.| ......+........
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~Ghe-V~it~R~~~~~~~LL~~yg~~y----~~iG~~g-~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHE-VLITARDKDETEELLDLYGIDY----IVIGKHG-DSLYGKLLESIERQY 73 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCE-EEEEEeccchHHHHHHHcCCCe----EEEcCCC-CCHHHHHHHHHHHHH
Confidence 6787766554 4777 67899999998764 6555432111 23333321 1111112 122233333445567
Q ss_pred HHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHH-HHhhhheeecCccc
Q 016179 107 ETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNL-AAFVDHILCILPNE 185 (394)
Q Consensus 107 ~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l-~~~~d~v~~~~p~~ 185 (394)
++.+++++++||++++.+++ .+.-++.+. |+|.+..+..+ ++. -.+++ ..++|.+++..-..
T Consensus 74 ~l~~~~~~~~pDv~is~~s~--~a~~va~~l--------giP~I~f~D~e--~a~-----~~~~Lt~Pla~~i~~P~~~~ 136 (335)
T PF04007_consen 74 KLLKLIKKFKPDVAISFGSP--EAARVAFGL--------GIPSIVFNDTE--HAI-----AQNRLTLPLADVIITPEAIP 136 (335)
T ss_pred HHHHHHHhhCCCEEEecCcH--HHHHHHHHh--------CCCeEEEecCc--hhh-----ccceeehhcCCeeECCcccC
Confidence 78889999999999986543 333223332 78964433222 222 12333 66899999777666
Q ss_pred HHHHHhcCCC--eE-EEcCCCchhh---hhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHH-HHhhH
Q 016179 186 EAICRLNGLA--AT-FVGHPVVEDC---LELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQE-VARML 258 (394)
Q Consensus 186 ~~~~~~~g~~--~~-~vG~Pv~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~e-i~~~l 258 (394)
...+.+.|.+ +. |-|. ++. ..|. ..+++.+++|+++ .+.|++=+-+-.|. .+...
T Consensus 137 ~~~~~~~G~~~~i~~y~G~---~E~ayl~~F~--------------Pd~~vl~~lg~~~-~~yIvvR~~~~~A~y~~~~~ 198 (335)
T PF04007_consen 137 KEFLKRFGAKNQIRTYNGY---KELAYLHPFK--------------PDPEVLKELGLDD-EPYIVVRPEAWKASYDNGKK 198 (335)
T ss_pred HHHHHhcCCcCCEEEECCe---eeEEeecCCC--------------CChhHHHHcCCCC-CCEEEEEeccccCeeecCcc
Confidence 6677777766 54 5553 221 1222 2356888999875 57777766565541 11112
Q ss_pred HHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcC
Q 016179 259 PIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLAR 338 (394)
Q Consensus 259 ~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G 338 (394)
+.+-+.++.|.+. .+. +|+..- ..... +..++++ +.+.+. .-+..+++..||++|+-+||++.||+++|
T Consensus 199 ~i~~~ii~~L~~~-~~~-vV~ipr-~~~~~----~~~~~~~--~~i~~~--~vd~~~Ll~~a~l~Ig~ggTMa~EAA~LG 267 (335)
T PF04007_consen 199 SILPEIIEELEKY-GRN-VVIIPR-YEDQR----ELFEKYG--VIIPPE--PVDGLDLLYYADLVIGGGGTMAREAALLG 267 (335)
T ss_pred chHHHHHHHHHhh-Cce-EEEecC-Ccchh----hHHhccC--ccccCC--CCCHHHHHHhcCEEEeCCcHHHHHHHHhC
Confidence 3344556666543 222 333322 12111 2223332 333322 12566899999999999999999999999
Q ss_pred CCEEEEEcCC--hHHHHHHH
Q 016179 339 LPCVVAYRAH--FLTEWFIR 356 (394)
Q Consensus 339 ~P~Iv~y~~~--~~~~~~a~ 356 (394)
+|+|-+|+.. .++.++.+
T Consensus 268 tPaIs~~~g~~~~vd~~L~~ 287 (335)
T PF04007_consen 268 TPAISCFPGKLLAVDKYLIE 287 (335)
T ss_pred CCEEEecCCcchhHHHHHHH
Confidence 9999888753 45555543
No 45
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.46 E-value=2e-11 Score=116.74 Aligned_cols=258 Identities=13% Similarity=0.067 Sum_probs=144.2
Q ss_pred hHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHHHHhcCCCEE
Q 016179 42 SGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAV 120 (394)
Q Consensus 42 sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~i~~~~PD~V 120 (394)
||... +..++++|.+.+.+ +.++......-.............+...+.. ..........++.+++++.+||+|
T Consensus 13 gG~~~~~~~l~~~L~~~g~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~i 87 (348)
T cd03820 13 GGAERVLSNLANALAEKGHE-VTIISLDKGEPPFYELDPKIKVIDLGDKRDS----KLLARFKKLRRLRKLLKNNKPDVV 87 (348)
T ss_pred CChHHHHHHHHHHHHhCCCe-EEEEecCCCCCCccccCCccceeeccccccc----chhccccchHHHHHhhcccCCCEE
Confidence 55544 77899999876664 7776654332000000000011111111100 111122334567778888999999
Q ss_pred EEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcc-hH--HHHHHHhhhheeecCcccHHHH-HhcCCCe
Q 016179 121 VTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGE-AR--LKNLAAFVDHILCILPNEEAIC-RLNGLAA 196 (394)
Q Consensus 121 i~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~-~r--~~~l~~~~d~v~~~~p~~~~~~-~~~g~~~ 196 (394)
++.+.. ...+.+.+... .+|++.+. ....+...... .. .+...+.+|.+++.++..+..+ ...+.++
T Consensus 88 ~~~~~~--~~~~~~~~~~~------~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~ 158 (348)
T cd03820 88 ISFLTS--LLTFLASLGLK------IVKLIVSE-HNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKKFNKNV 158 (348)
T ss_pred EEcCch--HHHHHHHHhhc------cccEEEec-CCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhccCCCCe
Confidence 987533 22222232211 23654332 11111111000 01 2335778999999998885322 2233457
Q ss_pred EEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeE
Q 016179 197 TFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELI 276 (394)
Q Consensus 197 ~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~ 276 (394)
.+++||+...... .. .+.+.++++.+|+ .. . .+....++++++.+.+..++++
T Consensus 159 ~vi~~~~~~~~~~----------------~~--------~~~~~~~i~~~g~-~~-~-~K~~~~l~~~~~~l~~~~~~~~ 211 (348)
T cd03820 159 VVIPNPLPFPPEE----------------PS--------SDLKSKRILAVGR-LV-P-QKGFDLLIEAWAKIAKKHPDWK 211 (348)
T ss_pred EEecCCcChhhcc----------------cc--------CCCCCcEEEEEEe-ec-c-ccCHHHHHHHHHHHHhcCCCeE
Confidence 8888887554321 00 1244566666643 22 2 3346778899999887778999
Q ss_pred EEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEE
Q 016179 277 TVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVA 344 (394)
Q Consensus 277 ~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~ 344 (394)
+++++.+. . .+.+++...+.+. ++.+. ++ .+++.++|+.||++|..| |.+.+|++++|+|+|+.
T Consensus 212 l~i~G~~~-~-~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~ 282 (348)
T cd03820 212 LRIVGDGP-E-REALEALIKELGLEDRVILL-GF-TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISF 282 (348)
T ss_pred EEEEeCCC-C-HHHHHHHHHHcCCCCeEEEc-CC-cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEe
Confidence 88887653 2 3334444444433 35444 43 478999999999999998 66777999999998864
No 46
>PLN02275 transferase, transferring glycosyl groups
Probab=99.45 E-value=6e-11 Score=117.90 Aligned_cols=206 Identities=10% Similarity=0.037 Sum_probs=117.0
Q ss_pred HHhcCCCEEEEeCCCCchHHHHHH-HHHhccccCCCCCeEEEeecCccccc-------cCc-c----hHHH-HHHHhhhh
Q 016179 112 ALLFRPHAVVTVDSKGFSFRLLKQ-LRARYSHERLNGPAHFHYVAPSFWAW-------KGG-E----ARLK-NLAAFVDH 177 (394)
Q Consensus 112 i~~~~PD~Vi~~~~~~f~~~la~~-l~~~~~~~~~~ip~~~~yv~~~~wa~-------~~g-~----~r~~-~l~~~~d~ 177 (394)
++.++||+|+++..+.+...+++. +++.. +.|+++.+ |..|.. ... . .+.+ .+.+.+|.
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~-----~~p~v~~~--h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ 168 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWLR-----RAKFVIDW--HNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADG 168 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHHh-----CCCEEEEc--CCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCE
Confidence 356899999876433333333333 22221 56864432 333311 000 0 0111 24778999
Q ss_pred eeecCcccHHHHHh-cCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHh
Q 016179 178 ILCILPNEEAICRL-NGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVAR 256 (394)
Q Consensus 178 v~~~~p~~~~~~~~-~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~ 256 (394)
+++.++..++.+.+ .|+++.++=|...+.+. + .... . .+.++.+.+++..|.-+ +. +
T Consensus 169 ii~~S~~~~~~l~~~~g~~i~vi~n~~~~~f~---~------------~~~~---~--~~~~~~~~~i~~~grl~-~~-k 226 (371)
T PLN02275 169 HLCVTKAMQHELDQNWGIRATVLYDQPPEFFR---P------------ASLE---I--RLRPNRPALVVSSTSWT-PD-E 226 (371)
T ss_pred EEECCHHHHHHHHHhcCCCeEEECCCCHHHcC---c------------CCch---h--cccCCCcEEEEEeCcee-cc-C
Confidence 99999999888765 47775555444323221 1 1111 1 12223344444444433 22 2
Q ss_pred hHHHHHHHHHHhh-----------------hhCCCeEEEEEeCCCcChHHHHHHHhhcCCC-CEEEecCCC-cchHHHHH
Q 016179 257 MLPIFAKTVELLK-----------------DSFPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGS-SNLKYDAF 317 (394)
Q Consensus 257 ~l~~ll~a~~~l~-----------------~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~-~v~~~~g~~-~~~~~~~~ 317 (394)
.++.+++++..+. +..|++++++++++. . ++.+++..++.+. ++.++.++. .++++++|
T Consensus 227 ~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~-~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l 304 (371)
T PLN02275 227 DFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGP-Q-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLL 304 (371)
T ss_pred CHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCC-C-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHH
Confidence 3566778877663 235789999988764 3 3456666665554 355554432 57899999
Q ss_pred HHcccceeh--h------hHHHHHHHHcCCCEEEEEcCCh
Q 016179 318 SASRVALCT--S------GTVAVELQLARLPCVVAYRAHF 349 (394)
Q Consensus 318 ~~ADl~I~~--S------Gt~tlEa~a~G~P~Iv~y~~~~ 349 (394)
++||+.|.. | |...+|+|+||+|+|. ...+.
T Consensus 305 ~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa-~~~gg 343 (371)
T PLN02275 305 GSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-VSYSC 343 (371)
T ss_pred HhCCEEEEeccccccccccHHHHHHHHCCCCEEE-ecCCC
Confidence 999999853 1 3455699999999886 44444
No 47
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.45 E-value=2.6e-11 Score=118.98 Aligned_cols=252 Identities=14% Similarity=0.031 Sum_probs=143.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcc---------hHHHHHHHhhh
Q 016179 106 KETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGE---------ARLKNLAAFVD 176 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~---------~r~~~l~~~~d 176 (394)
.+..+++++++||+|++.+. +....+..+.++. ++|+++++.....+.+.... ...+.+.+.+|
T Consensus 72 ~~~~~~~~~~~~dvvh~~~~--~~~~~~~~~~~~~-----~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 144 (367)
T cd05844 72 PQLRRLLRRHRPDLVHAHFG--FDGVYALPLARRL-----GVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAA 144 (367)
T ss_pred cHHHHHHHhhCCCEEEeccC--chHHHHHHHHHHc-----CCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcC
Confidence 34555788999999998642 2333333332221 78976544321111111100 01123467899
Q ss_pred heeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHH
Q 016179 177 HILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQE 253 (394)
Q Consensus 177 ~v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~e 253 (394)
.+++.++..++.+.+.|++ +.++.|++..+.. .+ . .-+.+.++++.+ |+...
T Consensus 145 ~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~--~~------------~---------~~~~~~~~i~~~-G~~~~- 199 (367)
T cd05844 145 LFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKF--TP------------A---------TPARRPPRILFV-GRFVE- 199 (367)
T ss_pred EEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHhc--CC------------C---------CCCCCCcEEEEE-Eeecc-
Confidence 9999999999988877764 5566665533211 10 0 011234455554 55442
Q ss_pred HHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEEEecCCCcchHHHHHHHcccceehh----
Q 016179 254 VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGSSNLKYDAFSASRVALCTS---- 327 (394)
Q Consensus 254 i~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~ADl~I~~S---- 327 (394)
.+....+++++..+.++.+++++++++.+. ..+.++...++.+ .++.+......+++.++|+.||++|..|
T Consensus 200 -~K~~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~ 276 (367)
T cd05844 200 -KKGPLLLLEAFARLARRVPEVRLVIIGDGP--LLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAP 276 (367)
T ss_pred -ccChHHHHHHHHHHHHhCCCeEEEEEeCch--HHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCC
Confidence 344677889999988777889988887642 2344555555533 3466553211367999999999999876
Q ss_pred -------hHHHHHHHHcCCCEEEEEcCChHHHHHHH----hhccC-Cccc----hhhhhcCCCCc-------ccccCCCC
Q 016179 328 -------GTVAVELQLARLPCVVAYRAHFLTEWFIR----YKAKI-PYIS----LPNILLDSPII-------PEALLQAC 384 (394)
Q Consensus 328 -------Gt~tlEa~a~G~P~Iv~y~~~~~~~~~a~----~~vk~-~~~~----l~Nil~~~~i~-------pEliq~~~ 384 (394)
|...+||+++|+|+|. .+.+.....+.. .++.. ..-. +-+++.+++.. .+.+++.+
T Consensus 277 ~~~~E~~~~~~~EA~a~G~PvI~-s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~ 355 (367)
T cd05844 277 SGDAEGLPVVLLEAQASGVPVVA-TRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERF 355 (367)
T ss_pred CCCccCCchHHHHHHHcCCCEEE-eCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHC
Confidence 4555699999999886 455544444321 12211 1111 22344443322 33455677
Q ss_pred CHHHHHHHh
Q 016179 385 TPDTLTHLL 393 (394)
Q Consensus 385 ~~~~i~~~~ 393 (394)
++++.++.+
T Consensus 356 s~~~~~~~l 364 (367)
T cd05844 356 DLRRQTAKL 364 (367)
T ss_pred CHHHHHHHH
Confidence 888877765
No 48
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.44 E-value=4.9e-11 Score=122.12 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=84.4
Q ss_pred hHHHHhhcCCCC-CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEe
Q 016179 227 SEDFKNKYSVPS-GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILV 305 (394)
Q Consensus 227 ~~~~r~~lgl~~-~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~ 305 (394)
+.++++++|+++ +.++|+.+ +|-.+-| .+..++++++.+.+. ++++++++++...+++.++++.++++.++.++
T Consensus 268 k~~l~~~~gl~~~~~~~i~~v--GRl~~~K-G~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~ 342 (466)
T PRK00654 268 KRALQERFGLPDDDAPLFAMV--SRLTEQK-GLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQ 342 (466)
T ss_pred HHHHHHHhCCCCCCCcEEEEe--ecccccc-ChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEE
Confidence 456788999985 56777666 3444333 467888999988653 78999888764334455666666665566655
Q ss_pred cCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHH
Q 016179 306 PGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTE 352 (394)
Q Consensus 306 ~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~ 352 (394)
.++..+..+.+|++||++|..| |.+.+||+++|+|+|+ ..++.+..
T Consensus 343 ~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-~~~gG~~e 393 (466)
T PRK00654 343 IGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV-RRTGGLAD 393 (466)
T ss_pred EeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE-eCCCCccc
Confidence 5652233678999999999998 7777899999999886 55554443
No 49
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.44 E-value=2.6e-11 Score=120.89 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=126.5
Q ss_pred hcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHHhcC
Q 016179 114 LFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNG 193 (394)
Q Consensus 114 ~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~~~g 193 (394)
..++|+|++.+.+ .+...++++. ++.|++++. |..| .+ .+.+.++++++.+++.++.+.+..
T Consensus 97 ~~~~~vi~v~~~~----~~~~~~~~~~----~~~~~v~~~--h~~~--~~------~~~~~~~~ii~~S~~~~~~~~~~~ 158 (380)
T PRK15484 97 ITKDSVIVIHNSM----KLYRQIRERA----PQAKLVMHM--HNAF--EP------ELLDKNAKIIVPSQFLKKFYEERL 158 (380)
T ss_pred CCCCcEEEEeCcH----HhHHHHHhhC----CCCCEEEEE--eccc--Ch------hHhccCCEEEEcCHHHHHHHHhhC
Confidence 3568877765432 2333333332 256765543 2222 21 122347899999999998887643
Q ss_pred --CCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhh
Q 016179 194 --LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS 271 (394)
Q Consensus 194 --~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~ 271 (394)
.++.++.|++..... . +..+...+++++++++.++|+.. |... ..+ .+..++++++.+.++
T Consensus 159 ~~~~i~vIpngvd~~~~--~------------~~~~~~~~~~~~~~~~~~~il~~-Grl~-~~K-g~~~Li~A~~~l~~~ 221 (380)
T PRK15484 159 PNADISIVPNGFCLETY--Q------------SNPQPNLRQQLNISPDETVLLYA-GRIS-PDK-GILLLMQAFEKLATA 221 (380)
T ss_pred CCCCEEEecCCCCHHHc--C------------CcchHHHHHHhCCCCCCeEEEEe-ccCc-ccc-CHHHHHHHHHHHHHh
Confidence 246677777643321 1 12234567788988777666554 4433 333 467788999999888
Q ss_pred CCCeEEEEEeCCCc-------ChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehh------hHHHHHHHHcC
Q 016179 272 FPELITVIHVAPNR-------HVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS------GTVAVELQLAR 338 (394)
Q Consensus 272 ~~~~~~vi~~g~~~-------~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S------Gt~tlEa~a~G 338 (394)
.|++++++++++.. .+.+.+++...+.+.++.++.....+++.++|++||++|..| |.+.+|||++|
T Consensus 222 ~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G 301 (380)
T PRK15484 222 HSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG 301 (380)
T ss_pred CCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcC
Confidence 89999999886532 122234444444455676653221468999999999999988 34556999999
Q ss_pred CCEEEEEcCChHHHHH
Q 016179 339 LPCVVAYRAHFLTEWF 354 (394)
Q Consensus 339 ~P~Iv~y~~~~~~~~~ 354 (394)
+|+|. .+.+.....+
T Consensus 302 ~PVI~-s~~gg~~Eiv 316 (380)
T PRK15484 302 KPVLA-STKGGITEFV 316 (380)
T ss_pred CCEEE-eCCCCcHhhc
Confidence 99886 4555555444
No 50
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.44 E-value=1.7e-12 Score=127.64 Aligned_cols=222 Identities=14% Similarity=0.076 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecC-c--cccccCcchHHHH-HHHhhh
Q 016179 101 FRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAP-S--FWAWKGGEARLKN-LAAFVD 176 (394)
Q Consensus 101 ~~~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~-~--~wa~~~g~~r~~~-l~~~~d 176 (394)
+-..+..+-+.+.+++||+|++.| +-.-.+|..+...+. +|| +.|.... . .+....-+...+. +.+.+|
T Consensus 52 ~~~~~~~~~~~~~~~~Pd~Vlv~G--D~~~~la~alaA~~~----~ip-v~HieaGlRs~d~~~g~~de~~R~~i~~la~ 124 (346)
T PF02350_consen 52 TGLAIIELADVLEREKPDAVLVLG--DRNEALAAALAAFYL----NIP-VAHIEAGLRSGDRTEGMPDEINRHAIDKLAH 124 (346)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEET--TSHHHHHHHHHHHHT----T-E-EEEES-----S-TTSSTTHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEc--CCchHHHHHHHHHHh----CCC-EEEecCCCCccccCCCCchhhhhhhhhhhhh
Confidence 334556677888899999999886 333333333333322 799 5785332 0 1110000123333 588999
Q ss_pred heeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHH-HhhcCCCCCCcEEEEECCCcHH
Q 016179 177 HILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDF-KNKYSVPSGATVISLLPGSRLQ 252 (394)
Q Consensus 177 ~v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~lgl~~~~~~IlllgGSrg~ 252 (394)
..|+..+..++.+.+.|++ +.+||+|..|.+....+ ...+.. ...+.-+..++.++++- .|..
T Consensus 125 lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~------------~~~~~~~~~~i~~~~~~~~iLvt~-H~~t 191 (346)
T PF02350_consen 125 LHFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKE------------EIEEKYKNSGILQDAPKPYILVTL-HPVT 191 (346)
T ss_dssp EEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHH------------TTCC-HHHHHHHHCTTSEEEEEE--S-CC
T ss_pred hhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHH------------HHhhhhhhHHHHhccCCCEEEEEe-Ccch
Confidence 9999999999999999984 88999999998753211 111111 11110024556666653 3332
Q ss_pred -HH-HhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHH
Q 016179 253 -EV-ARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTV 330 (394)
Q Consensus 253 -ei-~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~ 330 (394)
.- ...+..+.++++.|.+. ++++++++..+++.....+.+.+.++ .+++++......+...+|+.||++|+-||+.
T Consensus 192 ~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll~~a~~vvgdSsGI 269 (346)
T PF02350_consen 192 NEDNPERLEQILEALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLLKNADLVVGDSSGI 269 (346)
T ss_dssp CCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHHHHESEEEESSHHH
T ss_pred hcCChHHHHHHHHHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHHhcceEEEEcCccH
Confidence 11 12244677777888776 78999999986655555565555555 3777775333568899999999999999966
Q ss_pred HHHHHHcCCCEEEE
Q 016179 331 AVELQLARLPCVVA 344 (394)
Q Consensus 331 tlEa~a~G~P~Iv~ 344 (394)
..||+.+|+|+|.+
T Consensus 270 ~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 270 QEEAPSLGKPVVNI 283 (346)
T ss_dssp HHHGGGGT--EEEC
T ss_pred HHHHHHhCCeEEEe
Confidence 66999999999987
No 51
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.43 E-value=4.6e-11 Score=119.55 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=110.1
Q ss_pred HHHhhhheeecCcccHHHHH-hcCC---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEE
Q 016179 171 LAAFVDHILCILPNEEAICR-LNGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 246 (394)
Q Consensus 171 l~~~~d~v~~~~p~~~~~~~-~~g~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Illl 246 (394)
+.+.+|.+++.++...+.+. .+|. ++.++.|++..... . +.++...+++++++++.++|+.+
T Consensus 160 ~~~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~--~------------~~~~~~~~~~~~~~~~~~~i~~~ 225 (405)
T TIGR03449 160 LVDNADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERF--R------------PGDRATERARLGLPLDTKVVAFV 225 (405)
T ss_pred HHHhcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHc--C------------CCcHHHHHHhcCCCCCCcEEEEe
Confidence 56789999999998777654 3454 35677777754322 1 12345677889998877777665
Q ss_pred CCCcHHHHHhhHHHHHHHHHHhhhhCCC--eEEEEEeCCCc---ChHHHHHHHhhcCCC--CEEEecCCC-cchHHHHHH
Q 016179 247 PGSRLQEVARMLPIFAKTVELLKDSFPE--LITVIHVAPNR---HVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFS 318 (394)
Q Consensus 247 gGSrg~ei~~~l~~ll~a~~~l~~~~~~--~~~vi~~g~~~---~~~~~l~~~~~~~~~--~v~~~~g~~-~~~~~~~~~ 318 (394)
|.-. .. +.+..++++++.+.++.|+ +++++++++.. ...+.+++..++.+. ++.+. |+. .+++.++|+
T Consensus 226 -G~l~-~~-K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~~~~~~l~ 301 (405)
T TIGR03449 226 -GRIQ-PL-KAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFL-PPRPPEELVHVYR 301 (405)
T ss_pred -cCCC-cc-cCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEEC-CCCCHHHHHHHHH
Confidence 3332 22 3467788999988776666 88888886321 123345555554443 46655 432 468899999
Q ss_pred Hcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 319 ASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 319 ~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
.||+++..| |.+.+||+++|+|+|. .+.+.....+
T Consensus 302 ~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~-~~~~~~~e~i 341 (405)
T TIGR03449 302 AADVVAVPSYNESFGLVAMEAQACGTPVVA-ARVGGLPVAV 341 (405)
T ss_pred hCCEEEECCCCCCcChHHHHHHHcCCCEEE-ecCCCcHhhh
Confidence 999999877 6677799999999886 5555544443
No 52
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.42 E-value=2.1e-10 Score=110.60 Aligned_cols=285 Identities=13% Similarity=0.061 Sum_probs=155.8
Q ss_pred hHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCcccc----ccCcceeccHHHhhhhHHHHHHHHHHHHHHHH--h
Q 016179 42 SGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLF----PMEDIAVMGIWELLPHIYKFRVRLKETIEAAL--L 114 (394)
Q Consensus 42 sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~----~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~i~--~ 114 (394)
+|+-. ...+++.|.+.+.+ +.++................ ...... ...................+.+.++ .
T Consensus 14 ~g~~~~~~~~~~~l~~~g~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (377)
T cd03798 14 GGGGIFVKELARALAKRGVE-VTVLAPGPWGPKLLDLLKGRLVGVERLPVL-LPVVPLLKGPLLYLLAARALLKLLKLKR 91 (377)
T ss_pred chHHHHHHHHHHHHHHCCCc-eEEEecCCCCCCchhhcccccccccccccC-cchhhccccchhHHHHHHHHHHHHhccc
Confidence 44444 78899999977664 76665542211110000000 000000 0000111111223334455677777 8
Q ss_pred cCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCc---chHHHHHHHhhhheeecCcccHHHHHh
Q 016179 115 FRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGG---EARLKNLAAFVDHILCILPNEEAICRL 191 (394)
Q Consensus 115 ~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g---~~r~~~l~~~~d~v~~~~p~~~~~~~~ 191 (394)
.+||+|++.. +.....++..+.+.. ++|++++......+..... ....+.+.+.+|.+++.++..++.+.+
T Consensus 92 ~~~dii~~~~-~~~~~~~~~~~~~~~-----~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 165 (377)
T cd03798 92 FRPDLIHAHF-AYPDGFAAALLKRKL-----GIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKA 165 (377)
T ss_pred CCCCEEEEec-cchHHHHHHHHHHhc-----CCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHHHHH
Confidence 8999998863 222223333333221 5786554422221111110 011233577899999999999998876
Q ss_pred c---CCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHh
Q 016179 192 N---GLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELL 268 (394)
Q Consensus 192 ~---g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l 268 (394)
. +.++.++++++...... + ...... .+++.+.+.++++.+| +... .+.+..++++++.+
T Consensus 166 ~~~~~~~~~~i~~~~~~~~~~--~------------~~~~~~-~~~~~~~~~~~i~~~g-~~~~--~k~~~~li~~~~~~ 227 (377)
T cd03798 166 LGIDPEKVTVIPNGVDTERFS--P------------ADRAEA-RKLGLPEDKKVILFVG-RLVP--RKGIDYLIEALARL 227 (377)
T ss_pred hcCCCCceEEcCCCcCcccCC--C------------cchHHH-HhccCCCCceEEEEec-cCcc--ccCHHHHHHHHHHH
Confidence 4 34577888877544321 0 111111 3345555666666654 3332 33456788899888
Q ss_pred hhhCCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEEEecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCE
Q 016179 269 KDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPC 341 (394)
Q Consensus 269 ~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~ 341 (394)
.++.+++++++.+.+. . .+.+++..++.+ .++.+......+++.++|+.||++|..| |+..+|++++|+|+
T Consensus 228 ~~~~~~~~l~i~g~~~-~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pv 305 (377)
T cd03798 228 LKKRPDVHLVIVGDGP-L-REALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPV 305 (377)
T ss_pred HhcCCCeEEEEEcCCc-c-hHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCE
Confidence 7767789988776543 2 233444444332 2466553221357899999999999877 45666999999998
Q ss_pred EEEEcCChHHHHHH
Q 016179 342 VVAYRAHFLTEWFI 355 (394)
Q Consensus 342 Iv~y~~~~~~~~~a 355 (394)
|+ .+.+.....+.
T Consensus 306 I~-~~~~~~~~~~~ 318 (377)
T cd03798 306 VA-TDVGGIPEIIT 318 (377)
T ss_pred EE-ecCCChHHHhc
Confidence 75 56666555553
No 53
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.41 E-value=1e-10 Score=119.83 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=82.7
Q ss_pred hHHHHhhcCCC--CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEE
Q 016179 227 SEDFKNKYSVP--SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSIL 304 (394)
Q Consensus 227 ~~~~r~~lgl~--~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~ 304 (394)
+..+++++|++ ++.++|+.+| |-.+.| .+..++++++.+.+. ++++++++.+...+++.+++...+...++.+
T Consensus 281 k~~l~~~~g~~~~~~~~~i~~vG--rl~~~K-g~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~ 355 (476)
T cd03791 281 KAALQEELGLPVDPDAPLFGFVG--RLTEQK-GIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAV 355 (476)
T ss_pred HHHHHHHcCCCcCCCCCEEEEEe--eccccc-cHHHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEE
Confidence 45678899985 6777777763 443334 467888999888753 4899888876444445555554444346766
Q ss_pred ecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHH
Q 016179 305 VPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 305 ~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
+.++..+.+..++++||+++..| |.+.+||+++|+|+|+ .+.+.+.
T Consensus 356 ~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-~~~gg~~ 406 (476)
T cd03791 356 LIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIV-RATGGLA 406 (476)
T ss_pred EEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEE-CcCCCcc
Confidence 66654345678999999999987 6677799999999885 4555443
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=2.3e-10 Score=121.37 Aligned_cols=299 Identities=11% Similarity=0.040 Sum_probs=163.2
Q ss_pred ccccCCCceEEEEeCC--chH-HHHHHHHHHHHHhcCC--C---------CeEEEEe-----cCh-----hhHhccCccc
Q 016179 25 GAIKDGELRVFIVAGE--VSG-DSIGSRLMSAMKKLAP--L---------PVSFSGV-----GGS-----MMSEQGMKSL 80 (394)
Q Consensus 25 ~~~~~~~~kIlI~aG~--~sG-h~~a~~l~~~L~~~~~--~---------~~~~~g~-----gg~-----~m~~~g~~~~ 80 (394)
.+|...--||+++.++ .|| ..+...++..+.+... . +++++.. .|. .+++.|++..
T Consensus 275 ~~~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~ 354 (694)
T PRK15179 275 AGPESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVS 354 (694)
T ss_pred CCCCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEE
Confidence 3444333377665444 455 6678899999988631 0 1344432 222 4667887643
Q ss_pred -cccCcce----eccHHHhhh----hHH-HHHHHHHHHHHHHHhcCCCEEEEeCCCC-chHHHHHHHHHhccccCCCCCe
Q 016179 81 -FPMEDIA----VMGIWELLP----HIY-KFRVRLKETIEAALLFRPHAVVTVDSKG-FSFRLLKQLRARYSHERLNGPA 149 (394)
Q Consensus 81 -~~~~~l~----~~G~~~~l~----~~~-~~~~~~~~~~~~i~~~~PD~Vi~~~~~~-f~~~la~~l~~~~~~~~~~ip~ 149 (394)
+....-. ..+....++ .++ .....+.++.+++++++||+|++.++.. +-..++++ . .++|+
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~---~-----~gvPv 426 (694)
T PRK15179 355 VYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAAL---L-----AGVPR 426 (694)
T ss_pred EeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH---H-----cCCCE
Confidence 2221100 001111111 111 2455677889999999999999875421 11223322 2 16786
Q ss_pred EEEeecCccccccCcchHHH----HH---HHhhh--heeecCcccHHHHH-hcCCC---eEEEcCCCchhhhhhcCCCCC
Q 016179 150 HFHYVAPSFWAWKGGEARLK----NL---AAFVD--HILCILPNEEAICR-LNGLA---ATFVGHPVVEDCLELNLGKGP 216 (394)
Q Consensus 150 ~~~yv~~~~wa~~~g~~r~~----~l---~~~~d--~v~~~~p~~~~~~~-~~g~~---~~~vG~Pv~~~~~~~~~~~~~ 216 (394)
+++. .+..+.+.. ..+.. .+ ...++ .+++.+...++.+. ..|++ +.++.|++.... +.+
T Consensus 427 Iv~t-~h~~~~~~~-~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~--f~~---- 498 (694)
T PRK15179 427 IVLS-VRTMPPVDR-PDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLK--SVQ---- 498 (694)
T ss_pred EEEE-eCCCccccc-hhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHh--cCC----
Confidence 4322 222211100 00111 11 11233 33344455555554 35664 667777764322 111
Q ss_pred CCcccccCCChHHHHh--hcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHH
Q 016179 217 EPCELKMEGNSEDFKN--KYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGL 294 (394)
Q Consensus 217 ~~~~~~~~~~~~~~r~--~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~ 294 (394)
.+.++ ..+. +...+++.++|+.+ +|-.+.|. ...+++++..+.++.|++++++++++. .++.++++
T Consensus 499 ------~~~~~-~~~~~~~~~~~~~~~vIg~V--GRL~~~KG-~~~LI~A~a~l~~~~p~~~LvIvG~G~--~~~~L~~l 566 (694)
T PRK15179 499 ------DDACT-AMMAQFDARTSDARFTVGTV--MRVDDNKR-PFLWVEAAQRFAASHPKVRFIMVGGGP--LLESVREF 566 (694)
T ss_pred ------Cchhh-HHHHhhccccCCCCeEEEEE--EeCCccCC-HHHHHHHHHHHHHHCcCeEEEEEccCc--chHHHHHH
Confidence 00111 1111 22334455667666 35444443 677899999888778899999998763 23456666
Q ss_pred hhcCCC--CEEEecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 295 IQKWPV--PSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 295 ~~~~~~--~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
.++.++ ++.+. |+ .+++..+|++||++|..| |.+.+|||++|+|+|. ++.+.....+
T Consensus 567 ~~~lgL~~~V~fl-G~-~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVa-t~~gG~~EiV 630 (694)
T PRK15179 567 AQRLGMGERILFT-GL-SRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVT-TLAGGAGEAV 630 (694)
T ss_pred HHHcCCCCcEEEc-CC-cchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEE-ECCCChHHHc
Confidence 665543 46554 55 589999999999999987 5566799999999886 5656555554
No 55
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.40 E-value=1.7e-10 Score=111.71 Aligned_cols=219 Identities=15% Similarity=0.113 Sum_probs=124.9
Q ss_pred HHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCcc--ccccCc--chHH------HHHHHhhhheee
Q 016179 111 AALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSF--WAWKGG--EARL------KNLAAFVDHILC 180 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~--wa~~~g--~~r~------~~l~~~~d~v~~ 180 (394)
.....+||+|++.+...+....+..+.++. ++|++++. .... |.+... .... +.+.+.+|.+++
T Consensus 82 ~~~~~~~dii~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (375)
T cd03821 82 RLNIREADIVHVHGLWSYPSLAAARAARKY-----GIPYVVSP-HGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHA 155 (375)
T ss_pred HHhCCCCCEEEEecccchHHHHHHHHHHHh-----CCCEEEEc-cccccccccccchhhhHHHHHHHHHHHHhcCCEEEE
Confidence 344568999998764333333333333221 67864432 2111 210000 0001 123455777777
Q ss_pred cCcccHHHHHhcC--CCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhH
Q 016179 181 ILPNEEAICRLNG--LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARML 258 (394)
Q Consensus 181 ~~p~~~~~~~~~g--~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l 258 (394)
............+ .++.++.|++...... . ......++.++.+++.++++.+|+ . .+.+ ..
T Consensus 156 ~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~i~~~G~-~-~~~K-~~ 218 (375)
T cd03821 156 TSEQEAAEIRRLGLKAPIAVIPNGVDIPPFA--A------------LPSRGRRRKFPILPDKRIILFLGR-L-HPKK-GL 218 (375)
T ss_pred CCHHHHHHHHhhCCcccEEEcCCCcChhccC--c------------chhhhhhhhccCCCCCcEEEEEeC-c-chhc-CH
Confidence 7755555444322 3466776665433211 0 111112566777777888877753 2 2233 46
Q ss_pred HHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCC-cchHHHHHHHcccceehh-----hHH
Q 016179 259 PIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSASRVALCTS-----GTV 330 (394)
Q Consensus 259 ~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~-~~~~~~~~~~ADl~I~~S-----Gt~ 330 (394)
..+++++..+.++.+++++++++.........++....+.+. ++.+. |+. .+++.++|+.||++|..| |.+
T Consensus 219 ~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~-g~~~~~~~~~~~~~adv~v~ps~~e~~~~~ 297 (375)
T cd03821 219 DLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFT-GMLYGEDKAAALADADLFVLPSHSENFGIV 297 (375)
T ss_pred HHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEc-CCCChHHHHHHHhhCCEEEeccccCCCCcH
Confidence 778899999987778899988876543333333333233332 46555 432 348999999999999988 556
Q ss_pred HHHHHHcCCCEEEEEcCChHHHHH
Q 016179 331 AVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 331 tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
.+||+++|+|+|+ .+.+.....+
T Consensus 298 ~~Eama~G~PvI~-~~~~~~~~~~ 320 (375)
T cd03821 298 VAEALACGTPVVT-TDKVPWQELI 320 (375)
T ss_pred HHHHHhcCCCEEE-cCCCCHHHHh
Confidence 6699999999886 5555555444
No 56
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.38 E-value=8.5e-11 Score=114.20 Aligned_cols=280 Identities=15% Similarity=0.066 Sum_probs=148.1
Q ss_pred eEEEEeCC---chH-HHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHH
Q 016179 33 RVFIVAGE---VSG-DSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKET 108 (394)
Q Consensus 33 kIlI~aG~---~sG-h~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~ 108 (394)
||+|++.. .|| ..+...++++|.+.+.+ +.++...... ... ... . .. .+....... .......+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~-v~v~~~~~~~-~~~--~~~-~--~~--~~~~~~~~~---~~~~~~~~ 68 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPD-VLVVSVAALY-PSL--LYG-G--EQ--EVVRVIVLD---NPLDYRRA 68 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCe-EEEEEeeccc-Ccc--cCC-C--cc--cceeeeecC---CchhHHHH
Confidence 46665444 344 44478899999988764 6665543221 000 000 0 00 000000000 01112335
Q ss_pred HHHHHhcCCCEEEEeC-CCCchHHHHHHHHHhccccCCCCCeEEEeecC--cc-ccccCcchHHHHHHHhhhheeecC-c
Q 016179 109 IEAALLFRPHAVVTVD-SKGFSFRLLKQLRARYSHERLNGPAHFHYVAP--SF-WAWKGGEARLKNLAAFVDHILCIL-P 183 (394)
Q Consensus 109 ~~~i~~~~PD~Vi~~~-~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~--~~-wa~~~g~~r~~~l~~~~d~v~~~~-p 183 (394)
.+.+++.+||+|++.+ ++.+.......+...... .++|++++.... .. +.+.. .....+.+.+|.+++.+ +
T Consensus 69 ~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~--~~~~~~~~~~d~ii~~s~~ 144 (366)
T cd03822 69 ARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRG--LGIPVVVTLHTVLLHEPRPGDR--ALLRLLLRRADAVIVMSSE 144 (366)
T ss_pred HHHHhhcCCCEEEEeeccccccchhhHHHHHHHhh--cCCCEEEEEecCCccccchhhh--HHHHHHHhcCCEEEEeeHH
Confidence 6677889999999875 222221111122111000 167865443222 11 11111 12344678899999995 4
Q ss_pred ccHHHHHhcC-CCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHH
Q 016179 184 NEEAICRLNG-LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFA 262 (394)
Q Consensus 184 ~~~~~~~~~g-~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll 262 (394)
..++.+.... .++.++.||+...... .... .++...+.+.++|+.+|.-.. - +.+..++
T Consensus 145 ~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~i~~~G~~~~--~-K~~~~ll 204 (366)
T cd03822 145 LLRALLLRAYPEKIAVIPHGVPDPPAE----------------PPES-LKALGGLDGRPVLLTFGLLRP--Y-KGLELLL 204 (366)
T ss_pred HHHHHHhhcCCCcEEEeCCCCcCcccC----------------Cchh-hHhhcCCCCCeEEEEEeeccC--C-CCHHHHH
Confidence 4455554432 4688888888553221 0111 133344556677777643222 2 3456788
Q ss_pred HHHHHhhhhCCCeEEEEEeCCCcChHHHHHH---HhhcCC--CCEEEecCCC-cchHHHHHHHcccceehh-------hH
Q 016179 263 KTVELLKDSFPELITVIHVAPNRHVENYITG---LIQKWP--VPSILVPGGS-SNLKYDAFSASRVALCTS-------GT 329 (394)
Q Consensus 263 ~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~---~~~~~~--~~v~~~~g~~-~~~~~~~~~~ADl~I~~S-------Gt 329 (394)
++++.+.++.+++++++++............ .+.+.+ .++.++.++. .+++.++|+.||+++..| |.
T Consensus 205 ~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~ 284 (366)
T cd03822 205 EALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSG 284 (366)
T ss_pred HHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccch
Confidence 9999988777889988888654332221110 122222 3566665422 468999999999999766 22
Q ss_pred HHHHHHHcCCCEEEEEcCCh
Q 016179 330 VAVELQLARLPCVVAYRAHF 349 (394)
Q Consensus 330 ~tlEa~a~G~P~Iv~y~~~~ 349 (394)
+.+||+++|+|+|. .+.+.
T Consensus 285 ~~~Ea~a~G~PvI~-~~~~~ 303 (366)
T cd03822 285 VLAYAIGFGKPVIS-TPVGH 303 (366)
T ss_pred HHHHHHHcCCCEEe-cCCCC
Confidence 34499999999886 44443
No 57
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.38 E-value=1.2e-10 Score=113.15 Aligned_cols=163 Identities=15% Similarity=0.090 Sum_probs=99.7
Q ss_pred HHHhhhheeecCcccHHHHHhcCC---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEEC
Q 016179 171 LAAFVDHILCILPNEEAICRLNGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 247 (394)
Q Consensus 171 l~~~~d~v~~~~p~~~~~~~~~g~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Illlg 247 (394)
+.+.+|.+++.++...+.+...+. ++.++.|++....... ......+.++..+++..+++ ..
T Consensus 162 ~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~-~~ 226 (394)
T cd03794 162 IYRRADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKP--------------PPADESLRKELGLDDKFVVL-YA 226 (394)
T ss_pred HHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCC--------------ccchhhhhhccCCCCcEEEE-Ee
Confidence 466789999999999888864443 3677788776543211 11111133444444544444 44
Q ss_pred CCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCC-CCEEEecCCCcchHHHHHHHcccceeh
Q 016179 248 GSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP-VPSILVPGGSSNLKYDAFSASRVALCT 326 (394)
Q Consensus 248 GSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~-~~v~~~~g~~~~~~~~~~~~ADl~I~~ 326 (394)
|+... .+.+..+++++..+.+. +++++++++.+ ... +.+.+.....+ .++.++.....+++.++|+.||++|..
T Consensus 227 G~~~~--~k~~~~l~~~~~~l~~~-~~~~l~i~G~~-~~~-~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~ 301 (394)
T cd03794 227 GNIGR--AQGLDTLLEAAALLKDR-PDIRFLIVGDG-PEK-EELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVP 301 (394)
T ss_pred cCccc--ccCHHHHHHHHHHHhhc-CCeEEEEeCCc-ccH-HHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEe
Confidence 55442 33466788899888765 78998877654 322 33443222222 256666422146899999999999987
Q ss_pred hhH---------H-HHHHHHcCCCEEEEEcCChHHHHH
Q 016179 327 SGT---------V-AVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 327 SGt---------~-tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|.. . .+||+++|+|+|. .+.+.....+
T Consensus 302 ~~~~~~~~~~~p~~~~Ea~~~G~pvi~-~~~~~~~~~~ 338 (394)
T cd03794 302 LKPGPAFEGVSPSKLFEYMAAGKPVLA-SVDGESAELV 338 (394)
T ss_pred ccCcccccccCchHHHHHHHCCCcEEE-ecCCCchhhh
Confidence 632 1 3599999999886 4544444443
No 58
>PRK14099 glycogen synthase; Provisional
Probab=99.38 E-value=2.8e-10 Score=117.03 Aligned_cols=172 Identities=15% Similarity=0.085 Sum_probs=103.7
Q ss_pred HHHHhhhheeecCcccHHHHHhc--C-----------CCeEEEcCCCchhhhhhcCCCCCC-Ccc-----c-ccCCChHH
Q 016179 170 NLAAFVDHILCILPNEEAICRLN--G-----------LAATFVGHPVVEDCLELNLGKGPE-PCE-----L-KMEGNSED 229 (394)
Q Consensus 170 ~l~~~~d~v~~~~p~~~~~~~~~--g-----------~~~~~vG~Pv~~~~~~~~~~~~~~-~~~-----~-~~~~~~~~ 229 (394)
...+.+|.+++.+|..++.+... | -++.++-|-+.... +.+..+.. ..+ + .....+..
T Consensus 205 ~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~--f~p~~~~~~~~~~~~~~~~~k~~~k~~ 282 (485)
T PRK14099 205 AGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAV--WNPATDELIAATYDVETLAARAANKAA 282 (485)
T ss_pred HHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhh--ccccccchhhhcCChhHHHhHHHhHHH
Confidence 34678999999999987776431 1 12333333332221 11100000 000 0 00012456
Q ss_pred HHhhcCCCC--CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecC
Q 016179 230 FKNKYSVPS--GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPG 307 (394)
Q Consensus 230 ~r~~lgl~~--~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g 307 (394)
+++++|++. +.++++.+ ||-.+.| .+..++++++.+.+ .++++++++++...+++.++++..+++.++.++.|
T Consensus 283 l~~~~gl~~~~~~~li~~V--gRL~~~K-G~d~Li~A~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G 357 (485)
T PRK14099 283 LQARFGLDPDPDALLLGVI--SRLSWQK-GLDLLLEALPTLLG--EGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIG 357 (485)
T ss_pred HHHHcCCCcccCCcEEEEE--ecCCccc-cHHHHHHHHHHHHh--cCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeC
Confidence 788999975 45666555 3443333 46788899988864 36899888876433455566555554445544456
Q ss_pred CCcchHHHHH-HHcccceehh-----hHHHHHHHHcCCCEEEEEcCChH
Q 016179 308 GSSNLKYDAF-SASRVALCTS-----GTVAVELQLARLPCVVAYRAHFL 350 (394)
Q Consensus 308 ~~~~~~~~~~-~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~ 350 (394)
+ .+++..+| ++||++|..| |.+.+|||+||+|.|+ ..++.+
T Consensus 358 ~-~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl 404 (485)
T PRK14099 358 Y-DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGL 404 (485)
T ss_pred C-CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCc
Confidence 6 57888877 5699999998 7777899999988776 454443
No 59
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.37 E-value=5.5e-11 Score=119.00 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=70.2
Q ss_pred CCCCcEEEEECCCcHHH-HHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHH
Q 016179 237 PSGATVISLLPGSRLQE-VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYD 315 (394)
Q Consensus 237 ~~~~~~IlllgGSrg~e-i~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~ 315 (394)
++++++|++..||.+.. .+.....+++++..+ +.++++.+|.+... . .....++.+... . ++.+
T Consensus 236 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~-----~~~~i~~~g~~~~~-~------~~~~~~v~~~~~-~--p~~~ 300 (401)
T cd03784 236 AAGRPPVYVGFGSMVVRDPEALARLDVEAVATL-----GQRAILSLGWGGLG-A------EDLPDNVRVVDF-V--PHDW 300 (401)
T ss_pred hCCCCcEEEeCCCCcccCHHHHHHHHHHHHHHc-----CCeEEEEccCcccc-c------cCCCCceEEeCC-C--CHHH
Confidence 35678999999998742 233344455554432 56788888764321 1 112335766643 2 5788
Q ss_pred HHHHcccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhcc
Q 016179 316 AFSASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAK 360 (394)
Q Consensus 316 ~~~~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~vk 360 (394)
+|..||++|+..|..|+ |++++|+|+|++ +...--...++++.+
T Consensus 301 ll~~~d~~I~hgG~~t~~eal~~GvP~v~~-P~~~dQ~~~a~~~~~ 345 (401)
T cd03784 301 LLPRCAAVVHHGGAGTTAAALRAGVPQLVV-PFFGDQPFWAARVAE 345 (401)
T ss_pred HhhhhheeeecCCchhHHHHHHcCCCEEee-CCCCCcHHHHHHHHH
Confidence 99999999999998776 999999999986 333223334666653
No 60
>PLN02316 synthase/transferase
Probab=99.36 E-value=5.4e-10 Score=121.61 Aligned_cols=224 Identities=11% Similarity=0.088 Sum_probs=128.1
Q ss_pred hcCCCEEEEeCCCCchHHHHHHHHHhcc-ccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHHhc
Q 016179 114 LFRPHAVVTVDSKGFSFRLLKQLRARYS-HERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLN 192 (394)
Q Consensus 114 ~~~PD~Vi~~~~~~f~~~la~~l~~~~~-~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~~~ 192 (394)
.++||+|++.|.+ +..++..++..+. ....++|+++ ..|.. .+.. ........++|++++.+|..++.+...
T Consensus 707 ~~~PDIIHaHDW~--talva~llk~~~~~~~~~~~p~V~--TiHnl-~~~~--n~lk~~l~~AD~ViTVS~tya~EI~~~ 779 (1036)
T PLN02316 707 GFHPDIIHCHDWS--SAPVAWLFKDHYAHYGLSKARVVF--TIHNL-EFGA--NHIGKAMAYADKATTVSPTYSREVSGN 779 (1036)
T ss_pred CCCCCEEEECCCh--HHHHHHHHHHhhhhhccCCCCEEE--EeCCc-ccch--hHHHHHHHHCCEEEeCCHHHHHHHHhc
Confidence 3689999987743 3333334443221 0012567532 22321 1211 133445678999999999987766443
Q ss_pred C-C-----CeEEEcCCCchhhhhhcCCCCC-CCccc-------ccCCChHHHHhhcCCCC-CCcEEEEECCCcHHHHHhh
Q 016179 193 G-L-----AATFVGHPVVEDCLELNLGKGP-EPCEL-------KMEGNSEDFKNKYSVPS-GATVISLLPGSRLQEVARM 257 (394)
Q Consensus 193 g-~-----~~~~vG~Pv~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~r~~lgl~~-~~~~IlllgGSrg~ei~~~ 257 (394)
+ + ++..+-|-+.... +.+..|. .+.++ .....+..+++++|++. +.|+|+++ ||-.+-|.
T Consensus 780 ~~l~~~~~Kl~vI~NGID~~~--w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~V--GRL~~qKG- 854 (1036)
T PLN02316 780 SAIAPHLYKFHGILNGIDPDI--WDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGII--TRLTHQKG- 854 (1036)
T ss_pred cCcccccCCEEEEECCccccc--cCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEE--eccccccC-
Confidence 2 2 2333322222111 1110000 00000 00112456788999984 67877776 57655454
Q ss_pred HHHHHHHHHHhhhhCCCeEEEEEeCCC-cChHHHHHHHhhcCC----CCEEEecCCCcchH--HHHHHHcccceehh---
Q 016179 258 LPIFAKTVELLKDSFPELITVIHVAPN-RHVENYITGLIQKWP----VPSILVPGGSSNLK--YDAFSASRVALCTS--- 327 (394)
Q Consensus 258 l~~ll~a~~~l~~~~~~~~~vi~~g~~-~~~~~~l~~~~~~~~----~~v~~~~g~~~~~~--~~~~~~ADl~I~~S--- 327 (394)
+..+++|+..+.+ +++|+++++++. ..+++.++++...++ .++.+..++ ++. +.+|++||++++.|
T Consensus 855 vdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~--de~lah~iyaaADiflmPS~~E 930 (1036)
T PLN02316 855 IHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTY--DEPLSHLIYAGADFILVPSIFE 930 (1036)
T ss_pred HHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecC--CHHHHHHHHHhCcEEEeCCccc
Confidence 6778899888764 478998887652 223344555554332 246655443 343 47999999999999
Q ss_pred --hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 328 --GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 328 --Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|.+.+|||++|+|.|+ .+++++...+
T Consensus 931 P~GLvqLEAMa~GtppVv-s~vGGL~DtV 958 (1036)
T PLN02316 931 PCGLTQLTAMRYGSIPVV-RKTGGLFDTV 958 (1036)
T ss_pred CccHHHHHHHHcCCCeEE-EcCCCcHhhc
Confidence 8888899999999886 6777665544
No 61
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.36 E-value=4.7e-11 Score=118.28 Aligned_cols=289 Identities=14% Similarity=0.030 Sum_probs=148.2
Q ss_pred eEEEEeCC--chHHHH-HHHHHHHHHhcCCCCeEEEEecCh-h-hHh-ccCccccccCcceeccHHHhhhhHHHHHHHHH
Q 016179 33 RVFIVAGE--VSGDSI-GSRLMSAMKKLAPLPVSFSGVGGS-M-MSE-QGMKSLFPMEDIAVMGIWELLPHIYKFRVRLK 106 (394)
Q Consensus 33 kIlI~aG~--~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~-~-m~~-~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~ 106 (394)
||+++++. .||--. ..++++.|.+.+.+ +.++..... . .+. .-+.....-..+.+. .+.... +.....
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~---~~~~~~ 74 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVD-TRWEVIKGDPEFFNVTKKFHNALQGADIELS--EEEKEI---YLEWNE 74 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCC-ceEEecCCChhHHHHHHHhhHhhcCCCCCCC--HHHHHH---HHHHHH
Confidence 46555554 556444 66899999987775 777655432 1 110 000000000000000 011111 111111
Q ss_pred H-HHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCc-c-hHHHHHHHhhhheeecCc
Q 016179 107 E-TIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGG-E-ARLKNLAAFVDHILCILP 183 (394)
Q Consensus 107 ~-~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g-~-~r~~~l~~~~d~v~~~~p 183 (394)
+ +.+.+...+||+|++.+.. +..+....+.. ++|++.++ |..+..... . +..+++.+.+|.+++..+
T Consensus 75 ~~~~~~~~~~~~Dvv~~h~~~--~~~~~~~~~~~------~~~~i~~~--H~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 144 (372)
T cd03792 75 ENAERPLLDLDADVVVIHDPQ--PLALPLFKKKR------GRPWIWRC--HIDLSSPNRRVWDFLQPYIEDYDAAVFHLP 144 (372)
T ss_pred HHhccccccCCCCEEEECCCC--chhHHHhhhcC------CCeEEEEe--eeecCCCcHHHHHHHHHHHHhCCEEeecHH
Confidence 1 1123557799999976532 33333222211 57864443 322211000 0 123345566887776662
Q ss_pred ccHHHHHhcCCC--eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHH
Q 016179 184 NEEAICRLNGLA--ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIF 261 (394)
Q Consensus 184 ~~~~~~~~~g~~--~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~l 261 (394)
. +...+++ ..++.|.+... ..+.... .+.++...++++|+++++++|+.+| |-...| ....+
T Consensus 145 ~----~~~~~~~~~~~vipngvd~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~vg--rl~~~K-g~~~l 208 (372)
T cd03792 145 E----YVPPQVPPRKVIIPPSIDPL-SGKNREL--------SPADIEYILEKYGIDPERPYITQVS--RFDPWK-DPFGV 208 (372)
T ss_pred H----hcCCCCCCceEEeCCCCCCC-ccccCCC--------CHHHHHHHHHHhCCCCCCcEEEEEe--cccccc-CcHHH
Confidence 2 2222332 22444443211 0000000 0112346778899988888888763 443333 46778
Q ss_pred HHHHHHhhhhCCCeEEEEEeCCCcC---hHHHHHHHhhc--CCCCEEEecCC--CcchHHHHHHHcccceehh-----hH
Q 016179 262 AKTVELLKDSFPELITVIHVAPNRH---VENYITGLIQK--WPVPSILVPGG--SSNLKYDAFSASRVALCTS-----GT 329 (394)
Q Consensus 262 l~a~~~l~~~~~~~~~vi~~g~~~~---~~~~l~~~~~~--~~~~v~~~~g~--~~~~~~~~~~~ADl~I~~S-----Gt 329 (394)
+++++.+.+..+++++++++++... ..+..++..+. ...++.++... ..+++.++|++||+++..| |.
T Consensus 209 l~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~ 288 (372)
T cd03792 209 IDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGL 288 (372)
T ss_pred HHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCH
Confidence 8999988777788999988875321 12222332221 22246655331 1367889999999999988 56
Q ss_pred HHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 330 VAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 330 ~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
+.+||+++|+|+|+ .+.+.....+
T Consensus 289 ~~lEA~a~G~Pvv~-s~~~~~~~~i 312 (372)
T cd03792 289 TVTEALWKGKPVIA-GPVGGIPLQI 312 (372)
T ss_pred HHHHHHHcCCCEEE-cCCCCchhhc
Confidence 77799999999886 4555544444
No 62
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.34 E-value=4.7e-10 Score=111.41 Aligned_cols=165 Identities=17% Similarity=0.157 Sum_probs=99.6
Q ss_pred HHhhhheeecCcccHHHHHhc-C-C--C-eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEE
Q 016179 172 AAFVDHILCILPNEEAICRLN-G-L--A-ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 246 (394)
Q Consensus 172 ~~~~d~v~~~~p~~~~~~~~~-g-~--~-~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Illl 246 (394)
.+.+|.+++.++..++.+.+. + . + ..++-|++..... .+ ......++....+++.++++.+
T Consensus 152 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~--~~------------~~~~~~~~~~~~~~~~~~i~~~ 217 (392)
T cd03805 152 TGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSF--ES------------TSEDPDPGLLIPKSGKKTFLSI 217 (392)
T ss_pred hhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHc--Cc------------ccccccccccccCCCceEEEEE
Confidence 567999999999888876542 2 1 1 2244444433321 11 0111122333445556655554
Q ss_pred CCCcHHHHHhhHHHHHHHHHHhhhhC---CCeEEEEEeCCCcC------hHHHHHHHhhc-CCC--CEEEecCCCcchHH
Q 016179 247 PGSRLQEVARMLPIFAKTVELLKDSF---PELITVIHVAPNRH------VENYITGLIQK-WPV--PSILVPGGSSNLKY 314 (394)
Q Consensus 247 gGSrg~ei~~~l~~ll~a~~~l~~~~---~~~~~vi~~g~~~~------~~~~l~~~~~~-~~~--~v~~~~g~~~~~~~ 314 (394)
|. -.+ ++.+..++++++++.++. +++++++++++... +.+.+++..++ .+. ++.+......+++.
T Consensus 218 -gr-l~~-~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~ 294 (392)
T cd03805 218 -NR-FER-KKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKE 294 (392)
T ss_pred -ee-ecc-cCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHH
Confidence 33 222 234678899999998765 78999988875321 12334444444 333 46666332235678
Q ss_pred HHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 315 DAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 315 ~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
++|+.||+++..| |.+.+||+++|+|+|. .+.+.....+
T Consensus 295 ~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~-s~~~~~~e~i 338 (392)
T cd03805 295 LLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIA-CNSGGPLETV 338 (392)
T ss_pred HHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEE-ECCCCcHHHh
Confidence 9999999999877 5566799999999886 5555555554
No 63
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.32 E-value=1.2e-10 Score=117.89 Aligned_cols=280 Identities=10% Similarity=0.030 Sum_probs=150.4
Q ss_pred CCCceEEEEeCC----chHHHH-HHHHHHHHHhcC-CCCeEEEEecCh-----------------hhHhccCc-----cc
Q 016179 29 DGELRVFIVAGE----VSGDSI-GSRLMSAMKKLA-PLPVSFSGVGGS-----------------MMSEQGMK-----SL 80 (394)
Q Consensus 29 ~~~~kIlI~aG~----~sGh~~-a~~l~~~L~~~~-~~~~~~~g~gg~-----------------~m~~~g~~-----~~ 80 (394)
+++|||.|.|-. .+|=.. ...+++.|.+++ ++ +.++...-+ .-++..+. ..
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~he-V~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v 80 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDRE-VTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERI 80 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcE-EEEEecCCccccccccccccccccCchhhhhhhhhhccCeE
Confidence 457999888765 456433 566777888887 55 777643211 00111111 00
Q ss_pred cccCcceeccHHHhhhh-HHHHHHHHHHHHHHHHhcCCCEEEEeCCCCchHHH---HHHHHHhccccCCCCCeEEEeecC
Q 016179 81 FPMEDIAVMGIWELLPH-IYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRL---LKQLRARYSHERLNGPAHFHYVAP 156 (394)
Q Consensus 81 ~~~~~l~~~G~~~~l~~-~~~~~~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~l---a~~l~~~~~~~~~~ip~~~~yv~~ 156 (394)
.....+++..+.+.+.. .+.++ ...++.+.+++++||+|+..+ | |++.. +.++.++ ..+++.-|+.+
T Consensus 81 ~r~~s~~~p~yp~r~~~~~r~~~-~~~~i~~~l~~~~pDVIHv~t-P-~~LG~~~~g~~~~~k------~~~vV~tyHT~ 151 (462)
T PLN02846 81 SFLPKFSIKFYPGKFSTDKRSIL-PVGDISETIPDEEADIAVLEE-P-EHLTWYHHGKRWKTK------FRLVIGIVHTN 151 (462)
T ss_pred EEecccccccCcccccccccccC-ChHHHHHHHHhcCCCEEEEcC-c-hhhhhHHHHHHHHhc------CCcEEEEECCC
Confidence 11112222222221000 00011 134678889999999998753 4 45444 3444333 12343222221
Q ss_pred c-ccc--ccCc--c----hHHHH-HH-HhhhheeecCcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCC
Q 016179 157 S-FWA--WKGG--E----ARLKN-LA-AFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEG 225 (394)
Q Consensus 157 ~-~wa--~~~g--~----~r~~~-l~-~~~d~v~~~~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~ 225 (394)
- ... +..| . +..++ +. .+||.+++.++...+ +.+.++. ...| +..++. .+ .
T Consensus 152 y~~Y~~~~~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~~~~i~-~v~G--Vd~~~f--~~------------~ 213 (462)
T PLN02846 152 YLEYVKREKNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YPRSIIC-NVHG--VNPKFL--EI------------G 213 (462)
T ss_pred hHHHHHHhccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-HhhCEEe-cCce--echhhc--CC------------C
Confidence 1 000 0000 0 01112 22 348999988874444 5443221 1233 323322 11 1
Q ss_pred ChHHHHhhcCCCCCC--cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEE
Q 016179 226 NSEDFKNKYSVPSGA--TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSI 303 (394)
Q Consensus 226 ~~~~~r~~lgl~~~~--~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~ 303 (394)
.+ ..++..+ +++. ++++.+ +|-+. .+.+..++++++.+.+..+++++++++.+ ++ ++.+++..++.++++.
T Consensus 214 ~~-~~~~~~~-~~~~~~~~~l~v--GRL~~-eK~~~~Li~a~~~l~~~~~~~~l~ivGdG-p~-~~~L~~~a~~l~l~~~ 286 (462)
T PLN02846 214 KL-KLEQQKN-GEQAFTKGAYYI--GKMVW-SKGYKELLKLLHKHQKELSGLEVDLYGSG-ED-SDEVKAAAEKLELDVR 286 (462)
T ss_pred cc-cHhhhcC-CCCCcceEEEEE--ecCcc-cCCHHHHHHHHHHHHhhCCCeEEEEECCC-cc-HHHHHHHHHhcCCcEE
Confidence 11 1222222 3332 334444 46554 34578899999988777788998888776 43 3456777766666666
Q ss_pred EecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEE
Q 016179 304 LVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAY 345 (394)
Q Consensus 304 ~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y 345 (394)
++.|+ .+..++|+.+|++|..| |.+++||+|+|+|+|...
T Consensus 287 vf~G~--~~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~ 331 (462)
T PLN02846 287 VYPGR--DHADPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 331 (462)
T ss_pred EECCC--CCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEec
Confidence 67674 46668999999999999 788889999999988653
No 64
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=2.2e-10 Score=106.04 Aligned_cols=241 Identities=16% Similarity=0.181 Sum_probs=136.1
Q ss_pred ceEEEEe-CC---chHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHH
Q 016179 32 LRVFIVA-GE---VSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLK 106 (394)
Q Consensus 32 ~kIlI~a-G~---~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~ 106 (394)
|||+|.+ |+ +.||++ -..|+++|++++ ..+...+++..++ ++...++ |+... ..
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~---~~~~fl~k~~~e~-~~~~~~~-------~f~~~----------~~ 59 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRG---FACLFLTKQDIEA-IIHKVYE-------GFKVL----------EG 59 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcC---ceEEEecccchhh-hhhhhhh-------hccce----------ee
Confidence 6776654 44 568999 889999999874 4566666665543 2221111 11100 01
Q ss_pred HHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCccc-
Q 016179 107 ETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNE- 185 (394)
Q Consensus 107 ~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~- 185 (394)
+.-+.|++.++|++| +|+.+.+.-..+.++.. .+.|+ +.+..+.- ++ ++|..+++-+..
T Consensus 60 ~~~n~ik~~k~d~lI-~Dsygl~~dd~k~ik~e-----~~~k~-l~fDd~~~----~~---------~~d~d~ivN~~~~ 119 (318)
T COG3980 60 RGNNLIKEEKFDLLI-FDSYGLNADDFKLIKEE-----AGSKI-LIFDDENA----KS---------FKDNDLIVNAILN 119 (318)
T ss_pred ecccccccccCCEEE-EeccCCCHHHHHHHHHH-----hCCcE-EEecCCCc----cc---------hhhhHhhhhhhhc
Confidence 112378899999888 57557888888777732 15674 44433221 11 112222222111
Q ss_pred -HHHHHhcCCCe-EEEc---CCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHH
Q 016179 186 -EAICRLNGLAA-TFVG---HPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPI 260 (394)
Q Consensus 186 -~~~~~~~g~~~-~~vG---~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ 260 (394)
.+.+-.-+.++ .+.| -|+|++|.. .+++.+++ +-+.++.-+|||-... .
T Consensus 120 a~~~y~~v~~k~~~~lGp~y~~lr~eF~~----------------~r~~~~~r----~~r~ilI~lGGsDpk~------l 173 (318)
T COG3980 120 ANDYYGLVPNKTRYYLGPGYAPLRPEFYA----------------LREENTER----PKRDILITLGGSDPKN------L 173 (318)
T ss_pred chhhccccCcceEEEecCCceeccHHHHH----------------hHHHHhhc----chheEEEEccCCChhh------h
Confidence 11111111234 3555 378888863 34555544 3334566678876532 2
Q ss_pred HHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCC
Q 016179 261 FAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLP 340 (394)
Q Consensus 261 ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P 340 (394)
.++.++.+.+..-++.+|+. ..++.+.+. ....+.++ ++.++.. .+||+++|..||++|+.+|.++-|++..|+|
T Consensus 174 t~kvl~~L~~~~~nl~iV~g-s~~p~l~~l-~k~~~~~~-~i~~~~~--~~dma~LMke~d~aI~AaGstlyEa~~lgvP 248 (318)
T COG3980 174 TLKVLAELEQKNVNLHIVVG-SSNPTLKNL-RKRAEKYP-NINLYID--TNDMAELMKEADLAISAAGSTLYEALLLGVP 248 (318)
T ss_pred HHHHHHHhhccCeeEEEEec-CCCcchhHH-HHHHhhCC-CeeeEec--chhHHHHHHhcchheeccchHHHHHHHhcCC
Confidence 44566666554324554444 233445443 33333333 5655533 5789999999999999988777799999999
Q ss_pred EEEE
Q 016179 341 CVVA 344 (394)
Q Consensus 341 ~Iv~ 344 (394)
+.++
T Consensus 249 ~l~l 252 (318)
T COG3980 249 SLVL 252 (318)
T ss_pred ceEE
Confidence 7655
No 65
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.32 E-value=5.5e-10 Score=110.33 Aligned_cols=210 Identities=11% Similarity=0.007 Sum_probs=120.3
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcc
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPN 184 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~ 184 (394)
+.++.+.+++++||+|++.+. .+..++..+++.. +.|..+....+.... ........+ .+.+|.+++.++.
T Consensus 73 ~~~l~~~l~~~~~Dii~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~h~~~~-~~~~~~~~~-~~~~d~~i~~S~~ 143 (359)
T PRK09922 73 VYNFSKWLKETQPDIVICIDV--ISCLYANKARKKS-----GKQFKIFSWPHFSLD-HKKHAECKK-ITCADYHLAISSG 143 (359)
T ss_pred HHHHHHHHHhcCCCEEEEcCH--HHHHHHHHHHHHh-----CCCCeEEEEecCccc-ccchhhhhh-hhcCCEEEEcCHH
Confidence 456678899999999998752 2333333333221 334211111121100 000001111 3679999999999
Q ss_pred cHHHHHhcCCC---eEEEcCCCch-hhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHH-HHHhhHH
Q 016179 185 EEAICRLNGLA---ATFVGHPVVE-DCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQ-EVARMLP 259 (394)
Q Consensus 185 ~~~~~~~~g~~---~~~vG~Pv~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~-ei~~~l~ 259 (394)
.++.+.++|++ +.++.||+.. .+.. . .. -.++.++++.+| .... ..+ .+.
T Consensus 144 ~~~~~~~~~~~~~ki~vi~N~id~~~~~~-~-------------~~---------~~~~~~~i~~~G-rl~~~~~k-~~~ 198 (359)
T PRK09922 144 IKEQMMARGISAQRISVIYNPVEIKTIII-P-------------PP---------ERDKPAVFLYVG-RLKFEGQK-NVK 198 (359)
T ss_pred HHHHHHHcCCCHHHEEEEcCCCCHHHccC-C-------------Cc---------ccCCCcEEEEEE-EEecccCc-CHH
Confidence 99988877764 6778888852 2210 0 00 012345666654 3211 122 345
Q ss_pred HHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCC---cchHHHHHHHcccceehh-----hH
Q 016179 260 IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS---SNLKYDAFSASRVALCTS-----GT 329 (394)
Q Consensus 260 ~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~---~~~~~~~~~~ADl~I~~S-----Gt 329 (394)
.+++++..+. +++++++++.+. + ++.+++..++.+. ++.+. |+. .+++.++|+.||++|..| |.
T Consensus 199 ~l~~a~~~~~---~~~~l~ivG~g~-~-~~~l~~~~~~~~l~~~v~f~-G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~ 272 (359)
T PRK09922 199 ELFDGLSQTT---GEWQLHIIGDGS-D-FEKCKAYSRELGIEQRIIWH-GWQSQPWEVVQQKIKNVSALLLTSKFEGFPM 272 (359)
T ss_pred HHHHHHHhhC---CCeEEEEEeCCc-c-HHHHHHHHHHcCCCCeEEEe-cccCCcHHHHHHHHhcCcEEEECCcccCcCh
Confidence 5777776653 478989888653 3 3446666655443 46655 432 135677888899999988 45
Q ss_pred HHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 330 VAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 330 ~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
+.+|||+||+|+|.....+.....+
T Consensus 273 ~~lEAma~G~Pvv~s~~~~g~~eiv 297 (359)
T PRK09922 273 TLLEAMSYGIPCISSDCMSGPRDII 297 (359)
T ss_pred HHHHHHHcCCCEEEeCCCCChHHHc
Confidence 6669999999988644255554444
No 66
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.30 E-value=7e-10 Score=110.97 Aligned_cols=167 Identities=13% Similarity=0.029 Sum_probs=101.9
Q ss_pred HHhhhheeecCcccHHHHHh-cCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCc
Q 016179 172 AAFVDHILCILPNEEAICRL-NGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSR 250 (394)
Q Consensus 172 ~~~~d~v~~~~p~~~~~~~~-~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSr 250 (394)
.+.+|.+++.++..++.+.+ .+-++.++.|++..+. +.+. +......+...+++++.++|+..|.+-
T Consensus 154 ~~~ad~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~--f~~~----------~~~~~~~~~~~~~~~~~~~i~~vgR~l 221 (396)
T cd03818 154 LAQADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDR--LRPD----------PQARLRLPNGRVLTPGDEVITFVARNL 221 (396)
T ss_pred HHhCCEEECCCHHHHhhCcHhhccceEEeCCCccccc--cCCC----------chhhhcccccccCCCCCeEEEEECCCc
Confidence 56799999999988887754 2345777777764332 1110 001111222333556677777664322
Q ss_pred HHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc----------ChHHH-HHHHhhcC-CCCEEEecCCC-cchHHHHH
Q 016179 251 LQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR----------HVENY-ITGLIQKW-PVPSILVPGGS-SNLKYDAF 317 (394)
Q Consensus 251 g~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~----------~~~~~-l~~~~~~~-~~~v~~~~g~~-~~~~~~~~ 317 (394)
. -.+.++.+++++..+.++.|+++++++++... .+.+. +++..... ..++.+. |+. .+++.++|
T Consensus 222 ~--~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~-G~v~~~~~~~~l 298 (396)
T cd03818 222 E--PYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFL-GRVPYDQYLALL 298 (396)
T ss_pred c--cccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEe-CCCCHHHHHHHH
Confidence 2 22346788999999887789999999986321 11111 22221111 1246665 432 46799999
Q ss_pred HHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 318 SASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 318 ~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
+.||+.|..| |.+.+|||+||+|+|. ...+.....+
T Consensus 299 ~~adv~v~~s~~e~~~~~llEAmA~G~PVIa-s~~~g~~e~i 339 (396)
T cd03818 299 QVSDVHVYLTYPFVLSWSLLEAMACGCLVVG-SDTAPVREVI 339 (396)
T ss_pred HhCcEEEEcCcccccchHHHHHHHCCCCEEE-cCCCCchhhc
Confidence 9999999877 3355699999999886 5555555554
No 67
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.30 E-value=2.2e-09 Score=104.27 Aligned_cols=280 Identities=14% Similarity=0.043 Sum_probs=154.2
Q ss_pred eEEEEeCC-ch-HHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHH
Q 016179 33 RVFIVAGE-VS-GDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIE 110 (394)
Q Consensus 33 kIlI~aG~-~s-Gh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~ 110 (394)
||++++.. +. +..+...+++.|.+.+.+ +.++......-.... ... .......+........+.....+.+
T Consensus 1 ki~~~~~~~~~~~~~~~~~~~~~L~~~g~~-v~v~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (355)
T cd03799 1 KIAYLVKEFPRLSETFILREILALEAAGHE-VEIFSLRPPEDTLVH-PED-----RAELARTRYLARSLALLAQALVLAR 73 (355)
T ss_pred CEEEECCCCCCcchHHHHHHHHHHHhCCCe-EEEEEecCccccccc-ccc-----cccccchHHHHHHHHHHHHHHHHHH
Confidence 46666655 33 455577888888887764 777655432110000 000 0000011111222222333445566
Q ss_pred HHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHH
Q 016179 111 AALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICR 190 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~ 190 (394)
.+++.+||+|++.. +..+..+ ..+.++.. ++|.+++...+..|.... ....++..+.+|.+++.++..++.+.
T Consensus 74 ~~~~~~~Dii~~~~-~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~~s~~~~~~l~ 146 (355)
T cd03799 74 ELRRLGIDHIHAHF-GTTPATV-AMLASRLG----GIPYSFTAHGKDIFRSPD-AIDLDEKLARADFVVAISEYNRQQLI 146 (355)
T ss_pred HHHhcCCCEEEECC-CCchHHH-HHHHHHhc----CCCEEEEEecccccccCc-hHHHHHHHhhCCEEEECCHHHHHHHH
Confidence 67789999999753 2122222 23322211 567544433333332211 01334567789999999999999887
Q ss_pred hc-CC---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHH
Q 016179 191 LN-GL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVE 266 (394)
Q Consensus 191 ~~-g~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~ 266 (394)
+. +. ++.++.|++...... . .. ...+.+...|+.+ |+.. . .+....++++++
T Consensus 147 ~~~~~~~~~~~vi~~~~d~~~~~--~-------------~~------~~~~~~~~~i~~~-g~~~-~-~k~~~~l~~~~~ 202 (355)
T cd03799 147 RLLGCDPDKIHVVHCGVDLERFP--P-------------RP------PPPPGEPLRILSV-GRLV-E-KKGLDYLLEALA 202 (355)
T ss_pred HhcCCCcccEEEEeCCcCHHHcC--C-------------cc------ccccCCCeEEEEE-eeec-c-ccCHHHHHHHHH
Confidence 75 33 366777776544321 0 00 0122334445544 4432 2 234677889999
Q ss_pred HhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEEEecCCC-cchHHHHHHHcccceehhh-----------HHHH
Q 016179 267 LLKDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGS-SNLKYDAFSASRVALCTSG-----------TVAV 332 (394)
Q Consensus 267 ~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~~~~g~~-~~~~~~~~~~ADl~I~~SG-----------t~tl 332 (394)
.+.+..+++++++++.+. . .+.+++...+++ .++.+. |+. .+++.++|+.||+++..|- ...+
T Consensus 203 ~l~~~~~~~~l~i~G~~~-~-~~~~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~ 279 (355)
T cd03799 203 LLKDRGIDFRLDIVGDGP-L-RDELEALIAELGLEDRVTLL-GAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLM 279 (355)
T ss_pred HHhhcCCCeEEEEEECCc-c-HHHHHHHHHHcCCCCeEEEC-CcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHH
Confidence 887766789988887653 2 233444444433 246655 332 3689999999999999652 3445
Q ss_pred HHHHcCCCEEEEEcCChHHHHH
Q 016179 333 ELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 333 Ea~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|++++|+|+|. .+.+.....+
T Consensus 280 Ea~a~G~Pvi~-~~~~~~~~~i 300 (355)
T cd03799 280 EAMAMGLPVIS-TDVSGIPELV 300 (355)
T ss_pred HHHHcCCCEEe-cCCCCcchhh
Confidence 99999999886 4444444433
No 68
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.29 E-value=7.1e-10 Score=109.77 Aligned_cols=286 Identities=13% Similarity=0.014 Sum_probs=150.4
Q ss_pred chHHHH-HHHHHHHHHhcCCCCeEEEEecChh-hHh-ccCccccccCcceeccH--HHhhhhHHHHHHHHHHHHHHHHhc
Q 016179 41 VSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSM-MSE-QGMKSLFPMEDIAVMGI--WELLPHIYKFRVRLKETIEAALLF 115 (394)
Q Consensus 41 ~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~-m~~-~g~~~~~~~~~l~~~G~--~~~l~~~~~~~~~~~~~~~~i~~~ 115 (394)
.||.-. ...++++|.+++.+ +.++....+. ... ...........++.... .........+......+.+.+++.
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~-V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (398)
T cd03800 20 TGGQNVYVLELARALARLGHE-VDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRRE 98 (398)
T ss_pred CCceeehHHHHHHHHhccCce-EEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhc
Confidence 466554 67899999887764 7776543221 110 00111111111111100 000001111222334456667777
Q ss_pred --CCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccC-----------cc--hHHHHHHHhhhheee
Q 016179 116 --RPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKG-----------GE--ARLKNLAAFVDHILC 180 (394)
Q Consensus 116 --~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~-----------g~--~r~~~l~~~~d~v~~ 180 (394)
+||+|++.+. ....++..+++.. ++|++..+ +..+.... .. ..-+++.+.+|.+++
T Consensus 99 ~~~~Div~~~~~--~~~~~~~~~~~~~-----~~~~i~~~--h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 169 (398)
T cd03800 99 GGRPDLIHAHYW--DSGLVALLLARRL-----GIPLVHTF--HSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIA 169 (398)
T ss_pred CCCccEEEEecC--ccchHHHHHHhhc-----CCceEEEe--ecccccCCcccccccccchhhhhhHHHHHHhhCCEEEE
Confidence 9999997642 2222222232221 67853222 22111000 00 011234667999999
Q ss_pred cCcccHHHHHhcC-C---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHh
Q 016179 181 ILPNEEAICRLNG-L---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVAR 256 (394)
Q Consensus 181 ~~p~~~~~~~~~g-~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~ 256 (394)
.++...+.+.+.+ . ++.++.|++..... .+ ..+....+++++.+++.++|+.+ |+.. . .+
T Consensus 170 ~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~i~~~-gr~~-~-~k 233 (398)
T cd03800 170 STPQEAEELYSLYGAYPRRIRVVPPGVDLERF--TP-----------YGRAEARRARLLRDPDKPRILAV-GRLD-P-RK 233 (398)
T ss_pred cCHHHHHHHHHHccccccccEEECCCCCccce--ec-----------ccchhhHHHhhccCCCCcEEEEE-cccc-c-cc
Confidence 9998877765533 2 24566555532211 10 01111224556666666666655 4433 2 23
Q ss_pred hHHHHHHHHHHhhhhCCCeEEEEEeCCCcChH----HHHHHHhhcCC--CCEEEecCCC-cchHHHHHHHcccceehh--
Q 016179 257 MLPIFAKTVELLKDSFPELITVIHVAPNRHVE----NYITGLIQKWP--VPSILVPGGS-SNLKYDAFSASRVALCTS-- 327 (394)
Q Consensus 257 ~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~----~~l~~~~~~~~--~~v~~~~g~~-~~~~~~~~~~ADl~I~~S-- 327 (394)
.+..+++++..+.++.++++++++++...... ..++...+..+ .++.++ |+. .+++.++++.||+++..|
T Consensus 234 ~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-g~~~~~~~~~~~~~adi~l~ps~~ 312 (398)
T cd03800 234 GIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFP-GRVSREDLPALYRAADVFVNPALY 312 (398)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEe-ccCCHHHHHHHHHhCCEEEecccc
Confidence 46678899999887778899999987543211 11222333332 246655 332 357999999999999877
Q ss_pred ---hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 328 ---GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 328 ---Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|.+.+||+++|+|+|+ .+.++....+
T Consensus 313 e~~~~~l~Ea~a~G~Pvi~-s~~~~~~e~i 341 (398)
T cd03800 313 EPFGLTALEAMACGLPVVA-TAVGGPRDIV 341 (398)
T ss_pred cccCcHHHHHHhcCCCEEE-CCCCCHHHHc
Confidence 3455599999999875 5566655555
No 69
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.27 E-value=7.8e-10 Score=110.57 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=68.1
Q ss_pred CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHH
Q 016179 238 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF 317 (394)
Q Consensus 238 ~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 317 (394)
+++++|++..||....-...+..+++++. + .+.++++.+|++.+.. .++ ....++.+. ++ .+ ..++|
T Consensus 223 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~---~--~~~~~i~~~g~~~~~~-~~~----~~~~~v~~~-~~-~p-~~~ll 289 (392)
T TIGR01426 223 DGRPVVLISLGTVFNNQPSFYRTCVEAFR---D--LDWHVVLSVGRGVDPA-DLG----ELPPNVEVR-QW-VP-QLEIL 289 (392)
T ss_pred CCCCEEEEecCccCCCCHHHHHHHHHHHh---c--CCCeEEEEECCCCChh-Hhc----cCCCCeEEe-CC-CC-HHHHH
Confidence 56788999888853211113333444433 2 2467888887643321 121 223356655 33 23 35899
Q ss_pred HHcccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhcc
Q 016179 318 SASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAK 360 (394)
Q Consensus 318 ~~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~vk 360 (394)
+.||++|+.+|+.|+ |++++|+|+|+++...- .+..++++.+
T Consensus 290 ~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~l~~ 332 (392)
T TIGR01426 290 KKADAFITHGGMNSTMEALFNGVPMVAVPQGAD-QPMTARRIAE 332 (392)
T ss_pred hhCCEEEECCCchHHHHHHHhCCCEEecCCccc-HHHHHHHHHH
Confidence 999999999999876 99999999999865532 3445666654
No 70
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.27 E-value=1.6e-09 Score=103.25 Aligned_cols=298 Identities=15% Similarity=0.137 Sum_probs=156.9
Q ss_pred CCceEEEEeCCch--HHHH-HHHHHHHHHhcCCCCeEEEEe-cChhh---H-hccCccccccCcce--eccHH---Hhhh
Q 016179 30 GELRVFIVAGEVS--GDSI-GSRLMSAMKKLAPLPVSFSGV-GGSMM---S-EQGMKSLFPMEDIA--VMGIW---ELLP 96 (394)
Q Consensus 30 ~~~kIlI~aG~~s--Gh~~-a~~l~~~L~~~~~~~~~~~g~-gg~~m---~-~~g~~~~~~~~~l~--~~G~~---~~l~ 96 (394)
..+||++=+-.+. ||+. +..|++.|.+..++ .++..+ ||+.. . .+|++.. .+..+. -.|.. +.--
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~-~~Il~IsG~~~~~~F~~~~gVd~V-~LPsl~k~~~G~~~~~d~~~ 85 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLG-FDILIISGGPPAGGFPGPAGVDFV-KLPSLIKGDNGEYGLVDLDG 85 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccC-ceEEEEeCCCccCCCCCcccCceE-ecCceEecCCCceeeeecCC
Confidence 4568998888754 6999 99999999987665 776544 33421 1 1333321 111111 11221 0000
Q ss_pred hHHHHHHHH-HHHHHHHHhcCCCEEEEeC-CCCc-h---HHHHHHHHHhccccCCCCCe-----EEEeecCcc--ccccC
Q 016179 97 HIYKFRVRL-KETIEAALLFRPHAVVTVD-SKGF-S---FRLLKQLRARYSHERLNGPA-----HFHYVAPSF--WAWKG 163 (394)
Q Consensus 97 ~~~~~~~~~-~~~~~~i~~~~PD~Vi~~~-~~~f-~---~~la~~l~~~~~~~~~~ip~-----~~~yv~~~~--wa~~~ 163 (394)
.+-.+.+.- .-++..++.+|||++|. | +|.- - ......++..+ ..++ +.+ .|+. -.|+.
T Consensus 86 ~l~e~~~~Rs~lil~t~~~fkPDi~IV-d~~P~Glr~EL~ptL~yl~~~~-----t~~vL~lr~i~D--~p~~~~~~w~~ 157 (400)
T COG4671 86 DLEETKKLRSQLILSTAETFKPDIFIV-DKFPFGLRFELLPTLEYLKTTG-----TRLVLGLRSIRD--IPQELEADWRR 157 (400)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEE-eccccchhhhhhHHHHHHhhcC-----CcceeehHhhhh--chhhhccchhh
Confidence 011111111 12466778999998884 6 3311 0 12334444331 1232 112 2322 11221
Q ss_pred cchHHHHHHHhhhheeecCc-ccHHHHHhcCC------CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCC
Q 016179 164 GEARLKNLAAFVDHILCILP-NEEAICRLNGL------AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSV 236 (394)
Q Consensus 164 g~~r~~~l~~~~d~v~~~~p-~~~~~~~~~g~------~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl 236 (394)
. .-...+.++-|.|.+--+ .-.+....+.. +++|||-- ...+.... ....+ .
T Consensus 158 ~-~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~v-q~~~~~~~-------------~p~~~-----~- 216 (400)
T COG4671 158 A-ETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFV-QRSLPHLP-------------LPPHE-----A- 216 (400)
T ss_pred h-HHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEe-eccCcCCC-------------CCCcC-----C-
Confidence 0 012346889999886553 32332222222 36788853 11111000 00000 0
Q ss_pred CCCCcEEEEECCCcH-HHHHhhHHHHHHHHHHhhhhCCCeE--EEEEeCCCcChHHHHHHHhhcC--CCCEEEecCCCcc
Q 016179 237 PSGATVISLLPGSRL-QEVARMLPIFAKTVELLKDSFPELI--TVIHVAPNRHVENYITGLIQKW--PVPSILVPGGSSN 311 (394)
Q Consensus 237 ~~~~~~IlllgGSrg-~ei~~~l~~ll~a~~~l~~~~~~~~--~vi~~g~~~~~~~~l~~~~~~~--~~~v~~~~g~~~~ 311 (394)
++...++...||++- +| ++..+++|...+ ++++ .++++|++-- +...+++...- ..+++++.+ .+
T Consensus 217 pE~~~Ilvs~GGG~dG~e---Li~~~l~A~~~l----~~l~~~~~ivtGP~MP-~~~r~~l~~~A~~~p~i~I~~f--~~ 286 (400)
T COG4671 217 PEGFDILVSVGGGADGAE---LIETALAAAQLL----AGLNHKWLIVTGPFMP-EAQRQKLLASAPKRPHISIFEF--RN 286 (400)
T ss_pred CccceEEEecCCChhhHH---HHHHHHHHhhhC----CCCCcceEEEeCCCCC-HHHHHHHHHhcccCCCeEEEEh--hh
Confidence 233333444444443 23 334555555544 3443 7888998632 22223322221 236788765 68
Q ss_pred hHHHHHHHcccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHH--HHhhccCCccchhhhhc
Q 016179 312 LKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWF--IRYKAKIPYISLPNILL 371 (394)
Q Consensus 312 ~~~~~~~~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~--a~~~vk~~~~~l~Nil~ 371 (394)
++.++|+.||.+|+.+|-.|. |...+|+|++++....+-..++ |+++- -.+|...|.
T Consensus 287 ~~~~ll~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~---~LGL~dvL~ 346 (400)
T COG4671 287 DFESLLAGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLE---ELGLVDVLL 346 (400)
T ss_pred hHHHHHHhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHH---hcCcceeeC
Confidence 999999999999999999887 9999999999998777666666 45665 345555554
No 71
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.26 E-value=1.7e-10 Score=119.57 Aligned_cols=208 Identities=11% Similarity=0.016 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHH---HHHHHhccccCCCCCeEEEeecCc-ccc--ccCc--ch----HHHHH-
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLL---KQLRARYSHERLNGPAHFHYVAPS-FWA--WKGG--EA----RLKNL- 171 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la---~~l~~~~~~~~~~ip~~~~yv~~~-~wa--~~~g--~~----r~~~l- 171 (394)
+..+.+.+.+++||+|++.. | +++..+ .++.++. + |++..|+-+- ..+ +..+ .. .++++
T Consensus 423 ~gdI~~~L~~f~PDVVHLat-P-~~LGw~~~Glr~ArKl-----~-PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v 494 (794)
T PLN02501 423 AGDTSQFIPSKDADIAILEE-P-EHLNWYHHGKRWTDKF-----N-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWV 494 (794)
T ss_pred hHHHHHHhhccCCCEEEECC-c-hhhccHHHHHHHHHHc-----C-CeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHH
Confidence 56778899999999999864 4 444333 2233331 4 7544443221 001 0001 00 11122
Q ss_pred HHh-hhheeecCcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCc
Q 016179 172 AAF-VDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSR 250 (394)
Q Consensus 172 ~~~-~d~v~~~~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSr 250 (394)
.++ ||++++.+.... .+.+.++ ...|-|..++. . +..+...++++|++.+.+.++++| |
T Consensus 495 ~r~hcD~VIaPS~atq-~L~~~vI---~nVnGVDte~F--~------------P~~r~~~~r~lgi~~~~kgiLfVG--R 554 (794)
T PLN02501 495 TRAYCHKVLRLSAATQ-DLPKSVI---CNVHGVNPKFL--K------------IGEKVAEERELGQQAFSKGAYFLG--K 554 (794)
T ss_pred HHhhCCEEEcCCHHHH-Hhcccce---eeccccccccc--C------------CcchhHHHHhcCCccccCceEEEE--c
Confidence 322 799998886555 3443332 22233322322 1 122333345677766555566663 6
Q ss_pred HHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehh---
Q 016179 251 LQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS--- 327 (394)
Q Consensus 251 g~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S--- 327 (394)
-..-| .+..++++++.+.+..+++++++++.+ +. ++.+++...+.++++.++.+ .++..++|+.+|++|..|
T Consensus 555 La~EK-Gld~LLeAla~L~~~~pnvrLvIVGDG-P~-reeLe~la~eLgL~V~FLG~--~dd~~~lyasaDVFVlPS~sE 629 (794)
T PLN02501 555 MVWAK-GYRELIDLLAKHKNELDGFNLDVFGNG-ED-AHEVQRAAKRLDLNLNFLKG--RDHADDSLHGYKVFINPSISD 629 (794)
T ss_pred ccccC-CHHHHHHHHHHHHhhCCCeEEEEEcCC-cc-HHHHHHHHHHcCCEEEecCC--CCCHHHHHHhCCEEEECCCcc
Confidence 55434 467899999988776788999888866 33 34566666666666666543 567888999999999999
Q ss_pred --hHHHHHHHHcCCCEEEEE
Q 016179 328 --GTVAVELQLARLPCVVAY 345 (394)
Q Consensus 328 --Gt~tlEa~a~G~P~Iv~y 345 (394)
|.+++||+|||+|+|...
T Consensus 630 gFGlVlLEAMA~GlPVVATd 649 (794)
T PLN02501 630 VLCTATAEALAMGKFVVCAD 649 (794)
T ss_pred cchHHHHHHHHcCCCEEEec
Confidence 778889999999988753
No 72
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.25 E-value=2.8e-09 Score=103.67 Aligned_cols=283 Identities=13% Similarity=0.031 Sum_probs=145.1
Q ss_pred eEEEEeCC----chH-HHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHH
Q 016179 33 RVFIVAGE----VSG-DSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKE 107 (394)
Q Consensus 33 kIlI~aG~----~sG-h~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~ 107 (394)
||++++.. .|| ..+...++++|.+.+.+ ++++................+...+...+..........++..+
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 77 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIE-VAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQL-- 77 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCc-eEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHH--
Confidence 45555422 345 45578899999987764 88776653221110000000111111111111111111111111
Q ss_pred HHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCc---cccccCcchHHHHHHHhhhheeecCcc
Q 016179 108 TIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPS---FWAWKGGEARLKNLAAFVDHILCILPN 184 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~---~wa~~~g~~r~~~l~~~~d~v~~~~p~ 184 (394)
+ ++..+||+|++.+ +.....+...+..+ ++|.++++.... .+.+.......+++.+.+|.+++.++.
T Consensus 78 --~-~~~~~~Dii~~~~-~~~~~~~~~~~~~~------~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~ 147 (357)
T cd03795 78 --K-KLAKKADVIHLHF-PNPLADLALLLLPR------KKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPN 147 (357)
T ss_pred --H-hcCCCCCEEEEec-CcchHHHHHHHhcc------CceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHH
Confidence 1 5678999888754 21122222222211 567655553211 011110001223457789999999998
Q ss_pred cHHHHHhc---CCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHH
Q 016179 185 EEAICRLN---GLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIF 261 (394)
Q Consensus 185 ~~~~~~~~---g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~l 261 (394)
..+.+... ..++.++.|++...... + ...........+.+.++|+.. |+.. +.+ ....+
T Consensus 148 ~~~~~~~~~~~~~~~~~i~~gi~~~~~~--~-------------~~~~~~~~~~~~~~~~~i~~~-G~~~-~~K-~~~~l 209 (357)
T cd03795 148 YAETSPVLRRFRDKVRVIPLGLDPARYP--R-------------PDALEEAIWRRAAGRPFFLFV-GRLV-YYK-GLDVL 209 (357)
T ss_pred HHHHHHHhcCCccceEEecCCCChhhcC--C-------------cchhhhHhhcCCCCCcEEEEe-cccc-ccc-CHHHH
Confidence 87765432 23566777776443221 0 011000223344555655554 4433 233 46678
Q ss_pred HHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEEEecCCC-cchHHHHHHHcccceehh-------hHHH
Q 016179 262 AKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGS-SNLKYDAFSASRVALCTS-------GTVA 331 (394)
Q Consensus 262 l~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~~~~g~~-~~~~~~~~~~ADl~I~~S-------Gt~t 331 (394)
+++++++. ++++++++.+. ....+++..++.+ .++.+. |+. .+++.++++.||+++..| |.+.
T Consensus 210 i~a~~~l~----~~~l~i~G~g~--~~~~~~~~~~~~~~~~~V~~~-g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~ 282 (357)
T cd03795 210 LEAAAALP----DAPLVIVGEGP--LEAELEALAAALGLLDRVRFL-GRLDDEEKAALLAACDVFVFPSVERSEAFGIVL 282 (357)
T ss_pred HHHHHhcc----CcEEEEEeCCh--hHHHHHHHHHhcCCcceEEEc-CCCCHHHHHHHHHhCCEEEeCCcccccccchHH
Confidence 88888774 68888887653 2344555443332 357665 443 356899999999999776 5556
Q ss_pred HHHHHcCCCEEEEEcCChHHHHH
Q 016179 332 VELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 332 lEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
+||+++|+|+|. .+.+.....+
T Consensus 283 ~Ea~~~g~Pvi~-~~~~~~~~~i 304 (357)
T cd03795 283 LEAMAFGKPVIS-TEIGTGGSYV 304 (357)
T ss_pred HHHHHcCCCEEe-cCCCCchhHH
Confidence 699999999886 4555444333
No 73
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.23 E-value=3e-09 Score=102.82 Aligned_cols=264 Identities=13% Similarity=-0.003 Sum_probs=140.6
Q ss_pred ceEEEEeC--------CchH-HHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHH
Q 016179 32 LRVFIVAG--------EVSG-DSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFR 102 (394)
Q Consensus 32 ~kIlI~aG--------~~sG-h~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~ 102 (394)
|||++++. ..|| ..+...++++|.+.+.+ +.++...+........... + . ..............
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~-V~v~~~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~ 73 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHE-VTLFASGDSKTAAPLVPVV-P---E--PLRLDAPGRDRAEA 73 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCce-EEEEecCCCCcccceeecc-C---C--CcccccchhhHhhH
Confidence 68877654 2233 66688999999987764 7777765532111101100 0 0 00000011112233
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecC
Q 016179 103 VRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCIL 182 (394)
Q Consensus 103 ~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~ 182 (394)
.....+.+.+++.+||+|++.+.. ...++ .+ . .++|++.+... ..+.+. . +........+.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~Divh~~~~~--~~~~~--~~-~-----~~~~~v~~~h~-~~~~~~-~--~~~~~~~~~~~~~~~s 139 (335)
T cd03802 74 EALALAERALAAGDFDIVHNHSLH--LPLPF--AR-P-----LPVPVVTTLHG-PPDPEL-L--KLYYAARPDVPFVSIS 139 (335)
T ss_pred HHHHHHHHHHhcCCCCEEEecCcc--cchhh--hc-c-----cCCCEEEEecC-CCCccc-c--hHHHhhCcCCeEEEec
Confidence 445567788889999999986532 22211 11 1 16786433211 111111 1 2222344567777777
Q ss_pred cccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHH
Q 016179 183 PNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFA 262 (394)
Q Consensus 183 p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll 262 (394)
+...+.+... .++.++.|++..... . . .+.+++.|+.+ | |-.+.+. ...++
T Consensus 140 ~~~~~~~~~~-~~~~vi~ngvd~~~~--~---------------~--------~~~~~~~i~~~-G-r~~~~Kg-~~~li 190 (335)
T cd03802 140 DAQRRPWPPL-PWVATVHNGIDLDDY--P---------------F--------RGPKGDYLLFL-G-RISPEKG-PHLAI 190 (335)
T ss_pred HHHHhhcccc-cccEEecCCcChhhC--C---------------C--------CCCCCCEEEEE-E-eeccccC-HHHHH
Confidence 7776665443 356667666533221 1 0 01234455555 3 3333443 45566
Q ss_pred HHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcC---CCCEEEecCCC-cchHHHHHHHcccceehh------hHHHH
Q 016179 263 KTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW---PVPSILVPGGS-SNLKYDAFSASRVALCTS------GTVAV 332 (394)
Q Consensus 263 ~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~---~~~v~~~~g~~-~~~~~~~~~~ADl~I~~S------Gt~tl 332 (394)
++++. .++++++++.+.. . +......... ..++.+. |+. .+++.++|+.||+++..| |.+.+
T Consensus 191 ~~~~~-----~~~~l~i~G~~~~-~-~~~~~~~~~~~~~~~~v~~~-G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~l 262 (335)
T cd03802 191 RAARR-----AGIPLKLAGPVSD-P-DYFYREIAPELLDGPDIEYL-GEVGGAEKAELLGNARALLFPILWEEPFGLVMI 262 (335)
T ss_pred HHHHh-----cCCeEEEEeCCCC-H-HHHHHHHHHhcccCCcEEEe-CCCCHHHHHHHHHhCcEEEeCCcccCCcchHHH
Confidence 66543 4688888776532 1 2222222222 2357666 442 346789999999999876 44556
Q ss_pred HHHHcCCCEEEEEcCChHHHHH
Q 016179 333 ELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 333 Ea~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|||++|+|+|. ...+.....+
T Consensus 263 EAma~G~PvI~-~~~~~~~e~i 283 (335)
T cd03802 263 EAMACGTPVIA-FRRGAVPEVV 283 (335)
T ss_pred HHHhcCCCEEE-eCCCCchhhe
Confidence 99999999886 5555555444
No 74
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.20 E-value=7.4e-09 Score=101.06 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=95.1
Q ss_pred HHhhhheeecCcccHHHH-HhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCc
Q 016179 172 AAFVDHILCILPNEEAIC-RLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSR 250 (394)
Q Consensus 172 ~~~~d~v~~~~p~~~~~~-~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSr 250 (394)
.+.+|.+++.++..++.+ ..+|.+..++.|++..... ..+.+.+++++++++. .++.+ |..
T Consensus 141 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~ngv~~~~~----------------~~~~~~~~~~~~~~~~-~i~~~-G~~ 202 (363)
T cd04955 141 VKFADRLIADSPGIKEYLKEKYGRDSTYIPYGADHVVS----------------SEEDEILKKYGLEPGR-YYLLV-GRI 202 (363)
T ss_pred HhhccEEEeCCHHHHHHHHHhcCCCCeeeCCCcChhhc----------------chhhhhHHhcCCCCCc-EEEEE-ecc
Confidence 567899999999999888 5667666677776643221 0112344566665543 45554 433
Q ss_pred HHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcC--hHHHHHHHhhcCCCCEEEecCCC-cchHHHHHHHcccceehh
Q 016179 251 LQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--VENYITGLIQKWPVPSILVPGGS-SNLKYDAFSASRVALCTS 327 (394)
Q Consensus 251 g~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~--~~~~l~~~~~~~~~~v~~~~g~~-~~~~~~~~~~ADl~I~~S 327 (394)
. +.+ ....++++++.+.. ++++++++++... +.+.+.+.. ....++.+. |+. .+++.++++.||+++..|
T Consensus 203 ~-~~K-g~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~~~-~~~~~V~~~-g~~~~~~~~~~~~~ad~~v~ps 275 (363)
T cd04955 203 V-PEN-NIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKEKA-AADPRIIFV-GPIYDQELLELLRYAALFYLHG 275 (363)
T ss_pred c-ccC-CHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHHHh-CCCCcEEEc-cccChHHHHHHHHhCCEEEeCC
Confidence 2 333 35678888887743 6888888875221 222222111 122256665 432 456889999999999877
Q ss_pred ------hHHHHHHHHcCCCEEEEEcCChH
Q 016179 328 ------GTVAVELQLARLPCVVAYRAHFL 350 (394)
Q Consensus 328 ------Gt~tlEa~a~G~P~Iv~y~~~~~ 350 (394)
|.+.+||+++|+|+|.. +.+..
T Consensus 276 ~~~e~~~~~~~EAma~G~PvI~s-~~~~~ 303 (363)
T cd04955 276 HSVGGTNPSLLEAMAYGCPVLAS-DNPFN 303 (363)
T ss_pred ccCCCCChHHHHHHHcCCCEEEe-cCCcc
Confidence 34556999999998864 44433
No 75
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.19 E-value=1.6e-09 Score=110.83 Aligned_cols=222 Identities=12% Similarity=-0.011 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC-CchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchH-HHH---H----
Q 016179 101 FRVRLKETIEAALLFRPHAVVTVDSK-GFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEAR-LKN---L---- 171 (394)
Q Consensus 101 ~~~~~~~~~~~i~~~~PD~Vi~~~~~-~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r-~~~---l---- 171 (394)
+...+.++..++++++||+|++..+. .+-..+++++. ++|++++-. +..+ .....+ ..+ +
T Consensus 265 ~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~la--------gvpviv~~~-h~~~--~~~~~r~~~~e~~~~~~a 333 (578)
T PRK15490 265 CKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIA--------GVPRIQLGL-RGLP--PVVRKRLFKPEYEPLYQA 333 (578)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhc--------CCCEEEEee-cccC--CcchhhHHHHHHHHhhhh
Confidence 45568889999999999999987632 12233444432 688755521 2111 000001 111 1
Q ss_pred ---HHhhhheeecCcccHHHHHh-cCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHh--hcCCCCCCcE
Q 016179 172 ---AAFVDHILCILPNEEAICRL-NGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKN--KYSVPSGATV 242 (394)
Q Consensus 172 ---~~~~d~v~~~~p~~~~~~~~-~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--~lgl~~~~~~ 242 (394)
.+.+| +++.+....+.+.+ .+++ +.++-|.+.... |.+. .....+.++ ..+++++.++
T Consensus 334 ~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~r--f~p~----------~~~~~~~r~~~~~~l~~~~~v 400 (578)
T PRK15490 334 LAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPS--TEPS----------SEVPHKIWQQFTQKTQDADTT 400 (578)
T ss_pred ceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhh--cCcc----------chhhHHHHHHhhhccCCCCcE
Confidence 22333 34445544555543 3554 455555553321 1110 001112333 3355556666
Q ss_pred EEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCCcchHHHHHHHc
Q 016179 243 ISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSAS 320 (394)
Q Consensus 243 IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~~~~~~~~~~~A 320 (394)
|+.++ |-...+. ...+++++..+.+..|++++++++++. .++.+++...+.+. ++.+. |+ .+|++++|+.|
T Consensus 401 Ig~Vg--Rl~~~Kg-~~~LI~A~a~llk~~pdirLvIVGdG~--~~eeLk~la~elgL~d~V~Fl-G~-~~Dv~~~LaaA 473 (578)
T PRK15490 401 IGGVF--RFVGDKN-PFAWIDFAARYLQHHPATRFVLVGDGD--LRAEAQKRAEQLGILERILFV-GA-SRDVGYWLQKM 473 (578)
T ss_pred EEEEE--EEehhcC-HHHHHHHHHHHHhHCCCeEEEEEeCch--hHHHHHHHHHHcCCCCcEEEC-CC-hhhHHHHHHhC
Confidence 66543 3322333 456777887777667899999988763 23456666555443 46666 55 68999999999
Q ss_pred ccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 321 RVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 321 Dl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|++|..| |.+.+|||++|+|+|. ++.+.....+
T Consensus 474 DVfVlPS~~EGfp~vlLEAMA~GlPVVA-TdvGG~~EiV 511 (578)
T PRK15490 474 NVFILFSRYEGLPNVLIEAQMVGVPVIS-TPAGGSAECF 511 (578)
T ss_pred CEEEEcccccCccHHHHHHHHhCCCEEE-eCCCCcHHHc
Confidence 9999987 5566799999999885 5666555544
No 76
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.16 E-value=3.9e-09 Score=102.43 Aligned_cols=272 Identities=11% Similarity=-0.018 Sum_probs=144.4
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHHHHhcCCCEE
Q 016179 41 VSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAV 120 (394)
Q Consensus 41 ~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~i~~~~PD~V 120 (394)
+|...++..++++|.+.... +.++............... ............. ..............++..+||++
T Consensus 15 gG~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dii 89 (365)
T cd03809 15 TGIGRYARELLRALLKLDPE-EVLLLLPGAPGLLLLPLRA-ALRLLLRLPRRLL---WGLLFLLRAGDRLLLLLLGLDLL 89 (365)
T ss_pred CcHHHHHHHHHHHHHhcCCc-eEEEEecCccccccccchh-ccccccccccccc---cchhhHHHHHHHHHhhhcCCCee
Confidence 34466789999999987664 6655443221111000000 0000000000000 11122222333445556899999
Q ss_pred EEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCcccccc-----Cc------chHHHHHHHhhhheeecCcccHHHH
Q 016179 121 VTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWK-----GG------EARLKNLAAFVDHILCILPNEEAIC 189 (394)
Q Consensus 121 i~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~-----~g------~~r~~~l~~~~d~v~~~~p~~~~~~ 189 (394)
++.+...+.. +.. ++|++++. +..|.+. .. .....++.+.+|.+++.++..++.+
T Consensus 90 ~~~~~~~~~~------~~~------~~~~i~~~--hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~ 155 (365)
T cd03809 90 HSPHNTAPLL------RLR------GVPVVVTI--HDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDL 155 (365)
T ss_pred eecccccCcc------cCC------CCCEEEEe--ccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHH
Confidence 9876322221 111 57754432 2222110 00 0011234677999999999988887
Q ss_pred Hhc-CC---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHH
Q 016179 190 RLN-GL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTV 265 (394)
Q Consensus 190 ~~~-g~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~ 265 (394)
.+. +. ++.++.|++...... ...... +.+...+++.++|+.+| +... .+....+++++
T Consensus 156 ~~~~~~~~~~~~vi~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~i~~~G-~~~~--~K~~~~~l~~~ 217 (365)
T cd03809 156 LRYLGVPPDKIVVIPLGVDPRFRP--------------PPAEAE-VLRALYLLPRPYFLYVG-TIEP--RKNLERLLEAF 217 (365)
T ss_pred HHHhCcCHHHEEeeccccCccccC--------------CCchHH-HHHHhcCCCCCeEEEeC-CCcc--ccCHHHHHHHH
Confidence 653 32 356777776544321 011111 33444555666666654 4432 23467788999
Q ss_pred HHhhhhCCCeEEEEEeCCCcChHHHHHHHhhc--CCCCEEEecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcC
Q 016179 266 ELLKDSFPELITVIHVAPNRHVENYITGLIQK--WPVPSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLAR 338 (394)
Q Consensus 266 ~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~--~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G 338 (394)
..+.+..+++++++.+.......... ..... ...++++......+++.++|+.||+++..| |...+||+++|
T Consensus 218 ~~~~~~~~~~~l~i~G~~~~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G 296 (365)
T cd03809 218 ARLPAKGPDPKLVIVGKRGWLNEELL-ARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACG 296 (365)
T ss_pred HHHHHhcCCCCEEEecCCccccHHHH-HHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCC
Confidence 99887766788888876543322222 21112 222466553321467899999999999887 34556999999
Q ss_pred CCEEEEEcCChHH
Q 016179 339 LPCVVAYRAHFLT 351 (394)
Q Consensus 339 ~P~Iv~y~~~~~~ 351 (394)
+|+|. .+.+...
T Consensus 297 ~pvI~-~~~~~~~ 308 (365)
T cd03809 297 TPVIA-SNISSLP 308 (365)
T ss_pred CcEEe-cCCCCcc
Confidence 99876 4554443
No 77
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.16 E-value=5.2e-12 Score=111.23 Aligned_cols=97 Identities=13% Similarity=0.187 Sum_probs=64.9
Q ss_pred EEEEECCCcHHH-HHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHc
Q 016179 242 VISLLPGSRLQE-VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 320 (394)
Q Consensus 242 ~IlllgGSrg~e-i~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~A 320 (394)
||+++|||.|+. +++.+..+++ .+....++.++++++|++ .+++. .......+.++.++.+ .++|.++|+.|
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~---~~~~~~~~~~viv~~G~~-~~~~~-~~~~~~~~~~v~~~~~--~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILE---LLAEKHKNIQVIVQTGKN-NYEEL-KIKVENFNPNVKVFGF--VDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHH---HHHHHHHHCCCCCCCTTC-ECHHH-CCCHCCTTCCCEEECS--SSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHH---HHhhcCCCcEEEEEECCC-cHHHH-HHHHhccCCcEEEEec--hhhHHHHHHHc
Confidence 689999999985 6665443333 332222357889999986 33332 2223333346777754 57899999999
Q ss_pred ccceehhhHHHH-HHHHcCCCEEEEE
Q 016179 321 RVALCTSGTVAV-ELQLARLPCVVAY 345 (394)
Q Consensus 321 Dl~I~~SGt~tl-Ea~a~G~P~Iv~y 345 (394)
|++||++|+.|+ |++++|+|+|++.
T Consensus 74 DlvIs~aG~~Ti~E~l~~g~P~I~ip 99 (167)
T PF04101_consen 74 DLVISHAGAGTIAEALALGKPAIVIP 99 (167)
T ss_dssp SEEEECS-CHHHHHHHHCT--EEEE-
T ss_pred CEEEeCCCccHHHHHHHcCCCeeccC
Confidence 999999999887 9999999999873
No 78
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.16 E-value=4e-09 Score=106.17 Aligned_cols=252 Identities=14% Similarity=0.017 Sum_probs=143.4
Q ss_pred HHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccC---cchHHHHHHHhhhheeecCccc
Q 016179 109 IEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKG---GEARLKNLAAFVDHILCILPNE 185 (394)
Q Consensus 109 ~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~---g~~r~~~l~~~~d~v~~~~p~~ 185 (394)
.+.+++.+||+|++. + +.+...+..+++.+.. +.|+++.++...++.... ......++.+.+|.+++.++..
T Consensus 111 ~~~~~~~~~diihaH-~-~~~~~~~~~~~~~~~~---~~~~~~t~Hg~d~~~~~~~~~~~~~~~~~~~~ad~vv~~S~~~ 185 (406)
T PRK15427 111 AQVATPFVADVFIAH-F-GPAGVTAAKLRELGVL---RGKIATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLPISDLW 185 (406)
T ss_pred hhhhccCCCCEEEEc-C-ChHHHHHHHHHHhCCC---CCCeEEEEcccccccchhhhhhhHHHHHHHHhCCEEEECCHHH
Confidence 344567789999974 3 2344445555442111 223333333333321100 0002234556799999999999
Q ss_pred HHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHH
Q 016179 186 EAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFA 262 (394)
Q Consensus 186 ~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll 262 (394)
++.+.+.|++ +.++.|.+..... .+ ..+ . .+.+...|+.+ |.. .+- +.+..++
T Consensus 186 ~~~l~~~g~~~~ki~vi~nGvd~~~f--~~------------~~~----~---~~~~~~~il~v-Grl-~~~-Kg~~~ll 241 (406)
T PRK15427 186 AGRLQKMGCPPEKIAVSRMGVDMTRF--SP------------RPV----K---APATPLEIISV-ARL-TEK-KGLHVAI 241 (406)
T ss_pred HHHHHHcCCCHHHEEEcCCCCCHHHc--CC------------Ccc----c---cCCCCeEEEEE-eCc-chh-cCHHHHH
Confidence 9888877764 5566665533221 10 000 0 01223345544 433 333 3467899
Q ss_pred HHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCC-cchHHHHHHHcccceehh-----------h
Q 016179 263 KTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSASRVALCTS-----------G 328 (394)
Q Consensus 263 ~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~-~~~~~~~~~~ADl~I~~S-----------G 328 (394)
++++.+.++.+++++++++++. .++.+++..++.+. ++.+. |+. .+++.++|+.||++|..| |
T Consensus 242 ~a~~~l~~~~~~~~l~ivG~G~--~~~~l~~~~~~~~l~~~V~~~-G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p 318 (406)
T PRK15427 242 EACRQLKEQGVAFRYRILGIGP--WERRLRTLIEQYQLEDVVEMP-GFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIP 318 (406)
T ss_pred HHHHHHHhhCCCEEEEEEECch--hHHHHHHHHHHcCCCCeEEEe-CCCCHHHHHHHHHhCCEEEECCccCCCCCccCcc
Confidence 9999998777889999888763 24456666665554 36555 442 467999999999999876 2
Q ss_pred HHHHHHHHcCCCEEEEEcCChHHHHHHH----hhcc-CCccchhh----hhc-CCCC-------cccccCCCCCHHHHHH
Q 016179 329 TVAVELQLARLPCVVAYRAHFLTEWFIR----YKAK-IPYISLPN----ILL-DSPI-------IPEALLQACTPDTLTH 391 (394)
Q Consensus 329 t~tlEa~a~G~P~Iv~y~~~~~~~~~a~----~~vk-~~~~~l~N----il~-~~~i-------~pEliq~~~~~~~i~~ 391 (394)
.+.+|||++|+|+|. ...+.+...+.. .++. .+.-++.+ ++. +.+. .-+.++++++++.+++
T Consensus 319 ~~llEAma~G~PVI~-t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~ 397 (406)
T PRK15427 319 VALMEAMAVGIPVVS-TLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINR 397 (406)
T ss_pred HHHHHHHhCCCCEEE-eCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 345699999999876 566666655521 2332 12223332 333 3322 2235556677777766
Q ss_pred Hh
Q 016179 392 LL 393 (394)
Q Consensus 392 ~~ 393 (394)
.+
T Consensus 398 ~l 399 (406)
T PRK15427 398 EL 399 (406)
T ss_pred HH
Confidence 54
No 79
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.14 E-value=9.7e-09 Score=96.47 Aligned_cols=269 Identities=16% Similarity=0.189 Sum_probs=152.2
Q ss_pred ceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEE--ecC--hhhHhccCccccccCcceeccHHHhhh-hHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSG--VGG--SMMSEQGMKSLFPMEDIAVMGIWELLP-HIYKFRVRL 105 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g--~gg--~~m~~~g~~~~~~~~~l~~~G~~~~l~-~~~~~~~~~ 105 (394)
|||+|=.+. +-|.+ ...+..+|++++.+ +-+.. .|+ +-++.-|++. ..+.-.|.. .++ ++-......
T Consensus 1 mkVwiDI~n-~~hvhfFk~lI~elekkG~e-v~iT~rd~~~v~~LLd~ygf~~----~~Igk~g~~-tl~~Kl~~~~eR~ 73 (346)
T COG1817 1 MKVWIDIGN-PPHVHFFKNLIWELEKKGHE-VLITCRDFGVVTELLDLYGFPY----KSIGKHGGV-TLKEKLLESAERV 73 (346)
T ss_pred CeEEEEcCC-cchhhHHHHHHHHHHhCCeE-EEEEEeecCcHHHHHHHhCCCe----EeecccCCc-cHHHHHHHHHHHH
Confidence 566665443 35666 68899999998654 44332 222 3344445542 222211211 111 222233445
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHH-HHhhhheeecCcc
Q 016179 106 KETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNL-AAFVDHILCILPN 184 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l-~~~~d~v~~~~p~ 184 (394)
..+.+++.+++||+.+..++|. ..+++..| ++|.+ .++.+.. +- -.|++ .++||.+++....
T Consensus 74 ~~L~ki~~~~kpdv~i~~~s~~-l~rvafgL---------g~psI-i~~D~eh-A~-----~qnkl~~Pla~~ii~P~~~ 136 (346)
T COG1817 74 YKLSKIIAEFKPDVAIGKHSPE-LPRVAFGL---------GIPSI-IFVDNEH-AE-----AQNKLTLPLADVIITPEAI 136 (346)
T ss_pred HHHHHHHhhcCCceEeecCCcc-hhhHHhhc---------CCceE-EecCChh-HH-----HHhhcchhhhhheeccccc
Confidence 5678899999999999877552 23343332 68864 3433211 11 23454 8899998877666
Q ss_pred cHHHHHhcCC-CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHH---HhhHHH
Q 016179 185 EEAICRLNGL-AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEV---ARMLPI 260 (394)
Q Consensus 185 ~~~~~~~~g~-~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei---~~~l~~ 260 (394)
....+...|. +..++|.+-..+..+... -...+++.+++|+.++.+.|++=|=|-++.. .+....
T Consensus 137 ~~~~~~~~G~~p~~i~~~~giae~~~v~~-----------f~pd~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~ 205 (346)
T COG1817 137 DEEELLDFGADPNKISGYNGIAELANVYG-----------FVPDPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISV 205 (346)
T ss_pred chHHHHHhCCCccceecccceeEEeeccc-----------CCCCHHHHHHcCCCCCCceEEEeeccccceeeccccchhh
Confidence 6666666665 456677664433322110 0123578889999998888998777766521 111222
Q ss_pred HHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCC
Q 016179 261 FAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLP 340 (394)
Q Consensus 261 ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P 340 (394)
+.+.++.|.+ .+ .++++. +.. .++..+++. ..+.+.. ..|--.++-.||++|+.+||+.-||+++|+|
T Consensus 206 ~~~li~~l~k-~g--iV~ipr--~~~----~~eife~~~--n~i~pk~-~vD~l~Llyya~lvig~ggTMarEaAlLGtp 273 (346)
T COG1817 206 LPDLIKELKK-YG--IVLIPR--EKE----QAEIFEGYR--NIIIPKK-AVDTLSLLYYATLVIGAGGTMAREAALLGTP 273 (346)
T ss_pred HHHHHHHHHh-Cc--EEEecC--chh----HHHHHhhhc--cccCCcc-cccHHHHHhhhheeecCCchHHHHHHHhCCc
Confidence 3345555543 22 333332 221 223334332 2222221 1233458889999999999999999999999
Q ss_pred EEEEEcC
Q 016179 341 CVVAYRA 347 (394)
Q Consensus 341 ~Iv~y~~ 347 (394)
+|.+|+.
T Consensus 274 aIs~~pG 280 (346)
T COG1817 274 AISCYPG 280 (346)
T ss_pred eEEecCC
Confidence 9999965
No 80
>PLN02939 transferase, transferring glycosyl groups
Probab=99.13 E-value=1.8e-08 Score=108.44 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=81.8
Q ss_pred ChHHHHhhcCCCC---CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCC-cChHHHHHHHhhcCCC-
Q 016179 226 NSEDFKNKYSVPS---GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN-RHVENYITGLIQKWPV- 300 (394)
Q Consensus 226 ~~~~~r~~lgl~~---~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~-~~~~~~l~~~~~~~~~- 300 (394)
.+..+++++|+++ +.|+|+++ ||-.+-|. +..+++++..+.+ +++++++++.+. ..+++.++.+...++.
T Consensus 762 nK~aLRkelGL~~~d~d~pLIg~V--GRL~~QKG-iDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~ 836 (977)
T PLN02939 762 NKAALRKQLGLSSADASQPLVGCI--TRLVPQKG-VHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSN 836 (977)
T ss_pred hhHHHHHHhCCCcccccceEEEEe--ecCCcccC-hHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCC
Confidence 4667889999985 45777776 46554443 5678888887754 478998888652 2233445555454433
Q ss_pred -CEEEecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHH
Q 016179 301 -PSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 301 -~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
++.++.++.....+.+|++||++|..| |.+.+|||++|+|.|+ .+++++.
T Consensus 837 drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVV-s~vGGL~ 892 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIV-RKTGGLN 892 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEE-ecCCCCc
Confidence 476664431122468999999999998 7788899999999886 5555543
No 81
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.13 E-value=8.2e-09 Score=104.36 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=96.4
Q ss_pred HHhhhheeecCcccHHHHHhc-CC--CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECC
Q 016179 172 AAFVDHILCILPNEEAICRLN-GL--AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 248 (394)
Q Consensus 172 ~~~~d~v~~~~p~~~~~~~~~-g~--~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgG 248 (394)
.+.+|.+++.+++.++.+.+. +. ++.++-+|+.... +.+ ... ...++.++|+.+|
T Consensus 187 ~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~--~~~------------~~~-------~~~~~~~~il~vg- 244 (419)
T cd03806 187 GSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEE--LLK------------LPL-------DEKTRENQILSIA- 244 (419)
T ss_pred hhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHH--hcc------------ccc-------ccccCCcEEEEEE-
Confidence 567899999999999888664 33 4556656653211 110 000 0123445666653
Q ss_pred CcHHHHHhhHHHHHHHHHHhhhhCC-----CeEEEEEeCCCc----ChHHHHHHHhhcCCC--CEEEecCCCcchHHHHH
Q 016179 249 SRLQEVARMLPIFAKTVELLKDSFP-----ELITVIHVAPNR----HVENYITGLIQKWPV--PSILVPGGSSNLKYDAF 317 (394)
Q Consensus 249 Srg~ei~~~l~~ll~a~~~l~~~~~-----~~~~vi~~g~~~----~~~~~l~~~~~~~~~--~v~~~~g~~~~~~~~~~ 317 (394)
|-.. ++.+..+++++..+.+..| ++++++++++.. .+.+.++++.++.++ +++++.....+++.++|
T Consensus 245 -r~~~-~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l 322 (419)
T cd03806 245 -QFRP-EKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEEL 322 (419)
T ss_pred -eecC-CCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHH
Confidence 3222 3345678899998876654 489888886421 123445555554443 47666332247899999
Q ss_pred HHcccceehh-----hHHHHHHHHcCCCEEEEEcCCh
Q 016179 318 SASRVALCTS-----GTVAVELQLARLPCVVAYRAHF 349 (394)
Q Consensus 318 ~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~ 349 (394)
+.||++|..| |-+.+|+|++|+|+|...-.++
T Consensus 323 ~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp 359 (419)
T cd03806 323 STASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP 359 (419)
T ss_pred HhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCC
Confidence 9999999877 6666799999999886433343
No 82
>PRK14098 glycogen synthase; Provisional
Probab=99.13 E-value=7.2e-09 Score=106.73 Aligned_cols=118 Identities=11% Similarity=0.130 Sum_probs=82.9
Q ss_pred hHHHHhhcCCCC--CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEE
Q 016179 227 SEDFKNKYSVPS--GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSIL 304 (394)
Q Consensus 227 ~~~~r~~lgl~~--~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~ 304 (394)
+..+++++|++. +.++|+.+ +|-.+.| .+..+++++..+.+ +++++++++.+...+++.++++..+++.++.+
T Consensus 292 k~~l~~~lgl~~~~~~~~i~~v--gRl~~~K-G~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~ 366 (489)
T PRK14098 292 KKALLEEVGLPFDEETPLVGVI--INFDDFQ-GAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSV 366 (489)
T ss_pred HHHHHHHhCCCCccCCCEEEEe--ccccccC-cHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEE
Confidence 456778899974 45666665 3443333 36778899988865 47999998876433445566666655556777
Q ss_pred ecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChH
Q 016179 305 VPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFL 350 (394)
Q Consensus 305 ~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~ 350 (394)
..++..++++.+|++||+++..| |.+.+|||++|+|.|+ ..++++
T Consensus 367 ~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv-~~~GGl 416 (489)
T PRK14098 367 QTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVA-YAGGGI 416 (489)
T ss_pred EEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEE-ecCCCC
Confidence 65543345789999999999998 7777899999999886 444433
No 83
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.11 E-value=5.2e-09 Score=107.49 Aligned_cols=157 Identities=12% Similarity=0.133 Sum_probs=105.8
Q ss_pred HHhhhheeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECC
Q 016179 172 AAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 248 (394)
Q Consensus 172 ~~~~d~v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgG 248 (394)
.+.+|.+++.++..++.+.+.|++ +.++.|++..... .+ ... ...+++.++|+.+ |
T Consensus 242 ~~~ad~Ii~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f--~~------------~~~------~~~~~~~~~i~~v-G 300 (475)
T cd03813 242 YQAADRITTLYEGNRERQIEDGADPEKIRVIPNGIDPERF--AP------------ARR------ARPEKEPPVVGLI-G 300 (475)
T ss_pred HHhCCEEEecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHc--CC------------ccc------cccCCCCcEEEEE-e
Confidence 567999999999888877777764 5677777644321 11 000 0123455666665 3
Q ss_pred CcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc--ChHHHHHHHhhcCCC--CEEEecCCCcchHHHHHHHcccce
Q 016179 249 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR--HVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVAL 324 (394)
Q Consensus 249 Srg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~--~~~~~l~~~~~~~~~--~v~~~~g~~~~~~~~~~~~ADl~I 324 (394)
.-. ..+. +..++++++.+.++.|++++++++++.. .+.+.+++..++.++ ++++. | .+++.++|+.||++|
T Consensus 301 rl~-~~Kg-~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~-G--~~~v~~~l~~aDv~v 375 (475)
T cd03813 301 RVV-PIKD-IKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFT-G--FQNVKEYLPKLDVLV 375 (475)
T ss_pred ccc-cccC-HHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEc-C--CccHHHHHHhCCEEE
Confidence 332 3443 6778899999888788999998876522 233444555555443 56666 4 468999999999999
Q ss_pred ehh-----hHHHHHHHHcCCCEEEEEcCChHHHHHH
Q 016179 325 CTS-----GTVAVELQLARLPCVVAYRAHFLTEWFI 355 (394)
Q Consensus 325 ~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~a 355 (394)
..| |.+.+||+++|+|+|. .+.+.....+.
T Consensus 376 lpS~~Eg~p~~vlEAma~G~PVVa-td~g~~~elv~ 410 (475)
T cd03813 376 LTSISEGQPLVILEAMAAGIPVVA-TDVGSCRELIE 410 (475)
T ss_pred eCchhhcCChHHHHHHHcCCCEEE-CCCCChHHHhc
Confidence 988 5566799999999886 56666655543
No 84
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=99.08 E-value=8.4e-10 Score=97.57 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHH-HHHHHHhccccCCCCCe---EEEee-cCccccccCcchHHHHHHHhhhhee
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRL-LKQLRARYSHERLNGPA---HFHYV-APSFWAWKGGEARLKNLAAFVDHIL 179 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~l-a~~l~~~~~~~~~~ip~---~~~yv-~~~~wa~~~g~~r~~~l~~~~d~v~ 179 (394)
.+++.++|++++||+||+| +| |+..+ ...+++++.. .++|+ ++||. .|..|.++ .+|+++
T Consensus 78 ~~~l~~~l~~~~PD~IIsT-hp-~~~~~~l~~lk~~~~~--~~~p~~tvvTD~~~~H~~W~~~-----------~~D~y~ 142 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIIST-HP-FPAQVPLSRLKRRGRL--PNIPVVTVVTDFDTVHPFWIHP-----------GVDRYF 142 (169)
T ss_pred HHHHHHHHhhcCCCEEEEC-Cc-chhhhHHHHHHHhhcc--cCCcEEEEEcCCCCCCcCeecC-----------CCCEEE
Confidence 4578899999999999998 44 55566 6667666432 14563 67885 58889774 499999
Q ss_pred ecCcccHHHHHhcCCC---eEEEcCCC
Q 016179 180 CILPNEEAICRLNGLA---ATFVGHPV 203 (394)
Q Consensus 180 ~~~p~~~~~~~~~g~~---~~~vG~Pv 203 (394)
|.+++.++.+.++|++ +.++|+|+
T Consensus 143 Vase~~~~~l~~~Gi~~~~I~vtGiPV 169 (169)
T PF06925_consen 143 VASEEVKEELIERGIPPERIHVTGIPV 169 (169)
T ss_pred ECCHHHHHHHHHcCCChhHEEEeCccC
Confidence 9999999999999987 88999996
No 85
>PLN02949 transferase, transferring glycosyl groups
Probab=99.04 E-value=1.1e-07 Score=97.26 Aligned_cols=152 Identities=9% Similarity=-0.039 Sum_probs=95.2
Q ss_pred HhhhheeecCcccHHHHHhc-CC--CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCC
Q 016179 173 AFVDHILCILPNEEAICRLN-GL--AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGS 249 (394)
Q Consensus 173 ~~~d~v~~~~p~~~~~~~~~-g~--~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGS 249 (394)
+.+|.+++.+++.++.+.+. +. ++.++-+|+.... +.. .. ..-+++.+.++.+|
T Consensus 219 ~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~--~~~------------~~-------~~~~~~~~~il~vG-- 275 (463)
T PLN02949 219 RCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSG--LQA------------LP-------LERSEDPPYIISVA-- 275 (463)
T ss_pred CCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHH--ccc------------CC-------ccccCCCCEEEEEE--
Confidence 56899999999999887663 33 3455666653211 100 00 00123345666653
Q ss_pred cHHHHHhhHHHHHHHHHHhhhh----CCCeEEEEEeCCC----cChHHHHHHHhhcCCC--CEEEecCCCcchHHHHHHH
Q 016179 250 RLQEVARMLPIFAKTVELLKDS----FPELITVIHVAPN----RHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSA 319 (394)
Q Consensus 250 rg~ei~~~l~~ll~a~~~l~~~----~~~~~~vi~~g~~----~~~~~~l~~~~~~~~~--~v~~~~g~~~~~~~~~~~~ 319 (394)
|-.. ++....+++++..+.++ .++++++++++.. .++.+.+++...+.++ ++.++.....+++.++|+.
T Consensus 276 R~~~-~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~ 354 (463)
T PLN02949 276 QFRP-EKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGG 354 (463)
T ss_pred eeec-cCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHh
Confidence 3322 34567888888876542 3678998888742 1122335555555443 4766633224689999999
Q ss_pred cccceehh-----hHHHHHHHHcCCCEEEEEcCC
Q 016179 320 SRVALCTS-----GTVAVELQLARLPCVVAYRAH 348 (394)
Q Consensus 320 ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~ 348 (394)
||++|-.| |.+.+|||++|+|+|.....+
T Consensus 355 a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gG 388 (463)
T PLN02949 355 AVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAG 388 (463)
T ss_pred CcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCC
Confidence 99999877 777789999999988765444
No 86
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.04 E-value=2.9e-08 Score=99.96 Aligned_cols=146 Identities=7% Similarity=-0.024 Sum_probs=85.1
Q ss_pred hhheeecCcccHHHHHhc-C-CCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHH
Q 016179 175 VDHILCILPNEEAICRLN-G-LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQ 252 (394)
Q Consensus 175 ~d~v~~~~p~~~~~~~~~-g-~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ 252 (394)
++.+++.+...++.+.+. + .++.++.|++......+.+ .....+ .++++++|+.++.-...
T Consensus 191 ~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~~~-------------~~~~~~----~~~~~~~il~v~~~~~~ 253 (405)
T PRK10125 191 GCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILA-------------ELPPVR----ETQGKPKIAVVAHDLRY 253 (405)
T ss_pred CcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCcccccccc-------------cccccc----cCCCCCEEEEEEecccc
Confidence 467788888877766542 3 3467777776422111100 001111 13456667665421111
Q ss_pred HHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCC--cchHHHHHHHcccceehh---
Q 016179 253 EVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS--SNLKYDAFSASRVALCTS--- 327 (394)
Q Consensus 253 ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~--~~~~~~~~~~ADl~I~~S--- 327 (394)
+- +....+++++..+. +++++++++.+... . . .++..+ |+. ..++.++|++||++|..|
T Consensus 254 ~~-Kg~~~li~A~~~l~---~~~~L~ivG~g~~~--~--~-------~~v~~~-g~~~~~~~l~~~y~~aDvfV~pS~~E 317 (405)
T PRK10125 254 DG-KTDQQLVREMMALG---DKIELHTFGKFSPF--T--A-------GNVVNH-GFETDKRKLMSALNQMDALVFSSRVD 317 (405)
T ss_pred CC-ccHHHHHHHHHhCC---CCeEEEEEcCCCcc--c--c-------cceEEe-cCcCCHHHHHHHHHhCCEEEECCccc
Confidence 11 23456778877653 46888887754221 1 0 123333 221 356889999999999999
Q ss_pred --hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 328 --GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 328 --Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|.+.+|||+||+|+|. ++.+.+...+
T Consensus 318 gfp~vilEAmA~G~PVVa-t~~gG~~Eiv 345 (405)
T PRK10125 318 NYPLILCEALSIGVPVIA-THSDAAREVL 345 (405)
T ss_pred cCcCHHHHHHHcCCCEEE-eCCCChHHhE
Confidence 6677899999999875 6777776655
No 87
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.98 E-value=8.3e-08 Score=97.57 Aligned_cols=170 Identities=9% Similarity=0.037 Sum_probs=90.6
Q ss_pred HHHhhhheeecCcccH-HHHHhc-CC---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChH---HHHhhcCCCCCCcE
Q 016179 171 LAAFVDHILCILPNEE-AICRLN-GL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSE---DFKNKYSVPSGATV 242 (394)
Q Consensus 171 l~~~~d~v~~~~p~~~-~~~~~~-g~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~---~~r~~lgl~~~~~~ 242 (394)
..+.+|.+++.++.+. +.+..+ ++ ++.++.|-+..+. |.+... ..... ..+++++.+++.++
T Consensus 181 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~--f~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 250 (439)
T TIGR02472 181 TLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSR--FYPPQS--------SEETSEIDNLLAPFLKDPEKPP 250 (439)
T ss_pred HHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhh--cCCCCc--------cccchhHHHHHHhhccccCCcE
Confidence 4667899998876543 333332 33 3556655553321 211000 00111 12234556666776
Q ss_pred EEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcC---hHH-------HHHHHhhcCCC--CEEEecCCCc
Q 016179 243 ISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH---VEN-------YITGLIQKWPV--PSILVPGGSS 310 (394)
Q Consensus 243 IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~---~~~-------~l~~~~~~~~~--~v~~~~g~~~ 310 (394)
|+.+ | |-.+.| .+..+++|++.+.+..++.++++++|+..+ +++ .+.+...+.++ ++.+......
T Consensus 251 i~~v-G-rl~~~K-g~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~ 327 (439)
T TIGR02472 251 ILAI-S-RPDRRK-NIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRP 327 (439)
T ss_pred EEEE-c-CCcccC-CHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCH
Confidence 6666 3 443333 467888998764221122334333443221 111 11222333332 4555422115
Q ss_pred chHHHHHHHc----ccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 311 NLKYDAFSAS----RVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 311 ~~~~~~~~~A----Dl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
++++++|+.| |++|..| |.+.+|||+||+|+|. ...+.....+
T Consensus 328 ~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~-s~~gg~~eiv 379 (439)
T TIGR02472 328 DDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVA-TDDGGPRDII 379 (439)
T ss_pred HHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEE-eCCCCcHHHh
Confidence 7899999987 8999988 5666799999999876 5666666555
No 88
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.84 E-value=7.4e-07 Score=97.41 Aligned_cols=115 Identities=14% Similarity=0.134 Sum_probs=73.2
Q ss_pred hcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhh--CCCeEEEEEeCCCcCh----------HHHHHHHhhcCCC
Q 016179 233 KYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS--FPELITVIHVAPNRHV----------ENYITGLIQKWPV 300 (394)
Q Consensus 233 ~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~--~~~~~~vi~~g~~~~~----------~~~l~~~~~~~~~ 300 (394)
++..++++|+|+.+ +|-..- +.+..+++|+..+.+. .+++.+ +++++ ... ...+..+..++++
T Consensus 472 r~~~~pdkpvIL~V--GRL~p~-KGi~~LIeAf~~L~~l~~~~nL~L-IiG~g-dd~d~l~~~~~~~l~~L~~li~~lgL 546 (1050)
T TIGR02468 472 RFFTNPRKPMILAL--ARPDPK-KNITTLVKAFGECRPLRELANLTL-IMGNR-DDIDEMSSGSSSVLTSVLKLIDKYDL 546 (1050)
T ss_pred hhcccCCCcEEEEE--cCCccc-cCHHHHHHHHHHhHhhccCCCEEE-EEecC-chhhhhhccchHHHHHHHHHHHHhCC
Confidence 34457788888887 455443 4467889999988643 245653 33332 111 1123334444443
Q ss_pred --CEEEecCCC-cchHHHHHHHc----ccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 301 --PSILVPGGS-SNLKYDAFSAS----RVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 301 --~v~~~~g~~-~~~~~~~~~~A----Dl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
+|.+. |+. .++++++|+.| |++|..| |.+.+|||+||+|+|. ++.++....+
T Consensus 547 ~g~V~Fl-G~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA-SdvGG~~EII 610 (1050)
T TIGR02468 547 YGQVAYP-KHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA-TKNGGPVDIH 610 (1050)
T ss_pred CCeEEec-CCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE-eCCCCcHHHh
Confidence 35544 432 46899999988 6999988 7777899999999876 5666655554
No 89
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.76 E-value=1.9e-07 Score=93.54 Aligned_cols=149 Identities=15% Similarity=0.095 Sum_probs=89.7
Q ss_pred HHHhhhheeecCcccHHHHHhcC----CCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEE
Q 016179 171 LAAFVDHILCILPNEEAICRLNG----LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 246 (394)
Q Consensus 171 l~~~~d~v~~~~p~~~~~~~~~g----~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Illl 246 (394)
+.+.+|.+++.++.+++.+.+.+ .++.++.|.+..+.. .+ ... ....++++.++|+.+
T Consensus 169 ~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f--~~------------~~~----~~~~~~~~~~~ilf~ 230 (397)
T TIGR03087 169 IAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFF--SP------------DRD----YPNPYPPGKRVLVFT 230 (397)
T ss_pred HHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhc--CC------------Ccc----ccCCCCCCCcEEEEE
Confidence 46789999999999998886542 246677666643321 11 000 011123455666665
Q ss_pred CCCcHH--HHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccce
Q 016179 247 PGSRLQ--EVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVAL 324 (394)
Q Consensus 247 gGSrg~--ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I 324 (394)
|+... .+..++..+.+++..+.++.|++++++++++.. +.+++... ..++.+. |+ .+++..+|+.||++|
T Consensus 231 -G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~---~~~~~l~~--~~~V~~~-G~-v~~~~~~~~~adv~v 302 (397)
T TIGR03087 231 -GAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS---PAVRALAA--LPGVTVT-GS-VADVRPYLAHAAVAV 302 (397)
T ss_pred -EecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh---HHHHHhcc--CCCeEEe-ee-cCCHHHHHHhCCEEE
Confidence 44432 122222222245666666678999988876532 22333322 1257666 44 478999999999999
Q ss_pred ehh----hH--HHHHHHHcCCCEEEEE
Q 016179 325 CTS----GT--VAVELQLARLPCVVAY 345 (394)
Q Consensus 325 ~~S----Gt--~tlEa~a~G~P~Iv~y 345 (394)
..| |. ..+|||++|+|+|...
T Consensus 303 ~Ps~~~eG~~~~~lEAma~G~PVV~t~ 329 (397)
T TIGR03087 303 APLRIARGIQNKVLEAMAMAKPVVASP 329 (397)
T ss_pred ecccccCCcccHHHHHHHcCCCEEecC
Confidence 765 32 3569999999988753
No 90
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.76 E-value=2.7e-07 Score=90.39 Aligned_cols=142 Identities=17% Similarity=0.068 Sum_probs=89.0
Q ss_pred HHhhhheeecCcccHHHHHh-cCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCc
Q 016179 172 AAFVDHILCILPNEEAICRL-NGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSR 250 (394)
Q Consensus 172 ~~~~d~v~~~~p~~~~~~~~-~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSr 250 (394)
.+.+|.+++.++..++.+.+ .+.+..++-+|+..... .. . +...+.++.+ |..
T Consensus 151 ~~~~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~--~~-------------~----------~~~~~~il~~-G~~ 204 (351)
T cd03804 151 AARVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRF--TP-------------A----------EEKEDYYLSV-GRL 204 (351)
T ss_pred hcCCCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhc--Cc-------------C----------CCCCCEEEEE-EcC
Confidence 46789999999999888854 35566677666533211 10 0 0123445444 444
Q ss_pred HHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehh---
Q 016179 251 LQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS--- 327 (394)
Q Consensus 251 g~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S--- 327 (394)
. ..+ ....++++++.+ + .++++++.+. . .+.+++ ....++.++.....+++.++|++||+++..|
T Consensus 205 ~-~~K-~~~~li~a~~~~----~-~~l~ivG~g~-~-~~~l~~---~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~ 272 (351)
T cd03804 205 V-PYK-RIDLAIEAFNKL----G-KRLVVIGDGP-E-LDRLRA---KAGPNVTFLGRVSDEELRDLYARARAFLFPAEED 272 (351)
T ss_pred c-ccc-ChHHHHHHHHHC----C-CcEEEEECCh-h-HHHHHh---hcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCC
Confidence 3 233 356788887765 3 6788877653 2 233433 2233677764321345999999999999877
Q ss_pred -hHHHHHHHHcCCCEEEEEcCChHHH
Q 016179 328 -GTVAVELQLARLPCVVAYRAHFLTE 352 (394)
Q Consensus 328 -Gt~tlEa~a~G~P~Iv~y~~~~~~~ 352 (394)
|.+.+|+|++|+|+|.. ..+....
T Consensus 273 ~g~~~~Eama~G~Pvi~~-~~~~~~e 297 (351)
T cd03804 273 FGIVPVEAMASGTPVIAY-GKGGALE 297 (351)
T ss_pred CCchHHHHHHcCCCEEEe-CCCCCcc
Confidence 67778999999998864 4444443
No 91
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=4.9e-06 Score=81.95 Aligned_cols=275 Identities=13% Similarity=0.101 Sum_probs=152.4
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEec-Ch---hhHhccCccccccCcceeccHHHhhhhHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVG-GS---MMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKE 107 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~g-g~---~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~ 107 (394)
--|.|=|.+-|.=+-+..|+++|+++.|+ +.++-.. .+ +..++-+.. ........+ +. ...
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~-~~ilvTt~T~Tg~e~a~~~~~~---~v~h~YlP~-D~----------~~~ 114 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPD-LRILVTTMTPTGAERAAALFGD---SVIHQYLPL-DL----------PIA 114 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCC-CCEEEEecCccHHHHHHHHcCC---CeEEEecCc-Cc----------hHH
Confidence 34667666664444477899999999996 6654332 22 221111111 000001111 11 011
Q ss_pred HHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEee-----cCccccccCcchHHHHHHHhhhheeecC
Q 016179 108 TIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYV-----APSFWAWKGGEARLKNLAAFVDHILCIL 182 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv-----~~~~wa~~~g~~r~~~l~~~~d~v~~~~ 182 (394)
..+.++.++||++|.+-..-.|. +.-.++++ ++|.++-.- +-.-|..... ..+.+.+..|.+++-+
T Consensus 115 v~rFl~~~~P~l~Ii~EtElWPn-li~e~~~~------~~p~~LvNaRLS~rS~~~y~k~~~--~~~~~~~~i~li~aQs 185 (419)
T COG1519 115 VRRFLRKWRPKLLIIMETELWPN-LINELKRR------GIPLVLVNARLSDRSFARYAKLKF--LARLLFKNIDLILAQS 185 (419)
T ss_pred HHHHHHhcCCCEEEEEeccccHH-HHHHHHHc------CCCEEEEeeeechhhhHHHHHHHH--HHHHHHHhcceeeecC
Confidence 34667789999999885422232 23345444 789643210 1111333221 2344677789999999
Q ss_pred cccHHHHHhcCCC-eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHH
Q 016179 183 PNEEAICRLNGLA-ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIF 261 (394)
Q Consensus 183 p~~~~~~~~~g~~-~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~l 261 (394)
+..++.|.+-|.+ +.++||-=.|.-.. +. .....+..|.+++.+ ++++....-..| |- ...
T Consensus 186 e~D~~Rf~~LGa~~v~v~GNlKfd~~~~--~~---------~~~~~~~~r~~l~~~--r~v~iaaSTH~G-Ee----ei~ 247 (419)
T COG1519 186 EEDAQRFRSLGAKPVVVTGNLKFDIEPP--PQ---------LAAELAALRRQLGGH--RPVWVAASTHEG-EE----EII 247 (419)
T ss_pred HHHHHHHHhcCCcceEEecceeecCCCC--hh---------hHHHHHHHHHhcCCC--CceEEEecCCCc-hH----HHH
Confidence 9999999999985 78899842221100 00 001234566666543 566655433333 32 246
Q ss_pred HHHHHHhhhhCCCeEEEEE-eCCCcChHHHHHHHhhcCCC---------------CEEEecCCCcchHHHHHHHccccee
Q 016179 262 AKTVELLKDSFPELITVIH-VAPNRHVENYITGLIQKWPV---------------PSILVPGGSSNLKYDAFSASRVALC 325 (394)
Q Consensus 262 l~a~~~l~~~~~~~~~vi~-~g~~~~~~~~l~~~~~~~~~---------------~v~~~~g~~~~~~~~~~~~ADl~I~ 325 (394)
+++.+.|.+++|++.++++ -++ +.. +.+++.++..++ ++.+.+- --+|..+|+.||++..
T Consensus 248 l~~~~~l~~~~~~~llIlVPRHp-ERf-~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dt--mGEL~l~y~~adiAFV 323 (419)
T COG1519 248 LDAHQALKKQFPNLLLILVPRHP-ERF-KAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDT--MGELGLLYGIADIAFV 323 (419)
T ss_pred HHHHHHHHhhCCCceEEEecCCh-hhH-HHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEec--HhHHHHHHhhccEEEE
Confidence 6788888888888765544 332 222 334554443322 2333322 2478899999998765
Q ss_pred -h----hhHHH-HHHHHcCCCEEEEEcCChHHH
Q 016179 326 -T----SGTVA-VELQLARLPCVVAYRAHFLTE 352 (394)
Q Consensus 326 -~----SGt~t-lEa~a~G~P~Iv~y~~~~~~~ 352 (394)
- -|+=. +|.+++|+|+|.-.-+..++.
T Consensus 324 GGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~e 356 (419)
T COG1519 324 GGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSD 356 (419)
T ss_pred CCcccCCCCCChhhHHHcCCCEEeCCccccHHH
Confidence 2 25544 599999999887544444443
No 92
>PLN00142 sucrose synthase
Probab=98.67 E-value=3.4e-06 Score=90.43 Aligned_cols=120 Identities=15% Similarity=0.086 Sum_probs=76.8
Q ss_pred HhhcCC--CCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCC-Cc----ChH-----HHHHHHhhcC
Q 016179 231 KNKYSV--PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAP-NR----HVE-----NYITGLIQKW 298 (394)
Q Consensus 231 r~~lgl--~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~-~~----~~~-----~~l~~~~~~~ 298 (394)
++.+|+ ++++|+|+.+ +|-...| .+..+++++..+.+..+++++++++++ .. +.+ +.+.+...++
T Consensus 562 ~e~lg~l~~~~kpvIl~V--GRL~~~K-Gid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~l 638 (815)
T PLN00142 562 DEHIGYLKDRKKPIIFSM--ARLDRVK-NLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKY 638 (815)
T ss_pred HHHhCCccCCCCcEEEEE--ecCcccC-CHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHc
Confidence 345676 4566777776 4655444 467788999887665667999988875 11 111 1233344444
Q ss_pred CC--CEEEecCCC----cchHHHHHH-Hcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 299 PV--PSILVPGGS----SNLKYDAFS-ASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 299 ~~--~v~~~~g~~----~~~~~~~~~-~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
++ ++.++.... ..+++.+++ ++|++|..| |.+.+|||+||+|+|. ++.++....+
T Consensus 639 gL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVA-TdvGG~~EIV 705 (815)
T PLN00142 639 NLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-TCQGGPAEII 705 (815)
T ss_pred CCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEE-cCCCCHHHHh
Confidence 43 466543210 135666666 479999988 7777899999999875 6666666655
No 93
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.67 E-value=3e-06 Score=90.71 Aligned_cols=121 Identities=14% Similarity=0.128 Sum_probs=76.4
Q ss_pred HHHhhcCC--CCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc-------C---hHHHHHHHhh
Q 016179 229 DFKNKYSV--PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR-------H---VENYITGLIQ 296 (394)
Q Consensus 229 ~~r~~lgl--~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~-------~---~~~~l~~~~~ 296 (394)
+.++.+|+ ++++|+|+.+ +|-.+.|. +..+++++..+....++.++++++|+.. + ..+.+.+...
T Consensus 537 ~~~~~~G~l~d~~kpiIl~V--GRL~~~KG-id~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~ 613 (784)
T TIGR02470 537 DNDEHYGYLKDPNKPIIFSM--ARLDRVKN-LTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLID 613 (784)
T ss_pred hHHHHhCCCCCCCCcEEEEE--eCCCccCC-HHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHH
Confidence 33466776 5678888877 56655554 6778888877654445688888887531 0 1122333444
Q ss_pred cCCC--CEEEecCCC--cchHHHHHH----Hcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 297 KWPV--PSILVPGGS--SNLKYDAFS----ASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 297 ~~~~--~v~~~~g~~--~~~~~~~~~----~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
++++ ++.++ |+. ..+..++++ ++|++|..| |-+.+|||+||+|+|. .+.+++...+
T Consensus 614 ~~gL~g~V~fl-G~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA-T~~GG~~EiV 682 (784)
T TIGR02470 614 QYQLHGQIRWI-GAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA-TRFGGPLEII 682 (784)
T ss_pred HhCCCCeEEEc-cCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE-cCCCCHHHHh
Confidence 4443 46655 321 234445554 357999988 7777899999999875 6666666655
No 94
>PHA01633 putative glycosyl transferase group 1
Probab=98.64 E-value=2.2e-06 Score=83.76 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=93.0
Q ss_pred hhheeecCcccHHHHHhcCCCeE---EEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCC-CCCcEEEEECCCc
Q 016179 175 VDHILCILPNEEAICRLNGLAAT---FVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVP-SGATVISLLPGSR 250 (394)
Q Consensus 175 ~d~v~~~~p~~~~~~~~~g~~~~---~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~-~~~~~IlllgGSr 250 (394)
-+.+++.+++.++.+.+.|++.. +.|. | +..|.+. ....++.+++++.+ ++.++++.+ ||
T Consensus 93 ~~~vIavS~~t~~~L~~~G~~~~i~I~~GV---D-~~~f~p~----------~~~~~~~r~~~~~~~~~~~~i~~v--GR 156 (335)
T PHA01633 93 DVKFIPNSKFSAENLQEVGLQVDLPVFHGI---N-FKIVENA----------EKLVPQLKQKLDKDFPDTIKFGIV--SG 156 (335)
T ss_pred CCEEEeCCHHHHHHHHHhCCCCceeeeCCC---C-hhhcCcc----------chhhHHHHHHhCcCCCCCeEEEEE--eC
Confidence 45788899999998888777522 2232 2 1112110 01124566666654 355566666 34
Q ss_pred HHHHHhhHHHHHHHHHHhhhhCCC----eEEEEEeCCCcChHHHHHHHhhcCCCCEEEec--CCC-cchHHHHHHHcccc
Q 016179 251 LQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPNRHVENYITGLIQKWPVPSILVP--GGS-SNLKYDAFSASRVA 323 (394)
Q Consensus 251 g~ei~~~l~~ll~a~~~l~~~~~~----~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~--g~~-~~~~~~~~~~ADl~ 323 (394)
..+- +....++++++.+.++.|+ +++++++. . .+++. ....+++++. |+. .+++.++|++||++
T Consensus 157 l~~~-KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~--~----~~~~l--~l~~~V~f~g~~G~~~~~dl~~~y~~aDif 227 (335)
T PHA01633 157 LTKR-KNMDLMLQVFNELNTKYPDIAKKIHFFVISH--K----QFTQL--EVPANVHFVAEFGHNSREYIFAFYGAMDFT 227 (335)
T ss_pred Cccc-cCHHHHHHHHHHHHHhCCCccccEEEEEEcH--H----HHHHc--CCCCcEEEEecCCCCCHHHHHHHHHhCCEE
Confidence 4433 3467899999998876664 46665532 1 12221 1223576653 221 46799999999999
Q ss_pred eehh-----hHHHHHHHHcCCCEEEEEcCChHH
Q 016179 324 LCTS-----GTVAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 324 I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
|..| |.+.+||+++|+|+|. ...+++.
T Consensus 228 V~PS~~EgfGlvlLEAMA~G~PVVa-s~~~~l~ 259 (335)
T PHA01633 228 IVPSGTEGFGMPVLESMAMGTPVIH-QLMPPLD 259 (335)
T ss_pred EECCccccCCHHHHHHHHcCCCEEE-ccCCCce
Confidence 9998 6677799999999775 5655544
No 95
>PHA01630 putative group 1 glycosyl transferase
Probab=98.63 E-value=7.5e-07 Score=87.28 Aligned_cols=148 Identities=13% Similarity=0.104 Sum_probs=94.0
Q ss_pred HHhhhheeecCcccHHHHHhcCC----CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEEC
Q 016179 172 AAFVDHILCILPNEEAICRLNGL----AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 247 (394)
Q Consensus 172 ~~~~d~v~~~~p~~~~~~~~~g~----~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Illlg 247 (394)
.+.+|.+++.++..++.+.+.|+ ++.++-|++..+.. .+ ... +.+.+.++.++
T Consensus 92 ~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f--~~------------~~~---------~~~~~~vl~~~ 148 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMF--EY------------KPK---------EKPHPCVLAIL 148 (331)
T ss_pred hccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHc--CC------------Ccc---------ccCCCEEEEEe
Confidence 56799999999999998877664 35666666643321 11 000 11234566666
Q ss_pred CCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehh
Q 016179 248 GSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS 327 (394)
Q Consensus 248 GSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S 327 (394)
|... + .+.+..++++++.+.++.+++++++++++..+ ..+ .........++ .+++.++|+.||+++..|
T Consensus 149 g~~~-~-~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~--~~l----~~~~~~~~~v~---~~~l~~~y~~aDv~v~pS 217 (331)
T PHA01630 149 PHSW-D-RKGGDIVVKIFHELQNEGYDFYFLIKSSNMLD--PRL----FGLNGVKTPLP---DDDIYSLFAGCDILFYPV 217 (331)
T ss_pred cccc-c-cCCHHHHHHHHHHHHhhCCCEEEEEEeCcccc--hhh----ccccceeccCC---HHHHHHHHHhCCEEEECC
Confidence 5443 2 23567899999998877778998888753221 111 11110000122 478999999999999988
Q ss_pred -----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 328 -----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 328 -----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
|.+.+|||+||+|+|.. ..++....+
T Consensus 218 ~~E~fgl~~lEAMA~G~PVIas-~~gg~~E~i 248 (331)
T PHA01630 218 RGGAFEIPVIEALALGLDVVVT-EKGAWSEWV 248 (331)
T ss_pred ccccCChHHHHHHHcCCCEEEe-CCCCchhhc
Confidence 55656999999998875 455554444
No 96
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.62 E-value=1.7e-06 Score=89.35 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=94.9
Q ss_pred HHhhhheeecCcccHHHHHh----cCC---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEE
Q 016179 172 AAFVDHILCILPNEEAICRL----NGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVIS 244 (394)
Q Consensus 172 ~~~~d~v~~~~p~~~~~~~~----~g~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Il 244 (394)
.+.+|.+++.+++.++.+.+ ++. ++.++.+.+.+.+.. ... ..+..+|+
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~-----------------~~~-------~r~~~~il 323 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQY-----------------PEQ-------ERKPFSII 323 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccC-----------------ccc-------ccCCeEEE
Confidence 55689999999987766543 221 244554433222110 000 11223444
Q ss_pred EECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCCcchHHHHHHHccc
Q 016179 245 LLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRV 322 (394)
Q Consensus 245 llgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~~~~~~~~~~~ADl 322 (394)
.+ | |-.+.| .+..+++|+..+.++.|++++++++.+. . .+.+++.+++.+. .+.+. |+ .++.++++.||+
T Consensus 324 ~v-G-rl~~~K-g~~~li~A~~~l~~~~p~~~l~i~G~G~-~-~~~l~~~i~~~~l~~~V~f~-G~--~~~~~~~~~adv 395 (500)
T TIGR02918 324 TA-S-RLAKEK-HIDWLVKAVVKAKKSVPELTFDIYGEGG-E-KQKLQKIINENQAQDYIHLK-GH--RNLSEVYKDYEL 395 (500)
T ss_pred EE-e-cccccc-CHHHHHHHHHHHHhhCCCeEEEEEECch-h-HHHHHHHHHHcCCCCeEEEc-CC--CCHHHHHHhCCE
Confidence 44 4 444444 4678999999998888999988887653 2 3456666655443 35544 54 479999999999
Q ss_pred ceehh-----hHHHHHHHHcCCCEEEEEcCC-hHHHHH
Q 016179 323 ALCTS-----GTVAVELQLARLPCVVAYRAH-FLTEWF 354 (394)
Q Consensus 323 ~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~-~~~~~~ 354 (394)
+|..| |.+.+||++||+|+|. +..+ +....+
T Consensus 396 ~v~pS~~Egfgl~~lEAma~G~PVI~-~dv~~G~~eiI 432 (500)
T TIGR02918 396 YLSASTSEGFGLTLMEAVGSGLGMIG-FDVNYGNPTFI 432 (500)
T ss_pred EEEcCccccccHHHHHHHHhCCCEEE-ecCCCCCHHHc
Confidence 99999 5666799999999886 5543 444444
No 97
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.62 E-value=1e-05 Score=72.72 Aligned_cols=85 Identities=25% Similarity=0.280 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhh--cCCCCEEEecCC-CcchHHHHHHHcccceehh-----hH
Q 016179 258 LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ--KWPVPSILVPGG-SSNLKYDAFSASRVALCTS-----GT 329 (394)
Q Consensus 258 l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~--~~~~~v~~~~g~-~~~~~~~~~~~ADl~I~~S-----Gt 329 (394)
...+++++..+.++.+++++++++..... ...+.... ....++.++... ..++...+++.||++++.| |+
T Consensus 119 ~~~~~~a~~~l~~~~~~~~~~i~G~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~ 196 (229)
T cd01635 119 LDDLIEAFALLKERGPDLKLVIAGDGPER--EYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGL 196 (229)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCCCh--HHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcCh
Confidence 45677888888877789999998876432 22222111 222357766442 1355666777799999999 66
Q ss_pred HHHHHHHcCCCEEEE
Q 016179 330 VAVELQLARLPCVVA 344 (394)
Q Consensus 330 ~tlEa~a~G~P~Iv~ 344 (394)
..+|++++|+|+|..
T Consensus 197 ~~~Eam~~g~pvi~s 211 (229)
T cd01635 197 VVLEAMACGLPVIAT 211 (229)
T ss_pred HHHHHHhCCCCEEEc
Confidence 667999999998864
No 98
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.61 E-value=1.7e-06 Score=87.09 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHH
Q 016179 236 VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYD 315 (394)
Q Consensus 236 l~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~ 315 (394)
++.|+|+|.+.=||-+.. .+++..+++++..+ +.++++.+++ .+ ... .....++.+... -...+
T Consensus 233 ~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l-----~~~vi~~~~~-~~--~~~----~~~p~n~~v~~~---~p~~~ 296 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA-VELLAIVLEALADL-----DVRVIVSLGG-AR--DTL----VNVPDNVIVADY---VPQLE 296 (406)
T ss_pred hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcC-----CcEEEEeccc-cc--ccc----ccCCCceEEecC---CCHHH
Confidence 567889999987887743 33344455554443 5778887775 22 111 122335655532 25678
Q ss_pred HHHHcccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 316 AFSASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 316 ~~~~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
++..||++|+=.|..|+ ||+.+|+|+|++ +...--+..|+++.
T Consensus 297 ~l~~ad~vI~hGG~gtt~eaL~~gvP~vv~-P~~~DQ~~nA~rve 340 (406)
T COG1819 297 LLPRADAVIHHGGAGTTSEALYAGVPLVVI-PDGADQPLNAERVE 340 (406)
T ss_pred HhhhcCEEEecCCcchHHHHHHcCCCEEEe-cCCcchhHHHHHHH
Confidence 99999999999998777 999999999974 54433333355443
No 99
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.54 E-value=1.8e-05 Score=72.96 Aligned_cols=198 Identities=15% Similarity=0.175 Sum_probs=108.5
Q ss_pred HhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHHhc
Q 016179 113 LLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLN 192 (394)
Q Consensus 113 ~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~~~ 192 (394)
.+.+||++|+.|.- ...++-.+|+++. + +.+++-..|.+ |+ +..|.+++..-+-.+.....
T Consensus 67 p~~~Pdl~I~aGrr--ta~l~~~lkk~~~----~-~~vVqI~~Prl----p~--------~~fDlvivp~HD~~~~~s~~ 127 (329)
T COG3660 67 PEQRPDLIITAGRR--TAPLAFYLKKKFG----G-IKVVQIQDPRL----PY--------NHFDLVIVPYHDWREELSDQ 127 (329)
T ss_pred ccCCCceEEecccc--hhHHHHHHHHhcC----C-ceEEEeeCCCC----Cc--------ccceEEeccchhhhhhhhcc
Confidence 34579999988742 4556667777653 4 44678666664 22 14688776654433332223
Q ss_pred CCCe-EEEc--CCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHH-HH-HhhHHHHHHHHHH
Q 016179 193 GLAA-TFVG--HPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQ-EV-ARMLPIFAKTVEL 267 (394)
Q Consensus 193 g~~~-~~vG--~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~-ei-~~~l~~ll~a~~~ 267 (394)
|-++ ..+| |++-+.+.. ..++.++..+.+ +...+-+++||+-++ .. .+-.-.+...+.+
T Consensus 128 ~~Nilpi~Gs~h~Vt~~~lA---------------a~~e~~~~~~p~-~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k 191 (329)
T COG3660 128 GPNILPINGSPHNVTSQRLA---------------ALREAFKHLLPL-PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVK 191 (329)
T ss_pred CCceeeccCCCCcccHHHhh---------------hhHHHHHhhCCC-CCceEEEEecCCCCCCccCHHHHHHHHHHHHH
Confidence 4443 3556 556554431 234444443322 233455667888775 11 1112223333333
Q ss_pred hhhhCCCeEEEEEeCCCcChHHHHHHHhhc-CC-CCEEEecCC--CcchHHHHHHHcccceehhhHHHH--HHHHcCCCE
Q 016179 268 LKDSFPELITVIHVAPNRHVENYITGLIQK-WP-VPSILVPGG--SSNLKYDAFSASRVALCTSGTVAV--ELQLARLPC 341 (394)
Q Consensus 268 l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~-~~-~~v~~~~g~--~~~~~~~~~~~ADl~I~~SGt~tl--Ea~a~G~P~ 341 (394)
..++ ....|++..... ..+.++..++. .. ....+.++. ..+.-.++|++||.+|+.+-..++ ||++.|+|+
T Consensus 192 ~l~~-~g~~~lisfSRR--Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEAasTgkPv 268 (329)
T COG3660 192 ILEN-QGGSFLISFSRR--TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEAASTGKPV 268 (329)
T ss_pred HHHh-CCceEEEEeecC--CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHHhccCCCe
Confidence 3322 356777766642 12233444333 11 123344321 124467899999999999987775 999999998
Q ss_pred EEEEcCC
Q 016179 342 VVAYRAH 348 (394)
Q Consensus 342 Iv~y~~~ 348 (394)
.+.+..+
T Consensus 269 ~~~~~~~ 275 (329)
T COG3660 269 FILEPPN 275 (329)
T ss_pred EEEecCC
Confidence 8765443
No 100
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.49 E-value=2.2e-05 Score=74.81 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=68.6
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcC-CCCEEEecCC-CcchHHHHHH
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW-PVPSILVPGG-SSNLKYDAFS 318 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~-~~~v~~~~g~-~~~~~~~~~~ 318 (394)
+.|++.|||++.+-.-..+.+.+.++.|.++ +.++++.+++++ ++..++..+.. ..++..+.+. ...+...+++
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~~e--~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~ 197 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLAR--GARVVLTGGPAE--RELAEEIAAALGGPRVVNLAGKTSLRELAALLA 197 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEechhh--HHHHHHHHHhcCCCccccCcCCCCHHHHHHHHH
Confidence 4688888888653222245677777777654 788888877642 23334433322 1122222221 1367889999
Q ss_pred Hcccceeh-hhHHHHHHHHcCCCEEEEEcCChHH
Q 016179 319 ASRVALCT-SGTVAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 319 ~ADl~I~~-SGt~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
.||++|+. ||++-+ |+++|+|+|.+|......
T Consensus 198 ~~~l~I~~Dsg~~Hl-A~a~~~p~i~l~g~~~~~ 230 (279)
T cd03789 198 RADLVVTNDSGPMHL-AAALGTPTVALFGPTDPA 230 (279)
T ss_pred hCCEEEeeCCHHHHH-HHHcCCCEEEEECCCCcc
Confidence 99999998 788777 579999999998765443
No 101
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=1.4e-05 Score=78.47 Aligned_cols=276 Identities=14% Similarity=0.093 Sum_probs=135.9
Q ss_pred CceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHH
Q 016179 31 ELRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETI 109 (394)
Q Consensus 31 ~~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~ 109 (394)
+|||+|+--+.=||+. +..+.+.|++..|+ +++..+..+.. ...++..-....+... .. +....-++...++.
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~-a~i~~~~~~~~-~~i~~~~p~I~~vi~~---~~-~~~~~~~~~~~~l~ 74 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPN-AKIDVLVPKGF-APILKLNPEIDKVIII---DK-KKKGLGLKERLALL 74 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCC-CEEEEEeccch-HHHHhcChHhhhhccc---cc-cccccchHHHHHHH
Confidence 4789999888889999 89999999999997 88776664321 1111110000001000 00 00001233455577
Q ss_pred HHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHH
Q 016179 110 EAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAIC 189 (394)
Q Consensus 110 ~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~ 189 (394)
+.+++.+.|+|+-... .+...+...+. ++|.-+-|...+ .+.. ..+.. ... +..+......
T Consensus 75 ~~lr~~~yD~vidl~~-~~ksa~l~~~~--------~~~~r~g~~~~~---~r~~--~~~~~---~~~--~~~~~~~~~~ 135 (334)
T COG0859 75 RTLRKERYDAVIDLQG-LLKSALLALLL--------GIPFRIGFDKKS---AREL--LLNKF---YPR--LDKPEGQHVV 135 (334)
T ss_pred HHhhccCCCEEEECcc-cHHHHHHHHHh--------CCCccccccccc---chhH--HHHHh---hhc--cCcccchhHH
Confidence 8888889999996532 22222222211 345322221111 1110 11111 111 1122211111
Q ss_pred HhcCCCeEEEcCCCch-hhhhhcCCCCCCCcccccCCChHHHHhhcCCCCC-CcEEEEECC-CcHHHHHh-hHHHHHHHH
Q 016179 190 RLNGLAATFVGHPVVE-DCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSG-ATVISLLPG-SRLQEVAR-MLPIFAKTV 265 (394)
Q Consensus 190 ~~~g~~~~~vG~Pv~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~-~~~IlllgG-Srg~ei~~-~l~~ll~a~ 265 (394)
+++.--....|.+..+ ....+. .+....+.... +... +|.|++.|| |++.. ++ -...+.+.+
T Consensus 136 ~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~i~i~pg~s~~~~-K~wp~e~~~~l~ 201 (334)
T COG0859 136 ERYLALLEDLGLYPPPEPQLDFP-----------LPRPPIELAKN--LAKFDRPYIVINPGASRGSA-KRWPLEHYAELA 201 (334)
T ss_pred HHHHHHHHHhcCCCCCCCccCcc-----------cccCHHHHHHH--HHhcCCCeEEEecccccccc-CCCCHHHHHHHH
Confidence 1100001111211111 000000 01111111111 1111 689999999 88642 11 123566667
Q ss_pred HHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCC-cchHHHHHHHcccceehhhHHHHHHHHcCCCEEEE
Q 016179 266 ELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS-SNLKYDAFSASRVALCTSGTVAVELQLARLPCVVA 344 (394)
Q Consensus 266 ~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~-~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~ 344 (394)
+.+.++. .++++.+++ .+ ++..++........+.+. +.. ..++..+++.||++|+-..+.+==|+|+|+|+|.+
T Consensus 202 ~~l~~~~--~~Vvl~g~~-~e-~e~~~~i~~~~~~~~~l~-~k~sL~e~~~li~~a~l~I~~DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 202 ELLIAKG--YQVVLFGGP-DE-EERAEEIAKGLPNAVILA-GKTSLEELAALIAGADLVIGNDSGPMHLAAALGTPTIAL 276 (334)
T ss_pred HHHHHCC--CEEEEecCh-HH-HHHHHHHHHhcCCccccC-CCCCHHHHHHHHhcCCEEEccCChHHHHHHHcCCCEEEE
Confidence 7776643 777776665 33 344555544443222223 322 46788899999999998766654599999999999
Q ss_pred EcCChH
Q 016179 345 YRAHFL 350 (394)
Q Consensus 345 y~~~~~ 350 (394)
|..+.-
T Consensus 277 yg~t~~ 282 (334)
T COG0859 277 YGPTSP 282 (334)
T ss_pred ECCCCc
Confidence 865543
No 102
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.42 E-value=4e-06 Score=73.35 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=77.8
Q ss_pred hHHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhh-CCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEE
Q 016179 227 SEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS-FPELITVIHVAPNRHVENYITGLIQKWP--VPSI 303 (394)
Q Consensus 227 ~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~-~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~ 303 (394)
++..+...+.++++++|+..| +.. ..+.+..+++++..+.++ .+++++++++.. .....+.......+ .++.
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g-~~~--~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~--~~~~~~~~~~~~~~~~~~i~ 76 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIG-RLD--PEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG--EYKKELKNLIEKLNLKENII 76 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEES-ESS--GGGTHHHHHHHHHHHHHHHHTTEEEEEESHC--CHHHHHHHHHHHTTCGTTEE
T ss_pred hHHHHHHcCCCCCCeEEEEEe-cCc--cccCHHHHHHHHHHHHhhcCCCeEEEEEccc--cccccccccccccccccccc
Confidence 456777788888887777764 333 234467788999988753 578888887722 22333444444333 2577
Q ss_pred EecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHH
Q 016179 304 LVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEW 353 (394)
Q Consensus 304 ~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~ 353 (394)
++.....+++.++++.||++|..| |.+.+||+++|+|+|+ ...+.....
T Consensus 77 ~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~-~~~~~~~e~ 130 (172)
T PF00534_consen 77 FLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIA-SDIGGNNEI 130 (172)
T ss_dssp EEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEE-ESSTHHHHH
T ss_pred ccccccccccccccccceeccccccccccccccccccccccceee-ccccCCcee
Confidence 764421248999999999999997 4555699999999886 555555433
No 103
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.40 E-value=1.2e-05 Score=79.32 Aligned_cols=147 Identities=14% Similarity=0.114 Sum_probs=92.0
Q ss_pred HHhhhheeecCcccHHHHHhc-CC--CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECC
Q 016179 172 AAFVDHILCILPNEEAICRLN-GL--AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 248 (394)
Q Consensus 172 ~~~~d~v~~~~p~~~~~~~~~-g~--~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgG 248 (394)
.+.+|.+++.++..++.+.+. +. ++.++.+++...... ... ..+.+...++.+ |
T Consensus 155 ~~~~d~ii~~s~~~~~~l~~~~~~~~~v~~ip~g~~~~~~~---------------~~~-------~~~~~~~~i~~v-g 211 (372)
T cd04949 155 LDKVDGVIVATEQQKQDLQKQFGNYNPIYTIPVGSIDPLKL---------------PAQ-------FKQRKPHKIITV-A 211 (372)
T ss_pred hhhCCEEEEccHHHHHHHHHHhCCCCceEEEcccccChhhc---------------ccc-------hhhcCCCeEEEE-E
Confidence 456899999999888776543 22 244555554332210 000 011233455554 3
Q ss_pred CcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCCcchHHHHHHHcccceeh
Q 016179 249 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVALCT 326 (394)
Q Consensus 249 Srg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~~~~~~~~~~~ADl~I~~ 326 (394)
.. ..- +.+..+++++..+.++.|++++++.+.+.. ...++......+. ++.+. |+ .+++.++|+.||++|..
T Consensus 212 rl-~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~ad~~v~~ 285 (372)
T cd04949 212 RL-APE-KQLDQLIKAFAKVVKQVPDATLDIYGYGDE--EEKLKELIEELGLEDYVFLK-GY-TRDLDEVYQKAQLSLLT 285 (372)
T ss_pred cc-Ccc-cCHHHHHHHHHHHHHhCCCcEEEEEEeCch--HHHHHHHHHHcCCcceEEEc-CC-CCCHHHHHhhhhEEEec
Confidence 33 222 346678899999988889999888876532 2334444443332 35544 44 57899999999999999
Q ss_pred h-----hHHHHHHHHcCCCEEEEEcCC
Q 016179 327 S-----GTVAVELQLARLPCVVAYRAH 348 (394)
Q Consensus 327 S-----Gt~tlEa~a~G~P~Iv~y~~~ 348 (394)
| |.+.+||+++|+|+|. ++.+
T Consensus 286 S~~Eg~~~~~lEAma~G~PvI~-~~~~ 311 (372)
T cd04949 286 SQSEGFGLSLMEALSHGLPVIS-YDVN 311 (372)
T ss_pred ccccccChHHHHHHhCCCCEEE-ecCC
Confidence 9 4455699999999886 5443
No 104
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=98.37 E-value=9.3e-05 Score=72.40 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=72.1
Q ss_pred HHHHhhcCCCCCCcEEEEECCCcHHHHHhh-HHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEec
Q 016179 228 EDFKNKYSVPSGATVISLLPGSRLQEVARM-LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVP 306 (394)
Q Consensus 228 ~~~r~~lgl~~~~~~IlllgGSrg~ei~~~-l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~ 306 (394)
+.+..+++++.+++.|++-||++....++- ...+.+.++.|.+ .+.++++.+++++ ++..++.....+..+.-+.
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~--~~~~ivl~G~~~e--~~~~~~i~~~~~~~~~~l~ 237 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID--QGYQVVLFGSAKD--HPAGNEIEALLPGELRNLA 237 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH--CCCEEEEEEChhh--HHHHHHHHHhCCcccccCC
Confidence 344567788777889999999863212221 2256667777754 3578888877643 2333333322221221122
Q ss_pred CC-CcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEEEcCC
Q 016179 307 GG-SSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAH 348 (394)
Q Consensus 307 g~-~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~~~ 348 (394)
|. ...+...+++.||++|+--.+..==|+|+|+|+|.+|...
T Consensus 238 g~~sL~el~ali~~a~l~I~~DSGp~HlAaA~~~P~i~lfG~t 280 (334)
T TIGR02195 238 GETSLDEAVDLIALAKAVVTNDSGLMHVAAALNRPLVALYGST 280 (334)
T ss_pred CCCCHHHHHHHHHhCCEEEeeCCHHHHHHHHcCCCEEEEECCC
Confidence 32 1467889999999999976444323899999999887543
No 105
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.35 E-value=3.4e-05 Score=77.74 Aligned_cols=154 Identities=13% Similarity=0.060 Sum_probs=94.2
Q ss_pred HHHhhhheeecCcccHHHHHh-cCC---CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEE
Q 016179 171 LAAFVDHILCILPNEEAICRL-NGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 246 (394)
Q Consensus 171 l~~~~d~v~~~~p~~~~~~~~-~g~---~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Illl 246 (394)
+.+.+|.+++.++..++.+.+ ++. ++.++.+++..... . .. ...++.++|+.+
T Consensus 180 ~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~--~--------------~~-------~~~~~~~~il~~ 236 (407)
T cd04946 180 LLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGI--I--------------SK-------PSKDDTLRIVSC 236 (407)
T ss_pred HHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccc--c--------------CC-------CCCCCCEEEEEe
Confidence 457899999999999888754 333 24455555432211 0 00 012344555554
Q ss_pred CCCcHHHHHhhHHHHHHHHHHhhhhCCC--eEEEEEeCCCcChHHHHHHHhhcCCC--CEEEecCCC-cchHHHHHHH--
Q 016179 247 PGSRLQEVARMLPIFAKTVELLKDSFPE--LITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSA-- 319 (394)
Q Consensus 247 gGSrg~ei~~~l~~ll~a~~~l~~~~~~--~~~vi~~g~~~~~~~~l~~~~~~~~~--~v~~~~g~~-~~~~~~~~~~-- 319 (394)
| |-...++ ++.+++++..+.+..|+ +.+++++++. . .+.+++...+.+. ++.+. |+. .+++.++|+.
T Consensus 237 -G-rl~~~Kg-~~~li~a~~~l~~~~p~~~l~~~iiG~g~-~-~~~l~~~~~~~~~~~~V~f~-G~v~~~e~~~~~~~~~ 310 (407)
T cd04946 237 -S-YLVPVKR-VDLIIKALAALAKARPSIKIKWTHIGGGP-L-EDTLKELAESKPENISVNFT-GELSNSEVYKLYKENP 310 (407)
T ss_pred -e-ccccccC-HHHHHHHHHHHHHhCCCceEEEEEEeCch-H-HHHHHHHHHhcCCCceEEEe-cCCChHHHHHHHhhcC
Confidence 3 3333343 67889999999877664 5556666542 2 3445555543332 35554 543 3578888875
Q ss_pred cccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 320 SRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 320 ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
+|+++..| |.+.+|||++|+|+|. .+.++....+
T Consensus 311 ~~v~v~~S~~Eg~p~~llEAma~G~PVIa-s~vgg~~e~i 349 (407)
T cd04946 311 VDVFVNLSESEGLPVSIMEAMSFGIPVIA-TNVGGTPEIV 349 (407)
T ss_pred CCEEEeCCccccccHHHHHHHHcCCCEEe-CCCCCcHHHh
Confidence 67787777 4566799999999875 5666666555
No 106
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.33 E-value=1.7e-05 Score=78.89 Aligned_cols=150 Identities=13% Similarity=0.041 Sum_probs=89.2
Q ss_pred HHHHhhhheeecCcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCC
Q 016179 170 NLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGS 249 (394)
Q Consensus 170 ~l~~~~d~v~~~~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGS 249 (394)
++.+.+|.+++.++...+.+.+.+.+++++.|-+..... .+. .......+.. ...+.++|+.. |+
T Consensus 149 ~~~~~ad~vi~~S~~l~~~~~~~~~~i~~i~ngvd~~~f--~~~----------~~~~~~~~~~--~~~~~~~i~y~-G~ 213 (373)
T cd04950 149 RLLKRADLVFTTSPSLYEAKRRLNPNVVLVPNGVDYEHF--AAA----------RDPPPPPADL--AALPRPVIGYY-GA 213 (373)
T ss_pred HHHHhCCEEEECCHHHHHHHhhCCCCEEEcccccCHHHh--hcc----------cccCCChhHH--hcCCCCEEEEE-ec
Confidence 467789999999999998888777678888876643322 110 0000000111 12345666665 45
Q ss_pred cHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehh--
Q 016179 250 RLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS-- 327 (394)
Q Consensus 250 rg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S-- 327 (394)
.+. +..+..+ ..+.+..|++++++++..+... + ..+ .... .+++++.....++++++++.+|++|..+
T Consensus 214 l~~--~~d~~ll----~~la~~~p~~~~vliG~~~~~~-~-~~~-~~~~-~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~ 283 (373)
T cd04950 214 IAE--WLDLELL----EALAKARPDWSFVLIGPVDVSI-D-PSA-LLRL-PNVHYLGPKPYKELPAYLAGFDVAILPFRL 283 (373)
T ss_pred ccc--ccCHHHH----HHHHHHCCCCEEEEECCCcCcc-C-hhH-hccC-CCEEEeCCCCHHHHHHHHHhCCEEecCCcc
Confidence 543 2223322 3334456889999888641111 1 111 1222 3687774321478999999999999764
Q ss_pred --------hHHHHHHHHcCCCEEEE
Q 016179 328 --------GTVAVELQLARLPCVVA 344 (394)
Q Consensus 328 --------Gt~tlEa~a~G~P~Iv~ 344 (394)
+.-.+|++++|+|+|..
T Consensus 284 ~~~~~~~~P~Kl~EylA~G~PVVat 308 (373)
T cd04950 284 NELTRATSPLKLFEYLAAGKPVVAT 308 (373)
T ss_pred chhhhcCCcchHHHHhccCCCEEec
Confidence 23345999999998853
No 107
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=98.31 E-value=0.00015 Score=71.43 Aligned_cols=276 Identities=14% Similarity=0.146 Sum_probs=133.5
Q ss_pred ceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIE 110 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~ 110 (394)
|||||+--+.=||+. +..+++.||+..|+ .++..+..+...+. ++..-...++-........+. +....++.+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~-a~I~~l~~~~~~~l-~~~~P~vd~vi~~~~~~~~~~----~~~~~~l~~ 74 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQ-AIIDVMAPAWCRPL-LSRMPEVNEAIPMPLGHGALE----IGERRRLGH 74 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCC-CeEEEEechhhHHH-HhcCCccCEEEecccccchhh----hHHHHHHHH
Confidence 689999888899999 88999999999996 88776665543221 111000111110000000011 122344667
Q ss_pred HHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHHH
Q 016179 111 AALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICR 190 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~~ 190 (394)
.+++.++|++|..+. .+-..+...+. +.|..+-|... .| + + ..+... ..+.. ..+...+.+.
T Consensus 75 ~lr~~~yD~vidl~~-~~~s~~l~~~~--------~~~~rig~~~~-~~-~--~--~~~~~~-~~~~~--~~~h~~~~~~ 136 (348)
T PRK10916 75 SLREKRYDRAYVLPN-SFKSALVPFFA--------GIPHRTGWRGE-MR-Y--G--LLNDLR-VLDKE--AFPLMVERYV 136 (348)
T ss_pred HHHhcCCCEEEECCC-cHHHHHHHHHc--------CCCeEeecccC-cc-c--c--cccccc-ccCcc--cCcHHHHHHH
Confidence 788899999997642 23333333332 44543344211 10 0 0 000000 00000 0111111111
Q ss_pred h----cCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHHHhh-HHHHHHHH
Q 016179 191 L----NGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARM-LPIFAKTV 265 (394)
Q Consensus 191 ~----~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei~~~-l~~ll~a~ 265 (394)
. .+......+.|......++. + ...+.+.+...+++.++++.|++-||++....++- ...+.+.+
T Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~ 206 (348)
T PRK10916 137 ALAYDKGVMRTAADLPQPLLWPQLQ---------V-SEGEKSETCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELA 206 (348)
T ss_pred HHhcccccccccccCCCCcCCCccc---------c-CHHHHHHHHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHH
Confidence 1 01000001111000000000 0 00112234455666667789999999873112221 12456666
Q ss_pred HHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC----CEEEecCCC-cchHHHHHHHcccceehh-hHHHHHHHHcCC
Q 016179 266 ELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV----PSILVPGGS-SNLKYDAFSASRVALCTS-GTVAVELQLARL 339 (394)
Q Consensus 266 ~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~----~v~~~~g~~-~~~~~~~~~~ADl~I~~S-Gt~tlEa~a~G~ 339 (394)
+.|.+ .+.++++.+++.+ ++..++....... ++.-+.|.. ..+...+++.||++|+-- |.+=+ |+|+|+
T Consensus 207 ~~l~~--~~~~vvl~Gg~~e--~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDTGp~Hl-AaA~g~ 281 (348)
T PRK10916 207 QQLID--EGYQVVLFGSAKD--HEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDSGLMHV-AAALNR 281 (348)
T ss_pred HHHHH--CCCeEEEEeCHHh--HHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHhCCEEEecCChHHHH-HHHhCC
Confidence 66653 3678888777632 2233333322211 122222321 467888999999999966 44445 999999
Q ss_pred CEEEEEc
Q 016179 340 PCVVAYR 346 (394)
Q Consensus 340 P~Iv~y~ 346 (394)
|+|.+|-
T Consensus 282 P~valfG 288 (348)
T PRK10916 282 PLVALYG 288 (348)
T ss_pred CEEEEEC
Confidence 9998874
No 108
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=98.31 E-value=1.6e-05 Score=81.38 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=66.9
Q ss_pred hhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCC----eEEEEEeCCC----cC---hHHHHHHHhhc---
Q 016179 232 NKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPN----RH---VENYITGLIQK--- 297 (394)
Q Consensus 232 ~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~----~~~vi~~g~~----~~---~~~~l~~~~~~--- 297 (394)
+..+..+++++|+.+ +|-...|. +..+++|++.+.+++|+ +++++++++. .. +.+.+++...+
T Consensus 256 ~~~~~~~~~~~il~v--gRl~~~Kg-i~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~ 332 (460)
T cd03788 256 ELRERLGGRKLIVGV--DRLDYSKG-IPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRING 332 (460)
T ss_pred HHHHhcCCCEEEEEe--cCccccCC-HHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHh
Confidence 334555667666655 45544444 67788999988877775 5677665432 11 22223332211
Q ss_pred -CC----CCEEEecCCC-cchHHHHHHHcccceehh-----hHHHHHHHHcCCC
Q 016179 298 -WP----VPSILVPGGS-SNLKYDAFSASRVALCTS-----GTVAVELQLARLP 340 (394)
Q Consensus 298 -~~----~~v~~~~g~~-~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P 340 (394)
.+ .++.++.+.. .+++.++|++||++|..| |.+.+|+++||+|
T Consensus 333 ~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p 386 (460)
T cd03788 333 KFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDD 386 (460)
T ss_pred ccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecC
Confidence 11 1344554432 578999999999999998 5566799999999
No 109
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=98.22 E-value=8.2e-05 Score=72.28 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=63.6
Q ss_pred cCCCCCCcEEEEECCCcHHHHHhh-HHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCC-cc
Q 016179 234 YSVPSGATVISLLPGSRLQEVARM-LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS-SN 311 (394)
Q Consensus 234 lgl~~~~~~IlllgGSrg~ei~~~-l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~-~~ 311 (394)
++...+++.|++.||+... -++. ...+.+.++.|.++ +.++++.+|+..+ ++..++.....+ +..+. +.. ..
T Consensus 173 ~~~~~~~~~i~i~~gas~~-~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e-~~~~~~i~~~~~-~~~l~-g~~sL~ 246 (319)
T TIGR02193 173 LGHALPAPYAVLLHATSRD-DKTWPEERWRELARLLLAR--GLQIVLPWGNDAE-KQRAERIAEALP-GAVVL-PKMSLA 246 (319)
T ss_pred hhccCCCCEEEEEeCCCcc-cCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHH-HHHHHHHHhhCC-CCeec-CCCCHH
Confidence 3444456778888887653 2221 23566777777542 6787776554222 222333333222 22222 321 46
Q ss_pred hHHHHHHHcccceehh-hHHHHHHHHcCCCEEEEEcC
Q 016179 312 LKYDAFSASRVALCTS-GTVAVELQLARLPCVVAYRA 347 (394)
Q Consensus 312 ~~~~~~~~ADl~I~~S-Gt~tlEa~a~G~P~Iv~y~~ 347 (394)
+..++++.||++|+-- |.+=+ |+++|+|+|.+|-.
T Consensus 247 el~ali~~a~l~I~~DSgp~Hl-Aaa~g~P~i~lfg~ 282 (319)
T TIGR02193 247 EVAALLAGADAVVGVDTGLTHL-AAALDKPTVTLYGA 282 (319)
T ss_pred HHHHHHHcCCEEEeCCChHHHH-HHHcCCCEEEEECC
Confidence 7888999999999976 44445 88999999988743
No 110
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=98.11 E-value=7.3e-05 Score=66.06 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCEEEEeC-CCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHH-HH
Q 016179 95 LPHIYKFRVRLKETIEAALLFRPHAVVTVD-SKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKN-LA 172 (394)
Q Consensus 95 l~~~~~~~~~~~~~~~~i~~~~PD~Vi~~~-~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~-l~ 172 (394)
+..+...+..+.++.+++.+.+||+||++| ...+|+.+++++.+.... .+.++ ++. . + |+-......+=| +.
T Consensus 71 ~~~~~~~l~~~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~--~~~ki-IyI-E-S-~aRv~~lSlTGklly 144 (170)
T PF08660_consen 71 LTSIFTTLRAFLQSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGL--RGSKI-IYI-E-S-FARVKTLSLTGKLLY 144 (170)
T ss_pred HhhHHHHHHHHHHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhc--cCCcE-EEE-E-e-eeecCCCchHHHHHH
Confidence 344556677778889999999999999998 456788888777643211 15664 432 1 2 221111123323 58
Q ss_pred HhhhheeecCcccHHHHHhcCCCeEEEcC
Q 016179 173 AFVDHILCILPNEEAICRLNGLAATFVGH 201 (394)
Q Consensus 173 ~~~d~v~~~~p~~~~~~~~~g~~~~~vG~ 201 (394)
+++|.++|-.|+..+.|+ ++.|.|.
T Consensus 145 ~~aD~f~VQW~~l~~~yp----~a~y~G~ 169 (170)
T PF08660_consen 145 PFADRFIVQWEELAEKYP----RAIYVGR 169 (170)
T ss_pred HhCCEEEEcCHHHHhHCC----CCEEEee
Confidence 899999999998888774 3677773
No 111
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=98.10 E-value=0.00036 Score=68.86 Aligned_cols=104 Identities=11% Similarity=0.129 Sum_probs=63.6
Q ss_pred CcEEEEECCCcHHHHHhh-HHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCC-CCEEEecCCC-cchHHHH
Q 016179 240 ATVISLLPGSRLQEVARM-LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP-VPSILVPGGS-SNLKYDA 316 (394)
Q Consensus 240 ~~~IlllgGSrg~ei~~~-l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~-~~v~~~~g~~-~~~~~~~ 316 (394)
.+.|++-||+... .++- ...+.+.++.|.+ .+.++++.+|++++..+..++...... .++..+.|.. ..+...+
T Consensus 183 ~~~i~i~pga~~~-~K~Wp~e~fa~l~~~L~~--~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~al 259 (352)
T PRK10422 183 QNYVVIQPTARQI-FKCWDNDKFSAVIDALQA--RGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGAL 259 (352)
T ss_pred CCeEEEecCCCcc-ccCCCHHHHHHHHHHHHH--CCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHH
Confidence 4788899998753 2321 2256667777754 368888887765322222233332211 1222222322 4678899
Q ss_pred HHHcccceehhhHHHHHHHHcCCCEEEEEc
Q 016179 317 FSASRVALCTSGTVAVELQLARLPCVVAYR 346 (394)
Q Consensus 317 ~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~ 346 (394)
++.||++|+--.+..==|+|+|+|+|.+|-
T Consensus 260 i~~a~l~v~nDSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 260 IDHAQLFIGVDSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred HHhCCEEEecCCHHHHHHHHcCCCEEEEEC
Confidence 999999999764444238999999998874
No 112
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=98.05 E-value=0.00026 Score=72.44 Aligned_cols=112 Identities=20% Similarity=0.226 Sum_probs=68.9
Q ss_pred HHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCC----eEEEEEeCCC----cChHHHHHHHhhcC---
Q 016179 230 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPN----RHVENYITGLIQKW--- 298 (394)
Q Consensus 230 ~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~----~~~vi~~g~~----~~~~~~l~~~~~~~--- 298 (394)
+|+++ .++++|+.+ +|-...|. ++.+++|++.+.+++|+ +.+++++++. .++ +.+++.+++.
T Consensus 252 lr~~~---~~~~vIl~V--gRLd~~KG-i~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~-~~l~~~i~~lv~~ 324 (456)
T TIGR02400 252 LRESL---KGRKLIIGV--DRLDYSKG-LPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEY-QQLRRQVEELVGR 324 (456)
T ss_pred HHHHc---CCCeEEEEc--cccccccC-HHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHH-HHHHHHHHHHHHH
Confidence 45555 255555544 45555554 78899999998877775 4566665432 111 2222222211
Q ss_pred -----C----CCEEEecCCC-cchHHHHHHHcccceehh-----hHHHHHHHHcCCC----EEEEEcCC
Q 016179 299 -----P----VPSILVPGGS-SNLKYDAFSASRVALCTS-----GTVAVELQLARLP----CVVAYRAH 348 (394)
Q Consensus 299 -----~----~~v~~~~g~~-~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P----~Iv~y~~~ 348 (394)
+ ..+.++.+.. .+++.++|++||+++..| |.+.+|+++||+| +|+....+
T Consensus 325 in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G 393 (456)
T TIGR02400 325 INGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG 393 (456)
T ss_pred HHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCC
Confidence 1 1244443322 578999999999999999 5666799999999 77643333
No 113
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.98 E-value=0.00065 Score=66.77 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=64.0
Q ss_pred CCcEEEEECCCcHHHHHhh-HHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC-CEEEecCCC-cchHHH
Q 016179 239 GATVISLLPGSRLQEVARM-LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGS-SNLKYD 315 (394)
Q Consensus 239 ~~~~IlllgGSrg~ei~~~-l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~-~v~~~~g~~-~~~~~~ 315 (394)
+++.|++-||++.. .++- ...+.+.++.|.+ .+.++++.++++++.++..++.....+. ++.-+.|.. ..++..
T Consensus 180 ~~~~i~i~p~a~~~-~K~Wp~e~~~~l~~~l~~--~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~a 256 (344)
T TIGR02201 180 GQNYIVIQPTSRWF-FKCWDNDRFSALIDALHA--RGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAA 256 (344)
T ss_pred CCCEEEEeCCCCcc-ccCCCHHHHHHHHHHHHh--CCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHH
Confidence 45778899998763 2221 2355666666654 3578888877642212223333222221 222222321 467889
Q ss_pred HHHHcccceehhh-HHHHHHHHcCCCEEEEEcC
Q 016179 316 AFSASRVALCTSG-TVAVELQLARLPCVVAYRA 347 (394)
Q Consensus 316 ~~~~ADl~I~~SG-t~tlEa~a~G~P~Iv~y~~ 347 (394)
+++.||++|+--. .+=+ |+|+|+|+|.+|-.
T Consensus 257 li~~a~l~Vs~DSGp~Hl-AaA~g~p~v~Lfgp 288 (344)
T TIGR02201 257 LIDHARLFIGVDSVPMHM-AAALGTPLVALFGP 288 (344)
T ss_pred HHHhCCEEEecCCHHHHH-HHHcCCCEEEEECC
Confidence 9999999999754 4445 99999999988753
No 114
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.93 E-value=0.001 Score=64.68 Aligned_cols=102 Identities=12% Similarity=0.165 Sum_probs=59.6
Q ss_pred CCcEEEEECCCcHHHHHhhHH--HHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHH
Q 016179 239 GATVISLLPGSRLQEVARMLP--IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 316 (394)
Q Consensus 239 ~~~~IlllgGSrg~ei~~~l~--~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~ 316 (394)
+.+.|++.+|+... .+..| .+.+.++.|.+ .+.++++..|+..+ ++..++..+... .+.+.......++..+
T Consensus 177 ~~~~i~~~~~~s~~--~k~Wp~e~~a~li~~l~~--~~~~ivl~~G~~~e-~~~~~~i~~~~~-~~~l~g~~sL~elaal 250 (322)
T PRK10964 177 AGPYLVFLHATTRD--DKHWPEAHWRELIGLLAP--SGLRIKLPWGAEHE-EQRAKRLAEGFP-YVEVLPKLSLEQVARV 250 (322)
T ss_pred CCCeEEEEeCCCcc--cccCCHHHHHHHHHHHHH--CCCeEEEeCCCHHH-HHHHHHHHccCC-cceecCCCCHHHHHHH
Confidence 44566666666432 22233 56677777754 25777665443222 233333333221 2333322224678889
Q ss_pred HHHcccceehhhHHHHHHHHcCCCEEEEEc
Q 016179 317 FSASRVALCTSGTVAVELQLARLPCVVAYR 346 (394)
Q Consensus 317 ~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~ 346 (394)
++.||++|+--.+..==|+++|+|+|.+|-
T Consensus 251 i~~a~l~I~nDSGp~HlA~A~g~p~valfG 280 (322)
T PRK10964 251 LAGAKAVVSVDTGLSHLTAALDRPNITLYG 280 (322)
T ss_pred HHhCCEEEecCCcHHHHHHHhCCCEEEEEC
Confidence 999999999764444349999999998874
No 115
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.79 E-value=0.00082 Score=65.22 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=105.0
Q ss_pred HHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHHHHHHhhhheeecCcccHHHH
Q 016179 110 EAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAIC 189 (394)
Q Consensus 110 ~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~~l~~~~d~v~~~~p~~~~~~ 189 (394)
..+..-.||+||++|.. +...+..+++.+.+ +.+ +++-..|..+ .+..|.+++.-.+..
T Consensus 51 ~~~~~~~pdLiIsaGr~--t~~~~~~l~r~~gg---~~~-~V~i~~P~~~------------~~~FDlvi~p~HD~~--- 109 (311)
T PF06258_consen 51 PALEPPWPDLIISAGRR--TAPAALALRRASGG---RTK-TVQIMDPRLP------------PRPFDLVIVPEHDRL--- 109 (311)
T ss_pred ccccCCCCcEEEECCCc--hHHHHHHHHHHcCC---Cce-EEEEcCCCCC------------ccccCEEEECcccCc---
Confidence 33445679999999853 44445556655421 234 4555456543 124788876543311
Q ss_pred HhcCCCeE-EEc--CCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHH-HH-HhhHHHHHHH
Q 016179 190 RLNGLAAT-FVG--HPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQ-EV-ARMLPIFAKT 264 (394)
Q Consensus 190 ~~~g~~~~-~vG--~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~-ei-~~~l~~ll~a 264 (394)
. .|-++. -.| |++.++-.. ..+.++..+++-.+...+.+++||.-+. .. .+....+++.
T Consensus 110 ~-~~~Nvl~t~ga~~~i~~~~l~---------------~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~ 173 (311)
T PF06258_consen 110 P-RGPNVLPTLGAPNRITPERLA---------------EAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQ 173 (311)
T ss_pred C-CCCceEecccCCCcCCHHHHH---------------HHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHH
Confidence 0 122332 345 344433211 1123333445433344455567776654 21 1112234455
Q ss_pred HHHhhhhCCCeEEEEEeCCC--cChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHH--HHHHcCCC
Q 016179 265 VELLKDSFPELITVIHVAPN--RHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV--ELQLARLP 340 (394)
Q Consensus 265 ~~~l~~~~~~~~~vi~~g~~--~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tl--Ea~a~G~P 340 (394)
+..+.+..+ .++++.+... .+..+.+++..... ..+.++.+...+-..++|+.||.+++..-.+++ ||++.|+|
T Consensus 174 l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~-~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~p 251 (311)
T PF06258_consen 174 LAALAAAYG-GSLLVTTSRRTPPEAEAALRELLKDN-PGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGKP 251 (311)
T ss_pred HHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCC-CceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCC
Confidence 555555544 6777776642 11223333333222 235455432235588999999999999987774 99999999
Q ss_pred EEEEE
Q 016179 341 CVVAY 345 (394)
Q Consensus 341 ~Iv~y 345 (394)
+.+..
T Consensus 252 V~v~~ 256 (311)
T PF06258_consen 252 VYVLP 256 (311)
T ss_pred EEEec
Confidence 88753
No 116
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.75 E-value=0.0028 Score=62.10 Aligned_cols=192 Identities=11% Similarity=0.061 Sum_probs=101.8
Q ss_pred HHHHHhcCC-CEEEEeCCCCch-----HHHHHHHHHhccccCCCCCeEEEeecCccccccC---c--chHHHHHHHhhhh
Q 016179 109 IEAALLFRP-HAVVTVDSKGFS-----FRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKG---G--EARLKNLAAFVDH 177 (394)
Q Consensus 109 ~~~i~~~~P-D~Vi~~~~~~f~-----~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~---g--~~r~~~l~~~~d~ 177 (394)
.+++...+| |+|+.. +|... ..+..+++++ ++|+++++ |..|..+. + .....++.+.+|.
T Consensus 56 ~~~~~~~~~~Dvv~~~-~P~~~~~~~~~~~~~~~k~~------~~k~i~~i--hD~~~~~~~~~~~~~~~~~~~~~~aD~ 126 (333)
T PRK09814 56 DGILASLKPGDIVIFQ-FPTWNGFEFDRLFVDKLKKK------QVKIIILI--HDIEPLRFDSNYYLMKEEIDMLNLADV 126 (333)
T ss_pred HHHHhcCCCCCEEEEE-CCCCchHHHHHHHHHHHHHc------CCEEEEEE--CCcHHHhccccchhhHHHHHHHHhCCE
Confidence 345677888 988865 55442 2233444433 57864432 33432110 0 0112346778999
Q ss_pred eeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCcHHHH
Q 016179 178 ILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEV 254 (394)
Q Consensus 178 v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSrg~ei 254 (394)
+++.++..++.+.++|++ +++++ ..+.... ...+. .+++.++|+.. |+.+. .
T Consensus 127 iI~~S~~~~~~l~~~g~~~~~i~~~~--~~~~~~~------------------~~~~~---~~~~~~~i~ya-G~l~k-~ 181 (333)
T PRK09814 127 LIVHSKKMKDRLVEEGLTTDKIIVQG--IFDYLND------------------IELVK---TPSFQKKINFA-GNLEK-S 181 (333)
T ss_pred EEECCHHHHHHHHHcCCCcCceEecc--ccccccc------------------ccccc---cccCCceEEEe-cChhh-c
Confidence 999999999999888863 33332 2121100 00000 11234455554 55541 1
Q ss_pred HhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhh------
Q 016179 255 ARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSG------ 328 (394)
Q Consensus 255 ~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SG------ 328 (394)
.. +.+..+++++++.+.+. .. + ....++.+......++++++|+. |+.+.-.+
T Consensus 182 ----~~-------l~~~~~~~~l~i~G~g~-~~-~-------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~ 240 (333)
T PRK09814 182 ----PF-------LKNWSQGIKLTVFGPNP-ED-L-------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGE 240 (333)
T ss_pred ----hH-------HHhcCCCCeEEEECCCc-cc-c-------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCcc
Confidence 11 11123578877776542 21 1 11235776633224678888887 65444322
Q ss_pred ----------HHHHHHHHcCCCEEEEEcCChHHHHHHH
Q 016179 329 ----------TVAVELQLARLPCVVAYRAHFLTEWFIR 356 (394)
Q Consensus 329 ----------t~tlEa~a~G~P~Iv~y~~~~~~~~~a~ 356 (394)
.-+.|.+++|+|+|+ .+.+.+..++.+
T Consensus 241 ~~~y~~~~~P~K~~~ymA~G~PVI~-~~~~~~~~~V~~ 277 (333)
T PRK09814 241 YGEYYKYNNPHKLSLYLAAGLPVIV-WSKAAIADFIVE 277 (333)
T ss_pred chhhhhccchHHHHHHHHCCCCEEE-CCCccHHHHHHh
Confidence 114489999999886 666666666643
No 117
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=97.64 E-value=6.3e-05 Score=63.61 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=56.7
Q ss_pred EEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecC--hhhHhccCccc-cccC-cceecc-HHHhhhhHHHHHHHHHH
Q 016179 34 VFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGG--SMMSEQGMKSL-FPME-DIAVMG-IWELLPHIYKFRVRLKE 107 (394)
Q Consensus 34 IlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg--~~m~~~g~~~~-~~~~-~l~~~G-~~~~l~~~~~~~~~~~~ 107 (394)
|+|+++|+.||++ ..+|+++|++++++ +.+....+ +..++.|++.. ++.. .+.... ....+..+.+..+.+.+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~-V~~~~~~~~~~~v~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHE-VRLATPPDFRERVEAAGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLEE 79 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-E-EEEEETGGGHHHHHHTT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCe-EEEeecccceecccccCceEEEecCCcCcCcccchhhhhhhHHHHhhhhhH
Confidence 6899999999999 99999999999875 76444322 12466676632 2222 111100 22333444455556778
Q ss_pred HHHHHHhcCCCEEEEeC
Q 016179 108 TIEAALLFRPHAVVTVD 124 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~ 124 (394)
+.+.+++++||.++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~ 96 (139)
T PF03033_consen 80 AMRILARFRPDLVVAAG 96 (139)
T ss_dssp HHHHHHHHHHCCCCHCT
T ss_pred HHHHhhccCcchhhhcc
Confidence 88888888888877654
No 118
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.61 E-value=0.048 Score=55.32 Aligned_cols=162 Identities=10% Similarity=-0.001 Sum_probs=86.2
Q ss_pred HHHHHhhhheeecCcccHHHHHhcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCC--ChHHHHhhcCCCCCCcEE
Q 016179 169 KNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEG--NSEDFKNKYSVPSGATVI 243 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~~~~~~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~lgl~~~~~~I 243 (394)
+++.+.+|.+.+-.+.+.+.+++.|++ +.++.-|..- +++. ... ........++...++++|
T Consensus 171 r~vl~~~~~ItvRD~~S~~~Lk~lGv~~~~v~~~aDpAF~----L~~~---------~~~~~~~~~~~~~~~~~~~~~~V 237 (426)
T PRK10017 171 NYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWL----VDHH---------TEDFTASYAVQHWLDVAAQQKTV 237 (426)
T ss_pred HHHHhcCCEEEEccHHHHHHHHHhCCCccceEEecChhhh----CCcc---------ccccccchhhhhhhcccccCCEE
Confidence 345667999999999999999999985 4566666432 1100 000 000111222333456777
Q ss_pred EEECCCcH-H------HHHhhHHHHHHHHHHhhhhCCCeEEEEEeCC------CcChHHHHHHHhhcCC--CCEEEec-C
Q 016179 244 SLLPGSRL-Q------EVARMLPIFAKTVELLKDSFPELITVIHVAP------NRHVENYITGLIQKWP--VPSILVP-G 307 (394)
Q Consensus 244 lllgGSrg-~------ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~------~~~~~~~l~~~~~~~~--~~v~~~~-g 307 (394)
++..-... . .-......+.+++..+.++ +.+++++..- .++.....++...... .+++++. .
T Consensus 238 gisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~ 315 (426)
T PRK10017 238 AITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDE--GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDE 315 (426)
T ss_pred EEEecccccccccccccHHHHHHHHHHHHHHHHHC--CCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCC
Confidence 77532221 0 0012234556667766543 4454433321 1121222222222221 1334442 2
Q ss_pred CCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEE-E
Q 016179 308 GSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVA-Y 345 (394)
Q Consensus 308 ~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~-y 345 (394)
+...++..+++.||++|+.===+++=+++.|+|+|.+ |
T Consensus 316 ~~~~e~~~iIs~~dl~ig~RlHa~I~a~~~gvP~i~i~Y 354 (426)
T PRK10017 316 LNDLEMGKILGACELTVGTRLHSAIISMNFGTPAIAINY 354 (426)
T ss_pred CChHHHHHHHhhCCEEEEecchHHHHHHHcCCCEEEeee
Confidence 2224566889999999987655666799999999976 5
No 119
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.57 E-value=0.00032 Score=69.56 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=85.3
Q ss_pred HHHHhhhheeecCcccHHHHHh-cCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEE
Q 016179 170 NLAAFVDHILCILPNEEAICRL-NGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL 245 (394)
Q Consensus 170 ~l~~~~d~v~~~~p~~~~~~~~-~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Ill 245 (394)
+..+..|.+++.++++++.+.+ .+.+ +..+|.|-.|.+.... ...+..+++.++++.++++||.
T Consensus 130 ~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~------------~~~~~~i~~~~~~~~~~k~ILy 197 (369)
T PF04464_consen 130 RNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKS------------KENRNRIKKKLGIDKDKKVILY 197 (369)
T ss_dssp HHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHST------------T-HHHHHHHHTT--SS-EEEEE
T ss_pred hhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccC------------HHHHHHHHHHhccCCCCcEEEE
Confidence 4577889999999999888765 4554 7789999888775321 1124567888999999999999
Q ss_pred ECCCcHHHHH-----hhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHc
Q 016179 246 LPGSRLQEVA-----RMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 320 (394)
Q Consensus 246 lgGSrg~ei~-----~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~A 320 (394)
+|-=|+.... .....-.+.+..+ ..++..+++-.++. ........ .....++..+.. .+++.++|..|
T Consensus 198 aPT~R~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~li~k~Hp~--~~~~~~~~-~~~~~~i~~~~~--~~~~~~ll~~a 270 (369)
T PF04464_consen 198 APTWRDNSSNEYFKFFFSDLDFEKLNFL--LKNNYVLIIKPHPN--MKKKFKDF-KEDNSNIIFVSD--NEDIYDLLAAA 270 (369)
T ss_dssp E----GGG--GGSS----TT-HHHHHHH--HTTTEEEEE--SHH--HHTT-----TT-TTTEEE-TT---S-HHHHHHT-
T ss_pred eeccccccccccccccccccCHHHHHHH--hCCCcEEEEEeCch--hhhchhhh-hccCCcEEECCC--CCCHHHHHHhc
Confidence 9976665332 0011111222222 23578777666542 11111111 111235666554 35799999999
Q ss_pred ccceehhhHHHHHHHHcCCCEEEEEcCC
Q 016179 321 RVALCTSGTVAVELQLARLPCVVAYRAH 348 (394)
Q Consensus 321 Dl~I~~SGt~tlEa~a~G~P~Iv~y~~~ 348 (394)
|++||--.++..|.+++++|+|. |..+
T Consensus 271 DiLITDySSi~fD~~~l~KPiif-y~~D 297 (369)
T PF04464_consen 271 DILITDYSSIIFDFLLLNKPIIF-YQPD 297 (369)
T ss_dssp SEEEESS-THHHHHGGGT--EEE-E-TT
T ss_pred CEEEEechhHHHHHHHhCCCEEE-Eecc
Confidence 99999988888899999999885 4433
No 120
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.52 E-value=0.0004 Score=58.03 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=52.0
Q ss_pred HHHHHH-HHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehh------hHH
Q 016179 258 LPIFAK-TVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS------GTV 330 (394)
Q Consensus 258 l~~ll~-a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S------Gt~ 330 (394)
+..+++ +++++.++.|++++.+.+... + .+++. . ..++++... .+++.++++.||++|..+ ++.
T Consensus 17 ~~~li~~~~~~l~~~~p~~~l~i~G~~~-~---~l~~~-~--~~~v~~~g~--~~e~~~~l~~~dv~l~p~~~~~~~~~k 87 (135)
T PF13692_consen 17 LEELIEAALERLKEKHPDIELIIIGNGP-D---ELKRL-R--RPNVRFHGF--VEELPEILAAADVGLIPSRFNEGFPNK 87 (135)
T ss_dssp HHHHHH-HHHHHHHHSTTEEEEEECESS-----HHCCH-H--HCTEEEE-S---HHHHHHHHC-SEEEE-BSS-SCC-HH
T ss_pred ccchhhhHHHHHHHHCcCEEEEEEeCCH-H---HHHHh-c--CCCEEEcCC--HHHHHHHHHhCCEEEEEeeCCCcCcHH
Confidence 456777 889998888999988877642 2 23333 1 126877744 378999999999999965 234
Q ss_pred HHHHHHcCCCEEEE
Q 016179 331 AVELQLARLPCVVA 344 (394)
Q Consensus 331 tlEa~a~G~P~Iv~ 344 (394)
.+|++++|+|+|..
T Consensus 88 ~~e~~~~G~pvi~~ 101 (135)
T PF13692_consen 88 LLEAMAAGKPVIAS 101 (135)
T ss_dssp HHHHHCTT--EEEE
T ss_pred HHHHHHhCCCEEEC
Confidence 45999999998863
No 121
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.40 E-value=0.0009 Score=67.92 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=73.8
Q ss_pred HHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC---CEEEec
Q 016179 230 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV---PSILVP 306 (394)
Q Consensus 230 ~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~---~v~~~~ 306 (394)
.|+++|||+|..+.+.+ .+. .++.|..++...++.+..|+-++++...+. .-++.+++.+.+.+. ++.+.+
T Consensus 275 ~R~~~gLp~d~vvF~~f--n~~---~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~-~~~~~l~~~~~~~Gv~~~Ri~f~~ 348 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSF--NNL---FKISPETLDLWARILKAVPNSRLWLLRFPA-SGEARLRRRFAAHGVDPDRIIFSP 348 (468)
T ss_dssp ETGGGT--SSSEEEEE---S-G---GG--HHHHHHHHHHHHHSTTEEEEEEETST-THHHHHHHHHHHTTS-GGGEEEEE
T ss_pred CHHHcCCCCCceEEEec--Ccc---ccCCHHHHHHHHHHHHhCCCcEEEEeeCCH-HHHHHHHHHHHHcCCChhhEEEcC
Confidence 46789999987555543 443 345778888888888888999887776653 334555555555554 355543
Q ss_pred CCCcchHHHHHHHcccceehh----hHHHHHHHHcCCCEEEEEcCChHHHHHH-HhhccCCccchhhhhcCC
Q 016179 307 GGSSNLKYDAFSASRVALCTS----GTVAVELQLARLPCVVAYRAHFLTEWFI-RYKAKIPYISLPNILLDS 373 (394)
Q Consensus 307 g~~~~~~~~~~~~ADl~I~~S----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~a-~~~vk~~~~~l~Nil~~~ 373 (394)
.....+.-..++.+|+++=.. ||+|+||+.+|+|+|. .++..+....+ ..+. ..|++++++..
T Consensus 349 ~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVT-l~G~~~~sR~~aSiL~---~lGl~ElIA~s 416 (468)
T PF13844_consen 349 VAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVT-LPGETMASRVGASILR---ALGLPELIADS 416 (468)
T ss_dssp ---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB----SSGGGSHHHHHHH---HHT-GGGB-SS
T ss_pred CCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEe-ccCCCchhHHHHHHHH---HcCCchhcCCC
Confidence 211234445678899998754 4566799999999774 55544333332 2222 56777777654
No 122
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=97.38 E-value=0.022 Score=59.24 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=34.3
Q ss_pred hHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 312 LKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 312 ~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
+.+++++.||+.|..| |-+.+||++||+|+|. .+.+.+..++
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~-t~~~gf~~~v 513 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSIT-TNLSGFGCFM 513 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEE-ccCcchhhhh
Confidence 4788999999999999 6777899999999886 6666664444
No 123
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=97.30 E-value=0.00053 Score=58.12 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEecChhhH----hccCccccccCcceeccH---HHhhhhHHHHHHHHHHHHHHH--Hh
Q 016179 44 DSIGSRLMSAMKKLAPLPVSFSGVGGSMMS----EQGMKSLFPMEDIAVMGI---WELLPHIYKFRVRLKETIEAA--LL 114 (394)
Q Consensus 44 h~~a~~l~~~L~~~~~~~~~~~g~gg~~m~----~~g~~~~~~~~~l~~~G~---~~~l~~~~~~~~~~~~~~~~i--~~ 114 (394)
-.+..+++++|.+++.+ ++++....+... ..+++. ..+++.+. ...+. .+..+.+++ ++
T Consensus 4 ~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~ 71 (160)
T PF13579_consen 4 ERYVRELARALAARGHE-VTVVTPQPDPEDDEEEEDGVRV----HRLPLPRRPWPLRLLR-------FLRRLRRLLAARR 71 (160)
T ss_dssp HHHHHHHHHHHHHTT-E-EEEEEE---GGG-SEEETTEEE----EEE--S-SSSGGGHCC-------HHHHHHHHCHHCT
T ss_pred HHHHHHHHHHHHHCCCE-EEEEecCCCCcccccccCCceE----EeccCCccchhhhhHH-------HHHHHHHHHhhhc
Confidence 44568899999998775 887776543222 122221 11211111 11222 223344555 78
Q ss_pred cCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCcccccc-C-cchH----H-HHHHHhhhheeecCcccHH
Q 016179 115 FRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWK-G-GEAR----L-KNLAAFVDHILCILPNEEA 187 (394)
Q Consensus 115 ~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~-~-g~~r----~-~~l~~~~d~v~~~~p~~~~ 187 (394)
.+||+|++.++ ....++..+++.. ++|++++. +..|... . ...+ . +++.+.+|.+++.++..++
T Consensus 72 ~~~Dvv~~~~~--~~~~~~~~~~~~~-----~~p~v~~~--h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 142 (160)
T PF13579_consen 72 ERPDVVHAHSP--TAGLVAALARRRR-----GIPLVVTV--HGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRR 142 (160)
T ss_dssp ---SEEEEEHH--HHHHHHHHHHHHH-----T--EEEE---SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHH
T ss_pred cCCeEEEeccc--chhHHHHHHHHcc-----CCcEEEEE--CCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHH
Confidence 89999998752 2333333333121 68976554 3322110 0 0001 1 2357789999999999999
Q ss_pred HHHhcCCC---eEEEcC
Q 016179 188 ICRLNGLA---ATFVGH 201 (394)
Q Consensus 188 ~~~~~g~~---~~~vG~ 201 (394)
.+.++|++ +.++.|
T Consensus 143 ~l~~~g~~~~ri~vipn 159 (160)
T PF13579_consen 143 YLRRYGVPPDRIHVIPN 159 (160)
T ss_dssp HHHHH---GGGEEE---
T ss_pred HHHHhCCCCCcEEEeCc
Confidence 99888765 445443
No 124
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=97.30 E-value=0.0018 Score=62.58 Aligned_cols=102 Identities=22% Similarity=0.223 Sum_probs=71.8
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc--ChHHHHHHHhhcCCCCEEEecCCC-cchHHHHH
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR--HVENYITGLIQKWPVPSILVPGGS-SNLKYDAF 317 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~--~~~~~l~~~~~~~~~~v~~~~g~~-~~~~~~~~ 317 (394)
.+|.+. ||. -.++-.+.+++++.++.+++|+++|++.+.+.. ++++.+++. ..+.++.++ |.. -+++.++|
T Consensus 196 ~~ivv~--sRL-vyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~--~l~~rV~~l-G~v~h~~Vr~vl 269 (426)
T KOG1111|consen 196 ITIVVA--SRL-VYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKL--FLQDRVVML-GTVPHDRVRDVL 269 (426)
T ss_pred eEEEEE--eee-eeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHh--hccCceEEe-cccchHHHHHHH
Confidence 345444 776 235667889999999999999999999987642 233333322 123356665 322 46799999
Q ss_pred HHcccceehh-----hHHHHHHHHcCCCEEEEEcCCh
Q 016179 318 SASRVALCTS-----GTVAVELQLARLPCVVAYRAHF 349 (394)
Q Consensus 318 ~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~ 349 (394)
..-|+.+-.| |.+.+|||.||+|+|. .++++
T Consensus 270 ~~G~IFlntSlTEafc~~ivEAaScGL~VVs-TrVGG 305 (426)
T KOG1111|consen 270 VRGDIFLNTSLTEAFCMVIVEAASCGLPVVS-TRVGG 305 (426)
T ss_pred hcCcEEeccHHHHHHHHHHHHHHhCCCEEEE-eecCC
Confidence 9999999999 5666799999999886 44443
No 125
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.14 E-value=0.017 Score=63.24 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=63.8
Q ss_pred CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeE----EEEEeCCCc----ChHHHHHHHhhcC--------C---
Q 016179 239 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELI----TVIHVAPNR----HVENYITGLIQKW--------P--- 299 (394)
Q Consensus 239 ~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~----~vi~~g~~~----~~~~~l~~~~~~~--------~--- 299 (394)
++++|+.+ +|-...| .++.+++|++.+.+++|+.+ ++.++++.. ++ +.+++.+.+. +
T Consensus 278 ~~~lIl~V--gRLd~~K-Gi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y-~~l~~~v~~l~g~In~~~g~~~ 353 (797)
T PLN03063 278 GRKVILGV--DRLDMIK-GIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEY-QKLKSQVHELVGRINGRFGSVS 353 (797)
T ss_pred CCeEEEEe--ccccccc-CHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHH-HHHHHHHHHHHHHhhcccccCC
Confidence 45555544 4554444 47888999999887778753 444444321 12 1222222211 1
Q ss_pred -CCEEEecCCC-cchHHHHHHHcccceehh-----hHHHHHHHHcCCC---EEEEEcCC
Q 016179 300 -VPSILVPGGS-SNLKYDAFSASRVALCTS-----GTVAVELQLARLP---CVVAYRAH 348 (394)
Q Consensus 300 -~~v~~~~g~~-~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P---~Iv~y~~~ 348 (394)
..++++.++. .++..++|++||++|..| |.+.+|+++||+| ++|+....
T Consensus 354 ~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~ 412 (797)
T PLN03063 354 SVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA 412 (797)
T ss_pred CceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCc
Confidence 1233343221 467899999999999999 5677799999999 34345443
No 126
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.07 E-value=0.11 Score=49.96 Aligned_cols=154 Identities=11% Similarity=0.045 Sum_probs=87.6
Q ss_pred HHHHHHhhhheeecCcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEEC
Q 016179 168 LKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 247 (394)
Q Consensus 168 ~~~l~~~~d~v~~~~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Illlg 247 (394)
++++.+.+|.+.+-.+.+.+.+++.|+++.++.-|.... .. .+.. . ....+++.|++..
T Consensus 121 ~~~~l~~~~~i~vRD~~S~~~l~~~g~~i~~~~D~a~~l----~~------------~~~~---~--~~~~~~~~i~i~~ 179 (298)
T TIGR03609 121 VRRVLRGCRAISVRDAASYRLLKRLGIPAELAADPVWLL----PP------------EPWP---G--GEPLPEPVIVVSL 179 (298)
T ss_pred HHHHHccCCEEEEeCHHHHHHHHHhCCCceEeCChhhhC----CC------------Cccc---c--cccCCCCeEEEEE
Confidence 345677899999998989999988898887777665321 00 0000 0 0112345677654
Q ss_pred CCcHH-HHHhhHHHHHHHHHHhhhhCCCeEEEEEe-CCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHccccee
Q 016179 248 GSRLQ-EVARMLPIFAKTVELLKDSFPELITVIHV-APNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALC 325 (394)
Q Consensus 248 GSrg~-ei~~~l~~ll~a~~~l~~~~~~~~~vi~~-g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~ 325 (394)
-+... + ......+.+++..+.++. +.+++++. ..+.+ .+..++.......+..++.....+++.+.++.||++|+
T Consensus 180 r~~~~~~-~~~~~~l~~~l~~l~~~~-g~~v~~i~~~~~~D-~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~ 256 (298)
T TIGR03609 180 RPWPLLD-VSRLLRLLRALDRLQRDT-GAFVLFLPFQQPQD-LPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIG 256 (298)
T ss_pred CCCCcCC-HHHHHHHHHHHHHHHHhh-CCeEEEEeCCcchh-HHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEE
Confidence 33211 1 112344566667765542 45554433 22222 22233332222212223322213567788999999999
Q ss_pred hhhHHHHHHHHcCCCEEEEE
Q 016179 326 TSGTVAVELQLARLPCVVAY 345 (394)
Q Consensus 326 ~SGt~tlEa~a~G~P~Iv~y 345 (394)
..==+++=|+..|+|+|.+.
T Consensus 257 ~RlH~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 257 MRLHALILAAAAGVPFVALS 276 (298)
T ss_pred echHHHHHHHHcCCCEEEee
Confidence 99777777999999999763
No 127
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0033 Score=64.39 Aligned_cols=121 Identities=16% Similarity=0.189 Sum_probs=86.5
Q ss_pred CChHHHHhhcCCCCC--CcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCE
Q 016179 225 GNSEDFKNKYSVPSG--ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPS 302 (394)
Q Consensus 225 ~~~~~~r~~lgl~~~--~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v 302 (394)
.++..+++++|++.+ .|.+.+. ||-.+ -+-+..+++++..+.+. ..|+++.+.+...+++.+....+.+..++
T Consensus 277 ~nk~~L~~~~gL~~~~~~pl~~~v--sRl~~-QKG~dl~~~~i~~~l~~--~~~~vilG~gd~~le~~~~~la~~~~~~~ 351 (487)
T COG0297 277 ENKVALQERLGLDVDLPGPLFGFV--SRLTA-QKGLDLLLEAIDELLEQ--GWQLVLLGTGDPELEEALRALASRHPGRV 351 (487)
T ss_pred HHHHHHHHHhCCCCCCCCcEEEEe--ecccc-ccchhHHHHHHHHHHHh--CceEEEEecCcHHHHHHHHHHHHhcCceE
Confidence 356677789999954 4555554 67655 34578888999988764 38888888776667666666655555455
Q ss_pred EEecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHH
Q 016179 303 ILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 303 ~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
.+..+|...-....++.||+++..| |.+.+++|..|++-|+ .+++++.
T Consensus 352 ~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv-~~tGGLa 404 (487)
T COG0297 352 LVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIV-RETGGLA 404 (487)
T ss_pred EEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceE-cccCCcc
Confidence 5555553334668899999999999 8888999999996664 6666543
No 128
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=96.94 E-value=0.0046 Score=52.63 Aligned_cols=114 Identities=9% Similarity=-0.000 Sum_probs=67.2
Q ss_pred cEEEEECCCcHHH--HHhh-HHHHHHHHHHhhhhCCCeEEEEEeCCCc-ChHHHHHHHhhcCCCCEEEecCCCcchHHHH
Q 016179 241 TVISLLPGSRLQE--VARM-LPIFAKTVELLKDSFPELITVIHVAPNR-HVENYITGLIQKWPVPSILVPGGSSNLKYDA 316 (394)
Q Consensus 241 ~~IlllgGSrg~e--i~~~-l~~ll~a~~~l~~~~~~~~~vi~~g~~~-~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~ 316 (394)
.++.+.-|+-.-+ |+.. -+ +..+.|.+ +.-.++++..|.+. -..+.........++.+..+.+ .+.+.+.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~---~~~~~L~k-~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f--~psl~e~ 77 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSE---EFLQELQK-RGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDF--SPSLTED 77 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCH---HHHHHHHH-cCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEec--CccHHHH
Confidence 3566777776532 2211 12 22333432 33467888888651 1222222222233444444433 6789999
Q ss_pred HHHcccceehhhHHHH-HHHHcCCCEEEEEcC---ChHHHHHHHhhcc
Q 016179 317 FSASRVALCTSGTVAV-ELQLARLPCVVAYRA---HFLTEWFIRYKAK 360 (394)
Q Consensus 317 ~~~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~---~~~~~~~a~~~vk 360 (394)
++.||++|+-+|+.|. |.+..|+|.|++..- +..-.-+|+.+..
T Consensus 78 I~~AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~ 125 (170)
T KOG3349|consen 78 IRSADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE 125 (170)
T ss_pred HhhccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh
Confidence 9999999999999887 999999999987543 3333334655543
No 129
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=96.94 E-value=0.0029 Score=54.49 Aligned_cols=146 Identities=13% Similarity=0.081 Sum_probs=70.2
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEecChh-hHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHHHHhcCCCE
Q 016179 41 VSGDSIGSRLMSAMKKLAPLPVSFSGVGGSM-MSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHA 119 (394)
Q Consensus 41 ~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~-m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~i~~~~PD~ 119 (394)
+|...++..++++|.+++.+ +.++..+... ......... . . ... ...+.....+....++.+.+++.+||+
T Consensus 12 GG~e~~~~~l~~~l~~~G~~-v~v~~~~~~~~~~~~~~~~~-~--~---~~~-~~~~~~~~~~~~~~~~~~~i~~~~~Di 83 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHE-VTVVSPGVKDPIEEELVKIF-V--K---IPY-PIRKRFLRSFFFMRRLRRLIKKEKPDI 83 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-E-EEEEESS-TTS-SSTEEEE---------TT--SSTSS--HHHHHHHHHHHHHHHHT-SE
T ss_pred ChHHHHHHHHHHHHHHCCCE-EEEEEcCCCccchhhcccee-e--e---eec-ccccccchhHHHHHHHHHHHHHcCCCe
Confidence 44577799999999998774 7777655432 211100000 0 0 000 001111122233456778888999999
Q ss_pred EEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCcccc----c--cCcc-hH-----HHHHHHhhhheeecCcccHH
Q 016179 120 VVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWA----W--KGGE-AR-----LKNLAAFVDHILCILPNEEA 187 (394)
Q Consensus 120 Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa----~--~~g~-~r-----~~~l~~~~d~v~~~~p~~~~ 187 (394)
|++.+++.+.....+. + ++|++.. .|..|. + ..+. .. .+++.+.+|.+++.+++.++
T Consensus 84 Vh~~~~~~~~~~~~~~-~--------~~~~v~~--~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~ 152 (177)
T PF13439_consen 84 VHIHGPPAFWIALLAC-R--------KVPIVYT--IHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKD 152 (177)
T ss_dssp EECCTTHCCCHHHHHH-H--------CSCEEEE--E-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHH
T ss_pred EEecccchhHHHHHhc-c--------CCCEEEE--eCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHH
Confidence 9765543232222222 1 3575322 233331 0 0000 01 11235679999999999999
Q ss_pred HHHhcCCC---eEEEcCCCch
Q 016179 188 ICRLNGLA---ATFVGHPVVE 205 (394)
Q Consensus 188 ~~~~~g~~---~~~vG~Pv~~ 205 (394)
.+.++|++ +.++-|++..
T Consensus 153 ~l~~~~~~~~ki~vI~ngid~ 173 (177)
T PF13439_consen 153 ELIKFGIPPEKIHVIYNGIDT 173 (177)
T ss_dssp HHHHHT--SS-EEE----B-C
T ss_pred HHHHhCCcccCCEEEECCccH
Confidence 98888864 5666666543
No 130
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.88 E-value=0.015 Score=48.73 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=48.5
Q ss_pred eEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChh--h-HhccCccccccCcceeccHHHhhhhHHHHHHHHHHHH
Q 016179 33 RVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSM--M-SEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETI 109 (394)
Q Consensus 33 kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~--m-~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~ 109 (394)
||++++...++|.+ .++++|++++.+ +.++...++. . ...++... .++. + .+......+ +.++.
T Consensus 1 KIl~i~~~~~~~~~--~~~~~L~~~g~~-V~ii~~~~~~~~~~~~~~i~~~----~~~~-~----~k~~~~~~~-~~~l~ 67 (139)
T PF13477_consen 1 KILLIGNTPSTFIY--NLAKELKKRGYD-VHIITPRNDYEKYEIIEGIKVI----RLPS-P----RKSPLNYIK-YFRLR 67 (139)
T ss_pred CEEEEecCcHHHHH--HHHHHHHHCCCE-EEEEEcCCCchhhhHhCCeEEE----EecC-C----CCccHHHHH-HHHHH
Confidence 68888888877654 788889887664 8877775432 1 23333221 1110 0 111122233 34788
Q ss_pred HHHHhcCCCEEEEeC
Q 016179 110 EAALLFRPHAVVTVD 124 (394)
Q Consensus 110 ~~i~~~~PD~Vi~~~ 124 (394)
+++++++||+|++.+
T Consensus 68 k~ik~~~~DvIh~h~ 82 (139)
T PF13477_consen 68 KIIKKEKPDVIHCHT 82 (139)
T ss_pred HHhccCCCCEEEEec
Confidence 999999999999875
No 131
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=96.85 E-value=0.29 Score=45.19 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=79.7
Q ss_pred HHHHHHhhhheeecCcccHHHHHhcCC--CeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEE
Q 016179 168 LKNLAAFVDHILCILPNEEAICRLNGL--AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL 245 (394)
Q Consensus 168 ~~~l~~~~d~v~~~~p~~~~~~~~~g~--~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~Ill 245 (394)
.+++.+.+|.+.+-.+.+.+.+.+.|+ ++.+++-|..- +... ........ .....+.+
T Consensus 121 ~~~~l~~~~~i~vRD~~S~~~l~~~g~~~~~~~~~D~af~-l~~~---------------~~~~~~~~----~~~~~~~~ 180 (286)
T PF04230_consen 121 LRRILSKADYISVRDEYSYELLKKLGISGNVKLVPDPAFL-LPPS---------------YPDEDKSK----PKRNYISV 180 (286)
T ss_pred HHHHHhCCCEEEECCHHHHHHHHHcCCCCCcEEEeCchhh-cCcc---------------cccccccc----cccceeee
Confidence 345566688899988888888888898 78888888641 1100 00000000 11112222
Q ss_pred ECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc-ChHHHHHHHh--hcCCCCEEEecC-CCcchHHHHHHHcc
Q 016179 246 LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR-HVENYITGLI--QKWPVPSILVPG-GSSNLKYDAFSASR 321 (394)
Q Consensus 246 lgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~-~~~~~l~~~~--~~~~~~v~~~~g-~~~~~~~~~~~~AD 321 (394)
...+.. .-+.....+.+.+..+.+......++....... .......... .....++..... ....+..++++.+|
T Consensus 181 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (286)
T PF04230_consen 181 SNSPSR-NNEEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQAD 259 (286)
T ss_pred ccccch-hhhhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCC
Confidence 222221 111122334445555554322333333332211 1111111111 111112333322 11467889999999
Q ss_pred cceehhhHHHHHHHHcCCCEEEE
Q 016179 322 VALCTSGTVAVELQLARLPCVVA 344 (394)
Q Consensus 322 l~I~~SGt~tlEa~a~G~P~Iv~ 344 (394)
++|+..==+++=|+++|+|+|.+
T Consensus 260 ~~Is~RlH~~I~a~~~g~P~i~i 282 (286)
T PF04230_consen 260 LVISMRLHGAILALSLGVPVIAI 282 (286)
T ss_pred EEEecCCHHHHHHHHcCCCEEEE
Confidence 99999966666789999999976
No 132
>PLN02448 UDP-glycosyltransferase family protein
Probab=96.84 E-value=0.45 Score=48.80 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=61.5
Q ss_pred CCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHH
Q 016179 237 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 316 (394)
Q Consensus 237 ~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~ 316 (394)
.+++++|.+.-||...--.+.+..+.++++. .+..|+++..+.. .. +.+... .+..+. +.. .-.++
T Consensus 271 ~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~-----~~~~~lw~~~~~~--~~-~~~~~~---~~~~v~-~w~--pQ~~i 336 (459)
T PLN02448 271 QPEGSVLYVSLGSFLSVSSAQMDEIAAGLRD-----SGVRFLWVARGEA--SR-LKEICG---DMGLVV-PWC--DQLKV 336 (459)
T ss_pred CCCCceEEEeecccccCCHHHHHHHHHHHHh-----CCCCEEEEEcCch--hh-HhHhcc---CCEEEe-ccC--CHHHH
Confidence 3456789998888743111123334444433 2467887654321 11 222221 134444 221 34568
Q ss_pred HHHccc--ceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhcc
Q 016179 317 FSASRV--ALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAK 360 (394)
Q Consensus 317 ~~~ADl--~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~vk 360 (394)
++..++ +|+=.|..|. |++.+|+|+|+ .+...--+..++++++
T Consensus 337 L~h~~v~~fvtHgG~nS~~eal~~GvP~l~-~P~~~DQ~~na~~v~~ 382 (459)
T PLN02448 337 LCHSSVGGFWTHCGWNSTLEAVFAGVPMLT-FPLFWDQPLNSKLIVE 382 (459)
T ss_pred hccCccceEEecCchhHHHHHHHcCCCEEe-ccccccchhhHHHHHH
Confidence 877776 9999997665 99999999986 5554444444666653
No 133
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=96.58 E-value=0.014 Score=54.26 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=59.5
Q ss_pred CCCCcEEEEECCCcHHHHHhhHH--HHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC-CEEEecCCCcchH
Q 016179 237 PSGATVISLLPGSRLQEVARMLP--IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGSSNLK 313 (394)
Q Consensus 237 ~~~~~~IlllgGSrg~ei~~~l~--~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~-~v~~~~g~~~~~~ 313 (394)
..+++.|++.||+... .+..| .+.+.++.|.+. ..++++.+++.+..++..+...+.... .+.+.......+.
T Consensus 102 ~~~~~~i~i~~~a~~~--~k~wp~e~~~~l~~~l~~~--~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 102 SKDKPYIGINPGASWP--SKRWPAEKWAELIERLKER--GYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp -TTSSEEEEE---SSG--GGS--HHHHHHHHHHHCCC--T-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred hccCCeEEEeecCCCc--cccCCHHHHHHHHHHHHhh--CceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHH
Confidence 3567889999998873 22334 366677777654 267777776533122333333332221 2333321114677
Q ss_pred HHHHHHcccceehhhHHHHHHHHcCCCEEEEEcCChHH
Q 016179 314 YDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 314 ~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
..+++.||++|+.-.+.+==|+++|+|+|.+|......
T Consensus 178 ~ali~~a~~~I~~Dtg~~HlA~a~~~p~v~lfg~t~~~ 215 (247)
T PF01075_consen 178 AALISRADLVIGNDTGPMHLAAALGTPTVALFGPTNPE 215 (247)
T ss_dssp HHHHHTSSEEEEESSHHHHHHHHTT--EEEEESSS-HH
T ss_pred HHHHhcCCEEEecCChHHHHHHHHhCCEEEEecCCCHH
Confidence 88999999999977555434999999999888555433
No 134
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=96.53 E-value=0.69 Score=45.03 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=45.1
Q ss_pred CCeEEEEEeC-CCcChHHHHHHH---hhcCCC--CEEEecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCE
Q 016179 273 PELITVIHVA-PNRHVENYITGL---IQKWPV--PSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPC 341 (394)
Q Consensus 273 ~~~~~vi~~g-~~~~~~~~l~~~---~~~~~~--~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~ 341 (394)
++++++++++ .|++.+++++.+ ...+.+ ++.+...-..++.-+++..|-+.|-.= |-+.+|.||+|+=.
T Consensus 304 ~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIp 383 (465)
T KOG1387|consen 304 SPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIP 383 (465)
T ss_pred CCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceE
Confidence 4577777776 233333343322 222222 344432111467888888887777654 78888999999977
Q ss_pred EEEEcCCh
Q 016179 342 VVAYRAHF 349 (394)
Q Consensus 342 Iv~y~~~~ 349 (394)
|+-.-.++
T Consensus 384 i~h~SgGP 391 (465)
T KOG1387|consen 384 IVHNSGGP 391 (465)
T ss_pred EEeCCCCC
Confidence 76433333
No 135
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=96.49 E-value=0.0097 Score=53.39 Aligned_cols=146 Identities=15% Similarity=0.160 Sum_probs=64.9
Q ss_pred ceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecC----hhhHhccCccccccCcceeccHHHhhhhHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGG----SMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLK 106 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg----~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~ 106 (394)
..|.|=+.+ -|.+. +..|+++|++.+|+ ..++-... ..+.+..+... .......+ +. -.
T Consensus 22 ~~iWiHa~S-vGE~~a~~~Li~~l~~~~p~-~~illT~~T~tg~~~~~~~~~~~---v~~~~~P~-D~----------~~ 85 (186)
T PF04413_consen 22 PLIWIHAAS-VGEVNAARPLIKRLRKQRPD-LRILLTTTTPTGREMARKLLPDR---VDVQYLPL-DF----------PW 85 (186)
T ss_dssp T-EEEE-SS-HHHHHHHHHHHHHHTT---T-S-EEEEES-CCHHHHHHGG-GGG----SEEE----SS----------HH
T ss_pred CcEEEEECC-HHHHHHHHHHHHHHHHhCCC-CeEEEEecCCchHHHHHHhCCCC---eEEEEeCc-cC----------HH
Confidence 345555544 47777 77899999998886 76554332 22222211110 00000000 11 01
Q ss_pred HHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEee-----cCccccccCcchHHHHHHHhhhheeec
Q 016179 107 ETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYV-----APSFWAWKGGEARLKNLAAFVDHILCI 181 (394)
Q Consensus 107 ~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv-----~~~~wa~~~g~~r~~~l~~~~d~v~~~ 181 (394)
-+.+.++..+||++|.+...-.| .+...++++ ++|+++--- +...|.|.++ ..+.+-+..|.+++.
T Consensus 86 ~~~rfl~~~~P~~~i~~EtElWP-nll~~a~~~------~ip~~LvNarls~~s~~~~~~~~~--~~r~~l~~f~~i~aq 156 (186)
T PF04413_consen 86 AVRRFLDHWRPDLLIWVETELWP-NLLREAKRR------GIPVVLVNARLSERSFRRYRRFPF--LFRPLLSRFDRILAQ 156 (186)
T ss_dssp HHHHHHHHH--SEEEEES----H-HHHHH-----------S-EEEEEE--------------H--HHHHHGGG-SEEEES
T ss_pred HHHHHHHHhCCCEEEEEccccCH-HHHHHHhhc------CCCEEEEeeeeccccchhhhhhHH--HHHHHHHhCCEEEEC
Confidence 13466778899999999753334 344455554 789643210 1112333221 233455668999999
Q ss_pred CcccHHHHHhcCCC---eEEEcCC
Q 016179 182 LPNEEAICRLNGLA---ATFVGHP 202 (394)
Q Consensus 182 ~p~~~~~~~~~g~~---~~~vG~P 202 (394)
++...+.|.+.|++ +.++||-
T Consensus 157 s~~da~r~~~lG~~~~~v~v~Gnl 180 (186)
T PF04413_consen 157 SEADAERFRKLGAPPERVHVTGNL 180 (186)
T ss_dssp SHHHHHHHHTTT-S--SEEE---G
T ss_pred CHHHHHHHHHcCCCcceEEEeCcc
Confidence 99999999999986 7889974
No 136
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=96.43 E-value=0.025 Score=58.24 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=74.3
Q ss_pred HHHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCC----eEEEEEeCCCc----C---hHHHHHHHhh
Q 016179 228 EDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPNR----H---VENYITGLIQ 296 (394)
Q Consensus 228 ~~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~----~~~vi~~g~~~----~---~~~~l~~~~~ 296 (394)
+++|++++ ++++|+-. +|-...|. ++..++|++++.+++|+ +.++.++.++. + +.+.+++...
T Consensus 276 ~~lr~~~~---~~kiIl~V--DRLDy~KG-I~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~ 349 (487)
T TIGR02398 276 ERIRSELA---GVKLILSA--ERVDYTKG-ILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVG 349 (487)
T ss_pred HHHHHHcC---CceEEEEe--cccccccC-HHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHH
Confidence 45677776 45555433 67655554 67788999998888886 57777776531 1 2222333222
Q ss_pred c----CC----CCEEEecCCC-cchHHHHHHHcccceehh-----hHHHHHHHHcCC----CEEEEEcCChHH
Q 016179 297 K----WP----VPSILVPGGS-SNLKYDAFSASRVALCTS-----GTVAVELQLARL----PCVVAYRAHFLT 351 (394)
Q Consensus 297 ~----~~----~~v~~~~g~~-~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~----P~Iv~y~~~~~~ 351 (394)
. ++ .++.++.++. .++...+|++||+++..| +.++.|.++|+. |.|+ ....+..
T Consensus 350 ~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-SefaGaa 421 (487)
T TIGR02398 350 RINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-SEFAGAA 421 (487)
T ss_pred HHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-eccccch
Confidence 1 11 1355554443 577889999999999999 456679999988 5444 5554433
No 137
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=96.16 E-value=0.017 Score=54.80 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhhCCCeEEEEEeCCCcC---hHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHH
Q 016179 260 IFAKTVELLKDSFPELITVIHVAPNRH---VENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQL 336 (394)
Q Consensus 260 ~ll~a~~~l~~~~~~~~~vi~~g~~~~---~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a 336 (394)
.+.+.++.+.+..|+.++++=.+|... ....+.+... ..++.++.. .-++++++..||.++|-++|+-+||++
T Consensus 141 ~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~Ll~~s~~VvtinStvGlEAll 216 (269)
T PF05159_consen 141 DFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN--LPNVVIIDD--DVNLYELLEQSDAVVTINSTVGLEALL 216 (269)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc--CCCeEEECC--CCCHHHHHHhCCEEEEECCHHHHHHHH
Confidence 355566666666788998887776211 1122222111 123444433 247999999999999999999999999
Q ss_pred cCCCEEEE
Q 016179 337 ARLPCVVA 344 (394)
Q Consensus 337 ~G~P~Iv~ 344 (394)
.|+|+++.
T Consensus 217 ~gkpVi~~ 224 (269)
T PF05159_consen 217 HGKPVIVF 224 (269)
T ss_pred cCCceEEe
Confidence 99999875
No 138
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.03 Score=57.47 Aligned_cols=116 Identities=11% Similarity=0.188 Sum_probs=73.1
Q ss_pred HHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCC-CcChHHHHHHHhhcCCC---CEEEe
Q 016179 230 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAP-NRHVENYITGLIQKWPV---PSILV 305 (394)
Q Consensus 230 ~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~-~~~~~~~l~~~~~~~~~---~v~~~ 305 (394)
.|+++|+|+|..|.+.+ ..... +.|.+.+.--+|.+..|+-.+++-+++ +++..+.++...+..|+ +.++.
T Consensus 420 sR~~lglp~~avVf~c~--~n~~K---~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~ 494 (620)
T COG3914 420 SRAQLGLPEDAVVFCCF--NNYFK---ITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFL 494 (620)
T ss_pred chhhcCCCCCeEEEEec--CCccc---CCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeec
Confidence 45789999886544443 33322 345555544455556688777666653 34455666766666554 35555
Q ss_pred cCCCcchHHHHHHHcccceehh---hH-HHHHHHHcCCCEEEEEcCChHH
Q 016179 306 PGGSSNLKYDAFSASRVALCTS---GT-VAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 306 ~g~~~~~~~~~~~~ADl~I~~S---Gt-~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
+....+++.+-+.-||+++=.= |+ +++|++-+|+|++ +..+..+-
T Consensus 495 p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVl-T~~G~~Fa 543 (620)
T COG3914 495 PPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVL-TRVGEQFA 543 (620)
T ss_pred CCCCCHHHHHhhchhheeeecccCCCccchHHHHHhcCcee-eeccHHHH
Confidence 4433566778899999999753 44 4459999999977 45554443
No 139
>PLN03007 UDP-glucosyltransferase family protein
Probab=96.12 E-value=1.2 Score=46.10 Aligned_cols=112 Identities=14% Similarity=-0.002 Sum_probs=60.0
Q ss_pred CCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcCh-------HHHHHHHhhcCCCCEEEecCCC
Q 016179 237 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV-------ENYITGLIQKWPVPSILVPGGS 309 (394)
Q Consensus 237 ~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~-------~~~l~~~~~~~~~~v~~~~g~~ 309 (394)
.+++.+|.+.=||...--. +.+.+.+..|.. .+..|+++...+... -+-+++... +.++.+. +.
T Consensus 282 ~~~~svvyvsfGS~~~~~~---~~~~~~~~~l~~--~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~--~~g~~v~-~w- 352 (482)
T PLN03007 282 KKPDSVIYLSFGSVASFKN---EQLFEIAAGLEG--SGQNFIWVVRKNENQGEKEEWLPEGFEERTK--GKGLIIR-GW- 352 (482)
T ss_pred CCCCceEEEeecCCcCCCH---HHHHHHHHHHHH--CCCCEEEEEecCCcccchhhcCCHHHHHHhc--cCCEEEe-cC-
Confidence 3456688887777642111 223333333433 246788877642110 001111111 2234433 22
Q ss_pred cchHHHHHHHccc--ceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 310 SNLKYDAFSASRV--ALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 310 ~~~~~~~~~~ADl--~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
. .-.++++.+++ +|+=.|..++ |++.+|+|+|+ .+...--+.-+++++
T Consensus 353 ~-PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~-~P~~~DQ~~na~~~~ 403 (482)
T PLN03007 353 A-PQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVT-WPVGAEQFYNEKLVT 403 (482)
T ss_pred C-CHHHHhccCccceeeecCcchHHHHHHHcCCCeee-ccchhhhhhhHHHHH
Confidence 1 23578888765 9999997665 99999999986 454433333356544
No 140
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=96.08 E-value=1.7 Score=43.17 Aligned_cols=155 Identities=10% Similarity=0.018 Sum_probs=76.7
Q ss_pred HHHhhhheeecCcccHHHHHhcCCCeEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCCc
Q 016179 171 LAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSR 250 (394)
Q Consensus 171 l~~~~d~v~~~~p~~~~~~~~~g~~~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGSr 250 (394)
..+.|..+.+-.|.+.+.++..|+++..+.-|...-... . .+.. .. ......+++++.. |
T Consensus 149 ~~~~~s~i~vRD~~S~~llk~~gi~a~l~~D~Af~L~~~---~-----------~~~~---~~-~~~~~~~~~~i~l--r 208 (385)
T COG2327 149 VLGGCSAISVRDPVSYELLKQLGINARLVTDPAFLLPAS---S-----------QNAT---AS-DVEAREKTVAITL--R 208 (385)
T ss_pred HhcCCcEEEEecHHhHHHHHHcCCCeEeecCcceecccc---c-----------cccc---cc-ccccccceEEEEe--c
Confidence 456678888888999999999999988776554332110 0 0000 00 0112334555542 2
Q ss_pred H-----HHHHhhHHHHHHHHHHh-hhhCCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEEEecCCCcchHHHHHHHccc
Q 016179 251 L-----QEVARMLPIFAKTVELL-KDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGSSNLKYDAFSASRV 322 (394)
Q Consensus 251 g-----~ei~~~l~~ll~a~~~l-~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~ADl 322 (394)
+ ..-..++...-+++..+ .+......+......+.+.....+.+..... .++++..+...+++...++.+|+
T Consensus 209 ~~~~~~t~~~~~~~~v~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl 288 (385)
T COG2327 209 GLHPDNTAQRSILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDL 288 (385)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHhhhcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCce
Confidence 2 00000112222333332 1111233333333222222222233322221 24554443201345668899999
Q ss_pred ceehhhHHHHHHHHcCCCEEEEE
Q 016179 323 ALCTSGTVAVELQLARLPCVVAY 345 (394)
Q Consensus 323 ~I~~SGt~tlEa~a~G~P~Iv~y 345 (394)
+|+.==-+++=++++|+|+|.++
T Consensus 289 ~Vg~R~HsaI~al~~g~p~i~i~ 311 (385)
T COG2327 289 IVGMRLHSAIMALAFGVPAIAIA 311 (385)
T ss_pred EEeehhHHHHHHHhcCCCeEEEe
Confidence 88765556667999999999773
No 141
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=95.77 E-value=0.027 Score=61.20 Aligned_cols=100 Identities=22% Similarity=0.227 Sum_probs=61.6
Q ss_pred CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCC----eEEEEEeCCC----cC---hHHHHHHHhhc----CC---
Q 016179 238 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPN----RH---VENYITGLIQK----WP--- 299 (394)
Q Consensus 238 ~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~----~~~vi~~g~~----~~---~~~~l~~~~~~----~~--- 299 (394)
+++++|+.+ +|-...| .++.+++|++.+.+.+|+ +++++++++. ++ +++.+++...+ ++
T Consensus 263 ~~~~~il~V--gRl~~~K-gi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~ 339 (726)
T PRK14501 263 RGRKIILSI--DRLDYTK-GIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVD 339 (726)
T ss_pred CCCEEEEEe--cCccccc-CHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 345555544 4655444 478889999998777775 5777775432 11 12222222111 11
Q ss_pred -CCEEEecCCC-cchHHHHHHHcccceehh-----hHHHHHHHHcCCC
Q 016179 300 -VPSILVPGGS-SNLKYDAFSASRVALCTS-----GTVAVELQLARLP 340 (394)
Q Consensus 300 -~~v~~~~g~~-~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P 340 (394)
.++.++.++. .+++.++|++||+++..| |.+.+|+++||+|
T Consensus 340 ~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~ 387 (726)
T PRK14501 340 WTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTD 387 (726)
T ss_pred cceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCC
Confidence 1244443332 578999999999999999 5566799999775
No 142
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=95.69 E-value=0.15 Score=53.10 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=62.9
Q ss_pred CcEEEEECCCcHH--HH-HhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHH
Q 016179 240 ATVISLLPGSRLQ--EV-ARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 316 (394)
Q Consensus 240 ~~~IlllgGSrg~--ei-~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~ 316 (394)
+++|++.-||-.. .. .+.+..++++++.+ + .++++..++.. . . .+.+.++.+.... .-.++
T Consensus 296 ~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l----~-~~viw~~~~~~-~-~------~~~p~Nv~i~~w~---Pq~~l 359 (507)
T PHA03392 296 NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL----P-YNVLWKYDGEV-E-A------INLPANVLTQKWF---PQRAV 359 (507)
T ss_pred CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC----C-CeEEEEECCCc-C-c------ccCCCceEEecCC---CHHHH
Confidence 3688888888532 11 22345566666543 3 57888776421 1 1 1123356655321 34577
Q ss_pred H--HHcccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 317 F--SASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 317 ~--~~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
+ ..+|++|+=.|..|+ ||+.+|+|+|++ +.-.--+.-|+++.
T Consensus 360 L~hp~v~~fItHGG~~s~~Eal~~GvP~v~i-P~~~DQ~~Na~rv~ 404 (507)
T PHA03392 360 LKHKNVKAFVTQGGVQSTDEAIDALVPMVGL-PMMGDQFYNTNKYV 404 (507)
T ss_pred hcCCCCCEEEecCCcccHHHHHHcCCCEEEC-CCCccHHHHHHHHH
Confidence 8 569999999998887 999999999975 44333333455554
No 143
>PLN00414 glycosyltransferase family protein
Probab=95.67 E-value=3 Score=42.67 Aligned_cols=117 Identities=13% Similarity=-0.019 Sum_probs=61.5
Q ss_pred hhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCC---cChH----HHHHHHhhcCCCCEEE
Q 016179 232 NKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN---RHVE----NYITGLIQKWPVPSIL 304 (394)
Q Consensus 232 ~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~---~~~~----~~l~~~~~~~~~~v~~ 304 (394)
+=|+-.++..+|.+.=||...-- -..+.+.+..|.. .+..|+++.-+. .+.. +-+++..++-+ .+
T Consensus 244 ~WLD~q~~~sVvyvsfGS~~~~~---~~q~~e~a~gL~~--s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g---~v 315 (446)
T PLN00414 244 HWLNGFEPGSVVFCAFGTQFFFE---KDQFQEFCLGMEL--TGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG---IV 315 (446)
T ss_pred HHHhcCCCCceEEEeecccccCC---HHHHHHHHHHHHH--cCCCeEEEEecCCCcccchhhCChhHHHHhcCCC---eE
Confidence 33444456679999778876311 1234455554443 244555554221 0100 11122222222 22
Q ss_pred ecCCCcchHHHHHHHc--ccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 305 VPGGSSNLKYDAFSAS--RVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 305 ~~g~~~~~~~~~~~~A--Dl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
+.++. .-.++++.. +++||=.|-.+. |++.+|+|+|. .+...--+..+++++
T Consensus 316 v~~w~--PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~-~P~~~dQ~~na~~~~ 370 (446)
T PLN00414 316 WEGWV--EQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVF-IPQLADQVLITRLLT 370 (446)
T ss_pred EeccC--CHHHHhcCCccceEEecCchhHHHHHHHcCCCEEe-cCcccchHHHHHHHH
Confidence 32321 235688666 779999997665 99999999986 455433333455553
No 144
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=4.2 Score=39.81 Aligned_cols=301 Identities=15% Similarity=0.147 Sum_probs=140.1
Q ss_pred CceE-EEEeCC--chHHH--HHHHHHHHHHhcCCCCeEEEEecCh-hhHhccCc---cccccCcceeccHH-H----hhh
Q 016179 31 ELRV-FIVAGE--VSGDS--IGSRLMSAMKKLAPLPVSFSGVGGS-MMSEQGMK---SLFPMEDIAVMGIW-E----LLP 96 (394)
Q Consensus 31 ~~kI-lI~aG~--~sGh~--~a~~l~~~L~~~~~~~~~~~g~gg~-~m~~~g~~---~~~~~~~l~~~G~~-~----~l~ 96 (394)
++++ +++-|. .|=-+ ||..+++ .+-+ ++++|.+++ ..++..-. .++.+..+++.+.. . .+|
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~----~gf~-VdliGy~~s~p~e~l~~hprI~ih~m~~l~~~~~~p~~~~l~lK 86 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAK----LGFQ-VDLIGYVESIPLEELLNHPRIRIHGMPNLPFLQGGPRVLFLPLK 86 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHH----cCCe-EEEEEecCCCChHHHhcCCceEEEeCCCCcccCCCchhhhhHHH
Confidence 3444 445555 33333 3666654 2343 889988764 22221111 12344444443322 1 222
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecC--c-cccccCcc--------
Q 016179 97 HIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAP--S-FWAWKGGE-------- 165 (394)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~--~-~wa~~~g~-------- 165 (394)
.+..+... +..++....||.++.---|+.|..+++.+-.... +.+.+++.+.- + .-+...|+
T Consensus 87 vf~Qfl~L---l~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~----~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~ 159 (444)
T KOG2941|consen 87 VFWQFLSL---LWALFVLRPPDIILVQNPPSIPTLIVCVLYSILT----GAKFIIDWHNYGYSLQLKLKLGFQHPLVRLV 159 (444)
T ss_pred HHHHHHHH---HHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHh----cceEEEEehhhHHHHHHHhhcCCCCchHHHH
Confidence 22222222 2233345678877755457777766665543211 45656664211 0 00111110
Q ss_pred hHHHH-HHHhhhheeecCcccHHHH-HhcCC-CeEEE-------cCCCch---hhhhhcCC----CCCCCcccccCCChH
Q 016179 166 ARLKN-LAAFVDHILCILPNEEAIC-RLNGL-AATFV-------GHPVVE---DCLELNLG----KGPEPCELKMEGNSE 228 (394)
Q Consensus 166 ~r~~~-l~~~~d~v~~~~p~~~~~~-~~~g~-~~~~v-------G~Pv~~---~~~~~~~~----~~~~~~~~~~~~~~~ 228 (394)
++..+ +.|.+|.-+|+....++.+ ++.|+ ++.++ +.|+.. .|.....+ +.+. .+- ...++.
T Consensus 160 ~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~-~q~-~~~~~t 237 (444)
T KOG2941|consen 160 RWLEKYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRARE-PQD-KALERT 237 (444)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHhcCCceeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcc-ccc-chhhhh
Confidence 01122 3778888889988888665 56785 44322 222211 11110000 0000 000 000111
Q ss_pred HHHhhc-----CCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhh-------CCCeEEEEEeCCCcChHHHHHHHhh
Q 016179 229 DFKNKY-----SVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS-------FPELITVIHVAPNRHVENYITGLIQ 296 (394)
Q Consensus 229 ~~r~~l-----gl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~-------~~~~~~vi~~g~~~~~~~~l~~~~~ 296 (394)
.+-++. ...++.|.+++.--|-... +-...+++|+....++ .|++ +.+++|..+.-+.+ .+.+.
T Consensus 238 af~~k~~s~~v~~~~~~pallvsSTswTpD--Edf~ILL~AL~~y~~~~~~~~~~lP~l-lciITGKGPlkE~Y-~~~I~ 313 (444)
T KOG2941|consen 238 AFTKKDASGDVQLLPERPALLVSSTSWTPD--EDFGILLEALVIYEEQLYDKTHNLPSL-LCIITGKGPLKEKY-SQEIH 313 (444)
T ss_pred hHhhhcccchhhhccCCCeEEEecCCCCCc--ccHHHHHHHHHhhhhhhhhccCCCCcE-EEEEcCCCchhHHH-HHHHH
Confidence 111222 2234667788864444321 1245677777733211 2333 35566655533333 33344
Q ss_pred cCCC-CEEEecCCC-cchHHHHHHHccccee----hhhH---H-HHHHHHcCCCEEEEEcCChH
Q 016179 297 KWPV-PSILVPGGS-SNLKYDAFSASRVALC----TSGT---V-AVELQLARLPCVVAYRAHFL 350 (394)
Q Consensus 297 ~~~~-~v~~~~g~~-~~~~~~~~~~ADl~I~----~SGt---~-tlEa~a~G~P~Iv~y~~~~~ 350 (394)
+.+. ++.+..... .+|-+.+++.||+.|| .||. + .+..-.||+|++. +....+
T Consensus 314 ~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA-~~fkcl 376 (444)
T KOG2941|consen 314 EKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA-VNFKCL 376 (444)
T ss_pred HhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceee-ecchhH
Confidence 3332 344331110 4688999999999998 4564 3 3488999999775 443333
No 145
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.74 E-value=0.48 Score=44.15 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=65.5
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCC--CCEEEecCCCc-chHHHHH
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGSS-NLKYDAF 317 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~--~~v~~~~g~~~-~~~~~~~ 317 (394)
..++.+| |-.+. +..+.+++++..+....++.++++++..... .+.+.....+.. .++.+. |+.. +++.+++
T Consensus 200 ~~i~~~g--~~~~~-k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~v~~~-g~~~~~~~~~~~ 274 (381)
T COG0438 200 FVVLYVG--RLDPE-KGLDLLIEAAAKLKKRGPDIKLVIVGDGPER-REELEKLAKKLGLEDNVKFL-GYVPDEELAELL 274 (381)
T ss_pred eEEEEee--ccChh-cCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc-HHHHHHHHHHhCCCCcEEEe-cccCHHHHHHHH
Confidence 4555553 33232 3467788888888766555777777765431 112233333332 245553 4322 4788899
Q ss_pred HHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 318 SASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 318 ~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
+.||+++..| |...+|++++|+|+|. ...+.....+
T Consensus 275 ~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~-~~~~~~~e~~ 315 (381)
T COG0438 275 ASADVFVLPSLSEGFGLVLLEAMAAGTPVIA-SDVGGIPEVV 315 (381)
T ss_pred HhCCEEEeccccccchHHHHHHHhcCCcEEE-CCCCChHHHh
Confidence 9999999995 3455699999999875 5554444333
No 146
>PLN02208 glycosyltransferase family protein
Probab=94.37 E-value=6.9 Score=40.00 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=27.1
Q ss_pred CceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEE
Q 016179 31 ELRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSG 66 (394)
Q Consensus 31 ~~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g 66 (394)
+..|++..--..||+. ...+++.|..++.. ++|+.
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~-VT~vt 39 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHR-VTFLL 39 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCE-EEEEe
Confidence 4568888888889999 88999999877543 55544
No 147
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=93.89 E-value=0.58 Score=45.06 Aligned_cols=108 Identities=8% Similarity=-0.013 Sum_probs=66.0
Q ss_pred EECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCC---CcChHHHHHHHhhc-CC-CCEEEecCCC-cchHHHHHH
Q 016179 245 LLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAP---NRHVENYITGLIQK-WP-VPSILVPGGS-SNLKYDAFS 318 (394)
Q Consensus 245 llgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~---~~~~~~~l~~~~~~-~~-~~v~~~~g~~-~~~~~~~~~ 318 (394)
++-|..|..-|+++. +++++.+.. ..+++++++.+- |..+.+.+++...+ .+ .++.++..+- .+|--++++
T Consensus 149 IlvGNSgd~SN~Hie-~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~ 225 (322)
T PRK02797 149 ILVGNSGDRSNRHIE-ALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLR 225 (322)
T ss_pred EEEeCCCCCcccHHH-HHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHH
Confidence 333777776777654 334444332 357999999875 33344444443333 23 2565553321 367778999
Q ss_pred Hcccceehh----hHHHH-HHHHcCCCEEEEEcCChHHHHHHH
Q 016179 319 ASRVALCTS----GTVAV-ELQLARLPCVVAYRAHFLTEWFIR 356 (394)
Q Consensus 319 ~ADl~I~~S----Gt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~ 356 (394)
.+|+++..- |-.|+ =+..+|+|+++ .+-+++...+..
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l-~r~n~fwqdl~e 267 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCLLIQLGKPVVL-SRDNPFWQDLTE 267 (322)
T ss_pred hCCEEEEeechhhHHhHHHHHHHCCCcEEE-ecCCchHHHHHh
Confidence 999999855 44444 68999999886 566665555544
No 148
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=93.80 E-value=0.74 Score=48.86 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=75.1
Q ss_pred CCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhh--hC--CCeEEEEEeCCCcC------hHHHHHHHhhc--CCCCEE
Q 016179 236 VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKD--SF--PELITVIHVAPNRH------VENYITGLIQK--WPVPSI 303 (394)
Q Consensus 236 l~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~--~~--~~~~~vi~~g~~~~------~~~~l~~~~~~--~~~~v~ 303 (394)
++++.+++.+. +|-++-|+. ..+++.+.++.+ .. .++|||+.+-+.+. +.+.+.+..++ .+.++.
T Consensus 385 ~dpd~~~ig~v--~Rl~~yKr~-dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~ 461 (601)
T TIGR02094 385 LDPDVLTIGFA--RRFATYKRA-DLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIV 461 (601)
T ss_pred cCCCCcEEEEE--EcchhhhhH-HHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEE
Confidence 45667777776 788888873 457777777753 21 35898888765443 44445444444 344677
Q ss_pred EecCCCcchHHHHHHHccccee---h----hhHHHHHHHHcCCCEEEEEc
Q 016179 304 LVPGGSSNLKYDAFSASRVALC---T----SGTVAVELQLARLPCVVAYR 346 (394)
Q Consensus 304 ~~~g~~~~~~~~~~~~ADl~I~---~----SGt~tlEa~a~G~P~Iv~y~ 346 (394)
++.+|...-...++++||+.+. + |||+.+=++..|.+.+-+..
T Consensus 462 f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~D 511 (601)
T TIGR02094 462 FLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILD 511 (601)
T ss_pred EEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeeccc
Confidence 8878743335678999999998 2 59999999999999887655
No 149
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=93.41 E-value=0.36 Score=49.15 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehh-----hHHHHHH
Q 016179 260 IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVEL 334 (394)
Q Consensus 260 ~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa 334 (394)
..+++++.+.+..|+++|=+ ++..+ ....+.++ .++ .++.+++++...++.+++..||+.+..| |-+..||
T Consensus 292 ~~I~~i~~Lv~~lPd~~f~I-ga~te-~s~kL~~L-~~y-~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA 367 (438)
T TIGR02919 292 DQIEHLEEIVQALPDYHFHI-AALTE-MSSKLMSL-DKY-DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRA 367 (438)
T ss_pred HHHHHHHHHHHhCCCcEEEE-EecCc-ccHHHHHH-Hhc-CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHH
Confidence 35567778877889999887 44332 23445554 444 3788888874348999999999999988 3344599
Q ss_pred HHcCCCEEEEEcC
Q 016179 335 QLARLPCVVAYRA 347 (394)
Q Consensus 335 ~a~G~P~Iv~y~~ 347 (394)
...|+|++- |..
T Consensus 368 ~~~G~pI~a-fd~ 379 (438)
T TIGR02919 368 FEYNLLILG-FEE 379 (438)
T ss_pred HHcCCcEEE-Eec
Confidence 999999774 543
No 150
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=92.64 E-value=4.9 Score=35.93 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=80.4
Q ss_pred ceEEEEeCC-----chH-HHHHHHHHHHHHhcCCCCeEEEEecChh----hHhccCccc-cccCcceeccHHHhhhhHHH
Q 016179 32 LRVFIVAGE-----VSG-DSIGSRLMSAMKKLAPLPVSFSGVGGSM----MSEQGMKSL-FPMEDIAVMGIWELLPHIYK 100 (394)
Q Consensus 32 ~kIlI~aG~-----~sG-h~~a~~l~~~L~~~~~~~~~~~g~gg~~----m~~~g~~~~-~~~~~l~~~G~~~~l~~~~~ 100 (394)
+||.|++-- -|| ..++-.|+..|.+++.+ +++.+..... -+-.|++.. .+ .+-.|- +..+..
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~-v~Vyc~~~~~~~~~~~y~gv~l~~i~---~~~~g~---~~si~y 74 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGID-VTVYCRSDYYPYKEFEYNGVRLVYIP---APKNGS---AESIIY 74 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCce-EEEEEccCCCCCCCcccCCeEEEEeC---CCCCCc---hHHHHH
Confidence 467665432 356 55578899888876664 7776654211 122333321 11 112232 222333
Q ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCC--CchHHHHHHHHHhccccCCCCCeEEEeecCccccccCcchHHH-------
Q 016179 101 FRVRLKETIEAALLF--RPHAVVTVDSK--GFSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLK------- 169 (394)
Q Consensus 101 ~~~~~~~~~~~i~~~--~PD~Vi~~~~~--~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~~~g~~r~~------- 169 (394)
.+..+..+.+.++.. +.|+++..++. .|-+.+.+.+++. |.|+++.- .--.|.-..|...++
T Consensus 75 d~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~------g~~v~vN~-DGlEWkR~KW~~~~k~~lk~~E 147 (185)
T PF09314_consen 75 DFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKK------GGKVVVNM-DGLEWKRAKWGRPAKKYLKFSE 147 (185)
T ss_pred HHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhc------CCcEEECC-CcchhhhhhcCHHHHHHHHHHH
Confidence 344455555555543 67888877752 3455566555544 56865432 222243111101122
Q ss_pred HH-HHhhhheeecCcccHHHHH-hcC-CCeEEE
Q 016179 170 NL-AAFVDHILCILPNEEAICR-LNG-LAATFV 199 (394)
Q Consensus 170 ~l-~~~~d~v~~~~p~~~~~~~-~~g-~~~~~v 199 (394)
++ .+++|.+++-++.-+++++ +++ .+++++
T Consensus 148 ~~avk~ad~lIaDs~~I~~y~~~~y~~~~s~~I 180 (185)
T PF09314_consen 148 KLAVKYADRLIADSKGIQDYIKERYGRKKSTFI 180 (185)
T ss_pred HHHHHhCCEEEEcCHHHHHHHHHHcCCCCcEEe
Confidence 23 6889999999988888775 455 444443
No 151
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.44 E-value=0.91 Score=47.33 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhhhCCCeEEEEEeCCCc-ChHHHHHHHhhcC--C-----------------------------CCEEEe
Q 016179 258 LPIFAKTVELLKDSFPELITVIHVAPNR-HVENYITGLIQKW--P-----------------------------VPSILV 305 (394)
Q Consensus 258 l~~ll~a~~~l~~~~~~~~~vi~~g~~~-~~~~~l~~~~~~~--~-----------------------------~~v~~~ 305 (394)
+..+++++..+.+++|++++.+-+-++. +..+.+++.+.+. . ..+.+.
T Consensus 335 ~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~ 414 (519)
T TIGR03713 335 LQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFT 414 (519)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEE
Confidence 5567778888877889999886554432 2223333222211 0 134433
Q ss_pred cCCCcc--hHHHHHHHcccceehh---hHHHH-HHHHcCCCEE
Q 016179 306 PGGSSN--LKYDAFSASRVALCTS---GTVAV-ELQLARLPCV 342 (394)
Q Consensus 306 ~g~~~~--~~~~~~~~ADl~I~~S---Gt~tl-Ea~a~G~P~I 342 (394)
++ .+ ++.+.+..+.++|..| |-.|+ ||.+.|+|+|
T Consensus 415 -gy-~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI 455 (519)
T TIGR03713 415 -TL-TNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI 455 (519)
T ss_pred -ec-CCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee
Confidence 54 34 8999999999999999 44354 9999999998
No 152
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=91.03 E-value=1.6 Score=42.64 Aligned_cols=110 Identities=8% Similarity=0.016 Sum_probs=67.4
Q ss_pred CcEEEEECCCcHHHHHhhHHHHHHHHHHhhhh-CCCeEEEEEeCCC---cChHHHHHHHhhc-CCC-CEEEecCCC-cch
Q 016179 240 ATVISLLPGSRLQEVARMLPIFAKTVELLKDS-FPELITVIHVAPN---RHVENYITGLIQK-WPV-PSILVPGGS-SNL 312 (394)
Q Consensus 240 ~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~-~~~~~~vi~~g~~---~~~~~~l~~~~~~-~~~-~v~~~~g~~-~~~ 312 (394)
+.+|++ |..|..-|+++. +++.|++. ..+.+++++-+-. .++.+.+.+...+ .+. ++.++..+- .+|
T Consensus 185 ~ltILv--GNSgd~sNnHie----aL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~e 258 (360)
T PF07429_consen 185 KLTILV--GNSGDPSNNHIE----ALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDE 258 (360)
T ss_pred ceEEEE--cCCCCCCccHHH----HHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHH
Confidence 334444 777776777764 33444432 2469999998753 3344444443333 232 455543221 467
Q ss_pred HHHHHHHcccceehh----hHHHH-HHHHcCCCEEEEEcCChHHHHHHH
Q 016179 313 KYDAFSASRVALCTS----GTVAV-ELQLARLPCVVAYRAHFLTEWFIR 356 (394)
Q Consensus 313 ~~~~~~~ADl~I~~S----Gt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~ 356 (394)
--++++.||+++.-. |-.|+ =++.+|+|+++ .+-+++...+..
T Consensus 259 Yl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L-~~~np~~~~l~~ 306 (360)
T PF07429_consen 259 YLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFL-SRDNPFWQDLKE 306 (360)
T ss_pred HHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEE-ecCChHHHHHHh
Confidence 778999999999976 54554 68999999886 666666555543
No 153
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=90.70 E-value=4.1 Score=40.84 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=90.6
Q ss_pred hhhheeecCcccHHHHH-hcCCC---eEEEcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCcEEEEECCC
Q 016179 174 FVDHILCILPNEEAICR-LNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGS 249 (394)
Q Consensus 174 ~~d~v~~~~p~~~~~~~-~~g~~---~~~vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~~IlllgGS 249 (394)
.-|.+.+..|+....+. ..|+. +..+|.|--|.+..-.. ...........+.++.++++|+..|-=
T Consensus 148 ~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~----------~~~~~~~~~~~~~~~~~k~vIlyaPTf 217 (388)
T COG1887 148 HWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAG----------KTEDILLIQLALPLPQDKKVILYAPTF 217 (388)
T ss_pred eeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhcc----------chhhhHHHhhhcCCcccCceEEecCCc
Confidence 45666677777666543 33443 67899998886542100 011122234567788889999999877
Q ss_pred cHHH-----HHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccce
Q 016179 250 RLQE-----VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVAL 324 (394)
Q Consensus 250 rg~e-----i~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I 324 (394)
|+.+ ....++.-.+.+.+... ..+..+++--++-. .+...... .....+..+.. ..++.++|..+|++|
T Consensus 218 r~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ii~k~Hp~i--s~~~~~~~-~~~~~~~~vs~--~~di~dll~~sDiLI 291 (388)
T COG1887 218 RDNDVLIGTQFFNLDIDIEKLKEKLG-ENEYVIIVKPHPLI--SDKIDKRY-ALDDFVLDVSD--NADINDLLLVSDILI 291 (388)
T ss_pred cCCccccchhhhhhhhhHHHHHHhhc-cCCeEEEEecChhh--hhhhhhhh-hccceeEeccc--chhHHHHHhhhCEEE
Confidence 7754 11112222222222221 13566665555421 11111100 11111333333 358999999999999
Q ss_pred ehhhHHHHHHHHcCCCEEEEEcCChHH
Q 016179 325 CTSGTVAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 325 ~~SGt~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
|-=-++-.|.+.+.+|+++ |..+.-.
T Consensus 292 TDySSv~fdf~~l~KPiif-y~~D~~~ 317 (388)
T COG1887 292 TDYSSVIFDFMLLDKPIIF-YTYDLEQ 317 (388)
T ss_pred eechHHHHHHHHhcCcEEE-EecChHH
Confidence 9887777799999999886 5444333
No 154
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=90.45 E-value=2.8 Score=33.56 Aligned_cols=85 Identities=22% Similarity=0.278 Sum_probs=45.6
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCe-EE-EEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPV-SF-SGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETI 109 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~-~~-~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~ 109 (394)
||||++++|+-.|-.|-+| ++ .+. + ++ +..|+..+...+-. .+ +.. .-...+.
T Consensus 1 MkVLviGsGgREHAia~~l----~~-s~~-v~~v~~aPGN~G~~~~~~~--~~---~~~--------------~d~~~l~ 55 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKL----SQ-SPS-VEEVYVAPGNPGTAELGKN--VP---IDI--------------TDPEELA 55 (100)
T ss_dssp EEEEEEESSHHHHHHHHHH----TT-CTT-EEEEEEEE--TTGGGTSEE--E----S-T--------------T-HHHHH
T ss_pred CEEEEECCCHHHHHHHHHH----hc-CCC-CCEEEEeCCCHHHHhhcee--cC---CCC--------------CCHHHHH
Confidence 7999999997778665555 33 233 4 33 45554444332211 11 100 1123356
Q ss_pred HHHHhcCCCEEEEeCCCCch--HHHHHHHHHhccccCCCCCe
Q 016179 110 EAALLFRPHAVVTVDSKGFS--FRLLKQLRARYSHERLNGPA 149 (394)
Q Consensus 110 ~~i~~~~PD~Vi~~~~~~f~--~~la~~l~~~~~~~~~~ip~ 149 (394)
++.+++++|+||. | |.-| ..++-.+++. ++|+
T Consensus 56 ~~a~~~~idlvvv-G-PE~pL~~Gl~D~l~~~------gi~v 89 (100)
T PF02844_consen 56 DFAKENKIDLVVV-G-PEAPLVAGLADALRAA------GIPV 89 (100)
T ss_dssp HHHHHTTESEEEE-S-SHHHHHTTHHHHHHHT------T-CE
T ss_pred HHHHHcCCCEEEE-C-ChHHHHHHHHHHHHHC------CCcE
Confidence 7778899999885 4 3233 3456566654 7895
No 155
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=90.10 E-value=0.82 Score=46.88 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=36.8
Q ss_pred HHHHhhcCCC--C-EEEecCCCcchHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCCh
Q 016179 291 ITGLIQKWPV--P-SILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHF 349 (394)
Q Consensus 291 l~~~~~~~~~--~-v~~~~g~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~ 349 (394)
+.++.+++++ + +.++.-..+.+.+.+++.+..+...+ |-+++|||+||+|+|.+..+++
T Consensus 334 l~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP 400 (495)
T KOG0853|consen 334 LLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGP 400 (495)
T ss_pred HHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCc
Confidence 3344555543 2 33333221334566666666666655 7888999999999998776654
No 156
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=88.95 E-value=6.1 Score=40.67 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=58.6
Q ss_pred HHHhhcCCCCCCcEEEEECCCcHHHH-HhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecC
Q 016179 229 DFKNKYSVPSGATVISLLPGSRLQEV-ARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPG 307 (394)
Q Consensus 229 ~~r~~lgl~~~~~~IlllgGSrg~ei-~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g 307 (394)
+..+.+.-+.++.+|++-=||..... .+....+.++++ +.|. +|+|...+.. ...+ . .++.+..-
T Consensus 265 ~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~----~~~~-~~iW~~~~~~--~~~l----~---~n~~~~~W 330 (500)
T PF00201_consen 265 ELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFE----NLPQ-RFIWKYEGEP--PENL----P---KNVLIVKW 330 (500)
T ss_dssp HHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHH----CSTT-EEEEEETCSH--GCHH----H---TTEEEESS
T ss_pred ccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHh----hCCC-cccccccccc--cccc----c---ceEEEecc
Confidence 34444433236688999878865321 222233444433 3355 8999887521 1222 1 24555432
Q ss_pred CCcchHHHHHH--HcccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 308 GSSNLKYDAFS--ASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 308 ~~~~~~~~~~~--~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
.++ .++++ ..+++||=.|..++ |++.+|+|||.+ +.-.--..-+++++
T Consensus 331 --~PQ-~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~-P~~~DQ~~na~~~~ 381 (500)
T PF00201_consen 331 --LPQ-NDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGI-PLFGDQPRNAARVE 381 (500)
T ss_dssp ----H-HHHHTSTTEEEEEES--HHHHHHHHHCT--EEE--GCSTTHHHHHHHHH
T ss_pred --ccc-hhhhhcccceeeeeccccchhhhhhhccCCccCC-CCcccCCccceEEE
Confidence 122 46775 45789999998776 999999999974 44433333455554
No 157
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=88.55 E-value=3 Score=37.04 Aligned_cols=160 Identities=21% Similarity=0.241 Sum_probs=75.5
Q ss_pred ccCCCceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccc-cccCcce-----eccHHH----hh
Q 016179 27 IKDGELRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSL-FPMEDIA-----VMGIWE----LL 95 (394)
Q Consensus 27 ~~~~~~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~-~~~~~l~-----~~G~~~----~l 95 (394)
|++.+.++++..|++ ||.- -.++.+.|.++... -..+.-..+.|.++-+..+ .+..+.. +..-.| .+
T Consensus 34 Pk~~s~~~lVvlGSG-GHT~EMlrLl~~l~~~y~~-r~yI~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~l 111 (211)
T KOG3339|consen 34 PKDKSLSTLVVLGSG-GHTGEMLRLLEALQDLYSP-RSYIAADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWL 111 (211)
T ss_pred CcCCcceEEEEEcCC-CcHHHHHHHHHHHHhhcCc-eEEEEecCchhhHHHHHhhhccccccchhheecchhhhhhhhhh
Confidence 343445676666543 5655 56788888776542 3333222356644433221 0111111 111111 22
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCEEEEeCCCC--chHHHHHHHHHhccccCCCCCeEEEeecCccccc---cCcchHHHH
Q 016179 96 PHIYKFRVRLKETIEAALLFRPHAVVTVDSKG--FSFRLLKQLRARYSHERLNGPAHFHYVAPSFWAW---KGGEARLKN 170 (394)
Q Consensus 96 ~~~~~~~~~~~~~~~~i~~~~PD~Vi~~~~~~--f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~wa~---~~g~~r~~~ 170 (394)
...+..+..+.++.-++-+-+||++++-| |+ .+..+++.+-+.-. .....+.|+.---... -.| +-
T Consensus 112 tSv~Tti~all~s~~lv~RirPdlil~NG-PGTCv~i~~~a~l~~iL~----~~~~~IvyvES~cRV~tlSlsG----ki 182 (211)
T KOG3339|consen 112 TSVFTTIWALLQSFVLVWRIRPDLILCNG-PGTCVPICLSAYLMEILG----LKSSHIVYVESICRVKTLSLSG----KI 182 (211)
T ss_pred hhHHHHHHHHHHHheEEEecCCCEEEECC-CCcEeHHHHHHHHHHHhC----cCceEEEEEeeeeEeeccccCc----ee
Confidence 22333333444444555566899999876 44 35666665543211 1122334432110000 011 11
Q ss_pred HHHhhhheeecCcccHHHHHhcCCCeEEEcC
Q 016179 171 LAAFVDHILCILPNEEAICRLNGLAATFVGH 201 (394)
Q Consensus 171 l~~~~d~v~~~~p~~~~~~~~~g~~~~~vG~ 201 (394)
+...+|.+++-.|.-++.|. ++.+.|.
T Consensus 183 L~~~~d~Fivqw~~L~~ky~----~~~~~g~ 209 (211)
T KOG3339|consen 183 LYPVVDLFIVQWPALATKYL----RVKYFGI 209 (211)
T ss_pred ehhHHHHHHHhhHHHHHhcc----cceeeee
Confidence 46678888888887776554 3555553
No 158
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=87.88 E-value=2.3 Score=35.96 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=68.5
Q ss_pred EEEECCCcHHHHHhhHHH--HHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHc
Q 016179 243 ISLLPGSRLQEVARMLPI--FAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 320 (394)
Q Consensus 243 IlllgGSrg~ei~~~l~~--ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~A 320 (394)
|+++-||--...++++-. +.+..+.+ .-++++..|.. +... + .+ .+++.+-..+.+..+.+.|
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i-----~e~lIvQyGn~-d~kp-v------ag--l~v~~F~~~~kiQsli~da 66 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELI-----QEELIVQYGNG-DIKP-V------AG--LRVYGFDKEEKIQSLIHDA 66 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHh-----hhheeeeecCC-Cccc-c------cc--cEEEeechHHHHHHHhhcc
Confidence 566677774445554222 22222222 34677777753 2221 1 12 2333111146799999999
Q ss_pred ccceehhhHHHH-HHHHcCCCEEEEEcCChHHH-------HHHHhhccCCccchhh
Q 016179 321 RVALCTSGTVAV-ELQLARLPCVVAYRAHFLTE-------WFIRYKAKIPYISLPN 368 (394)
Q Consensus 321 Dl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~-------~~a~~~vk~~~~~l~N 368 (394)
.++|+-+|+.++ -+.-.++|.|++.+.+.... .+|+.++..+|+...|
T Consensus 67 rIVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~s 122 (161)
T COG5017 67 RIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACS 122 (161)
T ss_pred eEEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEc
Confidence 999999999886 99999999999877664322 3477777777765544
No 159
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=87.34 E-value=2.4 Score=43.76 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=62.7
Q ss_pred HHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcC----hHH---HHHHHhhcCCCCE
Q 016179 230 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH----VEN---YITGLIQKWPVPS 302 (394)
Q Consensus 230 ~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~----~~~---~l~~~~~~~~~~v 302 (394)
..+-+.-.+++++|.+.-||....-.+.+..+ +..|.. .+..|+++..+... ... -+++... +..+
T Consensus 273 ~~~WLd~~~~~svVyvsfGS~~~~~~~~~~el---a~gL~~--~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~--~~g~ 345 (477)
T PLN02863 273 VMTWLDTCEDHKVVYVCFGSQVVLTKEQMEAL---ASGLEK--SGVHFIWCVKEPVNEESDYSNIPSGFEDRVA--GRGL 345 (477)
T ss_pred HHHHHhcCCCCceEEEEeeceecCCHHHHHHH---HHHHHh--CCCcEEEEECCCcccccchhhCCHHHHHHhc--cCCE
Confidence 33334444556889998888753111222333 333433 25678888863211 000 0111111 1123
Q ss_pred EEecCCCcchHHHHHHH--cccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 303 ILVPGGSSNLKYDAFSA--SRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 303 ~~~~g~~~~~~~~~~~~--ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
.+. +. .+ -.++++. .+++|+=.|-.+. |++++|+|+|+ .+.-.--+..+++++
T Consensus 346 ~v~-~w-~P-Q~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~-~P~~~DQ~~na~~v~ 401 (477)
T PLN02863 346 VIR-GW-AP-QVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLA-WPMAADQFVNASLLV 401 (477)
T ss_pred Eec-CC-CC-HHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEe-CCccccchhhHHHHH
Confidence 332 22 12 3467775 6799999997665 99999999986 454433333355443
No 160
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=87.30 E-value=7.1 Score=34.69 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=23.6
Q ss_pred hHHHHHHHcccceehhhH-HHH-HH---HH------cCCCEEEEE
Q 016179 312 LKYDAFSASRVALCTSGT-VAV-EL---QL------ARLPCVVAY 345 (394)
Q Consensus 312 ~~~~~~~~ADl~I~~SGt-~tl-Ea---~a------~G~P~Iv~y 345 (394)
....++..||.+|+-+|+ .|+ |+ .. ..+|++++.
T Consensus 89 Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 89 RKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 344577889999999964 555 54 32 399988743
No 161
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=86.49 E-value=4.9 Score=43.90 Aligned_cols=109 Identities=15% Similarity=0.100 Sum_probs=69.7
Q ss_pred CCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhh--C--CCeEEEEEeCCCcChH------HHHHHHhh--cCCCCEE
Q 016179 236 VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS--F--PELITVIHVAPNRHVE------NYITGLIQ--KWPVPSI 303 (394)
Q Consensus 236 l~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~--~--~~~~~vi~~g~~~~~~------~~l~~~~~--~~~~~v~ 303 (394)
++++.++|.+. +|-++.|+. .++++.++++.+. . .++|||+.+-..+..+ +.+.+..+ ....++.
T Consensus 474 ldpd~ltigfa--rRfa~YKR~-~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVv 550 (778)
T cd04299 474 LDPNVLTIGFA--RRFATYKRA-TLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIV 550 (778)
T ss_pred cCCCccEEeee--ecchhhhhH-HHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEE
Confidence 45566666664 677888873 4567776666431 1 3589888875443221 12333333 2333677
Q ss_pred EecCCCcchHHHHHHHcccceeh-------hhHHHHHHHHcCCCEEEEEcC
Q 016179 304 LVPGGSSNLKYDAFSASRVALCT-------SGTVAVELQLARLPCVVAYRA 347 (394)
Q Consensus 304 ~~~g~~~~~~~~~~~~ADl~I~~-------SGt~tlEa~a~G~P~Iv~y~~ 347 (394)
++.+|...-...+++.||+.+.. |||+-+=++.-|.+.+-+..+
T Consensus 551 fle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDG 601 (778)
T cd04299 551 FLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDG 601 (778)
T ss_pred EEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccC
Confidence 88887323345679999988874 599999999999998877654
No 162
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=86.05 E-value=7.4 Score=36.88 Aligned_cols=113 Identities=6% Similarity=-0.087 Sum_probs=63.1
Q ss_pred EEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEec--ChhhHhccCccccccCcceeccHHHhhhhHHHHHH---------
Q 016179 35 FIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVG--GSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRV--------- 103 (394)
Q Consensus 35 lI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~g--g~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~--------- 103 (394)
..+-|-..|---+..|++++++++ +-++-.| +..+.++|+...+++.-+++..............|
T Consensus 131 a~ivG~a~~~e~~~~I~~e~q~r~---~lv~l~G~i~~q~~E~G~~lg~~~~lvp~G~~ts~~H~~g~AiRaAliFggv~ 207 (287)
T cd01917 131 AVILGRAKDSKALKKIVDDLMGRG---FMLFLCDEIVEQLLEENVKLGLDYIAYPLGNFTQAIHAANYALRAGLMFGGIE 207 (287)
T ss_pred EEEEecCCChHHHHHHHHHHHHCC---cEEEEecHHHHHHHHcCCeeccceeEeecCchhhHHHHHHHHHHHHHHhCCCC
Confidence 333343334445889999999874 3333333 24567888887666555555544332222221122
Q ss_pred --HHHHHHHHHHhcCCCEEEEeCC-CCchHHHHHHHHHhccccCCCCCeEEEeecC
Q 016179 104 --RLKETIEAALLFRPHAVVTVDS-KGFSFRLLKQLRARYSHERLNGPAHFHYVAP 156 (394)
Q Consensus 104 --~~~~~~~~i~~~~PD~Vi~~~~-~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~ 156 (394)
-+.++.++.++.=|-+|+.+|- ..-....+.-+-+ .|+|++++...|
T Consensus 208 pGn~~ei~dY~~nRV~Afv~A~G~~s~~~~A~aaGai~------~GfPVI~d~~~p 257 (287)
T cd01917 208 PGKREEIRDYQRRRVRAFVLYLGELDMVKTAAAAGAIF------TGFPVITDQELP 257 (287)
T ss_pred CcCHHHHHHHHHhhcCEEEEeccccCHHHHHHHhhHHH------cCCCEEeCCCCc
Confidence 2677888888888888888862 1112222222222 289987774334
No 163
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=86.02 E-value=18 Score=31.36 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=43.8
Q ss_pred HHHHHHHcccceehhh---HHH-H-HHHHcCCCEEEEEcCChHHHHHHHhhccCCccchhhhhcCCCCcccccCCCCCHH
Q 016179 313 KYDAFSASRVALCTSG---TVA-V-ELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPD 387 (394)
Q Consensus 313 ~~~~~~~ADl~I~~SG---t~t-l-Ea~a~G~P~Iv~y~~~~~~~~~a~~~vk~~~~~l~Nil~~~~i~pEliq~~~~~~ 387 (394)
..-....||.+|+.+| |.. + |+...++|+++++-.+..+.++... +.+....++++.-.-+++
T Consensus 85 k~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g~~~~~l~~~------------~~~~~~~~~~~~~~~~~~ 152 (159)
T TIGR00725 85 NFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTGGWTDRLSQV------------LIEGVYLDERVIVEITPA 152 (159)
T ss_pred HHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCCcchHHHHHH------------HhccccccceeEecCCHH
Confidence 3446678999999774 433 3 8889999988766555555544431 222333444566667788
Q ss_pred HHHHHh
Q 016179 388 TLTHLL 393 (394)
Q Consensus 388 ~i~~~~ 393 (394)
.+.+.+
T Consensus 153 e~~~~~ 158 (159)
T TIGR00725 153 EAVKLA 158 (159)
T ss_pred HHHHhh
Confidence 777654
No 164
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.99 E-value=3 Score=43.76 Aligned_cols=134 Identities=14% Similarity=0.186 Sum_probs=79.4
Q ss_pred HHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC---CEEEec
Q 016179 230 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV---PSILVP 306 (394)
Q Consensus 230 ~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~---~v~~~~ 306 (394)
.|..++|++|..+..-+ .+ .-++-|..++....+.+..|+-.+++.+-+... ++.++....+.|+ ++.+.+
T Consensus 749 ~r~~y~Lp~d~vvf~~F--Nq---LyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g-e~rf~ty~~~~Gl~p~riifs~ 822 (966)
T KOG4626|consen 749 TRSQYGLPEDAVVFCNF--NQ---LYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG-EQRFRTYAEQLGLEPDRIIFSP 822 (966)
T ss_pred CCCCCCCCCCeEEEeec--hh---hhcCCHHHHHHHHHHHHhCCcceeEEEeccccc-hHHHHHHHHHhCCCccceeecc
Confidence 46678999887444433 22 334567888888888888888666655433211 2334444444444 233222
Q ss_pred CCCcchHHHHHHHcccceehh---hHHHH-HHHHcCCCEEEEEcCChHHHHHH-HhhccCCccchhhhhcCC
Q 016179 307 GGSSNLKYDAFSASRVALCTS---GTVAV-ELQLARLPCVVAYRAHFLTEWFI-RYKAKIPYISLPNILLDS 373 (394)
Q Consensus 307 g~~~~~~~~~~~~ADl~I~~S---Gt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a-~~~vk~~~~~l~Nil~~~ 373 (394)
--..+|--...+-||+.+-.+ |++|- |.+-.|+|||. -++..+...+| ..+. ..|++.++++.
T Consensus 823 va~k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVT-mpge~lAsrVa~Sll~---~~Gl~hliak~ 890 (966)
T KOG4626|consen 823 VAAKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVT-MPGETLASRVAASLLT---ALGLGHLIAKN 890 (966)
T ss_pred ccchHHHHHhhhhhhhcccCcCcCCcccchhhhccCCceee-cccHHHHHHHHHHHHH---HcccHHHHhhh
Confidence 100123334456678877655 87775 99999999985 67666665554 3344 45667766653
No 165
>PLN02210 UDP-glucosyl transferase
Probab=85.90 E-value=2 Score=44.06 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=62.5
Q ss_pred CCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcC--hHHHHHHHhhcCCCCEEEecCCCcchHH
Q 016179 237 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--VENYITGLIQKWPVPSILVPGGSSNLKY 314 (394)
Q Consensus 237 ~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~--~~~~l~~~~~~~~~~v~~~~g~~~~~~~ 314 (394)
.+++++|.+.-||....-.+ .+.+.+..|.. .+.+|+++..+... ..+.+++.... .+..+. +. . .-.
T Consensus 266 ~~~~svvyvsfGS~~~~~~~---~~~e~a~~l~~--~~~~flw~~~~~~~~~~~~~~~~~~~~--~~g~v~-~w-~-PQ~ 335 (456)
T PLN02210 266 QARSSVVYISFGSMLESLEN---QVETIAKALKN--RGVPFLWVIRPKEKAQNVQVLQEMVKE--GQGVVL-EW-S-PQE 335 (456)
T ss_pred CCCCceEEEEecccccCCHH---HHHHHHHHHHh--CCCCEEEEEeCCccccchhhHHhhccC--CCeEEE-ec-C-CHH
Confidence 34567899988887531111 22233333432 24678887754211 11112222211 123233 22 1 234
Q ss_pred HHHHHcc--cceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhcc
Q 016179 315 DAFSASR--VALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAK 360 (394)
Q Consensus 315 ~~~~~AD--l~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~vk 360 (394)
++++.++ ++||=.|-.+. |++..|+|+|. .+...--+..++++++
T Consensus 336 ~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~-~P~~~DQ~~na~~~~~ 383 (456)
T PLN02210 336 KILSHMAISCFVTHCGWNSTIETVVAGVPVVA-YPSWTDQPIDARLLVD 383 (456)
T ss_pred HHhcCcCcCeEEeeCCcccHHHHHHcCCCEEe-cccccccHHHHHHHHH
Confidence 6888887 99999997665 99999999986 5654444444666653
No 166
>PLN02167 UDP-glycosyltransferase family protein
Probab=84.47 E-value=2.4 Score=43.73 Aligned_cols=108 Identities=11% Similarity=0.029 Sum_probs=56.1
Q ss_pred HHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcC--------hHHHHHHHhhcCCCC
Q 016179 230 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--------VENYITGLIQKWPVP 301 (394)
Q Consensus 230 ~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~--------~~~~l~~~~~~~~~~ 301 (394)
..+-+.-.+.+.+|.+.-||...--. +.+.+.+..|.. .+..|+|+...... +-+-+.+...+ +
T Consensus 270 ~~~wld~~~~~svvyvsfGS~~~~~~---~~~~ela~~l~~--~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~---r 341 (475)
T PLN02167 270 IMRWLDDQPESSVVFLCFGSLGSLPA---PQIKEIAQALEL--VGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMG---R 341 (475)
T ss_pred HHHHHhcCCCCceEEEeecccccCCH---HHHHHHHHHHHh--CCCcEEEEEecCcccccchhhhCChHHHHHhcc---C
Confidence 43333334456689888888753111 122233333332 24578887653211 00001111111 2
Q ss_pred EEEecCCCcchHHHHHHH--cccceehhhHHH-HHHHHcCCCEEEEEcCCh
Q 016179 302 SILVPGGSSNLKYDAFSA--SRVALCTSGTVA-VELQLARLPCVVAYRAHF 349 (394)
Q Consensus 302 v~~~~g~~~~~~~~~~~~--ADl~I~~SGt~t-lEa~a~G~P~Iv~y~~~~ 349 (394)
..+. +. -.-.++++. .+.+|+=.|-.| +|++.+|+|+|+ .+...
T Consensus 342 g~v~-~w--~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~-~P~~~ 388 (475)
T PLN02167 342 GLVC-GW--APQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIAT-WPMYA 388 (475)
T ss_pred eeee-cc--CCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEe-ccccc
Confidence 3333 22 123467765 567999999755 599999999986 45443
No 167
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=84.31 E-value=5 Score=44.69 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=59.1
Q ss_pred HHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeE----EEEEeCCC----cChHH---HHHHHhh-
Q 016179 229 DFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELI----TVIHVAPN----RHVEN---YITGLIQ- 296 (394)
Q Consensus 229 ~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~----~vi~~g~~----~~~~~---~l~~~~~- 296 (394)
+++++++ ++++|+ +=.|....|. ++.-++|++.+.+++|+.+ ++.++.+. +++.+ .+.+.+.
T Consensus 355 ~lr~~~~---g~kiIl--gVDRLD~~KG-I~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~r 428 (934)
T PLN03064 355 ELKERFA---GRKVML--GVDRLDMIKG-IPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGR 428 (934)
T ss_pred HHHHHhC---CceEEE--EeeccccccC-HHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4555654 344343 3355554444 6777889999887778743 33233222 12222 1222111
Q ss_pred ---cCC----CCEEEecC-CCcchHHHHHHHcccceehh-----hHHHHHHHHcCC
Q 016179 297 ---KWP----VPSILVPG-GSSNLKYDAFSASRVALCTS-----GTVAVELQLARL 339 (394)
Q Consensus 297 ---~~~----~~v~~~~g-~~~~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~ 339 (394)
.++ .+++++.- ...++..++|+.||+++..| +.+..|+++|+.
T Consensus 429 IN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~ 484 (934)
T PLN03064 429 INGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQD 484 (934)
T ss_pred HhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhc
Confidence 111 12444321 11467889999999999999 456679999954
No 168
>PLN02554 UDP-glycosyltransferase family protein
Probab=81.41 E-value=6 Score=40.90 Aligned_cols=36 Identities=11% Similarity=0.048 Sum_probs=28.0
Q ss_pred HHHHH--HHcccceehhhHHHH-HHHHcCCCEEEEEcCCh
Q 016179 313 KYDAF--SASRVALCTSGTVAV-ELQLARLPCVVAYRAHF 349 (394)
Q Consensus 313 ~~~~~--~~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~ 349 (394)
-.+++ .+.+++|+=.|-.+. |++.+|+|||+ .+...
T Consensus 352 Q~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~-~P~~~ 390 (481)
T PLN02554 352 QVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAA-WPLYA 390 (481)
T ss_pred HHHHhCCcccCcccccCccchHHHHHHcCCCEEe-cCccc
Confidence 35678 677789999997665 99999999996 55543
No 169
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=80.47 E-value=28 Score=33.59 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=54.5
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChH-HHHHHHhhcCCCCEEEecCCCcchHHHHHHH
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE-NYITGLIQKWPVPSILVPGGSSNLKYDAFSA 319 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~-~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 319 (394)
-+||..+-|+- +.+ .+.++. ++..++++++.-+. +..+ ..+...+.+.+.++.++.. ..+..+|..
T Consensus 117 ~~ILT~~~S~t--v~~---~l~~a~----~~~~~f~V~v~Esr-P~~~G~~~a~~L~~~gI~vtlI~D---sa~~~~m~~ 183 (301)
T TIGR00511 117 DVVMTHCNSEA--ALS---VIKTAF----EQGKDIEVIATETR-PRKQGHITAKELRDYGIPVTLIVD---SAVRYFMKE 183 (301)
T ss_pred CEEEEECCcHH--HHH---HHHHHH----HcCCcEEEEEecCC-CcchHHHHHHHHHHCCCCEEEEeh---hHHHHHHHh
Confidence 47888876643 222 233332 22345776654443 3222 1122334556778887763 467788999
Q ss_pred ccccee-------------hhhHHHH--HHHHcCCCEEEEEc
Q 016179 320 SRVALC-------------TSGTVAV--ELQLARLPCVVAYR 346 (394)
Q Consensus 320 ADl~I~-------------~SGt~tl--Ea~a~G~P~Iv~y~ 346 (394)
.|.++. +.||..+ =|-..++|++++-+
T Consensus 184 vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~ 225 (301)
T TIGR00511 184 VDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAE 225 (301)
T ss_pred CCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcc
Confidence 998876 4477665 45667999998633
No 170
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=79.63 E-value=33 Score=33.09 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=38.0
Q ss_pred HHhhcCCCCEEEecCCCcchHHHHHHHccccee-------------hhhHHHH--HHHHcCCCEEEE---EcCCh
Q 016179 293 GLIQKWPVPSILVPGGSSNLKYDAFSASRVALC-------------TSGTVAV--ELQLARLPCVVA---YRAHF 349 (394)
Q Consensus 293 ~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~-------------~SGt~tl--Ea~a~G~P~Iv~---y~~~~ 349 (394)
+.+++++.++.++.. ..+..+|..+|.++. +.||..+ =|--+|+|++++ ||..+
T Consensus 164 k~L~~~gI~~~~I~D---sa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf~p 235 (301)
T COG1184 164 KELRQSGIPVTVIVD---SAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYKFVP 235 (301)
T ss_pred HHHHHcCCceEEEec---hHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeecccc
Confidence 345677877777753 468888988887665 6688877 344579999877 56554
No 171
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=78.95 E-value=22 Score=37.82 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=61.6
Q ss_pred EEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecC--hhhHhccCccccccCcceec-cHHHhhhhHHHHHH--------
Q 016179 35 FIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGG--SMMSEQGMKSLFPMEDIAVM-GIWELLPHIYKFRV-------- 103 (394)
Q Consensus 35 lI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg--~~m~~~g~~~~~~~~~l~~~-G~~~~l~~~~~~~~-------- 103 (394)
.|++....+ -.++.|++++++++ +-++-.|. +++.++++...++..-+++. .............|
T Consensus 140 aIvG~apd~-e~a~~Ia~Elq~r~---~lvfl~G~l~EQl~e~gvk~G~~~~lvp~G~~~ts~vHa~g~AiRaAliFGgv 215 (711)
T PRK09529 140 VIVGAAPDS-EKAKKIIKELQKKN---LLTFLCGEVIEQLIEAGVKLGLDYRLVPLGDDITSAIHAANFAIRAALIFGGV 215 (711)
T ss_pred EEEecCCCh-HHHHHHHHHHHHCC---cEEEEcCcHHHHhhhcccccccceeEEecCCchhhHHHHHHHHHHHHHHhcCC
Confidence 344444444 44889999999874 33444443 45667777665554444444 33222211111111
Q ss_pred ---HHHHHHHHHHhcCCCEEEEeCCCC-chHHHHHHHHHhccccCCCCCeEEEeecCc
Q 016179 104 ---RLKETIEAALLFRPHAVVTVDSKG-FSFRLLKQLRARYSHERLNGPAHFHYVAPS 157 (394)
Q Consensus 104 ---~~~~~~~~i~~~~PD~Vi~~~~~~-f~~~la~~l~~~~~~~~~~ip~~~~yv~~~ 157 (394)
-+.++..+.++.=|-+|+.+|-.+ -....++-+-+ .|+|++++...|.
T Consensus 216 ~pGd~~ei~dY~~nRV~AfViA~G~~s~~~~A~aaGai~------~GfPVItd~~~pe 267 (711)
T PRK09529 216 EPGDYEELLDYTKERVPAFVNALGELDDEWVAAAAGAIN------LGFPVITDQDVPE 267 (711)
T ss_pred CCcCHHHHHHHHHhhccEEEEeecccCHHHHHHHhhHHh------cCCcEeeCCCCcc
Confidence 267788888888888899887211 12222222222 2899887754443
No 172
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=78.31 E-value=32 Score=33.40 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=53.3
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHH-HHHHHhhcCCCCEEEecCCCcchHHHHHHH
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVEN-YITGLIQKWPVPSILVPGGSSNLKYDAFSA 319 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~-~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 319 (394)
-+||..+-|+- +.. .+.++. ++..++++++.=+. +..+- .+...+.+.+.++.++.. ..+..+|..
T Consensus 122 ~~ILT~~~S~t--v~~---~l~~A~----~~~k~~~V~v~Esr-P~~~G~~~a~~L~~~GI~vtlI~D---sav~~~m~~ 188 (310)
T PRK08535 122 DVIMTHCNSSA--ALS---VIKTAH----EQGKDIEVIATETR-PRNQGHITAKELAEYGIPVTLIVD---SAVRYFMKD 188 (310)
T ss_pred CEEEEeCCcHH--HHH---HHHHHH----HCCCeEEEEEecCC-chhhHHHHHHHHHHCCCCEEEEeh---hHHHHHHHh
Confidence 37888876643 221 222222 22345665544332 32211 122234456778887763 468888999
Q ss_pred ccccee-------------hhhHHHH--HHHHcCCCEEEEEc
Q 016179 320 SRVALC-------------TSGTVAV--ELQLARLPCVVAYR 346 (394)
Q Consensus 320 ADl~I~-------------~SGt~tl--Ea~a~G~P~Iv~y~ 346 (394)
.|.++. ++||..+ =|-..++|++++.+
T Consensus 189 vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~ 230 (310)
T PRK08535 189 VDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAE 230 (310)
T ss_pred CCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecc
Confidence 998876 4477665 45567999998643
No 173
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=76.64 E-value=18 Score=34.29 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=51.3
Q ss_pred CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHH-HHHHHhhcCCCCEEEecCCCcchHHHHH
Q 016179 239 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVEN-YITGLIQKWPVPSILVPGGSSNLKYDAF 317 (394)
Q Consensus 239 ~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~-~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 317 (394)
+.-+|+..+-|+- +.+ .+.. ..+...++++++.-+. +..+- .+.+.+.+.+.++.+++. ..+..+|
T Consensus 107 ~~~~ILT~~~S~~--v~~---~l~~----a~~~~~~~~V~v~es~-P~~eG~~~a~~L~~~gi~v~~i~d---~~~~~~m 173 (282)
T PF01008_consen 107 DGDTILTHGYSST--VER---FLLS----AKKKGKKFRVIVLESR-PYNEGRLMAKELAEAGIPVTLIPD---SAVGYVM 173 (282)
T ss_dssp TTEEEEEES--SH--HHH---HHHH----HHHTTEEEEEEEE--T-TTTHHHTHHHHHHHTT-EEEEE-G---GGHHHHH
T ss_pred CCeEEEEeCCchH--HHH---HHHH----HHHcCCeEEEEEccCC-cchhhhhHHHHhhhcceeEEEEec---hHHHHHH
Confidence 4558999887765 322 2222 2232345777666543 22221 122223445777887763 5688999
Q ss_pred HH-ccccee-------------hhhHHHH--HHHHcCCCEEEEE
Q 016179 318 SA-SRVALC-------------TSGTVAV--ELQLARLPCVVAY 345 (394)
Q Consensus 318 ~~-ADl~I~-------------~SGt~tl--Ea~a~G~P~Iv~y 345 (394)
.. +|.++. ++||..+ =|-.+++|++++.
T Consensus 174 ~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~ 217 (282)
T PF01008_consen 174 PRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLA 217 (282)
T ss_dssp HCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE-
T ss_pred HHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEc
Confidence 99 888776 4477665 5556799999873
No 174
>PLN00164 glucosyltransferase; Provisional
Probab=76.62 E-value=9.1 Score=39.55 Aligned_cols=46 Identities=9% Similarity=-0.057 Sum_probs=31.8
Q ss_pred HHHHHHHcc--cceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 313 KYDAFSASR--VALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 313 ~~~~~~~AD--l~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
-.++++..+ ++|+=.|-.|. |++.+|+|+|. .+.-.--+.-+++++
T Consensus 349 Q~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~-~P~~~DQ~~Na~~~~ 397 (480)
T PLN00164 349 QKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAP-WPLYAEQHLNAFELV 397 (480)
T ss_pred HHHHhcCcccCeEEeecccchHHHHHHcCCCEEe-CCccccchhHHHHHH
Confidence 356788777 68888887654 99999999986 555443333355443
No 175
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=76.01 E-value=31 Score=34.77 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=50.9
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeE--EEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVS--FSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETI 109 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~--~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~ 109 (394)
||||++++|+-.|-.|-+|++ .+. +. +++.|++.+... . ....++. + .-..++.
T Consensus 1 mkVLviGsGgREHAiA~~la~-----s~~-v~~~~~apgN~G~a~~---~--~~~~~~~----~---------~~~~~lv 56 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQ-----SPL-VLYVYVAPGNPGTALE---A--YLVNIEI----D---------TDHEALV 56 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhc-----CCc-eeEEEEeCCCCccchh---h--hhccCcc----c---------cCHHHHH
Confidence 799999998888987777765 343 33 566666655420 0 0000100 0 1123456
Q ss_pred HHHHhcCCCEEEEeCCCCch--HHHHHHHHHhccccCCCCCe
Q 016179 110 EAALLFRPHAVVTVDSKGFS--FRLLKQLRARYSHERLNGPA 149 (394)
Q Consensus 110 ~~i~~~~PD~Vi~~~~~~f~--~~la~~l~~~~~~~~~~ip~ 149 (394)
++.++.++|++|. | |.-| ..++-.+++. |+|+
T Consensus 57 ~fA~~~~idl~vV-G-PE~pL~~GvvD~l~~~------Gi~v 90 (428)
T COG0151 57 AFAKEKNVDLVVV-G-PEAPLVAGVVDALRAA------GIPV 90 (428)
T ss_pred HHHHHcCCCEEEE-C-CcHHHhhhhHHHHHHC------CCce
Confidence 7778899998885 4 3333 4566667665 7895
No 176
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=75.22 E-value=60 Score=30.96 Aligned_cols=96 Identities=14% Similarity=0.033 Sum_probs=54.7
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChH-HHHHHHhhcCCCCEEEecCCCcchHHHHHHH
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE-NYITGLIQKWPVPSILVPGGSSNLKYDAFSA 319 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~-~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 319 (394)
-+||-.+-|.- + +..+....++..++++++.-.. +..+ ..+...+.+.+.++.++.. ..+..+|..
T Consensus 111 ~~ILTh~~S~t--v-------~~~l~~A~~~gk~~~V~v~Esr-P~~qG~~la~eL~~~GI~vtlI~D---sa~~~~m~~ 177 (275)
T PRK08335 111 DVIITHSFSSA--V-------LEILKTAKRKGKRFKVILTESA-PDYEGLALANELEFLGIEFEVITD---AQLGLFAKE 177 (275)
T ss_pred CEEEEECCcHH--H-------HHHHHHHHHcCCceEEEEecCC-CchhHHHHHHHHHHCCCCEEEEec---cHHHHHHHh
Confidence 37887766632 1 1222222333345665543332 2222 1233334556778887763 457778999
Q ss_pred ccccee-------------hhhHHHH--HHHHcCCCEEEEEcCCh
Q 016179 320 SRVALC-------------TSGTVAV--ELQLARLPCVVAYRAHF 349 (394)
Q Consensus 320 ADl~I~-------------~SGt~tl--Ea~a~G~P~Iv~y~~~~ 349 (394)
.|.+|. +.||..+ =|-..|+|++++-+...
T Consensus 178 vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k 222 (275)
T PRK08335 178 ATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETFK 222 (275)
T ss_pred CCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECccce
Confidence 998876 4477665 55677999998744433
No 177
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=74.75 E-value=7.4 Score=31.34 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=48.9
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhc-cCccccccCcceeccHHHhhhhHHHHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQ-GMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIE 110 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~-g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~ 110 (394)
+||.|++.|..|..+..++ .+..++ .+++++-.+.-+.. .+...+. ++ .+ ....+
T Consensus 1 i~v~iiG~G~~g~~~~~~~----~~~~~~-~~v~~v~d~~~~~~~~~~~~~~---~~--~~--------------~~~~~ 56 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRAL----LRSSPD-FEVVAVCDPDPERAEAFAEKYG---IP--VY--------------TDLEE 56 (120)
T ss_dssp EEEEEESTSHHHHHHHHHH----HHTTTT-EEEEEEECSSHHHHHHHHHHTT---SE--EE--------------SSHHH
T ss_pred CEEEEECCcHHHHHHHHHH----HhcCCC-cEEEEEEeCCHHHHHHHHHHhc---cc--ch--------------hHHHH
Confidence 5788999887776664443 444454 78887765422111 0000001 11 01 01345
Q ss_pred HHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCe
Q 016179 111 AALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPA 149 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~ 149 (394)
++.+.++|+|+....+.....++..+.+. |+++
T Consensus 57 ll~~~~~D~V~I~tp~~~h~~~~~~~l~~------g~~v 89 (120)
T PF01408_consen 57 LLADEDVDAVIIATPPSSHAEIAKKALEA------GKHV 89 (120)
T ss_dssp HHHHTTESEEEEESSGGGHHHHHHHHHHT------TSEE
T ss_pred HHHhhcCCEEEEecCCcchHHHHHHHHHc------CCEE
Confidence 56667999998876545666666666555 6775
No 178
>PLN02207 UDP-glycosyltransferase
Probab=74.56 E-value=12 Score=38.51 Aligned_cols=121 Identities=14% Similarity=0.112 Sum_probs=60.9
Q ss_pred HHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcC-hHHHH-HHHhhcCCCCEEEecC
Q 016179 230 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH-VENYI-TGLIQKWPVPSILVPG 307 (394)
Q Consensus 230 ~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~-~~~~l-~~~~~~~~~~v~~~~g 307 (394)
..+-|+-.++..+|.+.-||...--.+.+..+..+++.. +.+|+|+..+... ..+.+ +...+....+..+. +
T Consensus 265 ~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~-----~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~-~ 338 (468)
T PLN02207 265 LMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELC-----QYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMIC-G 338 (468)
T ss_pred HHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHC-----CCcEEEEEeCCCccccccCCHHHHhhcCCCeEEE-E
Confidence 333343344557899988887631111223333333322 3478887753110 00000 11111111233333 2
Q ss_pred CCcchHHHHHHHccc--ceehhhHHH-HHHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 308 GSSNLKYDAFSASRV--ALCTSGTVA-VELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 308 ~~~~~~~~~~~~ADl--~I~~SGt~t-lEa~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
. . .-.++++...+ +||=.|-.+ +|++.+|+|||. .+.-.--+.-+++++
T Consensus 339 W-~-PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~-~P~~~DQ~~Na~~~~ 390 (468)
T PLN02207 339 W-S-PQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVT-WPMYAEQQLNAFLMV 390 (468)
T ss_pred e-C-CHHHHhcccccceeeecCccccHHHHHHcCCCEEe-cCccccchhhHHHHH
Confidence 1 1 22456776555 999999755 599999999886 555443334455544
No 179
>PLN02562 UDP-glycosyltransferase
Probab=74.08 E-value=17 Score=37.16 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=58.2
Q ss_pred CCCcEEEEECCCcHHHH-HhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc--ChHHHHHHHhhcCCCCEEEecCCCcchHH
Q 016179 238 SGATVISLLPGSRLQEV-ARMLPIFAKTVELLKDSFPELITVIHVAPNR--HVENYITGLIQKWPVPSILVPGGSSNLKY 314 (394)
Q Consensus 238 ~~~~~IlllgGSrg~ei-~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~--~~~~~l~~~~~~~~~~v~~~~g~~~~~~~ 314 (394)
+...+|.+.-||..... .+.+..+..+++.. +..|+|+..... .+-+-.++... .++.+.. . -.-.
T Consensus 271 ~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~-----g~~fiW~~~~~~~~~l~~~~~~~~~---~~~~v~~-w--~PQ~ 339 (448)
T PLN02562 271 KPNSVIYISFGSWVSPIGESNVRTLALALEAS-----GRPFIWVLNPVWREGLPPGYVERVS---KQGKVVS-W--APQL 339 (448)
T ss_pred CCCceEEEEecccccCCCHHHHHHHHHHHHHC-----CCCEEEEEcCCchhhCCHHHHHHhc---cCEEEEe-c--CCHH
Confidence 33458888878864211 11233344444332 346787663211 11111112121 2444442 2 1345
Q ss_pred HHHHHcc--cceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 315 DAFSASR--VALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 315 ~~~~~AD--l~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
++++..+ ++|+=.|-.|. |++.+|+|+|+ .+.-.--+.-+++++
T Consensus 340 ~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~-~P~~~DQ~~na~~~~ 386 (448)
T PLN02562 340 EVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLC-YPVAGDQFVNCAYIV 386 (448)
T ss_pred HHhCCCccceEEecCcchhHHHHHHcCCCEEe-CCcccchHHHHHHHH
Confidence 6887755 68999997665 99999999886 455443334455543
No 180
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=72.72 E-value=15 Score=37.68 Aligned_cols=114 Identities=14% Similarity=0.002 Sum_probs=60.0
Q ss_pred CCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc----ChHH-HHHHHhhcCCCCEEEecCCCcc
Q 016179 237 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR----HVEN-YITGLIQKWPVPSILVPGGSSN 311 (394)
Q Consensus 237 ~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~----~~~~-~l~~~~~~~~~~v~~~~g~~~~ 311 (394)
.+.+.+|.+.=||...--. ..+.+.+.-|... +..|+|+..+.. +..+ .-....+....+..+. +..
T Consensus 261 ~~~~sVvyvsfGS~~~~~~---~q~~ela~gLe~s--~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~-~w~-- 332 (451)
T PLN02410 261 QKKNSVIFVSLGSLALMEI---NEVMETASGLDSS--NQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIV-KWA-- 332 (451)
T ss_pred CCCCcEEEEEccccccCCH---HHHHHHHHHHHhc--CCCeEEEEccCcccccchhhcCChhHHHhccCCeEEE-ccC--
Confidence 4456789998788763111 1233333334332 346788765211 1000 0011111111244444 221
Q ss_pred hHHHHHHHccc--ceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 312 LKYDAFSASRV--ALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 312 ~~~~~~~~ADl--~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
.-.++++..++ +|+=.|-.|. |++.+|+|+|. .+...--+.-+++++
T Consensus 333 PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~-~P~~~DQ~~na~~~~ 382 (451)
T PLN02410 333 PQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMIC-KPFSSDQKVNARYLE 382 (451)
T ss_pred CHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEe-ccccccCHHHHHHHH
Confidence 33567877544 9999998665 99999999986 555444444466544
No 181
>PLN02534 UDP-glycosyltransferase
Probab=72.55 E-value=22 Score=36.95 Aligned_cols=119 Identities=13% Similarity=0.021 Sum_probs=63.3
Q ss_pred HHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc---ChHHH-----HHHHhhcCCCC
Q 016179 230 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR---HVENY-----ITGLIQKWPVP 301 (394)
Q Consensus 230 ~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~---~~~~~-----l~~~~~~~~~~ 301 (394)
..+-|.-.+++.+|.+.=||...-..+ .+.+.+.-|... +.+|+|+..+.. +..+. +.+.... ..
T Consensus 273 cl~wLd~~~~~sVvyvsfGS~~~~~~~---q~~e~a~gl~~~--~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~--~g 345 (491)
T PLN02534 273 CLEWLDSMKPRSVIYACLGSLCRLVPS---QLIELGLGLEAS--KKPFIWVIKTGEKHSELEEWLVKENFEERIKG--RG 345 (491)
T ss_pred HHHHHhcCCCCceEEEEecccccCCHH---HHHHHHHHHHhC--CCCEEEEEecCccccchhhhcCchhhHHhhcc--CC
Confidence 444444445567899987887631111 233333334322 347888875311 10110 1111111 12
Q ss_pred EEEecCCCcchHHHHHHHccc--ceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 302 SILVPGGSSNLKYDAFSASRV--ALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 302 v~~~~g~~~~~~~~~~~~ADl--~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
+.+ .+. .+ -.++++..++ +|+=.|..+. |+..+|+|+|. .+...-.+.-+++++
T Consensus 346 ~~v-~~w-~p-q~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~-~P~~~dq~~na~~~~ 402 (491)
T PLN02534 346 LLI-KGW-AP-QVLILSHPAIGGFLTHCGWNSTIEGICSGVPMIT-WPLFAEQFLNEKLIV 402 (491)
T ss_pred eec-cCC-CC-HHHHhcCCccceEEecCccHHHHHHHHcCCCEEe-ccccccHHHHHHHHH
Confidence 222 122 12 2567888777 8898887665 99999999886 565444444455554
No 182
>PLN02555 limonoid glucosyltransferase
Probab=71.60 E-value=18 Score=37.45 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=31.0
Q ss_pred HHHH--HHcccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 314 YDAF--SASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 314 ~~~~--~~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
.+++ .+..++|+=.|-.+. |++.+|+|||. .+.-.--+.-+++++
T Consensus 348 ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~-~P~~~DQ~~Na~~~~ 395 (480)
T PLN02555 348 EKVLAHPSVACFVTHCGWNSTMEALSSGVPVVC-FPQWGDQVTDAVYLV 395 (480)
T ss_pred HHHhCCCccCeEEecCCcchHHHHHHcCCCEEe-CCCccccHHHHHHHH
Confidence 4567 668889999997665 99999999996 454332233344443
No 183
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.91 E-value=21 Score=27.96 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=24.7
Q ss_pred HHHHHHHcccceehhhH--------HHHHHHHcCCCEEEEEcCChHH
Q 016179 313 KYDAFSASRVALCTSGT--------VAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 313 ~~~~~~~ADl~I~~SGt--------~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
++..+..||++|...+. +--+|--.|+|++.+ +...++
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~-~~~~~~ 87 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS-RSRGVS 87 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE-CCCCHH
Confidence 56677778888777652 112777889998864 434433
No 184
>PLN03004 UDP-glycosyltransferase
Probab=70.32 E-value=15 Score=37.66 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=32.2
Q ss_pred HHHHHHHccc--ceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 313 KYDAFSASRV--ALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 313 ~~~~~~~ADl--~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
-.++++.+++ +||=+|..+. |++.+|+|+|. .+.-.--+.-+++++
T Consensus 344 Q~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~-~P~~~DQ~~na~~~~ 392 (451)
T PLN03004 344 QVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVA-WPLYAEQRFNRVMIV 392 (451)
T ss_pred HHHHhCCCccceEeccCcchHHHHHHHcCCCEEe-ccccccchhhHHHHH
Confidence 3578999998 9999997665 99999999986 444332222344443
No 185
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.31 E-value=45 Score=32.71 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
+.+..+.++++++|+||++|. +...-.++.+.
T Consensus 66 v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia 97 (351)
T cd08170 66 IERLAEIARDNGADVVIGIGG-GKTLDTAKAVA 97 (351)
T ss_pred HHHHHHHHhhcCCCEEEEecC-chhhHHHHHHH
Confidence 344566777899999999985 45666666654
No 186
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=68.95 E-value=67 Score=31.01 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=65.3
Q ss_pred HHHHHhhhheeecCcccHH--HHHh-cCCCeEEE--c---CCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCC
Q 016179 169 KNLAAFVDHILCILPNEEA--ICRL-NGLAATFV--G---HPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGA 240 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~~--~~~~-~g~~~~~v--G---~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~ 240 (394)
+.+++++|.+.+-.+.... .+.+ .++|+.-- | ||--- + .|--.+++.+|- -+.
T Consensus 90 ~vls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~-L-----------------aDl~Ti~e~~g~-l~g 150 (301)
T TIGR00670 90 KTLSGYSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQT-L-----------------LDLYTIYEEFGR-LDG 150 (301)
T ss_pred HHHHHhCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHH-H-----------------HHHHHHHHHhCC-CCC
Confidence 4579999999887765432 2333 24454321 1 44210 0 111224455552 234
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHc
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 320 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~A 320 (394)
.+|+++|..+...+ ...++.++..+ ++.+.+++.+..+..+.+.+..++.+..+.+. +|+.++++.|
T Consensus 151 ~~va~vGD~~~~~v---~~Sl~~~~a~~-----g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~-----~d~~~a~~~a 217 (301)
T TIGR00670 151 LKIALVGDLKYGRT---VHSLAEALTRF-----GVEVYLISPEELRMPKEILEELKAKGIKVRET-----ESLEEVIDEA 217 (301)
T ss_pred CEEEEEccCCCCcH---HHHHHHHHHHc-----CCEEEEECCccccCCHHHHHHHHHcCCEEEEE-----CCHHHHhCCC
Confidence 67888887542211 22344444443 46666555432211112222333445445443 4789999999
Q ss_pred ccceehh
Q 016179 321 RVALCTS 327 (394)
Q Consensus 321 Dl~I~~S 327 (394)
|++.+.+
T Consensus 218 Dvvyt~~ 224 (301)
T TIGR00670 218 DVLYVTR 224 (301)
T ss_pred CEEEECC
Confidence 9999965
No 187
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=67.44 E-value=70 Score=31.92 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=75.3
Q ss_pred hHHHHhhcCCC---CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhh-------
Q 016179 227 SEDFKNKYSVP---SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ------- 296 (394)
Q Consensus 227 ~~~~r~~lgl~---~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~------- 296 (394)
+..+.+++|++ ++..+|.++.-... -++.++++++ +....+.++++.|... ..+...+.
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~Ye~~-----~l~~ll~~~~---~~~~pv~llvp~g~~~---~~~~~~~~~~~~~~g 236 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFCYENA-----ALASLLDAWA---ASPKPVHLLVPEGRAL---NSLAAWLGDALLQAG 236 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEeCCch-----HHHHHHHHHh---cCCCCeEEEecCCccH---HHHHHHhccccccCc
Confidence 56777899986 56778888853322 1444555544 3334678777777532 22332221
Q ss_pred ----cCCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEE-EEEcCC------hHHHHHHHh
Q 016179 297 ----KWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCV-VAYRAH------FLTEWFIRY 357 (394)
Q Consensus 297 ----~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~I-v~y~~~------~~~~~~a~~ 357 (394)
...+.++++++...++..+++.+||+-+.|-==+-+=|...|+|.| =+|+-. .+..|+.++
T Consensus 237 ~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGEDSfVRAqwAgkPFvWhIYpQ~d~aHl~KL~AFL~~y 308 (374)
T PF10093_consen 237 DSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRGEDSFVRAQWAGKPFVWHIYPQEDDAHLDKLDAFLDRY 308 (374)
T ss_pred cccccCCeEEEECCCCCHHHHHHHHHhCccceEecchHHHHHHHhCCCceEecCcCchhhHHHHHHHHHHHH
Confidence 1112355565432567889999999999997667779999999999 447643 345555443
No 188
>PLN02173 UDP-glucosyl transferase family protein
Probab=66.31 E-value=19 Score=36.82 Aligned_cols=113 Identities=11% Similarity=0.099 Sum_probs=60.7
Q ss_pred cCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcC--h-HHHHHHHhhcCCCCEEEecCCCc
Q 016179 234 YSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--V-ENYITGLIQKWPVPSILVPGGSS 310 (394)
Q Consensus 234 lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~--~-~~~l~~~~~~~~~~v~~~~g~~~ 310 (394)
+.-.+++.+|.+.=||...--. ..+.+.+.-|. +..|+|+...... + +..+++ .. +.++.+. +. .
T Consensus 258 Ld~~~~~svvyvsfGS~~~~~~---~~~~ela~gLs----~~~flWvvr~~~~~~lp~~~~~~-~~--~~~~~i~-~W-~ 325 (449)
T PLN02173 258 LDKRPQGSVVYIAFGSMAKLSS---EQMEEIASAIS----NFSYLWVVRASEESKLPPGFLET-VD--KDKSLVL-KW-S 325 (449)
T ss_pred HhcCCCCceEEEEecccccCCH---HHHHHHHHHhc----CCCEEEEEeccchhcccchHHHh-hc--CCceEEe-CC-C
Confidence 3334556789997788653111 12223333342 3447776642111 1 111111 11 2245444 32 1
Q ss_pred chHHHHHHHcc--cceehhhHHH-HHHHHcCCCEEEEEcCChHHHHHHHhhcc
Q 016179 311 NLKYDAFSASR--VALCTSGTVA-VELQLARLPCVVAYRAHFLTEWFIRYKAK 360 (394)
Q Consensus 311 ~~~~~~~~~AD--l~I~~SGt~t-lEa~a~G~P~Iv~y~~~~~~~~~a~~~vk 360 (394)
+ -.++++..+ ++||=.|-.+ +|++.+|+|+|. .+.-.--+.-++++++
T Consensus 326 P-Q~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~-~P~~~DQ~~Na~~v~~ 376 (449)
T PLN02173 326 P-QLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVA-MPQWTDQPMNAKYIQD 376 (449)
T ss_pred C-HHHHhCCCccceEEecCccchHHHHHHcCCCEEe-cCchhcchHHHHHHHH
Confidence 2 346787766 8899888755 499999999886 5554444444666653
No 189
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=65.56 E-value=68 Score=31.76 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 106 KETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
.++.+.++++++|+||++|. +...-+++.+.
T Consensus 74 ~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 104 (366)
T PRK09423 74 DRLVAIAEENGCDVVIGIGG-GKTLDTAKAVA 104 (366)
T ss_pred HHHHHHHHhcCCCEEEEecC-hHHHHHHHHHH
Confidence 34566777889999999985 45666666554
No 190
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=65.49 E-value=25 Score=36.10 Aligned_cols=121 Identities=10% Similarity=0.053 Sum_probs=62.3
Q ss_pred HHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc--------ChHHH---HHHHhhcC
Q 016179 230 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR--------HVENY---ITGLIQKW 298 (394)
Q Consensus 230 ~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~--------~~~~~---l~~~~~~~ 298 (394)
..+-++-.+++.+|.+.=||...--.+.+..+..+++.. + .+|+|+..+.. ...+. .+...+..
T Consensus 251 ~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s----~-~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~ 325 (455)
T PLN02152 251 YTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEG----K-RPFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL 325 (455)
T ss_pred HHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHc----C-CCeEEEEecCcccccccccccccccccchhHHHhc
Confidence 444444445567888877887531111122333343332 2 36788764310 00000 11111112
Q ss_pred CCCEEEecCCCcchHHHHHHHcc--cceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 299 PVPSILVPGGSSNLKYDAFSASR--VALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 299 ~~~v~~~~g~~~~~~~~~~~~AD--l~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
..+..+. +. .++ .++++..+ ++||=.|-.+. |++.+|+|+|. .+...--+.-+++++
T Consensus 326 ~~~g~v~-~W-~PQ-~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~-~P~~~DQ~~na~~~~ 385 (455)
T PLN02152 326 EEVGMIV-SW-CSQ-IEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVA-FPMWSDQPANAKLLE 385 (455)
T ss_pred cCCeEEE-ee-CCH-HHHhCCcccceEEeeCCcccHHHHHHcCCCEEe-ccccccchHHHHHHH
Confidence 2233333 22 123 45787777 68999997665 99999999986 455443334456555
No 191
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=64.11 E-value=11 Score=39.67 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=34.0
Q ss_pred chHHHHHHHcccceehh-----hHHHHHHHHcCCCEEEEEcCChHHHHHHH
Q 016179 311 NLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWFIR 356 (394)
Q Consensus 311 ~~~~~~~~~ADl~I~~S-----Gt~tlEa~a~G~P~Iv~y~~~~~~~~~a~ 356 (394)
-+-++++..+|+.|-.| |-+-+||+++|+|+|. ...+++.-|+.+
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsIT-TnLsGFG~~~~~ 510 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSIT-TNLSGFGCWMQE 510 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEE-ETTBHHHHHHHT
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceee-ccchhHHHHHHH
Confidence 35689999999999999 9999999999999995 788888877654
No 192
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=63.84 E-value=17 Score=32.11 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCCEEEEeCCC-CchHHHH
Q 016179 106 KETIEAALLFRPHAVVTVDSK-GFSFRLL 133 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~~-~f~~~la 133 (394)
.++.+.+++.+||++++.+|. -++-.+.
T Consensus 69 ~~~~~~l~~~~~Dl~v~~~~~~il~~~~l 97 (181)
T PF00551_consen 69 EELLELLESLNPDLIVVAGYGRILPKEFL 97 (181)
T ss_dssp HHHHHHHHHTT-SEEEESS-SS---HHHH
T ss_pred hHHHHHHHhhccceeehhhhHHHhhhhhh
Confidence 456788899999999998863 2344443
No 193
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=63.64 E-value=92 Score=30.41 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=41.3
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEA 111 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~ 111 (394)
.|++|+++......+...+.+.|++.. + +.++..+.+ -...+.++.+.
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~-~~~~~~~~~------------------------------~~~~v~~~~~~ 73 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDEG-E-VDVVIVEDA------------------------------TYEEVEKVESS 73 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC-C-eEEEEeCCC------------------------------CHHHHHHHHHH
Confidence 567888777655544455666666544 3 433322111 01223334556
Q ss_pred HHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 112 ALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 112 i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
++++++|+||++|. +...-+++.+.
T Consensus 74 ~~~~~~d~iIaiGG-Gs~~D~aK~~a 98 (339)
T cd08173 74 ARDIGADFVIGVGG-GRVIDVAKVAA 98 (339)
T ss_pred hhhcCCCEEEEeCC-chHHHHHHHHH
Confidence 66789999999985 35566665554
No 194
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=62.71 E-value=62 Score=32.84 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=16.3
Q ss_pred CCceEEEEeCCchHHHHHHHH
Q 016179 30 GELRVFIVAGEVSGDSIGSRL 50 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l 50 (394)
++||||++++|+.-|-.+.++
T Consensus 3 ~~~kvLviG~g~rehal~~~~ 23 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFAL 23 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHH
Confidence 468999999988778665555
No 195
>PLN02764 glycosyltransferase family protein
Probab=62.48 E-value=32 Score=35.34 Aligned_cols=117 Identities=13% Similarity=-0.003 Sum_probs=60.4
Q ss_pred hhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCc---ChHHH----HHHHhhcCCCCEEE
Q 016179 232 NKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR---HVENY----ITGLIQKWPVPSIL 304 (394)
Q Consensus 232 ~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~---~~~~~----l~~~~~~~~~~v~~ 304 (394)
+=|+-.++..+|.+-=||... +. -..+.+.+..|.. .+..|+++.-+.. ..... +++..++-+ + +
T Consensus 249 ~WLD~q~~~sVvyvsfGS~~~-~~--~~q~~ela~gL~~--s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG--~-v 320 (453)
T PLN02764 249 KWLSGYEPDSVVFCALGSQVI-LE--KDQFQELCLGMEL--TGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRG--V-V 320 (453)
T ss_pred HHHhCCCCCceEEEeeccccc-CC--HHHHHHHHHHHHh--CCCCeEEEEeCCCCCcchhhhCCcchHhhhccCC--c-E
Confidence 334444567789998788753 11 1234444445443 2444555553210 10000 111111212 2 2
Q ss_pred ecCCCcchHHHHHHHc--ccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 305 VPGGSSNLKYDAFSAS--RVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 305 ~~g~~~~~~~~~~~~A--Dl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
+.+.. .-.++++.. +++||=.|..+. |++.+|+|+|. .+...--+..+++++
T Consensus 321 ~~~W~--PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~-~P~~~DQ~~na~~l~ 375 (453)
T PLN02764 321 WGGWV--QQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVL-VPQLGDQVLNTRLLS 375 (453)
T ss_pred EeCCC--CHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEe-CCcccchHHHHHHHH
Confidence 22221 234677764 569999997665 99999999986 555443344456554
No 196
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=60.70 E-value=79 Score=31.00 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCEEEEeCCCCchHHHHHHHHHh
Q 016179 108 TIEAALLFRPHAVVTVDSKGFSFRLLKQLRAR 139 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~ 139 (394)
+.+..++.++|+||++|. +...-.++.....
T Consensus 70 ~~~~~~~~~~d~iiavGG-Gs~~D~aK~ia~~ 100 (345)
T cd08171 70 LKKNPAVQEADMIFAVGG-GKAIDTVKVLADK 100 (345)
T ss_pred HHHHHhhcCCCEEEEeCC-cHHHHHHHHHHHH
Confidence 445667889999999985 4566777665543
No 197
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=60.50 E-value=26 Score=31.52 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=25.5
Q ss_pred CceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEec
Q 016179 31 ELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVG 68 (394)
Q Consensus 31 ~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~g 68 (394)
..||++.+-++-.|-.+..++..+-+.. + .+++..|
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~-G-~~vi~lG 117 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEAN-G-FEVIDLG 117 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHC-C-CEEEECC
Confidence 4578888888878888888777655443 2 5666665
No 198
>PRK06849 hypothetical protein; Provisional
Probab=60.30 E-value=36 Score=33.85 Aligned_cols=79 Identities=6% Similarity=0.054 Sum_probs=42.7
Q ss_pred CCCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChh--hH--hccCccccccCcceeccHHHhhhhHHHHHHH
Q 016179 29 DGELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSM--MS--EQGMKSLFPMEDIAVMGIWELLPHIYKFRVR 104 (394)
Q Consensus 29 ~~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~--m~--~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~ 104 (394)
+++|+|||+++++. .+..+++.|++.+ .+++++.... .. ...+...+. ++.-.. . .-..
T Consensus 2 ~~~~~VLI~G~~~~---~~l~iar~l~~~G---~~Vi~~d~~~~~~~~~s~~~d~~~~---~p~p~~-d-------~~~~ 64 (389)
T PRK06849 2 NTKKTVLITGARAP---AALELARLFHNAG---HTVILADSLKYPLSRFSRAVDGFYT---IPSPRW-D-------PDAY 64 (389)
T ss_pred CCCCEEEEeCCCcH---HHHHHHHHHHHCC---CEEEEEeCCchHHHHHHHhhhheEE---eCCCCC-C-------HHHH
Confidence 46789999876653 5778999998864 4555443321 10 111111111 000000 0 1122
Q ss_pred HHHHHHHHHhcCCCEEEEeC
Q 016179 105 LKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~ 124 (394)
+..+.++++++++|+||.+.
T Consensus 65 ~~~L~~i~~~~~id~vIP~~ 84 (389)
T PRK06849 65 IQALLSIVQRENIDLLIPTC 84 (389)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 34466788899999999874
No 199
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=60.21 E-value=82 Score=31.81 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=64.6
Q ss_pred ChHHHHhhcC-C----CCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC
Q 016179 226 NSEDFKNKYS-V----PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV 300 (394)
Q Consensus 226 ~~~~~r~~lg-l----~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~ 300 (394)
.+....+++| . .++.|.|-+=+-|-| |++...| .+++|.+++|++.+++-+.-+-. .+..++.+.+. .
T Consensus 30 y~~r~~eRfg~~~~~~~~~~p~vWiHaaSVG-Ev~a~~p----Lv~~l~~~~P~~~ilvTt~T~Tg-~e~a~~~~~~~-v 102 (419)
T COG1519 30 YRKRLGERFGFYKPPVKPEGPLVWIHAASVG-EVLAALP----LVRALRERFPDLRILVTTMTPTG-AERAAALFGDS-V 102 (419)
T ss_pred HHHHHHHHhcccCCCCCCCCCeEEEEecchh-HHHHHHH----HHHHHHHhCCCCCEEEEecCccH-HHHHHHHcCCC-e
Confidence 3455667777 2 245577888777776 5554445 45567778899998887754332 23344433221 2
Q ss_pred CEEEecCCCcchHHHH--HHHcccceehhhH---HHH-HHHHcCCCEEEEE
Q 016179 301 PSILVPGGSSNLKYDA--FSASRVALCTSGT---VAV-ELQLARLPCVVAY 345 (394)
Q Consensus 301 ~v~~~~g~~~~~~~~~--~~~ADl~I~~SGt---~tl-Ea~a~G~P~Iv~y 345 (394)
...+++.-...-+... .-.-|++|..=+- .++ |+-..|+|.+++.
T Consensus 103 ~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 103 IHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred EEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEe
Confidence 2334442100011222 2356777766542 555 9999999999874
No 200
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=59.85 E-value=95 Score=30.86 Aligned_cols=120 Identities=14% Similarity=0.136 Sum_probs=73.7
Q ss_pred hHHHHhhcCCC--CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhh--------
Q 016179 227 SEDFKNKYSVP--SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ-------- 296 (394)
Q Consensus 227 ~~~~r~~lgl~--~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~-------- 296 (394)
+..+.+++|++ ++..+|.++. .- +..++.++++.+ +...++..+++.|.. . ..+...+.
T Consensus 167 ~~~~~~~lg~~~~~~~~~vSLF~--Ye---~~al~~ll~~~~---~~~~pv~lLvp~Gr~--~-~~v~~~l~~~~~~~g~ 235 (371)
T TIGR03837 167 QRALLRRLGVGPEPDALLVSLFC--YE---NAALPALLDALA---QSGSPVHLLVPEGRA--L-AAVAAWLGDALLAAGD 235 (371)
T ss_pred HHHHHHHcCCCCCCCCeEEEEEe--cC---ChhHHHHHHHHH---hCCCCeEEEecCCcc--H-HHHHHHhCccccCCcc
Confidence 34566788986 5667788774 22 112455555544 333467777777753 2 22333321
Q ss_pred --c-CCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEE-EEEcCC------hHHHHHHHh
Q 016179 297 --K-WPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCV-VAYRAH------FLTEWFIRY 357 (394)
Q Consensus 297 --~-~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~I-v~y~~~------~~~~~~a~~ 357 (394)
. ..+.++++++...++..+++-+||+-+.|-==+-+=|.-+|+|+| =+|+-. .+..|+.++
T Consensus 236 ~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVRGEDSFVRAqWAgkPfvWhIYPQeddaHl~KL~AFL~~y 306 (371)
T TIGR03837 236 VHRRGALTVAVLPFVPQDDYDRLLWACDLNFVRGEDSFVRAQWAGKPFVWHIYPQEEDAHLAKLEAFLDLY 306 (371)
T ss_pred ccccCceEEEEcCCCChhhHHHHHHhChhcEeechhHHHHHHHcCCCceeecccCchhhHHHHHHHHHHHH
Confidence 0 112456665432467889999999999997777779999999999 447643 345555443
No 201
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=59.41 E-value=1.2e+02 Score=29.42 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=35.0
Q ss_pred hhcCCCCEEEecCCCcchHHHHHH--Hccccee-------------hhhHHHH--HHHHcCCCEEEEEc
Q 016179 295 IQKWPVPSILVPGGSSNLKYDAFS--ASRVALC-------------TSGTVAV--ELQLARLPCVVAYR 346 (394)
Q Consensus 295 ~~~~~~~v~~~~g~~~~~~~~~~~--~ADl~I~-------------~SGt~tl--Ea~a~G~P~Iv~y~ 346 (394)
+.+.+.++.++.. ..+..+|+ ..|.++. +.||..+ =|-..|+|++++-+
T Consensus 174 L~~~gI~vtlI~D---sa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~ 239 (303)
T TIGR00524 174 LMQDGIDVTLITD---SMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAP 239 (303)
T ss_pred HHHCCCCEEEECh---hHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEecc
Confidence 4456778888763 45778888 7887765 5588665 55678999998743
No 202
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=59.38 E-value=1.4e+02 Score=30.50 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=65.4
Q ss_pred HHHHHhhhheeecCcccH--HHHHh-cCCCeEEEc-----CCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCC-C--
Q 016179 169 KNLAAFVDHILCILPNEE--AICRL-NGLAATFVG-----HPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSV-P-- 237 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~--~~~~~-~g~~~~~vG-----~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl-~-- 237 (394)
+.+++++|.+.+-.+... ..+.+ ..+|+.--| ||--- +. |--.+++++|- .
T Consensus 177 rvLs~y~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQa-La-----------------Dl~Ti~E~~g~~g~~ 238 (429)
T PRK11891 177 RVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQA-LL-----------------DLYTIQREFSRLGKI 238 (429)
T ss_pred HHHHHhCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHH-HH-----------------HHHHHHHHhCccCCC
Confidence 457999999988876532 23333 245554322 55211 00 11123445531 1
Q ss_pred CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHH
Q 016179 238 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF 317 (394)
Q Consensus 238 ~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 317 (394)
-+..+|+++|-..-. +....++.++.. ..+..+.+++.+..+..+.+.+.+.+.+..+.+. +|..+++
T Consensus 239 l~G~kIa~vGD~~~~---rv~~Sl~~~la~----~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~-----~d~~eav 306 (429)
T PRK11891 239 VDGAHIALVGDLKYG---RTVHSLVKLLAL----YRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQT-----DDLAAGL 306 (429)
T ss_pred cCCCEEEEECcCCCC---hHHHHHHHHHHH----hcCCEEEEECCCccccCHHHHHHHHhcCCeEEEE-----cCHHHHh
Confidence 134578888754211 112223333332 2356666655433222222222333334445543 4788999
Q ss_pred HHcccceehhh
Q 016179 318 SASRVALCTSG 328 (394)
Q Consensus 318 ~~ADl~I~~SG 328 (394)
..||++.+.++
T Consensus 307 ~~ADVVYt~~~ 317 (429)
T PRK11891 307 RGADVVYATRI 317 (429)
T ss_pred CCCCEEEEcCc
Confidence 99999999775
No 203
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=59.12 E-value=68 Score=30.67 Aligned_cols=35 Identities=9% Similarity=0.047 Sum_probs=23.7
Q ss_pred CCceEEEEeCCchH-HH---H-HHHHHHHHHhcCCCCeEEE
Q 016179 30 GELRVFIVAGEVSG-DS---I-GSRLMSAMKKLAPLPVSFS 65 (394)
Q Consensus 30 ~~~kIlI~aG~~sG-h~---~-a~~l~~~L~~~~~~~~~~~ 65 (394)
+++||.++.||.|. |- . |.+++++|++...+ +..+
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~-~~~~ 41 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYD-AVGV 41 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCE-EEEE
Confidence 57789999888665 33 2 66788888876543 4333
No 204
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=58.59 E-value=59 Score=34.36 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=60.5
Q ss_pred CCceEEE-EeCC--chHHHHHHHHHHHHHhcCCCCeEEEEec-Ch-hh-HhccCccccccCccee------ccHHHhhhh
Q 016179 30 GELRVFI-VAGE--VSGDSIGSRLMSAMKKLAPLPVSFSGVG-GS-MM-SEQGMKSLFPMEDIAV------MGIWELLPH 97 (394)
Q Consensus 30 ~~~kIlI-~aG~--~sGh~~a~~l~~~L~~~~~~~~~~~g~g-g~-~m-~~~g~~~~~~~~~l~~------~G~~~~l~~ 97 (394)
..+||-| ++|| .|||..-..+.+++++.+++ .+++|+- |. .+ +..-+ ++..-.+ .|+ +.+..
T Consensus 95 ~~~~IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~-~~vyG~~~G~~GLl~~~~v----~Lt~~~v~~~~n~GG~-dlLGS 168 (568)
T PLN02251 95 QKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKG-SVLYGFKGGPAGIMKCKYV----ELTAEFIYPYRNQGGF-DMICS 168 (568)
T ss_pred ccceEEEECcCCCchhHHHHHHHHHHHHHHhCCC-CEEEEEccChHHhcCCCeE----ECCHHHhhhhhhCCCc-eEecc
Confidence 3467744 4444 56788766788888777665 7787664 32 22 22111 1111111 222 11110
Q ss_pred HH---HHHHHHHHHHHHHHhcCCCEEEEeCCCCch---HHHHHHHHHhc-cccCCCCCeEEEe
Q 016179 98 IY---KFRVRLKETIEAALLFRPHAVVTVDSKGFS---FRLLKQLRARY-SHERLNGPAHFHY 153 (394)
Q Consensus 98 ~~---~~~~~~~~~~~~i~~~~PD~Vi~~~~~~f~---~~la~~l~~~~-~~~~~~ip~~~~y 153 (394)
-+ .--..++++.+.+++.+.|.+|.+|.-+.+ ..++..+++.+ ...+-++|.+++-
T Consensus 169 ~R~k~~~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDN 231 (568)
T PLN02251 169 GRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDG 231 (568)
T ss_pred cCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeC
Confidence 00 112346788899999999999988753322 23333333232 1222366765553
No 205
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=58.42 E-value=36 Score=29.83 Aligned_cols=19 Identities=5% Similarity=0.113 Sum_probs=16.4
Q ss_pred chHHHHHHHcccceehhhH
Q 016179 311 NLKYDAFSASRVALCTSGT 329 (394)
Q Consensus 311 ~~~~~~~~~ADl~I~~SGt 329 (394)
++..+.+..||++|+..|.
T Consensus 79 ~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 79 KNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred hhHHHHHhhCCEEEEcCCC
Confidence 4678899999999999886
No 206
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=58.07 E-value=81 Score=25.18 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=17.8
Q ss_pred eEEEEeCCchHHHHHHH-HHHHHHhcCCCCeEEE
Q 016179 33 RVFIVAGEVSGDSIGSR-LMSAMKKLAPLPVSFS 65 (394)
Q Consensus 33 kIlI~aG~~sGh~~a~~-l~~~L~~~~~~~~~~~ 65 (394)
|+++++-+.--|-.+.. ++..|++.+.+ +.++
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~-v~~~ 34 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHE-VDIL 34 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBE-EEEE
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCe-EEEE
Confidence 45666666556666554 66667665432 4444
No 207
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=57.78 E-value=48 Score=26.37 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=20.4
Q ss_pred chHHHHHHHcccceehhhHHH----H--HHHHcCCCEEEEE
Q 016179 311 NLKYDAFSASRVALCTSGTVA----V--ELQLARLPCVVAY 345 (394)
Q Consensus 311 ~~~~~~~~~ADl~I~~SGt~t----l--Ea~a~G~P~Iv~y 345 (394)
.+..+.+..+|+++..+=..- + .+.-.|+|+.++.
T Consensus 39 ~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 39 GSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 345555666676666653311 2 3456689988763
No 208
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=56.68 E-value=1.1e+02 Score=29.97 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
+.++.+.++++++|+||++|. +...-.++.+.
T Consensus 66 v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~ia 97 (349)
T cd08550 66 VVKALCGAEEQEADVIIGVGG-GKTLDTAKAVA 97 (349)
T ss_pred HHHHHHHHHhcCCCEEEEecC-cHHHHHHHHHH
Confidence 344667777889999999985 45666666654
No 209
>PLN02527 aspartate carbamoyltransferase
Probab=56.68 E-value=1.6e+02 Score=28.59 Aligned_cols=129 Identities=9% Similarity=0.008 Sum_probs=65.6
Q ss_pred HHHHHhhhheeecCcccH--HHHHhc-CCCeEEE-----cCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCC
Q 016179 169 KNLAAFVDHILCILPNEE--AICRLN-GLAATFV-----GHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGA 240 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~--~~~~~~-g~~~~~v-----G~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~ 240 (394)
+.+++++|.+.+-.+... ..+.++ .+|+.-- .||--- + .|--.+++++|- -+.
T Consensus 91 ~vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~-L-----------------aDl~Ti~e~~g~-l~g 151 (306)
T PLN02527 91 RTVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQA-L-----------------LDVYTIQREIGR-LDG 151 (306)
T ss_pred HHHHHhCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHH-H-----------------HHHHHHHHHhCC-cCC
Confidence 457999999988876543 233332 3444321 244210 0 011224455552 234
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHc
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 320 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~A 320 (394)
.+|+++|-..-+ +....++.++.. ..++.+.+++.+.-+..+.+.+.+++.+.++.+. +++.+++..|
T Consensus 152 ~kva~vGD~~~~---rv~~Sl~~~~~~----~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~-----~d~~~a~~~a 219 (306)
T PLN02527 152 IKVGLVGDLANG---RTVRSLAYLLAK----YEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEES-----SDLMEVASKC 219 (306)
T ss_pred CEEEEECCCCCC---hhHHHHHHHHHh----cCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEE-----cCHHHHhCCC
Confidence 578888754221 112233334333 2456666665432211222333334444445443 4788999999
Q ss_pred ccceehhh
Q 016179 321 RVALCTSG 328 (394)
Q Consensus 321 Dl~I~~SG 328 (394)
|++.+...
T Consensus 220 Dvvyt~~~ 227 (306)
T PLN02527 220 DVLYQTRI 227 (306)
T ss_pred CEEEECCc
Confidence 99999653
No 210
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=55.72 E-value=17 Score=37.62 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=43.8
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHH-HhhcCCCCEEEecCCCcchHHHHH--
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITG-LIQKWPVPSILVPGGSSNLKYDAF-- 317 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~-~~~~~~~~v~~~~g~~~~~~~~~~-- 317 (394)
.+|.++||+||.-++ ..+++++... ..++++.+- +|++.--.++. ..+.|..+|+++.. ||..+-
T Consensus 369 tVimvlGaGRGPLv~----~~lkaa~~~~---RkVklyavE-KNPNAivtL~~~n~~~W~~~Vtii~~----DMR~w~ap 436 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVD----ASLKAAEETD---RKVKLYAVE-KNPNAIVTLQNRNFECWDNRVTIISS----DMRKWNAP 436 (649)
T ss_pred EEEEEecCCCccHHH----HHHHHHHHhc---CceEEEEEe-cCcchhhhhhhhchhhhcCeeEEEec----cccccCCc
Confidence 578999999996433 3456666554 256655543 44543223322 23456667888753 676663
Q ss_pred -HHccccee
Q 016179 318 -SASRVALC 325 (394)
Q Consensus 318 -~~ADl~I~ 325 (394)
-.+|++|+
T Consensus 437 ~eq~DI~VS 445 (649)
T KOG0822|consen 437 REQADIIVS 445 (649)
T ss_pred hhhccchHH
Confidence 35788776
No 211
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=55.50 E-value=1.4e+02 Score=29.28 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
+.++.+.+++.++|+||++|. |...-+++.+.
T Consensus 76 v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~vA 107 (350)
T PRK00843 76 VEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLAA 107 (350)
T ss_pred HHHHHHHhhccCCCEEEEeCC-chHHHHHHHHH
Confidence 334556666778999999975 45666665543
No 212
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=55.37 E-value=94 Score=30.72 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=57.9
Q ss_pred CceEEEEeCC--c-hHHHHHHHHHHHHHhcCCCCeEEEEec--ChhhHhccCccc--cccCcce-eccHH--HhhhhHHH
Q 016179 31 ELRVFIVAGE--V-SGDSIGSRLMSAMKKLAPLPVSFSGVG--GSMMSEQGMKSL--FPMEDIA-VMGIW--ELLPHIYK 100 (394)
Q Consensus 31 ~~kIlI~aG~--~-sGh~~a~~l~~~L~~~~~~~~~~~g~g--g~~m~~~g~~~~--~~~~~l~-~~G~~--~~l~~~~~ 100 (394)
++||.|.++| . |+|---.++.+.+... + .+++|+- ...+-+..+..+ .+...+. ..|.. ..-..-++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g-~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~ 78 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKE--G-LEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFK 78 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHc--C-CEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCcc
Confidence 4677654443 3 4455566788887765 3 7777653 123322212110 1111111 11211 00000011
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEE
Q 016179 101 FRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFH 152 (394)
Q Consensus 101 ~~~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~ 152 (394)
......++.+-+++...|.+|.+|.- -+..-|+.|...+....-++|-+++
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGD-gS~~gA~~Lae~~~i~vVGvPkTID 129 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGD-GSYTGAALLAEEGGIPVVGVPKTID 129 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHhcCCcEEecCCCcc
Confidence 22334578888999999999988753 3444455666554222235665444
No 213
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=53.98 E-value=1.8e+02 Score=28.68 Aligned_cols=130 Identities=10% Similarity=0.129 Sum_probs=63.8
Q ss_pred HHHHHhhhheeecCcccHH--HHHh-cCCCeEE--Ec---CCCchhhhhhcCCCCCCCcccccCCChHHHHhhc---CCC
Q 016179 169 KNLAAFVDHILCILPNEEA--ICRL-NGLAATF--VG---HPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKY---SVP 237 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~~--~~~~-~g~~~~~--vG---~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l---gl~ 237 (394)
+.+++++|.+.+-.+.... .+.+ ..+|+.- .| ||--- +. |--.+++++ |-+
T Consensus 95 rvls~y~D~IviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQa-La-----------------Dl~Ti~e~~~~~g~~ 156 (338)
T PRK08192 95 RVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQA-LL-----------------DLFTIQKELAHAGRG 156 (338)
T ss_pred HHHHHcCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHH-HH-----------------HHHHHHHHhhccCCC
Confidence 4579999999888776532 3333 2355432 23 55210 00 111233333 211
Q ss_pred CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHH
Q 016179 238 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF 317 (394)
Q Consensus 238 ~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 317 (394)
-+..+|+++|-.+-. +....++.++.. ..++.+.+++.+.-+..+.+-+.+++.+..+.+. +++.+++
T Consensus 157 l~g~kia~vGD~~~~---rv~~Sl~~~l~~----~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~-----~d~~ea~ 224 (338)
T PRK08192 157 IDGMHIAMVGDLKFG---RTVHSLSRLLCM----YKNVSFTLVSPKELAMPDYVISDIENAGHKITIT-----DQLEGNL 224 (338)
T ss_pred cCCCEEEEECcCCCC---chHHHHHHHHHH----hcCCEEEEECCccccCCHHHHHHHHHcCCeEEEE-----cCHHHHH
Confidence 234678888753211 112223333222 2356666665443221122222233444445443 4788999
Q ss_pred HHcccceehhh
Q 016179 318 SASRVALCTSG 328 (394)
Q Consensus 318 ~~ADl~I~~SG 328 (394)
..||++.+..+
T Consensus 225 ~~aDvvyt~~~ 235 (338)
T PRK08192 225 DKADILYLTRI 235 (338)
T ss_pred ccCCEEEEcCc
Confidence 99999999653
No 214
>PLN03015 UDP-glucosyl transferase
Probab=53.79 E-value=62 Score=33.38 Aligned_cols=45 Identities=16% Similarity=0.014 Sum_probs=29.9
Q ss_pred HHHHHHcc--cceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhhc
Q 016179 314 YDAFSASR--VALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 359 (394)
Q Consensus 314 ~~~~~~AD--l~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~v 359 (394)
.++++... .+||=.|-.+. |+..+|+|||. .+.-.--+.-+++++
T Consensus 346 ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~-~P~~~DQ~~na~~~~ 393 (470)
T PLN03015 346 VEILSHRSIGGFLSHCGWSSVLESLTKGVPIVA-WPLYAEQWMNATLLT 393 (470)
T ss_pred HHHhccCccCeEEecCCchhHHHHHHcCCCEEe-cccccchHHHHHHHH
Confidence 35666654 58898887664 99999999886 555433333355443
No 215
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=53.78 E-value=1.3e+02 Score=26.60 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=14.7
Q ss_pred chHHHHHHHcccceehhhH
Q 016179 311 NLKYDAFSASRVALCTSGT 329 (394)
Q Consensus 311 ~~~~~~~~~ADl~I~~SGt 329 (394)
++..++++.+|++|+.+..
T Consensus 89 ~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 89 AARAAAIKGADVVFAAGAA 107 (194)
T ss_pred HHHHHHHhcCCEEEECCCC
Confidence 4567889999999987643
No 216
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=53.41 E-value=18 Score=34.37 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=33.2
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEA 111 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~ 111 (394)
|||||+++.+ ..|.+|.+.|+++ + .++++.+... +++.+ ...+.++
T Consensus 1 MriLI~GasG---~lG~~l~~~l~~~--~-~~v~~~~r~~---------~dl~d-------------------~~~~~~~ 46 (286)
T PF04321_consen 1 MRILITGASG---FLGSALARALKER--G-YEVIATSRSD---------LDLTD-------------------PEAVAKL 46 (286)
T ss_dssp EEEEEETTTS---HHHHHHHHHHTTT--S-EEEEEESTTC---------S-TTS-------------------HHHHHHH
T ss_pred CEEEEECCCC---HHHHHHHHHHhhC--C-CEEEEeCchh---------cCCCC-------------------HHHHHHH
Confidence 7999988665 2366777777763 2 6778775321 11111 1123466
Q ss_pred HHhcCCCEEEEeC
Q 016179 112 ALLFRPHAVVTVD 124 (394)
Q Consensus 112 i~~~~PD~Vi~~~ 124 (394)
+++.+||+||.+.
T Consensus 47 ~~~~~pd~Vin~a 59 (286)
T PF04321_consen 47 LEAFKPDVVINCA 59 (286)
T ss_dssp HHHH--SEEEE--
T ss_pred HHHhCCCeEeccc
Confidence 6778999999874
No 217
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=53.41 E-value=61 Score=31.08 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=41.8
Q ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecC--hhh----HhccCccc-cccCcceeccHHHhhhhHHHHH
Q 016179 30 GELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGG--SMM----SEQGMKSL-FPMEDIAVMGIWELLPHIYKFR 102 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg--~~m----~~~g~~~~-~~~~~l~~~G~~~~l~~~~~~~ 102 (394)
.+|||.|.+.++ |+.. .+|+++.+...-+ .++..+.. +.. ++.|++.. ++... +. ..
T Consensus 88 ~~~ri~vl~Sg~-g~nl-~al~~~~~~~~~~-~~i~~visn~~~~~~lA~~~gIp~~~~~~~~-------~~------~~ 151 (286)
T PRK13011 88 ARPKVLIMVSKF-DHCL-NDLLYRWRIGELP-MDIVGVVSNHPDLEPLAAWHGIPFHHFPITP-------DT------KP 151 (286)
T ss_pred cCceEEEEEcCC-cccH-HHHHHHHHcCCCC-cEEEEEEECCccHHHHHHHhCCCEEEeCCCc-------Cc------hh
Confidence 467887766664 5444 4566666554322 56555433 222 34455432 11100 00 00
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCC
Q 016179 103 VRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 103 ~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
..-.++.+.+++++||++++.+|
T Consensus 152 ~~~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 152 QQEAQVLDVVEESGAELVVLARY 174 (286)
T ss_pred hhHHHHHHHHHHhCcCEEEEeCh
Confidence 01123567788999999999876
No 218
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=53.26 E-value=1.1e+02 Score=30.72 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=16.0
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhc
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKL 57 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~ 57 (394)
|||+|+++|+..|- |++.|++.
T Consensus 1 ~kvliiG~G~~~~~----l~~~l~~~ 22 (420)
T PRK00885 1 MKVLVIGSGGREHA----LAWKLAQS 22 (420)
T ss_pred CEEEEECCCHHHHH----HHHHHHhC
Confidence 79999999977774 55555553
No 219
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=53.26 E-value=82 Score=31.27 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHHHHH
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLLKQL 136 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l 136 (394)
+.+..+..++.++|+||++|. +...-.++.+
T Consensus 64 v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~i 94 (374)
T cd08183 64 VDAAVAEARNAGCDVVIAIGG-GSVIDAGKAI 94 (374)
T ss_pred HHHHHHHHHhcCCCEEEEecC-chHHHHHHHH
Confidence 334567778899999999985 3456666544
No 220
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=53.12 E-value=2.2e+02 Score=29.37 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=53.2
Q ss_pred CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChH--HHHHHHhhcCCCCEEEecCCCcchHHHH
Q 016179 239 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE--NYITGLIQKWPVPSILVPGGSSNLKYDA 316 (394)
Q Consensus 239 ~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~--~~l~~~~~~~~~~v~~~~g~~~~~~~~~ 316 (394)
|..+||..|-|-- ++. .+++| .++ .++++++++=.. ++++ ..++. +.+.|.++.++. .+...-+
T Consensus 359 dgdviltyg~s~v--V~~---ill~A-~~~---~k~frVvVVDSR-P~~EG~~~lr~-Lv~~GinctYv~---I~a~syi 424 (556)
T KOG1467|consen 359 DGDVLLTYGSSSV--VNM---ILLEA-KEL---GKKFRVVVVDSR-PNLEGRKLLRR-LVDRGINCTYVL---INAASYI 424 (556)
T ss_pred cCCEEEEecchHH--HHH---HHHHH-HHh---CcceEEEEEeCC-CCcchHHHHHH-HHHcCCCeEEEE---ehhHHHH
Confidence 4456777654332 333 35554 333 357887776553 3333 22333 333466665543 2345556
Q ss_pred HHHcccce-------------ehhhHHHH--HHHHcCCCEEEEEcCChH
Q 016179 317 FSASRVAL-------------CTSGTVAV--ELQLARLPCVVAYRAHFL 350 (394)
Q Consensus 317 ~~~ADl~I-------------~~SGt~tl--Ea~a~G~P~Iv~y~~~~~ 350 (394)
|..++-++ +|.||+.+ =|=+.++|+|++...--+
T Consensus 425 m~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF 473 (556)
T KOG1467|consen 425 MLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKF 473 (556)
T ss_pred HHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhh
Confidence 66665443 35587664 556779999998554333
No 221
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=52.29 E-value=62 Score=31.01 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.5
Q ss_pred HHHHHHhcCCCEEEEeCC
Q 016179 108 TIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~~ 125 (394)
+.+.+++++||++++.||
T Consensus 157 ~~~~l~~~~~Dlivlagy 174 (286)
T PRK06027 157 LLELIDEYQPDLVVLARY 174 (286)
T ss_pred HHHHHHHhCCCEEEEecc
Confidence 567788999999999886
No 222
>PLN02670 transferase, transferring glycosyl groups
Probab=52.27 E-value=77 Score=32.74 Aligned_cols=44 Identities=16% Similarity=-0.035 Sum_probs=29.6
Q ss_pred HHHHHHccc--ceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhh
Q 016179 314 YDAFSASRV--ALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYK 358 (394)
Q Consensus 314 ~~~~~~ADl--~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~ 358 (394)
.++++..++ +||=.|-.+. |++.+|+|+|. .+...--+.-++++
T Consensus 350 ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~-~P~~~DQ~~Na~~v 396 (472)
T PLN02670 350 VKILSHESVGGFLTHCGWNSVVEGLGFGRVLIL-FPVLNEQGLNTRLL 396 (472)
T ss_pred HHHhcCcccceeeecCCcchHHHHHHcCCCEEe-CcchhccHHHHHHH
Confidence 467876666 8999997554 99999999986 44433222234444
No 223
>PLN02210 UDP-glucosyl transferase
Probab=50.78 E-value=1.9e+02 Score=29.60 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=25.3
Q ss_pred CCceEEEEeCCchHHHH-HHHHHHHH--HhcCCCCeEEEE
Q 016179 30 GELRVFIVAGEVSGDSI-GSRLMSAM--KKLAPLPVSFSG 66 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~-a~~l~~~L--~~~~~~~~~~~g 66 (394)
++.+|++.---.-||+. ...+++.| ..++-. ++++-
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~-VT~v~ 45 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLH-FTLAT 45 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcE-EEEEe
Confidence 34578888888889999 88999995 355432 44443
No 224
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=50.33 E-value=32 Score=33.78 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCchH
Q 016179 104 RLKETIEAALLFRPHAVVTVDSKGFSF 130 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~~~~f~~ 130 (394)
...++...+++.+||+||+ .|.||.
T Consensus 68 a~~~i~~mv~~~~pD~via--GPaFna 92 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIA--GPAFNA 92 (349)
T ss_pred HHHHHHHHHHhcCCCEEEE--cCCcCC
Confidence 3456778889999999997 466763
No 225
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=50.31 E-value=98 Score=27.67 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCEEEEeCC
Q 016179 107 ETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 107 ~~~~~i~~~~PD~Vi~~~~ 125 (394)
++.+.+++.+||++++.+|
T Consensus 70 ~~~~~l~~~~~D~iv~~~~ 88 (190)
T TIGR00639 70 AIIEELRAHEVDLVVLAGF 88 (190)
T ss_pred HHHHHHHhcCCCEEEEeCc
Confidence 3567788999999999886
No 226
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=49.22 E-value=76 Score=30.48 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=41.4
Q ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecCh--hh----HhccCccc-cccCcceeccHHHhhhhHHHHH
Q 016179 30 GELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGS--MM----SEQGMKSL-FPMEDIAVMGIWELLPHIYKFR 102 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~--~m----~~~g~~~~-~~~~~l~~~G~~~~l~~~~~~~ 102 (394)
.++||.|.+.|. ||.. .+|++..+...-+ +++..+-++ .. ++.|++.. ++... +...
T Consensus 92 ~~~kiavl~Sg~-g~nl-~al~~~~~~~~l~-~~i~~visn~~~~~~~A~~~gIp~~~~~~~~-------~~~~------ 155 (289)
T PRK13010 92 QRPKVVIMVSKF-DHCL-NDLLYRWRMGELD-MDIVGIISNHPDLQPLAVQHDIPFHHLPVTP-------DTKA------ 155 (289)
T ss_pred CCeEEEEEEeCC-CccH-HHHHHHHHCCCCC-cEEEEEEECChhHHHHHHHcCCCEEEeCCCc-------cccc------
Confidence 567886655444 4444 4566666654322 565544432 22 34455432 11111 0000
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCC
Q 016179 103 VRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 103 ~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
..-.++.+.+++++||++++.||
T Consensus 156 ~~~~~~~~~l~~~~~Dlivlagy 178 (289)
T PRK13010 156 QQEAQILDLIETSGAELVVLARY 178 (289)
T ss_pred chHHHHHHHHHHhCCCEEEEehh
Confidence 00123567788999999999886
No 227
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=48.69 E-value=31 Score=30.77 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=28.9
Q ss_pred CceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEe
Q 016179 31 ELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGV 67 (394)
Q Consensus 31 ~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~ 67 (394)
+|||++.-.|.||-+||.++.+.|++.+.+ ++++-.
T Consensus 2 ~~riivgisGASG~iygvrlLe~L~~~~~e-~hlviS 37 (191)
T COG0163 2 MKRIIVGISGASGAIYGVRLLEVLRELGVE-THLVIS 37 (191)
T ss_pred CcEEEEEEeccccHHHHHHHHHHHHhcCce-EEEEEc
Confidence 568888888899999999999999987653 665543
No 228
>PLN02413 choline-phosphate cytidylyltransferase
Probab=48.46 E-value=1.3e+02 Score=28.92 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEecChh
Q 016179 41 VSGDSIGSRLMSAMKKLAPLPVSFSGVGGSM 71 (394)
Q Consensus 41 ~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~ 71 (394)
+.||+..+.-| ++.+|++.-++|+-++.
T Consensus 40 H~GHir~L~qA---K~lg~~d~LIVGV~sDe 67 (294)
T PLN02413 40 HFGHARSLEQA---KKLFPNTYLLVGCCNDE 67 (294)
T ss_pred CHHHHHHHHHH---HHhCCCCEEEEEecccH
Confidence 88999855544 44455436688887654
No 229
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=47.80 E-value=2.5e+02 Score=26.66 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=55.8
Q ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHH
Q 016179 30 GELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETI 109 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~ 109 (394)
..++|.+.=.|-|| ..+.++++++-|+ .+++.+|.. +.++.. .-+ .+. +.....++.
T Consensus 4 ~~~~IgvFDSGVGG----LsVlrei~~~LP~-e~~iY~~D~----a~~PYG----~ks----~e~------I~~~~~~i~ 60 (269)
T COG0796 4 PQPPIGVFDSGVGG----LSVLREIRRQLPD-EDIIYVGDT----ARFPYG----EKS----EEE------IRERTLEIV 60 (269)
T ss_pred cCCeEEEEECCCCc----HHHHHHHHHHCCC-CcEEEEecC----CCCCCC----CCC----HHH------HHHHHHHHH
Confidence 45678887777666 4567777777786 788888742 222221 110 022 223344455
Q ss_pred HHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCcc
Q 016179 110 EAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPSF 158 (394)
Q Consensus 110 ~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~~ 158 (394)
+.+.+..++++|.- +-..+......|++++ .+|+ +.-+ |.+
T Consensus 61 ~~l~~~~ik~lVIA-CNTASa~al~~LR~~~-----~iPV-vGvi-Pai 101 (269)
T COG0796 61 DFLLERGIKALVIA-CNTASAVALEDLREKF-----DIPV-VGVI-PAI 101 (269)
T ss_pred HHHHHcCCCEEEEe-cchHHHHHHHHHHHhC-----CCCE-EEec-cch
Confidence 66666669977643 2123444455677664 6895 5543 664
No 230
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=47.61 E-value=1.8e+02 Score=27.46 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=33.9
Q ss_pred hhcCCCCEEEecCCCcchHHHHHHHccccee-------------hhhHHHH--HHHHcCCCEEEEE
Q 016179 295 IQKWPVPSILVPGGSSNLKYDAFSASRVALC-------------TSGTVAV--ELQLARLPCVVAY 345 (394)
Q Consensus 295 ~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~-------------~SGt~tl--Ea~a~G~P~Iv~y 345 (394)
+.+.+.++.++.. ..+..+|...|.++. +.||..+ =|-.+++|++++.
T Consensus 130 L~~~GI~vtli~D---sa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~ 192 (253)
T PRK06372 130 LVKSGIDVVLLTD---ASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLT 192 (253)
T ss_pred HHHCCCCEEEEeh---hHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEe
Confidence 4456778887753 356777888887765 4477665 6677899999763
No 231
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=47.49 E-value=70 Score=28.85 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCEEEEeCC
Q 016179 107 ETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 107 ~~~~~i~~~~PD~Vi~~~~ 125 (394)
++.+.+++++||++++.+|
T Consensus 71 ~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 71 ALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred HHHHHHHHhCcCEEEhHHh
Confidence 3457788899999998875
No 232
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=47.42 E-value=1e+02 Score=31.85 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=31.3
Q ss_pred HHHHHHccc--ceehhhHHHH-HHHHcCCCEEEEEcCChHHHHHHHhh
Q 016179 314 YDAFSASRV--ALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYK 358 (394)
Q Consensus 314 ~~~~~~ADl--~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~ 358 (394)
.++++...+ +|+=.|-.+. |++.+|+|+|. .+.-.--+.-++++
T Consensus 349 ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~-~P~~~DQ~~na~~~ 395 (481)
T PLN02992 349 AEILAHQAVGGFLTHCGWSSTLESVVGGVPMIA-WPLFAEQNMNAALL 395 (481)
T ss_pred HHHhCCcccCeeEecCchhHHHHHHHcCCCEEe-cCccchhHHHHHHH
Confidence 467887775 8999997665 99999999986 45444333345544
No 233
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=47.30 E-value=1.5e+02 Score=25.94 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=27.3
Q ss_pred ceEEEEeCCchHHHH--HHHHHHHHHhcCCCCeEEEEe
Q 016179 32 LRVFIVAGEVSGDSI--GSRLMSAMKKLAPLPVSFSGV 67 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~--a~~l~~~L~~~~~~~~~~~g~ 67 (394)
||+||+-++.-|... |..++.+|++.+.+ +++.-.
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~q-vdi~dl 37 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQ-VDIQDL 37 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCe-eeeeeh
Confidence 789999888778655 88899999987665 766554
No 234
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=46.67 E-value=95 Score=31.57 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=28.1
Q ss_pred hHHHHHHHcccceehhhHH------------HHHHHHcCCCEEEEE-cCChHHH
Q 016179 312 LKYDAFSASRVALCTSGTV------------AVELQLARLPCVVAY-RAHFLTE 352 (394)
Q Consensus 312 ~~~~~~~~ADl~I~~SGt~------------tlEa~a~G~P~Iv~y-~~~~~~~ 352 (394)
++...++.||++|.-.|.. .+-|..+|+|+++.- -.+|++.
T Consensus 110 ~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf~~ 163 (426)
T PRK10017 110 DFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPFQD 163 (426)
T ss_pred HHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCcCC
Confidence 5566899999999988742 225677899988642 2344433
No 235
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=45.76 E-value=84 Score=26.97 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=22.0
Q ss_pred ceEEEEeCC---chHHHHHHHHHHHHHhcCCCCeEEEEecChh
Q 016179 32 LRVFIVAGE---VSGDSIGSRLMSAMKKLAPLPVSFSGVGGSM 71 (394)
Q Consensus 32 ~kIlI~aG~---~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~ 71 (394)
+||++.+.- +.||+..+. ..++.+|++.-++|+.++.
T Consensus 3 ~rV~~~G~FDl~H~GHi~~L~---~A~~lg~~d~LiVgV~sD~ 42 (150)
T cd02174 3 VRVYVDGCFDLFHYGHANALR---QAKKLGPNDYLIVGVHSDE 42 (150)
T ss_pred eEEEEeCccCCCCHHHHHHHH---HHHHhCCCCEEEEEEecCH
Confidence 455544433 899998444 4445554335678887754
No 236
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=45.76 E-value=50 Score=29.77 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCCEEEEeCC
Q 016179 107 ETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 107 ~~~~~i~~~~PD~Vi~~~~ 125 (394)
.+.+.+++.+||+|++-||
T Consensus 70 ~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 70 ALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred HHHHHHHhcCCCEEEEcch
Confidence 3567888999999999775
No 237
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.60 E-value=1.5e+02 Score=28.62 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=66.3
Q ss_pred hHHHHhhcCCCCCC-cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhc--------
Q 016179 227 SEDFKNKYSVPSGA-TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQK-------- 297 (394)
Q Consensus 227 ~~~~r~~lgl~~~~-~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~-------- 297 (394)
.+.+++++|+++.- +.+.+++ .. +..+|..+ +++++...++-++++.|.. ..+ +.+....
T Consensus 164 ~~~l~~rlgv~ek~~~~~slFa--Y~---npa~~s~i---eq~r~a~~p~llL~~e~~~--~~~-~~~~~~~~~~a~Gdv 232 (370)
T COG4394 164 AEYLLERLGVNEKYDLIASLFA--YE---NPALPSWI---EQLRKADKPILLLIPEGKT--QAN-FAKYFDNNNNADGDV 232 (370)
T ss_pred HHHHHHHcCCchhhchhhhhhc--cC---CcchHHHH---HHHHhcCCCEEEEcccchH--HHH-HHHHcCCCcccccch
Confidence 45778899998643 3344442 11 22355554 4454444456666665531 222 2222211
Q ss_pred ---CCCCEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEE-EEEcCC
Q 016179 298 ---WPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCV-VAYRAH 348 (394)
Q Consensus 298 ---~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~I-v~y~~~ 348 (394)
-.+++..+++...++..+++..||+-+.|---+-+-|..+|+|.+ =+|+-+
T Consensus 233 ~~~~~lrvvklPFvpqddyd~LL~lcD~n~VRGEDSFVRAq~agkPflWHIYpQd 287 (370)
T COG4394 233 FQTAKLRVVKLPFVPQDDYDELLWLCDFNLVRGEDSFVRAQLAGKPFLWHIYPQD 287 (370)
T ss_pred hcccceEEEEecCCcHhHHHHHHHhcccceeecchHHHHHHHcCCCcEEEecCCc
Confidence 012344455443577889999999999998778889999999988 347754
No 238
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=44.93 E-value=1.8e+02 Score=29.58 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=15.4
Q ss_pred CceEEEEeCCchHHHHHHHH
Q 016179 31 ELRVFIVAGEVSGDSIGSRL 50 (394)
Q Consensus 31 ~~kIlI~aG~~sGh~~a~~l 50 (394)
.||||++++|...|..+.++
T Consensus 2 ~~kVLvlG~G~re~al~~~l 21 (435)
T PRK06395 2 TMKVMLVGSGGREDAIARAI 21 (435)
T ss_pred ceEEEEECCcHHHHHHHHHH
Confidence 58999999888888764444
No 239
>PLN02342 ornithine carbamoyltransferase
Probab=44.16 E-value=2.4e+02 Score=27.87 Aligned_cols=125 Identities=9% Similarity=0.036 Sum_probs=62.7
Q ss_pred HHHHHhhhheeecCcccHH--HHHhc-CCCeEE----EcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCc
Q 016179 169 KNLAAFVDHILCILPNEEA--ICRLN-GLAATF----VGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGAT 241 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~~--~~~~~-g~~~~~----vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~ 241 (394)
+.+++++|.+.+-.+.... .+.++ ++|+.- ..||--- + .|--.+++++|- -+..
T Consensus 135 rvLs~y~D~IviR~~~~~~~~~la~~~~vPVINA~~~~~HPtQa-L-----------------aDl~Ti~e~~G~-l~gl 195 (348)
T PLN02342 135 RVLSRYNDIIMARVFAHQDVLDLAEYSSVPVINGLTDYNHPCQI-M-----------------ADALTIIEHIGR-LEGT 195 (348)
T ss_pred HHHHHhCCEEEEeCCChHHHHHHHHhCCCCEEECCCCCCChHHH-H-----------------HHHHHHHHHhCC-cCCC
Confidence 4479999999987765432 33332 344321 1244200 0 111234455552 2345
Q ss_pred EEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC-CEEEecCCCcchHHHHHHHc
Q 016179 242 VISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGSSNLKYDAFSAS 320 (394)
Q Consensus 242 ~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~-~v~~~~g~~~~~~~~~~~~A 320 (394)
+|+++|-.. +....++.++..+ ++.+.+++.+.....+.+-+..++++. .+.+. +|+.+++..|
T Consensus 196 kva~vGD~~-----nva~Sli~~~~~~-----G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~-----~d~~eav~~a 260 (348)
T PLN02342 196 KVVYVGDGN-----NIVHSWLLLAAVL-----PFHFVCACPKGYEPDAKTVEKARAAGISKIEIT-----NDPAEAVKGA 260 (348)
T ss_pred EEEEECCCc-----hhHHHHHHHHHHc-----CCEEEEECCcccccCHHHHHHHHHhCCCcEEEE-----cCHHHHhCCC
Confidence 788876532 2233444454443 466555554322211212222333332 34433 5788999999
Q ss_pred ccceehh
Q 016179 321 RVALCTS 327 (394)
Q Consensus 321 Dl~I~~S 327 (394)
|++.+..
T Consensus 261 DVvy~~~ 267 (348)
T PLN02342 261 DVVYTDV 267 (348)
T ss_pred CEEEECC
Confidence 9999975
No 240
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=43.97 E-value=2.1e+02 Score=27.60 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCe
Q 016179 106 KETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPA 149 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~ 149 (394)
.++.+.+++.++|+||++|. +...-+++.+...+. .++|+
T Consensus 68 ~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK~ia~~~~---~~~p~ 107 (332)
T cd07766 68 KEAVERARAAEVDAVIAVGG-GSTLDTAKAVAALLN---RGLPI 107 (332)
T ss_pred HHHHHHHHhcCcCEEEEeCC-chHHHHHHHHHHHhc---CCCCE
Confidence 34556666789999999985 356666665543321 15784
No 241
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=43.83 E-value=1.7e+02 Score=28.59 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=17.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeE
Q 016179 116 RPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAH 150 (394)
Q Consensus 116 ~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~ 150 (394)
.||+||.+|- .-.........+. +||++
T Consensus 152 ~Pd~viv~d~-~~e~~AI~EA~kl------~IPvI 179 (326)
T PRK12311 152 LPDLLFVIDT-NKEDIAIQEAQRL------GIPVA 179 (326)
T ss_pred CCCEEEEeCC-ccchHHHHHHHHc------CCCEE
Confidence 6999999973 2344444444444 89963
No 242
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=43.68 E-value=1.6e+02 Score=31.14 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=48.9
Q ss_pred CCceEEEEe-CC-chH-HHHHHHHHHHHHhcCCCCeEEEEec-C-hhh-HhccCccc-cccCcce-eccHHHhhhhHH--
Q 016179 30 GELRVFIVA-GE-VSG-DSIGSRLMSAMKKLAPLPVSFSGVG-G-SMM-SEQGMKSL-FPMEDIA-VMGIWELLPHIY-- 99 (394)
Q Consensus 30 ~~~kIlI~a-G~-~sG-h~~a~~l~~~L~~~~~~~~~~~g~g-g-~~m-~~~g~~~~-~~~~~l~-~~G~~~~l~~~~-- 99 (394)
..+||.|++ || +.| |.-...+.+.+++.+++ .+++|+- | ..+ +..-++.- -....+. ..|. +.+..-+
T Consensus 71 ~~~~IgIl~SGG~aPGiNnvI~gv~~~~~~~~~~-~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGs-d~LGs~R~k 148 (550)
T cd00765 71 PKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKG-STLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGF-DMICSGRTK 148 (550)
T ss_pred CCCEEEEECCCCCcHhHHHHHHHHHHHHHHhcCC-cEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCCh-hhhcCcCCC
Confidence 347886543 33 445 76667788888877665 6777654 2 222 21111100 0000010 1122 1111000
Q ss_pred -HHHHHHHHHHHHHHhcCCCEEEEeCC
Q 016179 100 -KFRVRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 100 -~~~~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
.--..++++.+.+++.+.|.+|.+|.
T Consensus 149 ~~~~e~~~~i~~~l~~~~Id~LviIGG 175 (550)
T cd00765 149 IETEDQFKQAEETAKKLDLDALVVIGG 175 (550)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11234677889999999999999975
No 243
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=43.67 E-value=1.9e+02 Score=29.04 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=29.1
Q ss_pred EecCCCcchHHHHHHH--cccceehhhH-----HHHHHHHcCCCEEEEEcCCh
Q 016179 304 LVPGGSSNLKYDAFSA--SRVALCTSGT-----VAVELQLARLPCVVAYRAHF 349 (394)
Q Consensus 304 ~~~g~~~~~~~~~~~~--ADl~I~~SGt-----~tlEa~a~G~P~Iv~y~~~~ 349 (394)
++.| .+.+.++.+. +|++|...++ .|++|.-.|+++.+..|-.-
T Consensus 76 v~~G--~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEsl 126 (385)
T PRK05447 76 VLAG--EEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESL 126 (385)
T ss_pred EEEC--hhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHH
Confidence 4445 3456666554 5887776643 46799999999887666443
No 244
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=43.57 E-value=25 Score=29.50 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=24.4
Q ss_pred HHHHHcccceehhhH------HH---HHHHHcCCCEEEEEcC---ChHHHHHHH
Q 016179 315 DAFSASRVALCTSGT------VA---VELQLARLPCVVAYRA---HFLTEWFIR 356 (394)
Q Consensus 315 ~~~~~ADl~I~~SGt------~t---lEa~a~G~P~Iv~y~~---~~~~~~~a~ 356 (394)
.++..||++|.+=|- +. -=|+++|+|.|++.+- +++...=++
T Consensus 68 ~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~ 121 (141)
T PF11071_consen 68 TLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAA 121 (141)
T ss_pred HHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHh
Confidence 355666666666651 11 1478999999987442 344443344
No 245
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.24 E-value=1.1e+02 Score=24.03 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=19.1
Q ss_pred hHHHHHHHcccceehhhHH----HH--HHHHcCCCEEEEE
Q 016179 312 LKYDAFSASRVALCTSGTV----AV--ELQLARLPCVVAY 345 (394)
Q Consensus 312 ~~~~~~~~ADl~I~~SGt~----tl--Ea~a~G~P~Iv~y 345 (394)
+..+....+|++++.+-.. .+ .+.-.|+|++++.
T Consensus 43 ~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 43 AAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeC
Confidence 3444445567777766432 23 2334578988764
No 246
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=43.14 E-value=1.1e+02 Score=29.86 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=45.7
Q ss_pred EEeCCchHHHH-HHHHHHH-HHhcCCCCeEEEEecChhhHhccCccccccCcceecc----HHHhhhhHHHHHHHHHHHH
Q 016179 36 IVAGEVSGDSI-GSRLMSA-MKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMG----IWELLPHIYKFRVRLKETI 109 (394)
Q Consensus 36 I~aG~~sGh~~-a~~l~~~-L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G----~~~~l~~~~~~~~~~~~~~ 109 (394)
|.+.|+|||-| +..+++. +++.++ +.++.. +.+.+..+-. ....+| ..|.++.-....+.+..+.
T Consensus 19 iLGtGGGGdpyig~lm~~~~~~~~~~--i~vl~~--d~i~e~~~v~-----~v~mmGAP~v~iEk~p~g~e~~ra~e~~~ 89 (357)
T COG3535 19 ILGTGGGGDPYIGKLMALRAMKEGGP--IKVLDV--DEIAEDDFVA-----TVGMMGAPIVGIEKLPNGDEAIRAFEVLE 89 (357)
T ss_pred eeccCCCCCchHHHHHHHHHHHhcCC--eEEeeh--hhcCccceEE-----EecccCCchhheeeCCCcHHHHHHHHHHH
Confidence 66777788888 7666664 454433 666654 4444322211 122222 1266666666777777776
Q ss_pred HHHHhcCCCEEEEeC
Q 016179 110 EAALLFRPHAVVTVD 124 (394)
Q Consensus 110 ~~i~~~~PD~Vi~~~ 124 (394)
+.+ ..+.|.+++.-
T Consensus 90 ~~~-~k~v~ai~s~E 103 (357)
T COG3535 90 DYL-GKPVDAIISIE 103 (357)
T ss_pred HHh-CCceeEEEEee
Confidence 665 34679999883
No 247
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=43.09 E-value=1.7e+02 Score=27.94 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=22.1
Q ss_pred CceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEec
Q 016179 31 ELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVG 68 (394)
Q Consensus 31 ~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~g 68 (394)
+|||||+++++. + .+++.|++...+ +++++..
T Consensus 1 ~~~vLv~g~~~~-~----~~~~~l~~~~~g-~~vi~~d 32 (326)
T PRK12767 1 MMNILVTSAGRR-V----QLVKALKKSLLK-GRVIGAD 32 (326)
T ss_pred CceEEEecCCcc-H----HHHHHHHHhccC-CEEEEEC
Confidence 478988888654 3 677888876543 6777664
No 248
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=43.00 E-value=93 Score=29.73 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=41.9
Q ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecCh--hh----HhccCcccc-ccCcceeccHHHhhhhHHHHH
Q 016179 30 GELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGS--MM----SEQGMKSLF-PMEDIAVMGIWELLPHIYKFR 102 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~--~m----~~~g~~~~~-~~~~l~~~G~~~~l~~~~~~~ 102 (394)
.++||.|.+.+. ||.. .+|++..+...-+ +++..+-+. .. ++.|++... +... . . + .
T Consensus 83 ~~~ki~vl~Sg~-g~nl-~~l~~~~~~g~l~-~~i~~visn~~~~~~~A~~~gIp~~~~~~~~-----~-~------~-~ 146 (280)
T TIGR00655 83 KLKRVAILVSKE-DHCL-GDLLWRWYSGELD-AEIALVISNHEDLRSLVERFGIPFHYIPATK-----D-N------R-V 146 (280)
T ss_pred CCcEEEEEEcCC-ChhH-HHHHHHHHcCCCC-cEEEEEEEcChhHHHHHHHhCCCEEEcCCCC-----c-c------h-h
Confidence 457887665554 5554 4566666654322 565544332 22 344554421 1100 0 0 0 0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCC
Q 016179 103 VRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 103 ~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
..-.++.+.+++++||++++.+|
T Consensus 147 ~~e~~~~~~l~~~~~Dlivlagy 169 (280)
T TIGR00655 147 EHEKRQLELLKQYQVDLVVLAKY 169 (280)
T ss_pred hhHHHHHHHHHHhCCCEEEEeCc
Confidence 01123567788999999999876
No 249
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=42.95 E-value=95 Score=26.34 Aligned_cols=18 Identities=11% Similarity=0.003 Sum_probs=10.8
Q ss_pred hHHHHHHHcccceehhhH
Q 016179 312 LKYDAFSASRVALCTSGT 329 (394)
Q Consensus 312 ~~~~~~~~ADl~I~~SGt 329 (394)
+..+..+.||++|+..|.
T Consensus 64 ~l~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 64 QLQSKVHDADVVVVGSPK 81 (140)
T ss_pred CHHHHHhhCCEEEEecCC
Confidence 445566666666666654
No 250
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=42.55 E-value=73 Score=30.50 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=13.1
Q ss_pred HHHHHHhcCCCEEEEeC
Q 016179 108 TIEAALLFRPHAVVTVD 124 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~ 124 (394)
+.+.+++.+||+||.+-
T Consensus 42 v~~~i~~~~PDvVIn~A 58 (281)
T COG1091 42 VLEVIRETRPDVVINAA 58 (281)
T ss_pred HHHHHHhhCCCEEEECc
Confidence 35677788999999763
No 251
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=42.46 E-value=82 Score=31.20 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=22.4
Q ss_pred chHHHHHHHcccceehhhH---H-HH-HHHHcCCCEE
Q 016179 311 NLKYDAFSASRVALCTSGT---V-AV-ELQLARLPCV 342 (394)
Q Consensus 311 ~~~~~~~~~ADl~I~~SGt---~-tl-Ea~a~G~P~I 342 (394)
+++.++++.+|++|..+|. . .+ -|...|++.|
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yv 95 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYV 95 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEE
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCee
Confidence 3478899999999998863 2 23 6777799866
No 252
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=42.01 E-value=80 Score=32.61 Aligned_cols=105 Identities=23% Similarity=0.276 Sum_probs=49.7
Q ss_pred CcHHHHHhhHHHHHHHHHHhhhhCCC----eEEEEEeCCCcC-------hHHHHHHHhhc----CC----CCEEEecC-C
Q 016179 249 SRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPNRH-------VENYITGLIQK----WP----VPSILVPG-G 308 (394)
Q Consensus 249 Srg~ei~~~l~~ll~a~~~l~~~~~~----~~~vi~~g~~~~-------~~~~l~~~~~~----~~----~~v~~~~g-~ 308 (394)
.|-...+. ++.=++|++.+.+++|+ +.++-++.++.. +.+.+++...+ ++ .++.++.. .
T Consensus 283 Drld~~kG-i~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~ 361 (474)
T PF00982_consen 283 DRLDYTKG-IPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSL 361 (474)
T ss_dssp --B-GGG--HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S--
T ss_pred ccchhhcC-HHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCC
Confidence 45443444 55566788888877775 445544433211 11222222211 11 14665543 1
Q ss_pred CcchHHHHHHHcccceehh---hH--HHHHHHHcCCC--EEEE-EcCChHHHHH
Q 016179 309 SSNLKYDAFSASRVALCTS---GT--VAVELQLARLP--CVVA-YRAHFLTEWF 354 (394)
Q Consensus 309 ~~~~~~~~~~~ADl~I~~S---Gt--~tlEa~a~G~P--~Iv~-y~~~~~~~~~ 354 (394)
..++..++|+.||+++..| |- ++.|..+|..+ .+++ ....+....+
T Consensus 362 ~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L 415 (474)
T PF00982_consen 362 SFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQL 415 (474)
T ss_dssp -HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-
T ss_pred CHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHc
Confidence 1467889999999999998 54 44599999876 4443 5555444333
No 253
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=41.61 E-value=3.3e+02 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=19.6
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcC
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLA 58 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~ 58 (394)
+|++|+++...-..++..+.+.|++.+
T Consensus 25 ~kvlivtd~~~~~~~~~~i~~~L~~~~ 51 (332)
T cd08549 25 SKIMIVCGNNTYKVAGKEIIERLESNN 51 (332)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHcC
Confidence 578899988777777666777776543
No 254
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=41.30 E-value=1.5e+02 Score=31.62 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=49.1
Q ss_pred ceEEE-EeCC--chHHHHHHHHHHHHHhcCCCCeEEEEec-C-hhh-HhccCccc-cccCcc-eeccH--HHhhh-hHHH
Q 016179 32 LRVFI-VAGE--VSGDSIGSRLMSAMKKLAPLPVSFSGVG-G-SMM-SEQGMKSL-FPMEDI-AVMGI--WELLP-HIYK 100 (394)
Q Consensus 32 ~kIlI-~aG~--~sGh~~a~~l~~~L~~~~~~~~~~~g~g-g-~~m-~~~g~~~~-~~~~~l-~~~G~--~~~l~-~~~~ 100 (394)
+||-| .+|| .|+|..-..+.+.+++.+++ .+++|+- | ..+ +...++.- -....+ ...|+ ...-+ .+ .
T Consensus 80 ~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~-~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l-~ 157 (610)
T PLN03028 80 VRVGVVFCGRQSPGGHNVIWGLHDALKAHNPN-SVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQI-R 157 (610)
T ss_pred cEEEEEccCCCCccHHHHHHHHHHHHHHhCCC-cEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCc-C
Confidence 67754 3444 45687766788888887765 7787764 3 222 22111100 000000 11222 11000 01 0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC
Q 016179 101 FRVRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 101 ~~~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
-...++++.+.+++.+.|.+|.+|.
T Consensus 158 ~~e~~~~i~e~l~~l~Id~LvvIGG 182 (610)
T PLN03028 158 TTEQVNAALAACEALKLDGLVIIGG 182 (610)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1235678899999999999999975
No 255
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=40.78 E-value=1.3e+02 Score=24.20 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=22.6
Q ss_pred eEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 016179 33 RVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGG 69 (394)
Q Consensus 33 kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg 69 (394)
||++.+.++-.|..+..++..+.+.. + .+++..|.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~-G-~~V~~lg~ 35 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA-G-FEVIDLGV 35 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC-C-CEEEECCC
Confidence 46777777778888887666544432 2 56666653
No 256
>PRK00865 glutamate racemase; Provisional
Probab=40.77 E-value=3.1e+02 Score=25.66 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=52.8
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEA 111 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~ 111 (394)
+.|.|.=.|-|| ..+.++++++.|+ .+++.+|.. +.++.. .- .-.+ +.....++.+.
T Consensus 6 ~~IgvfDSGiGG----Ltvl~~i~~~lp~-~~~iY~~D~----~~~PYG----~k---s~~~-------i~~~~~~~~~~ 62 (261)
T PRK00865 6 APIGVFDSGVGG----LTVLREIRRLLPD-EHIIYVGDT----ARFPYG----EK---SEEE-------IRERTLEIVEF 62 (261)
T ss_pred CeEEEEECCccH----HHHHHHHHHHCCC-CCEEEEecC----CCCCCC----CC---CHHH-------HHHHHHHHHHH
Confidence 457766666555 5677888888886 778888732 112211 10 0112 33444556677
Q ss_pred HHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCc
Q 016179 112 ALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPS 157 (394)
Q Consensus 112 i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~ 157 (394)
+.+.++|+++.--+ ..+......+++.. ++|+ ++ +.+.
T Consensus 63 L~~~g~d~iVIaCN-Ta~~~~l~~lr~~~-----~iPv-ig-i~~a 100 (261)
T PRK00865 63 LLEYGVKMLVIACN-TASAVALPDLRERY-----DIPV-VG-IVPA 100 (261)
T ss_pred HHhCCCCEEEEeCc-hHHHHHHHHHHHhC-----CCCE-Ee-eHHH
Confidence 77789998875321 11222335566543 6894 67 5554
No 257
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=39.88 E-value=3.3e+02 Score=26.59 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=18.7
Q ss_pred HHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 109 IEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 109 ~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
.+.+++ ++|+||++|. +...-.++.+.
T Consensus 74 ~~~~~~-~~d~IIaIGG-Gs~~D~aK~vA 100 (348)
T cd08175 74 LKELER-DTDLIIAVGS-GTINDITKYVS 100 (348)
T ss_pred HHHhhc-cCCEEEEECC-cHHHHHHHHHH
Confidence 344445 8999999985 45677776654
No 258
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=39.50 E-value=3e+02 Score=26.55 Aligned_cols=125 Identities=9% Similarity=0.021 Sum_probs=63.7
Q ss_pred HHHHHhhhheeecCcccH--HHHHh-cCCCeEEE----cCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCc
Q 016179 169 KNLAAFVDHILCILPNEE--AICRL-NGLAATFV----GHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGAT 241 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~--~~~~~-~g~~~~~v----G~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~ 241 (394)
+.++.++|.+.+-.+... +.+.+ .++|+.-- .||--- + .|--.+++++|- -+..
T Consensus 93 ~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQa-L-----------------~Dl~Ti~e~~g~-l~gl 153 (304)
T PRK00779 93 RVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQI-L-----------------ADLLTIYEHRGS-LKGL 153 (304)
T ss_pred HHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChHHH-H-----------------HHHHHHHHHhCC-cCCc
Confidence 447889999888877643 23333 23443322 344210 0 011234455552 2345
Q ss_pred EEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcCh-HHHHHHHhhcCCCCEEEecCCCcchHHHHHHHc
Q 016179 242 VISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV-ENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 320 (394)
Q Consensus 242 ~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~-~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~A 320 (394)
+|+++|. .. +....++.++..+ ++.+.+++.+.... .+.++...++.+..+.+. +++.+++..|
T Consensus 154 ~i~~vGd-~~----~v~~Sl~~~l~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~-----~d~~~a~~~a 218 (304)
T PRK00779 154 KVAWVGD-GN----NVANSLLLAAALL-----GFDLRVATPKGYEPDPEIVEKIAKETGASIEVT-----HDPKEAVKGA 218 (304)
T ss_pred EEEEEeC-CC----ccHHHHHHHHHHc-----CCEEEEECCcccCCCHHHHHHHHHHcCCeEEEE-----cCHHHHhCCC
Confidence 6888876 22 1223344444433 46655555432222 122222233344445433 4789999999
Q ss_pred ccceehh
Q 016179 321 RVALCTS 327 (394)
Q Consensus 321 Dl~I~~S 327 (394)
|++.+.+
T Consensus 219 Dvvy~~~ 225 (304)
T PRK00779 219 DVVYTDV 225 (304)
T ss_pred CEEEecC
Confidence 9999974
No 259
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=39.12 E-value=1e+02 Score=26.78 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=11.8
Q ss_pred chHHHHHHHcccceehhhH
Q 016179 311 NLKYDAFSASRVALCTSGT 329 (394)
Q Consensus 311 ~~~~~~~~~ADl~I~~SGt 329 (394)
.+..+..+.||++|+..|-
T Consensus 71 ~~l~~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGK 89 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSS
T ss_pred CcccceeeeccEEeeeecc
Confidence 4556667777777776664
No 260
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=39.08 E-value=46 Score=26.72 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=23.8
Q ss_pred HHHHHHccccee-------hhhHHH-H-HHHHcCCCEEEEEc
Q 016179 314 YDAFSASRVALC-------TSGTVA-V-ELQLARLPCVVAYR 346 (394)
Q Consensus 314 ~~~~~~ADl~I~-------~SGt~t-l-Ea~a~G~P~Iv~y~ 346 (394)
.+.+..||++|+ -+||.. + =|.+.|+|+++++.
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 368999999987 245554 2 57789999987653
No 261
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=38.62 E-value=1.8e+02 Score=29.12 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
+.+..+.+++++||.||++|. +.+.-.|+...
T Consensus 75 v~~~~~~~~~~~~D~iIalGG-GS~~D~AK~i~ 106 (377)
T COG1454 75 VEAGAEVAREFGPDTIIALGG-GSVIDAAKAIA 106 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHHH
Confidence 344567788999999999975 45777776654
No 262
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=38.31 E-value=3.1e+02 Score=27.23 Aligned_cols=28 Identities=18% Similarity=0.054 Sum_probs=20.1
Q ss_pred hhcCCCCEEEecCCCcchHHHHHHHcccceehh
Q 016179 295 IQKWPVPSILVPGGSSNLKYDAFSASRVALCTS 327 (394)
Q Consensus 295 ~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S 327 (394)
.++.+..+.+. +++.+++..||++.+.+
T Consensus 226 ~~~~g~~~~~~-----~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 226 AAENGGKFNIV-----NSMDEAFKDADIVYPKS 253 (357)
T ss_pred HHHcCCeEEEE-----cCHHHHhCCCCEEEECC
Confidence 33445445443 57899999999999985
No 263
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=37.97 E-value=1e+02 Score=28.13 Aligned_cols=96 Identities=11% Similarity=0.040 Sum_probs=51.4
Q ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecCh----hhHhccCccccccCcceeccHHHhhhhHHHHHHHH
Q 016179 30 GELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGS----MMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRL 105 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~----~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~ 105 (394)
+..||++.+-++-.|-.+..++..+-+.. + .+++..|-+ .+-+.-.+.. -.+.++.-.. ......+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~-G-~~Vi~LG~~vp~e~~v~~~~~~~-----~~~V~lS~~~---~~~~~~~ 156 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNN-G-YEVIDLGVMVPIEKILEAAKEHK-----ADIIGLSGLL---VPSLDEM 156 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-C-CEEEECCCCCCHHHHHHHHHHcC-----CCEEEEccch---hccHHHH
Confidence 45689998888888988998877665543 3 677777632 1211111110 1111221110 0112234
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCchHHHHHH
Q 016179 106 KETIEAALLFRPHAVVTVDSKGFSFRLLKQ 135 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~ 135 (394)
+++.+.+++..+++-|.+|...++-..+..
T Consensus 157 ~~~i~~L~~~~~~~~i~vGG~~~~~~~~~~ 186 (213)
T cd02069 157 VEVAEEMNRRGIKIPLLIGGAATSRKHTAV 186 (213)
T ss_pred HHHHHHHHhcCCCCeEEEEChhcCHHHHhh
Confidence 556666666666777767654466655543
No 264
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=37.79 E-value=34 Score=28.72 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=19.8
Q ss_pred HHHHHcccceehhhH------HH---HHHHHcCCCEEEEEc
Q 016179 315 DAFSASRVALCTSGT------VA---VELQLARLPCVVAYR 346 (394)
Q Consensus 315 ~~~~~ADl~I~~SGt------~t---lEa~a~G~P~Iv~y~ 346 (394)
.++..||++|.+=|- ++ -=|+++|+|.|++.+
T Consensus 71 ~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~ 111 (144)
T TIGR03646 71 KLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRP 111 (144)
T ss_pred HHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecc
Confidence 345556666665551 11 147899999998744
No 265
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=37.75 E-value=3.5e+02 Score=26.56 Aligned_cols=74 Identities=3% Similarity=-0.094 Sum_probs=39.2
Q ss_pred CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcCh----HHHHHHHhhcCCCCEEEecCCCcchHH
Q 016179 239 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV----ENYITGLIQKWPVPSILVPGGSSNLKY 314 (394)
Q Consensus 239 ~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~----~~~l~~~~~~~~~~v~~~~g~~~~~~~ 314 (394)
+..+|+++|-. ++....++.++..+ ++.+.+++.+.... .+.+++.....+..+.+. +++.
T Consensus 153 ~glkv~~vGD~-----~~v~~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~d~~ 217 (338)
T PRK02255 153 EDCKVVFVGDA-----TQVCVSLMFIATKM-----GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVT-----DDVD 217 (338)
T ss_pred CCCEEEEECCC-----chHHHHHHHHHHhC-----CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEE-----cCHH
Confidence 34578888752 12233344444433 46666665442211 111222223334345443 4788
Q ss_pred HHHHHcccceehh
Q 016179 315 DAFSASRVALCTS 327 (394)
Q Consensus 315 ~~~~~ADl~I~~S 327 (394)
+++..||++.+..
T Consensus 218 eav~~aDvvy~~~ 230 (338)
T PRK02255 218 EAVKDADFVYTDV 230 (338)
T ss_pred HHhCCCCEEEEcc
Confidence 9999999999954
No 266
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=37.67 E-value=95 Score=32.06 Aligned_cols=103 Identities=21% Similarity=0.178 Sum_probs=57.5
Q ss_pred CCCcHHHHHhhHHHHHHHHHHhhhhCCC----eEEEEEeCCCcC-------hHHHHHHHhhc----CC----CCEEEecC
Q 016179 247 PGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPNRH-------VENYITGLIQK----WP----VPSILVPG 307 (394)
Q Consensus 247 gGSrg~ei~~~l~~ll~a~~~l~~~~~~----~~~vi~~g~~~~-------~~~~l~~~~~~----~~----~~v~~~~g 307 (394)
|-.|-.-.|. ++.=++|++.+.+++|+ +.++.++.++.. ++..+++.... ++ .+++++..
T Consensus 260 gVDRLDytKG-i~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~ 338 (474)
T PRK10117 260 SVERLDYSKG-LPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQ 338 (474)
T ss_pred EecccccccC-HHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecC
Confidence 4456554444 55566789998888875 445545444311 12222222211 11 13554422
Q ss_pred -CCcchHHHHHHHcccceehh---hHH--HHHHHHcCC---CEE-EEEcCChH
Q 016179 308 -GSSNLKYDAFSASRVALCTS---GTV--AVELQLARL---PCV-VAYRAHFL 350 (394)
Q Consensus 308 -~~~~~~~~~~~~ADl~I~~S---Gt~--tlEa~a~G~---P~I-v~y~~~~~ 350 (394)
...++...+|++||+++..| |-. +-|-.+|.. |.+ |.....+.
T Consensus 339 ~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGa 391 (474)
T PRK10117 339 HFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGA 391 (474)
T ss_pred CCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccch
Confidence 11466778999999999998 643 239999976 334 33555443
No 267
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=37.28 E-value=2.4e+02 Score=26.39 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=20.4
Q ss_pred Hcccceehh-hHH---H-H-HHHHcCCCEEEEEcC
Q 016179 319 ASRVALCTS-GTV---A-V-ELQLARLPCVVAYRA 347 (394)
Q Consensus 319 ~ADl~I~~S-Gt~---t-l-Ea~a~G~P~Iv~y~~ 347 (394)
.+|++||+- |.+ . + -|..+|+|+|++.+.
T Consensus 194 ~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 228 (249)
T PF02571_consen 194 GIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRP 228 (249)
T ss_pred CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 688999974 433 2 4 466789999998543
No 268
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=37.14 E-value=66 Score=32.52 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=36.7
Q ss_pred Hcccceehh--------hHHHH-HHHHcCCCEEEEEcCChHHHHHH-HhhccCCccchhhhhcCCCCccc
Q 016179 319 ASRVALCTS--------GTVAV-ELQLARLPCVVAYRAHFLTEWFI-RYKAKIPYISLPNILLDSPIIPE 378 (394)
Q Consensus 319 ~ADl~I~~S--------Gt~tl-Ea~a~G~P~Iv~y~~~~~~~~~a-~~~vk~~~~~l~Nil~~~~i~pE 378 (394)
..|.+|..| |+... |.=..|+|+|.+-..-++...++ -|++ |-++.|.=+-|...-||
T Consensus 336 gVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~~vGanRiv--~~~~i~~PlGnp~l~~~ 403 (431)
T TIGR01917 336 GVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIALTVGANRII--PAIAIPHPLGDPALDAA 403 (431)
T ss_pred CCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHHhcCCCcee--cCCCCCCCCCCCCCChh
Confidence 456777665 33334 88889999998888777776664 3555 34444444555444444
No 269
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=36.84 E-value=1.9e+02 Score=27.40 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=22.9
Q ss_pred CCceEEEEeCCchH----HHH-HHHHHHHHHhcCCCCeEEE
Q 016179 30 GELRVFIVAGEVSG----DSI-GSRLMSAMKKLAPLPVSFS 65 (394)
Q Consensus 30 ~~~kIlI~aG~~sG----h~~-a~~l~~~L~~~~~~~~~~~ 65 (394)
.++||.+++|+.|= .++ +..+.++|++.+.+ +.++
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~-v~~i 42 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYD-AHPI 42 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCE-EEEE
Confidence 34589888888543 233 67788899887553 4444
No 270
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=36.83 E-value=68 Score=32.46 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCchH--------HHHHHHHHhccccCCCCCeEE
Q 016179 104 RLKETIEAALLFRPHAVVTVDSKGFSF--------RLLKQLRARYSHERLNGPAHF 151 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~~~~f~~--------~la~~l~~~~~~~~~~ip~~~ 151 (394)
...++...+++.+||++|+ .|.||. .+++....+. +||+++
T Consensus 64 a~~~i~~mv~k~~pDv~ia--GPaFNagrYG~acg~va~aV~e~~-----~IP~vt 112 (431)
T TIGR01918 64 AVARVLEMLKDKEPDIFIA--GPAFNAGRYGVACGEICKVVQDKL-----NVPAVT 112 (431)
T ss_pred HHHHHHHHHHhcCCCEEEE--cCccCCccHHHHHHHHHHHHHHhh-----CCCeEE
No 271
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=36.82 E-value=1.8e+02 Score=30.65 Aligned_cols=94 Identities=16% Similarity=0.257 Sum_probs=48.2
Q ss_pred CCceEEEE-eCC-c-hHHHHHHHHHHHHHhcCCCCeEEEEec-C-hhh-HhccCccc-cccCcc-eeccHHHhhhhH---
Q 016179 30 GELRVFIV-AGE-V-SGDSIGSRLMSAMKKLAPLPVSFSGVG-G-SMM-SEQGMKSL-FPMEDI-AVMGIWELLPHI--- 98 (394)
Q Consensus 30 ~~~kIlI~-aG~-~-sGh~~a~~l~~~L~~~~~~~~~~~g~g-g-~~m-~~~g~~~~-~~~~~l-~~~G~~~~l~~~--- 98 (394)
..+||-|+ +|| + |+|.-...+.+.++..+++ .+++|+- | ..+ +..-++.- -....+ ...|+ +.+..-
T Consensus 66 ~~~rIgIl~sGG~aPG~N~vI~gv~~~~~~~~~~-~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~-~~LGssR~k 143 (539)
T TIGR02477 66 QPLKIGVILSGGQAPGGHNVISGLFDALKKLNPN-SKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGF-DIIGSGRTK 143 (539)
T ss_pred cceEEEEECCCCCChHHHHHHHHHHHHHHHhCCC-cEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCc-hhhcCCCCC
Confidence 34678543 444 4 4466656678888776665 7777664 3 222 11111100 000011 11232 011100
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 016179 99 YKFRVRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
..--..++++.+.+++.+.|.+|.+|.
T Consensus 144 ~~~~e~~~~~~~~l~~~~Id~LviIGG 170 (539)
T TIGR02477 144 IETEEQFAKALTTAKKLKLDGLVIIGG 170 (539)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 001235677889999999999999975
No 272
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=36.79 E-value=1.8e+02 Score=28.70 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
+.++.+.+++.++|+||++|. +-..-+|+.+.
T Consensus 69 v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~va 100 (370)
T cd08551 69 VDAAVAAYREEGCDGVIAVGG-GSVLDTAKAIA 100 (370)
T ss_pred HHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHH
Confidence 334556677889999999985 35666665543
No 273
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=36.64 E-value=3e+02 Score=25.85 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=19.9
Q ss_pred Hcccceehh-h---HHH--H-HHHHcCCCEEEEEcC
Q 016179 319 ASRVALCTS-G---TVA--V-ELQLARLPCVVAYRA 347 (394)
Q Consensus 319 ~ADl~I~~S-G---t~t--l-Ea~a~G~P~Iv~y~~ 347 (394)
.+|++||+- | +.. + -|..+|+|+|++.+.
T Consensus 197 ~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP 232 (256)
T TIGR00715 197 RIDAVVTKASGEQGGELEKVKAAEALGINVIRIARP 232 (256)
T ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCC
Confidence 688899974 3 222 4 455679999998654
No 274
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.27 E-value=2.4e+02 Score=26.48 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=16.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHhccccCCCCCeE
Q 016179 117 PHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAH 150 (394)
Q Consensus 117 PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~ 150 (394)
||+++.+| |..--...+.+++. |||++
T Consensus 157 Pd~l~ViD-p~~e~iAv~EA~kl------gIPVv 183 (252)
T COG0052 157 PDVLFVID-PRKEKIAVKEANKL------GIPVV 183 (252)
T ss_pred CCEEEEeC-CcHhHHHHHHHHHc------CCCEE
Confidence 99999998 22333333344443 89963
No 275
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=36.13 E-value=2.4e+02 Score=25.16 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=26.6
Q ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 016179 30 GELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGG 69 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg 69 (394)
+..||++.+-++-.|-.+..++..+-+.. + ++++.+|.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~-G-~~vi~LG~ 120 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRAN-G-FDVIDLGR 120 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-C-cEEEECCC
Confidence 34578888887778888888777665543 3 67777764
No 276
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=35.98 E-value=49 Score=27.66 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=24.6
Q ss_pred hHHHHHHHcccceehhhH-HHH-HHHHc---------CC-CEEEEEcCChHH
Q 016179 312 LKYDAFSASRVALCTSGT-VAV-ELQLA---------RL-PCVVAYRAHFLT 351 (394)
Q Consensus 312 ~~~~~~~~ADl~I~~SGt-~tl-Ea~a~---------G~-P~Iv~y~~~~~~ 351 (394)
....++..||.+|..+|+ .|+ |+... .. |+|++...+..+
T Consensus 46 Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~ 97 (133)
T PF03641_consen 46 RKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWD 97 (133)
T ss_dssp HHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCH
T ss_pred HHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHH
Confidence 344568899999998864 565 54432 44 988765444333
No 277
>PLN02285 methionyl-tRNA formyltransferase
Probab=35.79 E-value=46 Score=32.66 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHhcCCCEEEEeCC
Q 016179 108 TIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~~ 125 (394)
+.+.+++.+||++|+.+|
T Consensus 85 ~~~~l~~~~~Dliv~~~~ 102 (334)
T PLN02285 85 FLSALRELQPDLCITAAY 102 (334)
T ss_pred HHHHHHhhCCCEEEhhHh
Confidence 345677899999998875
No 278
>PRK03202 6-phosphofructokinase; Provisional
Probab=35.62 E-value=3.1e+02 Score=26.74 Aligned_cols=48 Identities=17% Similarity=0.082 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEE
Q 016179 103 VRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFH 152 (394)
Q Consensus 103 ~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~ 152 (394)
..++++.+.+++++.|.+|.+|. +-++.-+..|.+.. .+.-++|.+++
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGG-d~s~~~a~~L~e~~-i~vigiPkTID 127 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGG-DGSYMGAKRLTEHG-IPVIGLPGTID 127 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHHHhcC-CcEEEeccccc
Confidence 35677889999999999999974 23555566666432 11225665444
No 279
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=35.20 E-value=1.9e+02 Score=28.49 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHHHHH
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLLKQL 136 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l 136 (394)
+.++.+.+++.++|+||++|. +...-.++.+
T Consensus 72 v~~~~~~~~~~~~D~IIavGG-GSviD~aK~i 102 (357)
T cd08181 72 IMEAVEIAKKFNADFVIGIGG-GSPLDAAKAI 102 (357)
T ss_pred HHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 344667788899999999985 3456666543
No 280
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=35.19 E-value=1.8e+02 Score=26.40 Aligned_cols=18 Identities=11% Similarity=-0.103 Sum_probs=14.8
Q ss_pred HHHHHHhcCCCEEEEeCC
Q 016179 108 TIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~~ 125 (394)
+.+.+++++||++++.+|
T Consensus 70 ~~~~l~~~~~Dliv~agy 87 (207)
T PLN02331 70 LVDALRGAGVDFVLLAGY 87 (207)
T ss_pred HHHHHHhcCCCEEEEeCc
Confidence 456678899999999876
No 281
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=35.06 E-value=1.3e+02 Score=23.58 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=18.8
Q ss_pred HHHHHHHcccceehhhHH----HH-H-HHHcCCCEEEEE
Q 016179 313 KYDAFSASRVALCTSGTV----AV-E-LQLARLPCVVAY 345 (394)
Q Consensus 313 ~~~~~~~ADl~I~~SGt~----tl-E-a~a~G~P~Iv~y 345 (394)
..+.+..+|++++.+=.. .+ | +.-.++|+.++.
T Consensus 40 ~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 40 LEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcC
Confidence 334455566666666332 23 2 445789988764
No 282
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=34.89 E-value=1.9e+02 Score=29.60 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 104 RLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
...++.+.+++++.|.++.+|. +-++.-|..+.
T Consensus 160 ~~~~iv~~L~~~~I~~L~vIGG-dgT~~gA~~l~ 192 (443)
T PRK06830 160 DPEEIVDTLERMNINILFVIGG-DGTLRGASAIA 192 (443)
T ss_pred hHHHHHHHHHHcCCCEEEEeCC-chHHHHHHHHH
Confidence 3567889999999999999974 23444444443
No 283
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=34.64 E-value=2.1e+02 Score=28.53 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCchHHHHHHH
Q 016179 106 KETIEAALLFRPHAVVTVDSKGFSFRLLKQL 136 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l 136 (394)
.+..+.++++++|+||++|. |...-.++.+
T Consensus 74 ~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 103 (383)
T cd08186 74 DEAAKLGREFGAQAVIAIGG-GSPIDSAKSA 103 (383)
T ss_pred HHHHHHHHHcCCCEEEEeCC-ccHHHHHHHH
Confidence 34556777899999999975 3455555544
No 284
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=34.51 E-value=38 Score=32.28 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCC
Q 016179 106 KETIEAALLFRPHAVVTVDSK 126 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~~ 126 (394)
.++.+++++.+||++|.||+-
T Consensus 144 ~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHHHHHHHHcCCCEEEEeCch
Confidence 346788999999999999863
No 285
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=34.35 E-value=2.7e+02 Score=28.16 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCCEEEEeCC
Q 016179 104 RLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
.++++.+.+++++.|.+|.+|.
T Consensus 100 ~~~~~~~~L~~~~Id~Li~IGG 121 (403)
T PRK06555 100 PLKVAAERLAADGVDILHTIGG 121 (403)
T ss_pred HHHHHHHHHHHcCCCEEEEECC
Confidence 3567889999999999999974
No 286
>PRK09271 flavodoxin; Provisional
Probab=34.35 E-value=2.4e+02 Score=24.10 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=24.8
Q ss_pred ceEEEEeCCchHHHH--HHHHHHHHHhcCCCCeEEEEe
Q 016179 32 LRVFIVAGEVSGDSI--GSRLMSAMKKLAPLPVSFSGV 67 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~--a~~l~~~L~~~~~~~~~~~g~ 67 (394)
|||+|+-++..|... |-.|++.|++.+.. +++.-+
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~-v~~~~~ 37 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHE-VDWVET 37 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCe-eEEEec
Confidence 689998888778766 66688888876543 554433
No 287
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=34.21 E-value=3.3e+02 Score=24.07 Aligned_cols=101 Identities=14% Similarity=0.110 Sum_probs=42.0
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHc
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 320 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~A 320 (394)
+.|-+=.-|-| |++. +...++.+.+++|+.++++-+... .-.+..++...+ ...+.+++.-....+..++..-
T Consensus 22 ~~iWiHa~SvG-E~~a----~~~Li~~l~~~~p~~~illT~~T~-tg~~~~~~~~~~-~v~~~~~P~D~~~~~~rfl~~~ 94 (186)
T PF04413_consen 22 PLIWIHAASVG-EVNA----ARPLIKRLRKQRPDLRILLTTTTP-TGREMARKLLPD-RVDVQYLPLDFPWAVRRFLDHW 94 (186)
T ss_dssp T-EEEE-SSHH-HHHH----HHHHHHHHTT---TS-EEEEES-C-CHHHHHHGG-GG-G-SEEE---SSHHHHHHHHHHH
T ss_pred CcEEEEECCHH-HHHH----HHHHHHHHHHhCCCCeEEEEecCC-chHHHHHHhCCC-CeEEEEeCccCHHHHHHHHHHh
Confidence 67888777766 5544 334566777788999988877642 223334333322 2234444321011123333332
Q ss_pred --ccceehhh----HHHHHHHHcCCCEEEEE-cCC
Q 016179 321 --RVALCTSG----TVAVELQLARLPCVVAY-RAH 348 (394)
Q Consensus 321 --Dl~I~~SG----t~tlEa~a~G~P~Iv~y-~~~ 348 (394)
|++|..=+ ....++...|+|++++. +++
T Consensus 95 ~P~~~i~~EtElWPnll~~a~~~~ip~~LvNarls 129 (186)
T PF04413_consen 95 RPDLLIWVETELWPNLLREAKRRGIPVVLVNARLS 129 (186)
T ss_dssp --SEEEEES----HHHHHH-----S-EEEEEE---
T ss_pred CCCEEEEEccccCHHHHHHHhhcCCCEEEEeeeec
Confidence 66665544 23348999999999884 444
No 288
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=34.04 E-value=38 Score=32.08 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCEEEEeCC
Q 016179 106 KETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~ 125 (394)
.++.+++++.+||++|.||+
T Consensus 143 ~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred HHHHHHHHHhCCCEEEEeCc
Confidence 35678899999999999986
No 289
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=33.73 E-value=1e+02 Score=27.80 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=37.1
Q ss_pred CCCceEEEEeCC-chHHHHHH---HHHHHHHhcCCCCeEEEEecChh-h-HhccCcccc------ccCcceeccHHHh--
Q 016179 29 DGELRVFIVAGE-VSGDSIGS---RLMSAMKKLAPLPVSFSGVGGSM-M-SEQGMKSLF------PMEDIAVMGIWEL-- 94 (394)
Q Consensus 29 ~~~~kIlI~aG~-~sGh~~a~---~l~~~L~~~~~~~~~~~g~gg~~-m-~~~g~~~~~------~~~~l~~~G~~~~-- 94 (394)
+.+.|||..=|. ++|.++-. +|.+.|.+ .. ++|+++-|+. . ...++.... ....-+..++...
T Consensus 2 ~~k~riLcLHG~~~na~if~~q~~~l~~~l~~--~~-~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 78 (212)
T PF03959_consen 2 TRKPRILCLHGYGQNAEIFRQQTSALRKALKK--LD-FEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDD 78 (212)
T ss_dssp ----EEEEE--TT--HHHHHHHTHHHHHHHHH--TT--EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S
T ss_pred CCCceEEEeCCCCcCHHHHHHHHHHHHHHHhh--Cc-EEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCC
Confidence 357788876554 88988733 46666655 23 7888877663 2 122222110 0000111111110
Q ss_pred -hhhHHHHHHHHHHHHHHHHhcCC-CEEEEe
Q 016179 95 -LPHIYKFRVRLKETIEAALLFRP-HAVVTV 123 (394)
Q Consensus 95 -l~~~~~~~~~~~~~~~~i~~~~P-D~Vi~~ 123 (394)
-.....+...+..+.+.+++..| |.|+++
T Consensus 79 ~~~~~~~~~~sl~~l~~~i~~~GPfdGvlGF 109 (212)
T PF03959_consen 79 DDHEYEGLDESLDYLRDYIEENGPFDGVLGF 109 (212)
T ss_dssp -SGGG---HHHHHHHHHHHHHH---SEEEEE
T ss_pred CcccccCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 11123344566677788888886 999876
No 290
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=33.58 E-value=2.3e+02 Score=24.88 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=48.9
Q ss_pred ceEEEEeCCchH-HHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHH
Q 016179 32 LRVFIVAGEVSG-DSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETI 109 (394)
Q Consensus 32 ~kIlI~aG~~sG-h~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~ 109 (394)
|||+++..-.|| |-+ +--+++.+ + . +++++..-++...- .+. | ..+. + +.
T Consensus 1 M~ILlle~y~ggSHk~~~~~L~~~~-~--~-~~~lltLP~r~w~W-------RmR-----g--~AL~----~------a~ 52 (168)
T PF12038_consen 1 MRILLLEPYYGGSHKQWADGLAAHS-E--H-EWTLLTLPARKWHW-------RMR-----G--AALY----F------AQ 52 (168)
T ss_pred CeEEEEccccccCHHHHHHHHHHhc-c--C-CEEEEEcCCCcccc-------ccC-----C--CHHH----H------hh
Confidence 789887777555 988 55666665 1 3 37776664432110 000 0 0110 1 12
Q ss_pred HHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEEeecCc
Q 016179 110 EAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFHYVAPS 157 (394)
Q Consensus 110 ~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~yv~~~ 157 (394)
++......|++++++-- ++.-...|... . .++|.++||+.||
T Consensus 53 ~~~~~~~~dll~aTsml--dLa~l~gL~p~-l---~~~p~ilYFHENQ 94 (168)
T PF12038_consen 53 QIPLSHSYDLLFATSML--DLATLRGLRPD-L---ANVPKILYFHENQ 94 (168)
T ss_pred ccccccCCCEEEeeccc--cHHHHHhhccC-C---CCCCEEEEEecCc
Confidence 34456677999998742 33222233311 1 2788888887676
No 291
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=33.52 E-value=3.2e+02 Score=25.17 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=21.0
Q ss_pred eEEEEeCC------chH-HHHHHHHHHHHHhcCCCCeEEEEecChhh
Q 016179 33 RVFIVAGE------VSG-DSIGSRLMSAMKKLAPLPVSFSGVGGSMM 72 (394)
Q Consensus 33 kIlI~aG~------~sG-h~~a~~l~~~L~~~~~~~~~~~g~gg~~m 72 (394)
||+++|.| +|| -..+..|.++|.+++.+ +.++-..-..+
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~-V~Vi~P~y~~~ 46 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHD-VRVIMPKYGFI 46 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-E-EEEEEE-THHH
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCe-EEEEEccchhh
Confidence 46666655 344 22246788999888764 77665443333
No 292
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=33.23 E-value=94 Score=26.05 Aligned_cols=44 Identities=25% Similarity=0.527 Sum_probs=30.0
Q ss_pred eEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecChh-----hHhccCc
Q 016179 33 RVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSM-----MSEQGMK 78 (394)
Q Consensus 33 kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg~~-----m~~~g~~ 78 (394)
||.++=|-+|| .+..+++.||+..|++++++++|... |-++|..
T Consensus 1 ~I~VIDGQGGG--iG~~iv~~lr~~~~~~~eI~AlGTNa~AT~~MlKaGA~ 49 (131)
T PF12953_consen 1 RIAVIDGQGGG--IGKQIVEKLRKELPEEVEIIALGTNAIATSAMLKAGAN 49 (131)
T ss_pred CEEEEeCCCCh--hHHHHHHHHHHhCCCCcEEEEEehhHHHHHHHHHcCCC
Confidence 35555555554 45678899999887559999999764 4455543
No 293
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=32.75 E-value=3.2e+02 Score=27.34 Aligned_cols=19 Identities=11% Similarity=0.371 Sum_probs=14.9
Q ss_pred ceEEEEeCCchHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRL 50 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l 50 (394)
|||+|+++|..+|..+.++
T Consensus 1 ~kiliiG~G~~~~~l~~~~ 19 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKL 19 (423)
T ss_pred CEEEEECCChHHHHHHHHH
Confidence 6899999998877765554
No 294
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=32.74 E-value=3.8e+02 Score=26.02 Aligned_cols=83 Identities=7% Similarity=-0.000 Sum_probs=44.2
Q ss_pred HHHhhcCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChH----HHHHHHhhcCCCCEEE
Q 016179 229 DFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE----NYITGLIQKWPVPSIL 304 (394)
Q Consensus 229 ~~r~~lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~----~~l~~~~~~~~~~v~~ 304 (394)
.+++.+|--. ..++..+|.+ |...-.++.+...+ .+.+.+.+...-+.+ +..++...+.+-.+.+
T Consensus 143 Ti~E~~g~l~-g~k~a~vGDg-----NNv~nSl~~~~a~~-----G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~ 211 (310)
T COG0078 143 TIKEHFGSLK-GLKLAYVGDG-----NNVANSLLLAAAKL-----GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL 211 (310)
T ss_pred HHHHhcCccc-CcEEEEEcCc-----chHHHHHHHHHHHh-----CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE
Confidence 4556666322 3467777765 22222344455544 455555544322211 1222223333434554
Q ss_pred ecCCCcchHHHHHHHcccceehh
Q 016179 305 VPGGSSNLKYDAFSASRVALCTS 327 (394)
Q Consensus 305 ~~g~~~~~~~~~~~~ADl~I~~S 327 (394)
. +|..++.+.||++.|..
T Consensus 212 t-----~d~~eAv~gADvvyTDv 229 (310)
T COG0078 212 T-----EDPEEAVKGADVVYTDV 229 (310)
T ss_pred e-----cCHHHHhCCCCEEEecC
Confidence 4 47899999999999977
No 295
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=32.30 E-value=3e+02 Score=30.36 Aligned_cols=20 Identities=15% Similarity=-0.077 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCCEEEEeC
Q 016179 105 LKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~ 124 (394)
+.++..++.+.=+-+|+.+|
T Consensus 602 ~~~i~dY~~~Rv~A~v~a~g 621 (781)
T PRK00941 602 YEEIADYILNRVGACGVAWG 621 (781)
T ss_pred HHHHHHHHHhhccEEEEecc
Confidence 66788888887788888886
No 296
>PRK14072 6-phosphofructokinase; Provisional
Probab=32.13 E-value=3.1e+02 Score=27.83 Aligned_cols=34 Identities=6% Similarity=-0.095 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 103 VRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 103 ~~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
....++.+.+++++.|.+|.+|.- -++.-|.+|.
T Consensus 90 ~~~~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~ 123 (416)
T PRK14072 90 AEYERLLEVFKAHDIGYFFYNGGN-DSMDTALKVS 123 (416)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCh-HHHHHHHHHH
Confidence 356788999999999999999742 2444444443
No 297
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=31.89 E-value=2.3e+02 Score=29.95 Aligned_cols=93 Identities=15% Similarity=0.248 Sum_probs=47.5
Q ss_pred CceEEEE-eCC-c-hHHHHHHHHHHHHHhcCCCCeEEEEec-C-hhh-HhccCccc-cccCcc-eeccHHHhhhhH---H
Q 016179 31 ELRVFIV-AGE-V-SGDSIGSRLMSAMKKLAPLPVSFSGVG-G-SMM-SEQGMKSL-FPMEDI-AVMGIWELLPHI---Y 99 (394)
Q Consensus 31 ~~kIlI~-aG~-~-sGh~~a~~l~~~L~~~~~~~~~~~g~g-g-~~m-~~~g~~~~-~~~~~l-~~~G~~~~l~~~---~ 99 (394)
.++|.|+ +|| + |+|.-...+.+.++..+++ .+++|+- | ..+ +..-++.- -....+ ...|. +.+..- .
T Consensus 70 ~~~IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~-~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~-~~LGssR~k~ 147 (555)
T PRK07085 70 PLKVGVILSGGQAPGGHNVIAGLFDGLKKLNPD-SKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGF-DMIGSGRTKI 147 (555)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHHhcCC-CEEEEEecChHHhcCCCeEECCHHHHhHHHhCCCh-hhhcCCCCCC
Confidence 4677554 344 4 4465556687877776665 7777663 3 222 11111100 000111 11222 111110 0
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCC
Q 016179 100 KFRVRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 100 ~~~~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
.-...+.++.+.+++.+.|.+|.+|.
T Consensus 148 ~~~e~~~~i~~~l~~~~Id~LviIGG 173 (555)
T PRK07085 148 ETEEQKEACLETVKKLKLDGLVIIGG 173 (555)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11235677889999999999999874
No 298
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=31.82 E-value=2.4e+02 Score=22.37 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=24.3
Q ss_pred HHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEE
Q 016179 264 TVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSI 303 (394)
Q Consensus 264 a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~ 303 (394)
.++++.+.+|+.+||+++...+.--+...+.+++++.++.
T Consensus 54 ~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ 93 (100)
T PF09949_consen 54 NIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRIL 93 (100)
T ss_pred HHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCEE
Confidence 3455666789999999998654322333444555554443
No 299
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.72 E-value=1.1e+02 Score=25.83 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=26.9
Q ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 016179 30 GELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGG 69 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg 69 (394)
.+.||++.+-+.-+|-.+..+...+.+.. + ++++..|.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G-~eVi~LG~ 39 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA-G-FEVINLGV 39 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC-C-CEEEECCC
Confidence 45678888888888988888666554432 3 77777763
No 300
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=31.43 E-value=2.2e+02 Score=28.56 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 107 ETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 107 ~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
++.+.++++++|+||++|. +...-+++.+.
T Consensus 69 ~~~~~~~~~~~D~IIaiGG-GS~iD~AK~iA 98 (398)
T cd08178 69 KGLELMNSFKPDTIIALGG-GSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHhcCCCEEEEeCC-ccHHHHHHHHH
Confidence 4556677889999999975 34565555543
No 301
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=31.34 E-value=1.4e+02 Score=28.90 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=20.6
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEe
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGV 67 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~ 67 (394)
|++|+++|.+ ..+++..+.+.++.++ .+++.+
T Consensus 1 ~~iLVTGGaG---FIGsnfvr~~~~~~~d-~~v~~~ 32 (340)
T COG1088 1 MKILVTGGAG---FIGSNFVRYILNKHPD-DHVVNL 32 (340)
T ss_pred CcEEEecCcc---hHHHHHHHHHHhcCCC-ceEEEE
Confidence 4566655443 4488899988887775 555433
No 302
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=31.33 E-value=2.6e+02 Score=24.89 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=18.5
Q ss_pred hcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCe
Q 016179 114 LFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPA 149 (394)
Q Consensus 114 ~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~ 149 (394)
...||+||.+|. .-+..+...+.+. +||+
T Consensus 125 ~~~Pdlviv~~~-~~~~~ai~Ea~~l------~IP~ 153 (193)
T cd01425 125 FRLPDLVIVLDP-RKEHQAIREASKL------GIPV 153 (193)
T ss_pred ccCCCEEEEeCC-ccchHHHHHHHHc------CCCE
Confidence 347999999973 3344444454444 7996
No 303
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=31.01 E-value=4e+02 Score=25.04 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCC-CCeEEEEecCh
Q 016179 44 DSIGSRLMSAMKKLAP-LPVSFSGVGGS 70 (394)
Q Consensus 44 h~~a~~l~~~L~~~~~-~~~~~~g~gg~ 70 (394)
|.+|.+.+-.||++.. .++.++.+|.+
T Consensus 38 D~~AlE~Alrlke~~~g~~Vtvvs~Gp~ 65 (256)
T PRK03359 38 DLNAIEAACQLKQQAAEAQVTALSVGGK 65 (256)
T ss_pred hHHHHHHHHHHhhhcCCCEEEEEEECCc
Confidence 8888888888888753 24778888864
No 304
>PRK14071 6-phosphofructokinase; Provisional
Probab=30.98 E-value=4.6e+02 Score=26.03 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEE
Q 016179 104 RLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFH 152 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~ 152 (394)
...++.+.+++++.|.++.+|.- -++..+..|.+....+.-++|.+++
T Consensus 95 ~~~~~~~~l~~~~Id~Li~IGGd-gS~~~a~~L~~~~~i~vIgiPkTID 142 (360)
T PRK14071 95 RSQEIIDGYHSLGLDALIGIGGD-GSLAILRRLAQQGGINLVGIPKTID 142 (360)
T ss_pred HHHHHHHHHHHcCCCEEEEECCh-hHHHHHHHHHHhcCCcEEEeccccc
Confidence 45678899999999999999742 2455566665432111225555444
No 305
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=30.49 E-value=37 Score=25.76 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCEEEEEcCChHHHHH
Q 016179 330 VAVELQLARLPCVVAYRAHFLTEWF 354 (394)
Q Consensus 330 ~tlEa~a~G~P~Iv~y~~~~~~~~~ 354 (394)
-.+|+++||+|+|. ...+.+...+
T Consensus 14 r~~E~~a~G~~vi~-~~~~~~~~~~ 37 (92)
T PF13524_consen 14 RIFEAMACGTPVIS-DDSPGLREIF 37 (92)
T ss_pred HHHHHHHCCCeEEE-CChHHHHHHc
Confidence 34599999999886 4445544444
No 306
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=30.46 E-value=3.3e+02 Score=26.75 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=34.8
Q ss_pred hhcCCCCEEEecCCCcchHHHHHH--Hccccee-------------hhhHHHH--HHHHcCCCEEEEEcCCh
Q 016179 295 IQKWPVPSILVPGGSSNLKYDAFS--ASRVALC-------------TSGTVAV--ELQLARLPCVVAYRAHF 349 (394)
Q Consensus 295 ~~~~~~~v~~~~g~~~~~~~~~~~--~ADl~I~-------------~SGt~tl--Ea~a~G~P~Iv~y~~~~ 349 (394)
+.+.+.++.++.. +.+..+|+ ..|.++. +.||..+ =|-..|+|++++-+...
T Consensus 202 L~~~GI~vtlI~D---sav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~k 270 (331)
T TIGR00512 202 LVQEGIPATLITD---SMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTST 270 (331)
T ss_pred HHHCCCCEEEEcc---cHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccc
Confidence 4456778887763 35677787 6777654 5577665 55677999998754433
No 307
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=30.34 E-value=1.7e+02 Score=24.23 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=27.1
Q ss_pred EEEeCCCcChHHHHHHHhhcC-CCCEEEecCCCcchHHHHHHHcccceehhhH
Q 016179 278 VIHVAPNRHVENYITGLIQKW-PVPSILVPGGSSNLKYDAFSASRVALCTSGT 329 (394)
Q Consensus 278 vi~~g~~~~~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt 329 (394)
+.++.++.+ ..+++.+.+ +..+.+.. .++..+.+..+|++|+.++.
T Consensus 39 i~i~nRt~~---ra~~l~~~~~~~~~~~~~---~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 39 ITIVNRTPE---RAEALAEEFGGVNIEAIP---LEDLEEALQEADIVINATPS 85 (135)
T ss_dssp EEEEESSHH---HHHHHHHHHTGCSEEEEE---GGGHCHHHHTESEEEE-SST
T ss_pred EEEEECCHH---HHHHHHHHcCccccceee---HHHHHHHHhhCCeEEEecCC
Confidence 445555432 233333332 22466664 36788999999999998764
No 308
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=30.23 E-value=8.2e+02 Score=27.42 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=53.4
Q ss_pred EEECCCcHHHHHhhHHHHHHHHHHhhhhCCCe----EEEEEeCCCc----ChHH---HHHHHhh----cCC----CCEEE
Q 016179 244 SLLPGSRLQEVARMLPIFAKTVELLKDSFPEL----ITVIHVAPNR----HVEN---YITGLIQ----KWP----VPSIL 304 (394)
Q Consensus 244 lllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~----~~vi~~g~~~----~~~~---~l~~~~~----~~~----~~v~~ 304 (394)
+++|--|-.-.|. ++.=+.|++++.+++|+. .++.++-+.. ++.+ .+++... +++ .++++
T Consensus 341 ~ilgVDrlD~~KG-i~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~ 419 (854)
T PLN02205 341 MLLGVDDMDIFKG-ISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVL 419 (854)
T ss_pred EEEEccCcccccC-HHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEE
Confidence 4445566654444 455567889988888864 4444444321 1211 1222221 122 13555
Q ss_pred ecC-CCcchHHHHHHHcccceehh---hH--HHHHHHHcCC
Q 016179 305 VPG-GSSNLKYDAFSASRVALCTS---GT--VAVELQLARL 339 (394)
Q Consensus 305 ~~g-~~~~~~~~~~~~ADl~I~~S---Gt--~tlEa~a~G~ 339 (394)
+.. ...++..++|++||+++..| |- +.-|-.+|..
T Consensus 420 ~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~ 460 (854)
T PLN02205 420 IDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQ 460 (854)
T ss_pred EecCCCHHHHHHHHHhccEEEeccccccccccchheeEEcc
Confidence 522 11467888999999999988 54 2338888764
No 309
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=30.02 E-value=2.4e+02 Score=27.37 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=41.3
Q ss_pred CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHH
Q 016179 238 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF 317 (394)
Q Consensus 238 ~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 317 (394)
++..+++++|-+.-++ . .++++..+ .+++-+.+.+.+.+-.+.+.+...+.+.++... ++..++.
T Consensus 126 ~~~~~lgiiG~G~qA~--~----~l~al~~~----~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~-----~~~~eav 190 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAW--T----QLEALSRV----FDLEEVSVYCRTPSTREKFALRASDYEVPVRAA-----TDPREAV 190 (325)
T ss_pred CCCCEEEEECCCHHHH--H----HHHHHHhc----CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEe-----CCHHHHh
Confidence 4667889886444322 1 22333332 235556666655432222323333344334333 3677889
Q ss_pred HHcccceehhhH
Q 016179 318 SASRVALCTSGT 329 (394)
Q Consensus 318 ~~ADl~I~~SGt 329 (394)
+.||++++...+
T Consensus 191 ~~aDiVitaT~s 202 (325)
T TIGR02371 191 EGCDILVTTTPS 202 (325)
T ss_pred ccCCEEEEecCC
Confidence 999999987654
No 310
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.86 E-value=69 Score=28.20 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=35.7
Q ss_pred CCceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCcccccc
Q 016179 30 GELRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPM 83 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~ 83 (394)
..|||+|++--++|-.- ...+++.|++++ +.+-|+-.+.+++-|-...|..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~I 55 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKI 55 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEE
Confidence 56889888888999777 778999998763 5666665566665554444443
No 311
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=29.66 E-value=2.6e+02 Score=27.67 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCchHHHHHHHH
Q 016179 105 LKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 137 (394)
Q Consensus 105 ~~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~ 137 (394)
+.++.+.++++++|+||++|. +...-.++.+.
T Consensus 69 v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKaia 100 (375)
T cd08194 69 VEEGVKLAKEGGCDVIIALGG-GSPIDTAKAIA 100 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHH
Confidence 344567778899999999985 35666665543
No 312
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=29.59 E-value=2e+02 Score=29.19 Aligned_cols=80 Identities=10% Similarity=0.157 Sum_probs=45.7
Q ss_pred HHHhhcC-CCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecC
Q 016179 229 DFKNKYS-VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPG 307 (394)
Q Consensus 229 ~~r~~lg-l~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g 307 (394)
.+++.+| +. + ..++++|-+- +.. . +++.|..+ +++-+.++..+ ++ ..+++..+.+ ..++.
T Consensus 168 lA~~~~~~L~-~-~~vlvIGAGe---m~~---l---va~~L~~~--g~~~i~IaNRT--~e-rA~~La~~~~--~~~~~- 228 (414)
T COG0373 168 LAKRIFGSLK-D-KKVLVIGAGE---MGE---L---VAKHLAEK--GVKKITIANRT--LE-RAEELAKKLG--AEAVA- 228 (414)
T ss_pred HHHHHhcccc-c-CeEEEEcccH---HHH---H---HHHHHHhC--CCCEEEEEcCC--HH-HHHHHHHHhC--Ceeec-
Confidence 3445565 43 3 3577766432 222 1 23445442 45556666543 32 3445555554 33443
Q ss_pred CCcchHHHHHHHcccceehhhH
Q 016179 308 GSSNLKYDAFSASRVALCTSGT 329 (394)
Q Consensus 308 ~~~~~~~~~~~~ADl~I~~SGt 329 (394)
.+++.+++..+|++|+.+|+
T Consensus 229 --l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 229 --LEELLEALAEADVVISSTSA 248 (414)
T ss_pred --HHHHHHhhhhCCEEEEecCC
Confidence 36899999999999999875
No 313
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=29.50 E-value=76 Score=28.54 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEeC
Q 016179 103 VRLKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 103 ~~~~~~~~~i~~~~PD~Vi~~~ 124 (394)
+....+.+.|.+.+||+|+++|
T Consensus 47 ~s~~~l~~~i~~~qPd~vl~iG 68 (207)
T COG2039 47 KSIDALVQAIAEVQPDLVLAIG 68 (207)
T ss_pred HHHHHHHHHHHhhCCCeEEEec
Confidence 4455567888899999999998
No 314
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=29.46 E-value=1.3e+02 Score=29.22 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=39.0
Q ss_pred eCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHHHHhcC
Q 016179 38 AGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFR 116 (394)
Q Consensus 38 aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~i~~~~ 116 (394)
+|-.++|+. |..+.+++.+.. . ..|++..|+ +...|+.+.+ ..++++..
T Consensus 33 ~gF~a~~l~eA~~I~~~m~~~~-~-tvfl~~tg~---------------~vssGlR~ii-------------a~LIr~~~ 82 (318)
T COG1899 33 GGFQARRLAEAVEILREMLESR-V-TVFLGLTGN---------------LVSSGLREII-------------ADLIRNGL 82 (318)
T ss_pred ccccchhHHHHHHHHHHHHhhc-C-EEEEecccc---------------ccchhHHHHH-------------HHHHHcCC
Confidence 445788999 999998877643 2 557777653 2234555543 35667788
Q ss_pred CCEEEEeCC
Q 016179 117 PHAVVTVDS 125 (394)
Q Consensus 117 PD~Vi~~~~ 125 (394)
.|++|.|+.
T Consensus 83 idvvVTTgg 91 (318)
T COG1899 83 IDVVVTTGG 91 (318)
T ss_pred eEEEEecCC
Confidence 999998863
No 315
>PRK06823 ornithine cyclodeaminase; Validated
Probab=29.44 E-value=1.7e+02 Score=28.39 Aligned_cols=80 Identities=8% Similarity=-0.042 Sum_probs=42.6
Q ss_pred CCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHH
Q 016179 237 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 316 (394)
Q Consensus 237 ~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~ 316 (394)
++|..+++++|-+.-+ ..++ +++..+ + +++-+.+.+.+.+..+.+.+..++.+.++... ++..++
T Consensus 125 ~~d~~~l~iiG~G~qA--~~~~----~a~~~v---~-~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~-----~~~~~a 189 (315)
T PRK06823 125 PQHVSAIGIVGTGIQA--RMQL----MYLKNV---T-DCRQLWVWGRSETALEEYRQYAQALGFAVNTT-----LDAAEV 189 (315)
T ss_pred CCCCCEEEEECCcHHH--HHHH----HHHHhc---C-CCCEEEEECCCHHHHHHHHHHHHhcCCcEEEE-----CCHHHH
Confidence 3567788888643322 2222 233332 1 34445566655432222333333334444433 367889
Q ss_pred HHHcccceehhhHHH
Q 016179 317 FSASRVALCTSGTVA 331 (394)
Q Consensus 317 ~~~ADl~I~~SGt~t 331 (394)
.+.||+++|..++.+
T Consensus 190 v~~ADIV~taT~s~~ 204 (315)
T PRK06823 190 AHAANLIVTTTPSRE 204 (315)
T ss_pred hcCCCEEEEecCCCC
Confidence 999999999765433
No 316
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=29.36 E-value=4.3e+02 Score=23.91 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=38.9
Q ss_pred HHHHHHcccceehhhH-HHH----HHHHcCC-CEEEEEcCCh---HHHHHHHhhccCCcc--chhhhhcCCCCcccccCC
Q 016179 314 YDAFSASRVALCTSGT-VAV----ELQLARL-PCVVAYRAHF---LTEWFIRYKAKIPYI--SLPNILLDSPIIPEALLQ 382 (394)
Q Consensus 314 ~~~~~~ADl~I~~SGt-~tl----Ea~a~G~-P~Iv~y~~~~---~~~~~a~~~vk~~~~--~l~Nil~~~~i~pEliq~ 382 (394)
......||.+|+-+|+ .|+ |++..+. |.....+... ...+....+. ++ -+..-...++-..+++.-
T Consensus 105 ~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~---~~d~~~i~~~~i~~~~~~~~~~ 181 (205)
T COG1611 105 RAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLE---FLDPHLIVEGLISEADRELLIV 181 (205)
T ss_pred HHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHH---HhCHHHHHhhcCChhhhhheee
Confidence 3578899999999964 332 6666666 6553222220 1111111111 11 122222334445566666
Q ss_pred CCCHHHHHHHh
Q 016179 383 ACTPDTLTHLL 393 (394)
Q Consensus 383 ~~~~~~i~~~~ 393 (394)
..+++.+.+++
T Consensus 182 ~~~~~~~~~~~ 192 (205)
T COG1611 182 VDDAEEAIDAI 192 (205)
T ss_pred ecCHHHHHHHH
Confidence 66776666554
No 317
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=29.35 E-value=4.5e+02 Score=24.76 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=17.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHhccccCCCCCe
Q 016179 116 RPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPA 149 (394)
Q Consensus 116 ~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~ 149 (394)
.||+||.+|- .-...+...+.+. +||+
T Consensus 157 ~Pd~iii~d~-~~~~~ai~Ea~kl------~IPi 183 (258)
T PRK05299 157 LPDALFVVDP-NKEHIAVKEARKL------GIPV 183 (258)
T ss_pred CCCEEEEeCC-CccHHHHHHHHHh------CCCE
Confidence 6999999973 2333334444444 7996
No 318
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=29.32 E-value=72 Score=30.46 Aligned_cols=27 Identities=4% Similarity=-0.177 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 016179 99 YKFRVRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
..+..++.++.+.+++.+||+||.++.
T Consensus 31 ~~~~~a~~~i~~~v~~~~PDviVvi~s 57 (279)
T PRK13365 31 KPLFDGYEPVAAWLAEQKADVLVFFYN 57 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 356778889999999999999999964
No 319
>PRK05920 aromatic acid decarboxylase; Validated
Probab=29.23 E-value=1.1e+02 Score=27.83 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=24.8
Q ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEE
Q 016179 30 GELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSG 66 (394)
Q Consensus 30 ~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g 66 (394)
+.+||++.-.|.+|=.++..+++.|++.+.+ +.++-
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~g~~-V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAADYE-VHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHCCCE-EEEEE
Confidence 4567877665666666799999999886543 54443
No 320
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=29.20 E-value=1.8e+02 Score=28.12 Aligned_cols=79 Identities=10% Similarity=0.169 Sum_probs=37.1
Q ss_pred CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHH
Q 016179 238 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF 317 (394)
Q Consensus 238 ~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 317 (394)
++..+++++|-+.-+ ..++ +++..+ +| ++=|.+.+.+.+..+.+.+.+.+.+..+... ++..++.
T Consensus 126 ~~~~~l~viGaG~QA--~~~~----~a~~~~---~~-i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~-----~~~~~av 190 (313)
T PF02423_consen 126 PDARTLGVIGAGVQA--RWHL----RALAAV---RP-IKEVRVYSRSPERAEAFAARLRDLGVPVVAV-----DSAEEAV 190 (313)
T ss_dssp TT--EEEEE--SHHH--HHHH----HHHHHH---S---SEEEEE-SSHHHHHHHHHHHHCCCTCEEEE-----SSHHHHH
T ss_pred CCCceEEEECCCHHH--HHHH----HHHHHh---CC-ceEEEEEccChhHHHHHHHhhccccccceec-----cchhhhc
Confidence 456688888644332 2222 233322 33 4446666655432223333334444445433 4688999
Q ss_pred HHcccceehhhHHH
Q 016179 318 SASRVALCTSGTVA 331 (394)
Q Consensus 318 ~~ADl~I~~SGt~t 331 (394)
+.||+++|...+.+
T Consensus 191 ~~aDii~taT~s~~ 204 (313)
T PF02423_consen 191 RGADIIVTATPSTT 204 (313)
T ss_dssp TTSSEEEE----SS
T ss_pred ccCCEEEEccCCCC
Confidence 99999999876655
No 321
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=29.18 E-value=3.8e+02 Score=25.57 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecC-CCcchHHHHHHHcccceehhhHHHH-HHHHc
Q 016179 260 IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPG-GSSNLKYDAFSASRVALCTSGTVAV-ELQLA 337 (394)
Q Consensus 260 ~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g-~~~~~~~~~~~~ADl~I~~SGt~tl-Ea~a~ 337 (394)
.+.+|++.+.++.++..|++.+.. . +..++.+......+.+... ...+||. +|+.||-.|...+|=.- =|.+.
T Consensus 192 Yy~~Ai~~i~~~~~~~~f~ifSDD-~---~w~k~~l~~~~~~~~~~~~~~~~~Dl~-lms~C~~~IisnSTFswW~a~L~ 266 (298)
T PF01531_consen 192 YYKKAIEYIREKVKNPKFFIFSDD-I---EWCKENLKFSNGDVYFSGNNSPYEDLY-LMSQCKHFIISNSTFSWWAAYLS 266 (298)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCC-H---HHHHHHHhhcCCcEEEECCCCHHHHHH-HHHhCCcEEECCChHHHHHHHHC
Confidence 466788888887778888877653 2 2233333332222333321 1145676 69999999998877655 55555
Q ss_pred CCCEEEEEcCChH
Q 016179 338 RLPCVVAYRAHFL 350 (394)
Q Consensus 338 G~P~Iv~y~~~~~ 350 (394)
+-+-|++.+..+.
T Consensus 267 ~~~~i~i~p~~w~ 279 (298)
T PF01531_consen 267 KNDKIVIAPIKWF 279 (298)
T ss_pred CCCCEEEECCccc
Confidence 6676655555443
No 322
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.98 E-value=2.5e+02 Score=24.41 Aligned_cols=35 Identities=29% Similarity=0.239 Sum_probs=23.9
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCC
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAP 283 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~ 283 (394)
..|.++||+.+. +.++.+.|.+++|+++++-...+
T Consensus 49 ~~ifllG~~~~~--------~~~~~~~l~~~yP~l~ivg~~~g 83 (172)
T PF03808_consen 49 KRIFLLGGSEEV--------LEKAAANLRRRYPGLRIVGYHHG 83 (172)
T ss_pred CeEEEEeCCHHH--------HHHHHHHHHHHCCCeEEEEecCC
Confidence 468888887652 22456778888999997754443
No 323
>PRK14982 acyl-ACP reductase; Provisional
Probab=28.92 E-value=1.7e+02 Score=28.80 Aligned_cols=34 Identities=9% Similarity=0.268 Sum_probs=25.6
Q ss_pred hHHHHHHHcccceehhhHH-H--HHHHHcCCCEEEEE
Q 016179 312 LKYDAFSASRVALCTSGTV-A--VELQLARLPCVVAY 345 (394)
Q Consensus 312 ~~~~~~~~ADl~I~~SGt~-t--lEa~a~G~P~Iv~y 345 (394)
++.+++..+|++++.+|.. . +...-+..|+++++
T Consensus 208 ~l~~~l~~aDiVv~~ts~~~~~~I~~~~l~~~~~viD 244 (340)
T PRK14982 208 SLEEALPEADIVVWVASMPKGVEIDPETLKKPCLMID 244 (340)
T ss_pred hHHHHHccCCEEEECCcCCcCCcCCHHHhCCCeEEEE
Confidence 5678999999999988762 2 34445588999886
No 324
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=27.99 E-value=1e+02 Score=29.79 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=27.4
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEec
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVG 68 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~g 68 (394)
...++++-||||++-+ +++.||+++|+ ++++++-
T Consensus 170 ~d~fVagvGTGGTitG--var~Lk~~~p~-i~iv~vd 203 (300)
T COG0031 170 VDAFVAGVGTGGTITG--VARYLKERNPN-VRIVAVD 203 (300)
T ss_pred CCEEEEeCCcchhHHH--HHHHHHhhCCC-cEEEEEC
Confidence 5578999999999974 66778999996 8888763
No 325
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.88 E-value=3e+02 Score=21.61 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=41.6
Q ss_pred CCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHH--HcccceehhhH-----HHHHHHHcCCCEEEE
Q 016179 272 FPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFS--ASRVALCTSGT-----VAVELQLARLPCVVA 344 (394)
Q Consensus 272 ~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~--~ADl~I~~SGt-----~tlEa~a~G~P~Iv~ 344 (394)
.++.+++-++.++.+ ..+...+.++.+ .+ ++..++++ ..|+++..+.. .+.+++..|+++++
T Consensus 23 ~~~~~v~~v~d~~~~---~~~~~~~~~~~~--~~-----~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~- 91 (120)
T PF01408_consen 23 SPDFEVVAVCDPDPE---RAEAFAEKYGIP--VY-----TDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLV- 91 (120)
T ss_dssp TTTEEEEEEECSSHH---HHHHHHHHTTSE--EE-----SSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEE-
T ss_pred CCCcEEEEEEeCCHH---HHHHHHHHhccc--ch-----hHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEE-
Confidence 467888888886532 233334455533 33 35677777 67888776643 44599999998664
Q ss_pred EcCC
Q 016179 345 YRAH 348 (394)
Q Consensus 345 y~~~ 348 (394)
-|.-
T Consensus 92 EKP~ 95 (120)
T PF01408_consen 92 EKPL 95 (120)
T ss_dssp ESSS
T ss_pred EcCC
Confidence 5543
No 326
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=27.70 E-value=1.8e+02 Score=27.02 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=23.8
Q ss_pred EEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcC
Q 016179 242 VISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH 286 (394)
Q Consensus 242 ~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~ 286 (394)
.+++.||.|| |- +. .+++|. +.++++.++.+.++.+
T Consensus 5 sv~ItGaNRG--IG--lg----LVk~ll-k~~~i~~iiat~r~~e 40 (249)
T KOG1611|consen 5 SVFITGANRG--IG--LG----LVKELL-KDKGIEVIIATARDPE 40 (249)
T ss_pred cEEEeccCcc--hh--HH----HHHHHh-cCCCcEEEEEecCChH
Confidence 4899999999 31 22 234444 3478898888887543
No 327
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=27.64 E-value=3.8e+02 Score=27.81 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=14.9
Q ss_pred ceEEEEeCCchHHHHHHHH
Q 016179 32 LRVFIVAGEVSGDSIGSRL 50 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l 50 (394)
||||++++|+..|..+-++
T Consensus 1 mkVLviG~Ggrehal~~~l 19 (486)
T PRK05784 1 MKVLLVGDGAREHALAEAL 19 (486)
T ss_pred CEEEEECCchhHHHHHHHH
Confidence 7899999888888765555
No 328
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=27.59 E-value=1.2e+02 Score=32.07 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=20.5
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEe
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGV 67 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~ 67 (394)
++|++++|++| +|.++.+.+.+.+|.++.+++.
T Consensus 251 K~vLVTGagGS---iGsel~~qil~~~p~~i~l~~~ 283 (588)
T COG1086 251 KTVLVTGGGGS---IGSELCRQILKFNPKEIILFSR 283 (588)
T ss_pred CEEEEeCCCCc---HHHHHHHHHHhcCCCEEEEecC
Confidence 56777766654 5667777777767753334444
No 329
>PTZ00357 methyltransferase; Provisional
Probab=27.49 E-value=1.5e+02 Score=32.28 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=21.4
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCC
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN 284 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~ 284 (394)
.+|+|+|.+||.-+.+ .++|++.+. -+++ |++.-+|
T Consensus 702 vVImVVGAGRGPLVdr----aLrAak~~g---vkVr-IyAVEKN 737 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDE----CLHAVSALG---VRLR-IFAIEKN 737 (1072)
T ss_pred EEEEEEcCCccHHHHH----HHHHHHHcC---CcEE-EEEEecC
Confidence 4699999999964433 445555543 2455 3444455
No 330
>PLN02828 formyltetrahydrofolate deformylase
Probab=27.43 E-value=2.3e+02 Score=26.85 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=20.0
Q ss_pred CCCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEec
Q 016179 29 DGELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVG 68 (394)
Q Consensus 29 ~~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~g 68 (394)
+.++||.|.+.+. ||.. .+|+...+...-+ +++.++-
T Consensus 68 ~~~~riavlvSg~-g~nl-~~ll~~~~~g~l~-~eI~~Vi 104 (268)
T PLN02828 68 DPKYKIAVLASKQ-DHCL-IDLLHRWQDGRLP-VDITCVI 104 (268)
T ss_pred CCCcEEEEEEcCC-ChhH-HHHHHhhhcCCCC-ceEEEEE
Confidence 3567887665554 4444 4566655554322 5555443
No 331
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=27.39 E-value=6e+02 Score=24.90 Aligned_cols=126 Identities=12% Similarity=0.023 Sum_probs=63.3
Q ss_pred HHHHHhhhheeecCcccHH--HHHhc-CCCeEEE----cCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCc
Q 016179 169 KNLAAFVDHILCILPNEEA--ICRLN-GLAATFV----GHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGAT 241 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~~--~~~~~-g~~~~~v----G~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~ 241 (394)
+.+++++|.+.+-.+.... .+.++ ++|+.-- .||--- + .|--.+++++|- -+..
T Consensus 96 rvls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQa-L-----------------aDl~Ti~e~~g~-l~g~ 156 (331)
T PRK02102 96 RVLGRMYDGIEYRGFKQEIVEELAKYSGVPVWNGLTDEWHPTQM-L-----------------ADFMTMKEHFGP-LKGL 156 (331)
T ss_pred HHHhhcCCEEEEECCchHHHHHHHHhCCCCEEECCCCCCChHHH-H-----------------HHHHHHHHHhCC-CCCC
Confidence 4579999999988876532 33332 3443221 233100 0 111234455552 2345
Q ss_pred EEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChH-HHH---HHHhhcCCCCEEEecCCCcchHHHHH
Q 016179 242 VISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE-NYI---TGLIQKWPVPSILVPGGSSNLKYDAF 317 (394)
Q Consensus 242 ~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~-~~l---~~~~~~~~~~v~~~~g~~~~~~~~~~ 317 (394)
+|+++|-.+.. ....++.++..+ +..+.+++.+..... +.+ ++..+.++..+.+. +++.+++
T Consensus 157 ~va~vGd~~~~----v~~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~d~~ea~ 222 (331)
T PRK02102 157 KLAYVGDGRNN----MANSLMVGGAKL-----GMDVRICAPKELWPEEELVALAREIAKETGAKITIT-----EDPEEAV 222 (331)
T ss_pred EEEEECCCccc----HHHHHHHHHHHc-----CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEE-----cCHHHHh
Confidence 78888765321 222344444433 355555554322211 112 22233345445443 4788999
Q ss_pred HHcccceehh
Q 016179 318 SASRVALCTS 327 (394)
Q Consensus 318 ~~ADl~I~~S 327 (394)
..||++.+..
T Consensus 223 ~~aDvvyt~~ 232 (331)
T PRK02102 223 KGADVIYTDV 232 (331)
T ss_pred CCCCEEEEcC
Confidence 9999999964
No 332
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=27.28 E-value=1.2e+02 Score=31.92 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=40.6
Q ss_pred HcccceehhhHHHH-HHHHcCCCEEEEEcCChHHHHH----HHhh-ccCCccchhhhhcCCCCcccccCCC
Q 016179 319 ASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWF----IRYK-AKIPYISLPNILLDSPIIPEALLQA 383 (394)
Q Consensus 319 ~ADl~I~~SGt~tl-Ea~a~G~P~Iv~y~~~~~~~~~----a~~~-vk~~~~~l~Nil~~~~i~pEliq~~ 383 (394)
.+|++|++-||+.+ .. ...+|+|-+ +.+.++..- ++.. -|+-.++-+|+..+-..+-++++-+
T Consensus 54 ~~dviIsrG~ta~~i~~-~~~iPVv~i-~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~ 122 (526)
T TIGR02329 54 RCDVVVAGGSNGAYLKS-RLSLPVIVI-KPTGFDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD 122 (526)
T ss_pred CCcEEEECchHHHHHHH-hCCCCEEEe-cCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc
Confidence 47999999999997 43 568998864 666555332 2322 2345677777776655566665544
No 333
>PRK09134 short chain dehydrogenase; Provisional
Probab=27.05 E-value=4.3e+02 Score=23.97 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=9.8
Q ss_pred CcEEEEECCCcH
Q 016179 240 ATVISLLPGSRL 251 (394)
Q Consensus 240 ~~~IlllgGSrg 251 (394)
..+++++|||.+
T Consensus 9 ~k~vlItGas~g 20 (258)
T PRK09134 9 PRAALVTGAARR 20 (258)
T ss_pred CCEEEEeCCCcH
Confidence 357999999987
No 334
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=27.02 E-value=4.7e+02 Score=24.35 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHHHH-hcCCCEEEEeCCC
Q 016179 48 SRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAAL-LFRPHAVVTVDSK 126 (394)
Q Consensus 48 ~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~i~-~~~PD~Vi~~~~~ 126 (394)
..+.++|+++.|+ .+++.+|.. +.+ | .+.-. -..+...+.+..+.+. +.++|+++.- +-
T Consensus 11 ltv~~~l~~~~p~-~~~iy~~D~----~~~----P-----YG~ks-----~~~i~~~~~~~~~~L~~~~g~d~ivIa-CN 70 (251)
T TIGR00067 11 LSVLKEIRKQLPK-EHYIYVGDT----KRF----P-----YGEKS-----PEFILEYVLELLTFLKERHNIKLLVVA-CN 70 (251)
T ss_pred HHHHHHHHHHCCC-CCEEEEecC----CCC----C-----CCCCC-----HHHHHHHHHHHHHHHHHhCCCCEEEEe-Cc
Confidence 5678888888886 778888732 112 2 11111 1113334445666777 8889987753 21
Q ss_pred CchHHHHHHHHHhccccCCCCCeEEEee
Q 016179 127 GFSFRLLKQLRARYSHERLNGPAHFHYV 154 (394)
Q Consensus 127 ~f~~~la~~l~~~~~~~~~~ip~~~~yv 154 (394)
..+......++++. ++|+ ++-+
T Consensus 71 TA~a~~~~~l~~~~-----~iPi-i~ii 92 (251)
T TIGR00067 71 TASALALEDLQRNF-----DFPV-VGVI 92 (251)
T ss_pred hHHHHHHHHHHHHC-----CCCE-Eeec
Confidence 12323344565542 6884 6643
No 335
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=26.77 E-value=76 Score=26.15 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=21.0
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEE
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFS 65 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~ 65 (394)
|||++...|.++-.++..+++.|++.+.+ +.++
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~-v~vv 33 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWE-VRVV 33 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSE-EEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCE-EEEE
Confidence 67876655555555588999999987443 4443
No 336
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=26.24 E-value=6.3e+02 Score=24.75 Aligned_cols=127 Identities=9% Similarity=-0.055 Sum_probs=62.9
Q ss_pred HHHHHhhhheeecCcccHH--HHHh-cCCCeEEE----cCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCc
Q 016179 169 KNLAAFVDHILCILPNEEA--ICRL-NGLAATFV----GHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGAT 241 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~~--~~~~-~g~~~~~v----G~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~ 241 (394)
+.+++++|.+.+-.+.... .+.+ .++|+.-- -||--- + .|--.+++.+|-+-+..
T Consensus 96 rvls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQa-L-----------------~Dl~Ti~e~~g~~l~gl 157 (334)
T PRK01713 96 RVLGRMYDAIEYRGFKQSIVNELAEYAGVPVFNGLTDEFHPTQM-L-----------------ADVLTMIENCDKPLSEI 157 (334)
T ss_pred HHHHHhCCEEEEEcCchHHHHHHHHhCCCCEEECCCCCCChHHH-H-----------------HHHHHHHHHcCCCcCCc
Confidence 4579999999888775432 2322 23443211 233100 0 01122344454222345
Q ss_pred EEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChH----HHHHHHhhcCCCCEEEecCCCcchHHHHH
Q 016179 242 VISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE----NYITGLIQKWPVPSILVPGGSSNLKYDAF 317 (394)
Q Consensus 242 ~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~----~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 317 (394)
+|+++|-.+-. + ...++.++..+ ++.+.+++.+..... +..++..+..+..+.+. +|+.+++
T Consensus 158 ~ia~vGD~~~~-v---~~Sl~~~~~~~-----g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~-----~d~~~a~ 223 (334)
T PRK01713 158 SYVYIGDARNN-M---GNSLLLIGAKL-----GMDVRICAPKALLPEASLVEMCEKFAKESGARITVT-----DDIDKAV 223 (334)
T ss_pred EEEEECCCccC-H---HHHHHHHHHHc-----CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEE-----cCHHHHh
Confidence 78888764321 2 22334444433 466555554321111 11223333345445443 4789999
Q ss_pred HHcccceehh
Q 016179 318 SASRVALCTS 327 (394)
Q Consensus 318 ~~ADl~I~~S 327 (394)
..||++.+..
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999953
No 337
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=26.16 E-value=6.3e+02 Score=24.73 Aligned_cols=126 Identities=8% Similarity=-0.002 Sum_probs=63.3
Q ss_pred HHHHHhhhheeecCcccHH--HHHhc-CCCeEEE----cCCCchhhhhhcCCCCCCCcccccCCChHHHHhh-cCCCCCC
Q 016179 169 KNLAAFVDHILCILPNEEA--ICRLN-GLAATFV----GHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNK-YSVPSGA 240 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~~--~~~~~-g~~~~~v----G~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-lgl~~~~ 240 (394)
+.+++++|.+.+-.+.... .+.++ .+|+.-- .||--- + .|--.++++ .|- -+.
T Consensus 95 rvls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~~~~HPtQa-L-----------------~Dl~Ti~e~~~g~-l~g 155 (332)
T PRK04284 95 RVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQV-L-----------------ADFLTAKEHLKKP-YKD 155 (332)
T ss_pred HHHHHhCCEEEEecCchHHHHHHHHhCCCCEEECCCCCCChHHH-H-----------------HHHHHHHHHhcCC-cCC
Confidence 4579999999988776432 33332 3443311 233100 0 111224445 342 234
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcCh-HHHH---HHHhhcCCCCEEEecCCCcchHHHH
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV-ENYI---TGLIQKWPVPSILVPGGSSNLKYDA 316 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~-~~~l---~~~~~~~~~~v~~~~g~~~~~~~~~ 316 (394)
.+|+++|-.+. +....++.++..+ +..+.+++.+.... ++.+ ++.....+.++.+. +++.++
T Consensus 156 ~kia~vGD~~~----~v~~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~d~~ea 221 (332)
T PRK04284 156 IKFTYVGDGRN----NVANALMQGAAIM-----GMDFHLVCPKELNPDDELLNKCKEIAAETGGKITIT-----DDIDEG 221 (332)
T ss_pred cEEEEecCCCc----chHHHHHHHHHHc-----CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----cCHHHH
Confidence 57888876432 1222344444433 45655555432111 1222 22223345455543 478899
Q ss_pred HHHcccceehh
Q 016179 317 FSASRVALCTS 327 (394)
Q Consensus 317 ~~~ADl~I~~S 327 (394)
+..||++.+.+
T Consensus 222 ~~~aDvvy~~~ 232 (332)
T PRK04284 222 VKGSDVIYTDV 232 (332)
T ss_pred hCCCCEEEECC
Confidence 99999999964
No 338
>PLN02562 UDP-glycosyltransferase
Probab=25.93 E-value=6.9e+02 Score=25.45 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=25.1
Q ss_pred ceEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEE
Q 016179 32 LRVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFS 65 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~ 65 (394)
..|++..--.-||+. ...+++.|..++-. ++++
T Consensus 7 ~HVVlvPfPaqGHi~PmL~LAk~Las~G~~-VT~v 40 (448)
T PLN02562 7 PKIILVPYPAQGHVTPMLKLASAFLSRGFE-PVVI 40 (448)
T ss_pred cEEEEEcCccccCHHHHHHHHHHHHhCCCE-EEEE
Confidence 468888888889999 88999999876432 4443
No 339
>PRK12743 oxidoreductase; Provisional
Probab=25.91 E-value=4.4e+02 Score=23.90 Aligned_cols=11 Identities=9% Similarity=-0.061 Sum_probs=9.3
Q ss_pred cEEEEECCCcH
Q 016179 241 TVISLLPGSRL 251 (394)
Q Consensus 241 ~~IlllgGSrg 251 (394)
++++++|||.+
T Consensus 3 k~vlItGas~g 13 (256)
T PRK12743 3 QVAIVTASDSG 13 (256)
T ss_pred CEEEEECCCch
Confidence 47899999987
No 340
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=25.75 E-value=2.8e+02 Score=20.50 Aligned_cols=59 Identities=12% Similarity=0.262 Sum_probs=31.2
Q ss_pred CcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEE
Q 016179 240 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSI 303 (394)
Q Consensus 240 ~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~ 303 (394)
.+.|++. |||.- ++ ...+..++..+.++.|+.. ++.+|.....+...++..++.+..+.
T Consensus 3 g~rVli~-GgR~~--~D-~~~i~~~Ld~~~~~~~~~~-lvhGga~~GaD~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 3 GMRVLIT-GGRDW--TD-HELIWAALDKVHARHPDMV-LVHGGAPKGADRIAARWARERGVPVI 61 (71)
T ss_pred CCEEEEE-ECCcc--cc-HHHHHHHHHHHHHhCCCEE-EEECCCCCCHHHHHHHHHHHCCCeeE
Confidence 4567776 56663 12 2345567777777777755 33333213455545555555444443
No 341
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=25.71 E-value=5.1e+02 Score=24.21 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=38.3
Q ss_pred HHHH-HHHHcCCCEEEEEcCChHHHHHHHhhccCCccchhhhhcCCCCcccccCC
Q 016179 329 TVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQ 382 (394)
Q Consensus 329 t~tl-Ea~a~G~P~Iv~y~~~~~~~~~a~~~vk~~~~~l~Nil~~~~i~pEliq~ 382 (394)
++++ +|.+-=+|-|+-...+..+.-|..-+..+|..+=|-.+-|.++=..|+.+
T Consensus 145 Amv~iDav~RllPGVlg~~~S~~~eSF~~gLLeyPqYTRP~~~~g~~VP~VLlSG 199 (244)
T PRK00026 145 AMVLIDAVVRLLPGVLGNEESAEEDSFSDGLLEYPHYTRPAEFRGMKVPEVLLSG 199 (244)
T ss_pred HHHHHHHHHHcCCCccCCccccccccccCCCCCCCCCCChHhhCCCCCcccccCC
Confidence 4555 99999999998666666665565567778888888888776654444443
No 342
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.45 E-value=2.4e+02 Score=27.11 Aligned_cols=19 Identities=5% Similarity=-0.157 Sum_probs=12.9
Q ss_pred chHHHHHHHcccceehhhH
Q 016179 311 NLKYDAFSASRVALCTSGT 329 (394)
Q Consensus 311 ~~~~~~~~~ADl~I~~SGt 329 (394)
.+..+..+.||++|+..|.
T Consensus 192 ~~l~~~~~~ADIvV~AvG~ 210 (285)
T PRK14191 192 KDLSFYTQNADIVCVGVGK 210 (285)
T ss_pred HHHHHHHHhCCEEEEecCC
Confidence 4566677777777776653
No 343
>PRK06114 short chain dehydrogenase; Provisional
Probab=25.34 E-value=5e+02 Score=23.49 Aligned_cols=12 Identities=8% Similarity=-0.122 Sum_probs=10.1
Q ss_pred CcEEEEECCCcH
Q 016179 240 ATVISLLPGSRL 251 (394)
Q Consensus 240 ~~~IlllgGSrg 251 (394)
.++++++|||+|
T Consensus 8 ~k~~lVtG~s~g 19 (254)
T PRK06114 8 GQVAFVTGAGSG 19 (254)
T ss_pred CCEEEEECCCch
Confidence 358999999998
No 344
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=24.68 E-value=2.3e+02 Score=26.75 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCEEEEeCCCCc-----hHHHHHHHHHhccccCCCCCeEEEeec
Q 016179 108 TIEAALLFRPHAVVTVDSKGF-----SFRLLKQLRARYSHERLNGPAHFHYVA 155 (394)
Q Consensus 108 ~~~~i~~~~PD~Vi~~~~~~f-----~~~la~~l~~~~~~~~~~ip~~~~yv~ 155 (394)
..+.++..+||.|-+|+.++- ++.+++.+++.. +++++.|..+
T Consensus 20 ~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~-----g~~~i~Hlt~ 67 (272)
T TIGR00676 20 TVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKET-----GIPTVPHLTC 67 (272)
T ss_pred HHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhc-----CCCeeEEeee
Confidence 445677889999998876553 556666666432 6787777643
No 345
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=24.62 E-value=6.9e+02 Score=24.72 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=51.6
Q ss_pred CCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHH
Q 016179 239 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFS 318 (394)
Q Consensus 239 ~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~ 318 (394)
+.+.|-+=..|-| |++...| .++.|.+..|+.++++.+..... .+..++.. ..+..+.+++......+..++.
T Consensus 49 ~~~~iW~Ha~s~G-e~~~~~~----l~~~l~~~~~~~~i~~t~~t~~~-~~~~~~~~-~~~~~~~~~P~d~~~~~~~~l~ 121 (425)
T PRK05749 49 KGPLIWFHAVSVG-ETRAAIP----LIRALRKRYPDLPILVTTMTPTG-SERAQALF-GDDVEHRYLPYDLPGAVRRFLR 121 (425)
T ss_pred CCCeEEEEeCCHH-HHHHHHH----HHHHHHHhCCCCcEEEeCCCccH-HHHHHHhc-CCCceEEEecCCcHHHHHHHHH
Confidence 3466888888888 6655444 44556666788887665532222 22222221 1122333443210112333333
Q ss_pred --Hcccceehhh---HHHH-HHHHcCCCEEEEE
Q 016179 319 --ASRVALCTSG---TVAV-ELQLARLPCVVAY 345 (394)
Q Consensus 319 --~ADl~I~~SG---t~tl-Ea~a~G~P~Iv~y 345 (394)
.-|++++..+ ...+ .+-..|+|++++.
T Consensus 122 ~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 122 FWRPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred hhCCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 2478776532 2233 6777899998864
No 346
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=24.60 E-value=6.4e+02 Score=24.27 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=62.9
Q ss_pred HHHHHhhhheeecCcccHH--HHHh-cCCCeEEE----cCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCCCCCCc
Q 016179 169 KNLAAFVDHILCILPNEEA--ICRL-NGLAATFV----GHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGAT 241 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~~--~~~~-~g~~~~~v----G~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl~~~~~ 241 (394)
+.+++++|.+.+-.+.... .+.+ .++|+.-- .||--- + .|--.+++++|- -+..
T Consensus 89 ~vls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQa-L-----------------~Dl~Ti~e~~g~-l~g~ 149 (304)
T TIGR00658 89 RVLSRYVDGIMARVYKHEDVEELAKYASVPVINGLTDLFHPCQA-L-----------------ADLLTIIEHFGK-LKGV 149 (304)
T ss_pred HHHHHhCCEEEEECCChHHHHHHHHhCCCCEEECCCCCCChHHH-H-----------------HHHHHHHHHhCC-CCCc
Confidence 4479999999988876533 3333 23443221 233100 0 111234455552 2345
Q ss_pred EEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcCh-HHHH---HHHhhcCCCCEEEecCCCcchHHHHH
Q 016179 242 VISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV-ENYI---TGLIQKWPVPSILVPGGSSNLKYDAF 317 (394)
Q Consensus 242 ~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~-~~~l---~~~~~~~~~~v~~~~g~~~~~~~~~~ 317 (394)
+|.++|.. ++....++.++..+ ++.+.+++.+.... .+.. ++...+.+..+.+. +++.+++
T Consensus 150 ~v~~vGd~-----~~v~~Sl~~~l~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~d~~~a~ 214 (304)
T TIGR00658 150 KVVYVGDG-----NNVCNSLMLAGAKL-----GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELT-----HDPVEAV 214 (304)
T ss_pred EEEEEeCC-----CchHHHHHHHHHHc-----CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEE-----cCHHHHh
Confidence 68888653 12233444454443 35655555332111 1122 22223344345433 4788999
Q ss_pred HHcccceehh
Q 016179 318 SASRVALCTS 327 (394)
Q Consensus 318 ~~ADl~I~~S 327 (394)
..||++.+.+
T Consensus 215 ~~aDvvy~~~ 224 (304)
T TIGR00658 215 KGADVIYTDV 224 (304)
T ss_pred CCCCEEEEcC
Confidence 9999999975
No 347
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=24.59 E-value=98 Score=29.49 Aligned_cols=26 Identities=8% Similarity=-0.051 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCC
Q 016179 100 KFRVRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 100 ~~~~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
.+..++.++.+.+++.+||+||.++.
T Consensus 32 ~~~~a~~~~~~~i~~~~PD~iVvi~~ 57 (277)
T cd07950 32 PIFDGYEPVKQWLAEQKPDVLFMVYN 57 (277)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 46778888999999999999999873
No 348
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=24.48 E-value=5.7e+02 Score=25.07 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=34.1
Q ss_pred hhcCCCCEEEecCCCcchHHHHHHH--ccccee-------------hhhHHHH--HHHHcCCCEEEEEcCChH
Q 016179 295 IQKWPVPSILVPGGSSNLKYDAFSA--SRVALC-------------TSGTVAV--ELQLARLPCVVAYRAHFL 350 (394)
Q Consensus 295 ~~~~~~~v~~~~g~~~~~~~~~~~~--ADl~I~-------------~SGt~tl--Ea~a~G~P~Iv~y~~~~~ 350 (394)
+.+.+.++.++.. +....+|+. .|.+|. +.||..+ =|-..|+|++++.+...+
T Consensus 192 L~~~GI~vtlI~D---sa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~ 261 (329)
T PRK06371 192 LAQEGIDHAIIAD---NAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTF 261 (329)
T ss_pred HHHCCCCEEEEcc---cHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEecccccc
Confidence 4455777877753 345566764 676665 4477665 556779999987664433
No 349
>PRK13373 putative dioxygenase; Provisional
Probab=24.43 E-value=92 Score=30.63 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeC
Q 016179 100 KFRVRLKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 100 ~~~~~~~~~~~~i~~~~PD~Vi~~~ 124 (394)
.+...+.++.+.+++.+||++|.++
T Consensus 30 ~v~~a~~~ir~~i~e~kPDVvVv~~ 54 (344)
T PRK13373 30 RLLQAADRLGRSLDAARPDVIIAFL 54 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 4677888999999999999999984
No 350
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=24.37 E-value=2.8e+02 Score=25.78 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=26.4
Q ss_pred CCcEEEEECCC-cHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCC
Q 016179 239 GATVISLLPGS-RLQEVARMLPIFAKTVELLKDSFPELITVIHVAP 283 (394)
Q Consensus 239 ~~~~IlllgGS-rg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~ 283 (394)
+..-+.++||+ +|++.-..-+.+.+.+++..++ ..+..-+.+++
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~-gkLIaaICaap 110 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAES-GKLIAAICAAP 110 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhc-CCeEEEeecch
Confidence 44568888999 8876433345566666665543 44555555553
No 351
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=24.36 E-value=1e+02 Score=29.35 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeC
Q 016179 99 YKFRVRLKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~PD~Vi~~~ 124 (394)
..+...+.++.+.+++.+||++|.++
T Consensus 31 ~~v~~a~~~~~~~v~~~~PDvvVvis 56 (278)
T PRK13364 31 KPFFDGFPPVREWLEKVKPDVAVVFY 56 (278)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 34677888999999999999999986
No 352
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=24.34 E-value=6.7e+02 Score=24.41 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=18.8
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcC
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLA 58 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~ 58 (394)
.|++|++++..-..++..+.+.|.+.+
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g 51 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAG 51 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC
Confidence 578888887655556666777776643
No 353
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=23.93 E-value=5.7e+02 Score=24.95 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhhCCCeEEEEEeCC-------CcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHH
Q 016179 259 PIFAKTVELLKDSFPELITVIHVAP-------NRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVA 331 (394)
Q Consensus 259 ~~ll~a~~~l~~~~~~~~~vi~~g~-------~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~t 331 (394)
..|-|.++.|. |+=+++++.-. ....+ .+++..+.++ ...++.+ .+--.++=+.||+++|.|-++-
T Consensus 79 ~FMaETAkiLn---PeK~VL~Pd~~AgCsmA~~~~~~-~~~~~~~~~P-~~~vV~Y--vNtsA~vKA~~Di~cTSsNAvk 151 (324)
T COG0379 79 HFMAETAKILN---PEKTVLLPDLEAGCSMADMITAE-EVRAFKEKHP-DAPVVTY--VNTSAEVKAEADICCTSSNAVK 151 (324)
T ss_pred eehHhhHhhcC---CCCeEecCCCCCCCCcccCCCHH-HHHHHHHHCC-CCceEEE--eeChHHHHhhcCeEEecchHHH
Confidence 35777777664 66666665421 11122 2333333444 3333333 3455677778899999998887
Q ss_pred H-HHHHcCCCEEEEEcCChHHHHHHHhh
Q 016179 332 V-ELQLARLPCVVAYRAHFLTEWFIRYK 358 (394)
Q Consensus 332 l-Ea~a~G~P~Iv~y~~~~~~~~~a~~~ 358 (394)
+ |-+ .+..-|+.-+-..+..++++..
T Consensus 152 vVe~~-~~~~~Iif~PD~~Lg~yva~~t 178 (324)
T COG0379 152 VVESA-LDGDKILFLPDKNLGRYVAKQT 178 (324)
T ss_pred HHHhc-cCCCcEEEcCcHHHHHHHHHHc
Confidence 7 888 5545455556666666776643
No 354
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=23.73 E-value=1.1e+02 Score=31.13 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 016179 98 IYKFRVRLKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~PD~Vi~~~ 124 (394)
...+...+.++.+.+++.+||+||.++
T Consensus 177 ~~~v~~~~~~~r~~l~~~~PDVvVi~~ 203 (444)
T PRK13372 177 WKKLFAGYDLSREWAKEHLPDVIILVY 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 446778899999999999999999984
No 355
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=23.72 E-value=1.1e+02 Score=29.25 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeC
Q 016179 100 KFRVRLKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 100 ~~~~~~~~~~~~i~~~~PD~Vi~~~ 124 (394)
.+..++.++.+.+++.+||+||.++
T Consensus 32 ~~~~a~~~~~~~~~~~~pD~vVvi~ 56 (277)
T cd07364 32 PLFKGYQPARDWIKKNKPDVAIIVY 56 (277)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 4677888999999999999999974
No 356
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=23.50 E-value=7.1e+02 Score=24.40 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=19.3
Q ss_pred hcCCCCEEEecCCCcchHHHHHHHcccceehh
Q 016179 296 QKWPVPSILVPGGSSNLKYDAFSASRVALCTS 327 (394)
Q Consensus 296 ~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S 327 (394)
+..+.++.+. +++.+++..||++.+..
T Consensus 226 ~~~g~~~~~~-----~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 226 AESGGSLTVS-----HDIDSAYAGADVVYAKS 252 (335)
T ss_pred HHcCCeEEEE-----cCHHHHhCCCCEEEece
Confidence 3444455543 47899999999999965
No 357
>PRK06756 flavodoxin; Provisional
Probab=23.40 E-value=1.3e+02 Score=25.26 Aligned_cols=27 Identities=7% Similarity=0.337 Sum_probs=20.8
Q ss_pred ceEEEEeCCchHHHH--HHHHHHHHHhcC
Q 016179 32 LRVFIVAGEVSGDSI--GSRLMSAMKKLA 58 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~--a~~l~~~L~~~~ 58 (394)
|||+|+-++..|+.. |-+|++.+++.+
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g 30 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETE 30 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcC
Confidence 689888888888777 666888887643
No 358
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.33 E-value=4.9e+02 Score=23.25 Aligned_cols=11 Identities=27% Similarity=0.075 Sum_probs=9.1
Q ss_pred cEEEEECCCcH
Q 016179 241 TVISLLPGSRL 251 (394)
Q Consensus 241 ~~IlllgGSrg 251 (394)
.+++++||+.+
T Consensus 5 ~~vlItGa~g~ 15 (250)
T PRK08063 5 KVALVTGSSRG 15 (250)
T ss_pred CEEEEeCCCch
Confidence 47999999877
No 359
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=23.31 E-value=1.3e+02 Score=28.81 Aligned_cols=27 Identities=7% Similarity=-0.128 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 016179 98 IYKFRVRLKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~PD~Vi~~~ 124 (394)
...+..++.++.+.+++.+||+||.++
T Consensus 30 ~~~~~~a~~~i~~~i~~~~PDvvVii~ 56 (284)
T PRK13366 30 WQPVFKGYEFSKQWEKEEKPDVIFLVY 56 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 345778889999999999999999873
No 360
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=23.15 E-value=4.9e+02 Score=23.26 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=9.1
Q ss_pred cEEEEECCCcH
Q 016179 241 TVISLLPGSRL 251 (394)
Q Consensus 241 ~~IlllgGSrg 251 (394)
++++++|||.+
T Consensus 3 k~ilItGas~g 13 (248)
T PRK06947 3 KVVLITGASRG 13 (248)
T ss_pred cEEEEeCCCCc
Confidence 47899999887
No 361
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=22.80 E-value=7.3e+02 Score=24.33 Aligned_cols=127 Identities=12% Similarity=-0.007 Sum_probs=63.4
Q ss_pred HHHHHhhhheeecCcccHH--HHHhc-CCCeEE----EcCCCchhhhhhcCCCCCCCcccccCCChHHHHhhcCC-CCCC
Q 016179 169 KNLAAFVDHILCILPNEEA--ICRLN-GLAATF----VGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSV-PSGA 240 (394)
Q Consensus 169 ~~l~~~~d~v~~~~p~~~~--~~~~~-g~~~~~----vG~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lgl-~~~~ 240 (394)
+.+++++|.+.+-.+.... .+.++ ++|+.- ..||--- + .|--.+++++|- +-+.
T Consensus 95 rvls~y~D~Iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQa-L-----------------aDl~Ti~e~~g~~~l~g 156 (336)
T PRK03515 95 RVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQL-L-----------------ADLLTMQEHLPGKAFNE 156 (336)
T ss_pred HHHHHhCcEEEEEeCChHHHHHHHHhCCCCEEECCCCCCChHHH-H-----------------HHHHHHHHHhCCCCcCC
Confidence 4579999998888765432 33332 344321 1234100 0 111234455541 2234
Q ss_pred cEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcCh-HHHH---HHHhhcCCCCEEEecCCCcchHHHH
Q 016179 241 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV-ENYI---TGLIQKWPVPSILVPGGSSNLKYDA 316 (394)
Q Consensus 241 ~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~-~~~l---~~~~~~~~~~v~~~~g~~~~~~~~~ 316 (394)
.+|+++|-.+-. ....++.++..+ ++.+.+++.+.... .+.+ ++..++.+.++.+. +++.++
T Consensus 157 ~~ia~vGD~~~~----v~~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~-----~d~~ea 222 (336)
T PRK03515 157 MTLAYAGDARNN----MGNSLLEAAALT-----GLDLRLVAPKACWPEAALVTECRALAQKNGGNITLT-----EDIAEG 222 (336)
T ss_pred CEEEEeCCCcCc----HHHHHHHHHHHc-----CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEE-----cCHHHH
Confidence 678888753211 122344444433 46666655432111 1122 22233344445443 478899
Q ss_pred HHHcccceehh
Q 016179 317 FSASRVALCTS 327 (394)
Q Consensus 317 ~~~ADl~I~~S 327 (394)
+..||++.+.+
T Consensus 223 ~~~aDvvytd~ 233 (336)
T PRK03515 223 VKGADFIYTDV 233 (336)
T ss_pred hCCCCEEEecC
Confidence 99999999963
No 362
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=22.75 E-value=6e+02 Score=23.32 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=17.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeE
Q 016179 116 RPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAH 150 (394)
Q Consensus 116 ~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~ 150 (394)
.||+||.+|- .-...+...+.+. +||++
T Consensus 155 ~Pd~vii~d~-~~~~~ai~Ea~~l------~IP~I 182 (225)
T TIGR01011 155 LPDLLFVIDP-VKEKIAVAEARKL------GIPVV 182 (225)
T ss_pred CCCEEEEeCC-CccHHHHHHHHHc------CCCEE
Confidence 6999999973 2333333444443 79963
No 363
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=22.56 E-value=1.2e+02 Score=30.73 Aligned_cols=26 Identities=4% Similarity=-0.150 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeC
Q 016179 99 YKFRVRLKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~PD~Vi~~~ 124 (394)
..+..++..+.+.+++.+||+||.++
T Consensus 31 ~~v~~~~~~~r~~l~~~~PDvvVv~~ 56 (420)
T PRK13367 31 APIFESFAPLRRWLEEKKPDVLLYIF 56 (420)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 35778888999999999999999984
No 364
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=22.50 E-value=2.1e+02 Score=25.51 Aligned_cols=31 Identities=3% Similarity=0.066 Sum_probs=20.8
Q ss_pred HhhcCCCCEEEecCCCcchHHHHHHHcccceehh
Q 016179 294 LIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS 327 (394)
Q Consensus 294 ~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~S 327 (394)
+.++.+.++++.. ..|..+++..||++|+.-
T Consensus 51 ~~~~~~~~~~v~~---ttd~~eAl~gADfVi~~i 81 (183)
T PF02056_consen 51 MVEEAGADLKVEA---TTDRREALEGADFVINQI 81 (183)
T ss_dssp HHHHCTTSSEEEE---ESSHHHHHTTESEEEE--
T ss_pred HHHhcCCCeEEEE---eCCHHHHhCCCCEEEEEe
Confidence 3445555555543 458899999999999955
No 365
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=22.25 E-value=4.9e+02 Score=22.06 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEecC-hhhHh--------ccCccccccCcceeccHHHhhhhHHHHHHHHHHHHHHHHh
Q 016179 44 DSIGSRLMSAMKKLAPLPVSFSGVGG-SMMSE--------QGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALL 114 (394)
Q Consensus 44 h~~a~~l~~~L~~~~~~~~~~~g~gg-~~m~~--------~g~~~~~~~~~l~~~G~~~~l~~~~~~~~~~~~~~~~i~~ 114 (394)
+..+...+++|++.....+..+.+|+ +..++ .|.+..+....-....+ .+ .....-+.+++++
T Consensus 17 ~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~------~~--~~~a~~l~~~~~~ 88 (164)
T PF01012_consen 17 SLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEY------DP--EAYADALAELIKE 88 (164)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-------H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCcccccc------CH--HHHHHHHHHHHHh
Confidence 44477788888875432366666664 33322 34443322111000011 00 1112234566777
Q ss_pred cCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCeEEE
Q 016179 115 FRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPAHFH 152 (394)
Q Consensus 115 ~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~~~~ 152 (394)
.+||+|++-+. .+--.++.++..+. +.|.+.+
T Consensus 89 ~~~~lVl~~~t-~~g~~la~~lA~~L-----~~~~v~~ 120 (164)
T PF01012_consen 89 EGPDLVLFGST-SFGRDLAPRLAARL-----GAPLVTD 120 (164)
T ss_dssp HT-SEEEEESS-HHHHHHHHHHHHHH-----T-EEEEE
T ss_pred cCCCEEEEcCc-CCCCcHHHHHHHHh-----CCCccce
Confidence 99998887543 22233444444331 5675443
No 366
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=22.23 E-value=1.1e+02 Score=29.07 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCC
Q 016179 100 KFRVRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 100 ~~~~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
.+..++.++.+.+++.+||+||.++.
T Consensus 32 ~~~~a~~~~~~~v~~~~PD~iVvis~ 57 (276)
T cd07949 32 PFFDGFPPVHDWLEKAKPDVAVVFYN 57 (276)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 46678889999999999999999863
No 367
>PRK07589 ornithine cyclodeaminase; Validated
Probab=22.23 E-value=5.1e+02 Score=25.55 Aligned_cols=77 Identities=5% Similarity=-0.003 Sum_probs=39.6
Q ss_pred CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHH
Q 016179 238 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF 317 (394)
Q Consensus 238 ~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 317 (394)
++..+++++|-+.-+. .++ +++..+. +++=+.+.+.+.+..+.+.+.+++.+.++... ++..++.
T Consensus 127 ~da~~l~iiGaG~QA~--~~l----~a~~~vr----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~-----~~~~~av 191 (346)
T PRK07589 127 PDSRTMALIGNGAQSE--FQA----LAFKALL----GIEEIRLYDIDPAATAKLARNLAGPGLRIVAC-----RSVAEAV 191 (346)
T ss_pred CCCcEEEEECCcHHHH--HHH----HHHHHhC----CceEEEEEeCCHHHHHHHHHHHHhcCCcEEEe-----CCHHHHH
Confidence 4667788886443322 222 2333332 23334444544332222222233323344433 4688999
Q ss_pred HHcccceehhhH
Q 016179 318 SASRVALCTSGT 329 (394)
Q Consensus 318 ~~ADl~I~~SGt 329 (394)
+.||+++|...+
T Consensus 192 ~~ADIIvtaT~S 203 (346)
T PRK07589 192 EGADIITTVTAD 203 (346)
T ss_pred hcCCEEEEecCC
Confidence 999999997753
No 368
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.10 E-value=3.5e+02 Score=23.12 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=32.7
Q ss_pred eEEEEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecCh-------hhHhccCccccc
Q 016179 33 RVFIVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGS-------MMSEQGMKSLFP 82 (394)
Q Consensus 33 kIlI~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~-------~m~~~g~~~~~~ 82 (394)
.++.+++-.+||.. ...+.++|++.+.+++. +..||. .+++.|+...|.
T Consensus 65 ~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~-v~~GGvip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 65 DVIGVSSLDGGHLTLVPGLVEALREAGVEDIL-VVVGGVIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred CEEEEEeccchHHHHHHHHHHHHHHhCCcceE-EeecCccCchhHHHHHHhCcceeeC
Confidence 45666777778888 88899999998865343 455552 255667655433
No 369
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=22.08 E-value=1.7e+02 Score=28.99 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhCCCeEEEEEeCC-CcChHHHHHHHhhcCCC-----CEEEec-CCCcchH-HHHHHHcccceehhhHHHH
Q 016179 261 FAKTVELLKDSFPELITVIHVAP-NRHVENYITGLIQKWPV-----PSILVP-GGSSNLK-YDAFSASRVALCTSGTVAV 332 (394)
Q Consensus 261 ll~a~~~l~~~~~~~~~vi~~g~-~~~~~~~l~~~~~~~~~-----~v~~~~-g~~~~~~-~~~~~~ADl~I~~SGt~tl 332 (394)
+..|++.+.+++|+...++-+|. |..-++.+.......+. ++.++. -. +.-+ ..-+....+.=-.=|.+.+
T Consensus 63 LW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~-R~lVea~~~~hfTllgQaigsmIl 141 (465)
T KOG1387|consen 63 LWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKL-RYLVEASTWKHFTLLGQAIGSMIL 141 (465)
T ss_pred hhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEe-eeeeecccccceehHHHHHHHHHH
Confidence 55677777888999888887776 33333333322111111 232221 00 0000 0112222222222366664
Q ss_pred --HHHHcCCCEEEEEcCC-hHHHHHHHhhccC
Q 016179 333 --ELQLARLPCVVAYRAH-FLTEWFIRYKAKI 361 (394)
Q Consensus 333 --Ea~a~G~P~Iv~y~~~-~~~~~~a~~~vk~ 361 (394)
||..-=.|-|.++-++ +++|-+.+++.++
T Consensus 142 ~~Eai~r~~Pdi~IDtMGY~fs~p~~r~l~~~ 173 (465)
T KOG1387|consen 142 AFEAIIRFPPDIFIDTMGYPFSYPIFRRLRRI 173 (465)
T ss_pred HHHHHHhCCchheEecCCCcchhHHHHHHccC
Confidence 9999999999988776 7888887766554
No 370
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.91 E-value=1.6e+02 Score=27.51 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=22.4
Q ss_pred HHHHHhcCCCEEEEeC-CCCchHHHHHH--HHHhccccCCCCCeEE
Q 016179 109 IEAALLFRPHAVVTVD-SKGFSFRLLKQ--LRARYSHERLNGPAHF 151 (394)
Q Consensus 109 ~~~i~~~~PD~Vi~~~-~~~f~~~la~~--l~~~~~~~~~~ip~~~ 151 (394)
...+++++||.+|.+. .+..|.+-.++ |+.. ++|+++
T Consensus 53 ~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~------~iP~Iv 92 (277)
T PRK00994 53 KKMLEEWKPDFVIVISPNPAAPGPKKAREILKAA------GIPCIV 92 (277)
T ss_pred HHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhc------CCCEEE
Confidence 3556789999999885 34445443322 2222 789644
No 371
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=21.82 E-value=7.1e+02 Score=23.79 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=23.9
Q ss_pred EEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchH-HHHHHHcccceehhhHHH
Q 016179 278 VIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLK-YDAFSASRVALCTSGTVA 331 (394)
Q Consensus 278 vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~-~~~~~~ADl~I~~SGt~t 331 (394)
++++|.+..--..|-+..++.+.+..++.. .+|+ ++++..++-+=..||++|
T Consensus 214 iVIGg~~SsNT~kL~eia~~~~~~t~~Ie~--~~el~~~~l~~~~~VGItaGAST 266 (281)
T PF02401_consen 214 IVIGGKNSSNTRKLAEIAKEHGKPTYHIET--ADELDPEWLKGVKKVGITAGAST 266 (281)
T ss_dssp EEES-TT-HHHHHHHHHHHHCTTCEEEESS--GGG--HHHHTT-SEEEEEE-TTS
T ss_pred EEecCCCCccHHHHHHHHHHhCCCEEEeCC--ccccCHhHhCCCCEEEEEccCCC
Confidence 444444322222344444444444444433 3444 477787776666677766
No 372
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=21.72 E-value=1.8e+02 Score=25.27 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeC
Q 016179 99 YKFRVRLKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~PD~Vi~~~ 124 (394)
.++.....++.++|++++||.++.=+
T Consensus 44 ~Rl~~I~~~l~~~i~~~~Pd~vaiE~ 69 (164)
T PRK00039 44 ERLKQIYDGLSELIDEYQPDEVAIEE 69 (164)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeh
Confidence 34556667888999999999887544
No 373
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=21.71 E-value=5.5e+02 Score=22.89 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=9.6
Q ss_pred cEEEEECCCcH
Q 016179 241 TVISLLPGSRL 251 (394)
Q Consensus 241 ~~IlllgGSrg 251 (394)
++++++|||.+
T Consensus 7 ~~~lItG~s~~ 17 (247)
T PRK12935 7 KVAIVTGGAKG 17 (247)
T ss_pred CEEEEECCCCH
Confidence 58999999987
No 374
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=21.67 E-value=86 Score=31.03 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=34.5
Q ss_pred EEeCCchHHHH-HHHHHHHHHhcCCCCeEEEEecChhhHhccCccccccCcceeccH----HHhhhhHHHHHHHHHHHHH
Q 016179 36 IVAGEVSGDSI-GSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGI----WELLPHIYKFRVRLKETIE 110 (394)
Q Consensus 36 I~aG~~sGh~~-a~~l~~~L~~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~~~G~----~~~l~~~~~~~~~~~~~~~ 110 (394)
|.++|+||+.+ +..+++...+.+.. ++++.. +.+....+-. + ...+|= .|.+..-..+.+.++.+.+
T Consensus 15 iLG~GGGG~p~~~~~~~~~~l~~~~~-v~lv~~--del~dd~~v~--~---v~~~GsP~v~~E~lp~g~e~~~a~~~le~ 86 (353)
T PF06032_consen 15 ILGSGGGGDPYIGRLMAEQALREGGP-VRLVDP--DELPDDDLVV--P---VGMMGSPTVSVEKLPSGDEALRAVEALEK 86 (353)
T ss_dssp HTTTT-SS-HHHHHHHHTT-SBTTS--EEEE-G--GG--SSE-EE--E---EEEEE-HHHTT-SS-HHHHHHHHHHHHHH
T ss_pred EEEEcCCccHHHHHHHHHHHHhCCCC-eEEEEH--hHcCCCCcEe--E---EEEeCCChHHhccCCCchHHHHHHHHHHH
Confidence 44677888998 77766655444432 666655 3343221110 0 112221 2344333344555555555
Q ss_pred HHHhcCCCEEEEeC
Q 016179 111 AALLFRPHAVVTVD 124 (394)
Q Consensus 111 ~i~~~~PD~Vi~~~ 124 (394)
... .+++.|+.+-
T Consensus 87 ~~g-~~~~av~~~E 99 (353)
T PF06032_consen 87 YLG-RKIDAVIPIE 99 (353)
T ss_dssp HTT---EEEEE-SS
T ss_pred hhC-CCccEEeehh
Confidence 443 3599999873
No 375
>PRK07206 hypothetical protein; Provisional
Probab=21.63 E-value=4.2e+02 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCchHHHHHHHHHh
Q 016179 106 KETIEAALLFRPHAVVTVDSKGFSFRLLKQLRAR 139 (394)
Q Consensus 106 ~~~~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~ 139 (394)
..+.+.++++++|.|+.. + ...+.+++.+.+.
T Consensus 60 ~~l~~~~~~~~~d~vi~~-~-e~~~~~~a~l~~~ 91 (416)
T PRK07206 60 DDLVEFLRKLGPEAIIAG-A-ESGVELADRLAEI 91 (416)
T ss_pred HHHHHHHHHcCCCEEEEC-C-CccHHHHHHHHHh
Confidence 345667888999999964 3 3455566666544
No 376
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=21.51 E-value=9e+02 Score=26.71 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCC
Q 016179 103 VRLKETIEAALLFRPHAVVTVDS 125 (394)
Q Consensus 103 ~~~~~~~~~i~~~~PD~Vi~~~~ 125 (394)
..+.++.+.+++++.|.++.+|.
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGG 487 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGG 487 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECC
Confidence 35678889999999999999973
No 377
>PLN02757 sirohydrochlorine ferrochelatase
Probab=21.37 E-value=5.3e+02 Score=22.13 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=33.0
Q ss_pred CCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCC--CeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecC
Q 016179 238 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFP--ELITVIHVAPNRHVENYITGLIQKWPVPSILVPG 307 (394)
Q Consensus 238 ~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~--~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g 307 (394)
....+|++-=|||..+.+.. +.+.++.+.++.+ .+..-+..-..+.+.+.+++....-..++.+++.
T Consensus 12 ~~~~lllvgHGSrd~~a~~~---~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~ 80 (154)
T PLN02757 12 DKDGVVIVDHGSRRKESNLM---LEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPF 80 (154)
T ss_pred CCcEEEEEeCCCCCHHHHHH---HHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEh
Confidence 33456666668887665543 4444455544322 2333333322345667676654432224555554
No 378
>PRK13660 hypothetical protein; Provisional
Probab=21.29 E-value=1.7e+02 Score=26.13 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=27.0
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEe
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGV 67 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~ 67 (394)
..-+|++|--|-|+-|+.++-+||+..|+ +++..+
T Consensus 43 ~~wfi~ggalG~d~wAaEvvl~LK~~yp~-lkL~~~ 77 (182)
T PRK13660 43 LEWVIISGQLGVELWAAEVVLELKEEYPD-LKLAVI 77 (182)
T ss_pred CCEEEECCcchHHHHHHHHHHHHHhhCCC-eEEEEE
Confidence 34566666677799999999999998885 776554
No 379
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.94 E-value=1.8e+02 Score=25.19 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=21.0
Q ss_pred HHHHHhcCCCEEEEeCCCCchHHHHHHHHHhccccCCCCCe
Q 016179 109 IEAALLFRPHAVVTVDSKGFSFRLLKQLRARYSHERLNGPA 149 (394)
Q Consensus 109 ~~~i~~~~PD~Vi~~~~~~f~~~la~~l~~~~~~~~~~ip~ 149 (394)
.+.+.+.+||+|++..+. .+-.+...|.+. +||+
T Consensus 62 ~E~ll~l~PDlii~~~~~-~~~~~~~~l~~~------gIpv 95 (186)
T cd01141 62 VELIVALKPDLVILYGGF-QAQTILDKLEQL------GIPV 95 (186)
T ss_pred HHHHhccCCCEEEEecCC-CchhHHHHHHHc------CCCE
Confidence 456667899999975431 222255556544 7895
No 380
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=20.86 E-value=1.8e+02 Score=30.03 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=36.2
Q ss_pred CEEEecCCCcchHHHHHHHcccceehhhHHHHHHHHcCCCEEEEEcCChHH
Q 016179 301 PSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLT 351 (394)
Q Consensus 301 ~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~tlEa~a~G~P~Iv~y~~~~~~ 351 (394)
+++++..- -+--.+++.-|=|-|....+-.||+.||+|++ +|-++|..
T Consensus 209 r~~ll~ed--fnpisll~~~dkvy~~ts~mgfeall~~~~~~-~fg~p~ya 256 (671)
T COG3563 209 RVHLLAED--FNPISLLQNVDKVYCVTSQMGFEALLCGKPLT-TFGLPWYA 256 (671)
T ss_pred eEEEeccc--CChHHHHHhcceeEEeeccccHHHHhcCCcee-eecchhhc
Confidence 57776431 24557899999998887777789999999977 57776643
No 381
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=20.79 E-value=5.3e+02 Score=23.24 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCC---CEEEecCCCcchHHHHHHHcccceehh-h---
Q 016179 256 RMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV---PSILVPGGSSNLKYDAFSASRVALCTS-G--- 328 (394)
Q Consensus 256 ~~l~~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~---~v~~~~g~~~~~~~~~~~~ADl~I~~S-G--- 328 (394)
+.+..+.+|+.-+..-. +-.+++++.. ......+++.....+. .-++++|...+-...-+..=|++|... .
T Consensus 44 kT~~~L~~A~~~i~~i~-~~~ILfVgtk-~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~ 121 (196)
T TIGR01012 44 KTDERLRVAAKFLVRIE-PEDILVVSAR-IYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADH 121 (196)
T ss_pred HHHHHHHHHHHHHHHhh-CCeEEEEecC-HHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcccc
Confidence 33444555555444333 3456666654 2333334444333221 224555532222222234445555533 1
Q ss_pred HHHHHHHHcCCCEEEEEc
Q 016179 329 TVAVELQLARLPCVVAYR 346 (394)
Q Consensus 329 t~tlEa~a~G~P~Iv~y~ 346 (394)
.+.-||..+|+|+|-+-.
T Consensus 122 ~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 122 QALKEASEVGIPIVALCD 139 (196)
T ss_pred HHHHHHHHcCCCEEEEee
Confidence 233499999999996543
No 382
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.59 E-value=2.9e+02 Score=25.65 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=24.1
Q ss_pred cCCCceEEEEeCCchHHHHHHHHHHHHHhcCCCCeEEEEecC
Q 016179 28 KDGELRVFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGG 69 (394)
Q Consensus 28 ~~~~~kIlI~aG~~sGh~~a~~l~~~L~~~~~~~~~~~g~gg 69 (394)
++.+++|+|++++.||= +.++++++.+. + +.++....
T Consensus 4 ~~~~k~VlItgcs~GGI--G~ala~ef~~~--G-~~V~AtaR 40 (289)
T KOG1209|consen 4 QSQPKKVLITGCSSGGI--GYALAKEFARN--G-YLVYATAR 40 (289)
T ss_pred ccCCCeEEEeecCCcch--hHHHHHHHHhC--C-eEEEEEcc
Confidence 45677899988887762 34566666654 2 66776653
No 383
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=20.42 E-value=2.5e+02 Score=25.27 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=22.1
Q ss_pred HHHHHHHHHHH--hcCCCEEEEeC-CCCchHHHHHHHH
Q 016179 103 VRLKETIEAAL--LFRPHAVVTVD-SKGFSFRLLKQLR 137 (394)
Q Consensus 103 ~~~~~~~~~i~--~~~PD~Vi~~~-~~~f~~~la~~l~ 137 (394)
+..+++.+-|+ .++||++|++. +..+++++.+...
T Consensus 14 ~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L 51 (192)
T COG2236 14 RLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFL 51 (192)
T ss_pred HHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHh
Confidence 33444444453 58999999996 3335777766543
No 384
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=20.37 E-value=2.9e+02 Score=23.51 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCC
Q 016179 104 RLKETIEAALLFRPHAVVTVDSK 126 (394)
Q Consensus 104 ~~~~~~~~i~~~~PD~Vi~~~~~ 126 (394)
.+.++.+++++++|+.||. |.|
T Consensus 41 ~~~~l~~li~~~~~~~vVV-GlP 62 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVV-GLP 62 (141)
T ss_pred hHHHHHHHHHHhCCCEEEE-ecC
Confidence 4667888999999998874 554
No 385
>PRK06172 short chain dehydrogenase; Provisional
Probab=20.30 E-value=5e+02 Score=23.34 Aligned_cols=11 Identities=18% Similarity=0.069 Sum_probs=9.5
Q ss_pred cEEEEECCCcH
Q 016179 241 TVISLLPGSRL 251 (394)
Q Consensus 241 ~~IlllgGSrg 251 (394)
++++++|||.+
T Consensus 8 k~ilItGas~~ 18 (253)
T PRK06172 8 KVALVTGGAAG 18 (253)
T ss_pred CEEEEeCCCch
Confidence 58999999887
No 386
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=20.16 E-value=1.9e+02 Score=25.85 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=20.6
Q ss_pred ceEEEEeCCchHHHHHHHHHHHHHhc
Q 016179 32 LRVFIVAGEVSGDSIGSRLMSAMKKL 57 (394)
Q Consensus 32 ~kIlI~aG~~sGh~~a~~l~~~L~~~ 57 (394)
+||++...|.+|-.++..+++.|++.
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~ 27 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDV 27 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhh
Confidence 57877666677777799999999874
No 387
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=20.16 E-value=1.7e+02 Score=27.87 Aligned_cols=27 Identities=11% Similarity=-0.055 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 016179 98 IYKFRVRLKETIEAALLFRPHAVVTVD 124 (394)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~PD~Vi~~~ 124 (394)
......++.++.+.+++.+||++|.++
T Consensus 28 ~~~~~~a~~~~~~~v~~~~pD~ivvi~ 54 (277)
T cd07368 28 REICWHAYAICAERLAALQVTSVVVIG 54 (277)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 345678899999999999999999984
No 388
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.05 E-value=4.7e+02 Score=23.68 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhhCCCeEEEEEeCCCcChHHHHHHHhhcCCCCEEEecCCCcchHHHHHHHcccceehhhHHH----HHHH
Q 016179 260 IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVA----VELQ 335 (394)
Q Consensus 260 ~ll~a~~~l~~~~~~~~~vi~~g~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ADl~I~~SGt~t----lEa~ 335 (394)
.-+++++.+.+++|+ +++-.| ..-..+..+... +.+-+..+-+++ .+++.++-...++.... |..| .+|.
T Consensus 45 ~a~~~i~~l~~~~~~--~~vGAG-TVl~~~~a~~a~-~aGA~FivsP~~-~~~v~~~~~~~~i~~iP-G~~TptEi~~A~ 118 (204)
T TIGR01182 45 VALDAIRLLRKEVPD--ALIGAG-TVLNPEQLRQAV-DAGAQFIVSPGL-TPELAKHAQDHGIPIIP-GVATPSEIMLAL 118 (204)
T ss_pred cHHHHHHHHHHHCCC--CEEEEE-eCCCHHHHHHHH-HcCCCEEECCCC-CHHHHHHHHHcCCcEEC-CCCCHHHHHHHH
Confidence 344566677767775 233333 222123343333 334455555665 56777777777776554 7555 2667
Q ss_pred HcCCCEEEEEcCChH
Q 016179 336 LARLPCVVAYRAHFL 350 (394)
Q Consensus 336 a~G~P~Iv~y~~~~~ 350 (394)
.+|..+|=+++.+.+
T Consensus 119 ~~Ga~~vKlFPA~~~ 133 (204)
T TIGR01182 119 ELGITALKLFPAEVS 133 (204)
T ss_pred HCCCCEEEECCchhc
Confidence 789999877887644
No 389
>PF13941 MutL: MutL protein
Probab=20.03 E-value=3.1e+02 Score=28.23 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=31.1
Q ss_pred cCCCCCCcEEEEECCCcHHHHHhhHHHHHHHHHHhhhhCCCeEE-EEEeCCCcChHHHHHHHhhc
Q 016179 234 YSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELIT-VIHVAPNRHVENYITGLIQK 297 (394)
Q Consensus 234 lgl~~~~~~IlllgGSrg~ei~~~l~~ll~a~~~l~~~~~~~~~-vi~~g~~~~~~~~l~~~~~~ 297 (394)
..+++| +||+.||--|.+-. .+++.++.|.+. ++++ |+.+| |....+.+++.+.+
T Consensus 121 ~~~~PD--iILLaGGtDgG~~~----~il~nA~~La~~--~~~~pVIyAG-N~~a~~~v~~il~~ 176 (457)
T PF13941_consen 121 REIRPD--IILLAGGTDGGNKE----VILHNAEMLAEA--NLRIPVIYAG-NKAAQDEVEEILEK 176 (457)
T ss_pred hccCCC--EEEEeCCccCCchH----HHHHHHHHHHhC--CCCCcEEEEC-CHHHHHHHHHHHHh
Confidence 345554 78888888775422 344455555543 3333 44444 55666667776664
Done!