Query 016180
Match_columns 394
No_of_seqs 205 out of 1856
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:31:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.3E-69 2.7E-74 536.3 41.3 376 14-394 10-431 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 1.5E-55 3.3E-60 438.2 34.2 289 79-393 109-450 (482)
3 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.1E-52 2.5E-57 403.3 30.3 294 89-392 2-326 (326)
4 cd05478 pepsin_A Pepsin A, asp 100.0 1.9E-52 4.2E-57 400.4 29.6 275 84-388 4-317 (317)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 2.6E-52 5.7E-57 400.9 29.6 275 86-388 2-325 (325)
6 cd06098 phytepsin Phytepsin, a 100.0 3.2E-52 7E-57 398.7 29.4 273 84-388 4-317 (317)
7 cd05486 Cathespin_E Cathepsin 100.0 3.2E-52 7E-57 398.7 27.4 269 91-388 1-316 (316)
8 KOG1339 Aspartyl protease [Pos 100.0 1.8E-51 4E-56 404.5 32.8 305 83-392 39-397 (398)
9 cd05477 gastricsin Gastricsins 100.0 8.3E-51 1.8E-55 389.4 29.6 272 88-389 1-318 (318)
10 cd05488 Proteinase_A_fungi Fun 100.0 1E-50 2.3E-55 388.8 29.1 273 85-388 5-320 (320)
11 cd05487 renin_like Renin stimu 100.0 1.4E-50 3E-55 389.0 29.6 275 85-389 3-326 (326)
12 cd05485 Cathepsin_D_like Cathe 100.0 1.3E-50 2.9E-55 389.4 29.2 277 83-388 4-329 (329)
13 PTZ00147 plasmepsin-1; Provisi 100.0 5.8E-50 1.3E-54 395.4 33.2 273 81-390 130-450 (453)
14 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.3E-49 5E-54 390.4 32.5 279 80-390 128-449 (450)
15 cd05472 cnd41_like Chloroplast 100.0 5.3E-49 1.1E-53 373.8 29.6 253 90-391 1-299 (299)
16 cd05475 nucellin_like Nucellin 100.0 1.1E-48 2.4E-53 366.5 29.7 257 89-391 1-273 (273)
17 cd05489 xylanase_inhibitor_I_l 100.0 4E-47 8.7E-52 368.1 28.9 277 97-389 2-361 (362)
18 cd05473 beta_secretase_like Be 100.0 3E-47 6.5E-52 371.2 27.7 274 89-394 2-350 (364)
19 cd05476 pepsin_A_like_plant Ch 100.0 1.7E-46 3.7E-51 350.4 29.4 244 90-391 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 7.6E-46 1.7E-50 348.4 25.1 242 91-388 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 4.5E-45 9.8E-50 349.3 20.0 272 90-389 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 7.5E-43 1.6E-47 330.9 25.9 237 90-389 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.9E-40 8.4E-45 309.9 26.8 240 91-388 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.3E-31 5E-36 229.7 14.7 157 91-259 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 9.7E-25 2.1E-29 175.8 12.3 106 93-224 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.8 7.8E-18 1.7E-22 145.1 11.9 110 279-388 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.2 5.9E-06 1.3E-10 64.0 6.8 94 89-226 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.0 0.003 6.5E-08 51.4 7.4 96 87-226 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.7 0.009 2E-07 45.3 7.9 89 93-225 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.4 0.24 5.2E-06 40.4 7.9 32 87-120 13-44 (124)
31 cd05484 retropepsin_like_LTR_2 91.7 0.2 4.4E-06 38.2 3.5 29 91-121 1-29 (91)
32 PF13975 gag-asp_proteas: gag- 87.7 1 2.2E-05 32.8 4.2 34 87-122 5-38 (72)
33 COG3577 Predicted aspartyl pro 85.0 3 6.6E-05 36.7 6.3 84 85-207 100-183 (215)
34 PF00077 RVP: Retroviral aspar 81.3 2.3 4.9E-05 32.8 3.9 29 92-122 7-35 (100)
35 PF11925 DUF3443: Protein of u 80.1 5.5 0.00012 38.4 6.7 54 171-227 83-149 (370)
36 PF08284 RVP_2: Retroviral asp 73.6 18 0.00039 29.8 7.3 30 360-389 103-132 (135)
37 cd05482 HIV_retropepsin_like R 72.2 5.1 0.00011 30.4 3.4 25 94-120 2-26 (87)
38 cd06095 RP_RTVL_H_like Retrope 70.2 5.6 0.00012 29.9 3.3 27 94-122 2-28 (86)
39 PF12384 Peptidase_A2B: Ty3 tr 58.7 13 0.00029 31.6 3.6 29 90-120 34-62 (177)
40 PF05984 Cytomega_UL20A: Cytom 57.3 12 0.00027 27.6 2.8 31 1-33 1-32 (100)
41 cd05479 RP_DDI RP_DDI; retrope 43.0 27 0.00058 28.2 3.1 32 355-386 93-124 (124)
42 PF08194 DIM: DIM protein; In 39.1 30 0.00064 21.5 2.0 16 1-17 1-16 (36)
43 PF09668 Asp_protease: Asparty 37.4 59 0.0013 26.4 4.2 32 88-121 22-53 (124)
44 cd01206 Homer Homer type EVH1 32.4 1E+02 0.0022 24.4 4.6 40 186-230 54-94 (111)
45 cd05475 nucellin_like Nucellin 31.7 73 0.0016 29.4 4.5 32 89-120 157-194 (273)
46 cd05476 pepsin_A_like_plant Ch 28.2 88 0.0019 28.7 4.4 18 103-120 176-193 (265)
47 cd05481 retropepsin_like_LTR_1 25.8 54 0.0012 25.0 2.1 18 102-119 9-26 (93)
48 cd05471 pepsin_like Pepsin-lik 24.9 75 0.0016 29.0 3.3 35 88-122 179-221 (283)
49 TIGR03698 clan_AA_DTGF clan AA 24.8 95 0.0021 24.3 3.4 24 93-116 2-29 (107)
50 cd06097 Aspergillopepsin_like 24.8 72 0.0016 29.5 3.2 34 88-121 176-216 (278)
51 cd06098 phytepsin Phytepsin, a 23.1 88 0.0019 29.6 3.5 32 89-120 188-227 (317)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.3e-69 Score=536.34 Aligned_cols=376 Identities=62% Similarity=1.062 Sum_probs=315.7
Q ss_pred HHHhhccccccCCCceEEEEeccCCCCCCCCCCCCChhHHHHHHHhhhHhhhhccccccccCCCCCcccccccCCccEEE
Q 016180 14 LCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQNSSISSSKASQADIIPNNANYLI 93 (394)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 93 (394)
+.++.++...++.++++++|+||++|++|+..+...+.++++++++++.+|.+++.++... ......+....+++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~Y~v 87 (431)
T PLN03146 10 FSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS--PNDPQSDLISNGGEYLM 87 (431)
T ss_pred HHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc--CCccccCcccCCccEEE
Confidence 4455556666688899999999999999988777778899999999999999888644222 12334455567889999
Q ss_pred EEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCC-CCCCC-CceeeEe
Q 016180 94 RISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK-SCSGV-NCQYSVS 171 (394)
Q Consensus 94 ~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~-~c~~~-~~~~~~~ 171 (394)
+|.||||||++.|++||||+++||+|.+|. .|..+.++.|||++|+||+.++|.++.|..++.. .|..+ .|.|.+.
T Consensus 88 ~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~--~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~ 165 (431)
T PLN03146 88 NISIGTPPVPILAIADTGSDLIWTQCKPCD--DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS 165 (431)
T ss_pred EEEcCCCCceEEEEECCCCCcceEcCCCCc--ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence 999999999999999999999999999998 8988889999999999999999999999877654 47554 6999999
Q ss_pred cCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCCCCCcceeeecCCCCCchhhhhhhccCCceEEeecCCC
Q 016180 172 YGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVS 251 (394)
Q Consensus 172 Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~sl~~ql~~~~~~~Fs~~l~~~~ 251 (394)
|+||+.+.|.+++|+|+|++..++.+.++++.|||++...+.|....+||||||++.+|+++|++....++||+||.+..
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~ 245 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLS 245 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCC
Confidence 99999878999999999998655555799999999998887664468999999999999999987655679999997531
Q ss_pred -----CceEEeCCCCccCCCCeeeeecc-C-CCCceEEEEEEEEEccEEecc--------CCCcEEEcC-----------
Q 016180 252 -----STKINFGTNGIVSGPGVVSTPLT-K-AKTFYVLTIDAISVGNQRLGV--------STPDIVIDS----------- 305 (394)
Q Consensus 252 -----~g~l~fGg~~~~~g~~~~~~p~~-~-~~~~w~v~l~~i~v~~~~~~~--------~~~~~iiDs----------- 305 (394)
.|.|+||+.+++.+.++.|+|++ + ...+|+|+|++|+||++.+.. +.+++||||
T Consensus 246 ~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~ 325 (431)
T PLN03146 246 SDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDF 325 (431)
T ss_pred CCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHH
Confidence 29999999766666668999998 3 457999999999999988621 235799999
Q ss_pred ------------C------CccccccccccccCCCCCeEEEEEeCcEEEeccceeEEEeCCceEEEEEEcCCCCcceech
Q 016180 306 ------------D------PTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGN 367 (394)
Q Consensus 306 ------------~------~~~~~~~c~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG~ 367 (394)
. ....++.||.......+|+|+|+|+|+++.|++++|+++..++..|+++.+. .+.||||+
T Consensus 326 y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~-~~~~IlG~ 404 (431)
T PLN03146 326 YSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPT-SSIAIFGN 404 (431)
T ss_pred HHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCCCcEEEEEecC-CCceEECe
Confidence 0 1123568987543357999999999999999999999988777789997765 45799999
Q ss_pred hhhceeEEEEECCCCEEEEeeCCCCCC
Q 016180 368 IMQTNFLVGYDIEQQTVSFKPTDCTKQ 394 (394)
Q Consensus 368 ~fl~~~y~vfD~~~~rigfa~~~C~~~ 394 (394)
.|||++|++||++++|||||+++|.++
T Consensus 405 ~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 405 LAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred eeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 999999999999999999999999874
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.5e-55 Score=438.21 Aligned_cols=289 Identities=21% Similarity=0.394 Sum_probs=236.0
Q ss_pred CcccccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCC
Q 016180 79 ASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQ 158 (394)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~ 158 (394)
..+...++.+.+|+++|+||||||+|.|+|||||+++||+|..|....| ..|+.|||++||||+...+...
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C--~~~~~yd~s~SSTy~~~~~~~~------- 179 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGC--APHRKFDPKKSSTYTKLKLGDE------- 179 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccc--cccCCCCccccCCcEecCCCCc-------
Confidence 4566678899999999999999999999999999999999999985567 5789999999999998432110
Q ss_pred CCCCCCCceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCC-CC-CCCcceeeecCCCCCc------
Q 016180 159 KSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS------ 230 (394)
Q Consensus 159 ~~c~~~~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GIlGLg~~~~s------ 230 (394)
...+.+.||+|+.. |.++.|+|++|+. .+++|.||+++..++ .| ..++|||||||++.++
T Consensus 180 ------~~~~~i~YGsGs~~-G~l~~DtV~ig~l-----~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~ 247 (482)
T PTZ00165 180 ------SAETYIQYGTGECV-LALGKDTVKIGGL-----KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKK 247 (482)
T ss_pred ------cceEEEEeCCCcEE-EEEEEEEEEECCE-----EEccEEEEEEEeccccccccccccceeecCCCcccccccCC
Confidence 02578999999887 9999999999987 999999999998765 45 5689999999998752
Q ss_pred -------hhhhhhhccCCceEEeecCCCC--ceEEeCC-CCccC--CCCeeeeeccCCCCceEEEEEEEEEccEEec--c
Q 016180 231 -------LISQMRTTIAGKFSYCLVPVSS--TKINFGT-NGIVS--GPGVVSTPLTKAKTFYVLTIDAISVGNQRLG--V 296 (394)
Q Consensus 231 -------l~~ql~~~~~~~Fs~~l~~~~~--g~l~fGg-~~~~~--g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~--~ 296 (394)
+.+| +.+.++.||+||.+... |+|+||| +.++. +..+.|+|++ ...||+|+|++|+||++.+. .
T Consensus 248 ~~p~~~~l~~q-gli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~vgg~~~~~~~ 325 (482)
T PTZ00165 248 ALPIVDNIKKQ-NLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDILIDGKSLGFCD 325 (482)
T ss_pred CCCHHHHHHHc-CCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEEECCEEeeecC
Confidence 3334 56788999999986533 9999999 44443 4459999999 88999999999999997662 3
Q ss_pred CCCcEEEcCCC----------------ccccccccccccCCCCCeEEEEEeCc-----EEEeccceeEEEe----CCceE
Q 016180 297 STPDIVIDSDP----------------TGSLELCYSFNSLSQVPEVTIHFRGA-----DVKLSRSNFFVKV----SEDIV 351 (394)
Q Consensus 297 ~~~~~iiDs~~----------------~~~~~~c~~~~~~~~~P~i~f~f~g~-----~~~l~~~~~~~~~----~~~~~ 351 (394)
....+|+||++ .....+|+... .+|+|+|+|+|. +|+|+|++|+++. ..+..
T Consensus 326 ~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~~~C~~~~---~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~ 402 (482)
T PTZ00165 326 RKCKAAIDTGSSLITGPSSVINPLLEKIPLEEDCSNKD---SLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQ 402 (482)
T ss_pred CceEEEEcCCCccEeCCHHHHHHHHHHcCCcccccccc---cCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCe
Confidence 56789999911 11223676543 789999999864 8999999999974 23468
Q ss_pred EEE-EEcCC-----CCcceechhhhceeEEEEECCCCEEEEeeCCCCC
Q 016180 352 CSV-FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTK 393 (394)
Q Consensus 352 C~~-i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~C~~ 393 (394)
|+. |++.+ ++.||||++|||++|+|||++++|||||+++|..
T Consensus 403 C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 403 CVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred EEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 975 87643 3579999999999999999999999999999863
No 3
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.1e-52 Score=403.31 Aligned_cols=294 Identities=27% Similarity=0.448 Sum_probs=235.8
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCcee
Q 016180 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (394)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (394)
+.|+++|+||||+|++.|+|||||+++||+|.+|. .|..+.++.|||++|+|++.+.|++..|.. ...|.++.|.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~--~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~ 77 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK--NCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEY 77 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC--CcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcE
Confidence 58999999999999999999999999999999998 887777899999999999999999999953 34677678999
Q ss_pred eEecCCCCeeeeEEEEEEEEecCCCCC--cccCCceEEEeEeecCCCC-CCCcceeeecCCCCCc--------hhhhhhh
Q 016180 169 SVSYGDGSFSNGNLATETVTLGSTTGQ--AVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDIS--------LISQMRT 237 (394)
Q Consensus 169 ~~~Yg~gs~~~G~~~~D~v~~g~~~~~--~~~~~~~~fg~~~~~~~~~-~~~~~GIlGLg~~~~s--------l~~ql~~ 237 (394)
.+.|++|+.+.|.+++|+|+||+.... .....++.|||+....+.| ....+||||||+...+ +.+| ..
T Consensus 78 ~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~-~~ 156 (326)
T cd06096 78 SISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK-RP 156 (326)
T ss_pred EEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh-cc
Confidence 999999987779999999999976211 0012357899999887766 5678999999998653 1223 22
Q ss_pred cc--CCceEEeecCCCCceEEeCC--CCccC---------CCCeeeeeccCCCCceEEEEEEEEEccEE---eccCCCcE
Q 016180 238 TI--AGKFSYCLVPVSSTKINFGT--NGIVS---------GPGVVSTPLTKAKTFYVLTIDAISVGNQR---LGVSTPDI 301 (394)
Q Consensus 238 ~~--~~~Fs~~l~~~~~g~l~fGg--~~~~~---------g~~~~~~p~~~~~~~w~v~l~~i~v~~~~---~~~~~~~~ 301 (394)
+. .++||+||.+.+ |+|+||| ..++. ...+.|+|+. ...+|.|++++|+|+++. .......+
T Consensus 157 ~~~~~~~FS~~l~~~~-G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~~~~~~~~~~~~a 234 (326)
T cd06096 157 KLKKDKIFSICLSEDG-GELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGTTSNSGNTKGLGM 234 (326)
T ss_pred cccCCceEEEEEcCCC-eEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEcccccceecccCCCE
Confidence 33 499999998754 9999999 23333 1348999999 678999999999999875 23467789
Q ss_pred EEcCCCcccccc--cccc-ccCCCCCeEEEEEe-CcEEEeccceeEEEeCCceEEEEEEcCCCCcceechhhhceeEEEE
Q 016180 302 VIDSDPTGSLEL--CYSF-NSLSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGY 377 (394)
Q Consensus 302 iiDs~~~~~~~~--c~~~-~~~~~~P~i~f~f~-g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG~~fl~~~y~vf 377 (394)
||||+......+ .+.. .. .+|+|+|+|+ |++++++|++|++...+..+|+++... .+.||||++|||++|+||
T Consensus 235 ivDSGTs~~~lp~~~~~~l~~--~~P~i~~~f~~g~~~~i~p~~y~~~~~~~~c~~~~~~~-~~~~ILG~~flr~~y~vF 311 (326)
T cd06096 235 LVDSGSTLSHFPEDLYNKINN--FFPTITIIFENNLKIDWKPSSYLYKKESFWCKGGEKSV-SNKPILGASFFKNKQIIF 311 (326)
T ss_pred EEeCCCCcccCCHHHHHHHHh--hcCcEEEEEcCCcEEEECHHHhccccCCceEEEEEecC-CCceEEChHHhcCcEEEE
Confidence 999944332221 1111 11 4599999998 799999999999987655555556554 578999999999999999
Q ss_pred ECCCCEEEEeeCCCC
Q 016180 378 DIEQQTVSFKPTDCT 392 (394)
Q Consensus 378 D~~~~rigfa~~~C~ 392 (394)
|++++|||||+++|.
T Consensus 312 D~~~~riGfa~~~C~ 326 (326)
T cd06096 312 DLDNNRIGFVESNCP 326 (326)
T ss_pred ECcCCEEeeEcCCCC
Confidence 999999999999994
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.9e-52 Score=400.40 Aligned_cols=275 Identities=25% Similarity=0.458 Sum_probs=228.7
Q ss_pred cccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCC
Q 016180 84 IIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSG 163 (394)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~ 163 (394)
.+..+..|+++|.||||||++.|+|||||+++||+|..|....| +.++.|||++|+|++...
T Consensus 4 ~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c--~~~~~f~~~~Sst~~~~~---------------- 65 (317)
T cd05478 4 TNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQAC--SNHNRFNPRQSSTYQSTG---------------- 65 (317)
T ss_pred ccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccc--cccCcCCCCCCcceeeCC----------------
Confidence 34568999999999999999999999999999999999984456 568999999999999887
Q ss_pred CCceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCC--CCCcceeeecCCCCCc------hhhhh
Q 016180 164 VNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGLGGGDIS------LISQM 235 (394)
Q Consensus 164 ~~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GIlGLg~~~~s------l~~ql 235 (394)
+.|.+.|++|+. .|.+++|+|++|+. .++++.|||+....+.+ ....+||||||++.++ ++.||
T Consensus 66 --~~~~~~yg~gs~-~G~~~~D~v~ig~~-----~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L 137 (317)
T cd05478 66 --QPLSIQYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNM 137 (317)
T ss_pred --cEEEEEECCceE-EEEEeeeEEEECCE-----EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHH
Confidence 899999999985 59999999999987 89999999998877654 3468999999987553 43333
Q ss_pred ---hhccCCceEEeecCCCC--ceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEec-cCCCcEEEcC--
Q 016180 236 ---RTTIAGKFSYCLVPVSS--TKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLG-VSTPDIVIDS-- 305 (394)
Q Consensus 236 ---~~~~~~~Fs~~l~~~~~--g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~-~~~~~~iiDs-- 305 (394)
+.+.+++||+||.+.+. |+|+||| .+++.|+ +.|+|+. ...+|.|++++|+|||+.+. .....+|+||
T Consensus 138 ~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~-l~~~p~~-~~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGt 215 (317)
T cd05478 138 MSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGS-LNWVPVT-AETYWQITVDSVTINGQVVACSGGCQAIVDTGT 215 (317)
T ss_pred HhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCc-eEEEECC-CCcEEEEEeeEEEECCEEEccCCCCEEEECCCc
Confidence 55678999999998753 9999999 3455665 9999999 78999999999999999873 3456899999
Q ss_pred -----------------CCccccccccccccCC--CCCeEEEEEeCcEEEeccceeEEEeCCceEEEE-EEcCC-CCcce
Q 016180 306 -----------------DPTGSLELCYSFNSLS--QVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKGIT-NSVPI 364 (394)
Q Consensus 306 -----------------~~~~~~~~c~~~~~~~--~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~-i~~~~-~~~~i 364 (394)
........++..+|.. .+|+|+|+|+|++++|||++|+.+. +..|++ |++.+ .+.||
T Consensus 216 s~~~lp~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~--~~~C~~~~~~~~~~~~~I 293 (317)
T cd05478 216 SLLVGPSSDIANIQSDIGASQNQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD--QGSCTSGFQSMGLGELWI 293 (317)
T ss_pred hhhhCCHHHHHHHHHHhCCccccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC--CCEEeEEEEeCCCCCeEE
Confidence 1111112234444442 6899999999999999999999875 468987 87764 46899
Q ss_pred echhhhceeEEEEECCCCEEEEee
Q 016180 365 YGNIMQTNFLVGYDIEQQTVSFKP 388 (394)
Q Consensus 365 lG~~fl~~~y~vfD~~~~rigfa~ 388 (394)
||++|||++|+|||++++||||||
T Consensus 294 lG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 294 LGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred echHHhcceEEEEeCCCCEEeecC
Confidence 999999999999999999999996
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.6e-52 Score=400.94 Aligned_cols=275 Identities=24% Similarity=0.453 Sum_probs=223.3
Q ss_pred cCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCC
Q 016180 86 PNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSG 163 (394)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~--~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~ 163 (394)
+.+.+|+++|.||||||+|.|+|||||+++||+|..|.. ..| ..++.|||++|+||+...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~~~---------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIAC--WLHHKYNSSKSSTYVKNG---------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccc--cCcCcCCcccCcceeeCC----------------
Confidence 468899999999999999999999999999999999972 256 467899999999999765
Q ss_pred CCceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCC-CC-CCCcceeeecCCCCCch------hhhh
Q 016180 164 VNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL------ISQM 235 (394)
Q Consensus 164 ~~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GIlGLg~~~~sl------~~ql 235 (394)
+.|.+.|++|+. .|.+++|+|+||+. .++++.|||++...+ .| ....+||||||++..+. +.+|
T Consensus 64 --~~~~i~Yg~G~~-~G~~~~D~v~~g~~-----~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 64 --TEFAIQYGSGSL-SGYLSQDTVSIGGL-----QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred --cEEEEEECCcEE-EEEEeeeEEEECCE-----EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHH
Confidence 899999999986 59999999999987 899999999998766 35 46789999999987653 2232
Q ss_pred ---hhccCCceEEeecCCC----CceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEe-ccCCCcEEEcC
Q 016180 236 ---RTTIAGKFSYCLVPVS----STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRL-GVSTPDIVIDS 305 (394)
Q Consensus 236 ---~~~~~~~Fs~~l~~~~----~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~-~~~~~~~iiDs 305 (394)
+.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+. ...+|.|+|++|+||++.. ......+||||
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~-l~~~~~~-~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDS 213 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGD-LHYVNVT-RKAYWQIHMDQVDVGSGLTLCKGGCEAIVDT 213 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCc-eEEEEcC-cceEEEEEeeEEEECCeeeecCCCCEEEECC
Confidence 5567899999998642 29999999 3345554 9999998 7889999999999998754 23456899999
Q ss_pred C-------------------CccccccccccccC--CCCCeEEEEEeCcEEEeccceeEEEeCC--ceEEEE-EEcCC--
Q 016180 306 D-------------------PTGSLELCYSFNSL--SQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV-FKGIT-- 359 (394)
Q Consensus 306 ~-------------------~~~~~~~c~~~~~~--~~~P~i~f~f~g~~~~l~~~~~~~~~~~--~~~C~~-i~~~~-- 359 (394)
+ .......+|..+|+ ..+|+|+|+|+|+.++|+|++|+++... ...|++ |+..+
T Consensus 214 GTt~~~~p~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~ 293 (325)
T cd05490 214 GTSLITGPVEEVRALQKAIGAVPLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIP 293 (325)
T ss_pred CCccccCCHHHHHHHHHHhCCccccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCC
Confidence 1 00011123333443 2689999999999999999999987643 357986 76532
Q ss_pred ---CCcceechhhhceeEEEEECCCCEEEEee
Q 016180 360 ---NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 388 (394)
Q Consensus 360 ---~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 388 (394)
...||||++|||++|+|||++++|||||+
T Consensus 294 ~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 294 PPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 45799999999999999999999999996
No 6
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=3.2e-52 Score=398.66 Aligned_cols=273 Identities=26% Similarity=0.435 Sum_probs=227.2
Q ss_pred cccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCC-CCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCC
Q 016180 84 IIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCP-PSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCS 162 (394)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~-~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~ 162 (394)
.++.+.+|+++|.||||||++.|+|||||+++||+|..|. ...| ..++.|||++|+|++..+
T Consensus 4 ~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~--------------- 66 (317)
T cd06098 4 KNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIAC--YFHSKYKSSKSSTYKKNG--------------- 66 (317)
T ss_pred cccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccc--cccCcCCcccCCCcccCC---------------
Confidence 3567899999999999999999999999999999999996 2368 467899999999999876
Q ss_pred CCCceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCC-CC-CCCcceeeecCCCCCch---------
Q 016180 163 GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL--------- 231 (394)
Q Consensus 163 ~~~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GIlGLg~~~~sl--------- 231 (394)
..+.+.|++|+.. |.+++|+|++|+. +++++.||+++...+ .| ...++||||||++..+.
T Consensus 67 ---~~~~i~Yg~G~~~-G~~~~D~v~ig~~-----~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 137 (317)
T cd06098 67 ---TSASIQYGTGSIS-GFFSQDSVTVGDL-----VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYN 137 (317)
T ss_pred ---CEEEEEcCCceEE-EEEEeeEEEECCE-----EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHH
Confidence 8899999999865 9999999999987 899999999998765 34 56789999999986652
Q ss_pred -hhhhhhccCCceEEeecCCC----CceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEe--ccCCCcEE
Q 016180 232 -ISQMRTTIAGKFSYCLVPVS----STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRL--GVSTPDIV 302 (394)
Q Consensus 232 -~~ql~~~~~~~Fs~~l~~~~----~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~--~~~~~~~i 302 (394)
++| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+. ...||.|++++|+|+++.+ ......+|
T Consensus 138 l~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~~ai 214 (317)
T cd06098 138 MVEQ-GLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGE-HTYVPVT-RKGYWQFEMGDVLIGGKSTGFCAGGCAAI 214 (317)
T ss_pred HHhc-CCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccc-eEEEecC-cCcEEEEEeCeEEECCEEeeecCCCcEEE
Confidence 334 5577899999998642 29999999 4556665 9999999 7889999999999999875 23456799
Q ss_pred EcCCC------------ccccccccccccCCCCCeEEEEEeCcEEEeccceeEEEeCC--ceEEEE-EEcCC-----CCc
Q 016180 303 IDSDP------------TGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV-FKGIT-----NSV 362 (394)
Q Consensus 303 iDs~~------------~~~~~~c~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~--~~~C~~-i~~~~-----~~~ 362 (394)
+||+. .....+|+... .+|+|+|+|+|+.++|+|++|+++..+ ...|++ |+..+ ++.
T Consensus 215 vDTGTs~~~lP~~~~~~i~~~~~C~~~~---~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ 291 (317)
T cd06098 215 ADSGTSLLAGPTTIVTQINSAVDCNSLS---SMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPL 291 (317)
T ss_pred EecCCcceeCCHHHHHhhhccCCccccc---cCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCe
Confidence 99921 11234566432 689999999999999999999987543 358986 76432 347
Q ss_pred ceechhhhceeEEEEECCCCEEEEee
Q 016180 363 PIYGNIMQTNFLVGYDIEQQTVSFKP 388 (394)
Q Consensus 363 ~ilG~~fl~~~y~vfD~~~~rigfa~ 388 (394)
||||++|||++|+|||++++|||||+
T Consensus 292 ~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 292 WILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEechHHhcccEEEEeCCCCEEeecC
Confidence 99999999999999999999999996
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3.2e-52 Score=398.70 Aligned_cols=269 Identities=26% Similarity=0.458 Sum_probs=222.3
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceeeE
Q 016180 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSV 170 (394)
Q Consensus 91 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 170 (394)
|+++|.||||||+++|+|||||+++||+|..|....| ..++.|||++|+|++..+ +.|.+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C--~~~~~y~~~~SsT~~~~~------------------~~~~i 60 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQAC--TKHNRFQPSESSTYVSNG------------------EAFSI 60 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CccceECCCCCcccccCC------------------cEEEE
Confidence 8999999999999999999999999999999985567 567899999999999887 99999
Q ss_pred ecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCC-CC-CCCcceeeecCCCCCch----------hhhhhhc
Q 016180 171 SYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL----------ISQMRTT 238 (394)
Q Consensus 171 ~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GIlGLg~~~~sl----------~~ql~~~ 238 (394)
.|++|+. .|.+++|+|++|+. .++++.|||+....+ .| ...++||||||++.++. .+| +.+
T Consensus 61 ~Yg~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~q-g~i 133 (316)
T cd05486 61 QYGTGSL-TGIIGIDQVTVEGI-----TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQ-NLV 133 (316)
T ss_pred EeCCcEE-EEEeeecEEEECCE-----EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhc-CCC
Confidence 9999986 59999999999987 899999999887765 35 56789999999977652 334 556
Q ss_pred cCCceEEeecCCC----CceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEec-cCCCcEEEcCC-----
Q 016180 239 IAGKFSYCLVPVS----STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLG-VSTPDIVIDSD----- 306 (394)
Q Consensus 239 ~~~~Fs~~l~~~~----~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~-~~~~~~iiDs~----- 306 (394)
..++||+||.+.. .|+|+||| .+++.|+ +.|+|+. ...+|.|++++|+|+++.+. .....+||||+
T Consensus 134 ~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~-l~~~pi~-~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~ 211 (316)
T cd05486 134 ELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQ-LNWVPVT-VQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLIT 211 (316)
T ss_pred CCCEEEEEEccCCCCCCCcEEEEcccCHHHcccc-eEEEECC-CceEEEEEeeEEEEecceEecCCCCEEEECCCcchhh
Confidence 7899999998642 29999999 3456665 9999999 78999999999999998762 34568999991
Q ss_pred -------------CccccccccccccCC--CCCeEEEEEeCcEEEeccceeEEEe--CCceEEEE-EEcCC-----CCcc
Q 016180 307 -------------PTGSLELCYSFNSLS--QVPEVTIHFRGADVKLSRSNFFVKV--SEDIVCSV-FKGIT-----NSVP 363 (394)
Q Consensus 307 -------------~~~~~~~c~~~~~~~--~~P~i~f~f~g~~~~l~~~~~~~~~--~~~~~C~~-i~~~~-----~~~~ 363 (394)
.......+|..+|+. .+|+|+|+|+|++++|+|++|++.. .++..|++ |+..+ .+.|
T Consensus 212 lP~~~~~~l~~~~~~~~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 291 (316)
T cd05486 212 GPSGDIKQLQNYIGATATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLW 291 (316)
T ss_pred cCHHHHHHHHHHhCCcccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeE
Confidence 001112334444542 6899999999999999999999875 23468986 76532 3579
Q ss_pred eechhhhceeEEEEECCCCEEEEee
Q 016180 364 IYGNIMQTNFLVGYDIEQQTVSFKP 388 (394)
Q Consensus 364 ilG~~fl~~~y~vfD~~~~rigfa~ 388 (394)
|||++|||++|+|||++++|||||+
T Consensus 292 ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 292 ILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEchHHhcceEEEEeCCCCEeeccC
Confidence 9999999999999999999999996
No 8
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-51 Score=404.50 Aligned_cols=305 Identities=42% Similarity=0.753 Sum_probs=249.9
Q ss_pred ccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCC
Q 016180 83 DIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCS 162 (394)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~ 162 (394)
.....+++|+++|.||||||+|+|++||||+++||+|.+|.. .|..+.++.|||++||||+...|.++.|...+...|.
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~-~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~ 117 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS-ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSP 117 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc-cccccCCCccCccccccccccCCCCccccccccCccc
Confidence 334567899999999999999999999999999999999973 5875555669999999999999999999998887555
Q ss_pred CCCceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCC-C-CCcceeeecCCCCCchhhhhhhcc-
Q 016180 163 GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-N-SKTTGIVGLGGGDISLISQMRTTI- 239 (394)
Q Consensus 163 ~~~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~-~-~~~~GIlGLg~~~~sl~~ql~~~~- 239 (394)
+..|.|.+.||+|+.+.|++++|+|++++.+ .+.++++.|||+....+.+ . .+++||||||++.+++.+|+....
T Consensus 118 ~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~ 195 (398)
T KOG1339|consen 118 NSSCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYN 195 (398)
T ss_pred CCcCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccC
Confidence 5599999999998777799999999999832 2378889999999997643 3 578999999999999999976643
Q ss_pred -CCceEEeecCCC-----CceEEeCCC--CccCCCCeeeeeccCCC--CceEEEEEEEEEccE-----Ee-ccCCCcEEE
Q 016180 240 -AGKFSYCLVPVS-----STKINFGTN--GIVSGPGVVSTPLTKAK--TFYVLTIDAISVGNQ-----RL-GVSTPDIVI 303 (394)
Q Consensus 240 -~~~Fs~~l~~~~-----~g~l~fGg~--~~~~g~~~~~~p~~~~~--~~w~v~l~~i~v~~~-----~~-~~~~~~~ii 303 (394)
.++||+||.+.+ .|.|+||+. .++.+ .+.|+||+ .. .||+|+|.+|+|+++ .. .....++|+
T Consensus 196 ~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~-~l~~tPl~-~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~ii 273 (398)
T KOG1339|consen 196 AINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTG-SLTYTPLL-SNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAII 273 (398)
T ss_pred CceeEEEEeCCCCCCCCCCcEEEECCCcccCcCC-ceEEEeec-cCCCccEEEEEeEEEECCccCCCcceEecCCCCEEE
Confidence 335999999874 399999993 33444 49999999 44 499999999999973 22 223588999
Q ss_pred cC--------------------CC---cc----ccccccccccC-CCCCeEEEEEe-CcEEEeccceeEEEeCCceE-EE
Q 016180 304 DS--------------------DP---TG----SLELCYSFNSL-SQVPEVTIHFR-GADVKLSRSNFFVKVSEDIV-CS 353 (394)
Q Consensus 304 Ds--------------------~~---~~----~~~~c~~~~~~-~~~P~i~f~f~-g~~~~l~~~~~~~~~~~~~~-C~ 353 (394)
|| .. .. +...|+..... ..+|+|+|+|+ |+.|.+++++|+++...+.. |+
T Consensus 274 DSGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~Cl 353 (398)
T KOG1339|consen 274 DSGTSLTYLPTSAYNALREAIGAEVSVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGVCL 353 (398)
T ss_pred ECCcceeeccHHHHHHHHHHHHhheeccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEECCCCCcee
Confidence 99 11 22 23378876411 13999999999 79999999999998876444 99
Q ss_pred EEEcCC-C-CcceechhhhceeEEEEECC-CCEEEEee--CCCC
Q 016180 354 VFKGIT-N-SVPIYGNIMQTNFLVGYDIE-QQTVSFKP--TDCT 392 (394)
Q Consensus 354 ~i~~~~-~-~~~ilG~~fl~~~y~vfD~~-~~rigfa~--~~C~ 392 (394)
++.... . ..||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 354 ~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 354 AFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred eEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 944433 3 48999999999999999999 99999999 7886
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=8.3e-51 Score=389.37 Aligned_cols=272 Identities=26% Similarity=0.490 Sum_probs=224.0
Q ss_pred CccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCce
Q 016180 88 NANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ 167 (394)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (394)
|..|+++|.||||||++.|++||||+++||+|..|....| ..++.|||++|+||+..+ |.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C--~~~~~f~~~~SsT~~~~~------------------~~ 60 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQAC--TNHTKFNPSQSSTYSTNG------------------ET 60 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccc--cccCCCCcccCCCceECC------------------cE
Confidence 4689999999999999999999999999999999985567 467899999999999876 99
Q ss_pred eeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCC-C-CCCcceeeecCCCCC------chhhhh---h
Q 016180 168 YSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDI------SLISQM---R 236 (394)
Q Consensus 168 ~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GIlGLg~~~~------sl~~ql---~ 236 (394)
|++.|++|+.. |.+++|+|++|+. .++++.|||+....+. | ....+||||||++.. +++.|| +
T Consensus 61 ~~~~Yg~Gs~~-G~~~~D~i~~g~~-----~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g 134 (318)
T cd05477 61 FSLQYGSGSLT-GIFGYDTVTVQGI-----IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQN 134 (318)
T ss_pred EEEEECCcEEE-EEEEeeEEEECCE-----EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcC
Confidence 99999999865 9999999999987 8999999999987653 4 457899999998644 345454 4
Q ss_pred hccCCceEEeecCCC---CceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEec--cCCCcEEEcC----
Q 016180 237 TTIAGKFSYCLVPVS---STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLG--VSTPDIVIDS---- 305 (394)
Q Consensus 237 ~~~~~~Fs~~l~~~~---~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~--~~~~~~iiDs---- 305 (394)
.+.+++||+||.+.. .|+|+||| .+++.++ +.|+|+. ...+|.|++++|+|+++.+. .....+||||
T Consensus 135 ~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~-l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~ 212 (318)
T cd05477 135 LLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQ-IYWTPVT-SETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSL 212 (318)
T ss_pred CcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCc-eEEEecC-CceEEEEEeeEEEECCEEecccCCCceeeECCCCcc
Confidence 567899999998753 29999999 3455554 9999999 78999999999999998762 3456799999
Q ss_pred ---------------CCccccccccccccCC--CCCeEEEEEeCcEEEeccceeEEEeCCceEEEE-EEcCC------CC
Q 016180 306 ---------------DPTGSLELCYSFNSLS--QVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKGIT------NS 361 (394)
Q Consensus 306 ---------------~~~~~~~~c~~~~~~~--~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~-i~~~~------~~ 361 (394)
........+|..+|.. .+|+|+|+|+|+++.||+++|+... ...|+. |.+.. ..
T Consensus 213 ~~lP~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~~~i~~~~~~~~~~~~ 290 (318)
T cd05477 213 LTAPQQVMSTLMQSIGAQQDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN--NGYCTVGIEPTYLPSQNGQP 290 (318)
T ss_pred EECCHHHHHHHHHHhCCccccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC--CCeEEEEEEecccCCCCCCc
Confidence 1111112344445542 6899999999999999999999875 357974 86431 24
Q ss_pred cceechhhhceeEEEEECCCCEEEEeeC
Q 016180 362 VPIYGNIMQTNFLVGYDIEQQTVSFKPT 389 (394)
Q Consensus 362 ~~ilG~~fl~~~y~vfD~~~~rigfa~~ 389 (394)
.||||++|||++|++||++++|||||++
T Consensus 291 ~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 291 LWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 6999999999999999999999999986
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1e-50 Score=388.83 Aligned_cols=273 Identities=26% Similarity=0.489 Sum_probs=226.3
Q ss_pred ccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCC
Q 016180 85 IPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGV 164 (394)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~ 164 (394)
++.+..|+++|.||||+|++.|+|||||+++||+|..|....| ..++.|+|++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C--~~~~~y~~~~Sst~~~~~----------------- 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIAC--FLHSKYDSSASSTYKANG----------------- 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCccc--CCcceECCCCCcceeeCC-----------------
Confidence 4467889999999999999999999999999999999985567 456899999999999876
Q ss_pred CceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCC-C-CCCcceeeecCCCCCchh----------
Q 016180 165 NCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDISLI---------- 232 (394)
Q Consensus 165 ~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GIlGLg~~~~sl~---------- 232 (394)
|.|.+.|++|+. .|.+++|+|++++. .++++.|||++...+. | ....+||||||++..+..
T Consensus 66 -~~~~~~y~~g~~-~G~~~~D~v~ig~~-----~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 138 (320)
T cd05488 66 -TEFKIQYGSGSL-EGFVSQDTLSIGDL-----TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMI 138 (320)
T ss_pred -CEEEEEECCceE-EEEEEEeEEEECCE-----EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHH
Confidence 899999999986 59999999999987 8999999999877653 4 457899999999876532
Q ss_pred hhhhhccCCceEEeecCCC--CceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEeccCCCcEEEcC---
Q 016180 233 SQMRTTIAGKFSYCLVPVS--STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDS--- 305 (394)
Q Consensus 233 ~ql~~~~~~~Fs~~l~~~~--~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~iiDs--- 305 (394)
+| +.+.+++||+||.+.+ .|+|+||| .+++.++ +.|+|+. ...+|.|++++|+||++.+......+++||
T Consensus 139 ~q-g~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~-~~~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt 215 (320)
T cd05488 139 NQ-GLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGK-ITWLPVR-RKAYWEVELEKIGLGDEELELENTGAAIDTGTS 215 (320)
T ss_pred hc-CCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCc-eEEEeCC-cCcEEEEEeCeEEECCEEeccCCCeEEEcCCcc
Confidence 33 5677899999999863 39999999 3455555 9999999 778999999999999988755567899999
Q ss_pred ----------------CCccccccccccccCC--CCCeEEEEEeCcEEEeccceeEEEeCCceEEEE-EEcCC-----CC
Q 016180 306 ----------------DPTGSLELCYSFNSLS--QVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKGIT-----NS 361 (394)
Q Consensus 306 ----------------~~~~~~~~c~~~~~~~--~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~-i~~~~-----~~ 361 (394)
........+|..+|.. .+|+|+|+|+|+++.|||++|+++.. ..|++ |...+ ..
T Consensus 216 ~~~lp~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~--g~C~~~~~~~~~~~~~~~ 293 (320)
T cd05488 216 LIALPSDLAEMLNAEIGAKKSWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS--GSCISAFTGMDFPEPVGP 293 (320)
T ss_pred cccCCHHHHHHHHHHhCCccccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC--CeEEEEEEECcCCCCCCC
Confidence 1111122344445542 68999999999999999999998643 47987 66532 34
Q ss_pred cceechhhhceeEEEEECCCCEEEEee
Q 016180 362 VPIYGNIMQTNFLVGYDIEQQTVSFKP 388 (394)
Q Consensus 362 ~~ilG~~fl~~~y~vfD~~~~rigfa~ 388 (394)
.||||++|||++|+|||++++|||||+
T Consensus 294 ~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 294 LAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred eEEEchHHhhheEEEEeCCCCEEeecC
Confidence 799999999999999999999999996
No 11
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.4e-50 Score=388.97 Aligned_cols=275 Identities=25% Similarity=0.430 Sum_probs=225.2
Q ss_pred ccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCC
Q 016180 85 IPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCS 162 (394)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~--~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~ 162 (394)
++.+..|+++|+||||+|+++|++||||+++||++..|.. ..| ..++.|||++|+|++...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTAC--VTHNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhh--cccCcCCCCCCeeeeECC---------------
Confidence 4567899999999999999999999999999999998872 245 567899999999999876
Q ss_pred CCCceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCC-CC-CCCcceeeecCCCCCc----------
Q 016180 163 GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS---------- 230 (394)
Q Consensus 163 ~~~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GIlGLg~~~~s---------- 230 (394)
|.|++.|++|+. .|.+++|+|++|+. .+ ++.||++..... .| ....+||||||++..+
T Consensus 66 ---~~~~~~Yg~g~~-~G~~~~D~v~~g~~-----~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 135 (326)
T cd05487 66 ---TEFTIHYASGTV-KGFLSQDIVTVGGI-----PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDN 135 (326)
T ss_pred ---EEEEEEeCCceE-EEEEeeeEEEECCE-----Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHH
Confidence 999999999985 59999999999986 66 488999988653 34 4578999999997665
Q ss_pred hhhhhhhccCCceEEeecCCC----CceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEec-cCCCcEEE
Q 016180 231 LISQMRTTIAGKFSYCLVPVS----STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLG-VSTPDIVI 303 (394)
Q Consensus 231 l~~ql~~~~~~~Fs~~l~~~~----~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~-~~~~~~ii 303 (394)
|++| +.+.+++||+||.+.+ .|+|+||| .+++.|+ +.|+|+. ...+|+|+|++|+|+++.+. .....+||
T Consensus 136 L~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~-l~~~~~~-~~~~w~v~l~~i~vg~~~~~~~~~~~aii 212 (326)
T cd05487 136 IMSQ-GVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGD-FHYINTS-KTGFWQIQMKGVSVGSSTLLCEDGCTAVV 212 (326)
T ss_pred HHhc-CCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCc-eEEEECC-cCceEEEEecEEEECCEEEecCCCCEEEE
Confidence 5666 7788999999998753 29999999 4456665 9999998 78899999999999998763 34567999
Q ss_pred cCCC------------------ccccccccccccCC--CCCeEEEEEeCcEEEeccceeEEEeCC--ceEEEE-EEcCC-
Q 016180 304 DSDP------------------TGSLELCYSFNSLS--QVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV-FKGIT- 359 (394)
Q Consensus 304 Ds~~------------------~~~~~~c~~~~~~~--~~P~i~f~f~g~~~~l~~~~~~~~~~~--~~~C~~-i~~~~- 359 (394)
||.. ......+|..+|+. .+|+|+|+|+|+.++|++++|+++..+ +..|+. |+..+
T Consensus 213 DSGts~~~lP~~~~~~l~~~~~~~~~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~ 292 (326)
T cd05487 213 DTGASFISGPTSSISKLMEALGAKERLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDI 292 (326)
T ss_pred CCCccchhCcHHHHHHHHHHhCCcccCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCC
Confidence 9910 00012233344442 689999999999999999999997643 568975 77532
Q ss_pred ----CCcceechhhhceeEEEEECCCCEEEEeeC
Q 016180 360 ----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 389 (394)
Q Consensus 360 ----~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 389 (394)
++.||||++|||++|+|||++++|||||++
T Consensus 293 ~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 293 PPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 357999999999999999999999999986
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.3e-50 Score=389.36 Aligned_cols=277 Identities=28% Similarity=0.490 Sum_probs=228.9
Q ss_pred ccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCC
Q 016180 83 DIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKS 160 (394)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~--~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~ 160 (394)
..++.+..|+++|.||||+|++.|++||||+++||+|..|.. ..| ..++.|||++|+|++..+
T Consensus 4 ~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~Sst~~~~~------------- 68 (329)
T cd05485 4 LSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIAC--LLHNKYDSTKSSTYKKNG------------- 68 (329)
T ss_pred ceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccc--cCCCeECCcCCCCeEECC-------------
Confidence 446678999999999999999999999999999999999962 246 357889999999999887
Q ss_pred CCCCCceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCC-CC-CCCcceeeecCCCCCch-------
Q 016180 161 CSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL------- 231 (394)
Q Consensus 161 c~~~~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GIlGLg~~~~sl------- 231 (394)
|.|.+.|++|+. .|.+++|+|++|+. .++++.||++....+ .| ....+||||||++..+.
T Consensus 69 -----~~~~i~Y~~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~ 137 (329)
T cd05485 69 -----TEFAIQYGSGSL-SGFLSTDTVSVGGV-----SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVF 137 (329)
T ss_pred -----eEEEEEECCceE-EEEEecCcEEECCE-----EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHH
Confidence 999999999985 59999999999987 899999999987765 34 56789999999987652
Q ss_pred ---hhhhhhccCCceEEeecCCC----CceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEeccCCCcEE
Q 016180 232 ---ISQMRTTIAGKFSYCLVPVS----STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIV 302 (394)
Q Consensus 232 ---~~ql~~~~~~~Fs~~l~~~~----~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~i 302 (394)
.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+. ...+|.|++++++++++.+......+|
T Consensus 138 ~~l~~q-g~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~-~~~~~~v~~~~i~v~~~~~~~~~~~~i 214 (329)
T cd05485 138 YNMVNQ-KLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGN-FTYLPVT-RKGYWQFKMDSVSVGEGEFCSGGCQAI 214 (329)
T ss_pred HHHHhC-CCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccc-eEEEEcC-CceEEEEEeeEEEECCeeecCCCcEEE
Confidence 334 5567899999998753 29999999 3455555 9999999 789999999999999988765667899
Q ss_pred EcC-------------------CCccccccccccccCC--CCCeEEEEEeCcEEEeccceeEEEeCC--ceEEEE-EEcC
Q 016180 303 IDS-------------------DPTGSLELCYSFNSLS--QVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV-FKGI 358 (394)
Q Consensus 303 iDs-------------------~~~~~~~~c~~~~~~~--~~P~i~f~f~g~~~~l~~~~~~~~~~~--~~~C~~-i~~~ 358 (394)
||| ........+|..+|+. ++|+|+|+|+|+++.|++++|+++..+ ..+|++ |+..
T Consensus 215 iDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~ 294 (329)
T cd05485 215 ADTGTSLIAGPVDEIEKLNNAIGAKPIIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGI 294 (329)
T ss_pred EccCCcceeCCHHHHHHHHHHhCCccccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEEC
Confidence 999 1111112345555543 589999999999999999999998653 458986 7753
Q ss_pred C-----CCcceechhhhceeEEEEECCCCEEEEee
Q 016180 359 T-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 388 (394)
Q Consensus 359 ~-----~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 388 (394)
+ ++.||||++|||++|+|||++++|||||+
T Consensus 295 ~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 295 DIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 2 35799999999999999999999999985
No 13
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=5.8e-50 Score=395.41 Aligned_cols=273 Identities=21% Similarity=0.391 Sum_probs=223.0
Q ss_pred ccccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCC
Q 016180 81 QADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKS 160 (394)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~ 160 (394)
.+..+..+.+|+++|+||||||+|.|+|||||+++||+|..|....| +.++.|||++|+|++..+
T Consensus 130 v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C--~~~~~yd~s~SsT~~~~~------------- 194 (453)
T PTZ00147 130 VELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGC--ETKNLYDSSKSKTYEKDG------------- 194 (453)
T ss_pred eeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccc--cCCCccCCccCcceEECC-------------
Confidence 34446788999999999999999999999999999999999984456 577899999999999887
Q ss_pred CCCCCceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCC---CC-CCCcceeeecCCCCCch-----
Q 016180 161 CSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG---LF-NSKTTGIVGLGGGDISL----- 231 (394)
Q Consensus 161 c~~~~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GIlGLg~~~~sl----- 231 (394)
+.|++.|++|+.. |.+++|+|++|+. +++ +.|+++....+ .+ ...+|||||||++.++.
T Consensus 195 -----~~f~i~Yg~Gsvs-G~~~~DtVtiG~~-----~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p 262 (453)
T PTZ00147 195 -----TKVEMNYVSGTVS-GFFSKDLVTIGNL-----SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDP 262 (453)
T ss_pred -----CEEEEEeCCCCEE-EEEEEEEEEECCE-----EEE-EEEEEEEeccCcccccccccccceecccCCccccccCCC
Confidence 8999999999865 9999999999987 777 57888876654 13 45789999999987652
Q ss_pred -----hhhhhhccCCceEEeecCCCC--ceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEeccCCCcEE
Q 016180 232 -----ISQMRTTIAGKFSYCLVPVSS--TKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIV 302 (394)
Q Consensus 232 -----~~ql~~~~~~~Fs~~l~~~~~--g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~i 302 (394)
..| +.+.+++||+||.+.+. |+|+||| .+++.|+ +.|+|+. +..+|.|+++ +.+++.. .....+|
T Consensus 263 ~~~~L~~q-g~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~-l~y~pl~-~~~~W~V~l~-~~vg~~~--~~~~~aI 336 (453)
T PTZ00147 263 YVVELKNQ-NKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGP-LTYEKLN-HDLYWQVDLD-VHFGNVS--SEKANVI 336 (453)
T ss_pred HHHHHHHc-CCCCccEEEEEecCCCCCCeEEEECCcChhhcCCc-eEEEEcC-CCceEEEEEE-EEECCEe--cCceeEE
Confidence 234 56778999999987533 9999999 4456665 9999998 7889999998 5777654 3456899
Q ss_pred EcCC-------------------Cc------cccccccccccCCCCCeEEEEEeCcEEEeccceeEEEeCC--ceEEEE-
Q 016180 303 IDSD-------------------PT------GSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV- 354 (394)
Q Consensus 303 iDs~-------------------~~------~~~~~c~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~--~~~C~~- 354 (394)
+||+ .. .+...|+. ..+|+|+|+|+|..++|+|++|+.+..+ ...|++
T Consensus 337 iDSGTsli~lP~~~~~ai~~~l~~~~~~~~~~y~~~C~~----~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~ 412 (453)
T PTZ00147 337 VDSGTSVITVPTEFLNKFVESLDVFKVPFLPLYVTTCNN----TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLN 412 (453)
T ss_pred ECCCCchhcCCHHHHHHHHHHhCCeecCCCCeEEEeCCC----CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEE
Confidence 9991 00 01224443 3789999999999999999999976432 457986
Q ss_pred EEcCC--CCcceechhhhceeEEEEECCCCEEEEeeCC
Q 016180 355 FKGIT--NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD 390 (394)
Q Consensus 355 i~~~~--~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 390 (394)
|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 413 i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 413 IIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 87754 4589999999999999999999999999997
No 14
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.3e-49 Score=390.40 Aligned_cols=279 Identities=19% Similarity=0.378 Sum_probs=221.9
Q ss_pred cccccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCC
Q 016180 80 SQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK 159 (394)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~ 159 (394)
.....+..+.+|+++|.||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++..+
T Consensus 128 ~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C--~~~~~yd~s~SsT~~~~~------------ 193 (450)
T PTZ00013 128 VIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGC--SIKNLYDSSKSKSYEKDG------------ 193 (450)
T ss_pred ceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccc--ccCCCccCccCcccccCC------------
Confidence 344446778899999999999999999999999999999999985567 567899999999999887
Q ss_pred CCCCCCceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCC---CC-CCCcceeeecCCCCCc-----
Q 016180 160 SCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG---LF-NSKTTGIVGLGGGDIS----- 230 (394)
Q Consensus 160 ~c~~~~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GIlGLg~~~~s----- 230 (394)
+.|.+.||+|+. .|.+++|+|++|+. +++ +.|+++..... .+ ...+|||||||++.++
T Consensus 194 ------~~~~i~YG~Gsv-~G~~~~Dtv~iG~~-----~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 194 ------TKVDITYGSGTV-KGFFSKDLVTLGHL-----SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred ------cEEEEEECCceE-EEEEEEEEEEECCE-----EEc-cEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 899999999985 59999999999986 776 57888776542 23 4578999999998765
Q ss_pred -hhhhh---hhccCCceEEeecCCCC--ceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEeccCCCcEE
Q 016180 231 -LISQM---RTTIAGKFSYCLVPVSS--TKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIV 302 (394)
Q Consensus 231 -l~~ql---~~~~~~~Fs~~l~~~~~--g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~i 302 (394)
++.+| +.+.+++||+||.+.+. |+|+||| .+++.|+ +.|+|+. ...||.|+++ +.+|... .....+|
T Consensus 261 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~-L~y~pv~-~~~yW~I~l~-v~~G~~~--~~~~~aI 335 (450)
T PTZ00013 261 PIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGN-ITYEKLN-HDLYWQIDLD-VHFGKQT--MQKANVI 335 (450)
T ss_pred CHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccc-eEEEEcC-cCceEEEEEE-EEECcee--ccccceE
Confidence 22333 55778999999986533 9999999 4456665 9999998 7889999998 6776544 3456799
Q ss_pred EcCC-------------------Cc-cccccccccccC-CCCCeEEEEEeCcEEEeccceeEEEeC--CceEEEE-EEcC
Q 016180 303 IDSD-------------------PT-GSLELCYSFNSL-SQVPEVTIHFRGADVKLSRSNFFVKVS--EDIVCSV-FKGI 358 (394)
Q Consensus 303 iDs~-------------------~~-~~~~~c~~~~~~-~~~P~i~f~f~g~~~~l~~~~~~~~~~--~~~~C~~-i~~~ 358 (394)
+||+ .. ......|..+|+ ..+|+|+|+|+|.+++|+|++|+.+.. ++..|+. |.+.
T Consensus 336 lDSGTSli~lP~~~~~~i~~~l~~~~~~~~~~y~~~C~~~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~ 415 (450)
T PTZ00013 336 VDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPV 415 (450)
T ss_pred ECCCCccccCCHHHHHHHHHHhCCeecCCCCeEEeecCCCCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEEC
Confidence 9991 00 001111222333 268999999999999999999987532 3468976 7765
Q ss_pred C--CCcceechhhhceeEEEEECCCCEEEEeeCC
Q 016180 359 T--NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD 390 (394)
Q Consensus 359 ~--~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~ 390 (394)
+ .+.||||++|||++|+|||++++|||||+++
T Consensus 416 ~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 416 DIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 4 4579999999999999999999999999986
No 15
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.3e-49 Score=373.76 Aligned_cols=253 Identities=42% Similarity=0.846 Sum_probs=210.3
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceee
Q 016180 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (394)
Q Consensus 90 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (394)
+|+++|.||||||++.|+|||||+++||+|. .| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-----~c--------------------------------------~~~~ 37 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-----PC--------------------------------------CLYQ 37 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-----CC--------------------------------------Ceee
Confidence 5999999999999999999999999999765 33 6789
Q ss_pred EecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCCCCCcceeeecCCCCCchhhhhhhccCCceEEeecC
Q 016180 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVP 249 (394)
Q Consensus 170 ~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~sl~~ql~~~~~~~Fs~~l~~ 249 (394)
+.|++|+.++|.+++|+|+||+.. .++++.|||+...++.+ ...+||||||++..++++|+....+++||+||.+
T Consensus 38 i~Yg~Gs~~~G~~~~D~v~ig~~~----~~~~~~Fg~~~~~~~~~-~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~ 112 (299)
T cd05472 38 VSYGDGSYTTGDLATDTLTLGSSD----VVPGFAFGCGHDNEGLF-GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPD 112 (299)
T ss_pred eEeCCCceEEEEEEEEEEEeCCCC----ccCCEEEECCccCCCcc-CCCCEEEECCCCcchHHHHhhHhhcCceEEEccC
Confidence 999999987799999999999741 67899999999887655 4789999999999999999876677999999987
Q ss_pred CC---CceEEeCCCCccCCCCeeeeecc-C--CCCceEEEEEEEEEccEEec-----cCCCcEEEcC-------------
Q 016180 250 VS---STKINFGTNGIVSGPGVVSTPLT-K--AKTFYVLTIDAISVGNQRLG-----VSTPDIVIDS------------- 305 (394)
Q Consensus 250 ~~---~g~l~fGg~~~~~g~~~~~~p~~-~--~~~~w~v~l~~i~v~~~~~~-----~~~~~~iiDs------------- 305 (394)
.. .|+|+|||.+...++ +.|+|++ + ...+|.|+|++|+||++.+. .....+|+||
T Consensus 113 ~~~~~~G~l~fGg~d~~~g~-l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~ 191 (299)
T cd05472 113 RSSSSSGYLSFGAAASVPAG-ASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYA 191 (299)
T ss_pred CCCCCCceEEeCCccccCCC-ceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHH
Confidence 43 399999994333554 9999998 3 24799999999999998873 2356899999
Q ss_pred ----------C-----Cc-cccccccccccC--CCCCeEEEEEe-CcEEEeccceeEEEe-CCceEEEEEEcCC--CCcc
Q 016180 306 ----------D-----PT-GSLELCYSFNSL--SQVPEVTIHFR-GADVKLSRSNFFVKV-SEDIVCSVFKGIT--NSVP 363 (394)
Q Consensus 306 ----------~-----~~-~~~~~c~~~~~~--~~~P~i~f~f~-g~~~~l~~~~~~~~~-~~~~~C~~i~~~~--~~~~ 363 (394)
. .. ..+..||..++. ..+|+|+|+|+ |++++|++++|++.. ..+..|+++...+ .+.|
T Consensus 192 ~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~ 271 (299)
T cd05472 192 ALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLS 271 (299)
T ss_pred HHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCE
Confidence 0 00 112358876443 37999999998 799999999999843 3467899977653 4679
Q ss_pred eechhhhceeEEEEECCCCEEEEeeCCC
Q 016180 364 IYGNIMQTNFLVGYDIEQQTVSFKPTDC 391 (394)
Q Consensus 364 ilG~~fl~~~y~vfD~~~~rigfa~~~C 391 (394)
|||+.|||++|+|||++++|||||+++|
T Consensus 272 ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 272 IIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEchHHccceEEEEECCCCEEeEecCCC
Confidence 9999999999999999999999999999
No 16
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.1e-48 Score=366.51 Aligned_cols=257 Identities=32% Similarity=0.561 Sum_probs=210.5
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeEecC-CCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCce
Q 016180 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCE-PCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ 167 (394)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~-~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (394)
++|+++|.||||||++.|+|||||+++||+|. +|. .| . |.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~--~c-------------------~------------------c~ 41 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT--GC-------------------Q------------------CD 41 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC--CC-------------------c------------------Cc
Confidence 57999999999999999999999999999984 665 55 1 89
Q ss_pred eeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCC---CCCcceeeecCCCCCchhhhhhhc--cCCc
Q 016180 168 YSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF---NSKTTGIVGLGGGDISLISQMRTT--IAGK 242 (394)
Q Consensus 168 ~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~---~~~~~GIlGLg~~~~sl~~ql~~~--~~~~ 242 (394)
|.+.|++|+.+.|.+++|+|+++..++. ..++++.|||+....+.+ ....+||||||++..++++||... .+++
T Consensus 42 ~~i~Ygd~~~~~G~~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~ 120 (273)
T cd05475 42 YEIEYADGGSSMGVLVTDIFSLKLTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNV 120 (273)
T ss_pred cEeEeCCCCceEEEEEEEEEEEeecCCC-cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCce
Confidence 9999998877789999999999764332 267899999998776532 457899999999999999987642 2789
Q ss_pred eEEeecCCCCceEEeCCCCccCCCCeeeeecc-C-CCCceEEEEEEEEEccEEeccCCCcEEEcCCCccccccccccccC
Q 016180 243 FSYCLVPVSSTKINFGTNGIVSGPGVVSTPLT-K-AKTFYVLTIDAISVGNQRLGVSTPDIVIDSDPTGSLELCYSFNSL 320 (394)
Q Consensus 243 Fs~~l~~~~~g~l~fGg~~~~~g~~~~~~p~~-~-~~~~w~v~l~~i~v~~~~~~~~~~~~iiDs~~~~~~~~c~~~~~~ 320 (394)
||+||.+...|.|+||+..++.++ +.|+|+. + ...+|.|++.+|+||++.+......+||||....... +.+
T Consensus 121 Fs~~l~~~~~g~l~~G~~~~~~g~-i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~l-----p~~ 194 (273)
T cd05475 121 IGHCLSSNGGGFLFFGDDLVPSSG-VTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYF-----NAQ 194 (273)
T ss_pred EEEEccCCCCeEEEECCCCCCCCC-eeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEc-----CCc
Confidence 999998754499999986555554 9999999 2 2489999999999999876556678999994332111 111
Q ss_pred CCCCeEEEEEeC----cEEEeccceeEEEeCCceEEEEEEcCC----CCcceechhhhceeEEEEECCCCEEEEeeCCC
Q 016180 321 SQVPEVTIHFRG----ADVKLSRSNFFVKVSEDIVCSVFKGIT----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDC 391 (394)
Q Consensus 321 ~~~P~i~f~f~g----~~~~l~~~~~~~~~~~~~~C~~i~~~~----~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~C 391 (394)
.-+|+|+|+|++ ++++|||++|++...++..|+++.... .+.||||+.|||++|+|||++++|||||+++|
T Consensus 195 ~y~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 195 AYFKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred cccccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 127999999987 699999999999866667899965432 35799999999999999999999999999999
No 17
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=4e-47 Score=368.06 Aligned_cols=277 Identities=24% Similarity=0.439 Sum_probs=221.4
Q ss_pred ecCCCce-EEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCC------------CCCC
Q 016180 97 IGTPPTE-RLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK------------SCSG 163 (394)
Q Consensus 97 iGtP~q~-~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~------------~c~~ 163 (394)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|...... .|.+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~----------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~ 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA----------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC----------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC
Confidence 5888877 999999999999997764 3588999999999999865432 5655
Q ss_pred CCceeeEe-cCCCCeeeeEEEEEEEEecCCCCCc---ccCCceEEEeEeecCC-CCCCCcceeeecCCCCCchhhhhhhc
Q 016180 164 VNCQYSVS-YGDGSFSNGNLATETVTLGSTTGQA---VALPGITFGCGTNNGG-LFNSKTTGIVGLGGGDISLISQMRTT 238 (394)
Q Consensus 164 ~~~~~~~~-Yg~gs~~~G~~~~D~v~~g~~~~~~---~~~~~~~fg~~~~~~~-~~~~~~~GIlGLg~~~~sl~~ql~~~ 238 (394)
+.|.|... |++|+.+.|.+++|+|+|+..++.. ++++++.|||+..... .+...+|||||||++.+|+++|+...
T Consensus 66 ~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 66 NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhh
Confidence 57888655 7899888899999999998755432 4689999999988643 23345899999999999999997653
Q ss_pred --cCCceEEeecCCC--CceEEeCCCC--ccC-----CCCeeeeecc-C--CCCceEEEEEEEEEccEEec---------
Q 016180 239 --IAGKFSYCLVPVS--STKINFGTNG--IVS-----GPGVVSTPLT-K--AKTFYVLTIDAISVGNQRLG--------- 295 (394)
Q Consensus 239 --~~~~Fs~~l~~~~--~g~l~fGg~~--~~~-----g~~~~~~p~~-~--~~~~w~v~l~~i~v~~~~~~--------- 295 (394)
.+++||+||.+.. .|+|+||+.+ .+. ..++.|+||+ + ...+|+|+|++|+||++.+.
T Consensus 146 ~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 146 FGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred cCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccc
Confidence 3589999998753 2999999933 221 1359999999 3 34799999999999999772
Q ss_pred -cCCCcEEEcC-----------------------C--Cc-----cccccccccc----c--CCCCCeEEEEEeC--cEEE
Q 016180 296 -VSTPDIVIDS-----------------------D--PT-----GSLELCYSFN----S--LSQVPEVTIHFRG--ADVK 336 (394)
Q Consensus 296 -~~~~~~iiDs-----------------------~--~~-----~~~~~c~~~~----~--~~~~P~i~f~f~g--~~~~ 336 (394)
.+..++|||| . .. ...+.||... + ...+|+|+|+|+| ++|+
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~ 305 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWT 305 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEE
Confidence 2346899998 0 00 0125898752 1 2479999999986 9999
Q ss_pred eccceeEEEeCCceEEEEEEcCC---CCcceechhhhceeEEEEECCCCEEEEeeC
Q 016180 337 LSRSNFFVKVSEDIVCSVFKGIT---NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 389 (394)
Q Consensus 337 l~~~~~~~~~~~~~~C~~i~~~~---~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 389 (394)
|+|++|+++..++..|++|.+.+ ...||||+.|||++|++||++++|||||+.
T Consensus 306 l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 306 IFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999987777899988764 357999999999999999999999999974
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3e-47 Score=371.16 Aligned_cols=274 Identities=25% Similarity=0.435 Sum_probs=209.5
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCcee
Q 016180 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (394)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (394)
..|+++|.||||+|+|.|+|||||+++||+|.+|. +.++.|||++|+|++..+ |.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~------~~~~~f~~~~SsT~~~~~------------------~~~ 57 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP------FIHTYFHRELSSTYRDLG------------------KGV 57 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc------cccccCCchhCcCcccCC------------------ceE
Confidence 36999999999999999999999999999998774 346789999999999987 999
Q ss_pred eEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCC--CCCcceeeecCCCCC------------chhhh
Q 016180 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGLGGGDI------------SLISQ 234 (394)
Q Consensus 169 ~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GIlGLg~~~~------------sl~~q 234 (394)
++.|++|+.. |.+++|+|+||+... ..+ .+.|++.....+.| ....+||||||++.+ ++++|
T Consensus 58 ~i~Yg~Gs~~-G~~~~D~v~ig~~~~--~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q 133 (364)
T cd05473 58 TVPYTQGSWE-GELGTDLVSIPKGPN--VTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQ 133 (364)
T ss_pred EEEECcceEE-EEEEEEEEEECCCCc--cce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhc
Confidence 9999999875 999999999986310 011 13355655544433 246899999999876 35556
Q ss_pred hhhccCCceEEeecC---------C--CCceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEecc-----
Q 016180 235 MRTTIAGKFSYCLVP---------V--SSTKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGV----- 296 (394)
Q Consensus 235 l~~~~~~~Fs~~l~~---------~--~~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~----- 296 (394)
+.+ .++||++|.. . ..|+|+||| .+++.|+ +.|+|+. ...+|.|+|++|+|+++.+..
T Consensus 134 -~~~-~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~-l~~~p~~-~~~~~~v~l~~i~vg~~~~~~~~~~~ 209 (364)
T cd05473 134 -TGI-PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGD-IWYTPIR-EEWYYEVIILKLEVGGQSLNLDCKEY 209 (364)
T ss_pred -cCC-ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCC-ceEEecC-cceeEEEEEEEEEECCEecccccccc
Confidence 333 5799998842 1 129999999 3456655 9999999 778999999999999987731
Q ss_pred CCCcEEEcC--------------------CC-----------ccccccccccccC--CCCCeEEEEEeC------cEEEe
Q 016180 297 STPDIVIDS--------------------DP-----------TGSLELCYSFNSL--SQVPEVTIHFRG------ADVKL 337 (394)
Q Consensus 297 ~~~~~iiDs--------------------~~-----------~~~~~~c~~~~~~--~~~P~i~f~f~g------~~~~l 337 (394)
....+|||| .. ......|+..... ..+|+|+|+|+| .+++|
T Consensus 210 ~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l 289 (364)
T cd05473 210 NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITI 289 (364)
T ss_pred cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEE
Confidence 124699999 00 0012357654321 158999999976 36899
Q ss_pred ccceeEEEeC---CceEEEEEEcC-CCCcceechhhhceeEEEEECCCCEEEEeeCCCCCC
Q 016180 338 SRSNFFVKVS---EDIVCSVFKGI-TNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTKQ 394 (394)
Q Consensus 338 ~~~~~~~~~~---~~~~C~~i~~~-~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~C~~~ 394 (394)
+|++|+.... .+..|+++... ..+.||||+.|||++|+|||++++|||||+++|...
T Consensus 290 ~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 290 LPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred CHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 9999988643 24579763222 246799999999999999999999999999999863
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.7e-46 Score=350.41 Aligned_cols=244 Identities=47% Similarity=0.829 Sum_probs=205.2
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceee
Q 016180 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (394)
Q Consensus 90 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (394)
+|+++|+||||||++.|+|||||+++||+| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~----------------------------------------------~~~~ 34 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC----------------------------------------------CSYE 34 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC----------------------------------------------CceE
Confidence 599999999999999999999999999954 4578
Q ss_pred EecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCC-CCCcceeeecCCCCCchhhhhhhccCCceEEeec
Q 016180 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLV 248 (394)
Q Consensus 170 ~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GIlGLg~~~~sl~~ql~~~~~~~Fs~~l~ 248 (394)
+.|++|+...|.+++|+|+|++.+ ..++++.|||+....+ + ....+||||||+...|+++|+.... ++||+||.
T Consensus 35 ~~Y~dg~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~ 109 (265)
T cd05476 35 YSYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLV 109 (265)
T ss_pred eEeCCCceeeeeEEEEEEEecCCC---CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc-CeeEEEcc
Confidence 899998888899999999999852 2578999999999876 5 6789999999999999999986544 79999998
Q ss_pred CCC----CceEEeCC-CCccCCCCeeeeecc-C--CCCceEEEEEEEEEccEEec----------cCCCcEEEcCCCccc
Q 016180 249 PVS----STKINFGT-NGIVSGPGVVSTPLT-K--AKTFYVLTIDAISVGNQRLG----------VSTPDIVIDSDPTGS 310 (394)
Q Consensus 249 ~~~----~g~l~fGg-~~~~~g~~~~~~p~~-~--~~~~w~v~l~~i~v~~~~~~----------~~~~~~iiDs~~~~~ 310 (394)
+.. .|+|+||+ +..+.+ ++.|+|++ + ...+|.|+|++|+|+++.+. .....+|+||.....
T Consensus 110 ~~~~~~~~G~l~fGg~d~~~~~-~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~ 188 (265)
T cd05476 110 PHDDTGGSSPLILGDAADLGGS-GVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLT 188 (265)
T ss_pred CCCCCCCCCeEEECCcccccCC-CceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcce
Confidence 742 29999999 333444 49999999 3 36899999999999998762 356789999954322
Q ss_pred cccccccccCCCCCeEEEEEe-CcEEEeccceeEEEeCCceEEEEEEcC-CCCcceechhhhceeEEEEECCCCEEEEee
Q 016180 311 LELCYSFNSLSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIVCSVFKGI-TNSVPIYGNIMQTNFLVGYDIEQQTVSFKP 388 (394)
Q Consensus 311 ~~~c~~~~~~~~~P~i~f~f~-g~~~~l~~~~~~~~~~~~~~C~~i~~~-~~~~~ilG~~fl~~~y~vfD~~~~rigfa~ 388 (394)
..+=. .+|+|+|+|+ |+++.+++++|+++..++..|+++... ..+.||||++|||++|++||++++|||||+
T Consensus 189 ~lp~~------~~P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~ 262 (265)
T cd05476 189 YLPDP------AYPDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAP 262 (265)
T ss_pred EcCcc------ccCCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeec
Confidence 11111 2399999999 799999999999976667799997765 367899999999999999999999999999
Q ss_pred CCC
Q 016180 389 TDC 391 (394)
Q Consensus 389 ~~C 391 (394)
++|
T Consensus 263 ~~C 265 (265)
T cd05476 263 ADC 265 (265)
T ss_pred CCC
Confidence 999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=7.6e-46 Score=348.43 Aligned_cols=242 Identities=26% Similarity=0.426 Sum_probs=199.5
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceeeE
Q 016180 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSV 170 (394)
Q Consensus 91 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 170 (394)
|+++|+||||||++.|+|||||+++||+|..|. .|..+.++.||+++|+|++... .+.|.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--~~~~~~~~~y~~~~Sst~~~~~-----------------~~~~~i 61 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--AAQQGGHKLYDPSKSSTAKLLP-----------------GATWSI 61 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--chhhccCCcCCCccCccceecC-----------------CcEEEE
Confidence 899999999999999999999999999999998 7766678889999999998753 189999
Q ss_pred ecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCC-C-CCCcceeeecCCCCCchh---------hhhhh-c
Q 016180 171 SYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDISLI---------SQMRT-T 238 (394)
Q Consensus 171 ~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GIlGLg~~~~sl~---------~ql~~-~ 238 (394)
.|++|+...|.+++|+|+||+. +++++.||+++...+. + ....+||||||++..+.. .++.. .
T Consensus 62 ~Y~~G~~~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 62 SYGDGSSASGIVYTDTVSIGGV-----EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EeCCCCeEEEEEEEEEEEECCE-----EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 9999986679999999999987 8999999999988763 3 568999999999866532 22211 1
Q ss_pred cCCceEEeecCCCCceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccEEe-ccCCCcEEEcCC---------
Q 016180 239 IAGKFSYCLVPVSSTKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRL-GVSTPDIVIDSD--------- 306 (394)
Q Consensus 239 ~~~~Fs~~l~~~~~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~-~~~~~~~iiDs~--------- 306 (394)
.++.||+||.+...|+|+||| .+++.|+ +.|+|+.+...+|.|++++|+|+++.. ......+||||+
T Consensus 137 ~~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~-l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 137 DAPLFTADLRKAAPGFYTFGYIDESKYKGE-ISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred cCceEEEEecCCCCcEEEEeccChHHcCCc-eEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 258999999875459999999 3456665 999999822789999999999999743 355678999991
Q ss_pred ----------Cc--cccccccccccCCCCCeEEEEEeCcEEEeccceeEEEeCCceEEEEEEcCCCCcceechhhhceeE
Q 016180 307 ----------PT--GSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFL 374 (394)
Q Consensus 307 ----------~~--~~~~~c~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG~~fl~~~y 374 (394)
.. .....+|..+|+..+|+|+|+| .||||++|||++|
T Consensus 216 ~~~~l~~~l~g~~~~~~~~~~~~~C~~~~P~i~f~~-------------------------------~~ilGd~fl~~~y 264 (278)
T cd06097 216 IVEAYYSQVPGAYYDSEYGGWVFPCDTTLPDLSFAV-------------------------------FSILGDVFLKAQY 264 (278)
T ss_pred HHHHHHHhCcCCcccCCCCEEEEECCCCCCCEEEEE-------------------------------EEEEcchhhCcee
Confidence 01 1123456667776689999998 6999999999999
Q ss_pred EEEECCCCEEEEee
Q 016180 375 VGYDIEQQTVSFKP 388 (394)
Q Consensus 375 ~vfD~~~~rigfa~ 388 (394)
+|||++++|||||+
T Consensus 265 ~vfD~~~~~ig~A~ 278 (278)
T cd06097 265 VVFDVGGPKLGFAP 278 (278)
T ss_pred EEEcCCCceeeecC
Confidence 99999999999996
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=4.5e-45 Score=349.28 Aligned_cols=272 Identities=29% Similarity=0.538 Sum_probs=223.5
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCC-CCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCcee
Q 016180 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQC-YMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (394)
Q Consensus 90 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C-~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (394)
+|+++|.||||+|++.|++||||+++||++..|. .| ....+..|++++|+|++... +.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~--~~~~~~~~~~y~~~~S~t~~~~~------------------~~~ 60 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCN--SCSSCASSGFYNPSKSSTFSNQG------------------KPF 60 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTEC--SHTHHCTSC-BBGGGSTTEEEEE------------------EEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccc--cccccccccccccccccccccce------------------eee
Confidence 5999999999999999999999999999999998 44 33567899999999999887 899
Q ss_pred eEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCC-C-CCCcceeeecCCCCC-------chhhhh---h
Q 016180 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDI-------SLISQM---R 236 (394)
Q Consensus 169 ~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GIlGLg~~~~-------sl~~ql---~ 236 (394)
.+.|++|+ .+|.++.|+|+|++. .++++.||.+....+. + ....+||||||++.. +++.+| +
T Consensus 61 ~~~y~~g~-~~G~~~~D~v~ig~~-----~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 61 SISYGDGS-VSGNLVSDTVSIGGL-----TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp EEEETTEE-EEEEEEEEEEEETTE-----EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred eeeccCcc-cccccccceEeeeec-----cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhc
Confidence 99999999 669999999999997 8999999999997553 3 578999999997532 344443 5
Q ss_pred hccCCceEEeecCCCC--ceEEeCC--CCccCCCCeeeeeccCCCCceEEEEEEEEEccE-EeccCCCcEEEcCC-----
Q 016180 237 TTIAGKFSYCLVPVSS--TKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQ-RLGVSTPDIVIDSD----- 306 (394)
Q Consensus 237 ~~~~~~Fs~~l~~~~~--g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~-~~~~~~~~~iiDs~----- 306 (394)
.+.+++||++|.+.+. |.|+||| .+++.|+ +.|+|+. ...+|.+.+++|.++++ ........+++||.
T Consensus 135 ~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~-~~~~~~~-~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~ 212 (317)
T PF00026_consen 135 LISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGD-LVWVPLV-SSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIY 212 (317)
T ss_dssp SSSSSEEEEEEESTTSSEEEEEESSEEGGGEESE-EEEEEBS-STTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEE
T ss_pred cccccccceeeeecccccchheeeccccccccCc-eeccCcc-cccccccccccccccccccccccceeeeccccccccc
Confidence 5788999999999863 9999999 4566665 9999999 89999999999999998 43444567999991
Q ss_pred -------------CccccccccccccCC--CCCeEEEEEeCcEEEeccceeEEEeCCc--eEEEE-EEc----CCCCcce
Q 016180 307 -------------PTGSLELCYSFNSLS--QVPEVTIHFRGADVKLSRSNFFVKVSED--IVCSV-FKG----ITNSVPI 364 (394)
Q Consensus 307 -------------~~~~~~~c~~~~~~~--~~P~i~f~f~g~~~~l~~~~~~~~~~~~--~~C~~-i~~----~~~~~~i 364 (394)
........+..+|+. .+|.++|+|++.+++|||++|+.+.... ..|+. |.+ .....||
T Consensus 213 lp~~~~~~i~~~l~~~~~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~i 292 (317)
T PF00026_consen 213 LPRSIFDAIIKALGGSYSDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWI 292 (317)
T ss_dssp EEHHHHHHHHHHHTTEEECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEE
T ss_pred ccchhhHHHHhhhcccccceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccccccCCceE
Confidence 011111344445543 5899999999999999999999987653 48987 877 2267899
Q ss_pred echhhhceeEEEEECCCCEEEEeeC
Q 016180 365 YGNIMQTNFLVGYDIEQQTVSFKPT 389 (394)
Q Consensus 365 lG~~fl~~~y~vfD~~~~rigfa~~ 389 (394)
||.+|||++|++||.+++|||||+|
T Consensus 293 LG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 293 LGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ecHHHhhceEEEEeCCCCEEEEecC
Confidence 9999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=7.5e-43 Score=330.93 Aligned_cols=237 Identities=25% Similarity=0.435 Sum_probs=196.1
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceee
Q 016180 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (394)
Q Consensus 90 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (394)
.|+++|.||||+|++.|++||||+++||+ .|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~------------------------------------------------~~~ 33 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP------------------------------------------------DFS 33 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee------------------------------------------------eeE
Confidence 69999999999999999999999999994 357
Q ss_pred EecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCCCCCcceeeecCCCCC-----------chhhhhh--
Q 016180 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDI-----------SLISQMR-- 236 (394)
Q Consensus 170 ~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~-----------sl~~ql~-- 236 (394)
+.|++|+...|.+++|+|++++. .++++.|||++.. ...+||||||++.. +++.||.
T Consensus 34 ~~Y~~g~~~~G~~~~D~v~~g~~-----~~~~~~fg~~~~~-----~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~ 103 (295)
T cd05474 34 ISYGDGTSASGTWGTDTVSIGGA-----TVKNLQFAVANST-----SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQ 103 (295)
T ss_pred EEeccCCcEEEEEEEEEEEECCe-----EecceEEEEEecC-----CCCcceeeECCCCCcccccCCCcCCCHHHHHHHC
Confidence 88999777779999999999987 8999999999984 35789999999876 4666664
Q ss_pred -hccCCceEEeecCCCC--ceEEeCC--CCccCCCCeeeeecc-CC----CCceEEEEEEEEEccEEe----ccCCCcEE
Q 016180 237 -TTIAGKFSYCLVPVSS--TKINFGT--NGIVSGPGVVSTPLT-KA----KTFYVLTIDAISVGNQRL----GVSTPDIV 302 (394)
Q Consensus 237 -~~~~~~Fs~~l~~~~~--g~l~fGg--~~~~~g~~~~~~p~~-~~----~~~w~v~l~~i~v~~~~~----~~~~~~~i 302 (394)
.+.++.||+||.+.+. |.|+||| .+++.++ +.|+|+. +. ..+|.|++++|+++++.+ ......+|
T Consensus 104 g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~-~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~i 182 (295)
T cd05474 104 GLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGD-LVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPAL 182 (295)
T ss_pred CcccceEEEEEeCCCCCCceeEEEeeeccceeece-eEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEE
Confidence 3567999999998532 9999999 3456655 9999999 32 279999999999999874 35567899
Q ss_pred EcC-------------------------CCccccccccccccCCCCCeEEEEEeCcEEEeccceeEEEeC----CceEEE
Q 016180 303 IDS-------------------------DPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVS----EDIVCS 353 (394)
Q Consensus 303 iDs-------------------------~~~~~~~~c~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~----~~~~C~ 353 (394)
||| ....+...|+... . |+|+|+|+|++++||+++|+++.. .+..|+
T Consensus 183 iDSGt~~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~C~~~~---~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~ 258 (295)
T cd05474 183 LDSGTTLTYLPSDIVDAIAKQLGATYDSDEGLYVVDCDAKD---D-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACY 258 (295)
T ss_pred ECCCCccEeCCHHHHHHHHHHhCCEEcCCCcEEEEeCCCCC---C-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeE
Confidence 999 0011233454432 3 999999999999999999998764 256796
Q ss_pred -EEEcCCCCcceechhhhceeEEEEECCCCEEEEeeC
Q 016180 354 -VFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 389 (394)
Q Consensus 354 -~i~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 389 (394)
+|++.+.+.||||++|||++|++||.+++|||||++
T Consensus 259 ~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 259 LGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 588875578999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.9e-40 Score=309.92 Aligned_cols=240 Identities=33% Similarity=0.640 Sum_probs=197.6
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCC--CCCCCCCcccccCCCCccccCCCCCCCCCCCcee
Q 016180 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPL--FDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (394)
Q Consensus 91 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~--y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (394)
|+++|.||||+|++.|++||||+++||+|..|. .|..+.... |++..|+++.... |.|
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~--~~~~~~~~~~~~~~~~s~~~~~~~------------------~~~ 60 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT--SCSCQKHPRFKYDSSKSSTYKDTG------------------CTF 60 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC--ccccccCCCCccCccCCceeecCC------------------CEE
Confidence 889999999999999999999999999999998 554444444 7888888887765 999
Q ss_pred eEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCC-CCCcceeeecCCCC------Cchhhhhhh---c
Q 016180 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGD------ISLISQMRT---T 238 (394)
Q Consensus 169 ~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GIlGLg~~~------~sl~~ql~~---~ 238 (394)
++.|++|+.. |.++.|+|++++. .++++.|||++.....+ ....+||||||+.. .+++.||.. +
T Consensus 61 ~~~Y~~g~~~-g~~~~D~v~~~~~-----~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i 134 (283)
T cd05471 61 SITYGDGSVT-GGLGTDTVTIGGL-----TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLI 134 (283)
T ss_pred EEEECCCeEE-EEEEEeEEEECCE-----EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCC
Confidence 9999999776 9999999999997 79999999999988644 57899999999988 677777654 5
Q ss_pred cCCceEEeecCC----CCceEEeCCCC--ccCCCCeeeeecc-CCCCceEEEEEEEEEccE--EeccCCCcEEEcCC---
Q 016180 239 IAGKFSYCLVPV----SSTKINFGTNG--IVSGPGVVSTPLT-KAKTFYVLTIDAISVGNQ--RLGVSTPDIVIDSD--- 306 (394)
Q Consensus 239 ~~~~Fs~~l~~~----~~g~l~fGg~~--~~~g~~~~~~p~~-~~~~~w~v~l~~i~v~~~--~~~~~~~~~iiDs~--- 306 (394)
.+++||+||.+. ..|.|+|||.+ ++.+ ++.|+|+. +...+|.|.+++|+|++. ........++|||.
T Consensus 135 ~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~-~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~ 213 (283)
T cd05471 135 SSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTG-DLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSL 213 (283)
T ss_pred CCCEEEEEEcCCCCCCCCCEEEEcccCccccCC-ceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCC
Confidence 789999999985 23999999932 3444 49999999 227899999999999996 44566788999991
Q ss_pred -----------------CccccccccccccC--CCCCeEEEEEeCcEEEeccceeEEEeCCceEEEEEEcCCCCcceech
Q 016180 307 -----------------PTGSLELCYSFNSL--SQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGN 367 (394)
Q Consensus 307 -----------------~~~~~~~c~~~~~~--~~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG~ 367 (394)
.......|+...|. ..+|+|+|+| .||||+
T Consensus 214 ~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~i~f~f-------------------------------~~ilG~ 262 (283)
T cd05471 214 IYLPSSVYDAILKALGAAVSSSDGGYGVDCSPCDTLPDITFTF-------------------------------LWILGD 262 (283)
T ss_pred EeCCHHHHHHHHHHhCCcccccCCcEEEeCcccCcCCCEEEEE-------------------------------EEEccH
Confidence 01111234443332 3789999999 689999
Q ss_pred hhhceeEEEEECCCCEEEEee
Q 016180 368 IMQTNFLVGYDIEQQTVSFKP 388 (394)
Q Consensus 368 ~fl~~~y~vfD~~~~rigfa~ 388 (394)
+|||++|++||++++|||||+
T Consensus 263 ~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 263 VFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred hhhhheEEEEeCCCCEEeecC
Confidence 999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=2.3e-31 Score=229.75 Aligned_cols=157 Identities=51% Similarity=0.918 Sum_probs=129.0
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCC--CC--CCCCc
Q 016180 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK--SC--SGVNC 166 (394)
Q Consensus 91 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~--~c--~~~~~ 166 (394)
|+++|.||||+|++.|++||||+++|++| ..+.|+|++|+||+.++|.++.|...+.. .| .++.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C-----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC-----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC-----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcc
Confidence 89999999999999999999999999977 34899999999999999999999877642 33 33489
Q ss_pred eeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCCCCCcceeeecCCCCCchhhhhhhccCCceEEe
Q 016180 167 QYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYC 246 (394)
Q Consensus 167 ~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~sl~~ql~~~~~~~Fs~~ 246 (394)
.|.+.|++++.+.|.+++|+|+++..+++...+.++.|||+....+.+ ...+||||||+.++||++||.....++||+|
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyC 148 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF-YGADGILGLGRGPLSLPSQLASSSGNKFSYC 148 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS-TTEEEEEE-SSSTTSHHHHHHHH--SEEEEE
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC-cCCCcccccCCCcccHHHHHHHhcCCeEEEE
Confidence 999999999999999999999999876555678899999999998755 5899999999999999999977788999999
Q ss_pred ecC-CCC--ceEEeCC
Q 016180 247 LVP-VSS--TKINFGT 259 (394)
Q Consensus 247 l~~-~~~--g~l~fGg 259 (394)
|.+ ... |.|+||+
T Consensus 149 L~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 149 LPSSSPSSSGFLSFGD 164 (164)
T ss_dssp B-S-SSSSEEEEEECS
T ss_pred CCCCCCCCCEEEEeCc
Confidence 999 222 9999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.92 E-value=9.7e-25 Score=175.78 Aligned_cols=106 Identities=40% Similarity=0.741 Sum_probs=94.9
Q ss_pred EEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCC-CCCCCCcccccCCCCccccCCCCCCCCCCCceeeEe
Q 016180 93 IRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLF-DPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVS 171 (394)
Q Consensus 93 ~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y-~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~ 171 (394)
++|.||||||++.|+|||||+++||+|..|. .|..+.++.| +|+.|++++... |.|.+.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--~~~~~~~~~~~~~~~sst~~~~~------------------~~~~~~ 60 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--SLAIYSHSSYDDPSASSTYSDNG------------------CTFSIT 60 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--CcccccccccCCcCCCCCCCCCC------------------cEEEEE
Confidence 4799999999999999999999999999998 5654566677 999999999876 999999
Q ss_pred cCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCC--CCCcceeeec
Q 016180 172 YGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGL 224 (394)
Q Consensus 172 Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GIlGL 224 (394)
|++|+.. |.++.|+|+|++. .++++.|||+....+.+ ....+|||||
T Consensus 61 Y~~g~~~-g~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 61 YGTGSLS-GGLSTDTVSIGDI-----EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred eCCCeEE-EEEEEEEEEECCE-----EECCEEEEEEEecCCccccccccccccCC
Confidence 9999866 9999999999987 89999999999998753 5689999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.75 E-value=7.8e-18 Score=145.11 Aligned_cols=110 Identities=37% Similarity=0.753 Sum_probs=88.3
Q ss_pred ceEEEEEEEEEccEEec---------cCCCcEEEcC-------------------------C-------Ccccccccccc
Q 016180 279 FYVLTIDAISVGNQRLG---------VSTPDIVIDS-------------------------D-------PTGSLELCYSF 317 (394)
Q Consensus 279 ~w~v~l~~i~v~~~~~~---------~~~~~~iiDs-------------------------~-------~~~~~~~c~~~ 317 (394)
+|.|+|.+|+||++++. .+..++|||| . .......||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 59999999999999981 2467899999 1 13456789998
Q ss_pred cc------CCCCCeEEEEEe-CcEEEeccceeEEEeCCceEEEEEEcC---CCCcceechhhhceeEEEEECCCCEEEEe
Q 016180 318 NS------LSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIVCSVFKGI---TNSVPIYGNIMQTNFLVGYDIEQQTVSFK 387 (394)
Q Consensus 318 ~~------~~~~P~i~f~f~-g~~~~l~~~~~~~~~~~~~~C~~i~~~---~~~~~ilG~~fl~~~y~vfD~~~~rigfa 387 (394)
.. ...+|+|+|+|. |++++|++++|++...++..|++|.+. ..+..|||+.+|++++++||++++||||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~ 160 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFA 160 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEe
Confidence 65 137999999999 689999999999999888999998877 37899999999999999999999999999
Q ss_pred e
Q 016180 388 P 388 (394)
Q Consensus 388 ~ 388 (394)
|
T Consensus 161 ~ 161 (161)
T PF14541_consen 161 P 161 (161)
T ss_dssp E
T ss_pred C
Confidence 7
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.16 E-value=5.9e-06 Score=64.03 Aligned_cols=94 Identities=14% Similarity=0.230 Sum_probs=67.5
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCcee
Q 016180 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (394)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (394)
+.|++++.|+ .+++.+++|||++.+|+...... .+ .. ... . ....
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~--~l-----~~-------~~~-~------------------~~~~ 45 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAE--RL-----GL-------PLT-L------------------GGKV 45 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--Hc-----CC-------Ccc-C------------------CCcE
Confidence 3589999999 79999999999999999664222 11 00 000 0 0455
Q ss_pred eEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCCCCCcceeeecCC
Q 016180 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGG 226 (394)
Q Consensus 169 ~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~ 226 (394)
.+..++|.........+.+++|+. .++++.+........ ..+||||+.+
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~ig~~-----~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQIGGI-----TLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEECCc-----EEeccEEEEeCCccc----CCceEeChHH
Confidence 677778877666777999999987 788888877655432 5799999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.00 E-value=0.003 Score=51.43 Aligned_cols=96 Identities=13% Similarity=0.195 Sum_probs=64.0
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCc
Q 016180 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNC 166 (394)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~ 166 (394)
.++.|++++.|. .+++.+++|||++.+-+...--. .- ..++.. .. .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~--~L------gl~~~~------~~------------------~ 53 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ--RL------GLDLNR------LG------------------Y 53 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--Hc------CCCccc------CC------------------c
Confidence 578899999998 78999999999999888443111 00 011110 00 2
Q ss_pred eeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCCCCCcceeeecCC
Q 016180 167 QYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGG 226 (394)
Q Consensus 167 ~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~ 226 (394)
...+.=+.|......+..|.+.+|+. .++|+.+.+..... ..+|+||+.+
T Consensus 54 ~~~~~ta~G~~~~~~~~l~~l~iG~~-----~~~nv~~~v~~~~~-----~~~~LLGm~f 103 (121)
T TIGR02281 54 TVTVSTANGQIKAARVTLDRVAIGGI-----VVNDVDAMVAEGGA-----LSESLLGMSF 103 (121)
T ss_pred eEEEEeCCCcEEEEEEEeCEEEECCE-----EEeCcEEEEeCCCc-----CCceEcCHHH
Confidence 23333345665546678999999998 88889877764321 2479999874
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.74 E-value=0.009 Score=45.28 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=55.4
Q ss_pred EEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceeeEec
Q 016180 93 IRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSY 172 (394)
Q Consensus 93 ~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~Y 172 (394)
+++.|+ .+++.+++|||++.+.+...-.. .. ...+.... ....+.-
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~--~l------~~~~~~~~------------------------~~~~~~~ 46 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK--KL------GLKPRPKS------------------------VPISVSG 46 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH--Hc------CCCCcCCc------------------------eeEEEEe
Confidence 467787 78999999999998888544322 00 00110000 1233333
Q ss_pred CCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeEeecCCCCCCCcceeeecC
Q 016180 173 GDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLG 225 (394)
Q Consensus 173 g~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg 225 (394)
.+|.........+.+++|+. .+.++.|-.... ....+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~ig~~-----~~~~~~~~v~~~-----~~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITIGGI-----TLKNVPFLVVDL-----GDPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEECCE-----EEEeEEEEEECC-----CCCCEEEeCCc
Confidence 44555546677778999987 777787766651 14678999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.41 E-value=0.24 Score=40.37 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=27.6
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeEecC
Q 016180 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCE 120 (394)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 120 (394)
....+++++.|+ ++++.+++|||++.+++...
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 345689999999 89999999999999998554
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.74 E-value=0.2 Score=38.22 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=25.5
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecCC
Q 016180 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEP 121 (394)
Q Consensus 91 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~ 121 (394)
|++++.|+ .+++.+.+||||+..++.-..
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 899999999999999996543
No 32
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.69 E-value=1 Score=32.81 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=29.3
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeEecCCC
Q 016180 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPC 122 (394)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c 122 (394)
..+.+++.+.|| .+.+.+++|||++...|....+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 457899999999 7999999999999998866543
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=84.96 E-value=3 Score=36.70 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=59.5
Q ss_pred ccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCC
Q 016180 85 IPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGV 164 (394)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~c~~~ 164 (394)
...+|-|+++..|- .|++..++|||-+.+-+.-+.-. .-.|+.+...
T Consensus 100 k~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~--------RlGid~~~l~----------------------- 146 (215)
T COG3577 100 KSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR--------RLGIDLNSLD----------------------- 146 (215)
T ss_pred ecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH--------HhCCCccccC-----------------------
Confidence 34678999999999 89999999999998888544221 1224433211
Q ss_pred CceeeEecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEEeE
Q 016180 165 NCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCG 207 (394)
Q Consensus 165 ~~~~~~~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg~~ 207 (394)
.++.+.-.+|....-.+-.|.|.||+. .++|+.--++
T Consensus 147 -y~~~v~TANG~~~AA~V~Ld~v~IG~I-----~~~nV~A~V~ 183 (215)
T COG3577 147 -YTITVSTANGRARAAPVTLDRVQIGGI-----RVKNVDAMVA 183 (215)
T ss_pred -CceEEEccCCccccceEEeeeEEEccE-----EEcCchhhee
Confidence 555666678887767899999999987 6666554333
No 34
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=81.30 E-value=2.3 Score=32.82 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=23.7
Q ss_pred EEEEEecCCCceEEEEEEcCCCceeEecCCC
Q 016180 92 LIRISIGTPPTERLAVADTGSDLIWTQCEPC 122 (394)
Q Consensus 92 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~c 122 (394)
+..|.|. .+++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 4677888 7899999999999998866533
No 35
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=80.13 E-value=5.5 Score=38.35 Aligned_cols=54 Identities=26% Similarity=0.525 Sum_probs=34.0
Q ss_pred ecCCCCeeeeEEEEEEEEecCCCCCcccCCceEEE----------eEeecCCC---CCCCcceeeecCCC
Q 016180 171 SYGDGSFSNGNLATETVTLGSTTGQAVALPGITFG----------CGTNNGGL---FNSKTTGIVGLGGG 227 (394)
Q Consensus 171 ~Yg~gs~~~G~~~~D~v~~g~~~~~~~~~~~~~fg----------~~~~~~~~---~~~~~~GIlGLg~~ 227 (394)
.|++|..| |-+.+-+|+||+.... .++=|.++ |...-... ....+.||||+|.-
T Consensus 83 ~F~sgytW-GsVr~AdV~igge~A~--~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASGYTW-GSVRTADVTIGGETAS--SIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCcccc-cceEEEEEEEcCeecc--ccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 57888888 9999999999987222 23333332 22111111 14568999999874
No 36
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=73.64 E-value=18 Score=29.84 Aligned_cols=30 Identities=20% Similarity=0.090 Sum_probs=27.3
Q ss_pred CCcceechhhhceeEEEEECCCCEEEEeeC
Q 016180 360 NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 389 (394)
Q Consensus 360 ~~~~ilG~~fl~~~y~vfD~~~~rigfa~~ 389 (394)
+-..|||-.||+.+..+-|..+++|-|...
T Consensus 103 ~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 103 GYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred ceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 457999999999999999999999999764
No 37
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=72.17 E-value=5.1 Score=30.39 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.1
Q ss_pred EEEecCCCceEEEEEEcCCCceeEecC
Q 016180 94 RISIGTPPTERLAVADTGSDLIWTQCE 120 (394)
Q Consensus 94 ~i~iGtP~q~~~v~~DTGSs~~wv~~~ 120 (394)
.+.|+ .|.+.+++|||.+++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999999543
No 38
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=70.18 E-value=5.6 Score=29.88 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=21.7
Q ss_pred EEEecCCCceEEEEEEcCCCceeEecCCC
Q 016180 94 RISIGTPPTERLAVADTGSDLIWTQCEPC 122 (394)
Q Consensus 94 ~i~iGtP~q~~~v~~DTGSs~~wv~~~~c 122 (394)
.+.|. .+++.+++|||.+.+-+.....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a 28 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLG 28 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHh
Confidence 45666 7899999999999999965533
No 39
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=58.69 E-value=13 Score=31.60 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeEecC
Q 016180 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCE 120 (394)
Q Consensus 90 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 120 (394)
.+.+.+. +-..++.++|||||+...+...
T Consensus 34 T~~v~l~--~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLN--CKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEe--ecCcEEEEEEeCCCccceeehh
Confidence 3555544 4489999999999999888554
No 40
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=57.32 E-value=12 Score=27.64 Aligned_cols=31 Identities=26% Similarity=0.132 Sum_probs=14.0
Q ss_pred CcchhhHHHHHHH-HHHhhccccccCCCceEEEE
Q 016180 1 MATFLSCVFILFF-LCFYVVSPIEAQTGGFSVEL 33 (394)
Q Consensus 1 M~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~l 33 (394)
|...++++-|+++ ++.+ .+|+++++.-++..
T Consensus 1 MaRRlwiLslLAVtLtVA--LAAPsQKsKRSVtv 32 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVA--LAAPSQKSKRSVTV 32 (100)
T ss_pred CchhhHHHHHHHHHHHHH--hhccccccccceee
Confidence 6555544444333 3333 34444544444443
No 41
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=43.03 E-value=27 Score=28.18 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=26.1
Q ss_pred EEcCCCCcceechhhhceeEEEEECCCCEEEE
Q 016180 355 FKGITNSVPIYGNIMQTNFLVGYDIEQQTVSF 386 (394)
Q Consensus 355 i~~~~~~~~ilG~~fl~~~y~vfD~~~~rigf 386 (394)
+.+......|||..||+.+-.+.|+.+.+|-|
T Consensus 93 Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 93 VLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 33433557899999999999999999998853
No 42
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=39.13 E-value=30 Score=21.47 Aligned_cols=16 Identities=38% Similarity=0.550 Sum_probs=7.0
Q ss_pred CcchhhHHHHHHHHHHh
Q 016180 1 MATFLSCVFILFFLCFY 17 (394)
Q Consensus 1 M~~~~~~~~l~~~~~~~ 17 (394)
|+ ++.+.+++++++++
T Consensus 1 Mk-~l~~a~~l~lLal~ 16 (36)
T PF08194_consen 1 MK-CLSLAFALLLLALA 16 (36)
T ss_pred Cc-eeHHHHHHHHHHHH
Confidence 65 44443444444433
No 43
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=37.40 E-value=59 Score=26.43 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=23.1
Q ss_pred CccEEEEEEecCCCceEEEEEEcCCCceeEecCC
Q 016180 88 NANYLIRISIGTPPTERLAVADTGSDLIWTQCEP 121 (394)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~ 121 (394)
....|+++.|+ .+++++.+|||...+-+..+-
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~ 53 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSC 53 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHH
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHH
Confidence 34689999999 899999999999998886543
No 44
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=32.45 E-value=1e+02 Score=24.42 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=27.3
Q ss_pred EEEecCCCCCcccCCceEEEeEeecCCCC-CCCcceeeecCCCCCc
Q 016180 186 TVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDIS 230 (394)
Q Consensus 186 ~v~~g~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GIlGLg~~~~s 230 (394)
.+.|... ..++..|--++..-+.+ +....-+.||+++.-.
T Consensus 54 ~~iINc~-----i~~~~~y~kas~~FhQWrD~R~~tVyGLnF~Sk~ 94 (111)
T cd01206 54 KAIINST-----ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEQ 94 (111)
T ss_pred EEEEecc-----ccCCcceeecccccccccccccceeeecccCCHH
Confidence 4455544 66677776666666666 5666799999997654
No 45
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=31.65 E-value=73 Score=29.44 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=22.8
Q ss_pred ccEEEE---EEecC---CCceEEEEEEcCCCceeEecC
Q 016180 89 ANYLIR---ISIGT---PPTERLAVADTGSDLIWTQCE 120 (394)
Q Consensus 89 ~~Y~~~---i~iGt---P~q~~~v~~DTGSs~~wv~~~ 120 (394)
..|.++ |+||. +.....+++|||++++.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 566655 58873 223457999999999999654
No 46
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=28.23 E-value=88 Score=28.67 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=14.7
Q ss_pred eEEEEEEcCCCceeEecC
Q 016180 103 ERLAVADTGSDLIWTQCE 120 (394)
Q Consensus 103 ~~~v~~DTGSs~~wv~~~ 120 (394)
...+++|||++++.++..
T Consensus 176 ~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCcEEEeCCCcceEcCcc
Confidence 356899999999999654
No 47
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=25.77 E-value=54 Score=24.99 Aligned_cols=18 Identities=17% Similarity=-0.069 Sum_probs=15.5
Q ss_pred ceEEEEEEcCCCceeEec
Q 016180 102 TERLAVADTGSDLIWTQC 119 (394)
Q Consensus 102 q~~~v~~DTGSs~~wv~~ 119 (394)
+++.+.+|||++..-++-
T Consensus 9 ~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 9 QSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eeEEEEEecCCEEEeccH
Confidence 899999999999777744
No 48
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=24.88 E-value=75 Score=28.99 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=25.6
Q ss_pred CccEEEE---EEecC-----CCceEEEEEEcCCCceeEecCCC
Q 016180 88 NANYLIR---ISIGT-----PPTERLAVADTGSDLIWTQCEPC 122 (394)
Q Consensus 88 ~~~Y~~~---i~iGt-----P~q~~~v~~DTGSs~~wv~~~~c 122 (394)
...|.+. |.||. ......+++|||++.+|++..-+
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 4556654 46775 24567899999999999987644
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=24.84 E-value=95 Score=24.31 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=18.7
Q ss_pred EEEEecCCCc----eEEEEEEcCCCcee
Q 016180 93 IRISIGTPPT----ERLAVADTGSDLIW 116 (394)
Q Consensus 93 ~~i~iGtP~q----~~~v~~DTGSs~~w 116 (394)
++|.|..|.| ++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 6788888733 67899999999664
No 50
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=24.78 E-value=72 Score=29.49 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=23.9
Q ss_pred CccEEEE---EEecC----CCceEEEEEEcCCCceeEecCC
Q 016180 88 NANYLIR---ISIGT----PPTERLAVADTGSDLIWTQCEP 121 (394)
Q Consensus 88 ~~~Y~~~---i~iGt----P~q~~~v~~DTGSs~~wv~~~~ 121 (394)
...|.++ |.||. ......+++|||++.+++|...
T Consensus 176 ~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~ 216 (278)
T cd06097 176 SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAI 216 (278)
T ss_pred CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHH
Confidence 4556554 46763 2356789999999999998653
No 51
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=23.06 E-value=88 Score=29.60 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=22.4
Q ss_pred ccEEEE---EEecCC-----CceEEEEEEcCCCceeEecC
Q 016180 89 ANYLIR---ISIGTP-----PTERLAVADTGSDLIWTQCE 120 (394)
Q Consensus 89 ~~Y~~~---i~iGtP-----~q~~~v~~DTGSs~~wv~~~ 120 (394)
..|.++ |.||.. .+...+++|||++++++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 445554 677742 23457999999999999764
Done!