Query 016181
Match_columns 394
No_of_seqs 166 out of 922
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.1E-53 3.9E-58 389.1 16.3 152 23-182 10-169 (174)
2 1ut7_A No apical meristem prot 100.0 6.2E-53 2.1E-57 383.1 14.9 153 23-183 12-167 (171)
3 1kdl_A YOPD protein; yersinia, 14.9 72 0.0025 20.5 1.5 22 365-386 5-26 (26)
4 1ldd_A APC2WHB, anaphase promo 13.4 94 0.0032 24.3 2.1 27 28-55 36-63 (74)
5 3nr5_A MAF1, repressor of RNA 8.5 1.2E+02 0.0042 27.0 1.4 14 62-75 119-132 (164)
6 3cpr_A Dihydrodipicolinate syn 8.2 1.1E+02 0.0037 29.1 1.0 19 27-46 117-135 (304)
7 1f6k_A N-acetylneuraminate lya 8.2 1.1E+02 0.0039 28.6 1.1 20 27-47 105-124 (293)
8 3dz1_A Dihydrodipicolinate syn 8.2 1.2E+02 0.0042 28.8 1.3 19 27-47 108-126 (313)
9 3fkr_A L-2-keto-3-deoxyarabona 8.1 1.4E+02 0.0049 28.3 1.8 21 26-47 108-131 (309)
10 2ojp_A DHDPS, dihydrodipicolin 8.0 1.2E+02 0.004 28.5 1.1 19 27-46 102-120 (292)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-53 Score=389.12 Aligned_cols=152 Identities=32% Similarity=0.608 Sum_probs=132.9
Q ss_pred cccCCCCCCceecCChHHHHHHHHHHhhcCCCCCCCCCceeeccCCCCCccccccccccCCCceEEEEEcccccccCCCc
Q 016181 23 WETWKKVDGIKFKPTAEVLIFVYLAGMVSGSTDGPIFPLIQEVDVYQYEPSKLKSKAHDFGDGNMYFFSRVQKKYKKGSI 102 (394)
Q Consensus 23 ~~~~~LPPGFRF~PTDEELV~~YLr~Ki~G~pl~~~~~~I~evDVY~~ePWdLP~~~~~~gd~eWYFFspR~rKy~nG~R 102 (394)
..++.|||||||+|||||||.|||++|+.|.++ +..+|+++|||++|||+||+.+. .++++|||||+|++||++|.|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~--~~~~I~evDvy~~~Pw~Lp~~~~-~g~~ewYFFs~r~~ky~~g~R 86 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRL--PVPIIAEVDLYKFDPWDLPERAL-FGAREWYFFTPRDRKYPNGSR 86 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCC--SSSCCEECCGGGSCGGGSGGGCS-SCSSEEEEEEECCC-----CC
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCC--CcCeeeecccccCCchhhhhhhc-cCCceEEEEeccccccCCCCC
Confidence 446799999999999999999999999999999 78899999999999999999876 467899999999999999999
Q ss_pred ceeeccCceEe-cCCceeeecCCCeEEEEEEEeeeeccCCCCCCCCCCCcCeEEEEEEeCCCCCcc-------ccCcceE
Q 016181 103 RERKAKGGFWK-TGKCNTVRGKDGGTGTERSLTYYSYRHDPKPGEKPIKTHWLMREYMLKRPKNDK-------ESMLMQA 174 (394)
Q Consensus 103 ~nR~tggGyWK-TG~~K~I~s~g~vIG~KKtLvFY~gr~~pkkG~~~~KT~WvMhEYrL~~~~~~~-------~~~~~~V 174 (394)
++|+|++|||| ||++++|.++|.+||+||+|+||.|++ | +| .||+|+||||+|....... ....+||
T Consensus 87 ~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~-p-~g---~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wV 161 (174)
T 3ulx_A 87 PNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKA-P-RG---VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWV 161 (174)
T ss_dssp SCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESST-T-SC---EEEEEEEEEEEECSCC-----------CCSSEE
T ss_pred ceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCC-C-CC---CcCCeEEEEEEeCCCCCcccccccCCCCCCCEE
Confidence 99999999999 999999999899999999999999998 8 89 9999999999999875432 1235689
Q ss_pred EEEEEEeC
Q 016181 175 LCVVYFHG 182 (394)
Q Consensus 175 LCRIykK~ 182 (394)
|||||+|+
T Consensus 162 lCrvf~K~ 169 (174)
T 3ulx_A 162 LCRLYNKK 169 (174)
T ss_dssp EEEEEESC
T ss_pred EEEEEEcC
Confidence 99999875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.2e-53 Score=383.10 Aligned_cols=153 Identities=33% Similarity=0.621 Sum_probs=130.6
Q ss_pred cccCCCCCCceecCChHHHHHHHHHHhhcCCCCCCCCCceeeccCCCCCccccccccccCCCceEEEEEcccccccCCCc
Q 016181 23 WETWKKVDGIKFKPTAEVLIFVYLAGMVSGSTDGPIFPLIQEVDVYQYEPSKLKSKAHDFGDGNMYFFSRVQKKYKKGSI 102 (394)
Q Consensus 23 ~~~~~LPPGFRF~PTDEELV~~YLr~Ki~G~pl~~~~~~I~evDVY~~ePWdLP~~~~~~gd~eWYFFspR~rKy~nG~R 102 (394)
...+.|||||||+|||||||.|||++|+.|.++ +.++|+++|||++|||+||+.+. .++++|||||+|++||++|.|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~--~~~~I~e~Diy~~~Pw~Lp~~~~-~g~~ewyFFs~r~~k~~~g~R 88 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDF--SLQLIAEIDLYKFDPWVLPNKAL-FGEKEWYFFSPRDRKYPNGSR 88 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCC--SSCCSEECCGGGSCGGGHHHHSS-SCSSEEEEEEECCC-------
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCC--CCCeEeecccccCChhHhhchhh-cCCccEEEEeccccccCCCCc
Confidence 446799999999999999999999999999999 78899999999999999999876 467999999999999999999
Q ss_pred ceeeccCceEe-cCCceeeecCCCeEEEEEEEeeeeccCCCCCCCCCCCcCeEEEEEEeCCCCCcc--ccCcceEEEEEE
Q 016181 103 RERKAKGGFWK-TGKCNTVRGKDGGTGTERSLTYYSYRHDPKPGEKPIKTHWLMREYMLKRPKNDK--ESMLMQALCVVY 179 (394)
Q Consensus 103 ~nR~tggGyWK-TG~~K~I~s~g~vIG~KKtLvFY~gr~~pkkG~~~~KT~WvMhEYrL~~~~~~~--~~~~~~VLCRIy 179 (394)
++|+|++|||| ||+++.|..++.+||+||+|+||+|++ | +| .||+|+||||+|....... ....++||||||
T Consensus 89 ~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~-p-~g---~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~ 163 (171)
T 1ut7_A 89 PNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKA-P-KG---TKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163 (171)
T ss_dssp CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESST-T-SC---EEEEEEEEEEEECCCC--------CCEEEEEEE
T ss_pred ccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcC-C-CC---CcCCeEEEEEEcCCCccccCcccCCCEEEEEEE
Confidence 99999999999 999999999889999999999999998 8 88 9999999999999875321 123568999999
Q ss_pred EeCC
Q 016181 180 FHGQ 183 (394)
Q Consensus 180 kK~~ 183 (394)
+|+.
T Consensus 164 ~k~~ 167 (171)
T 1ut7_A 164 KKQS 167 (171)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 9764
No 3
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=14.90 E-value=72 Score=20.48 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=16.2
Q ss_pred chhHHHHHHHhhcccceeeecc
Q 016181 365 NDDIQLLEQYLFENDQMWFQAF 386 (394)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~ 386 (394)
+|-+||++||.-...|-|--||
T Consensus 5 kDvlql~qQy~qsh~qa~rAA~ 26 (26)
T 1kdl_A 5 KDVLRLIEQYVSSHTHAMKXXX 26 (26)
T ss_dssp HHHHHHHHHHTTTTCCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 4678999999988888886654
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=13.45 E-value=94 Score=24.29 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=22.6
Q ss_pred CCCCceecC-ChHHHHHHHHHHhhcCCCC
Q 016181 28 KVDGIKFKP-TAEVLIFVYLAGMVSGSTD 55 (394)
Q Consensus 28 LPPGFRF~P-TDEELV~~YLr~Ki~G~pl 55 (394)
.|.|+.|.. |++||-. ||-+|+....+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 477999998 8899877 79999987766
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=8.48 E-value=1.2e+02 Score=27.04 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=11.3
Q ss_pred eeeccCCCCCcccc
Q 016181 62 IQEVDVYQYEPSKL 75 (394)
Q Consensus 62 I~evDVY~~ePWdL 75 (394)
+.++|||.+.|..-
T Consensus 119 l~dC~IYsY~Pd~~ 132 (164)
T 3nr5_A 119 LAECDIYSYNPDLD 132 (164)
T ss_dssp GGGCEEEEECCCGG
T ss_pred ccCCeEEEEcCCCC
Confidence 56789999999843
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=8.24 E-value=1.1e+02 Score=29.05 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=15.0
Q ss_pred CCCCCceecCChHHHHHHHH
Q 016181 27 KKVDGIKFKPTAEVLIFVYL 46 (394)
Q Consensus 27 ~LPPGFRF~PTDEELV~~YL 46 (394)
.+|| |.|.|++++|+.||-
T Consensus 117 v~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 117 VVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHHH
Confidence 4566 558899999999874
No 7
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=8.22 E-value=1.1e+02 Score=28.61 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=15.1
Q ss_pred CCCCCceecCChHHHHHHHHH
Q 016181 27 KKVDGIKFKPTAEVLIFVYLA 47 (394)
Q Consensus 27 ~LPPGFRF~PTDEELV~~YLr 47 (394)
.+|| |.|.||+++|+.||-.
T Consensus 105 v~~P-~y~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 105 AVTP-FYYKFSFPEIKHYYDT 124 (293)
T ss_dssp EECC-CSSCCCHHHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHHHH
Confidence 3455 4588999999998753
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=8.17 E-value=1.2e+02 Score=28.79 Aligned_cols=19 Identities=11% Similarity=-0.111 Sum_probs=14.2
Q ss_pred CCCCCceecCChHHHHHHHHH
Q 016181 27 KKVDGIKFKPTAEVLIFVYLA 47 (394)
Q Consensus 27 ~LPPGFRF~PTDEELV~~YLr 47 (394)
.+||- |.||+++|+.||-.
T Consensus 108 v~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 108 IAPPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp ECCCT--TCCSHHHHHHHHHH
T ss_pred ECCCC--CCCCHHHHHHHHHH
Confidence 46664 56999999998753
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=8.12 E-value=1.4e+02 Score=28.28 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=15.7
Q ss_pred CCCCCCce---ecCChHHHHHHHHH
Q 016181 26 WKKVDGIK---FKPTAEVLIFVYLA 47 (394)
Q Consensus 26 ~~LPPGFR---F~PTDEELV~~YLr 47 (394)
+.+|| |. |.||+++|+.||-.
T Consensus 108 lv~~P-yy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 108 MAMPP-YHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp EECCS-CBTTTBCCCHHHHHHHHHH
T ss_pred EEcCC-CCccCCCCCHHHHHHHHHH
Confidence 35566 44 79999999998743
No 10
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=8.04 E-value=1.2e+02 Score=28.51 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=14.5
Q ss_pred CCCCCceecCChHHHHHHHH
Q 016181 27 KKVDGIKFKPTAEVLIFVYL 46 (394)
Q Consensus 27 ~LPPGFRF~PTDEELV~~YL 46 (394)
.+|| |.|.||+++|+.||-
T Consensus 102 v~~P-~y~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 102 TVTP-YYNRPSQEGLYQHFK 120 (292)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHHH
Confidence 3455 558899999999873
Done!