Query 016182
Match_columns 394
No_of_seqs 212 out of 845
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 1.3E-51 2.8E-56 379.5 12.9 152 1-153 1-189 (189)
2 PF00170 bZIP_1: bZIP transcri 99.4 7.6E-13 1.6E-17 102.3 9.4 64 251-314 1-64 (64)
3 smart00338 BRLZ basic region l 99.4 2.3E-12 5E-17 99.8 9.2 62 252-313 2-63 (65)
4 KOG4005 Transcription factor X 99.2 2.9E-11 6.3E-16 116.1 10.0 71 253-323 67-137 (292)
5 KOG3584 cAMP response element 99.2 1.9E-11 4.1E-16 119.9 7.6 65 244-308 280-344 (348)
6 KOG4343 bZIP transcription fac 99.2 3.4E-11 7.3E-16 125.6 9.6 71 248-318 274-344 (655)
7 KOG0709 CREB/ATF family transc 99.1 5.9E-11 1.3E-15 122.2 7.1 74 249-322 245-318 (472)
8 PF07716 bZIP_2: Basic region 99.1 8E-10 1.7E-14 83.3 8.8 51 254-305 4-54 (54)
9 KOG0837 Transcriptional activa 98.4 1.6E-06 3.4E-11 84.7 9.4 64 246-309 197-260 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.3 9.3E-09 2E-13 85.2 -6.7 67 250-316 25-91 (92)
11 KOG3119 Basic region leucine z 98.0 2.6E-05 5.6E-10 76.3 8.1 55 256-310 195-249 (269)
12 KOG4196 bZIP transcription fac 97.6 0.00045 9.7E-09 61.7 9.9 67 251-324 49-115 (135)
13 KOG4571 Activating transcripti 97.5 0.00055 1.2E-08 68.1 10.1 50 260-309 232-281 (294)
14 KOG3863 bZIP transcription fac 96.9 0.0019 4.1E-08 69.7 6.7 63 255-317 490-552 (604)
15 PF06156 DUF972: Protein of un 96.7 0.0088 1.9E-07 51.7 7.9 50 276-325 8-57 (107)
16 PRK13169 DNA replication intia 96.4 0.016 3.6E-07 50.4 7.9 48 276-323 8-55 (110)
17 PF10224 DUF2205: Predicted co 96.2 0.027 5.8E-07 46.7 8.0 46 278-323 18-63 (80)
18 PF06005 DUF904: Protein of un 96.0 0.045 9.8E-07 44.3 8.2 49 276-324 4-52 (72)
19 PRK10884 SH3 domain-containing 95.6 0.16 3.5E-06 48.4 11.6 49 274-322 123-171 (206)
20 COG4467 Regulator of replicati 95.6 0.051 1.1E-06 47.5 7.2 47 276-322 8-54 (114)
21 TIGR02894 DNA_bind_RsfA transc 95.2 0.084 1.8E-06 48.9 7.8 41 284-324 98-138 (161)
22 TIGR02449 conserved hypothetic 95.1 0.14 3.1E-06 41.0 7.8 46 278-323 2-47 (65)
23 TIGR02449 conserved hypothetic 95.0 0.11 2.5E-06 41.5 7.1 48 276-323 7-54 (65)
24 PF08614 ATG16: Autophagy prot 94.9 0.46 9.9E-06 44.2 11.9 69 255-323 116-184 (194)
25 COG3074 Uncharacterized protei 94.5 0.12 2.6E-06 42.3 6.0 48 277-324 19-66 (79)
26 PRK10884 SH3 domain-containing 94.4 0.62 1.3E-05 44.5 11.7 57 274-330 116-172 (206)
27 PRK13729 conjugal transfer pil 94.3 0.21 4.6E-06 53.1 9.1 48 275-322 75-122 (475)
28 PF13747 DUF4164: Domain of un 94.2 0.91 2E-05 38.0 11.0 74 250-323 6-79 (89)
29 PF06005 DUF904: Protein of un 94.1 0.37 8.1E-06 39.1 8.2 43 278-320 20-62 (72)
30 PF04102 SlyX: SlyX; InterPro 93.8 0.34 7.3E-06 38.6 7.2 50 275-324 3-52 (69)
31 KOG1414 Transcriptional activa 93.5 0.0033 7.2E-08 64.6 -5.8 62 248-309 147-212 (395)
32 KOG4005 Transcription factor X 93.3 0.91 2E-05 44.9 10.8 48 276-323 97-144 (292)
33 PF02183 HALZ: Homeobox associ 93.3 0.27 5.8E-06 36.6 5.6 38 287-324 2-39 (45)
34 PF09726 Macoilin: Transmembra 93.2 0.82 1.8E-05 50.8 11.7 43 277-319 539-581 (697)
35 COG4026 Uncharacterized protei 93.2 0.53 1.2E-05 46.2 9.0 52 272-323 138-189 (290)
36 PRK15422 septal ring assembly 93.0 0.53 1.1E-05 39.1 7.4 49 276-324 18-66 (79)
37 PF11932 DUF3450: Protein of u 92.9 0.94 2E-05 43.6 10.2 49 271-319 51-99 (251)
38 TIGR00219 mreC rod shape-deter 92.6 0.27 5.8E-06 48.7 6.3 40 284-323 67-110 (283)
39 PRK02119 hypothetical protein; 92.6 0.78 1.7E-05 37.2 7.8 50 275-324 8-57 (73)
40 PF06156 DUF972: Protein of un 92.6 0.53 1.2E-05 40.8 7.2 45 280-324 5-49 (107)
41 PF11559 ADIP: Afadin- and alp 92.4 2.3 4.9E-05 37.8 11.3 68 255-322 45-112 (151)
42 PRK00295 hypothetical protein; 92.4 0.99 2.1E-05 36.0 8.1 49 276-324 5-53 (68)
43 PRK00736 hypothetical protein; 92.4 0.92 2E-05 36.2 7.9 49 276-324 5-53 (68)
44 PRK04325 hypothetical protein; 92.3 0.96 2.1E-05 36.7 8.0 49 276-324 9-57 (74)
45 PRK02793 phi X174 lysis protei 92.3 0.91 2E-05 36.6 7.9 50 275-324 7-56 (72)
46 PRK04406 hypothetical protein; 92.0 1 2.2E-05 36.7 7.8 49 276-324 11-59 (75)
47 PF10473 CENP-F_leu_zip: Leuci 92.0 2.6 5.6E-05 38.3 11.2 66 259-324 35-100 (140)
48 KOG3650 Predicted coiled-coil 91.3 0.85 1.8E-05 39.8 7.0 41 283-323 63-103 (120)
49 PRK00846 hypothetical protein; 91.1 1.4 3.1E-05 36.3 7.9 50 275-324 12-61 (77)
50 PF02183 HALZ: Homeobox associ 91.1 0.85 1.9E-05 33.9 6.0 41 281-321 3-43 (45)
51 PF12808 Mto2_bdg: Micro-tubul 91.0 0.56 1.2E-05 36.1 5.1 49 273-324 1-49 (52)
52 PRK13922 rod shape-determining 91.0 1.5 3.3E-05 42.5 9.3 40 284-323 70-112 (276)
53 PF04880 NUDE_C: NUDE protein, 91.0 0.36 7.8E-06 45.0 4.8 43 278-320 2-47 (166)
54 KOG1962 B-cell receptor-associ 90.7 1.2 2.6E-05 43.2 8.2 50 273-322 162-211 (216)
55 PRK11637 AmiB activator; Provi 90.5 3.4 7.4E-05 42.6 11.9 56 269-324 68-123 (428)
56 PRK13169 DNA replication intia 90.5 1.2 2.5E-05 39.0 7.3 47 279-325 4-50 (110)
57 PF07106 TBPIP: Tat binding pr 90.5 1.4 3E-05 40.0 8.1 52 274-325 84-137 (169)
58 PF10186 Atg14: UV radiation r 90.4 3.8 8.2E-05 39.0 11.4 48 273-320 60-107 (302)
59 PF14197 Cep57_CLD_2: Centroso 90.3 2 4.4E-05 34.5 7.9 49 275-323 11-66 (69)
60 COG3074 Uncharacterized protei 90.0 1.9 4.1E-05 35.4 7.5 51 273-323 22-72 (79)
61 PRK11637 AmiB activator; Provi 89.9 3.6 7.8E-05 42.5 11.5 58 267-324 59-116 (428)
62 PRK00888 ftsB cell division pr 89.6 1.4 3E-05 37.9 6.9 33 272-304 30-62 (105)
63 smart00338 BRLZ basic region l 89.6 1.5 3.1E-05 34.0 6.4 39 282-320 25-63 (65)
64 PF00170 bZIP_1: bZIP transcri 89.1 5.6 0.00012 30.7 9.3 36 284-319 27-62 (64)
65 KOG3335 Predicted coiled-coil 89.1 0.54 1.2E-05 44.3 4.3 42 256-303 92-133 (181)
66 TIGR03752 conj_TIGR03752 integ 88.8 1.5 3.3E-05 46.8 7.9 29 292-320 111-139 (472)
67 PF12718 Tropomyosin_1: Tropom 88.7 2.2 4.9E-05 38.4 7.9 49 275-323 13-61 (143)
68 KOG0977 Nuclear envelope prote 88.7 2.7 5.9E-05 45.7 9.8 68 265-332 130-197 (546)
69 PF12711 Kinesin-relat_1: Kine 88.7 2.3 4.9E-05 35.9 7.3 39 286-324 20-64 (86)
70 PRK15422 septal ring assembly 88.4 2.8 6E-05 35.0 7.5 39 277-315 5-43 (79)
71 PF06785 UPF0242: Uncharacteri 88.4 1.9 4.2E-05 44.5 8.0 53 271-323 122-174 (401)
72 PF09789 DUF2353: Uncharacteri 88.2 3 6.6E-05 42.5 9.3 51 277-327 66-116 (319)
73 PF08172 CASP_C: CASP C termin 88.1 2.2 4.7E-05 42.0 8.0 40 285-324 95-134 (248)
74 KOG4196 bZIP transcription fac 88.1 1.8 3.9E-05 39.2 6.8 31 293-323 77-107 (135)
75 KOG0982 Centrosomal protein Nu 87.8 3.8 8.3E-05 43.6 9.9 48 276-323 297-344 (502)
76 PF09755 DUF2046: Uncharacteri 87.8 1.3 2.8E-05 45.0 6.4 55 279-333 23-79 (310)
77 PF01166 TSC22: TSC-22/dip/bun 87.7 0.44 9.6E-06 37.6 2.4 34 290-323 14-47 (59)
78 PF05103 DivIVA: DivIVA protei 87.7 0.29 6.4E-06 41.8 1.6 49 276-324 25-73 (131)
79 PF10805 DUF2730: Protein of u 87.6 2.9 6.3E-05 35.8 7.6 46 276-321 49-96 (106)
80 PF04728 LPP: Lipoprotein leuc 87.3 5.5 0.00012 31.2 8.2 47 276-322 3-49 (56)
81 PF07888 CALCOCO1: Calcium bin 87.2 7.2 0.00016 42.5 11.9 61 260-320 155-215 (546)
82 PF11932 DUF3450: Protein of u 87.1 10 0.00023 36.4 11.9 49 275-323 48-96 (251)
83 PF05700 BCAS2: Breast carcino 87.1 7.6 0.00016 37.1 10.9 54 270-324 163-216 (221)
84 PRK10803 tol-pal system protei 87.0 4.9 0.00011 39.4 9.7 47 277-323 55-101 (263)
85 COG1579 Zn-ribbon protein, pos 86.7 6 0.00013 38.9 10.1 51 273-323 86-136 (239)
86 PRK00888 ftsB cell division pr 86.6 2.7 5.8E-05 36.1 6.8 57 277-333 28-85 (105)
87 PF08172 CASP_C: CASP C termin 86.5 2.8 6E-05 41.2 7.7 46 275-320 92-137 (248)
88 COG4942 Membrane-bound metallo 86.2 8.3 0.00018 40.9 11.4 70 255-324 38-107 (420)
89 COG4467 Regulator of replicati 86.2 3.2 7E-05 36.6 7.1 45 280-324 5-49 (114)
90 PF15294 Leu_zip: Leucine zipp 86.2 2.3 4.9E-05 42.7 7.0 45 281-325 130-174 (278)
91 COG2433 Uncharacterized conser 86.2 2.6 5.6E-05 46.4 7.9 45 277-321 423-467 (652)
92 PF03962 Mnd1: Mnd1 family; I 85.8 5 0.00011 37.7 8.8 51 272-323 79-129 (188)
93 PF13851 GAS: Growth-arrest sp 85.6 14 0.0003 35.1 11.7 61 250-310 67-127 (201)
94 PF08317 Spc7: Spc7 kinetochor 84.9 8.7 0.00019 38.6 10.5 48 275-322 208-255 (325)
95 PF04977 DivIC: Septum formati 84.9 5.7 0.00012 30.9 7.4 30 273-302 21-50 (80)
96 PF14662 CCDC155: Coiled-coil 84.9 3.5 7.7E-05 39.4 7.3 46 278-323 10-55 (193)
97 COG1579 Zn-ribbon protein, pos 84.9 12 0.00027 36.8 11.3 66 257-322 33-107 (239)
98 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.7 14 0.0003 32.5 10.6 31 292-322 100-130 (132)
99 PHA02562 46 endonuclease subun 84.6 9.1 0.0002 40.1 11.0 13 112-124 28-40 (562)
100 PF14662 CCDC155: Coiled-coil 84.6 5.9 0.00013 38.0 8.6 41 280-320 99-139 (193)
101 PRK02119 hypothetical protein; 84.4 7 0.00015 31.7 7.8 52 277-328 3-56 (73)
102 KOG2391 Vacuolar sorting prote 84.2 25 0.00054 36.6 13.4 49 274-322 230-278 (365)
103 COG4026 Uncharacterized protei 84.1 4.8 0.0001 39.8 8.0 45 279-323 159-203 (290)
104 KOG1414 Transcriptional activa 84.0 0.24 5.1E-06 51.2 -1.0 41 256-296 286-326 (395)
105 PRK04406 hypothetical protein; 84.0 7.7 0.00017 31.7 8.0 51 278-328 6-58 (75)
106 KOG3119 Basic region leucine z 83.9 6.4 0.00014 38.9 8.9 60 250-309 192-255 (269)
107 PF09738 DUF2051: Double stran 83.9 4.5 9.9E-05 40.9 8.0 74 250-323 87-166 (302)
108 PF05377 FlaC_arch: Flagella a 83.6 4.7 0.0001 31.5 6.2 33 278-310 2-34 (55)
109 PF05266 DUF724: Protein of un 83.4 12 0.00026 35.4 10.2 57 256-312 90-146 (190)
110 PF12709 Kinetocho_Slk19: Cent 83.2 6.6 0.00014 33.3 7.4 42 275-316 41-82 (87)
111 PF12325 TMF_TATA_bd: TATA ele 83.1 8.5 0.00018 34.1 8.5 11 256-266 24-34 (120)
112 PF05266 DUF724: Protein of un 83.1 18 0.0004 34.2 11.2 54 271-324 126-179 (190)
113 PF07407 Seadorna_VP6: Seadorn 83.1 2.1 4.5E-05 44.2 5.2 32 284-317 33-64 (420)
114 PF07989 Microtub_assoc: Micro 83.1 5.2 0.00011 32.6 6.6 47 278-324 2-56 (75)
115 PF10226 DUF2216: Uncharacteri 83.0 9.6 0.00021 36.6 9.3 59 251-309 19-81 (195)
116 KOG4797 Transcriptional regula 82.8 1.9 4.1E-05 38.1 4.2 32 290-321 67-98 (123)
117 PF04111 APG6: Autophagy prote 82.6 18 0.0004 36.5 11.7 44 278-321 80-123 (314)
118 PF10186 Atg14: UV radiation r 82.3 20 0.00043 34.2 11.4 36 271-306 65-100 (302)
119 PRK09039 hypothetical protein; 82.2 14 0.00031 37.6 11.0 35 287-321 141-175 (343)
120 COG2900 SlyX Uncharacterized p 82.1 9.9 0.00022 31.3 7.8 50 275-324 7-56 (72)
121 PF04977 DivIC: Septum formati 82.1 5.4 0.00012 31.0 6.3 33 277-309 18-50 (80)
122 KOG4343 bZIP transcription fac 82.0 7.5 0.00016 42.5 9.1 71 243-324 266-336 (655)
123 KOG1962 B-cell receptor-associ 81.8 11 0.00024 36.7 9.4 43 281-323 149-191 (216)
124 PF08232 Striatin: Striatin fa 81.6 10 0.00022 33.9 8.5 46 279-324 28-73 (134)
125 PF13815 Dzip-like_N: Iguana/D 81.6 4.8 0.0001 34.9 6.3 39 281-319 78-116 (118)
126 PF09726 Macoilin: Transmembra 81.5 13 0.00028 41.7 11.0 11 249-259 422-432 (697)
127 KOG0250 DNA repair protein RAD 81.4 11 0.00024 43.9 10.7 57 267-323 370-427 (1074)
128 KOG1853 LIS1-interacting prote 81.1 16 0.00035 36.8 10.4 92 277-371 53-160 (333)
129 PF05278 PEARLI-4: Arabidopsis 80.8 23 0.0005 35.6 11.5 61 263-323 190-254 (269)
130 PF09744 Jnk-SapK_ap_N: JNK_SA 80.6 14 0.00031 34.1 9.3 18 287-304 86-103 (158)
131 PRK02793 phi X174 lysis protei 80.5 12 0.00025 30.3 7.7 52 279-330 4-57 (72)
132 PF01486 K-box: K-box region; 80.4 27 0.00058 29.2 10.2 47 275-321 48-99 (100)
133 PF08826 DMPK_coil: DMPK coile 80.1 13 0.00028 29.5 7.7 43 282-324 17-59 (61)
134 PF07412 Geminin: Geminin; In 80.1 4.3 9.3E-05 39.0 6.0 40 285-324 120-159 (200)
135 TIGR02894 DNA_bind_RsfA transc 79.8 8.4 0.00018 36.0 7.6 14 251-264 62-75 (161)
136 KOG0995 Centromere-associated 79.3 11 0.00023 41.4 9.2 48 275-322 279-326 (581)
137 PF14645 Chibby: Chibby family 79.1 8 0.00017 34.0 6.9 43 278-320 73-115 (116)
138 COG3883 Uncharacterized protei 79.0 8.7 0.00019 38.4 7.9 43 267-309 50-92 (265)
139 smart00340 HALZ homeobox assoc 78.8 4.9 0.00011 30.1 4.6 25 300-324 8-32 (44)
140 KOG0804 Cytoplasmic Zn-finger 78.7 16 0.00034 39.2 10.0 76 258-334 367-450 (493)
141 PF07106 TBPIP: Tat binding pr 78.7 7.2 0.00016 35.3 6.7 46 278-323 81-128 (169)
142 KOG2264 Exostosin EXT1L [Signa 78.6 7.5 0.00016 43.0 7.8 52 275-326 92-143 (907)
143 PF12329 TMF_DNA_bd: TATA elem 78.6 15 0.00033 29.7 7.9 50 274-323 10-59 (74)
144 PF07888 CALCOCO1: Calcium bin 78.2 27 0.00058 38.3 11.9 12 53-64 28-39 (546)
145 PF08647 BRE1: BRE1 E3 ubiquit 78.2 33 0.00072 28.8 10.1 64 259-322 7-70 (96)
146 PRK14127 cell division protein 78.1 5.4 0.00012 34.9 5.5 32 276-307 30-61 (109)
147 PF08614 ATG16: Autophagy prot 78.0 30 0.00064 32.2 10.8 45 279-323 126-170 (194)
148 PF09304 Cortex-I_coil: Cortex 78.0 18 0.00038 31.9 8.5 51 260-310 21-71 (107)
149 PF10211 Ax_dynein_light: Axon 77.9 21 0.00045 33.6 9.7 44 278-321 122-165 (189)
150 PF10205 KLRAQ: Predicted coil 77.8 23 0.00049 30.9 9.1 41 284-324 27-67 (102)
151 PF08826 DMPK_coil: DMPK coile 77.7 24 0.00051 28.0 8.5 37 275-311 24-60 (61)
152 PRK14160 heat shock protein Gr 77.6 8.4 0.00018 37.2 7.1 46 277-322 55-100 (211)
153 PRK00295 hypothetical protein; 77.6 14 0.00031 29.4 7.4 43 281-323 3-45 (68)
154 KOG2129 Uncharacterized conser 77.5 3.1 6.7E-05 44.2 4.5 54 279-332 46-101 (552)
155 TIGR03752 conj_TIGR03752 integ 77.4 5.1 0.00011 43.0 6.1 19 305-323 117-135 (472)
156 PF15058 Speriolin_N: Sperioli 77.2 5.9 0.00013 38.1 5.9 38 278-323 7-44 (200)
157 KOG4571 Activating transcripti 77.0 16 0.00035 37.1 9.1 36 285-320 250-285 (294)
158 PF15035 Rootletin: Ciliary ro 76.8 12 0.00025 35.3 7.7 47 277-323 68-114 (182)
159 PF04859 DUF641: Plant protein 76.8 7.7 0.00017 35.0 6.2 45 276-320 87-131 (131)
160 PTZ00454 26S protease regulato 76.7 6.9 0.00015 40.7 6.8 37 280-316 26-62 (398)
161 PF08961 DUF1875: Domain of un 76.7 0.8 1.7E-05 44.7 0.0 43 274-316 120-162 (243)
162 PF03980 Nnf1: Nnf1 ; InterPr 76.6 4.1 8.8E-05 34.5 4.3 31 274-304 78-108 (109)
163 KOG0946 ER-Golgi vesicle-tethe 76.6 22 0.00047 40.8 10.8 69 255-323 650-718 (970)
164 PF05377 FlaC_arch: Flagella a 76.4 9.4 0.0002 29.9 5.8 32 278-309 9-40 (55)
165 PRK03918 chromosome segregatio 76.3 29 0.00063 38.6 11.9 15 111-125 23-37 (880)
166 PF10828 DUF2570: Protein of u 76.3 37 0.00079 29.2 10.1 74 278-352 34-109 (110)
167 PF01166 TSC22: TSC-22/dip/bun 76.1 3.5 7.5E-05 32.7 3.4 28 277-304 15-42 (59)
168 PF05529 Bap31: B-cell recepto 76.1 30 0.00065 31.9 10.2 37 288-324 152-188 (192)
169 PF07558 Shugoshin_N: Shugoshi 75.7 3.1 6.7E-05 31.0 2.9 35 286-320 10-44 (46)
170 smart00340 HALZ homeobox assoc 75.7 5.8 0.00013 29.7 4.2 28 277-304 6-33 (44)
171 PF13118 DUF3972: Protein of u 75.7 12 0.00025 33.8 7.0 47 278-324 80-126 (126)
172 PF03670 UPF0184: Uncharacteri 75.5 21 0.00046 30.1 8.0 47 277-323 27-73 (83)
173 PF05812 Herpes_BLRF2: Herpesv 75.4 4.8 0.0001 35.8 4.5 29 274-302 1-29 (118)
174 PF04871 Uso1_p115_C: Uso1 / p 75.2 52 0.0011 29.6 11.1 30 294-323 81-110 (136)
175 PF10805 DUF2730: Protein of u 75.2 14 0.00031 31.6 7.3 48 276-323 42-91 (106)
176 PF10211 Ax_dynein_light: Axon 75.1 33 0.00072 32.2 10.3 28 275-302 126-153 (189)
177 PRK00846 hypothetical protein; 75.1 19 0.00041 29.8 7.6 46 278-323 8-53 (77)
178 TIGR02209 ftsL_broad cell divi 75.1 12 0.00026 29.8 6.4 31 273-303 28-58 (85)
179 PF12325 TMF_TATA_bd: TATA ele 74.9 56 0.0012 29.0 11.0 28 277-304 31-58 (120)
180 PF07558 Shugoshin_N: Shugoshi 74.9 3.4 7.4E-05 30.8 2.9 42 257-299 3-44 (46)
181 PF12709 Kinetocho_Slk19: Cent 74.8 10 0.00022 32.1 6.1 42 281-322 32-74 (87)
182 TIGR02209 ftsL_broad cell divi 74.7 11 0.00024 30.0 6.2 34 290-323 24-57 (85)
183 PRK04325 hypothetical protein; 74.6 16 0.00036 29.6 7.1 51 277-327 3-55 (74)
184 PF04156 IncA: IncA protein; 74.6 58 0.0012 29.7 11.5 44 279-322 126-169 (191)
185 PF10669 Phage_Gp23: Protein g 74.4 30 0.00066 30.3 8.9 22 248-269 48-69 (121)
186 PF13851 GAS: Growth-arrest sp 74.4 52 0.0011 31.2 11.5 41 280-320 90-130 (201)
187 KOG2077 JNK/SAPK-associated pr 74.4 7.2 0.00016 43.0 6.3 45 279-323 325-369 (832)
188 COG3883 Uncharacterized protei 74.3 16 0.00035 36.6 8.3 51 273-323 49-99 (265)
189 PF14915 CCDC144C: CCDC144C pr 74.1 23 0.0005 36.2 9.4 61 264-324 181-241 (305)
190 KOG0977 Nuclear envelope prote 73.9 21 0.00046 39.0 9.7 53 260-312 132-184 (546)
191 PF05529 Bap31: B-cell recepto 73.7 21 0.00047 32.9 8.6 30 280-309 158-187 (192)
192 cd07596 BAR_SNX The Bin/Amphip 73.6 36 0.00079 30.6 9.9 53 256-308 111-170 (218)
193 KOG2391 Vacuolar sorting prote 73.6 23 0.0005 36.8 9.4 71 250-322 215-285 (365)
194 PF09304 Cortex-I_coil: Cortex 73.4 65 0.0014 28.4 11.0 53 269-321 23-75 (107)
195 PF04849 HAP1_N: HAP1 N-termin 73.0 6.7 0.00014 40.0 5.4 35 290-324 213-247 (306)
196 PF04102 SlyX: SlyX; InterPro 72.6 24 0.00052 28.0 7.5 43 281-323 2-44 (69)
197 PF04728 LPP: Lipoprotein leuc 72.5 24 0.00051 27.8 7.1 36 284-319 4-39 (56)
198 PF00038 Filament: Intermediat 72.4 51 0.0011 32.2 11.3 39 285-323 211-249 (312)
199 PF13863 DUF4200: Domain of un 72.4 42 0.00092 28.5 9.5 24 299-322 83-106 (126)
200 PHA03162 hypothetical protein; 72.2 2.7 5.8E-05 38.1 2.2 29 272-300 9-37 (135)
201 PF14988 DUF4515: Domain of un 72.0 49 0.0011 31.7 10.8 47 278-324 151-197 (206)
202 PRK04863 mukB cell division pr 72.0 41 0.00089 41.0 12.3 101 255-355 321-448 (1486)
203 PF15070 GOLGA2L5: Putative go 71.9 26 0.00055 38.9 9.9 47 273-319 119-189 (617)
204 PRK12705 hypothetical protein; 71.7 37 0.00081 36.8 10.9 27 281-307 93-119 (508)
205 PF10146 zf-C4H2: Zinc finger- 71.6 52 0.0011 32.2 11.0 50 278-327 62-112 (230)
206 PRK14162 heat shock protein Gr 71.4 16 0.00035 34.8 7.3 36 343-386 125-160 (194)
207 PF10224 DUF2205: Predicted co 71.3 20 0.00044 29.8 7.0 37 275-311 29-65 (80)
208 PF10473 CENP-F_leu_zip: Leuci 71.3 75 0.0016 29.0 11.2 71 250-320 8-82 (140)
209 PF11180 DUF2968: Protein of u 71.3 63 0.0014 31.1 11.1 73 251-324 102-174 (192)
210 PF07716 bZIP_2: Basic region 71.2 39 0.00085 25.3 8.0 25 299-323 27-51 (54)
211 PRK02224 chromosome segregatio 71.0 43 0.00092 37.5 11.6 50 271-320 504-553 (880)
212 COG1382 GimC Prefoldin, chaper 70.9 20 0.00043 32.0 7.2 40 273-312 67-106 (119)
213 KOG1853 LIS1-interacting prote 70.8 62 0.0013 32.8 11.4 54 269-322 126-182 (333)
214 PRK11546 zraP zinc resistance 70.8 12 0.00026 34.3 6.0 53 273-325 58-110 (143)
215 PRK00736 hypothetical protein; 70.4 28 0.00062 27.8 7.4 43 281-323 3-45 (68)
216 PRK15396 murein lipoprotein; P 70.4 29 0.00063 28.8 7.7 46 277-322 26-71 (78)
217 PF06785 UPF0242: Uncharacteri 70.2 29 0.00062 36.2 9.2 47 278-324 94-154 (401)
218 PF15397 DUF4618: Domain of un 70.1 60 0.0013 32.5 11.2 54 281-334 177-232 (258)
219 PF15556 Zwint: ZW10 interacto 69.9 77 0.0017 31.2 11.5 62 260-321 118-179 (252)
220 KOG0971 Microtubule-associated 69.9 51 0.0011 38.5 11.7 45 279-323 328-387 (1243)
221 TIGR02977 phageshock_pspA phag 69.7 42 0.00091 31.9 9.8 50 275-324 98-147 (219)
222 PF11544 Spc42p: Spindle pole 69.6 37 0.0008 28.3 8.0 44 280-323 9-52 (76)
223 PRK10803 tol-pal system protei 69.5 14 0.00031 36.2 6.8 51 270-320 55-105 (263)
224 PRK14161 heat shock protein Gr 69.4 17 0.00036 34.2 6.9 14 375-388 132-145 (178)
225 PRK03992 proteasome-activating 69.4 16 0.00036 37.4 7.4 37 281-317 13-49 (389)
226 PF05911 DUF869: Plant protein 69.3 45 0.00098 38.0 11.3 48 276-323 92-160 (769)
227 KOG1103 Predicted coiled-coil 69.3 21 0.00045 37.6 8.0 59 265-323 227-285 (561)
228 PRK13729 conjugal transfer pil 69.3 17 0.00037 39.2 7.6 47 275-321 82-128 (475)
229 PF04899 MbeD_MobD: MbeD/MobD 69.2 22 0.00049 28.9 6.6 38 277-314 29-66 (70)
230 PRK14143 heat shock protein Gr 69.2 11 0.00023 37.1 5.8 35 344-386 155-189 (238)
231 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.1 28 0.00061 30.6 7.9 73 250-323 41-117 (132)
232 PTZ00454 26S protease regulato 69.0 20 0.00044 37.3 8.0 44 281-324 20-63 (398)
233 KOG0709 CREB/ATF family transc 69.0 14 0.0003 39.7 6.9 42 285-326 274-315 (472)
234 PRK14154 heat shock protein Gr 69.0 18 0.00038 35.0 7.0 39 343-388 139-177 (208)
235 KOG0980 Actin-binding protein 68.9 41 0.00089 38.9 10.7 66 259-324 449-514 (980)
236 COG1792 MreC Cell shape-determ 68.8 15 0.00032 36.6 6.8 45 276-324 66-110 (284)
237 PF05667 DUF812: Protein of un 68.8 22 0.00048 39.2 8.6 46 276-321 335-380 (594)
238 TIGR02231 conserved hypothetic 68.7 58 0.0013 34.6 11.5 45 279-323 127-171 (525)
239 PF14282 FlxA: FlxA-like prote 68.7 22 0.00048 30.4 7.0 44 279-322 29-76 (106)
240 PHA03155 hypothetical protein; 68.5 6.4 0.00014 34.9 3.7 26 276-301 8-33 (115)
241 PF11180 DUF2968: Protein of u 68.2 50 0.0011 31.8 9.8 27 283-309 154-180 (192)
242 PRK03992 proteasome-activating 67.7 17 0.00036 37.4 7.1 47 278-324 3-49 (389)
243 PF11382 DUF3186: Protein of u 67.5 24 0.00052 35.5 8.0 106 277-384 33-138 (308)
244 PF13815 Dzip-like_N: Iguana/D 67.5 21 0.00045 30.9 6.6 40 285-324 75-114 (118)
245 PF02403 Seryl_tRNA_N: Seryl-t 67.5 27 0.00059 29.1 7.2 18 306-323 69-86 (108)
246 PRK14148 heat shock protein Gr 67.4 15 0.00033 35.1 6.2 14 375-388 150-163 (195)
247 PF12718 Tropomyosin_1: Tropom 67.2 30 0.00065 31.2 7.8 32 273-304 32-63 (143)
248 PF05622 HOOK: HOOK protein; 67.0 1.8 3.9E-05 47.7 0.0 60 248-307 296-356 (713)
249 KOG1029 Endocytic adaptor prot 66.9 43 0.00093 38.6 10.3 8 314-321 489-496 (1118)
250 PF04568 IATP: Mitochondrial A 66.8 33 0.00071 29.7 7.6 44 262-305 55-98 (100)
251 COG4942 Membrane-bound metallo 66.8 43 0.00093 35.7 9.9 35 275-309 65-99 (420)
252 KOG4001 Axonemal dynein light 66.5 40 0.00087 33.1 8.9 43 265-307 170-216 (259)
253 TIGR03545 conserved hypothetic 66.5 19 0.00042 39.2 7.6 44 248-291 160-206 (555)
254 KOG2010 Double stranded RNA bi 66.3 24 0.00052 36.7 7.7 48 275-322 153-200 (405)
255 PF10146 zf-C4H2: Zinc finger- 66.2 32 0.00069 33.6 8.3 43 282-324 59-101 (230)
256 PF11365 DUF3166: Protein of u 66.0 22 0.00049 30.6 6.4 39 279-324 4-42 (96)
257 PRK14872 rod shape-determining 66.0 14 0.00031 38.0 6.1 38 284-321 58-98 (337)
258 PF04999 FtsL: Cell division p 65.9 23 0.00051 29.1 6.4 35 289-323 34-68 (97)
259 cd07596 BAR_SNX The Bin/Amphip 65.8 81 0.0018 28.3 10.4 57 267-323 108-171 (218)
260 PF07058 Myosin_HC-like: Myosi 65.7 8.5 0.00018 39.5 4.4 49 285-333 2-52 (351)
261 PF00038 Filament: Intermediat 65.5 90 0.002 30.5 11.4 78 246-323 48-136 (312)
262 PF13870 DUF4201: Domain of un 65.5 1.1E+02 0.0023 28.0 11.2 42 280-321 95-136 (177)
263 PF04012 PspA_IM30: PspA/IM30 65.4 1.1E+02 0.0023 28.7 11.5 47 277-323 99-145 (221)
264 cd07429 Cby_like Chibby, a nuc 65.4 13 0.00029 32.6 5.0 25 284-308 80-104 (108)
265 PRK14158 heat shock protein Gr 65.1 29 0.00063 33.1 7.6 38 343-387 125-162 (194)
266 PF09738 DUF2051: Double stran 65.1 21 0.00045 36.3 7.0 58 275-332 111-170 (302)
267 KOG0933 Structural maintenance 65.0 54 0.0012 38.6 10.8 51 273-323 812-862 (1174)
268 PF02403 Seryl_tRNA_N: Seryl-t 64.9 82 0.0018 26.3 9.9 17 276-292 43-59 (108)
269 KOG4360 Uncharacterized coiled 64.9 24 0.00052 38.6 7.7 50 274-323 217-266 (596)
270 PRK03918 chromosome segregatio 64.8 73 0.0016 35.5 11.8 7 345-351 750-756 (880)
271 PF04880 NUDE_C: NUDE protein, 64.6 9.4 0.0002 35.7 4.2 28 293-321 27-54 (166)
272 PF15290 Syntaphilin: Golgi-lo 64.6 22 0.00048 36.1 7.0 19 338-356 155-175 (305)
273 PF14775 NYD-SP28_assoc: Sperm 64.4 47 0.001 26.0 7.4 37 285-322 22-58 (60)
274 PF08606 Prp19: Prp19/Pso4-lik 64.2 43 0.00092 27.5 7.3 46 278-323 10-69 (70)
275 PRK14155 heat shock protein Gr 63.8 20 0.00044 34.5 6.4 39 343-388 102-140 (208)
276 PF09789 DUF2353: Uncharacteri 63.8 51 0.0011 33.9 9.5 33 292-324 67-99 (319)
277 PF04849 HAP1_N: HAP1 N-termin 63.7 28 0.0006 35.6 7.6 34 289-322 233-266 (306)
278 PRK10698 phage shock protein P 63.7 1E+02 0.0022 29.7 11.1 48 276-323 99-146 (222)
279 COG1730 GIM5 Predicted prefold 63.5 36 0.00078 31.2 7.6 38 284-321 102-139 (145)
280 smart00787 Spc7 Spc7 kinetocho 63.5 68 0.0015 32.6 10.3 35 277-311 205-239 (312)
281 PHA02682 ORF080 virion core pr 63.4 21 0.00046 34.9 6.4 66 275-356 214-279 (280)
282 PF10018 Med4: Vitamin-D-recep 63.4 76 0.0017 29.5 10.0 13 337-349 76-88 (188)
283 PF14916 CCDC92: Coiled-coil d 63.4 15 0.00033 29.2 4.5 44 276-322 3-46 (60)
284 TIGR02231 conserved hypothetic 63.3 86 0.0019 33.4 11.5 40 285-324 126-165 (525)
285 COG1842 PspA Phage shock prote 63.3 1.2E+02 0.0027 29.5 11.6 47 277-323 93-139 (225)
286 PF13935 Ead_Ea22: Ead/Ea22-li 63.2 65 0.0014 28.7 9.1 48 276-323 90-138 (139)
287 COG1196 Smc Chromosome segrega 63.0 66 0.0014 37.9 11.4 44 277-320 440-483 (1163)
288 PF08537 NBP1: Fungal Nap bind 63.0 81 0.0017 32.6 10.7 26 253-278 120-145 (323)
289 PRK02224 chromosome segregatio 62.9 76 0.0016 35.6 11.5 15 260-274 624-638 (880)
290 PF09766 FimP: Fms-interacting 62.7 35 0.00076 35.0 8.3 53 270-322 102-154 (355)
291 PF06698 DUF1192: Protein of u 62.7 25 0.00055 27.8 5.6 25 278-302 23-47 (59)
292 PF09730 BicD: Microtubule-ass 62.6 53 0.0011 37.2 10.2 40 283-322 97-146 (717)
293 KOG1318 Helix loop helix trans 62.5 29 0.00062 36.8 7.7 18 264-281 238-255 (411)
294 PF09744 Jnk-SapK_ap_N: JNK_SA 62.3 87 0.0019 29.0 10.0 44 280-323 93-136 (158)
295 PRK14140 heat shock protein Gr 62.3 31 0.00067 32.9 7.2 38 344-389 124-161 (191)
296 PF05812 Herpes_BLRF2: Herpesv 62.2 12 0.00025 33.4 4.1 25 299-323 5-29 (118)
297 TIGR00606 rad50 rad50. This fa 61.9 67 0.0015 38.3 11.4 14 268-281 849-862 (1311)
298 PF06810 Phage_GP20: Phage min 61.8 29 0.00064 31.7 6.8 35 273-307 31-68 (155)
299 PF11365 DUF3166: Protein of u 61.4 28 0.0006 30.0 6.1 31 276-306 15-45 (96)
300 COG2433 Uncharacterized conser 61.4 41 0.0009 37.4 8.8 47 259-305 418-465 (652)
301 PF03980 Nnf1: Nnf1 ; InterPr 61.3 54 0.0012 27.7 7.9 31 294-324 77-107 (109)
302 PF04012 PspA_IM30: PspA/IM30 61.3 70 0.0015 29.9 9.4 44 280-323 95-138 (221)
303 PF07047 OPA3: Optic atrophy 3 61.2 17 0.00037 32.3 5.0 36 254-295 96-131 (134)
304 PF10481 CENP-F_N: Cenp-F N-te 61.1 62 0.0013 33.0 9.3 65 260-324 37-129 (307)
305 PRK13922 rod shape-determining 61.0 31 0.00067 33.5 7.2 23 278-300 71-93 (276)
306 PF05667 DUF812: Protein of un 60.8 31 0.00067 38.1 7.9 49 275-323 327-375 (594)
307 PF14817 HAUS5: HAUS augmin-li 60.7 41 0.00088 37.5 8.8 13 379-391 211-223 (632)
308 PF11544 Spc42p: Spindle pole 60.7 54 0.0012 27.3 7.4 42 278-319 14-55 (76)
309 KOG3433 Protein involved in me 60.7 89 0.0019 30.2 9.8 57 260-316 100-156 (203)
310 PHA02109 hypothetical protein 60.5 24 0.00053 33.8 6.1 35 274-308 191-225 (233)
311 PF10779 XhlA: Haemolysin XhlA 60.4 44 0.00096 26.5 6.8 30 281-310 18-47 (71)
312 PRK14139 heat shock protein Gr 60.4 38 0.00082 32.2 7.4 36 343-386 116-151 (185)
313 KOG0288 WD40 repeat protein Ti 60.2 49 0.0011 35.4 8.8 45 260-304 27-76 (459)
314 PF04420 CHD5: CHD5-like prote 60.1 31 0.00068 31.5 6.7 22 301-322 70-91 (161)
315 PF07047 OPA3: Optic atrophy 3 59.9 20 0.00044 31.9 5.3 37 268-304 97-133 (134)
316 COG2919 Septum formation initi 59.7 1.2E+02 0.0026 26.4 10.0 30 295-324 55-84 (117)
317 PF12999 PRKCSH-like: Glucosid 59.7 55 0.0012 31.0 8.3 32 271-302 141-172 (176)
318 PF13879 KIAA1430: KIAA1430 ho 59.5 55 0.0012 26.5 7.4 39 283-321 36-97 (98)
319 KOG3091 Nuclear pore complex, 59.4 33 0.00071 37.2 7.5 20 344-363 437-456 (508)
320 PF11500 Cut12: Spindle pole b 59.4 89 0.0019 29.0 9.4 51 254-304 83-133 (152)
321 PF05557 MAD: Mitotic checkpoi 59.4 39 0.00085 37.5 8.5 21 304-324 566-586 (722)
322 PF01920 Prefoldin_2: Prefoldi 59.3 30 0.00065 28.2 5.9 34 288-321 67-100 (106)
323 PF05837 CENP-H: Centromere pr 59.2 31 0.00068 29.5 6.1 23 281-303 22-44 (106)
324 PF15030 DUF4527: Protein of u 59.2 1E+02 0.0022 31.1 10.3 48 261-308 43-90 (277)
325 PF05483 SCP-1: Synaptonemal c 59.1 43 0.00094 37.8 8.6 76 278-353 603-679 (786)
326 KOG4797 Transcriptional regula 58.9 20 0.00043 31.9 4.9 29 276-304 67-95 (123)
327 PF12808 Mto2_bdg: Micro-tubul 58.9 20 0.00043 27.7 4.3 27 278-304 24-50 (52)
328 KOG0239 Kinesin (KAR3 subfamil 58.7 60 0.0013 36.4 9.7 43 278-320 243-285 (670)
329 KOG3650 Predicted coiled-coil 58.7 21 0.00047 31.3 5.0 41 272-312 66-106 (120)
330 PF04201 TPD52: Tumour protein 58.5 50 0.0011 31.0 7.7 6 378-383 149-154 (162)
331 PF12329 TMF_DNA_bd: TATA elem 58.4 45 0.00097 27.0 6.6 38 284-321 34-71 (74)
332 PF04340 DUF484: Protein of un 58.2 31 0.00067 32.6 6.5 21 282-302 46-66 (225)
333 COG4238 Murein lipoprotein [Ce 58.2 61 0.0013 27.1 7.3 47 276-322 25-71 (78)
334 PF06216 RTBV_P46: Rice tungro 58.1 54 0.0012 33.3 8.3 47 262-311 67-113 (389)
335 PHA03155 hypothetical protein; 57.9 14 0.0003 32.9 3.8 24 299-322 10-33 (115)
336 PF07889 DUF1664: Protein of u 57.9 1E+02 0.0023 27.6 9.4 49 275-323 67-115 (126)
337 PF06810 Phage_GP20: Phage min 57.9 48 0.001 30.4 7.4 51 275-325 26-83 (155)
338 COG2919 Septum formation initi 57.8 1.3E+02 0.0028 26.2 11.2 59 254-312 20-86 (117)
339 PF09728 Taxilin: Myosin-like 57.4 1.3E+02 0.0029 30.4 11.2 70 254-323 49-147 (309)
340 PHA03162 hypothetical protein; 57.3 14 0.00031 33.6 3.8 24 299-322 15-38 (135)
341 PF09730 BicD: Microtubule-ass 57.3 57 0.0012 37.0 9.3 47 278-324 71-117 (717)
342 PF01486 K-box: K-box region; 57.1 71 0.0015 26.6 7.8 35 266-300 61-99 (100)
343 KOG0288 WD40 repeat protein Ti 57.0 94 0.002 33.4 10.2 12 377-388 142-153 (459)
344 PF05384 DegS: Sensor protein 56.8 1.1E+02 0.0024 28.4 9.7 79 264-351 22-131 (159)
345 PF07334 IFP_35_N: Interferon- 56.8 22 0.00047 29.6 4.5 18 286-303 3-20 (76)
346 PRK14141 heat shock protein Gr 56.6 36 0.00077 32.9 6.7 39 343-389 123-161 (209)
347 PF04949 Transcrip_act: Transc 56.5 1.4E+02 0.0031 27.9 10.2 61 248-308 37-102 (159)
348 PF06495 Transformer: Fruit fl 56.3 9.8 0.00021 36.1 2.8 37 26-66 127-173 (182)
349 KOG0243 Kinesin-like protein [ 56.2 81 0.0018 37.2 10.4 18 276-293 448-465 (1041)
350 PF10205 KLRAQ: Predicted coil 55.9 81 0.0017 27.6 8.0 31 277-307 41-71 (102)
351 KOG4643 Uncharacterized coiled 55.6 42 0.00092 39.4 8.0 50 274-323 528-587 (1195)
352 PF10506 MCC-bdg_PDZ: PDZ doma 55.4 44 0.00095 27.0 6.0 33 280-312 2-34 (67)
353 PF15035 Rootletin: Ciliary ro 55.3 62 0.0014 30.5 7.9 28 281-308 86-113 (182)
354 KOG1318 Helix loop helix trans 55.1 2.1E+02 0.0045 30.7 12.4 34 274-307 288-321 (411)
355 PF06216 RTBV_P46: Rice tungro 55.1 32 0.00069 34.8 6.2 48 277-324 65-112 (389)
356 TIGR01730 RND_mfp RND family e 55.0 67 0.0014 30.7 8.3 35 290-324 102-136 (322)
357 TIGR03185 DNA_S_dndD DNA sulfu 54.9 1.3E+02 0.0028 33.0 11.4 44 277-320 422-465 (650)
358 KOG0250 DNA repair protein RAD 54.9 1.2E+02 0.0025 36.1 11.3 23 261-283 702-724 (1074)
359 PRK14151 heat shock protein Gr 54.9 50 0.0011 31.0 7.2 38 344-389 108-145 (176)
360 PF09727 CortBP2: Cortactin-bi 54.9 1.1E+02 0.0024 29.4 9.6 38 285-322 136-173 (192)
361 PRK10361 DNA recombination pro 54.6 1.3E+02 0.0028 32.7 11.0 30 277-306 61-90 (475)
362 KOG0161 Myosin class II heavy 54.5 95 0.002 39.0 11.1 64 260-323 1644-1707(1930)
363 PF10482 CtIP_N: Tumour-suppre 54.2 73 0.0016 28.6 7.6 50 274-323 12-61 (120)
364 KOG0996 Structural maintenance 53.9 1.1E+02 0.0024 36.7 11.0 52 272-323 538-589 (1293)
365 PHA03011 hypothetical protein; 53.9 78 0.0017 28.0 7.6 47 276-322 64-117 (120)
366 TIGR01242 26Sp45 26S proteasom 53.8 29 0.00064 34.9 5.9 37 281-324 4-40 (364)
367 PRK04863 mukB cell division pr 53.8 1.3E+02 0.0028 36.9 11.9 22 275-296 313-334 (1486)
368 PRK03947 prefoldin subunit alp 53.7 54 0.0012 28.7 6.9 28 285-312 103-130 (140)
369 PRK14147 heat shock protein Gr 53.7 52 0.0011 30.7 7.1 38 343-388 102-139 (172)
370 PF04201 TPD52: Tumour protein 53.6 42 0.00092 31.5 6.4 6 315-320 73-78 (162)
371 PF08581 Tup_N: Tup N-terminal 53.5 1E+02 0.0022 25.6 7.9 46 275-320 24-73 (79)
372 PRK14163 heat shock protein Gr 53.4 48 0.001 32.3 7.0 36 343-386 119-154 (214)
373 PF15136 UPF0449: Uncharacteri 53.3 71 0.0015 27.7 7.3 39 283-321 57-95 (97)
374 COG1340 Uncharacterized archae 53.2 2E+02 0.0044 29.4 11.6 42 276-317 48-89 (294)
375 PF07200 Mod_r: Modifier of ru 53.1 1.5E+02 0.0033 26.1 9.7 64 259-323 39-104 (150)
376 PF06210 DUF1003: Protein of u 53.1 73 0.0016 27.8 7.4 25 290-314 80-104 (108)
377 PF15030 DUF4527: Protein of u 52.9 1E+02 0.0022 31.1 9.2 60 250-309 10-70 (277)
378 TIGR03689 pup_AAA proteasome A 52.9 33 0.00072 37.2 6.4 37 279-315 4-40 (512)
379 PF10883 DUF2681: Protein of u 52.7 89 0.0019 26.5 7.6 62 277-358 24-85 (87)
380 PHA03161 hypothetical protein; 52.7 68 0.0015 29.8 7.5 58 264-323 44-101 (150)
381 TIGR01554 major_cap_HK97 phage 52.7 79 0.0017 32.1 8.8 26 277-302 35-60 (378)
382 KOG0483 Transcription factor H 52.6 24 0.00051 33.9 4.7 34 290-323 112-145 (198)
383 PRK09413 IS2 repressor TnpA; R 52.6 33 0.00072 29.5 5.3 27 295-321 76-102 (121)
384 PRK10963 hypothetical protein; 52.5 40 0.00087 32.2 6.3 16 290-305 68-83 (223)
385 KOG4643 Uncharacterized coiled 52.4 1.1E+02 0.0023 36.4 10.4 67 257-323 375-441 (1195)
386 TIGR01242 26Sp45 26S proteasom 52.4 23 0.00049 35.7 4.9 34 276-309 6-39 (364)
387 PF10168 Nup88: Nuclear pore c 52.4 1.5E+02 0.0033 33.5 11.6 45 276-320 579-623 (717)
388 KOG0249 LAR-interacting protei 51.8 1.4E+02 0.0031 34.3 11.0 41 284-324 217-257 (916)
389 KOG0946 ER-Golgi vesicle-tethe 51.8 1.1E+02 0.0023 35.5 10.2 55 269-323 657-711 (970)
390 PF03245 Phage_lysis: Bacterio 51.7 1.4E+02 0.003 26.4 9.1 51 273-323 11-61 (125)
391 PF14645 Chibby: Chibby family 51.6 29 0.00063 30.5 4.8 31 291-321 72-102 (116)
392 PRK14153 heat shock protein Gr 51.5 47 0.001 31.8 6.6 37 343-387 119-155 (194)
393 PF13805 Pil1: Eisosome compon 51.5 40 0.00087 33.9 6.3 62 258-324 130-192 (271)
394 KOG0964 Structural maintenance 51.4 1.1E+02 0.0024 36.2 10.3 61 264-324 406-466 (1200)
395 cd00632 Prefoldin_beta Prefold 51.2 69 0.0015 26.9 6.9 37 287-323 67-103 (105)
396 PF05600 DUF773: Protein of un 51.1 68 0.0015 34.7 8.4 45 277-321 447-491 (507)
397 KOG0971 Microtubule-associated 51.1 1.3E+02 0.0028 35.4 10.8 29 294-322 329-357 (1243)
398 PF10481 CENP-F_N: Cenp-F N-te 51.0 1.2E+02 0.0025 31.1 9.4 66 254-319 17-89 (307)
399 KOG0999 Microtubule-associated 51.0 78 0.0017 35.3 8.7 42 280-321 167-211 (772)
400 PF12711 Kinesin-relat_1: Kine 50.9 94 0.002 26.4 7.5 20 287-306 48-67 (86)
401 KOG1103 Predicted coiled-coil 50.8 91 0.002 33.1 8.9 37 285-321 141-177 (561)
402 PF05278 PEARLI-4: Arabidopsis 50.8 2.4E+02 0.0052 28.6 11.5 39 285-323 202-240 (269)
403 TIGR03185 DNA_S_dndD DNA sulfu 50.3 79 0.0017 34.7 8.9 26 277-302 210-235 (650)
404 PRK09343 prefoldin subunit bet 50.0 86 0.0019 27.4 7.5 29 295-323 76-104 (121)
405 PF12999 PRKCSH-like: Glucosid 49.9 1.4E+02 0.0029 28.5 9.2 17 306-322 155-171 (176)
406 COG3879 Uncharacterized protei 49.9 76 0.0016 31.7 7.8 46 278-323 59-108 (247)
407 COG4372 Uncharacterized protei 49.8 2E+02 0.0043 31.0 11.1 43 275-317 136-178 (499)
408 PRK09973 putative outer membra 49.7 98 0.0021 26.3 7.4 46 277-322 25-70 (85)
409 COG3879 Uncharacterized protei 49.5 72 0.0016 31.8 7.6 45 280-324 54-102 (247)
410 PF03961 DUF342: Protein of un 49.3 1.1E+02 0.0024 32.1 9.4 61 264-324 329-402 (451)
411 PF10234 Cluap1: Clusterin-ass 49.2 2.3E+02 0.005 28.6 11.2 76 248-323 140-237 (267)
412 PF14282 FlxA: FlxA-like prote 49.1 80 0.0017 27.0 7.0 47 278-324 21-71 (106)
413 PF05531 NPV_P10: Nucleopolyhe 49.1 70 0.0015 26.5 6.3 49 276-324 11-62 (75)
414 PF08232 Striatin: Striatin fa 49.0 1.2E+02 0.0026 27.1 8.4 46 280-325 15-60 (134)
415 PF05911 DUF869: Plant protein 48.9 80 0.0017 36.1 8.8 37 270-306 128-164 (769)
416 PF03194 LUC7: LUC7 N_terminus 48.9 1.3E+02 0.0028 29.6 9.4 11 344-354 196-206 (254)
417 PF07407 Seadorna_VP6: Seadorn 48.8 55 0.0012 34.2 6.9 25 280-304 36-60 (420)
418 PRK14144 heat shock protein Gr 48.8 74 0.0016 30.6 7.4 37 344-388 131-167 (199)
419 PRK14127 cell division protein 48.7 77 0.0017 27.8 6.9 44 275-321 25-68 (109)
420 KOG2891 Surface glycoprotein [ 48.7 2E+02 0.0043 29.8 10.6 17 269-285 355-371 (445)
421 cd07666 BAR_SNX7 The Bin/Amphi 48.6 68 0.0015 31.6 7.3 53 269-324 156-208 (243)
422 PRK01156 chromosome segregatio 48.6 1.6E+02 0.0034 33.4 11.1 8 345-352 767-774 (895)
423 PF00769 ERM: Ezrin/radixin/mo 48.6 1.7E+02 0.0038 28.6 10.1 37 288-324 80-116 (246)
424 TIGR00606 rad50 rad50. This fa 48.4 1.3E+02 0.0028 36.0 10.8 42 277-318 882-923 (1311)
425 COG4372 Uncharacterized protei 48.3 2.5E+02 0.0053 30.3 11.6 41 284-324 138-178 (499)
426 KOG4807 F-actin binding protei 48.3 1.2E+02 0.0025 32.8 9.2 38 249-286 360-403 (593)
427 PRK06835 DNA replication prote 48.2 1.6E+02 0.0034 30.0 10.1 19 304-322 65-83 (329)
428 KOG2264 Exostosin EXT1L [Signa 48.2 1.7E+02 0.0037 33.0 10.7 46 279-324 103-148 (907)
429 COG3167 PilO Tfp pilus assembl 48.2 74 0.0016 30.9 7.2 11 343-353 129-139 (211)
430 KOG0243 Kinesin-like protein [ 48.1 1.7E+02 0.0037 34.7 11.3 30 278-307 443-472 (1041)
431 PF11853 DUF3373: Protein of u 48.1 17 0.00037 39.3 3.3 22 277-298 32-53 (489)
432 cd00632 Prefoldin_beta Prefold 48.1 95 0.0021 26.1 7.3 38 279-316 66-103 (105)
433 KOG0239 Kinesin (KAR3 subfamil 48.0 1.9E+02 0.0041 32.6 11.4 13 311-323 300-312 (670)
434 PF13942 Lipoprotein_20: YfhG 47.7 1.5E+02 0.0032 28.4 9.0 50 265-316 114-163 (179)
435 COG1340 Uncharacterized archae 47.6 2.8E+02 0.006 28.5 11.5 7 250-256 9-15 (294)
436 KOG1937 Uncharacterized conser 47.5 1.6E+02 0.0034 32.1 10.1 67 253-321 410-519 (521)
437 PF04999 FtsL: Cell division p 47.4 64 0.0014 26.5 6.0 25 278-302 44-68 (97)
438 PRK00247 putative inner membra 47.3 57 0.0012 34.8 7.0 13 263-275 300-312 (429)
439 PF12777 MT: Microtubule-bindi 47.2 51 0.0011 33.4 6.5 44 278-321 237-280 (344)
440 PRK14145 heat shock protein Gr 47.0 92 0.002 29.9 7.7 14 375-388 152-165 (196)
441 KOG4673 Transcription factor T 47.0 1.1E+02 0.0025 34.9 9.4 44 277-320 719-762 (961)
442 TIGR03495 phage_LysB phage lys 46.9 2.3E+02 0.0049 25.8 9.9 66 254-319 25-97 (135)
443 PF09798 LCD1: DNA damage chec 46.9 70 0.0015 35.9 7.9 25 298-322 34-58 (654)
444 cd07627 BAR_Vps5p The Bin/Amph 46.9 99 0.0021 29.2 8.0 27 269-295 108-134 (216)
445 PF10174 Cast: RIM-binding pro 46.9 71 0.0015 36.5 8.0 52 273-324 298-349 (775)
446 PF15397 DUF4618: Domain of un 46.8 1.6E+02 0.0035 29.5 9.6 33 271-303 76-108 (258)
447 PF14915 CCDC144C: CCDC144C pr 46.7 63 0.0014 33.1 6.9 43 281-323 61-103 (305)
448 PF12777 MT: Microtubule-bindi 46.7 79 0.0017 32.0 7.7 33 273-305 239-271 (344)
449 PF06428 Sec2p: GDP/GTP exchan 46.5 1.2E+02 0.0027 26.1 7.7 25 299-323 39-63 (100)
450 KOG0161 Myosin class II heavy 46.3 1.8E+02 0.0038 36.8 11.6 31 275-305 1476-1506(1930)
451 PF02646 RmuC: RmuC family; I 46.3 68 0.0015 32.1 7.1 39 295-333 36-78 (304)
452 PF13094 CENP-Q: CENP-Q, a CEN 46.2 81 0.0017 28.3 6.9 44 277-320 42-85 (160)
453 PF00261 Tropomyosin: Tropomyo 46.2 2.8E+02 0.006 26.6 11.8 44 278-321 171-214 (237)
454 KOG0999 Microtubule-associated 46.2 1.7E+02 0.0037 32.8 10.3 21 344-364 258-278 (772)
455 KOG0978 E3 ubiquitin ligase in 46.1 1.3E+02 0.0029 34.1 9.8 62 265-326 562-623 (698)
456 KOG0612 Rho-associated, coiled 46.0 1.6E+02 0.0035 35.5 10.8 43 276-318 494-536 (1317)
457 PF00261 Tropomyosin: Tropomyo 45.9 2.4E+02 0.0052 27.1 10.5 45 278-322 115-159 (237)
458 PF03670 UPF0184: Uncharacteri 45.9 77 0.0017 26.8 6.2 40 276-315 33-72 (83)
459 PF13600 DUF4140: N-terminal d 45.9 56 0.0012 27.1 5.5 24 279-302 73-96 (104)
460 PF09403 FadA: Adhesion protei 45.9 2.3E+02 0.0049 25.5 11.4 65 256-322 34-107 (126)
461 PF04642 DUF601: Protein of un 45.8 94 0.002 31.5 7.8 57 275-331 216-279 (311)
462 PRK14146 heat shock protein Gr 45.7 81 0.0018 30.6 7.3 39 343-389 140-178 (215)
463 PLN02678 seryl-tRNA synthetase 45.7 1.2E+02 0.0026 32.5 9.1 55 269-323 40-104 (448)
464 PRK06569 F0F1 ATP synthase sub 45.6 2.5E+02 0.0055 26.0 10.8 49 255-303 41-90 (155)
465 PRK14160 heat shock protein Gr 45.6 51 0.0011 32.0 5.9 12 375-386 167-178 (211)
466 PF12128 DUF3584: Protein of u 45.5 1.3E+02 0.0028 35.7 10.2 79 247-331 598-676 (1201)
467 TIGR00414 serS seryl-tRNA synt 45.4 96 0.0021 32.5 8.3 61 252-312 43-105 (418)
468 PF05622 HOOK: HOOK protein; 45.4 7 0.00015 43.2 0.0 104 251-354 352-455 (713)
469 KOG0995 Centromere-associated 45.4 1.9E+02 0.0041 32.2 10.6 74 251-324 272-352 (581)
470 KOG4672 Uncharacterized conser 45.3 35 0.00076 36.5 5.0 73 245-333 70-142 (487)
471 PF01763 Herpes_UL6: Herpesvir 45.3 72 0.0016 35.2 7.5 46 274-319 361-406 (557)
472 KOG0996 Structural maintenance 45.3 1.4E+02 0.0031 35.8 10.2 84 249-332 399-482 (1293)
473 cd00890 Prefoldin Prefoldin is 45.2 79 0.0017 26.6 6.4 39 278-316 89-127 (129)
474 PF02388 FemAB: FemAB family; 45.0 99 0.0021 32.1 8.2 48 275-322 241-298 (406)
475 cd07591 BAR_Rvs161p The Bin/Am 44.9 99 0.0021 29.8 7.7 50 271-323 118-174 (224)
476 PF06818 Fez1: Fez1; InterPro 44.8 1.7E+02 0.0037 28.4 9.2 70 254-323 36-106 (202)
477 PRK11239 hypothetical protein; 44.7 35 0.00076 33.3 4.6 31 276-306 183-213 (215)
478 PRK14157 heat shock protein Gr 44.6 80 0.0017 31.0 7.1 60 279-353 80-139 (227)
479 PRK03947 prefoldin subunit alp 44.5 82 0.0018 27.6 6.6 46 272-317 2-47 (140)
480 PF08961 DUF1875: Domain of un 44.4 7.4 0.00016 38.2 0.0 51 279-329 118-168 (243)
481 KOG0249 LAR-interacting protei 44.4 2E+02 0.0043 33.2 10.7 72 253-324 178-264 (916)
482 PF10779 XhlA: Haemolysin XhlA 44.3 1.6E+02 0.0035 23.3 7.7 47 275-321 5-51 (71)
483 TIGR02338 gimC_beta prefoldin, 44.1 1.1E+02 0.0024 26.0 7.1 43 274-316 65-107 (110)
484 KOG4593 Mitotic checkpoint pro 44.0 1.5E+02 0.0033 33.7 9.8 64 261-324 483-579 (716)
485 PF08657 DASH_Spc34: DASH comp 44.0 1E+02 0.0023 30.6 7.9 50 275-324 179-259 (259)
486 PF12128 DUF3584: Protein of u 44.0 2E+02 0.0044 34.2 11.4 72 249-320 463-534 (1201)
487 PTZ00266 NIMA-related protein 43.8 3.4E+02 0.0074 32.2 13.0 117 212-329 392-508 (1021)
488 PF03961 DUF342: Protein of un 43.8 1.1E+02 0.0024 32.0 8.5 72 252-323 337-408 (451)
489 PF09831 DUF2058: Uncharacteri 43.7 1.4E+02 0.0031 28.3 8.3 87 246-334 9-96 (177)
490 PF10174 Cast: RIM-binding pro 43.6 2.3E+02 0.005 32.5 11.4 73 252-324 333-405 (775)
491 KOG2077 JNK/SAPK-associated pr 43.5 65 0.0014 36.0 6.8 55 276-330 329-383 (832)
492 PF10168 Nup88: Nuclear pore c 43.5 2.4E+02 0.0053 32.0 11.5 70 254-323 550-619 (717)
493 KOG4370 Ral-GTPase effector RL 43.4 73 0.0016 34.4 7.0 48 278-325 408-455 (514)
494 PRK10636 putative ABC transpor 43.3 1E+02 0.0022 33.8 8.4 60 264-323 549-617 (638)
495 PRK10722 hypothetical protein; 43.2 92 0.002 31.1 7.2 49 266-316 161-209 (247)
496 KOG4807 F-actin binding protei 43.1 2.4E+02 0.0053 30.4 10.6 74 249-322 360-453 (593)
497 PF01025 GrpE: GrpE; InterPro 43.0 21 0.00046 31.8 2.7 64 275-353 10-73 (165)
498 KOG3091 Nuclear pore complex, 43.0 1E+02 0.0022 33.6 8.1 71 275-353 354-429 (508)
499 PF15236 CCDC66: Coiled-coil d 43.0 2.9E+02 0.0062 25.9 12.9 111 204-319 2-113 (157)
500 PRK13923 putative spore coat p 42.9 69 0.0015 30.3 6.1 37 275-311 110-146 (170)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1.3e-51 Score=379.47 Aligned_cols=152 Identities=57% Similarity=0.942 Sum_probs=131.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCC-CCC--------
Q 016182 1 MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQ-GSH-------- 71 (394)
Q Consensus 1 MG~~e~~~~~K~~K~ss~~~~~q~~~~~yPDWs~mQAYygp~v~~Pp~f~s~vas~~~phPYmWG~q~-g~~-------- 71 (394)
||++|++|++|++|++++++++|+++|+||||++|||||||| ++|+||+++||++|+|||||||+|| .++
T Consensus 1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~pY 79 (189)
T PF07777_consen 1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWSAMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVPY 79 (189)
T ss_pred CCCccCCcCCCCCCCCCCCcCCCCCCccCCccHhhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCCC
Confidence 999999999999999887655899999999999999999999 8889999999999999999999776 333
Q ss_pred ----CCCCCC--CCCCC----------------CCCCCCccC-CCCCCCCcchhhhhhhccCC-CcccccCCCCCCCCCC
Q 016182 72 ----AHNHGV--PTSPA----------------AVTPLNTEA-PTKSSGNADRGLAKKLKGLD-GLAMSIGNASAESAEG 127 (394)
Q Consensus 72 ----p~g~~~--~~~P~----------------~~tp~s~e~-~~Kss~~kd~~~~Kk~Kg~~-Gl~ms~g~g~~~~~~g 127 (394)
|||..+ +..|. .++|+++|+ ++|++++|||+++||||||| ||+|++|||+.+|+++
T Consensus 80 ~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~~ 159 (189)
T PF07777_consen 80 PAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTSG 159 (189)
T ss_pred ccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCcccc
Confidence 343311 11121 268999999 69999999999999999999 6999999999999998
Q ss_pred C-CCCCCCCC---CCCCCCCCCCCCccccc
Q 016182 128 G-AEQRPSQS---EADGSTDGSDGNTVRAG 153 (394)
Q Consensus 128 ~-s~~~~SqS---~segsSdgsd~Ns~~~s 153 (394)
+ +|++.||| .+||||||||+|+++++
T Consensus 160 ~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~~ 189 (189)
T PF07777_consen 160 SSANDGSSQSSESGSEGSSDGSDGNTNNDS 189 (189)
T ss_pred CCCCCccCccccccccccccCcCccccCCC
Confidence 4 58899997 47999999999999864
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.43 E-value=7.6e-13 Score=102.35 Aligned_cols=64 Identities=52% Similarity=0.702 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 251 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 314 (394)
Q Consensus 251 ErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~ 314 (394)
|++.|+.+|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4677899999999999999999999999999999999999999999999999999999988873
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.39 E-value=2.3e-12 Score=99.83 Aligned_cols=62 Identities=55% Similarity=0.722 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 252 RELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 313 (394)
Q Consensus 252 rE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN 313 (394)
.++|+.+|+++||+||++||.||++|+++|+.+|..|+.+|..|..++..|..++..|..++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999999999999999999999999999999999999887777776655
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.25 E-value=2.9e-11 Score=116.07 Aligned_cols=71 Identities=35% Similarity=0.420 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 253 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 253 E~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|+|-+|||++||.+|+-+|.|||+++++|+.++.+|+.||..|+.+...|++.++.|..+|.+|..+|..+
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55789999999999999999999999999999999999999999999999999999999999999999854
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.22 E-value=1.9e-11 Score=119.93 Aligned_cols=65 Identities=32% Similarity=0.324 Sum_probs=60.0
Q ss_pred CCccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 244 PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 308 (394)
Q Consensus 244 ~e~~~~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~ 308 (394)
...-+.||--+||+-|++||||+||.||+|||+|+.+||.||..|+.+|..|-.||..|++-|..
T Consensus 280 sp~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 280 SPTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred CCCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 44557799999999999999999999999999999999999999999999999999999887654
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.22 E-value=3.4e-11 Score=125.62 Aligned_cols=71 Identities=34% Similarity=0.388 Sum_probs=67.9
Q ss_pred ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 248 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 318 (394)
Q Consensus 248 ~~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~ 318 (394)
-.|.+-.||+.|||+|||||..||+|||+|++.||.++..|.+||..|+.|+..|++++..|+.||..|+-
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 35888999999999999999999999999999999999999999999999999999999999999998874
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.14 E-value=5.9e-11 Score=122.24 Aligned_cols=74 Identities=30% Similarity=0.392 Sum_probs=64.0
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 249 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 249 ~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
.+|+.+||.||||+|.+||+.||+|||+|++.||.+|....+||++|+++|.+|..++..|..+.+.|...+.+
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 48899999999999999999999999999999999999999999999999999866666666655555555543
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.08 E-value=8e-10 Score=83.30 Aligned_cols=51 Identities=53% Similarity=0.730 Sum_probs=46.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 254 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 305 (394)
Q Consensus 254 ~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee 305 (394)
.++.||+ +||+||++||.||++++++|+.+|..|+.+|..|..+|..|+.+
T Consensus 4 ~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 4 EKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566677 99999999999999999999999999999999999999988653
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.38 E-value=1.6e-06 Score=84.71 Aligned_cols=64 Identities=33% Similarity=0.446 Sum_probs=55.2
Q ss_pred ccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 246 TWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 246 ~~~~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
..+.++..+|-+|.+++||++|.+||.||.++|.+||.+|..|..+|..|-.++..|++.+.++
T Consensus 197 id~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~ 260 (279)
T KOG0837|consen 197 IDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAEL 260 (279)
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4456777777788899999999999999999999999999999999999999999886654433
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.30 E-value=9.3e-09 Score=85.22 Aligned_cols=67 Identities=31% Similarity=0.487 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 250 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 316 (394)
Q Consensus 250 dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~L 316 (394)
+..++|..||+.+||.+|+.||.||.+++++|+.++..|+.+...|..++..+..+++.+...+..|
T Consensus 25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566799999999999999999999999999999999998888888888877776666555554444
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.95 E-value=2.6e-05 Score=76.31 Aligned_cols=55 Identities=29% Similarity=0.560 Sum_probs=47.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 256 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 310 (394)
Q Consensus 256 R~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~ 310 (394)
-..|+.+|-+++||||.+++...+++.+||..|+.||..|+.+|.+|+.++..|+
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567999999999999999999999999999999999999999877655553
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.63 E-value=0.00045 Score=61.70 Aligned_cols=67 Identities=28% Similarity=0.427 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 251 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 251 ErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
-..+|..||-++||=.|.-||-|+-.+-++||.+-..|.++ |..|++++..+..|...|+.+...++
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qq-------v~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQ-------VEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999998877777666555555 44555555555566666666666654
No 13
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.53 E-value=0.00055 Score=68.09 Aligned_cols=50 Identities=32% Similarity=0.456 Sum_probs=42.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 260 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 260 k~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
++.|..+|-|=|+||+++.|.|+.+++.|+.+|.+|+.++..|.+++..|
T Consensus 232 r~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 232 RQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667789999999999999999999999999999999888875544444
No 14
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.89 E-value=0.0019 Score=69.67 Aligned_cols=63 Identities=25% Similarity=0.328 Sum_probs=48.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 255 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 317 (394)
Q Consensus 255 KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr 317 (394)
|=.||+=|||.+|+++|+||..-|..||..|+.|+.|-.+|.+|-..+...+..+..+...|-
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~ 552 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELY 552 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899999999999999999999999999888888887777666554444444444443
No 15
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.66 E-value=0.0088 Score=51.69 Aligned_cols=50 Identities=28% Similarity=0.487 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 325 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql 325 (394)
..+.+|++++..|..+...|+..+..|.+++..|+.||..||.+|..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999988753
No 16
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.38 E-value=0.016 Score=50.41 Aligned_cols=48 Identities=29% Similarity=0.466 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
..+..|++++..|..+...|+..+..|-+++..|+.||..||.+|..+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999999999999976
No 17
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=96.24 E-value=0.027 Score=46.66 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
-++|..++..|+.....|..+|..++++|++|..||..|...|.++
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999999999999999999999999987
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.02 E-value=0.045 Score=44.32 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+.++.|+.+|..+-..+..|+.+|..|++++..|..+|..|+.+...++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777776666666666666655543
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.64 E-value=0.16 Score=48.42 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
.++.+++++..+..|+.+|+.|+.++..++.+++.|+.+|..|+..+..
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777777777777777777777777777766654
No 20
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.58 E-value=0.051 Score=47.55 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
..+..|+.++.+|-++...|+..+..|-+++..|+.||..||.+|.+
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45788999999999999999999999999999999999999999987
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.20 E-value=0.084 Score=48.92 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 284 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
....|..||..|..++..|++++..|+.||..|..++..++
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888999999999999999999998888887664
No 22
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.11 E-value=0.14 Score=40.98 Aligned_cols=46 Identities=35% Similarity=0.424 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+..|+.+|+.|-.....|+.++..|+++...+..|+..|.++...+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555666666666665544
No 23
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.04 E-value=0.11 Score=41.50 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+.++.|-..++.|+.||..|+.++..+..+...|...|..=+.+|..+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999998764
No 24
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.89 E-value=0.46 Score=44.21 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=56.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 255 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 255 KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
++.++....+..-+.-.......+.++..-++.|..|...|.-++..+.+++.+|..||..|-+++...
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666667777888888999999999999999999999999999999999999988653
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.46 E-value=0.12 Score=42.25 Aligned_cols=48 Identities=27% Similarity=0.358 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
-+.=|+-+|+.|+.+|+.|..++..+++..+.|+.||.+|+++-..-|
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999999999999999999999999999988765543
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.41 E-value=0.62 Score=44.50 Aligned_cols=57 Identities=18% Similarity=0.057 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQE 330 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E 330 (394)
-.++..+|+++++.+..+...|..++.+|++++..+..|+..|++++..++-....+
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778888888888888888999999999999999999999998888876444333
No 27
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.28 E-value=0.21 Score=53.08 Aligned_cols=48 Identities=29% Similarity=0.374 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
|+..++||++++.|+.|.+.|..+...+++++++|+.||+.|+.++..
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 347889999999999999999999999999999999999999999954
No 28
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=94.24 E-value=0.91 Score=38.04 Aligned_cols=74 Identities=24% Similarity=0.355 Sum_probs=68.1
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 250 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 250 dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
-+.-++|..+++.+=|++=..|.-+.....+|+.++..|......|-.++.....++.+|+.-|.++..+|..+
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999998888888999999999999999999999999999999999999999999864
No 29
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.10 E-value=0.37 Score=39.06 Aligned_cols=43 Identities=35% Similarity=0.459 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
+.-|+.+++.|+.+|..|..+...|++++.+|..|-.....+|
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444
No 30
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=93.76 E-value=0.34 Score=38.56 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+++++||.++..++.-...|-..|....++...|..+.+.|..+|..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999998875
No 31
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=93.50 E-value=0.0033 Score=64.61 Aligned_cols=62 Identities=31% Similarity=0.429 Sum_probs=54.4
Q ss_pred ccchHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 016182 248 IQNERELKRERRKQSNRESARR---SRLRKQAEAEELSRKVDSLI-DENASLKSEINQLSENSEKL 309 (394)
Q Consensus 248 ~~dErE~KR~RRk~sNRESARR---SR~RKq~~leeLe~rV~~L~-~EN~~L~~ei~~L~ee~~~L 309 (394)
+..|.+.||.+|+++|+.+|.+ +|.||+....+|..+|+.|+ .++..|..+|..|..+.+.|
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l 212 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHL 212 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHH
Confidence 4578888999999999999999 99999999999999999999 99988888888876655444
No 32
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=93.34 E-value=0.91 Score=44.89 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.++.+|+.+-+.|+.||..|+.....|-.++++|..+...|+++|.++
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 356799999999999999999999999999999999999999999886
No 33
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.34 E-value=0.27 Score=36.59 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 287 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 287 ~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+|+.+-..|+.....|+.+++.|..||..|++++..+.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666667777776666553
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.25 E-value=0.82 Score=50.82 Aligned_cols=43 Identities=26% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
-.|-+..+..+|+.|...|+.++....+++..|+.|.++||..
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444778888888888888888888888888888888777765
No 35
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.19 E-value=0.53 Score=46.23 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 272 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 272 ~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.--++.++++..+.+.|..+|..|..+++.+++++..|+.||..|.+.+..+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345556777777777777777777788888888888888888888877654
No 36
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.00 E-value=0.53 Score=39.13 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.-+.=|..+|+.|+.+|..|..++..++.....|+.||..|+++...-|
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3455567777778888888888877777777778888888888776543
No 37
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.85 E-value=0.94 Score=43.57 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 271 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 271 R~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
+..-+++++.|+.+++.|+..|.+|...+..++++...|..+...+..-
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555555554444444433
No 38
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=92.64 E-value=0.27 Score=48.70 Aligned_cols=40 Identities=38% Similarity=0.443 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 016182 284 KVDSLIDENASLKSEINQLSENSE----KLRQENAALLEKLKSA 323 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~----~L~~EN~~Lr~~L~~l 323 (394)
.+.+|.+||.+|+.|+..|+++.. .|+.||.+||+.|...
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 456678888888888776644443 4899999999988754
No 39
>PRK02119 hypothetical protein; Provisional
Probab=92.63 E-value=0.78 Score=37.16 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+++.+||.++..++.-...|-..|..-.++...|..+.+.|..+|..++
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45788999999999999999999999999999999999999999998764
No 40
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=92.56 E-value=0.53 Score=40.79 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+|=.++..|+.....|..++..|+.++..|..||..|+.+...|+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999999999999999998885
No 41
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.39 E-value=2.3 Score=37.81 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=48.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 255 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 255 KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
.+..|-..-||..-....++...++.|+..++.|+.++..+..++..+..+...|..++..|...++.
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677777777888888888888888887777777777777777666666666666555554
No 42
>PRK00295 hypothetical protein; Provisional
Probab=92.39 E-value=0.99 Score=36.05 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+++++||.++..++.-...|-..|.+..+++..|..+.+.|..+|..+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999999999999999999999998865
No 43
>PRK00736 hypothetical protein; Provisional
Probab=92.36 E-value=0.92 Score=36.21 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+++++||.++..++.-...|-..|.+-.+++..|..+.+.|..+|...+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999998765
No 44
>PRK04325 hypothetical protein; Provisional
Probab=92.33 E-value=0.96 Score=36.68 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+++++||.++..++.-...|-..|..-.+++..|..+.+.|..+|..++
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999999998865
No 45
>PRK02793 phi X174 lysis protein; Provisional
Probab=92.31 E-value=0.91 Score=36.62 Aligned_cols=50 Identities=26% Similarity=0.231 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+++.+||.++..++.-...|-..|....++...|..+.+.|..+|..+.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999999999999998765
No 46
>PRK04406 hypothetical protein; Provisional
Probab=91.98 E-value=1 Score=36.72 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+++.+||.++..++.-...|-..|....+++..|..+.+.|..+|..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788899999988888888888888888888999988888888887754
No 47
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.98 E-value=2.6 Score=38.32 Aligned_cols=66 Identities=26% Similarity=0.306 Sum_probs=49.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 259 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 259 Rk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
..+.|++.+-+--.-+++.++.|+.++..+..+...|..++..|+.+...|..+....+.++..|.
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777788888888888888888888888888877777777777777777776653
No 48
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.35 E-value=0.85 Score=39.77 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 283 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 283 ~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+|-.|+.-...|..++..+++++.+|++||+.|-+.|+++
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 34555555556677778888888899999999999998876
No 49
>PRK00846 hypothetical protein; Provisional
Probab=91.13 E-value=1.4 Score=36.34 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+++++||.++...+.-...|-..|....+....|..+.+.|..+|+.++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999999876
No 50
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.10 E-value=0.85 Score=33.91 Aligned_cols=41 Identities=44% Similarity=0.552 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
||+..+.|+..-..|+.+...|.+++..|..|...|+.+|.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66667777777777777777777777777888888877764
No 51
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=91.04 E-value=0.56 Score=36.12 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
|++.+++||+.++..=. ..=...-...+.++.+|+.||..|+++|..+|
T Consensus 1 kw~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred CHHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777765432 22222345566777778888888888887655
No 52
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=91.00 E-value=1.5 Score=42.48 Aligned_cols=40 Identities=35% Similarity=0.393 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 016182 284 KVDSLIDENASLKSEINQLSENSE---KLRQENAALLEKLKSA 323 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~---~L~~EN~~Lr~~L~~l 323 (394)
....|.+||.+|++|+..|+.+.. .|+.||..||+.|...
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344555666666666665555444 7799999999988753
No 53
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=90.95 E-value=0.36 Score=44.97 Aligned_cols=43 Identities=33% Similarity=0.543 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQ---LSENSEKLRQENAALLEKL 320 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~---L~ee~~~L~~EN~~Lr~~L 320 (394)
|++||.++++--++|.-|..||.+ |+.++++|+.|.+.||++|
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899998888888888888732 4444444444444444444
No 54
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.73 E-value=1.2 Score=43.22 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+.+.++++.+.+++.++.++..|+++.+.+..+++.|..|++.|+.++..
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 34556666666777777777788888888888888888888888888753
No 55
>PRK11637 AmiB activator; Provisional
Probab=90.53 E-value=3.4 Score=42.65 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 269 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 269 RSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.....-+.+++.|+.++..++.+...+..+|..+.++...|..+...|+.+|...+
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666666666666666666666666666666666666666665543
No 56
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=90.53 E-value=1.2 Score=39.03 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 325 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql 325 (394)
.+|=.++..|+.....|..++..|++.+..|..||..|+.+-..|+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777889999999999999999999999999999999999888753
No 57
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.52 E-value=1.4 Score=39.98 Aligned_cols=52 Identities=40% Similarity=0.420 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEI--NQLSENSEKLRQENAALLEKLKSAQL 325 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei--~~L~ee~~~L~~EN~~Lr~~L~~lql 325 (394)
-++++.+|+.++..|+.+...|...+ ..|..+...|..|+..|..+|..++-
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777777776665 56778888999999999999998764
No 58
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.42 E-value=3.8 Score=39.04 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
..+.++++++.++..|+.+...++.++...++++.++..++...+..|
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555444444444444433
No 59
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.28 E-value=2 Score=34.54 Aligned_cols=49 Identities=31% Similarity=0.371 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEI-------NQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei-------~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+.+++-|..++.....+|..|..+- .....++.+|..||..|+.+|...
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666666655 444455566666666666665543
No 60
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.97 E-value=1.9 Score=35.44 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
==|-++++|..+-..|..|-+.++.....|.++++.|..|...-.++|..+
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888888888888888888888887777777777653
No 61
>PRK11637 AmiB activator; Provisional
Probab=89.93 E-value=3.6 Score=42.50 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 267 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 267 ARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
........+.++.+++.+++.|..+...+..+|..+++++..+..+...|..+|..++
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455566666666666666666666666666666666666666666666653
No 62
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=89.64 E-value=1.4 Score=37.87 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 272 LRKQAEAEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 272 ~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
.+.++++++++++++.|+.+|..|+.+|..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345566677777777777777777777777754
No 63
>smart00338 BRLZ basic region leucin zipper.
Probab=89.62 E-value=1.5 Score=33.95 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 282 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 282 e~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
...+..|+.+...|..++..|..++..|..|+..|+.++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777777777777777777777665
No 64
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=89.09 E-value=5.6 Score=30.67 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 284 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
.+..|+.+...|..++..|..++..|..++..|+.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555555444444444444443
No 65
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=89.09 E-value=0.54 Score=44.34 Aligned_cols=42 Identities=31% Similarity=0.401 Sum_probs=28.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 256 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS 303 (394)
Q Consensus 256 R~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ 303 (394)
|.+|+++++ -...+.+++||+.+|+.|+.+...++..+..|.
T Consensus 92 R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 92 RQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred Hhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665 355667788888888888876665555555554
No 66
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=88.80 E-value=1.5 Score=46.81 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 292 NASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 292 N~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
..+|..+.++|+++..+|......|..+|
T Consensus 111 ~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 111 TQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
No 67
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.73 E-value=2.2 Score=38.40 Aligned_cols=49 Identities=41% Similarity=0.498 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+...++|+.++..|+.++..+-.+|..|..++..|+.+...|..+|..+
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777766666666666666666666666666666654
No 68
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.73 E-value=2.7 Score=45.71 Aligned_cols=68 Identities=25% Similarity=0.361 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Q 016182 265 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIV 332 (394)
Q Consensus 265 ESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E~~ 332 (394)
+.+.+.|..-.+.+.++...+..|+++...++..+..|.++...|..||..|+.+|..+.-....|+.
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl 197 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL 197 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44555555556667777778888888888888888888888888888888888888877544444543
No 69
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=88.69 E-value=2.3 Score=35.92 Aligned_cols=39 Identities=38% Similarity=0.479 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhh
Q 016182 286 DSLIDENASLKSEINQLSEN------SEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 286 ~~L~~EN~~L~~ei~~L~ee------~~~L~~EN~~Lr~~L~~lq 324 (394)
..|..+|..|+.+|..|+++ +.+...||..|++++..++
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777754 4567889999999988774
No 70
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.44 E-value=2.8 Score=34.97 Aligned_cols=39 Identities=36% Similarity=0.404 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 315 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~ 315 (394)
-++.||.+|.+.-..+.-|+-+|..|++++..|..|+..
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655555555555555555555555555444
No 71
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.38 E-value=1.9 Score=44.49 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 271 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 271 R~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
=.|-+.+...||.-+..|++||+.|.-+++.+.++|.+.+.|++.|..+|.+.
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 35667788888888999999999999999999999999999999998888765
No 72
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.18 E-value=3 Score=42.54 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 327 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~ 327 (394)
+-..|...+...+.+|..|..++..|++++.++.-++..||+++...+++.
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence 346788888999999999999999999999999999999999998877555
No 73
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=88.14 E-value=2.2 Score=41.95 Aligned_cols=40 Identities=30% Similarity=0.379 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+.+|+.|+..+..++..|+.++..|..+|-.|=+++.=+|
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555555566666666667778888888888776
No 74
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=88.10 E-value=1.8 Score=39.18 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 293 ASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 293 ~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+|..+...|.++++.|..||..|+.++..+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666777777777777777766654
No 75
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.85 E-value=3.8 Score=43.56 Aligned_cols=48 Identities=29% Similarity=0.371 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
-+.+.|+.++.+|..||.+|+..+..|+..+++|..+-+.+.++|..+
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~l 344 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEAL 344 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 356778889999999999999999999999999988776666666554
No 76
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.81 E-value=1.3 Score=45.01 Aligned_cols=55 Identities=31% Similarity=0.435 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccchhc
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIVL 333 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq--l~~~~E~~~ 333 (394)
++|..+++.|+++|..|+.++..++.+|..|..+|+.||+....++ ..+.+|.|.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is 79 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS 79 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888888888888888888888888888888887764 455555543
No 77
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=87.73 E-value=0.44 Score=37.59 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 290 DENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 290 ~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.|...|+.+|..|.+++..|+.||..||+...--
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe 47 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNASPE 47 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 4455677778888888888888999999876543
No 78
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=87.73 E-value=0.29 Score=41.78 Aligned_cols=49 Identities=39% Similarity=0.508 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+|+.|...+..|..+|..|..++..|..++..+......|+..|..++
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq 73 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQ 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhh
Confidence 5889999999999999999999999999999999988899888886654
No 79
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=87.60 E-value=2.9 Score=35.82 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSL--IDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 276 ~~leeLe~rV~~L--~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
.++..||.+++.| ..+.+.|+.++..++-++..|..+.+.+..++.
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444555555555 444455555555554444444444444443333
No 80
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=87.31 E-value=5.5 Score=31.24 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+.+++|...|..|......|..+|..|+.+......|-..-.++|.+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777777777777776666666665555555544
No 81
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.22 E-value=7.2 Score=42.55 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=28.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 260 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 260 k~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
+++..+........-+.+++.|+..+...+.++..|..++..+......|..|+..|+.++
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555555554444444444444444444444444444444433
No 82
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.12 E-value=10 Score=36.43 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.++..+|..++..|+.|...|...+..+...+..+..+...|..++..+
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777777777777777777777766
No 83
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=87.11 E-value=7.6 Score=37.10 Aligned_cols=54 Identities=24% Similarity=0.221 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 270 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 270 SR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
-+.||..+++ ...++..|+..-..|..++-.+...|..|+.|...|+.+....+
T Consensus 163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555444 77788889999999999999999999999999999988887653
No 84
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.98 E-value=4.9 Score=39.39 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
-+-+|..+++.|+.|+..|+-+|+++..+++.+....+.|-.+|...
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888888888888888888888888887777653
No 85
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.72 E-value=6 Score=38.92 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+...++..|..++..++.+...|..++..|..+...|..+...|+.++..+
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666666665543
No 86
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.55 E-value=2.7 Score=36.12 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhcccccchhc
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK-SAQLGNKQEIVL 333 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~-~lql~~~~E~~~ 333 (394)
.+.+|+++++.++.+|..|+.++..|+++...|...-.-|.+... ++-+.-..|++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy 85 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFY 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEE
Confidence 567888888888888888888888888888888753333333332 133444455543
No 87
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=86.49 E-value=2.8 Score=41.21 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
+++..|||.++..+..++..|+.||..|+..+.+|-...+-|..-=
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3445899999999999999999999999999999998887775544
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.20 E-value=8.3 Score=40.85 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=53.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 255 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 255 KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
||.+-.+++=+.-.++....+.+...|+.++..|+.++..|..+|......+.++...+..+...|..++
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555555666666777888899999999999999888888888888888888888888877764
No 89
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=86.18 E-value=3.2 Score=36.56 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+|=.+|..|+.....|..++..|++.+..|..||..|+-+...++
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 455678999999999999999999999999999999999999985
No 90
>PF15294 Leu_zip: Leucine zipper
Probab=86.16 E-value=2.3 Score=42.73 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 325 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql 325 (394)
|..++..|+.||..|+.++..+..+|.....|...|..+|.++|.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999875
No 91
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.16 E-value=2.6 Score=46.38 Aligned_cols=45 Identities=29% Similarity=0.462 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
++..|+.+|+.|+.||+.|..+|.+++.+...|+.+...++.++.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666655555555443
No 92
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.83 E-value=5 Score=37.70 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 272 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 272 ~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+.++.+++|+.+++.+......- .+-..+-+++..|..++..|+.+|..+
T Consensus 79 ~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 79 EELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443222111 222334455566666666666666644
No 93
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.59 E-value=14 Score=35.05 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 250 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 310 (394)
Q Consensus 250 dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~ 310 (394)
.+.+....++.+.+-+.-+.+-..-+.++..++.++..|+-++..|..++..|.++.+.|.
T Consensus 67 a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 67 AEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777877777777777777778888888888888888877777777766664
No 94
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.91 E-value=8.7 Score=38.60 Aligned_cols=48 Identities=27% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+.+++.|..++..+..++..++.++..|+.++..|..+...|.+++..
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444444444444444444444444433
No 95
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=84.90 E-value=5.7 Score=30.87 Aligned_cols=30 Identities=37% Similarity=0.576 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQL 302 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L 302 (394)
+.++++.+|+.+++.|+.+|..|..++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666666665
No 96
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.86 E-value=3.5 Score=39.43 Aligned_cols=46 Identities=33% Similarity=0.433 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+++|+..-..|..||..|...|..+.+.+.+|..|+..|+.++..+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444455555555555555544
No 97
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=84.86 E-value=12 Score=36.76 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=45.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 016182 257 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE---------NSEKLRQENAALLEKLKS 322 (394)
Q Consensus 257 ~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~e---------e~~~L~~EN~~Lr~~L~~ 322 (394)
.++.+.-.+.+++.=.-++..+++|+.+|..++.+.+.++.++..++. ++..|..|-..++.++..
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777778889999999999999988888888776653 334444444444444443
No 98
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.70 E-value=14 Score=32.48 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 292 NASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 292 N~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
-..|..+|..+..+|..|..+|..|-.+|..
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777788888888888877764
No 99
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.58 E-value=9.1 Score=40.13 Aligned_cols=13 Identities=15% Similarity=0.182 Sum_probs=6.4
Q ss_pred CcccccCCCCCCC
Q 016182 112 GLAMSIGNASAES 124 (394)
Q Consensus 112 Gl~ms~g~g~~~~ 124 (394)
|++.++|.+-+||
T Consensus 28 g~~~i~G~NG~GK 40 (562)
T PHA02562 28 KKTLITGKNGAGK 40 (562)
T ss_pred CEEEEECCCCCCH
Confidence 4455555444444
No 100
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.58 E-value=5.9 Score=37.95 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
.|..++..|+.+|..|..+...|+.+...|..++..|+-+|
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 44555555555555555555555555555555555555555
No 101
>PRK02119 hypothetical protein; Provisional
Probab=84.37 E-value=7 Score=31.66 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccc
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGNK 328 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l--ql~~~ 328 (394)
+++.|+.|+..|+.....+...|..|.+.+-+...+...|+.+|..+ ++...
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999887 55443
No 102
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.24 E-value=25 Score=36.59 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
-++++++|.++-+.|..-.++|+.++++|.++...|......|+.+..+
T Consensus 230 ~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 230 LQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3445566666666666666677777777777777777777777777766
No 103
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.08 E-value=4.8 Score=39.78 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
++|+.+++.++.+...|..++.+|.+.+..|.-|-..|+.++.++
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 344444444444444444444444444444444555555555444
No 104
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=84.01 E-value=0.24 Score=51.18 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=37.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 256 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK 296 (394)
Q Consensus 256 R~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~ 296 (394)
+.|=.++||.+|-|+|.|||.....|+.+...+..+|..|.
T Consensus 286 ~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 286 RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 34458999999999999999999999999999999999888
No 105
>PRK04406 hypothetical protein; Provisional
Probab=84.01 E-value=7.7 Score=31.68 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccc
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGNK 328 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l--ql~~~ 328 (394)
++.|+.|+..|+.....+..-|..|.+.+-....+...|+.+|..+ ++...
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999999999999999999999999999987 45443
No 106
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=83.91 E-value=6.4 Score=38.91 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=39.7
Q ss_pred chHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 250 NERELKRERR----KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 250 dErE~KR~RR----k~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
++++..|+|| ..+-|..+|.--..-+.++.+|+.+-+.|+.++.+|+.++..|+.-+..+
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444 44555666655566667778888888888888888888888877655443
No 107
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.85 E-value=4.5 Score=40.91 Aligned_cols=74 Identities=26% Similarity=0.245 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHhHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 250 NERELKRERRKQSNRES-----ARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 250 dErE~KR~RRk~sNRES-----ARRSR~RK-q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
-|-|+|-.+=|++|-.= +-.=..-- +..|++|+..+.+|..++.....++.++++.+..|..|...|+++|...
T Consensus 87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777321 11111111 5667788888888888887777888888899999999999999988753
No 108
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=83.63 E-value=4.7 Score=31.49 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLR 310 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~ 310 (394)
+++||.++..|......++.+++.+++.++.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555555555555555444443
No 109
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.41 E-value=12 Score=35.42 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=33.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 256 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 312 (394)
Q Consensus 256 R~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~E 312 (394)
-.+.++....+-+-.+.+.+++.+.|+.++..-..++..|..++..|.+++..|..+
T Consensus 90 ~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777777777777665455555555555444444444444
No 110
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=83.22 E-value=6.6 Score=33.29 Aligned_cols=42 Identities=33% Similarity=0.442 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 316 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~L 316 (394)
+-|-...+.+|..|+.+|..|..++..|+.++..-+.|-..|
T Consensus 41 ksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 41 KSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555554444444444433
No 111
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.09 E-value=8.5 Score=34.10 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=4.2
Q ss_pred HHHHHHHhHHH
Q 016182 256 RERRKQSNRES 266 (394)
Q Consensus 256 R~RRk~sNRES 266 (394)
..||+..-..+
T Consensus 24 ~lr~~E~E~~~ 34 (120)
T PF12325_consen 24 QLRRLEGELAS 34 (120)
T ss_pred HHHHHHHHHHH
Confidence 33444333333
No 112
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.08 E-value=18 Score=34.23 Aligned_cols=54 Identities=26% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 271 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 271 R~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
..+.-.++.+|+.++-.|+.+.+.|..+......++.+|..+...|.+.+.+..
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666666666666666666676666543
No 113
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=83.07 E-value=2.1 Score=44.20 Aligned_cols=32 Identities=44% Similarity=0.375 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 284 KVDSLIDENASLKSEINQLSENSEKLRQENAALL 317 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr 317 (394)
+...|+.||..|++|++.|+.++++| |+..|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 34566777777777777777777777 444454
No 114
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=83.06 E-value=5.2 Score=32.64 Aligned_cols=47 Identities=32% Similarity=0.360 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSE--------KLRQENAALLEKLKSAQ 324 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~--------~L~~EN~~Lr~~L~~lq 324 (394)
+.+++..++.|+.||=.|+-+|--|.+.+. .+..||-.|+..+..++
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~ 56 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLK 56 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888888877776655 33556666666665553
No 115
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.02 E-value=9.6 Score=36.56 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 251 ERELKRERRKQSNRESARRSRLRKQA----EAEELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 251 ErE~KR~RRk~sNRESARRSR~RKq~----~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
|.-.+|.||-+..+.++=.-+-+=.+ ++...-.++..|+..|+.|..++.+|+.-|.-|
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFL 81 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFL 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34467888888887777544433322 333444556778888888888888888776544
No 116
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=82.76 E-value=1.9 Score=38.12 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 290 DENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 290 ~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
+|...|+.+|..|.+++..|+.||.-||.-+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34445555666666666667777777775443
No 117
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.56 E-value=18 Score=36.46 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
+.+|+.+.+.|..+-..++.+.+.+..+...+..|...|..++.
T Consensus 80 l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 80 LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333334444444444444444444444444443
No 118
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.35 E-value=20 Score=34.19 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 271 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 306 (394)
Q Consensus 271 R~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~ 306 (394)
+.+++.+++.|..+++.++.++..++.++..+++.+
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
No 119
>PRK09039 hypothetical protein; Validated
Probab=82.25 E-value=14 Score=37.62 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 287 SLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 287 ~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
.|+++...|+.++..|...+..++.+...++.+|.
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~ 175 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 120
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.13 E-value=9.9 Score=31.26 Aligned_cols=50 Identities=24% Similarity=0.201 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+++.+||.++..-+.-...|...|...+...+++....+.|-.++.+++
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35788999999988888888988888888888899989999999998876
No 121
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=82.11 E-value=5.4 Score=30.98 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
.+..+..++..|+.++..|+.++..|+++...|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666555555555555
No 122
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=82.00 E-value=7.5 Score=42.51 Aligned_cols=71 Identities=25% Similarity=0.292 Sum_probs=49.5
Q ss_pred CCCccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 243 PPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 243 ~~e~~~~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+.+.+-.-+.|.|-.+|.| |+=|-.+-.++.++.. ++--..|..+|+.|..+|+.|+.||..||.+|..
T Consensus 266 l~~stp~~~~d~kv~krqQ---------RmIKNResA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~ 334 (655)
T KOG4343|consen 266 LQSSTPNVGSDIKVLKRQQ---------RMIKNRESACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDE 334 (655)
T ss_pred ccCCCCCCccCHHHHHHHH---------HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455566788888888765 2334444444444332 2334568888999999999999999999999988
Q ss_pred hh
Q 016182 323 AQ 324 (394)
Q Consensus 323 lq 324 (394)
+.
T Consensus 335 l~ 336 (655)
T KOG4343|consen 335 LV 336 (655)
T ss_pred Hh
Confidence 64
No 123
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.79 E-value=11 Score=36.67 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|+.+...+.++-..|+.+++....+++.+..++.+|+.+...+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555555555555555555555555566666666655554
No 124
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=81.63 E-value=10 Score=33.92 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.||..++..|+.|+..+..-...|...+.-|+..++..|.++..+.
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4566666666666666666666666666667777777777776643
No 125
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=81.61 E-value=4.8 Score=34.87 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
|...+..|+.++..+..++..|++.+.++..+...|+.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555555555555544
No 126
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.46 E-value=13 Score=41.67 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=6.2
Q ss_pred cchHHHHHHHH
Q 016182 249 QNERELKRERR 259 (394)
Q Consensus 249 ~dErE~KR~RR 259 (394)
.-|.|+||.|.
T Consensus 422 rLE~dvkkLra 432 (697)
T PF09726_consen 422 RLEADVKKLRA 432 (697)
T ss_pred HHHHHHHHHHH
Confidence 45566666553
No 127
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=81.36 E-value=11 Score=43.92 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 267 ARRSRLRKQAEAEELSRKV-DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 267 ARRSR~RKq~~leeLe~rV-~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.++++.+....+.+++.+. ..|..+..++..++..|.++.+.|+.++..|++++.++
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555 44555555666667777777777777777777777765
No 128
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.09 E-value=16 Score=36.82 Aligned_cols=92 Identities=23% Similarity=0.274 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhh-----cccccchhcccccCCC
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENS-----------EKLRQENAALLEKLKSAQ-----LGNKQEIVLNEDKRVT 340 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~-----------~~L~~EN~~Lr~~L~~lq-----l~~~~E~~~~~~~~~~ 340 (394)
+++.|+.+...|+.+|+.|+.++..++++. ..|+.+|.++++.-..++ |.+..+. +.-+++..
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDd-LErakRat 131 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDD-LERAKRAT 131 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHhhhhh
Confidence 455566666666666677776666665443 345555555444333221 2222221 11346777
Q ss_pred CchhhhhhhhccCCCCCCCcccccccccccc
Q 016182 341 PVSTENLLSRVNNSGTVDRNMEEGGHLFEKN 371 (394)
Q Consensus 341 p~~~e~lls~~~~~~~~~~~~~~~~~~~~~~ 371 (394)
-++.++|-+++|.. ..|+---|.++||+-
T Consensus 132 i~sleDfeqrLnqA--IErnAfLESELdEke 160 (333)
T KOG1853|consen 132 IYSLEDFEQRLNQA--IERNAFLESELDEKE 160 (333)
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHhhHHH
Confidence 78899999999853 334434444555554
No 129
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=80.78 E-value=23 Score=35.59 Aligned_cols=61 Identities=26% Similarity=0.369 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 263 NRESARRSRLRK----QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 263 NRESARRSR~RK----q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.|+..+.-..|| +.+++.++.++...+.+...++.++...+.++..|+.+-..|...+..+
T Consensus 190 ~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 190 TREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 5677777777777777777777777777777777777777777666554
No 130
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=80.61 E-value=14 Score=34.11 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016182 287 SLIDENASLKSEINQLSE 304 (394)
Q Consensus 287 ~L~~EN~~L~~ei~~L~e 304 (394)
.++.+...|..+|..|..
T Consensus 86 ~~~~e~k~L~~~v~~Le~ 103 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEE 103 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 131
>PRK02793 phi X174 lysis protein; Provisional
Probab=80.52 E-value=12 Score=30.29 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccccc
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGNKQE 330 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l--ql~~~~E 330 (394)
.+|+.|+..|+.....+..-|..|.+.+-....+...|+.+|..+ ++...++
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 468899999999999999999999998888888889999998887 5555443
No 132
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.39 E-value=27 Score=29.16 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLI-----DENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 275 q~~leeLe~rV~~L~-----~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
-.++..||.+++.-- .....|..++..|+.+...|..+|..|+.++.
T Consensus 48 ~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 48 LKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666776665332 24556788888888888889999999998875
No 133
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.10 E-value=13 Score=29.48 Aligned_cols=43 Identities=14% Similarity=0.300 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 282 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 282 e~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
..++...+..|..+.+++.....++..|..+...|+.++.+++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344456677777777777777777777777777777777655
No 134
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=80.10 E-value=4.3 Score=39.05 Aligned_cols=40 Identities=35% Similarity=0.489 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+..--.||..|+.+|..+.+++..|..||..|++-...++
T Consensus 120 L~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~ 159 (200)
T PF07412_consen 120 LEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQ 159 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344457777888888888888888888887777655543
No 135
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.85 E-value=8.4 Score=36.00 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHhH
Q 016182 251 ERELKRERRKQSNR 264 (394)
Q Consensus 251 ErE~KR~RRk~sNR 264 (394)
+-++.+..|++.+|
T Consensus 62 ~i~~AKkqRk~~~~ 75 (161)
T TIGR02894 62 AIELAKKQRKELKR 75 (161)
T ss_pred HHHHHHHHHhcccc
Confidence 33344444555544
No 136
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.31 E-value=11 Score=41.44 Aligned_cols=48 Identities=31% Similarity=0.380 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+.|+..|+.+-..+......|..++....++++.|..+|..|+.+|..
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777777777777777777777777777777777753
No 137
>PF14645 Chibby: Chibby family
Probab=79.14 E-value=8 Score=33.98 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
...|.++..+|+.||+-|+-+++.|-.-+.....|...+..+|
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556778888888888888888777666666655555543
No 138
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.01 E-value=8.7 Score=38.42 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 267 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 267 ARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
++.--.+....++++..++..++.++.++..++..|+.+...|
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555555555555555555555554444433
No 139
>smart00340 HALZ homeobox associated leucin zipper.
Probab=78.79 E-value=4.9 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 300 NQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 300 ~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+-|++-|+.|..||+.|+.+|++++
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666654
No 140
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.70 E-value=16 Score=39.25 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccccc
Q 016182 258 RRKQSNRESARRSRLRKQ----AEAEELSRKVDSLIDENASLKSEINQLSENSEKL----RQENAALLEKLKSAQLGNKQ 329 (394)
Q Consensus 258 RRk~sNRESARRSR~RKq----~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L----~~EN~~Lr~~L~~lql~~~~ 329 (394)
+-.++|-++++.+-.||. ..+++++.++..++.+|..|.+....++.++.++ ..++.++.+++.+|| .+.+
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq-EQlr 445 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ-EQLR 445 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 345566677777666664 4456777778888888887777666555444433 233333334444443 3334
Q ss_pred chhcc
Q 016182 330 EIVLN 334 (394)
Q Consensus 330 E~~~~ 334 (394)
+++++
T Consensus 446 Dlmf~ 450 (493)
T KOG0804|consen 446 DLMFF 450 (493)
T ss_pred hHhee
Confidence 44444
No 141
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.66 E-value=7.2 Score=35.34 Aligned_cols=46 Identities=33% Similarity=0.450 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENS--EKLRQENAALLEKLKSA 323 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~--~~L~~EN~~Lr~~L~~l 323 (394)
+.+|+.++..|+.++..|..++..|.... ..|..+...|++++..+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l 128 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEEL 128 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777766543 56666666666666655
No 142
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=78.64 E-value=7.5 Score=42.98 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 326 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~ 326 (394)
..++-|||.+-+.|..|..++..++++|++.......|..+|+-.+..+|..
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 4578888888888888888888888888888888888888888888776533
No 143
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.63 E-value=15 Score=29.73 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|-+.+..|..+-+.|......+...|..|+.++..++.+...|+.++..+
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777777777666554
No 144
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.23 E-value=27 Score=38.30 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=5.9
Q ss_pred CCCCCCCCCccc
Q 016182 53 IASGHAPQPYMW 64 (394)
Q Consensus 53 vas~~~phPYmW 64 (394)
+.+.+.||++=|
T Consensus 28 lt~~~~ps~~DW 39 (546)
T PF07888_consen 28 LTPGFHPSSKDW 39 (546)
T ss_pred cCCCCCCCCCCe
Confidence 444444555555
No 145
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=78.22 E-value=33 Score=28.81 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=55.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 259 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 259 Rk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
++...++..+..=..|+..+..|+.++..|..|...-..++-.+.+..+.|..|+..|+..+..
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5566677777788889999999999999999999999999999999999999999999888865
No 146
>PRK14127 cell division protein GpsB; Provisional
Probab=78.15 E-value=5.4 Score=34.93 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSE 307 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~ 307 (394)
+.|+++...++.|..||..|+.++..|++++.
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~ 61 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVD 61 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444333
No 147
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.05 E-value=30 Score=32.23 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
..|+.++..|..+...+..-+..|+.++..|..++..|..++..+
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444445555555555444
No 148
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.00 E-value=18 Score=31.88 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=25.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 260 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 310 (394)
Q Consensus 260 k~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~ 310 (394)
++.-.|..+-|+-.=..+-++|+..+..|++++..+...+..|+.++..+.
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444455555555555555555555555544444443
No 149
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.88 E-value=21 Score=33.60 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
..+|+.++..|+.++..|..++..|+.+++.++..+..+++...
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888888888887777766555443
No 150
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.78 E-value=23 Score=30.94 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 284 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+...|+.+...-...|..+.++++.|...|.+|-.++..+|
T Consensus 27 k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 27 KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666667777777777776665
No 151
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=77.72 E-value=24 Score=28.02 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 311 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~ 311 (394)
+.-.-.++.++...+..|..|..+|..|+.+++.|++
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344566777777777777777777777777766654
No 152
>PRK14160 heat shock protein GrpE; Provisional
Probab=77.57 E-value=8.4 Score=37.24 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
.+..|+.++..|+.++..|..++..|+.++..+.++..-+|.+...
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666666555543
No 153
>PRK00295 hypothetical protein; Provisional
Probab=77.56 E-value=14 Score=29.43 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|+.++..|+.....+...|..|.+.+-+...+...|+.+|..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888888777777788888888776
No 154
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=77.46 E-value=3.1 Score=44.20 Aligned_cols=54 Identities=30% Similarity=0.409 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccchh
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL--GNKQEIV 332 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql--~~~~E~~ 332 (394)
++|..+|..|.++|..|+.+++.++-.|..+..||+-|+.--..+|. .+.+|.|
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfi 101 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFI 101 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHH
Confidence 67888899999999999999999999999999999999988777764 4445554
No 155
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.39 E-value=5.1 Score=42.95 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 016182 305 NSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 305 e~~~L~~EN~~Lr~~L~~l 323 (394)
+.++|..|...|+..|..+
T Consensus 117 ~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555
No 156
>PF15058 Speriolin_N: Speriolin N terminus
Probab=77.17 E-value=5.9 Score=38.06 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+|.|.++++.|-.||.+|++.|..+ .||.+||.-|.+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence 4677788888888888888877654 4688888777765
No 157
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=77.01 E-value=16 Score=37.09 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
-+.|..|...|..++.+|+++...|+.|.+-||+-|
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 158
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=76.80 E-value=12 Score=35.33 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+++|=+++++.|...|.-|+.++......+..|..++..|...+..+
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666655555544
No 159
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=76.77 E-value=7.7 Score=34.98 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
..+...|..++.|+.+...=..+|..|++++..+...|..|..+|
T Consensus 87 sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 87 SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344555666666777776667777777777777777777776543
No 160
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=76.69 E-value=6.9 Score=40.65 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 316 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~L 316 (394)
+|+.++..|+.++..|..++..++++..+|+.|+..|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 26 ELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554444444444433
No 161
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=76.69 E-value=0.8 Score=44.72 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 316 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~L 316 (394)
-|..+||+..++..|+.....|..++++|++++..|.+||..|
T Consensus 120 dKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 120 DKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777778888877777777777777777777777777777
No 162
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=76.65 E-value=4.1 Score=34.46 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
|+.+++.|..+++.|+.+|..|..+|..+++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566677777777777777777777766553
No 163
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.62 E-value=22 Score=40.83 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=55.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 255 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 255 KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|-......+-..=+--+++-...++.|.+.+..|+.||..|..++..+..+..+|..++.-||.+|+.+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333445555566666777778888889999999999999999999999888889999999999988843
No 164
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=76.41 E-value=9.4 Score=29.86 Aligned_cols=32 Identities=16% Similarity=0.419 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
+..|+..+..++.||+.|+..|+.+.+....|
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554444
No 165
>PRK03918 chromosome segregation protein; Provisional
Probab=76.35 E-value=29 Score=38.58 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=10.6
Q ss_pred CCcccccCCCCCCCC
Q 016182 111 DGLAMSIGNASAESA 125 (394)
Q Consensus 111 ~Gl~ms~g~g~~~~~ 125 (394)
+|+++++|.+-+||+
T Consensus 23 ~g~~~i~G~nG~GKS 37 (880)
T PRK03918 23 DGINLIIGQNGSGKS 37 (880)
T ss_pred CCcEEEEcCCCCCHH
Confidence 367778887777764
No 166
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=76.35 E-value=37 Score=29.15 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhccc--ccCCCCchhhhhhhhcc
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNE--DKRVTPVSTENLLSRVN 352 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E~~~~~--~~~~~p~~~e~lls~~~ 352 (394)
.+.+++.+.+....|..|...+..-+.-..++...+++|+.+....+ .....++-.+ .....|.++-++|.++-
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~-e~ik~~lk~d~Ca~~~~P~~V~d~L~~~~ 109 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERR-ESIKTALKDDPCANTAVPDAVIDSLRRLH 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHccCccccCCCCHHHHHHHHHhh
Confidence 45666667777777777777777766666666666666666655432 1222222221 23567888888887763
No 167
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=76.14 E-value=3.5 Score=32.69 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
+++.|..++..|+..|..|..|+..|++
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555543
No 168
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=76.11 E-value=30 Score=31.92 Aligned_cols=37 Identities=35% Similarity=0.411 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 288 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 288 L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+..++..+..|++.|++++.+.+.|...|+.|.+.++
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888899998888765
No 169
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=75.70 E-value=3.1 Score=30.97 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 286 DSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 286 ~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
..|-..|..|..+|..|..++..|..||-.||+++
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34445566666666666666777777777777665
No 170
>smart00340 HALZ homeobox associated leucin zipper.
Probab=75.67 E-value=5.8 Score=29.69 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
.++-|.+=++.|..||.+|+.++..|+.
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666788888888888888888887753
No 171
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=75.66 E-value=12 Score=33.83 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+.....-+..|+.||.-|+..+-.+++-++.=+.....|+++|...|
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~q 126 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIMQ 126 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555668899999999999999999999999999999999998654
No 172
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=75.54 E-value=21 Score=30.08 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
++..|...+.+|..-...|..+...|..++..|...|++.|.+++.-
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555666677888888877654
No 173
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=75.38 E-value=4.8 Score=35.83 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQL 302 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L 302 (394)
|..-+|+|+.++..|+-||..|+.+|..-
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45668999999999999999999998653
No 174
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=75.19 E-value=52 Score=29.55 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 294 SLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 294 ~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.++.++.-|---+..|...+..+|.+|..+
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 344444444444555666777777777765
No 175
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.16 E-value=14 Score=31.57 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 276 AEAEELSRKVDSLIDENASL--KSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L--~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+.+++++.|+..|+.+...| +.++..|+-++.+++-+-+.|.++|+-+
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45556688888888888888 8888888888888888888888888765
No 176
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.11 E-value=33 Score=32.22 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQL 302 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L 302 (394)
...+.+|+.+...|+.+...|..++..+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 177
>PRK00846 hypothetical protein; Provisional
Probab=75.08 E-value=19 Score=29.84 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
-++|+.++..|+........-|..|.+.+.....+...|+.+|..+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999988888888888888888888888888888776
No 178
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=75.07 E-value=12 Score=29.82 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLS 303 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ 303 (394)
....++..++++++.|+.+|..|+.|+..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555555555555555555555543
No 179
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.95 E-value=56 Score=28.99 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
++.-|..++..|+.+-..|..+|-.|..
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~ 58 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLME 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444433334443333333
No 180
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=74.90 E-value=3.4 Score=30.76 Aligned_cols=42 Identities=31% Similarity=0.499 Sum_probs=11.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 257 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 299 (394)
Q Consensus 257 ~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei 299 (394)
+++...||+=|+..-... ..|.+|+.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 456677777777665544 346777777777777777777665
No 181
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=74.76 E-value=10 Score=32.15 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 281 LSRKVDSLIDEN-ASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 281 Le~rV~~L~~EN-~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
=+++|..|+.-- .....+|..|..++..|..||..|+.+|..
T Consensus 32 HE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 32 HETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566665222 235566777777777777777777777654
No 182
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=74.66 E-value=11 Score=29.97 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 290 DENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 290 ~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.....+..++..++++...+..||..|+.++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666777777777777664
No 183
>PRK04325 hypothetical protein; Provisional
Probab=74.60 E-value=16 Score=29.56 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccc
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGN 327 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l--ql~~ 327 (394)
.+..|+.++..|+.....+...|..|.+.+-....+...|+.+|..+ ++..
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999998888888889999998887 4444
No 184
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=74.56 E-value=58 Score=29.65 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+.++.++..+......+..++..+..++..++.+-..|+.++..
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 169 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLER 169 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666654344443444444444433
No 185
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=74.42 E-value=30 Score=30.35 Aligned_cols=22 Identities=45% Similarity=0.723 Sum_probs=17.5
Q ss_pred ccchHHHHHHHHHHHhHHHHHH
Q 016182 248 IQNERELKRERRKQSNRESARR 269 (394)
Q Consensus 248 ~~dErE~KR~RRk~sNRESARR 269 (394)
+.+||+.+.++|..+||||-+.
T Consensus 48 MKEER~K~E~~~q~r~rES~~E 69 (121)
T PF10669_consen 48 MKEERSKKEEKRQKRNRESKRE 69 (121)
T ss_pred HHHHHHHHHHHHHHHhhhhHHH
Confidence 5678888888899999998653
No 186
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.39 E-value=52 Score=31.23 Aligned_cols=41 Identities=34% Similarity=0.386 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
.+..++..++.+...|+-+...|.+++.+|..|-..|..+.
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444433
No 187
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=74.37 E-value=7.2 Score=43.04 Aligned_cols=45 Identities=33% Similarity=0.428 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+|-.+|++|..|+..|+.++...++-..+|+..++.|.++|+.+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~ 369 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKA 369 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999887777777777777777777665
No 188
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.26 E-value=16 Score=36.60 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
-=+.+++.|..+|+.+..+...+..++..+.+++.+|..+...|+++|.+-
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666667777777777777777777777777777777666666553
No 189
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=74.15 E-value=23 Score=36.16 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 264 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 264 RESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
-|+++|-....+.++.+++.....-+........+-+.+.+++..|.+||--|+++|..++
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888877777777788888899999999999999999999985
No 190
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=73.93 E-value=21 Score=39.05 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=20.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 260 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 312 (394)
Q Consensus 260 k~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~E 312 (394)
+++-|..+|..-.-=...+.+|+.++..++..+..|..++..|+.++..|..+
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~ 184 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREE 184 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33444444433322233334444444444444444433333333333333333
No 191
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.70 E-value=21 Score=32.87 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
.++.+++.|+.|......++..|+++.+.|
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444443333333444444444333
No 192
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.64 E-value=36 Score=30.58 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=27.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 256 RERRKQSNRESARRSRLRKQAEAEELSR-------KVDSLIDENASLKSEINQLSENSEK 308 (394)
Q Consensus 256 R~RRk~sNRESARRSR~RKq~~leeLe~-------rV~~L~~EN~~L~~ei~~L~ee~~~ 308 (394)
++.+++..-+.+...-.+|++.++.|+. +|..|+.+...+..++..++.++..
T Consensus 111 ~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 111 DRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEE 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556666666666655555542 4455555555555555444444333
No 193
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.62 E-value=23 Score=36.84 Aligned_cols=71 Identities=24% Similarity=0.398 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 250 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 250 dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
.+.++++.++.+-+|..|-.+-+|+.. |+|..=...|+++..+|..++..|+..++-|..--++-.+++++
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 444555555566666666655555544 44444444555555555555555555555554444443333333
No 194
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=73.38 E-value=65 Score=28.42 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 269 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 269 RSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
++..--|.-.++|..+-+.|+.-++.|..+...+.+.+..|..+...++..|.
T Consensus 23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555555555555555554443
No 195
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=72.97 E-value=6.7 Score=39.96 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 290 DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 290 ~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+...|..+|.+-.+++.....|...|..+|..+|
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555666666666665554
No 196
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=72.62 E-value=24 Score=28.01 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|+.++..|+.....+...|..|.+.+-....+...|+.+|..+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888888888888888888776
No 197
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=72.53 E-value=24 Score=27.78 Aligned_cols=36 Identities=33% Similarity=0.489 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 284 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
++++|..+.+.|..+|..|..+...|+.+-...+++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544444444444444333
No 198
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.40 E-value=51 Score=32.15 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+..++.|+..++..+..|+.++..|...|..|..+|..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 445555555566666666666666666666666666555
No 199
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=72.37 E-value=42 Score=28.51 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 299 INQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 299 i~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
|..|+.++..|..+...|...|..
T Consensus 83 i~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 83 IKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444433
No 200
>PHA03162 hypothetical protein; Provisional
Probab=72.21 E-value=2.7 Score=38.11 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 272 LRKQAEAEELSRKVDSLIDENASLKSEIN 300 (394)
Q Consensus 272 ~RKq~~leeLe~rV~~L~~EN~~L~~ei~ 300 (394)
-+++.-+|+|+.++..|+-||..|+.+|.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999993
No 201
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=72.05 E-value=49 Score=31.66 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
...|-.-...+..||..|+.++..|.+++..|...+..|..+-..++
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556678889999999999999999999988888888877664
No 202
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.03 E-value=41 Score=40.98 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=47.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 255 KRERRKQSNRESARRSRLRKQ-------------AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 255 KR~RRk~sNRESARRSR~RKq-------------~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
++.+...+.++.|++-+.-++ ..+++|+.+++.+..+...+..++..+..++..++.+...|+.++.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666655443322 2334444444444444444544444555455555555555544444
Q ss_pred Hhh--cccc-cchhcc--------cc---cCCCCchhhhhhhhccCCC
Q 016182 322 SAQ--LGNK-QEIVLN--------ED---KRVTPVSTENLLSRVNNSG 355 (394)
Q Consensus 322 ~lq--l~~~-~E~~~~--------~~---~~~~p~~~e~lls~~~~~~ 355 (394)
.++ +... .++..+ .. -..++++.|+|...+++-.
T Consensus 401 elqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~ 448 (1486)
T PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQ 448 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 321 1000 011111 11 1557888888887776643
No 203
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=71.89 E-value=26 Score=38.87 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 273 RKQAEAEELSRKVDSLIDE------------------------NASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~E------------------------N~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
.+.+++.+|+.++..+..+ |..|+.++..|...+..|..+|-.|...
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~ 189 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSA 189 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 6677778888777766544 4555666666666666666665444333
No 204
>PRK12705 hypothetical protein; Provisional
Probab=71.65 E-value=37 Score=36.83 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSE 307 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~ 307 (394)
|+.+.+.|......|..+-..|..+..
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~ 119 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSAREL 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333333333
No 205
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.56 E-value=52 Score=32.15 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccc
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK-LKSAQLGN 327 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~-L~~lql~~ 327 (394)
+..||.-+.+++.+....+..+.++.++|..|..+...||.. |+...|..
T Consensus 62 In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~ 112 (230)
T PF10146_consen 62 INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLPS 112 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 344566666666666667777777777777777777777766 55444433
No 206
>PRK14162 heat shock protein GrpE; Provisional
Probab=71.40 E-value=16 Score=34.83 Aligned_cols=36 Identities=17% Similarity=0.388 Sum_probs=18.0
Q ss_pred hhhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCC
Q 016182 343 STENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASP 386 (394)
Q Consensus 343 ~~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~ 386 (394)
....|+..+...|=..- .-.++ .=.+.||+-+..-+
T Consensus 125 i~k~l~~vL~~~GV~~I--~~~G~------~FDP~~HEAv~~~~ 160 (194)
T PRK14162 125 TLDHLVKALKDHGVTEI--KADGE------KFDPTLHQAVQTVA 160 (194)
T ss_pred HHHHHHHHHHHCCCEEe--CCCCC------CCChhHhhhheeec
Confidence 35556666666654311 11111 22477888886433
No 207
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=71.32 E-value=20 Score=29.83 Aligned_cols=37 Identities=32% Similarity=0.383 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 311 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~ 311 (394)
|.-|+.|-.+|+..+.||..|..++..|++=...|..
T Consensus 29 Q~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 29 QDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555544443
No 208
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.28 E-value=75 Score=29.01 Aligned_cols=71 Identities=23% Similarity=0.228 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 250 NERELKRERRKQSNR----ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 250 dErE~KR~RRk~sNR----ESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
-+.++||.+|.-.|= ++..|--.--+...+.+....+.-++++..|..++..+..+...|..|...|+.+-
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555533221 22223333333444444444444444444444444444444444444433333333
No 209
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=71.26 E-value=63 Score=31.12 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 251 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 251 ErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+-|++|. +++...+-..|.-..-+++...|...+..-+.+-.....+-..++.+...|..|...++.+|..+|
T Consensus 102 ~~eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ 174 (192)
T PF11180_consen 102 DVEIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ 174 (192)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 455666667777777778888888888777777777777777777777777777777777777664
No 210
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=71.23 E-value=39 Score=25.29 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 299 INQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 299 i~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+..|..++..|..+|..|+.++..|
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555443
No 211
>PRK02224 chromosome segregation protein; Provisional
Probab=70.97 E-value=43 Score=37.52 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 271 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 271 R~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
+.+++.++.+|+.+++.|+.....+..++....+++..|..+...|++.+
T Consensus 504 ~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 504 LVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544444444444444444444444444444
No 212
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=70.88 E-value=20 Score=32.04 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 312 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~E 312 (394)
.|..-+++|+.+++.|+-+...|.++-..+++++.+|..+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777776666666666666655555543
No 213
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.80 E-value=62 Score=32.82 Aligned_cols=54 Identities=26% Similarity=0.424 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 016182 269 RSRLRKQAEAEELSRKVDSLIDENASLKSEIN---QLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 269 RSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~---~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
|+.+-+---++++++++++.-..|.-|..++. .|-+.++.|..|-+.||++|.-
T Consensus 126 rakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 126 RAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556688999999999999998888775 4667888899999999998864
No 214
>PRK11546 zraP zinc resistance protein; Provisional
Probab=70.78 E-value=12 Score=34.29 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 325 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql 325 (394)
+=+..+++|.+++-.-+.|.+.|...-.-=.+...+|..|...|+.+|.+.++
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444333345566777777777777776543
No 215
>PRK00736 hypothetical protein; Provisional
Probab=70.36 E-value=28 Score=27.76 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
++.++..|+.....+..-|..|.+.+-.-..+...|+.+|..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888887777777777777777777777777777776
No 216
>PRK15396 murein lipoprotein; Provisional
Probab=70.35 E-value=29 Score=28.78 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+++.|..+|+.|..+...|...+..++........|-..-.++|.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777776666666666666666665555555544455443
No 217
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=70.23 E-value=29 Score=36.23 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 278 AEELSRKVDSLIDENASLKSEIN--------------QLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~--------------~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+++-+.+.++|+..|+.|..++- .|..-...++.||..|..+|..+.
T Consensus 94 ~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 94 VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444455555556665555543 444556777888999988888773
No 218
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=70.10 E-value=60 Score=32.48 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccchhcc
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIVLN 334 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq--l~~~~E~~~~ 334 (394)
+...+-....+|..+..++..-++....|+.+...|+++++.++ ....+|+++.
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~ 232 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFA 232 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhH
Confidence 44556677899999999999999999999999999999999985 3344666653
No 219
>PF15556 Zwint: ZW10 interactor
Probab=69.93 E-value=77 Score=31.19 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=34.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 260 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 260 k~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
+.+.|.+-+.=.+....++..|......++..-..-..++..|.+++..|..+-..-+.+|.
T Consensus 118 ~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQ 179 (252)
T PF15556_consen 118 MEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQ 179 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445444444455556666666666666655555556666666666555555444444443
No 220
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.86 E-value=51 Score=38.51 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHh
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSEN---------------SEKLRQENAALLEKLKSA 323 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee---------------~~~L~~EN~~Lr~~L~~l 323 (394)
+.|+.+|+.|+..+.+|...++.|+.+ +.+|+.+|..||.-|-.+
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRL 387 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555543 235566666666655444
No 221
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=69.73 E-value=42 Score=31.86 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+.++.|+.++..++.....|..+|..|+.++..+...-..|..+...++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777776554
No 222
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=69.56 E-value=37 Score=28.26 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+|..++..-+.|+..|..-+..|+.++.+...-|..|..++..+
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~ 52 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNL 52 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433
No 223
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.47 E-value=14 Score=36.16 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 270 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 270 SR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
+-.-=+.++++|+.+|..|+-+++++..+|++++++-..|..+...+..++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334568999999999999999999999999999999999988877765544
No 224
>PRK14161 heat shock protein GrpE; Provisional
Probab=69.40 E-value=17 Score=34.20 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=9.2
Q ss_pred hhhhhhhhcCCCcc
Q 016182 375 GAKLHQLLDASPRT 388 (394)
Q Consensus 375 ~~kl~qll~~~~r~ 388 (394)
.+.||+-+..-+..
T Consensus 132 DP~~HEAv~~~~~~ 145 (178)
T PRK14161 132 DYNLHNAISQIEHP 145 (178)
T ss_pred ChHHhhhheeeCCC
Confidence 47788877665543
No 225
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=69.36 E-value=16 Score=37.40 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 317 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr 317 (394)
|+.++++|+..+..|..++..++++..+|+.++..|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555555555555544444444444444444333
No 226
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=69.34 E-value=45 Score=38.00 Aligned_cols=48 Identities=31% Similarity=0.396 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 276 AEAEELSRKVDSLIDENASLKS---------------------EINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~---------------------ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.++.++..++..+..||..|.. ++..|..+++.++.||..||-+|..+
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443 33344455555555555555555443
No 227
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=69.33 E-value=21 Score=37.64 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 265 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 265 ESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
++|.--|.|-.+--...+..++.|..|...|+.+++++.....-|..|+..||+-++.+
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdl 285 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDL 285 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45555566666666666777777888888888888888888888888888888777665
No 228
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=69.27 E-value=17 Score=39.16 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
+++|+.|+++++.|..+...|..+|+.|..++..|+.+...++.++.
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 44566667777777777777777777777777777777666666544
No 229
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=69.21 E-value=22 Score=28.85 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 314 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~ 314 (394)
.+.+|......-..+|..|..+|..|.+++..|...-.
T Consensus 29 sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 29 SYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544433
No 230
>PRK14143 heat shock protein GrpE; Provisional
Probab=69.20 E-value=11 Score=37.06 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=18.8
Q ss_pred hhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCC
Q 016182 344 TENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASP 386 (394)
Q Consensus 344 ~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~ 386 (394)
...|+..+...|=..-. -.++. =.+.||+-+..-+
T Consensus 155 ~k~l~~~L~k~GV~~i~--~~G~~------FDP~~HEAv~~~~ 189 (238)
T PRK14143 155 YKQLVDVLKRLGVSPMR--VVGQE------FDPNLHEAVLREP 189 (238)
T ss_pred HHHHHHHHHHCCCeeeC--CCCCC------CChHHhheeeeec
Confidence 56677777766654211 11122 2467888775444
No 231
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.09 E-value=28 Score=30.59 Aligned_cols=73 Identities=25% Similarity=0.369 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 016182 250 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQ----LSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 250 dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~----L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+-..|-++-++..-+.+..-..=| +++.++..++..|+.+....+..+.. +.++-..|..|...++.++.++
T Consensus 41 ~~Aq~~YE~El~~Ha~~~~~L~~lr-~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 41 QEAQQKYERELVKHAEDIKELQQLR-EELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666776666655544333 23577777777777777776666654 4455667777888888887776
No 232
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=68.98 E-value=20 Score=37.27 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
|+.+...|+.++..|..++..+..++..++.|...|+.+|..++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556777777777777777777777777777777777764
No 233
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=68.98 E-value=14 Score=39.66 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 326 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~ 326 (394)
|+.|+.....-..++..|+++.+.|+.+|..|.++|+.+|..
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 567788888888889999999999999999999999998743
No 234
>PRK14154 heat shock protein GrpE; Provisional
Probab=68.96 E-value=18 Score=35.05 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=20.3
Q ss_pred hhhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCCcc
Q 016182 343 STENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRT 388 (394)
Q Consensus 343 ~~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r~ 388 (394)
....|+..+...|=..-.. ..++ .=.+.||+-+..-+..
T Consensus 139 i~k~l~~vL~k~GVe~I~~-~~G~------~FDP~~HEAv~~~~~~ 177 (208)
T PRK14154 139 TLDLLHNTLAKHGVQVINP-NPGD------PFDPALHEAMSVQAVP 177 (208)
T ss_pred HHHHHHHHHHHCCCEEecC-CCCC------CCChhHhheeeeeCCC
Confidence 3566777777666541110 1111 2357788888654433
No 235
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=68.86 E-value=41 Score=38.94 Aligned_cols=66 Identities=27% Similarity=0.269 Sum_probs=46.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 259 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 259 Rk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
-.++.-++++.+.....++..+|..+|+.|..+-..+..+.+.....++.|+.|...|..++..++
T Consensus 449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888877777778888888877777777666666666666666666666666666554
No 236
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=68.84 E-value=15 Score=36.65 Aligned_cols=45 Identities=33% Similarity=0.361 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.++.+|..+-+.|+.++.+| ..+..+...|+.||..||..|...+
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~----~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 66 KSLKDLALENEELKKELAEL----EQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 33444444444444443332 2334456779999999999987654
No 237
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.83 E-value=22 Score=39.16 Aligned_cols=46 Identities=37% Similarity=0.467 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
.++++|..+++.+..+...|..++..+.+++.....++..|.+++.
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666666655554
No 238
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.70 E-value=58 Score=34.63 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
++|..-...+..+..+|..++..|.++..+|..+...|+.+|..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555556666677777777777777777777777777655
No 239
>PF14282 FlxA: FlxA-like protein
Probab=68.68 E-value=22 Score=30.42 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 279 EELSRKVDSLID----ENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 279 eeLe~rV~~L~~----EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
..|..++..|.. ....-..++..|..++..|..+...|..+...
T Consensus 29 ~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 29 KQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444 11233444555555555555555555555443
No 240
>PHA03155 hypothetical protein; Provisional
Probab=68.54 E-value=6.4 Score=34.92 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQ 301 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~ 301 (394)
.-+|+|+.++..|+-||..|+.+|..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34799999999999999999999854
No 241
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=68.24 E-value=50 Score=31.79 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 283 RKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 283 ~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
.++..|+.|...++.+|..|++++..|
T Consensus 154 ~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 154 QEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 242
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=67.73 E-value=17 Score=37.37 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+..|..++..|+.++..|+.++..|..++..+..+...|++++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788888999999999999999999999999999999999998875
No 243
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=67.50 E-value=24 Score=35.47 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcccccCCCCchhhhhhhhccCCCC
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGT 356 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E~~~~~~~~~~p~~~e~lls~~~~~~~ 356 (394)
-.+.|+.++..|++||..|+.+++.++.++.....=...+-..|-.-+|....=++. .......-..+.+...|...|.
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv~g~L~g~~V~vV-~~p~a~~~~~~~v~~~L~~AGA 111 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRLVAGRLTGRSVAVV-TLPGADDEDVDAVRELLEQAGA 111 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCEEEEE-EcCCCChHHHHHHHHHHHHCCC
Confidence 456777888888888888888888777666555444444444443323333222222 1111222235666666666766
Q ss_pred CCCccccccccccccCCchhhhhhhhcC
Q 016182 357 VDRNMEEGGHLFEKNSNSGAKLHQLLDA 384 (394)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~kl~qll~~ 384 (394)
..-..-.=.+-|- ++....+|.+|+..
T Consensus 112 ~v~g~i~lt~~~~-d~~~~~~l~~~~~~ 138 (308)
T PF11382_consen 112 TVTGRITLTDKFL-DPEQADKLRSLAAQ 138 (308)
T ss_pred eEEEEEEEchhhc-ChhhHHHHHHHHhh
Confidence 5422211111222 34466777777776
No 244
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=67.49 E-value=21 Score=30.91 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
-+.|...+..|..++..+.+++.+|+.++..+.+++..++
T Consensus 75 q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 75 QEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666553
No 245
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.48 E-value=27 Score=29.14 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016182 306 SEKLRQENAALLEKLKSA 323 (394)
Q Consensus 306 ~~~L~~EN~~Lr~~L~~l 323 (394)
...|..+-..|+.+|..+
T Consensus 69 ~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKEL 86 (108)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444555554443
No 246
>PRK14148 heat shock protein GrpE; Provisional
Probab=67.36 E-value=15 Score=35.06 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=9.5
Q ss_pred hhhhhhhhcCCCcc
Q 016182 375 GAKLHQLLDASPRT 388 (394)
Q Consensus 375 ~~kl~qll~~~~r~ 388 (394)
.+.|||-+..-+..
T Consensus 150 DP~~HEAv~~~~~~ 163 (195)
T PRK14148 150 DPNLHEAMAMIPNP 163 (195)
T ss_pred ChhHhheeeeeCCC
Confidence 47788888766543
No 247
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=67.21 E-value=30 Score=31.22 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
++-.++..|..++..|+.+...|..++..+..
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544443
No 248
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.03 E-value=1.8 Score=47.71 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 248 IQNERELKRERRKQSNR-ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 307 (394)
Q Consensus 248 ~~dErE~KR~RRk~sNR-ESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~ 307 (394)
+.||-+.=|.+.-.-.| |..-..=++|.+.+++|..+|..|+.+|..|...+..|.+++.
T Consensus 296 LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~ 356 (713)
T PF05622_consen 296 LRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK 356 (713)
T ss_dssp -------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776665555533333 4444444567788999999999999999888877776665543
No 249
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.87 E-value=43 Score=38.56 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016182 314 AALLEKLK 321 (394)
Q Consensus 314 ~~Lr~~L~ 321 (394)
.+|.++|+
T Consensus 489 ~qlqarik 496 (1118)
T KOG1029|consen 489 DQLQARIK 496 (1118)
T ss_pred HHHHHHHH
Confidence 33333333
No 250
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=66.85 E-value=33 Score=29.72 Aligned_cols=44 Identities=25% Similarity=0.423 Sum_probs=26.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 262 SNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 305 (394)
Q Consensus 262 sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee 305 (394)
.-||.|+.-+-=++.+.|.|+.--+.|..|...-+.+|..|.+.
T Consensus 55 ~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 55 GKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666665555666555566666665443
No 251
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=66.75 E-value=43 Score=35.69 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
+.++.+|+.++..++.+..+....+..+++++..+
T Consensus 65 ~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 65 EKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 33444444444444444444433333333333333
No 252
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=66.54 E-value=40 Score=33.11 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 265 ESARRSRLRKQAE----AEELSRKVDSLIDENASLKSEINQLSENSE 307 (394)
Q Consensus 265 ESARRSR~RKq~~----leeLe~rV~~L~~EN~~L~~ei~~L~ee~~ 307 (394)
+|+-.--+||--. -..++.++..|+.++..|..+|+.++.+++
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e 216 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLE 216 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4555555565432 334666667777777777766666655443
No 253
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=66.46 E-value=19 Score=39.24 Aligned_cols=44 Identities=9% Similarity=0.276 Sum_probs=30.3
Q ss_pred ccchHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 248 IQNERELKRERR---KQSNRESARRSRLRKQAEAEELSRKVDSLIDE 291 (394)
Q Consensus 248 ~~dErE~KR~RR---k~sNRESARRSR~RKq~~leeLe~rV~~L~~E 291 (394)
++-.++.++.++ ...++-.++...+-+++.+++++++|+.|+..
T Consensus 160 L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 160 LKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 444555554444 44455566666777788999999999998875
No 254
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=66.30 E-value=24 Score=36.69 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
|..|+|++.+++.-..||..+.+++.+++.-|..|...-.+|++.|..
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999998888853
No 255
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.16 E-value=32 Score=33.62 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 282 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 282 e~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
...+..|+.....++.+....++....|..|...|+.++..++
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777777777777777777777777777776663
No 256
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=66.03 E-value=22 Score=30.59 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.||..++...+.|-.-|+..|.. |+.+|..|..+|..++
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~e-------le~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSE-------LEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 45555555555555555555555 4555555555555543
No 257
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=66.00 E-value=14 Score=38.02 Aligned_cols=38 Identities=32% Similarity=0.232 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 016182 284 KVDSLIDENASLKSEINQLSEN---SEKLRQENAALLEKLK 321 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee---~~~L~~EN~~Lr~~L~ 321 (394)
..-.|.+||++|+.|+.+|+.+ ++.+..||..|+..+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455556666666666555433 3445677877776554
No 258
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=65.89 E-value=23 Score=29.10 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 289 IDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 289 ~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
..+...+..++..++.+..+|..||..|+.++..+
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566666666666666666666666554
No 259
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.84 E-value=81 Score=28.34 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 267 ARRSRLRKQAEAEELSRKVDSLIDENASLK-------SEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 267 ARRSR~RKq~~leeLe~rV~~L~~EN~~L~-------~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+-.-|.++..+++.++..+...+.+...|. .+|..|++++..++.+-..++.++..+
T Consensus 108 ~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 108 TLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555554443 245555555555555555444444443
No 260
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=65.70 E-value=8.5 Score=39.48 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccccchhc
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGNKQEIVL 333 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l--ql~~~~E~~~ 333 (394)
|+.|+..|++|..+|..-++++.-|..-|++--.++..| .+..+||++|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiL 52 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAIL 52 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665555554444444443 2444455543
No 261
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=65.53 E-value=90 Score=30.45 Aligned_cols=78 Identities=24% Similarity=0.302 Sum_probs=39.6
Q ss_pred ccccchHHHHHHHHHHH--hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 016182 246 TWIQNERELKRERRKQS--NRE--SARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK-------LRQENA 314 (394)
Q Consensus 246 ~~~~dErE~KR~RRk~s--NRE--SARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~-------L~~EN~ 314 (394)
.|..-+.+++..|+.+. +++ -..--+..=+..+++|..+++.....+..|..++..|+..++. |..+..
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 45556666666665432 111 1111222224555666666666666666666666666555554 444455
Q ss_pred HHHHHHHHh
Q 016182 315 ALLEKLKSA 323 (394)
Q Consensus 315 ~Lr~~L~~l 323 (394)
.|+.+|..+
T Consensus 128 ~L~eEl~fl 136 (312)
T PF00038_consen 128 SLKEELEFL 136 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 262
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=65.47 E-value=1.1e+02 Score=27.98 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
.|..++...+.+...++.++..++.+...+..+|..|+.+..
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333344444444444444444444444444444444444443
No 263
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.44 E-value=1.1e+02 Score=28.67 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+++.|+..+..+......|+..|..|..++..+..+-..|+.+....
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666666666666655555555443
No 264
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=65.41 E-value=13 Score=32.56 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 284 KVDSLIDENASLKSEINQLSENSEK 308 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~~ 308 (394)
+..+|++||+-|+-+|+.|-..+..
T Consensus 80 k~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888877554433
No 265
>PRK14158 heat shock protein GrpE; Provisional
Probab=65.09 E-value=29 Score=33.15 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=19.7
Q ss_pred hhhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCCc
Q 016182 343 STENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPR 387 (394)
Q Consensus 343 ~~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r 387 (394)
....|+..+...|-..-.. .-++ .=.+.||+-+..-+.
T Consensus 125 i~k~l~~vLek~Gv~~I~~-~~G~------~FDP~~HEAv~~~~~ 162 (194)
T PRK14158 125 TLSMLLSTLKKFGVTPVEA-EKGT------PFDPAYHQAMCQVES 162 (194)
T ss_pred HHHHHHHHHHHCCCEEecC-CCCC------CCChHHhhhheeecC
Confidence 3556677776666541100 0011 235788988865443
No 266
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=65.09 E-value=21 Score=36.27 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccchh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIV 332 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq--l~~~~E~~ 332 (394)
.-+++-|..+++.|+.....|+.++.....+++.+......|+.++..++ |....++|
T Consensus 111 ~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 111 MYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888888888888877777777888888888888888773 55554543
No 267
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.01 E-value=54 Score=38.60 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
++..+++.|.-++++|+.+...+..++..+..++..|..|+..|+.++...
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344556777777777888877788888888888888888887777777655
No 268
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=64.87 E-value=82 Score=26.27 Aligned_cols=17 Identities=35% Similarity=0.349 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDEN 292 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN 292 (394)
.++++|..+.+.+..+.
T Consensus 43 ~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 43 QELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 33444444444444333
No 269
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.87 E-value=24 Score=38.59 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
-+++++.+..++..+..||..|..+|..++++...+..|+..|.+.|...
T Consensus 217 ~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~ 266 (596)
T KOG4360|consen 217 GQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAY 266 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777888888888888888888888888888887777653
No 270
>PRK03918 chromosome segregation protein; Provisional
Probab=64.76 E-value=73 Score=35.52 Aligned_cols=7 Identities=0% Similarity=0.396 Sum_probs=3.6
Q ss_pred hhhhhhc
Q 016182 345 ENLLSRV 351 (394)
Q Consensus 345 e~lls~~ 351 (394)
..+++.+
T Consensus 750 ~~if~~l 756 (880)
T PRK03918 750 SEIFEEL 756 (880)
T ss_pred HHHHHHH
Confidence 4455555
No 271
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=64.61 E-value=9.4 Score=35.73 Aligned_cols=28 Identities=32% Similarity=0.550 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 293 ASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 293 ~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
..|+.++++|+.|+..|..|. .+++++.
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 345555555555555555565 5555554
No 272
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=64.59 E-value=22 Score=36.12 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=12.4
Q ss_pred CCCCchhhhhhhhcc--CCCC
Q 016182 338 RVTPVSTENLLSRVN--NSGT 356 (394)
Q Consensus 338 ~~~p~~~e~lls~~~--~~~~ 356 (394)
.+.-.+.|.||..+. ..|+
T Consensus 155 NiQN~KLEsLLqsMElAq~g~ 175 (305)
T PF15290_consen 155 NIQNKKLESLLQSMELAQSGS 175 (305)
T ss_pred hhhHhHHHHHHHHHHHHHhcc
Confidence 444556889998665 4555
No 273
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=64.38 E-value=47 Score=26.05 Aligned_cols=37 Identities=30% Similarity=0.264 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
...|+.-|..|..+. .|.+++..|+.||.+||.-|+.
T Consensus 22 ~~~l~rY~~vL~~R~-~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 22 ENFLKRYNKVLLDRA-ALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666644 4556679999999999988763
No 274
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=64.20 E-value=43 Score=27.49 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENS--------------EKLRQENAALLEKLKSA 323 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~--------------~~L~~EN~~Lr~~L~~l 323 (394)
+..|+.+-+.+.-|+-.|+.++..+++++ .+|..|..++|+.|..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 34555566666666666666666666554 34555566666655543
No 275
>PRK14155 heat shock protein GrpE; Provisional
Probab=63.84 E-value=20 Score=34.50 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=20.3
Q ss_pred hhhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCCcc
Q 016182 343 STENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRT 388 (394)
Q Consensus 343 ~~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r~ 388 (394)
....|+..+.+.|-..-.. ..++ .=.+.||+-+..-+..
T Consensus 102 i~k~~~~~L~k~GV~~I~~-~~G~------~FDP~~HEAv~~~~~~ 140 (208)
T PRK14155 102 TEKELLGAFERNGLKKIDP-AKGD------KFDPHLHQAMMEQPST 140 (208)
T ss_pred HHHHHHHHHHHCCCceecC-CCCC------CCChhHhceeeeecCC
Confidence 3566777777666541110 0111 2346788877655543
No 276
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.79 E-value=51 Score=33.92 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 292 NASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 292 N~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+..|..-+...++++..|..|...|+++|.+++
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667778888888888888888888876
No 277
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=63.74 E-value=28 Score=35.61 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 289 IDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 289 ~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+.|...|..+|..|++++..+..||..|...|..
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444455555555556666666666666665544
No 278
>PRK10698 phage shock protein PspA; Provisional
Probab=63.72 E-value=1e+02 Score=29.74 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+.+..|+.+++.+......|...+..|+.++..++..-..|..+...+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777777777777777777665
No 279
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=63.52 E-value=36 Score=31.22 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 284 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
+++.|......|...|..|.++...|..++++|-++..
T Consensus 102 ~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 102 RIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555443
No 280
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.46 E-value=68 Score=32.62 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 311 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~ 311 (394)
++..|..++..+..++...+.++..+++++..|..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~ 239 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELES 239 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333
No 281
>PHA02682 ORF080 virion core protein; Provisional
Probab=63.43 E-value=21 Score=34.86 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcccccCCCCchhhhhhhhccCC
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNS 354 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E~~~~~~~~~~p~~~e~lls~~~~~ 354 (394)
|.++.++...|..|..|-..|..+|+..++-....-...+.|...-.-.+ -...--|+.||||.
T Consensus 214 kkeladiadsvrdl~aeS~~LtrDIE~AKstTq~AIdDLRrLl~~~~v~~----------------~~tps~l~drvdnt 277 (280)
T PHA02682 214 KKELADIADSVRDLNAESLSLTRDIENAKSTTQAAIDDLRRLLTGGGVAR----------------RDTPSALRDRVDNT 277 (280)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHhcCCccc----------------cCChHHHHHhhhcc
Confidence 45678899999999999999999999987766655444443332211110 01234577899998
Q ss_pred CC
Q 016182 355 GT 356 (394)
Q Consensus 355 ~~ 356 (394)
|.
T Consensus 278 gt 279 (280)
T PHA02682 278 GT 279 (280)
T ss_pred CC
Confidence 86
No 282
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=63.42 E-value=76 Score=29.53 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=8.7
Q ss_pred cCCCCchhhhhhh
Q 016182 337 KRVTPVSTENLLS 349 (394)
Q Consensus 337 ~~~~p~~~e~lls 349 (394)
....+|.+++||.
T Consensus 76 ~~~~~v~~~eLL~ 88 (188)
T PF10018_consen 76 AEKRPVDYEELLS 88 (188)
T ss_pred cccCCCCHHHHHH
Confidence 3556777777775
No 283
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=63.38 E-value=15 Score=29.17 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
.++..|+.-+..|+.|-... +..|-.+.+.|..+|..|.-+|.+
T Consensus 3 ~qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~kL~m 46 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTFKLIM 46 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccceeeee
Confidence 34556666777777665542 233444555555566655555543
No 284
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=63.30 E-value=86 Score=33.37 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+..|.+-...+..++..|..+...|..+.+.|+++|..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 165 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ 165 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777777777777788888777764
No 285
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=63.25 E-value=1.2e+02 Score=29.51 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+...|+..+..++.+...+...+..|+..+..|+.....|+.++..+
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666666666666666554
No 286
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=63.24 E-value=65 Score=28.74 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEI-NQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei-~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+..++...+..|..++......+ ..+.++....+.....+..+|.+|
T Consensus 90 ~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 90 CENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 556666666666666655555555 344444455555556666655543
No 287
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=62.98 E-value=66 Score=37.87 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
+++++..++..|+.....|..++..+.+++..+..+...++.++
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKEL 483 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333333333
No 288
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=62.97 E-value=81 Score=32.62 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016182 253 ELKRERRKQSNRESARRSRLRKQAEA 278 (394)
Q Consensus 253 E~KR~RRk~sNRESARRSR~RKq~~l 278 (394)
..+++|+++++|...-..=+||..++
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788877766666664443
No 289
>PRK02224 chromosome segregation protein; Provisional
Probab=62.87 E-value=76 Score=35.59 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=6.2
Q ss_pred HHHhHHHHHHHHHHH
Q 016182 260 KQSNRESARRSRLRK 274 (394)
Q Consensus 260 k~sNRESARRSR~RK 274 (394)
.+++|....|.|...
T Consensus 624 ~~~~~l~~~r~~i~~ 638 (880)
T PRK02224 624 ERRERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 290
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=62.73 E-value=35 Score=35.02 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 270 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 270 SR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
-|.+..+++++|+.+.+.|.++|...+..+..|..++..|..--.-|+..|..
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 47778888999999999999999999999999999998888777777777643
No 291
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=62.70 E-value=25 Score=27.78 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQL 302 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L 302 (394)
++||+.++..|+.|..+|+.++..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888877777776654
No 292
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=62.63 E-value=53 Score=37.22 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 016182 283 RKVDSLIDENASLKSEINQLSE----------NSEKLRQENAALLEKLKS 322 (394)
Q Consensus 283 ~rV~~L~~EN~~L~~ei~~L~e----------e~~~L~~EN~~Lr~~L~~ 322 (394)
+....|+.||-.|.++|..|++ ++..|+.|+..|+.+|.+
T Consensus 97 ~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777766653 344445555555555544
No 293
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=62.51 E-value=29 Score=36.84 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016182 264 RESARRSRLRKQAEAEEL 281 (394)
Q Consensus 264 RESARRSR~RKq~~leeL 281 (394)
.|==||.|..=...+.||
T Consensus 238 NeVERRRR~nIN~~IkeL 255 (411)
T KOG1318|consen 238 NEVERRRRENINDRIKEL 255 (411)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444454444444444
No 294
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=62.27 E-value=87 Score=29.02 Aligned_cols=44 Identities=27% Similarity=0.473 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+|..+|+.|+.+|..|...+..+..+...|......|+.++..+
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l 136 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL 136 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555444444
No 295
>PRK14140 heat shock protein GrpE; Provisional
Probab=62.26 E-value=31 Score=32.88 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=19.6
Q ss_pred hhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCCccc
Q 016182 344 TENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTD 389 (394)
Q Consensus 344 ~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r~d 389 (394)
...|+..+...|=. .....++ .=.+.+|+-+..-+..|
T Consensus 124 ~k~l~~~L~k~GV~--~i~~~Ge------~FDP~~HEAv~~~~~~~ 161 (191)
T PRK14140 124 HRQLLEALKKEGVE--VIEAVGE------QFDPNLHQAVMQDEDED 161 (191)
T ss_pred HHHHHHHHHHCCCE--eeCCCCC------CCChHHhccceeeCCCC
Confidence 55566666655542 1111112 23577888877655443
No 296
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=62.19 E-value=12 Score=33.44 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 299 INQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 299 i~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
++.|..++.+|..||..||.+|..-
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5667777888899999999999763
No 297
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.92 E-value=67 Score=38.26 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 016182 268 RRSRLRKQAEAEEL 281 (394)
Q Consensus 268 RRSR~RKq~~leeL 281 (394)
+..+.+++.++.+|
T Consensus 849 ~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 849 RKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 298
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=61.85 E-value=29 Score=31.72 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 016182 273 RKQAEAEELSRKVDSLID---ENASLKSEINQLSENSE 307 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~---EN~~L~~ei~~L~ee~~ 307 (394)
--+.+|.+...+++.|+. .|..|+.+|..|+.++.
T Consensus 31 ~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 31 NLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 334444455555555554 44445555555544444
No 299
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=61.44 E-value=28 Score=30.02 Aligned_cols=31 Identities=42% Similarity=0.532 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENS 306 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~ 306 (394)
++.+=|.+++..|+.+|..|..++++++..+
T Consensus 15 EEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 15 EEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444566667777777777777777666544
No 300
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.39 E-value=41 Score=37.45 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=27.4
Q ss_pred HHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 259 RKQSNRESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSEN 305 (394)
Q Consensus 259 Rk~sNRESARRSR~RK-q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee 305 (394)
+-..+|..+.+.+..+ +.+..+|+.+++.|+.++..|..++..++++
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544433 3456666666666666666666666665543
No 301
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=61.30 E-value=54 Score=27.66 Aligned_cols=31 Identities=32% Similarity=0.425 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 294 SLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 294 ~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+..++..|...+..+..+|..|.++|...+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677788899999999999999999998653
No 302
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=61.28 E-value=70 Score=29.91 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+++.++..|+.....+...+..|+..+..|+.....|+.+...+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555544
No 303
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=61.19 E-value=17 Score=32.32 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 254 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASL 295 (394)
Q Consensus 254 ~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L 295 (394)
..|..|+.++||.+ .++++++|+.+++.|+.+...+
T Consensus 96 ~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 96 YWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544432 2345555666666555555444
No 304
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=61.11 E-value=62 Score=33.00 Aligned_cols=65 Identities=28% Similarity=0.284 Sum_probs=37.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Q 016182 260 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS----------------------------ENSEKLRQ 311 (394)
Q Consensus 260 k~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~----------------------------ee~~~L~~ 311 (394)
++-.-++--.+-.|-++.+++-..++..|+.||+.|......|. .+++.|+.
T Consensus 37 rQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leq 116 (307)
T PF10481_consen 37 RQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQ 116 (307)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444455555555666677777776666555443 34456666
Q ss_pred HHHHHHHHHHHhh
Q 016182 312 ENAALLEKLKSAQ 324 (394)
Q Consensus 312 EN~~Lr~~L~~lq 324 (394)
|+..|+.+|...|
T Consensus 117 elkr~KsELErsQ 129 (307)
T PF10481_consen 117 ELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776664
No 305
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=60.96 E-value=31 Score=33.47 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEIN 300 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~ 300 (394)
+.+|.++.+.|++||..|+.++.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 306
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.80 E-value=31 Score=38.07 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
++++++|+.+++.|..+...|..++..++.++..+..|..+++..+..+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555444444443
No 307
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=60.74 E-value=41 Score=37.52 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.9
Q ss_pred hhhhcCCCccccc
Q 016182 379 HQLLDASPRTDAV 391 (394)
Q Consensus 379 ~qll~~~~r~dav 391 (394)
+.||.+.+..+-+
T Consensus 211 q~l~~~~~~~~~~ 223 (632)
T PF14817_consen 211 QSLLESFPAYGSS 223 (632)
T ss_pred HHHhcccccCCCC
Confidence 4444444444433
No 308
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=60.71 E-value=54 Score=27.29 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
+.+.+.+++.|..-...|+.++....+-+.+|..++..++..
T Consensus 14 L~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 14 LNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555555555666667777777777777777777764
No 309
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=60.67 E-value=89 Score=30.22 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=30.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 260 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 316 (394)
Q Consensus 260 k~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~L 316 (394)
+..--|.+.+.|....++.++|+.++..|+.+...|+.++..+++.--........+
T Consensus 100 l~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~ 156 (203)
T KOG3433|consen 100 LGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHL 156 (203)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 333344555566666666666666666666666666666655554433333333333
No 310
>PHA02109 hypothetical protein
Probab=60.50 E-value=24 Score=33.84 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 308 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~ 308 (394)
|.+++-+|+.+++.|..|-.+|+.+|..++++...
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~ 225 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKR 225 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666555554443
No 311
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=60.43 E-value=44 Score=26.49 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLR 310 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~ 310 (394)
++.++..|+..+..+..++..+.+++.++.
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 312
>PRK14139 heat shock protein GrpE; Provisional
Probab=60.36 E-value=38 Score=32.18 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=19.1
Q ss_pred hhhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCC
Q 016182 343 STENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASP 386 (394)
Q Consensus 343 ~~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~ 386 (394)
....|+..+...|=..-.. .++. =.+.||+-+..-+
T Consensus 116 i~k~l~~vL~k~Gv~~I~~--~G~~------FDP~~HEAv~~~~ 151 (185)
T PRK14139 116 TLKQLTSAFEKGRVVEINP--VGEK------FDPHQHQAISMVP 151 (185)
T ss_pred HHHHHHHHHHHCCCceeCC--CCCC------CChHHhheeeeec
Confidence 3556777776665542111 1122 3467888776554
No 313
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.15 E-value=49 Score=35.39 Aligned_cols=45 Identities=29% Similarity=0.304 Sum_probs=28.0
Q ss_pred HHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 260 KQSNRESARRSRLRK-----QAEAEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 260 k~sNRESARRSR~RK-----q~~leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
+..-|.+|++--+|- ++++.++|.++..|+.||..|..+.-++..
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554443 556777777777777777777776655443
No 314
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=60.09 E-value=31 Score=31.50 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016182 301 QLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 301 ~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+|++++++|+.|.+.|++.+..
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 315
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=59.92 E-value=20 Score=31.88 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 268 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 268 RRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
.|++.+.+..-++++++++.|+.+...|..+++.+++
T Consensus 97 ~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 97 WRSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555566677778888888877777777766543
No 316
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=59.71 E-value=1.2e+02 Score=26.40 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 295 LKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 295 L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
|..++..+..+++.|..+|..|++++..++
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444444444444444444443
No 317
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=59.65 E-value=55 Score=31.02 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 271 RLRKQAEAEELSRKVDSLIDENASLKSEINQL 302 (394)
Q Consensus 271 R~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L 302 (394)
=.+|++++++-+.+.+.++.+..+|..+|...
T Consensus 141 ~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 141 LKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555444
No 318
>PF13879 KIAA1430: KIAA1430 homologue
Probab=59.54 E-value=55 Score=26.52 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHH
Q 016182 283 RKVDSLIDENASLKSEINQLS-----------------------ENSEKLRQENAALLEKLK 321 (394)
Q Consensus 283 ~rV~~L~~EN~~L~~ei~~L~-----------------------ee~~~L~~EN~~Lr~~L~ 321 (394)
.++.....||..|..+|.... .+..++..||..|..+|+
T Consensus 36 er~~~I~reN~~LL~ki~~I~~~~~~~~~~~~~~~~~~n~~~R~~e~~kI~~EN~~l~~RL~ 97 (98)
T PF13879_consen 36 ERQREIERENQILLRKIMEIMRKPGSIDCWNPYRPKSLNAINRKREQRKIDRENQKLLKRLQ 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566777778888888886543 456777888888877774
No 319
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.40 E-value=33 Score=37.25 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=11.7
Q ss_pred hhhhhhhccCCCCCCCcccc
Q 016182 344 TENLLSRVNNSGTVDRNMEE 363 (394)
Q Consensus 344 ~e~lls~~~~~~~~~~~~~~ 363 (394)
...|++++....+.+++.++
T Consensus 437 l~~L~e~~r~q~~~~~~~~~ 456 (508)
T KOG3091|consen 437 LDELYEILRMQNSQLKLQES 456 (508)
T ss_pred HHHHHHHHHhhcchhccccc
Confidence 56667776666655544443
No 320
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=59.39 E-value=89 Score=29.04 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 254 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 254 ~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
.+..+++++.|.-|+--=++|-.++.+|..++...+.....+..+|..|..
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas 133 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELAS 133 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777787777788888888888877666655555555555443
No 321
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=59.36 E-value=39 Score=37.50 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 016182 304 ENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 304 ee~~~L~~EN~~Lr~~L~~lq 324 (394)
..+..|..||..|+++|..+.
T Consensus 566 ~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 456788889999999997664
No 322
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.25 E-value=30 Score=28.16 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 288 LIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 288 L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
|+.+...|..+|..|..+...|..+...|+..|.
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444443
No 323
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=59.24 E-value=31 Score=29.52 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016182 281 LSRKVDSLIDENASLKSEINQLS 303 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ 303 (394)
++.+--.|...|..|..++..|.
T Consensus 22 v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 22 VEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444433333
No 324
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=59.17 E-value=1e+02 Score=31.07 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=25.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 261 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 308 (394)
Q Consensus 261 ~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~ 308 (394)
+.-|+-|.+=|..=|.+++||.++-.+..-...-|+.++..|-++|.+
T Consensus 43 Qas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 43 QASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 333444444444455555555555555444455566676666655543
No 325
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=59.11 E-value=43 Score=37.83 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcc-cccCCCCchhhhhhhhccC
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLN-EDKRVTPVSTENLLSRVNN 353 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E~~~~-~~~~~~p~~~e~lls~~~~ 353 (394)
++.-...++.|+.+|..|..++..-..+...+......|..++..++-.-.+++--+ ++-..-..+.++|+.-|+.
T Consensus 603 vEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK 679 (786)
T PF05483_consen 603 VENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEK 679 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 445555666777788888888877777777777777788888877764444444333 3333334456777765553
No 326
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=58.87 E-value=20 Score=31.87 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
+++|-|..++..|...|..|..|+..|+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666655543
No 327
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=58.87 E-value=20 Score=27.71 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
-.....++..|+.||..|+.+|+.++.
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355667788889999999999888754
No 328
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=58.74 E-value=60 Score=36.43 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
+..|..++..|+.+...|..++..+.+++..+..++..|..+|
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 285 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDL 285 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444444444444444444333333
No 329
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=58.66 E-value=21 Score=31.29 Aligned_cols=41 Identities=37% Similarity=0.464 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 272 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 312 (394)
Q Consensus 272 ~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~E 312 (394)
+-=|.-+++|.++|+..+.||-.|+.|++.|-+=.+.|.+-
T Consensus 66 LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 66 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 44577899999999999999999999999988777666554
No 330
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=58.51 E-value=50 Score=30.98 Aligned_cols=6 Identities=17% Similarity=0.672 Sum_probs=2.7
Q ss_pred hhhhhc
Q 016182 378 LHQLLD 383 (394)
Q Consensus 378 l~qll~ 383 (394)
|..+|+
T Consensus 149 ~~~~~~ 154 (162)
T PF04201_consen 149 FDEVLN 154 (162)
T ss_pred cchhhc
Confidence 444444
No 331
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.43 E-value=45 Score=27.01 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 284 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
.+..|+..+..+...+..|..+...+..+...|+.++.
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444455555555555555555555555543
No 332
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=58.18 E-value=31 Score=32.64 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016182 282 SRKVDSLIDENASLKSEINQL 302 (394)
Q Consensus 282 e~rV~~L~~EN~~L~~ei~~L 302 (394)
|.+++.|+++|..|+.++..|
T Consensus 46 erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 46 ERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 333
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=58.17 E-value=61 Score=27.06 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+.+++|...|..|.....+|...++.++.+......|+..-.++|..
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888877765
No 334
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=58.08 E-value=54 Score=33.27 Aligned_cols=47 Identities=30% Similarity=0.368 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 262 SNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 311 (394)
Q Consensus 262 sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~ 311 (394)
-|.|+-+.+ =+.+++.|..+|..|+..|..|+.+|...++.++.|+.
T Consensus 67 y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 67 YNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 355554433 35677888888888888888888888888777777653
No 335
>PHA03155 hypothetical protein; Provisional
Probab=57.92 E-value=14 Score=32.89 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 299 INQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 299 i~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
++.|..++.+|..||..||.+|..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677777788899999999864
No 336
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=57.90 E-value=1e+02 Score=27.64 Aligned_cols=49 Identities=10% Similarity=0.286 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.++++.|..++++..+-....+.++..+++....+..+-..+...+..|
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4566777777777666666677777766666666666666666555554
No 337
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=57.90 E-value=48 Score=30.37 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHhhc
Q 016182 275 QAEAEELSRKVDSLIDENASLKS---EINQLSENSEKLRQENA----ALLEKLKSAQL 325 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~---ei~~L~ee~~~L~~EN~----~Lr~~L~~lql 325 (394)
.++++.|..++.....+...|+. -+..|+.++..|..+|. .+..+|..+++
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~ 83 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK 83 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666665 55666666666666666 44455544443
No 338
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=57.82 E-value=1.3e+02 Score=26.20 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 254 LKRERRKQSNRESARRSRLRK--------QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 312 (394)
Q Consensus 254 ~KR~RRk~sNRESARRSR~RK--------q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~E 312 (394)
..+.+|.+-.+..+-..-... ...+..|..+++.++++|..|..+...|.++...|..+
T Consensus 20 ~~~~~~~l~~~l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 20 RVRRRRILTLVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344445555555554443332 23344555566666666666666666666666666555
No 339
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=57.40 E-value=1.3e+02 Score=30.37 Aligned_cols=70 Identities=27% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 016182 254 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN---------------------------- 305 (394)
Q Consensus 254 ~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee---------------------------- 305 (394)
.|+.--.++.++..+.-+.|-..--+.|+.-+..|+.+|..|..+...+..+
T Consensus 49 ~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~ 128 (309)
T PF09728_consen 49 QKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSE 128 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred -HHHHHHHHHHHHHHHHHh
Q 016182 306 -SEKLRQENAALLEKLKSA 323 (394)
Q Consensus 306 -~~~L~~EN~~Lr~~L~~l 323 (394)
+..+..||..|+++|..+
T Consensus 129 ~~~k~~~eN~~L~eKlK~l 147 (309)
T PF09728_consen 129 RNIKLREENEELREKLKSL 147 (309)
T ss_pred hhHHHHHHHHHHHHHHHHH
No 340
>PHA03162 hypothetical protein; Provisional
Probab=57.32 E-value=14 Score=33.58 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 299 INQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 299 i~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
++.|..++.+|..||..||.+|..
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777778889999999999964
No 341
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=57.27 E-value=57 Score=36.96 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
++.|+.+...|+.|...++.+=.+|-+.|..|+.||-.|..++..+.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555556666788999999999999998873
No 342
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.09 E-value=71 Score=26.63 Aligned_cols=35 Identities=37% Similarity=0.554 Sum_probs=23.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 266 SARRSRLRKQ----AEAEELSRKVDSLIDENASLKSEIN 300 (394)
Q Consensus 266 SARRSR~RKq----~~leeLe~rV~~L~~EN~~L~~ei~ 300 (394)
+-++-|.||. .+++.|..++..|..+|..|+.++.
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556653 4667777777777777777777653
No 343
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=56.97 E-value=94 Score=33.36 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=6.1
Q ss_pred hhhhhhcCCCcc
Q 016182 377 KLHQLLDASPRT 388 (394)
Q Consensus 377 kl~qll~~~~r~ 388 (394)
++|+.+++.|++
T Consensus 142 r~~s~~ga~~~~ 153 (459)
T KOG0288|consen 142 RRQSVDGAVPRT 153 (459)
T ss_pred hhhhhcCCCccc
Confidence 445555555543
No 344
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=56.83 E-value=1.1e+02 Score=28.41 Aligned_cols=79 Identities=28% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHH
Q 016182 264 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL-----------------------------RQENA 314 (394)
Q Consensus 264 RESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L-----------------------------~~EN~ 314 (394)
.|.||....+-+.++++|..+|...-.+...|..+-...+.++..+ +.+-.
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHh--hcccccchhcccccCCCCchhhhhhhhc
Q 016182 315 ALLEKLKSA--QLGNKQEIVLNEDKRVTPVSTENLLSRV 351 (394)
Q Consensus 315 ~Lr~~L~~l--ql~~~~E~~~~~~~~~~p~~~e~lls~~ 351 (394)
.|+.+-..| +|....+++- -.|+|++.|
T Consensus 102 qLr~rRD~LErrl~~l~~tie---------rAE~l~sqi 131 (159)
T PF05384_consen 102 QLRERRDELERRLRNLEETIE---------RAENLVSQI 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
No 345
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=56.75 E-value=22 Score=29.56 Aligned_cols=18 Identities=44% Similarity=0.652 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016182 286 DSLIDENASLKSEINQLS 303 (394)
Q Consensus 286 ~~L~~EN~~L~~ei~~L~ 303 (394)
..|..||..|+.+|..|.
T Consensus 3 ~ei~eEn~~Lk~eiqkle 20 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLE 20 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555543
No 346
>PRK14141 heat shock protein GrpE; Provisional
Probab=56.61 E-value=36 Score=32.94 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=22.4
Q ss_pred hhhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCCccc
Q 016182 343 STENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTD 389 (394)
Q Consensus 343 ~~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r~d 389 (394)
....|+..+.+.|=..- +-.++. -.+.||+-|..-+..|
T Consensus 123 i~k~l~~vLek~GV~~I--~~~Ge~------FDP~~HEAv~~~~~~~ 161 (209)
T PRK14141 123 TERAMLNALERHGVKKL--DPEGQK------FDPNFHQAMFEVPNPD 161 (209)
T ss_pred HHHHHHHHHHHCCCEEE--CCCCCC------CChHHhceeeeecCCC
Confidence 35678888887776521 111222 3577888876555433
No 347
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=56.45 E-value=1.4e+02 Score=27.91 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=37.2
Q ss_pred ccchHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 248 IQNERELKRERRKQSNRESARRSRLRK-----QAEAEELSRKVDSLIDENASLKSEINQLSENSEK 308 (394)
Q Consensus 248 ~~dErE~KR~RRk~sNRESARRSR~RK-----q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~ 308 (394)
-.-|.++.|.++-.+.|..++++|.-- ....++|+.-+.=.+.|...++..|..+.+++.-
T Consensus 37 ~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkp 102 (159)
T PF04949_consen 37 RAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKP 102 (159)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhH
Confidence 345666777778888888898888522 2233455555555556666666666655544433
No 348
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=56.33 E-value=9.8 Score=36.10 Aligned_cols=37 Identities=27% Similarity=0.637 Sum_probs=22.4
Q ss_pred CCCCCChh-------hhhhhcCCC---CCCCCCCCCCCCCCCCCCCcccCC
Q 016182 26 IHMYTDWA-------AMQAYYGPR---VAIPPYYNSPIASGHAPQPYMWGP 66 (394)
Q Consensus 26 ~~~yPDWs-------~mQAYygp~---v~~Pp~f~s~vas~~~phPYmWG~ 66 (394)
.|+|+ |. +||+=||=+ .++||||++.--+ |-||+++.
T Consensus 127 ~~~y~-~~~~~~~~~~m~~~~~y~~~~~P~~p~~apy~~~---p~p~ryr~ 173 (182)
T PF06495_consen 127 EYAYG-WPPPAPQFNPMQGAYPYQMPPRPMPPYFAPYPRP---PAPFRYRA 173 (182)
T ss_pred ccccC-CCCccccccccccccccccCCCCCCcccCccCCC---CCCccccC
Confidence 46777 43 666655323 3557899776432 44677776
No 349
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=56.21 E-value=81 Score=37.20 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENA 293 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~ 293 (394)
..|++|+.+++.++.+..
T Consensus 448 ~~ieele~el~~~~~~l~ 465 (1041)
T KOG0243|consen 448 EQIEELEEELENLEKQLK 465 (1041)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 350
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=55.92 E-value=81 Score=27.59 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSE 307 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~ 307 (394)
.+-.++++++.|...|+.|..+|..|+.++.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666555444
No 351
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=55.59 E-value=42 Score=39.42 Aligned_cols=50 Identities=26% Similarity=0.320 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHh
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSE----------NSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~e----------e~~~L~~EN~~Lr~~L~~l 323 (394)
+.++|++|+..+-.|+.||..|..+|..|.. .+..++.++..|+.-+..+
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL 587 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDAL 587 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998876 3345566677777776665
No 352
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=55.39 E-value=44 Score=27.02 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQE 312 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~E 312 (394)
.|..+++.|+..|..|...++..+.+++.|...
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~ 34 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMD 34 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777676666666665433
No 353
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=55.28 E-value=62 Score=30.48 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEK 308 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~ 308 (394)
|..++++....|..|..+|..|+.++..
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555444444
No 354
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=55.15 E-value=2.1e+02 Score=30.66 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSE 307 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~ 307 (394)
+.+++-|++.+.+.|+..|+.|+.+|+.|+.++.
T Consensus 288 ~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~ 321 (411)
T KOG1318|consen 288 TLQRARELENRQKKLESTNQELALRIEELKSEAG 321 (411)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777766554
No 355
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=55.08 E-value=32 Score=34.84 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
|+=-||.+.+...-|-..|+.++..|+.++..++.+.+..|+.|.-++
T Consensus 65 ~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 65 YIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555555555555555555555555555555555444444443
No 356
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=55.05 E-value=67 Score=30.67 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 290 DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 290 ~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+...++.++..++.++..++.+...|+.++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 136 (322)
T TIGR01730 102 ADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTE 136 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCE
Confidence 34444555555555555556666666666665543
No 357
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.92 E-value=1.3e+02 Score=33.04 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
.+.+|..+++.++.+...+..++..+.+++..+..+...|+.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444443333
No 358
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=54.92 E-value=1.2e+02 Score=36.09 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=10.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 016182 261 QSNRESARRSRLRKQAEAEELSR 283 (394)
Q Consensus 261 ~sNRESARRSR~RKq~~leeLe~ 283 (394)
..-|++..+--+++..+|.+|+.
T Consensus 702 ~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 702 SEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444555555554
No 359
>PRK14151 heat shock protein GrpE; Provisional
Probab=54.91 E-value=50 Score=31.01 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=20.3
Q ss_pred hhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCCccc
Q 016182 344 TENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTD 389 (394)
Q Consensus 344 ~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r~d 389 (394)
...|+..+...|=..-. -.++ .=.+.+|+-+..-+..|
T Consensus 108 ~k~l~~~L~k~Gv~~i~--~~G~------~FDP~~HEAv~~~~~~~ 145 (176)
T PRK14151 108 LKMFQDTLKRYQLEAVD--PHGE------PFNPEHHQAMAMQESAD 145 (176)
T ss_pred HHHHHHHHHHCCCEEeC--CCCC------CCCHHHhhcceeeCCCC
Confidence 45566666666543111 1111 23578899887665443
No 360
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=54.86 E-value=1.1e+02 Score=29.37 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+..|+.|-..|+.+|..-+.+...++.|+..|..+|.+
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~e 173 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEE 173 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888889988888888888888888888887765
No 361
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.64 E-value=1.3e+02 Score=32.66 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENS 306 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~ 306 (394)
+++.++.++..++.++..+..++..|+.++
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l 90 (475)
T PRK10361 61 ECELLNNEVRSLQSINTSLEADLREVTTRM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555554444444443
No 362
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.53 E-value=95 Score=39.03 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=49.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 260 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 260 k~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+.-.+.+++++.-=++++..++.+++.|++|+..|+..+..+.+....++.|..++.++|..+
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~ 1707 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNEL 1707 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4446678888888888888888888888888888888888888777777777777777777664
No 363
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=54.24 E-value=73 Score=28.56 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
-..++..|+.+|..|..|-..=...+..+-.+++.|+.++..|.+-|.-+
T Consensus 12 He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~L 61 (120)
T PF10482_consen 12 HEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVL 61 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 34456666666666666655555555555555666666666666665544
No 364
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.92 E-value=1.1e+02 Score=36.70 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 272 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 272 ~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+++..+.+|+..+..++.|......++..++.+...|......|++++.++
T Consensus 538 ~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 538 KEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444443
No 365
>PHA03011 hypothetical protein; Provisional
Probab=53.88 E-value=78 Score=27.97 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLS-------ENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~-------ee~~~L~~EN~~Lr~~L~~ 322 (394)
+.+++|..+...|..|-+-+..++..+. ++.+-|+.|-..||+++.+
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 3456666666666666665555555444 4455566666666666554
No 366
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=53.78 E-value=29 Score=34.87 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
|+.++++|+.+...|..++. .+..|...|+++|..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKI-------RLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 34444444444444444444 44455555555555543
No 367
>PRK04863 mukB cell division protein MukB; Provisional
Probab=53.76 E-value=1.3e+02 Score=36.94 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLK 296 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~ 296 (394)
...+++|+.++..|+.+-..++
T Consensus 313 ~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 313 ARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665555554433
No 368
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=53.68 E-value=54 Score=28.69 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQE 312 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~E 312 (394)
++.|......|...+..++++++.+...
T Consensus 103 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 103 KEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344433333333333
No 369
>PRK14147 heat shock protein GrpE; Provisional
Probab=53.66 E-value=52 Score=30.73 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=19.6
Q ss_pred hhhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCCcc
Q 016182 343 STENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRT 388 (394)
Q Consensus 343 ~~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r~ 388 (394)
....|+..+...|=.. .+..++. =.+.+|+-+..-+..
T Consensus 102 i~k~l~~~L~~~Gv~~--i~~~G~~------FDP~~HeAv~~~~~~ 139 (172)
T PRK14147 102 TYKQLLKVAADNGLTL--LDPVGQP------FNPEHHQAISQGEAE 139 (172)
T ss_pred HHHHHHHHHHHCCCEE--eCCCCCC------CChHHhceeeeecCC
Confidence 3566666766665431 1111111 246788877655433
No 370
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=53.57 E-value=42 Score=31.47 Aligned_cols=6 Identities=33% Similarity=0.468 Sum_probs=2.3
Q ss_pred HHHHHH
Q 016182 315 ALLEKL 320 (394)
Q Consensus 315 ~Lr~~L 320 (394)
.|++.|
T Consensus 73 elkqnl 78 (162)
T PF04201_consen 73 ELKQNL 78 (162)
T ss_pred HHHHHH
Confidence 334433
No 371
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=53.50 E-value=1e+02 Score=25.60 Aligned_cols=46 Identities=24% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKL----RQENAALLEKL 320 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L----~~EN~~Lr~~L 320 (394)
+.+.++++.++..--.|.+.++..|-.|.....++ +.|...||.+|
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 372
>PRK14163 heat shock protein GrpE; Provisional
Probab=53.39 E-value=48 Score=32.26 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=19.4
Q ss_pred hhhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCC
Q 016182 343 STENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASP 386 (394)
Q Consensus 343 ~~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~ 386 (394)
....|+..+...|=..- .-.++ .=.+.||+-|..-+
T Consensus 119 i~k~l~~~L~k~Gv~~I--~~~G~------~FDP~~HEAv~~~~ 154 (214)
T PRK14163 119 VAESLETTVAKLGLQQF--GKEGE------PFDPTIHEALMHSY 154 (214)
T ss_pred HHHHHHHHHHHCCCEEe--CCCCC------CCChhHhceeeeec
Confidence 46677777776665411 11111 23567888775533
No 373
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=53.35 E-value=71 Score=27.69 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 283 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 283 ~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
.++..+-.-|++|..--..|+++|+.|..-+..|...+.
T Consensus 57 ~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~ 95 (97)
T PF15136_consen 57 QQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIE 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677778888788888888888888888887765
No 374
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=53.21 E-value=2e+02 Score=29.43 Aligned_cols=42 Identities=24% Similarity=0.416 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 317 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr 317 (394)
+.+-+|..++..|..+-..|-.+|..|+.+-..+-.....|+
T Consensus 48 ~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~ 89 (294)
T COG1340 48 AKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELR 89 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333333333
No 375
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=53.10 E-value=1.5e+02 Score=26.07 Aligned_cols=64 Identities=30% Similarity=0.404 Sum_probs=35.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Q 016182 259 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE--NAALLEKLKSA 323 (394)
Q Consensus 259 Rk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~E--N~~Lr~~L~~l 323 (394)
-+..|+.-|.+. +-++.++++|..++..+-.+-..|..+...+..++..+... -..|+.+|...
T Consensus 39 l~~~n~~lAe~n-L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~ 104 (150)
T PF07200_consen 39 LLAENEELAEQN-LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAA 104 (150)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 345666666644 33356666677777766666666666666666666665211 23455555443
No 376
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.08 E-value=73 Score=27.75 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 290 DENASLKSEINQLSENSEKLRQENA 314 (394)
Q Consensus 290 ~EN~~L~~ei~~L~ee~~~L~~EN~ 314 (394)
.|+..|..++..+.++...+..+..
T Consensus 80 ~ei~~l~~~l~~l~~~~~~~~~~~~ 104 (108)
T PF06210_consen 80 QEIERLHRKLDALREKLGELLERDQ 104 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445555555555554444444433
No 377
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=52.93 E-value=1e+02 Score=31.06 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 250 NERELKRERRKQSNRESARRSRLRKQAEAE-ELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 250 dErE~KR~RRk~sNRESARRSR~RKq~~le-eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
.|++.|-.-|++--+.---++.+|-|.-.- +|+...++-..--.+|+.++.+|+++-++.
T Consensus 10 ~eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea 70 (277)
T PF15030_consen 10 SEEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEA 70 (277)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 455666655666666666666666655444 444444433333344444444444443333
No 378
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=52.89 E-value=33 Score=37.16 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 315 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~ 315 (394)
.+|..++..|.+.|..|...+...++++..|..|...
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 40 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQ 40 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666555544444444333
No 379
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=52.74 E-value=89 Score=26.52 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcccccCCCCchhhhhhhhccCCCC
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGT 356 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E~~~~~~~~~~p~~~e~lls~~~~~~~ 356 (394)
.+..+.++.+.|..||+.|..|...... ..+|...|++-.+-.... +.+.+..++-..|-
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~-----qvkn~~vrqknee~~~~~---------------sr~~V~d~L~q~gd 83 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAET-----QVKNAKVRQKNEENTRRL---------------SRDSVIDQLQQHGD 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHhhccC---------------CHHHHHHHHHHcCC
Q ss_pred CC
Q 016182 357 VD 358 (394)
Q Consensus 357 ~~ 358 (394)
.+
T Consensus 84 lR 85 (87)
T PF10883_consen 84 LR 85 (87)
T ss_pred CC
No 380
>PHA03161 hypothetical protein; Provisional
Probab=52.70 E-value=68 Score=29.82 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 264 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 264 RESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|.+-|+-+..|+ ..+|+..|..|..+.....+|+..|..-..+-......|..++.++
T Consensus 44 ~~~lr~~~~~~~--~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eL 101 (150)
T PHA03161 44 KKSLIKHENLKK--QKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILEL 101 (150)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 334444333333 3677777777777777777777777654333333444444444444
No 381
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=52.68 E-value=79 Score=32.06 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQL 302 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L 302 (394)
++++|+.+++.++.+...+..++..+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444433
No 382
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=52.57 E-value=24 Score=33.91 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 290 DENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 290 ~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+-..|+.++..|+.++..|..|+..|+.++..+
T Consensus 112 ~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~ 145 (198)
T KOG0483|consen 112 KDYESLKRQLESLRSENDRLQSEVQELVAELSSL 145 (198)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Confidence 3334444455555555555555566666655544
No 383
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=52.56 E-value=33 Score=29.53 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 295 LKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 295 L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
+..++.+|++++.+|+.||..|+..+.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555666666665554
No 384
>PRK10963 hypothetical protein; Provisional
Probab=52.53 E-value=40 Score=32.19 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 016182 290 DENASLKSEINQLSEN 305 (394)
Q Consensus 290 ~EN~~L~~ei~~L~ee 305 (394)
.+|..+-.++..|.-+
T Consensus 68 ~~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 68 IANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666655543
No 385
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=52.44 E-value=1.1e+02 Score=36.39 Aligned_cols=67 Identities=24% Similarity=0.131 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 257 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 257 ~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+-.+.||+--..--.++-..++++..+.-.|+.++..|..++..|.+++..+...+..|+..-+++
T Consensus 375 lkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L 441 (1195)
T KOG4643|consen 375 LKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKL 441 (1195)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777666667777777888777777888777777777777777777766666666655555
No 386
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=52.43 E-value=23 Score=35.66 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKL 309 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L 309 (394)
.+++.|+.+...++.|...+..++..+++++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888876655433
No 387
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.38 E-value=1.5e+02 Score=33.52 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
+++++|+.+.+.|+..-..|..+++.+.++.+.|...-..|...+
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444555555555544444444444444333
No 388
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=51.83 E-value=1.4e+02 Score=34.26 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 284 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+.+.|.++...++.++..++..-++|...+..||+++..+.
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34566666677777777777777777777888887776654
No 389
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.78 E-value=1.1e+02 Score=35.54 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 269 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 269 RSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+-..+=+..+-+|.-+++.|++.+.+|..+++.|.+++..+.++..+|+.++..+
T Consensus 657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~L 711 (970)
T KOG0946|consen 657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLL 711 (970)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555555555555555555555555555555555444
No 390
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=51.73 E-value=1.4e+02 Score=26.39 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+.++.++.....++.++.....|..-=....+++.....||..|+..|..-
T Consensus 11 ~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG 61 (125)
T PF03245_consen 11 QAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAG 61 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcC
Confidence 333444444444444444444444433455667777888999999998764
No 391
>PF14645 Chibby: Chibby family
Probab=51.63 E-value=29 Score=30.52 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 291 ENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 291 EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
++..|+.++..|++++.-|..++..|..-|.
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDMLt 102 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDMLT 102 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 392
>PRK14153 heat shock protein GrpE; Provisional
Probab=51.52 E-value=47 Score=31.76 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=18.6
Q ss_pred hhhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCCc
Q 016182 343 STENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPR 387 (394)
Q Consensus 343 ~~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r 387 (394)
....|+..+...|=..-. -.++. =.+.||+-+..-+.
T Consensus 119 i~k~~~~vL~k~Gv~~I~--~~G~~------FDP~~HEAv~~~~~ 155 (194)
T PRK14153 119 VSKQFFSILEKYGLERIE--CEGEE------FDPHRHEAMMHVET 155 (194)
T ss_pred HHHHHHHHHHHCCCeeeC--CCCCC------CChhHhceeeeeCC
Confidence 355666666665544111 11222 24677887765443
No 393
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=51.45 E-value=40 Score=33.94 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=33.7
Q ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 258 RRKQSNRESARR-SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 258 RRk~sNRESARR-SR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
-.-++|||..=. +|.||+.-.+ ++..|+...- -..+|..|++++..++.|+-...++|.++.
T Consensus 130 LK~IR~~E~sl~p~R~~r~~l~d----~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 130 LKSIRNREESLQPSRDRRRKLQD----EIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhHHHHH----HHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 356678876544 4444443222 2333333222 133566677777777777777776676653
No 394
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.35 E-value=1.1e+02 Score=36.21 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 264 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 264 RESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
=.+-.+.+...|.++++|+......-.+...|...|..++-+++.+.+++..|+.++.+++
T Consensus 406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~ 466 (1200)
T KOG0964|consen 406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQ 466 (1200)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777778888877777777777777777777777778778888877777764
No 395
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=51.18 E-value=69 Score=26.93 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 287 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 287 ~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.|+.....|..++..+..+...|..+-..|+.+|.++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555666666666554
No 396
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=51.13 E-value=68 Score=34.73 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
.++.+...+..|+.....++.++..++-+++.|..+-++|+.++.
T Consensus 447 ~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE 491 (507)
T PF05600_consen 447 QEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIE 491 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555443
No 397
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.12 E-value=1.3e+02 Score=35.42 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 294 SLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 294 ~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
.|..++..++++++.|+.+...||+++.+
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666666654
No 398
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=51.00 E-value=1.2e+02 Score=31.11 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=34.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 254 LKRERRKQSNRESARRSRLRKQAEAEELSR-------KVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 254 ~KR~RRk~sNRESARRSR~RKq~~leeLe~-------rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
+.+..-++.+-+--++-|.-||-+||.||. +|+.-+.+...|..++..|.+.|+.|+.-+..|-..
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence 344444444555555556666666666654 333444444556666666666666555444444333
No 399
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.97 E-value=78 Score=35.28 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSE---NSEKLRQENAALLEKLK 321 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~e---e~~~L~~EN~~Lr~~L~ 321 (394)
.|-.....|+.||-.|.+.|..|+. +++.|..|++.|.+.+.
T Consensus 167 RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~e 211 (772)
T KOG0999|consen 167 RLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 3445667888888888888887774 56666666666655443
No 400
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=50.86 E-value=94 Score=26.36 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016182 287 SLIDENASLKSEINQLSENS 306 (394)
Q Consensus 287 ~L~~EN~~L~~ei~~L~ee~ 306 (394)
.+-.||..|+.++.+|+.-+
T Consensus 48 r~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 48 RFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666555433
No 401
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=50.77 E-value=91 Score=33.05 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
+..|+.|-.+|..+|+.-.++..+.+.+...|..+|.
T Consensus 141 t~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLe 177 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLE 177 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777666666665555555555544
No 402
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=50.76 E-value=2.4e+02 Score=28.57 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 285 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 285 V~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
++..+.|-..+..++.+..+++..+.....+.+.+|..+
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333434444444444444444444445555555544
No 403
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.32 E-value=79 Score=34.68 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQL 302 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L 302 (394)
++++|+.++..+..+-..|..++..+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l 235 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHL 235 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333333333
No 404
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.05 E-value=86 Score=27.43 Aligned_cols=29 Identities=34% Similarity=0.368 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 295 LKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 295 L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|..++..+..+...|+..-..|+.++.++
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~ 104 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKEL 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 405
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=49.94 E-value=1.4e+02 Score=28.45 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016182 306 SEKLRQENAALLEKLKS 322 (394)
Q Consensus 306 ~~~L~~EN~~Lr~~L~~ 322 (394)
..+++.+..+|+.+|..
T Consensus 155 ~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 155 REELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444555555544
No 406
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.88 E-value=76 Score=31.66 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLS----ENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~----ee~~~L~~EN~~Lr~~L~~l 323 (394)
+..+++++.+|..|...|...+..++ .....++.+...|+.-+.+.
T Consensus 59 ~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v 108 (247)
T COG3879 59 LRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSV 108 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccC
Confidence 33444444444444444444444444 23333444455555555544
No 407
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=49.80 E-value=2e+02 Score=30.97 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 317 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr 317 (394)
++++..|..+...|+.+...|..+...|..+.+.|..+-++|.
T Consensus 136 qQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 136 QQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444433333333
No 408
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=49.68 E-value=98 Score=26.26 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
.+++|..+|..|......|...+..++........|-..=.++|.+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5666666677666666666666666666555555554444444443
No 409
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.47 E-value=72 Score=31.80 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLR----QENAALLEKLKSAQ 324 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~----~EN~~Lr~~L~~lq 324 (394)
+|..++..++++-.+|..|+..+........ .-+++|..+|..+.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~ 102 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLR 102 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 6777888888888888888888888888887 55666666666554
No 410
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.28 E-value=1.1e+02 Score=32.09 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 264 RESARRSRLRKQAEAEELSRKVDSLIDENASLKS-------------EINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 264 RESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~-------------ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+...++...+-++++++|..+++.|+.....|.. .+..+.+.+..|..+...|++++..++
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 411
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=49.25 E-value=2.3e+02 Score=28.57 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 016182 248 IQNERELKRERRKQSNR---------------ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL--- 309 (394)
Q Consensus 248 ~~dErE~KR~RRk~sNR---------------ESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L--- 309 (394)
+.-|.+.|-.|.+.-.| ..++.--..-++.|+.|+.....|......-+.++++.+.++..|
T Consensus 140 L~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v 219 (267)
T PF10234_consen 140 LGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSV 219 (267)
T ss_pred HhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred ----HHHHHHHHHHHHHh
Q 016182 310 ----RQENAALLEKLKSA 323 (394)
Q Consensus 310 ----~~EN~~Lr~~L~~l 323 (394)
..|-..|.++|+.+
T Consensus 220 RPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 220 RPAFMDEYEKLEEELQKL 237 (267)
T ss_pred ChHHHHHHHHHHHHHHHH
No 412
>PF14282 FlxA: FlxA-like protein
Probab=49.15 E-value=80 Score=27.04 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 278 AEELSRKVDSLIDENASLKS----EINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~----ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
++.|+.++..|+.+...|.. -.....++...|..+...|..+|..++
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555 113334445555555555555555544
No 413
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=49.10 E-value=70 Score=26.53 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQ---LSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~---L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+-+.++..+|..|+.....|+..+.. |..+++.+......|..++.+++
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777665554 66666666666667777776665
No 414
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=49.02 E-value=1.2e+02 Score=27.11 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 325 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql 325 (394)
.+|..-..=+-|-++|+.+|..|.-+...++.=|..|.-+|++|+.
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~ 60 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEY 60 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555666666666666666666666666666666643
No 415
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=48.91 E-value=80 Score=36.11 Aligned_cols=37 Identities=35% Similarity=0.463 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 270 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 306 (394)
Q Consensus 270 SR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~ 306 (394)
++-+-.+++..|..+++.++.||..|+.++..|.+++
T Consensus 128 ~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 128 EKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778999999999999999999998877654
No 416
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=48.87 E-value=1.3e+02 Score=29.65 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=8.5
Q ss_pred hhhhhhhccCC
Q 016182 344 TENLLSRVNNS 354 (394)
Q Consensus 344 ~e~lls~~~~~ 354 (394)
+.-||++.|+.
T Consensus 196 CGA~Ls~~D~d 206 (254)
T PF03194_consen 196 CGAFLSVGDND 206 (254)
T ss_pred hhhHHhccchH
Confidence 66888888874
No 417
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=48.81 E-value=55 Score=34.21 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 280 ELSRKVDSLIDENASLKSEINQLSE 304 (394)
Q Consensus 280 eLe~rV~~L~~EN~~L~~ei~~L~e 304 (394)
.|+++-..|++||+.|+.++++|+.
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555533
No 418
>PRK14144 heat shock protein GrpE; Provisional
Probab=48.78 E-value=74 Score=30.64 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=19.9
Q ss_pred hhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCCcc
Q 016182 344 TENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRT 388 (394)
Q Consensus 344 ~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r~ 388 (394)
...|+..+...|=.-- ...++ .=.+.+|+-+..-+..
T Consensus 131 ~k~l~~~L~k~GV~~I--~~~G~------~FDP~~HEAv~~~~~~ 167 (199)
T PRK14144 131 MKLFLDALQKFDVEQI--DPLGQ------TFDPQQHEAMSMQPAP 167 (199)
T ss_pred HHHHHHHHHHCCCEEe--CCCCC------CCChhHhceeeeeCCC
Confidence 5667777766654411 11111 2357788888765443
No 419
>PRK14127 cell division protein GpsB; Provisional
Probab=48.73 E-value=77 Score=27.83 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
..++++.-.+| -.+...|..++..|++++..|+.+...++.++.
T Consensus 25 ~~EVD~FLd~V---~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 25 QDEVDKFLDDV---IKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444443333 345556666666666655555555555555554
No 420
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=48.66 E-value=2e+02 Score=29.83 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016182 269 RSRLRKQAEAEELSRKV 285 (394)
Q Consensus 269 RSR~RKq~~leeLe~rV 285 (394)
|.-.|++.+.++|+..-
T Consensus 355 raeekeq~eaee~~ra~ 371 (445)
T KOG2891|consen 355 RAEEKEQKEAEELERAR 371 (445)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33345566666665543
No 421
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.63 E-value=68 Score=31.64 Aligned_cols=53 Identities=25% Similarity=0.245 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 269 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 269 RSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+.|.-+|..++.+..-+..++.+...|..+|..+..+.+.. |+.||.++...+
T Consensus 156 k~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 156 KRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33445666666666666656665566666666666655555 455666665554
No 422
>PRK01156 chromosome segregation protein; Provisional
Probab=48.59 E-value=1.6e+02 Score=33.41 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=3.3
Q ss_pred hhhhhhcc
Q 016182 345 ENLLSRVN 352 (394)
Q Consensus 345 e~lls~~~ 352 (394)
..++..++
T Consensus 767 ~e~~~~~~ 774 (895)
T PRK01156 767 RKYLFEFN 774 (895)
T ss_pred HHHHHHhC
Confidence 33444443
No 423
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=48.57 E-value=1.7e+02 Score=28.55 Aligned_cols=37 Identities=35% Similarity=0.445 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 288 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 288 L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
|..+...+..+|..|.+.......|...|+.+|...+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555556666666677777777776664
No 424
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.40 E-value=1.3e+02 Score=36.01 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 318 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~ 318 (394)
....|+.+++.|..++..|..++..+.+++..|..+...+..
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~ 923 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQ 923 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 334444444455444444444444444444444333333333
No 425
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=48.35 E-value=2.5e+02 Score=30.30 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 284 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 284 rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+..|..+-+.|+.++..|.++..+|..+...|...-+.||
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555666666666555555555544
No 426
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=48.27 E-value=1.2e+02 Score=32.76 Aligned_cols=38 Identities=34% Similarity=0.477 Sum_probs=17.8
Q ss_pred cchHHHHHHH----HHHHhHHHHHHH--HHHHHHHHHHHHHHHH
Q 016182 249 QNERELKRER----RKQSNRESARRS--RLRKQAEAEELSRKVD 286 (394)
Q Consensus 249 ~dErE~KR~R----Rk~sNRESARRS--R~RKq~~leeLe~rV~ 286 (394)
+-+||+.|.| |.+..--+|--| -.-|.+|-+||+++++
T Consensus 360 qHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELe 403 (593)
T KOG4807|consen 360 QHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELE 403 (593)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566665544 333333333322 2345566666665544
No 427
>PRK06835 DNA replication protein DnaC; Validated
Probab=48.20 E-value=1.6e+02 Score=30.02 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016182 304 ENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 304 ee~~~L~~EN~~Lr~~L~~ 322 (394)
..+..|..++..|+++...
T Consensus 65 ~~~~~l~~~~~~l~~~~~~ 83 (329)
T PRK06835 65 ETLKELKEKITDLRVKKAE 83 (329)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 428
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=48.18 E-value=1.7e+02 Score=32.97 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
.+|..+++++.....+|+..|.+-+.++..|+.+..+-..+++++.
T Consensus 103 qel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666555555553
No 429
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.16 E-value=74 Score=30.95 Aligned_cols=11 Identities=0% Similarity=0.084 Sum_probs=5.1
Q ss_pred hhhhhhhhccC
Q 016182 343 STENLLSRVNN 353 (394)
Q Consensus 343 ~~e~lls~~~~ 353 (394)
....|+.++.=
T Consensus 129 v~k~fy~elPi 139 (211)
T COG3167 129 VDKEFYAELPI 139 (211)
T ss_pred hhhhhHhhcce
Confidence 34445555443
No 430
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.15 E-value=1.7e+02 Score=34.66 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSE 307 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~ 307 (394)
..+...+++.|+.+.+.|+.+|..+++.+.
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555544
No 431
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=48.09 E-value=17 Score=39.27 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSE 298 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~e 298 (394)
+||+|++|+++|+++...|.++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 3444444444444444433333
No 432
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=48.07 E-value=95 Score=26.09 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 316 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~L 316 (394)
..|+.+++.|+.+...|..++..+..++..|..+...|
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555444433
No 433
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=48.04 E-value=1.9e+02 Score=32.61 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHh
Q 016182 311 QENAALLEKLKSA 323 (394)
Q Consensus 311 ~EN~~Lr~~L~~l 323 (394)
.+++.|..+|.++
T Consensus 300 ~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 300 EERRKLHNEILEL 312 (670)
T ss_pred HHHHHHHHHHHHh
Confidence 5556666666554
No 434
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=47.75 E-value=1.5e+02 Score=28.39 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 265 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 316 (394)
Q Consensus 265 ESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~L 316 (394)
.+.-|+|-.|.+ ++-..+++.|++++..|+.++...+++++.|..=-++|
T Consensus 114 L~eEr~Ry~rLQ--qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQL 163 (179)
T PF13942_consen 114 LSEERARYQRLQ--QSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQL 163 (179)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 455566666655 56667788888888888888888888777775444444
No 435
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.64 E-value=2.8e+02 Score=28.48 Aligned_cols=7 Identities=71% Similarity=0.909 Sum_probs=3.4
Q ss_pred chHHHHH
Q 016182 250 NERELKR 256 (394)
Q Consensus 250 dErE~KR 256 (394)
+|.+.|+
T Consensus 9 ~E~e~K~ 15 (294)
T COG1340 9 DELELKR 15 (294)
T ss_pred hHHHHHH
Confidence 4444444
No 436
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.55 E-value=1.6e+02 Score=32.14 Aligned_cols=67 Identities=27% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH-------------------------------------------HHHHHHHHHHHHHHH
Q 016182 253 ELKRERRKQSNRESARRSRLRK-------------------------------------------QAEAEELSRKVDSLI 289 (394)
Q Consensus 253 E~KR~RRk~sNRESARRSR~RK-------------------------------------------q~~leeLe~rV~~L~ 289 (394)
++.|+-+|+.|+++++.-|-=- +.++-+||.++..
T Consensus 410 ~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~-- 487 (521)
T KOG1937|consen 410 EETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYV-- 487 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhH--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 290 DENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 290 ~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
.+.......++.|++.+..++.||..|..++.
T Consensus 488 E~~k~~l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 488 EEQKQYLKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
No 437
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=47.42 E-value=64 Score=26.52 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQL 302 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L 302 (394)
++.|+.+...|+.||..|+-|+..|
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555554
No 438
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=47.33 E-value=57 Score=34.82 Aligned_cols=13 Identities=8% Similarity=0.102 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHH
Q 016182 263 NRESARRSRLRKQ 275 (394)
Q Consensus 263 NRESARRSR~RKq 275 (394)
-+..++++|+|+.
T Consensus 300 ~~~~~~~~~~~~~ 312 (429)
T PRK00247 300 EKKAFLWTLRRNR 312 (429)
T ss_pred HHHHHHHHHHhcc
Confidence 3445556665554
No 439
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=47.23 E-value=51 Score=33.37 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
+++++.++..|+.+...|..++.....+...|+.+......+|.
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333333333333333333444433334444444443333443
No 440
>PRK14145 heat shock protein GrpE; Provisional
Probab=47.02 E-value=92 Score=29.91 Aligned_cols=14 Identities=7% Similarity=-0.035 Sum_probs=8.7
Q ss_pred hhhhhhhhcCCCcc
Q 016182 375 GAKLHQLLDASPRT 388 (394)
Q Consensus 375 ~~kl~qll~~~~r~ 388 (394)
.+.+|+-+..-+..
T Consensus 152 DP~~HEAv~~~~~~ 165 (196)
T PRK14145 152 DPYKHHAVMQEEVE 165 (196)
T ss_pred CchhhheeeeeCCC
Confidence 46778877655433
No 441
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=46.98 E-value=1.1e+02 Score=34.86 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
++++-..+...++.||..++.++..|+.++..|+.|.+.||.++
T Consensus 719 ~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 719 SLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555554443
No 442
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=46.95 E-value=2.3e+02 Score=25.85 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 254 LKRERRKQSNRESARRSRLRKQAEAEELSRKV-------DSLIDENASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 254 ~KR~RRk~sNRESARRSR~RKq~~leeLe~rV-------~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
.....+..+....++..-..+...+..|.... ..|..+.......+..-++++..|..||..||..
T Consensus 25 ~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 25 RADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
No 443
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=46.93 E-value=70 Score=35.92 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 298 EINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 298 ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+++.|+.++++|+.|.+.|.-++..
T Consensus 34 el~~Lk~~vqkLEDEKKFL~nE~r~ 58 (654)
T PF09798_consen 34 ELNKLKSEVQKLEDEKKFLNNELRS 58 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 444
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=46.91 E-value=99 Score=29.20 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 269 RSRLRKQAEAEELSRKVDSLIDENASL 295 (394)
Q Consensus 269 RSR~RKq~~leeLe~rV~~L~~EN~~L 295 (394)
.-|.++..+++.++..+..++..-..|
T Consensus 108 ~~R~~~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 108 AQRQKLWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544444444
No 445
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=46.85 E-value=71 Score=36.50 Aligned_cols=52 Identities=23% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
||..++..|..++..+..++..++..|..|+..+.....++..|...+..++
T Consensus 298 rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr 349 (775)
T PF10174_consen 298 RKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALR 349 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
No 446
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=46.77 E-value=1.6e+02 Score=29.51 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 271 RLRKQAEAEELSRKVDSLIDENASLKSEINQLS 303 (394)
Q Consensus 271 R~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ 303 (394)
..+-..++..|+.+|..|.++......+|..|.
T Consensus 76 eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 76 EEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777777777777777665
No 447
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=46.71 E-value=63 Score=33.11 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 281 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 281 Le~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
...++..|++||..|..++..-++..+.|+.|....+.+|..+
T Consensus 61 y~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaA 103 (305)
T PF14915_consen 61 YNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAA 103 (305)
T ss_pred HhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777787777777777788888888888777654
No 448
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.71 E-value=79 Score=32.05 Aligned_cols=33 Identities=36% Similarity=0.437 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 273 RKQAEAEELSRKVDSLIDENASLKSEINQLSEN 305 (394)
Q Consensus 273 RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee 305 (394)
.++..+.+|+.++..|+.+......+...|..+
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 449
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=46.54 E-value=1.2e+02 Score=26.12 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 299 INQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 299 i~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|..-+.+...+...|..|+.+|.+.
T Consensus 39 Va~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 39 VADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677777888888887765
No 450
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.33 E-value=1.8e+02 Score=36.81 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSEN 305 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee 305 (394)
+..++++...++.|..+|..|..++..|...
T Consensus 1476 ~~~lee~~e~~e~l~renk~l~~ei~dl~~~ 1506 (1930)
T KOG0161|consen 1476 KNALEELLEQLEELRRENKNLSQEIEDLEEQ 1506 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666655543
No 451
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=46.25 E-value=68 Score=32.08 Aligned_cols=39 Identities=41% Similarity=0.544 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHh-hcccccchhc
Q 016182 295 LKSEINQLSENS---EKLRQENAALLEKLKSA-QLGNKQEIVL 333 (394)
Q Consensus 295 L~~ei~~L~ee~---~~L~~EN~~Lr~~L~~l-ql~~~~E~~~ 333 (394)
|..+|..|.+.. ..|..+-..|..-|..- ..|.-+|++|
T Consensus 36 L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~L 78 (304)
T PF02646_consen 36 LKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQL 78 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 444444444433 44444444444444432 2445555543
No 452
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=46.21 E-value=81 Score=28.35 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 277 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 277 ~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
.++.|+.++...+.....-...|..|+..+..+..+++.+..++
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45567777777777777777777777777777777777766664
No 453
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=46.18 E-value=2.8e+02 Score=26.64 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
.+.++.++..|+........+...+...+..|..++..|...|.
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444
No 454
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.15 E-value=1.7e+02 Score=32.78 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=8.6
Q ss_pred hhhhhhhccCCCCCCCccccc
Q 016182 344 TENLLSRVNNSGTVDRNMEEG 364 (394)
Q Consensus 344 ~e~lls~~~~~~~~~~~~~~~ 364 (394)
.+++.+.-+-.=++|+...++
T Consensus 258 ~e~~~~~n~l~~sldgk~~eD 278 (772)
T KOG0999|consen 258 AEDISSLNHLLFSLDGKFGED 278 (772)
T ss_pred hhhhhhhhhhheecccccccc
Confidence 444333333344555433333
No 455
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=46.06 E-value=1.3e+02 Score=34.11 Aligned_cols=62 Identities=23% Similarity=0.242 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016182 265 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 326 (394)
Q Consensus 265 ESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~ 326 (394)
.=+.++...=|.+++..+.++.+++.....+..+|..++.....|+.|+..|+-+|..++-.
T Consensus 562 ~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 562 QEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455556667788888888888888888888888888888899999999999988876533
No 456
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=46.02 E-value=1.6e+02 Score=35.47 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 318 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~ 318 (394)
....+.+.++..++.+...|..++..++++++.+...|..++.
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~ 536 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAAD 536 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666655555555533
No 457
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=45.90 E-value=2.4e+02 Score=27.06 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
+++...++..++.+......++..+..++..|+.+...+...|+.
T Consensus 115 ~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 115 YEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 458
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=45.87 E-value=77 Score=26.79 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 315 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~ 315 (394)
..|+.|..-+..|++.|..|..++..|-+.+.+.+.|-++
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888888888877777655443
No 459
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=45.86 E-value=56 Score=27.08 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 279 EELSRKVDSLIDENASLKSEINQL 302 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L 302 (394)
.+|+.+++.|+.+...+..++..+
T Consensus 73 ~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 73 KELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 460
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=45.85 E-value=2.3e+02 Score=25.51 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=47.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 016182 256 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS---------ENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 256 R~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~---------ee~~~L~~EN~~Lr~~L~~ 322 (394)
.+--++-|.|.||--+.|.++ +.++.+++.|..-...+...+..|. .++..|..+...++.+|..
T Consensus 34 ae~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k 107 (126)
T PF09403_consen 34 AEYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDK 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566678888887777766 5788888888777777777776665 5677888787777777754
No 461
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=45.79 E-value=94 Score=31.47 Aligned_cols=57 Identities=23% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcccccch
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEIN-------QLSENSEKLRQENAALLEKLKSAQLGNKQEI 331 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~-------~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E~ 331 (394)
..+|.++|.+|..|+--|..|..++. .+.+.-.+++.|...+.++|..+..++.+-|
T Consensus 216 ldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l 279 (311)
T PF04642_consen 216 LDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEML 279 (311)
T ss_pred HHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 35678899999999999999999984 3445556677788888888877765554444
No 462
>PRK14146 heat shock protein GrpE; Provisional
Probab=45.71 E-value=81 Score=30.57 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=20.6
Q ss_pred hhhhhhhhccCCCCCCCccccccccccccCCchhhhhhhhcCCCccc
Q 016182 343 STENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTD 389 (394)
Q Consensus 343 ~~e~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r~d 389 (394)
....|++.+...|=..- .--++ .=.+.||+-+..-+..|
T Consensus 140 i~k~l~~~L~k~Gv~~i--~~~G~------~FDP~~HeAv~~~~~~~ 178 (215)
T PRK14146 140 ILKEFYSVLEKSNVIRF--DPKGE------PFDPMSMEALSSEEGDQ 178 (215)
T ss_pred HHHHHHHHHHHCcCeee--CCCCC------CCChhHhceeeeecCCC
Confidence 35667777766654411 11111 12477888887655443
No 463
>PLN02678 seryl-tRNA synthetase
Probab=45.70 E-value=1.2e+02 Score=32.51 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 269 RSRLRKQAEAEELSRKVDSLIDENA----------SLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 269 RSR~RKq~~leeLe~rV~~L~~EN~----------~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+-|+.=+.++++|..+.+.+..+.. .|..++..|+++...|+.+...|.++|..+
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=45.65 E-value=2.5e+02 Score=26.04 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=33.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 016182 255 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSE-INQLS 303 (394)
Q Consensus 255 KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~e-i~~L~ 303 (394)
+|+.+...+-+.|.+.+..=.+...+.+.++..-+.+-+.++.+ ...+.
T Consensus 41 ~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~ 90 (155)
T PRK06569 41 NRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLE 90 (155)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888888877776666666777777666666666655 44443
No 465
>PRK14160 heat shock protein GrpE; Provisional
Probab=45.65 E-value=51 Score=31.96 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=6.9
Q ss_pred hhhhhhhhcCCC
Q 016182 375 GAKLHQLLDASP 386 (394)
Q Consensus 375 ~~kl~qll~~~~ 386 (394)
.|.||+-+..-+
T Consensus 167 DP~~HEAv~~~~ 178 (211)
T PRK14160 167 DPNLHNAVMHVE 178 (211)
T ss_pred ChHHhceeeeeC
Confidence 466777665443
No 466
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.51 E-value=1.3e+02 Score=35.69 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016182 247 WIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 326 (394)
Q Consensus 247 ~~~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~ 326 (394)
|..+|.+++.+ .+.+..--.+.+++.++++.++..+..+...++.++..++.++.....+...|+.+...++..
T Consensus 598 ~~~~ee~L~~~------l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 671 (1201)
T PF12128_consen 598 YAASEEELRER------LEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQE 671 (1201)
T ss_pred hhcChHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred cccch
Q 016182 327 NKQEI 331 (394)
Q Consensus 327 ~~~E~ 331 (394)
..+++
T Consensus 672 ~~~~~ 676 (1201)
T PF12128_consen 672 IEEAK 676 (1201)
T ss_pred HHHHH
No 467
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.45 E-value=96 Score=32.54 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 252 RELKRERRKQSNRESARRSRLRKQAE--AEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 312 (394)
Q Consensus 252 rE~KR~RRk~sNRESARRSR~RKq~~--leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~E 312 (394)
..+-..-|.++|..|..--.++++.. .++|..++..|..+...|..++..+.+++..+...
T Consensus 43 ~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 43 LSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 468
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=45.44 E-value=7 Score=43.24 Aligned_cols=104 Identities=27% Similarity=0.345 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 016182 251 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQE 330 (394)
Q Consensus 251 ErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E 330 (394)
|.++++.+....-=+.-++--..-+..+.+...+++.|..++..|..++..|..+...|..|-..|++.+..++.+....
T Consensus 352 Eeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~ 431 (713)
T PF05622_consen 352 EEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQ 431 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q ss_pred hhcccccCCCCchhhhhhhhccCC
Q 016182 331 IVLNEDKRVTPVSTENLLSRVNNS 354 (394)
Q Consensus 331 ~~~~~~~~~~p~~~e~lls~~~~~ 354 (394)
..+..+......+.++|..-+...
T Consensus 432 ~~l~~~~~~~~~~~~~l~~El~~~ 455 (713)
T PF05622_consen 432 EQLSQSGEESSSSGDNLSAELNPA 455 (713)
T ss_dssp ------------------------
T ss_pred cccccccccccccccchhhhccch
No 469
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.36 E-value=1.9e+02 Score=32.22 Aligned_cols=74 Identities=24% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 016182 251 ERELKRERRKQSNRESARRSRLRK----QAEAEELSRKVDSLIDENASLKSEINQLS---ENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 251 ErE~KR~RRk~sNRESARRSR~RK----q~~leeLe~rV~~L~~EN~~L~~ei~~L~---ee~~~L~~EN~~Lr~~L~~l 323 (394)
..+..+-+--.++-++-.+.+.++ +.++++-|.+++.|+.+|..|+..|..-. +++++...|+..|...|.++
T Consensus 272 ~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 272 QDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKI 351 (581)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 016182 324 Q 324 (394)
Q Consensus 324 q 324 (394)
+
T Consensus 352 ~ 352 (581)
T KOG0995|consen 352 Q 352 (581)
T ss_pred H
No 470
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=45.35 E-value=35 Score=36.47 Aligned_cols=73 Identities=23% Similarity=0.249 Sum_probs=0.0
Q ss_pred CccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 245 ETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 245 e~~~~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
++--++|+-+|-.|.|++ |.+++.....+.+|-.+.++|.++.-++++++.|..+.-.-+++.|
T Consensus 70 ~~~~lnEkvLkdkrKK~r----------------Etfer~~rlye~~~p~~~~~L~r~eveye~kr~~~sqYy~~vkna~ 133 (487)
T KOG4672|consen 70 DVLRLNEKVLKDKRKKRR----------------ETFERGKRLYEATEPVMFSHLQRREVEYEDKRPEDSQYYHPVKNAQ 133 (487)
T ss_pred chhhhHHHHHHHHHHHHH----------------HHHHHHHHhhcccChHHHHHHHHHhhhhhhhchhhhhhhhhccccc
Q ss_pred cccccchhc
Q 016182 325 LGNKQEIVL 333 (394)
Q Consensus 325 l~~~~E~~~ 333 (394)
-...++|.+
T Consensus 134 ~v~~~dipl 142 (487)
T KOG4672|consen 134 GVPPPDIPL 142 (487)
T ss_pred cCCCccCcC
No 471
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=45.30 E-value=72 Score=35.20 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
++.-+.+||.+|+.+=.+.+.|+.+...+..++..++.|...++.+
T Consensus 361 ~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 361 SNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 472
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.26 E-value=1.4e+02 Score=35.82 Aligned_cols=84 Identities=23% Similarity=0.263 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016182 249 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNK 328 (394)
Q Consensus 249 ~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~ 328 (394)
++-+-..+.+|..++..-+...+.+-.....+++...+....+.+.+..+|..|.+....++.+....+..|..-..+..
T Consensus 399 ~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~ 478 (1293)
T KOG0996|consen 399 EDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIR 478 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q ss_pred cchh
Q 016182 329 QEIV 332 (394)
Q Consensus 329 ~E~~ 332 (394)
+|+.
T Consensus 479 ~e~~ 482 (1293)
T KOG0996|consen 479 EEIE 482 (1293)
T ss_pred HHHH
No 473
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=45.18 E-value=79 Score=26.62 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 316 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~L 316 (394)
++.|+.+++.|+.+...|..++..+++++..|..+.+.+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 474
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=44.96 E-value=99 Score=32.08 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSE----------INQLSENSEKLRQENAALLEKLKS 322 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~e----------i~~L~ee~~~L~~EN~~Lr~~L~~ 322 (394)
.++++.|+.+++.|+.+...|..+ +..+.++...++.+..++++-+..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
No 475
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=44.91 E-value=99 Score=29.76 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 271 RLRKQAEAEELSRKVDSLI-------DENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 271 R~RKq~~leeLe~rV~~L~-------~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|.+|+-.++.+..+++.|. .....+..++...++.++.| |..|+++|-.+
T Consensus 118 R~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~l---N~~Lk~ELP~l 174 (224)
T cd07591 118 RNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETL---NDQLKTELPQL 174 (224)
T ss_pred HHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHH
No 476
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=44.77 E-value=1.7e+02 Score=28.37 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 254 LKRERRKQSNRESARRSRLRKQAE-AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 254 ~KR~RRk~sNRESARRSR~RKq~~-leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+|-+-|..+...-++..+...... +..-..+++..+.|.+....++..|++++..|+.|+..||..+..+
T Consensus 36 Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 36 LRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
No 477
>PRK11239 hypothetical protein; Provisional
Probab=44.68 E-value=35 Score=33.32 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENS 306 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~ 306 (394)
...+.|+.+|..|++|...|+.++..|..++
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 478
>PRK14157 heat shock protein GrpE; Provisional
Probab=44.62 E-value=80 Score=31.05 Aligned_cols=60 Identities=8% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcccccCCCCchhhhhhhhccC
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNN 353 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E~~~~~~~~~~p~~~e~lls~~~~ 353 (394)
.+|+.++..|+.+...|+.++.++..+++-++..-..=++++....... -..+||-.+|+
T Consensus 80 ~~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~---------------~~~dLLpvlDn 139 (227)
T PRK14157 80 DDTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIID---------------VLTALLPALDD 139 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhhhhhh
No 479
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=44.45 E-value=82 Score=27.56 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 272 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 317 (394)
Q Consensus 272 ~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr 317 (394)
+.+..+++.|..+...|+.+...|..++..|......+..-...|+
T Consensus 2 ~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 2 MESEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=44.41 E-value=7.4 Score=38.23 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 016182 279 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 329 (394)
Q Consensus 279 eeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~ 329 (394)
.+...+++.....+..|+..|..|-.+++.|+.||..|+++-..++-+..+
T Consensus 118 KDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL~k~~~e 168 (243)
T PF08961_consen 118 KDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARLLKGPVE 168 (243)
T ss_dssp ---------------------------------------------------
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
No 481
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=44.41 E-value=2e+02 Score=33.19 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 253 ELKRERRKQSNRES---------------ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 317 (394)
Q Consensus 253 E~KR~RRk~sNRES---------------ARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr 317 (394)
|+-|.|+++++-+. |..-|+--++..+.|+++++.++....+++..-.+|....+.|+.|..+|+
T Consensus 178 eL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 178 ELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q ss_pred HHHHHhh
Q 016182 318 EKLKSAQ 324 (394)
Q Consensus 318 ~~L~~lq 324 (394)
......+
T Consensus 258 ~~~~~~~ 264 (916)
T KOG0249|consen 258 RSSLEKE 264 (916)
T ss_pred HHHHhhh
No 482
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=44.30 E-value=1.6e+02 Score=23.33 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 321 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~ 321 (394)
++++..++.+++.++.....|......+..+...+..+...|...+.
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.11 E-value=1.1e+02 Score=25.99 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 274 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 316 (394)
Q Consensus 274 Kq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~L 316 (394)
+.+-+.+|+.+++.|+.....|..++..|+.++..+..+.+.|
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.04 E-value=1.5e+02 Score=33.66 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHH
Q 016182 261 QSNRESARRSRLRKQAE-----AEELSRKVDSLIDENASLKSEIN----------------------------QLSENSE 307 (394)
Q Consensus 261 ~sNRESARRSR~RKq~~-----leeLe~rV~~L~~EN~~L~~ei~----------------------------~L~ee~~ 307 (394)
+-+|..---.+.|+... ++.+..+...|+.||..|+.++. ..+....
T Consensus 483 ~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e 562 (716)
T KOG4593|consen 483 QLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLE 562 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016182 308 KLRQENAALLEKLKSAQ 324 (394)
Q Consensus 308 ~L~~EN~~Lr~~L~~lq 324 (394)
.|..||..||..|..+.
T Consensus 563 ~LqaE~~~lk~~l~~le 579 (716)
T KOG4593|consen 563 ELQAELERLKERLTALE 579 (716)
T ss_pred HHHHHHHHHHHHHHHHh
No 485
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=44.04 E-value=1e+02 Score=30.61 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKL-------------------------------RQENAALLEKLKSA 323 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L-------------------------------~~EN~~Lr~~L~~l 323 (394)
++++..|..+...|..+...|..+|..-+++++.+ +.|.++|..++..+
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred h
Q 016182 324 Q 324 (394)
Q Consensus 324 q 324 (394)
|
T Consensus 259 q 259 (259)
T PF08657_consen 259 Q 259 (259)
T ss_pred C
No 486
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.99 E-value=2e+02 Score=34.16 Aligned_cols=72 Identities=25% Similarity=0.292 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 249 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 320 (394)
Q Consensus 249 ~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L 320 (394)
..+.+....+.....-+.|+.......+.+..++.+...++.+......++..++.+..+++.+...|...|
T Consensus 463 ~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 463 YTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 487
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=43.84 E-value=3.4e+02 Score=32.24 Aligned_cols=117 Identities=9% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCccccccCCCCCCccCCCCCCCCCCCCCCCCccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 212 PGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDE 291 (394)
Q Consensus 212 p~~~t~l~~~~~~~~~~k~~~t~~~~~~~~~~~e~~~~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~E 291 (394)
+...+...+...|.-...-.+.....-|+.+.+.....-|++.+..+|+++-+.-.++.++...++-.....+-+.-+..
T Consensus 392 ~s~~s~~S~~s~p~~d~~~~~s~~~~~~~~~~g~~g~r~eke~~ER~r~e~e~~er~~~er~~~E~er~er~e~e~~er~ 471 (1021)
T PTZ00266 392 TSVASVASVASVPSKDDRKYPQDGATHCHAVNGHYGGRVDKDHAERARIEKENAHRKALEMKILEKKRIERLEREERERL 471 (1021)
T ss_pred cccccccccccCCcccccccccccccccccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 016182 292 NASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 329 (394)
Q Consensus 292 N~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~ 329 (394)
-.+-..++++-+.+.+.++.|-.+ |++|..-++...|
T Consensus 472 Erer~er~erer~Erer~erEr~e-rer~erer~~r~e 508 (1021)
T PTZ00266 472 ERERMERIERERLERERLERERLE-RDRLERDRLDRLE 508 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
No 488
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.76 E-value=1.1e+02 Score=32.04 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 252 RELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 252 rE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
.+++++.+.+.++...-+..+.+...+..+...-......-..|......|.+++.+|..+...|+++|...
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 489
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=43.68 E-value=1.4e+02 Score=28.29 Aligned_cols=87 Identities=15% Similarity=0.289 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016182 246 TWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 325 (394)
Q Consensus 246 ~~~~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql 325 (394)
..|-+++..|+.++-. |...+..|.......+++...++..+.|..+--.+++..+++-.....-..+|++-|..-++
T Consensus 9 AGLv~~kkakka~~~k--~k~~k~~~~~~~~~~~~~k~~a~~a~~ek~erdr~Ln~qr~~~~~~K~~~AqikQlI~~~~i 86 (177)
T PF09831_consen 9 AGLVDKKKAKKAKKEK--RKQRKQKRKGGQEEVDEAKAAAERARAEKAERDRELNRQRQAEAERKEIQAQIKQLIEQNRI 86 (177)
T ss_pred ccCccHHHHHHHHHHH--HHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q ss_pred cc-ccchhcc
Q 016182 326 GN-KQEIVLN 334 (394)
Q Consensus 326 ~~-~~E~~~~ 334 (394)
.. .+|+.++
T Consensus 87 ~~~~gdi~yn 96 (177)
T PF09831_consen 87 PREDGDIAYN 96 (177)
T ss_pred CCCCCceeEe
No 490
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=43.59 E-value=2.3e+02 Score=32.55 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016182 252 RELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 324 (394)
Q Consensus 252 rE~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lq 324 (394)
+...+.-+++.-.++-|--=.+|...++..+..+..++.|-..+..+|..|+..++....+...|..+|..+.
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=43.52 E-value=65 Score=36.04 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 016182 276 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQE 330 (394)
Q Consensus 276 ~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E 330 (394)
+.+++|.-+-..|+-|+...+.--..|.+++.+|+.|.+.+|+++..++......
T Consensus 329 akVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~ 383 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDD 383 (832)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 492
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.50 E-value=2.4e+02 Score=31.95 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016182 254 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 254 ~KR~RRk~sNRESARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l 323 (394)
+.-.+|..+-|+.-.+-=..=+.+.+..-.++..|+.+...|+..-..|.++++.+...-..|..++..+
T Consensus 550 eeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 550 EEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=43.44 E-value=73 Score=34.37 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016182 278 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 325 (394)
Q Consensus 278 leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql 325 (394)
+++|...+..|+.+|..|+..++.|++....+..+.-.||+.+..++.
T Consensus 408 ~~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~ 455 (514)
T KOG4370|consen 408 EEELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQE 455 (514)
T ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 494
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=43.31 E-value=1e+02 Score=33.82 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 016182 264 RESARRS--RLRKQAEAEELSRKVDSLIDENASLKSEINQL-------SENSEKLRQENAALLEKLKSA 323 (394)
Q Consensus 264 RESARRS--R~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L-------~ee~~~L~~EN~~Lr~~L~~l 323 (394)
|..++.. ..+.+++++.||.+++.|+.+...|..++..- ..+...|..|...|+.+|..+
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (638)
T PRK10636 549 RREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEEC 617 (638)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK10722 hypothetical protein; Provisional
Probab=43.18 E-value=92 Score=31.10 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 266 SARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 316 (394)
Q Consensus 266 SARRSR~RKq~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~L 316 (394)
++-|.|-+|.+ ++-+.+++.|.+++..|+.++..++++++.|..=-++|
T Consensus 161 aeEr~Ry~rLQ--q~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 161 AEERQRYQKLQ--QSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 496
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=43.06 E-value=2.4e+02 Score=30.43 Aligned_cols=74 Identities=32% Similarity=0.453 Sum_probs=0.0
Q ss_pred cchHHHHHHH----HHHHhHHHHHHHHHH--HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 016182 249 QNERELKRER----RKQSNRESARRSRLR--KQAEAEELSRKVD--------------SLIDENASLKSEINQLSENSEK 308 (394)
Q Consensus 249 ~dErE~KR~R----Rk~sNRESARRSR~R--Kq~~leeLe~rV~--------------~L~~EN~~L~~ei~~L~ee~~~ 308 (394)
+-+||+.|.| |.+..--+|--|-.- |.+|-+||+++++ +...+.+.++.++..|.++|..
T Consensus 360 qHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQ 439 (593)
T KOG4807|consen 360 QHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQ 439 (593)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 016182 309 LRQENAALLEKLKS 322 (394)
Q Consensus 309 L~~EN~~Lr~~L~~ 322 (394)
.-.||..|.+.|..
T Consensus 440 KCLEnahLaqalEa 453 (593)
T KOG4807|consen 440 KCLENAHLAQALEA 453 (593)
T ss_pred HHHHHHHHHHHHHH
No 497
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=43.00 E-value=21 Score=31.80 Aligned_cols=64 Identities=27% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcccccCCCCchhhhhhhhccC
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNN 353 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~lql~~~~E~~~~~~~~~~p~~~e~lls~~~~ 353 (394)
...+++|+.+++.|+.+...|..++.++..+++.+.......+..+....+.. -...||..+|+
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~---------------~~~~ll~v~D~ 73 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEK---------------FLKDLLPVLDN 73 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---------------HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
No 498
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.97 E-value=1e+02 Score=33.60 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcccccchhcccccCCCCchhhhhhh
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA-----QLGNKQEIVLNEDKRVTPVSTENLLS 349 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~L~~l-----ql~~~~E~~~~~~~~~~p~~~e~lls 349 (394)
+.+|..+..+|.+|+.+-..-..+|.+++.++.+|....-.|.-++.-+ .|...||.+.. ..+.||.
T Consensus 354 r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~--------Kldtll~ 425 (508)
T KOG3091|consen 354 RIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRA--------KLDTLLA 425 (508)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHH--------HHHHHHH
Q ss_pred hccC
Q 016182 350 RVNN 353 (394)
Q Consensus 350 ~~~~ 353 (394)
.|+.
T Consensus 426 ~ln~ 429 (508)
T KOG3091|consen 426 QLNA 429 (508)
T ss_pred HhcC
No 499
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=42.97 E-value=2.9e+02 Score=25.88 Aligned_cols=111 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCccccCCCCCCccc-cccCCCCCCccCCCCCCCCCCCCCCCCccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016182 204 KPVGPVLSPGMPTKL-ELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELS 282 (394)
Q Consensus 204 ~~vg~v~~p~~~t~l-~~~~~~~~~~k~~~t~~~~~~~~~~~e~~~~dErE~KR~RRk~sNRESARRSR~RKq~~leeLe 282 (394)
..+|...+|+....+ +-+...++......+.. -+--++-|+...+|++.||++...=-+.....-=.|+.....+.+
T Consensus 2 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~L--R~~tallDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~e 79 (157)
T PF15236_consen 2 PTPGSQSSPSEDENLGKASRVTSMQSSSKTSFL--RGMTALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEE 79 (157)
T ss_pred CCCccCCCCCchhhhcccccccccccccccCcc--ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 283 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 319 (394)
Q Consensus 283 ~rV~~L~~EN~~L~~ei~~L~ee~~~L~~EN~~Lr~~ 319 (394)
.+...-..|-..|..+-..++++ ++.|+...+.+
T Consensus 80 rr~~EE~~EE~Rl~rere~~q~~---~E~E~~~~~~K 113 (157)
T PF15236_consen 80 RRRREEEEEEERLAREREELQRQ---FEEEQRKQREK 113 (157)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 500
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=42.94 E-value=69 Score=30.28 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016182 275 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 311 (394)
Q Consensus 275 q~~leeLe~rV~~L~~EN~~L~~ei~~L~ee~~~L~~ 311 (394)
.+++..|+.+.+.|+.++..|..++..+.+.+..|..
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~ 146 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIV 146 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!