RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016183
(394 letters)
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 543 bits (1401), Expect = 0.0
Identities = 235/393 (59%), Positives = 287/393 (73%), Gaps = 14/393 (3%)
Query: 2 SDDEREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQT 61
DE++E+ L++PEVVTKYK A EIAN L+ VV C PG K+VD+CEKGD+FI E+T
Sbjct: 2 GKDEQQEQAYSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEET 61
Query: 62 GNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDET-VLQEGDMIKIDLGCHIDGFIA 120
++K +K++E+G+AFP+C+SVNN + HFSPL SD+ +L+EGD++KIDLGCHIDGFIA
Sbjct: 62 AKIFKK-EKEMEKGIAFPTCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIA 120
Query: 121 VVAHTHVL---QDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDC 177
+VAHT V+ Q+ PVTGR ADVIAAA+ AAE ALRLV+PG N VTEAI KVA ++ C
Sbjct: 121 LVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGC 180
Query: 178 KIVEGVLSHQLKQFVIDGNKVVLSVSNPDTR--VDDAEFEENEVYAVDIVTSTGDGKPKL 235
VEG+LSHQLKQ VIDG KV++S + + D AEFEENEVYAVDI+ STG+GK K
Sbjct: 181 TPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVSTGEGKAKD 240
Query: 236 LDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVN 294
D++ TTIYKR K Y LKMKASR FSEI ++F MPFT R E EKRAR+GLVECV
Sbjct: 241 ADQR-TTIYKRDPSKTYGLKMKASRAFFSEIERRFDAMPFTLRNFEDEKRARMGLVECVK 299
Query: 295 HELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWL 352
HELLQPYPVL+EK G++VA KFTVLLMPNG RITS + +S + DPEIKA L
Sbjct: 300 HELLQPYPVLYEKEGEFVAQFKFTVLLMPNGPMRITSGEFEPDLYKSEMEVQDPEIKALL 359
Query: 353 ALGIKTKKKGGGKKKKGKKGDKAEESTEAEPMD 385
A IK KK KKK K E +TE E M+
Sbjct: 360 ASPIKRKK---QKKKAKKASKTGEAATEGETME 389
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 253 bits (648), Expect = 3e-83
Identities = 113/182 (62%), Positives = 141/182 (77%), Gaps = 5/182 (2%)
Query: 19 VTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAF 78
VTKYK+A +IANK L+ V+S C PG K+VDLCEKGD I E+ G +YK +KK+E+G+AF
Sbjct: 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKK-EKKLEKGIAF 59
Query: 79 PSCVSVNNTLCHFSPLASD-ETVLQEGDMIKIDLGCHIDGFIAVVAHTHVL---QDGPVT 134
P+C+SVNN +CHFSPL SD L++GD++KIDLGCHIDG+IAVVAHT V+ + PVT
Sbjct: 60 PTCISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVT 119
Query: 135 GRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVID 194
G+ ADVIAAA+ A E ALRL+RPG +N D+TEAIQKV + C VEGVLSHQLK+ V
Sbjct: 120 GKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSS 179
Query: 195 GN 196
G
Sbjct: 180 GE 181
Score = 70.1 bits (172), Expect = 8e-14
Identities = 27/42 (64%), Positives = 30/42 (71%)
Query: 289 LVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRIT 330
LVECV H LL PYPVL+EK G+ VA K TVLL PNG +T
Sbjct: 186 LVECVKHGLLFPYPVLYEKEGEVVAQFKLTVLLTPNGVTVLT 227
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 179 bits (456), Expect = 1e-53
Identities = 88/308 (28%), Positives = 154/308 (50%), Gaps = 28/308 (9%)
Query: 21 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPS 80
KY+ A EI + + S KPG+ ++++ E ++ IRE G AFP
Sbjct: 3 KYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGA------------GPAFPV 50
Query: 81 CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADV 140
+S+N H++P A D+TVL+EGD++K+D G H+DG+IA A T + D+
Sbjct: 51 NLSINECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTV-----DFDPKYDDL 105
Query: 141 IAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGNKVVL 200
+ AA A A++ P + ++ EAI++V ++ K + + H ++++ + K +
Sbjct: 106 LEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIP 165
Query: 201 SVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASR 260
+V + EE +VYA++ +TG G + D + +IY DK L++ +R
Sbjct: 166 NVKGGEG----TRLEEGDVYAIEPFATTGKG--YVHDGPECSIYMLNRDKP--LRLPRAR 217
Query: 261 FIFSEINQKFPIMPFTARALE---EKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKF 317
+ I + F +PF R L+ E + + L ++ PYPVL E G YVA +
Sbjct: 218 KLLDVIYENFGTLPFARRWLDRLGETKLLMALKNLCKAGIVYPYPVLKEISGGYVAQFEH 277
Query: 318 TVLLMPNG 325
T+++ +G
Sbjct: 278 TIIVREDG 285
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 165 bits (421), Expect = 2e-48
Identities = 91/312 (29%), Positives = 154/312 (49%), Gaps = 27/312 (8%)
Query: 21 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPS 80
KY A +IA+K + KPG K++D+ E ++ IRE AFP
Sbjct: 4 KYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGA------------KPAFPC 51
Query: 81 CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADV 140
+S+N H++P DE V EGD++K+DLG H+DG+IA A T L G+ D+
Sbjct: 52 NISINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDL-----GGKYEDL 106
Query: 141 IAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGNKVVL 200
+ A+ A E A+ +VRPG ++ I++ ++ K + + H L+++ +
Sbjct: 107 VEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYELHAG---P 163
Query: 201 SVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASR 260
S+ N D + EE +VYA++ + G+GK + + IY + +N +++ A+R
Sbjct: 164 SIPNYDEG-GGVKLEEGDVYAIEPFATDGEGKVV--EGPEVEIYS--LLRNRPVRLPAAR 218
Query: 261 FIFSEINQKFPIMPFTARALEEKRA--RLGLVECVNHELLQPYPVLHEKPGDYVAHIKFT 318
+ EI +++ +PF R LE +L L + L YPVL E G V+ + T
Sbjct: 219 KLLEEIEEEYNTLPFAERWLEGLFGEDKLELRRLLKAGALYGYPVLKEVKGGLVSQAEHT 278
Query: 319 VLLMPNGSDRIT 330
V++ +G + T
Sbjct: 279 VIVTEDGCEVTT 290
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 161 bits (411), Expect = 2e-47
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 11/234 (4%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
+ +PE + K + A +IA KAL+ V S KPGV ++L E + FIRE+ Y
Sbjct: 5 IKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREK--GAYPA--FLG 60
Query: 73 ERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGP 132
+G FP+C+SVN + H P D+ VL+EGD++KID+G HIDG+I A T V+
Sbjct: 61 YKGFPFPTCISVNEVVAHGIP--GDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVV-GEV 117
Query: 133 VTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFV 192
A ++ A A + V+PG + D+ AIQ+ A + +V + H + +
Sbjct: 118 SDEDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGR-E 176
Query: 193 IDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKR 246
+ + + T V +E V+A++ + +TG G+ + T+ +
Sbjct: 177 LHEEPSIPNYGKDGTGV---RLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTK 227
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 152 bits (386), Expect = 2e-43
Identities = 88/317 (27%), Positives = 161/317 (50%), Gaps = 28/317 (8%)
Query: 17 EVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGV 76
E K+ A +I +K + PGVK++++ E ++ IRE
Sbjct: 3 ERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAE------------P 50
Query: 77 AFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR 136
AFP +S+N HF+P A D+TV ++GD++K+DLG H+DG+IA A T L D +
Sbjct: 51 AFPCNISINECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGD-----Q 105
Query: 137 AADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGN 196
+++ AA A A++ +R G + ++ +AIQ+V ++ K + + H + + + G
Sbjct: 106 YDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGG 165
Query: 197 KVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKM 256
K + +V DT + EE +V A++ + G G D + +IY ++ +++
Sbjct: 166 KSIPNVKERDTT----KLEEGDVVAIEPFATDGVGYVT--DGGEVSIYAFLAER--PVRL 217
Query: 257 KASRFIFSEINQKFPIMPFTARALEE---KRARLGLVECVNHELLQPYPVLHEKPGDYVA 313
++R + I++ + +PF R L++ ++ L + H L+ YPVL+E G YVA
Sbjct: 218 DSARNLLKTIDENYGTLPFARRWLDKLGDEKYLFALNNLIRHGLIYDYPVLNEISGGYVA 277
Query: 314 HIKFTVLLMPNGSDRIT 330
+ T+L+ +G + T
Sbjct: 278 QWEHTILVEEHGKEVTT 294
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 132 bits (333), Expect = 3e-34
Identities = 87/333 (26%), Positives = 158/333 (47%), Gaps = 32/333 (9%)
Query: 7 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYK 66
E++EL+ S E + AAE+ + + S KPGVK++D+CE+ +S RE
Sbjct: 146 EKRELEKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIE---- 201
Query: 67 NVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTH 126
++ G AFP+ S+N+ H++P D+TVL D+ K+D G H++G I A T
Sbjct: 202 --ADGLKCGWAFPTGCSLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTV 259
Query: 127 VLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKI------- 179
+ ++ A A ++ + D+ AIQ+V +++ +I
Sbjct: 260 AFNP-----KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPI 314
Query: 180 --VEGVLSHQLKQFVIDGNKVVLSV-SNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLL 236
+ + H + ++I G K V V +TR+ EE E++A++ STG G +
Sbjct: 315 KSIRNLNGHSIGPYIIHGGKSVPIVKGGENTRM-----EEGELFAIETFASTGRG--YVN 367
Query: 237 DEKQTTIYKRAVDKNY-HLKMKASRFIFSEINQKFPIMPFTARALE---EKRARLGLVEC 292
++ + + Y + + L++ ++ + IN F + F R L+ + R L L +
Sbjct: 368 EDLECSHYMKDPGAEFVPLRLPKAKQLLKHINTNFGTLAFCRRWLDRLGQDRHLLALKQL 427
Query: 293 VNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNG 325
V+ ++ PYP L + G Y + ++ T+LL P
Sbjct: 428 VDAGIVNPYPPLCDVRGSYTSQMEHTILLRPTC 460
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 116 bits (292), Expect = 1e-30
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 17/157 (10%)
Query: 21 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPS 80
+ AA IA AL+ ++ +PGV +L + ++ + G RG AFP
Sbjct: 2 LMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGG----------ARGPAFPP 51
Query: 81 --CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAA 138
N + H+ P + VL++GD++ ID+G DG+ + + T V+ G T
Sbjct: 52 IVASGPNAAVPHYIP---SDRVLKDGDLVLIDVGAEYDGYHSDITRTFVV--GKPTPEQR 106
Query: 139 DVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAH 175
++ A A E A+ V+PG DV A ++V
Sbjct: 107 ELYEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEG 143
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 86.3 bits (215), Expect = 2e-19
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQ------TGNMYK 66
+ +PE + K + A +A + L + KPGV +L + +IR+Q G Y
Sbjct: 5 IKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLG--YH 62
Query: 67 NVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTH 126
K I C SVN +CH P + VL+EGD++ ID+ DG+ + T
Sbjct: 63 GFPKSI--------CTSVNEVVCHGIP---SDKVLKEGDIVNIDVTVIKDGYHGDTSRTF 111
Query: 127 VLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSH 186
+ G ++ + A + + V+PG + D+ AIQK A A +V H
Sbjct: 112 GV--GEISPEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGH 169
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 84.3 bits (209), Expect = 1e-18
Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 17/237 (7%)
Query: 11 LDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKK 70
+ L SP+ + K + A +A + L+ + E KPGV +L FI + K
Sbjct: 1 ISLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEK------HGAKP 54
Query: 71 KIERGVAFPS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVL 128
FP C+SVN + H P D+ VL++GD++ ID+G DG+ A T ++
Sbjct: 55 AFLGYYGFPGSVCISVNEVVIHGIP---DKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLV 111
Query: 129 QDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQL 188
G ++ A ++ + A+ +PG + ++ AIQK A A +V H +
Sbjct: 112 --GKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGI 169
Query: 189 KQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYK 245
+ + + N + + +E V+ ++ + +TG + + T K
Sbjct: 170 GRKFHEE----PQIPNYGKKFTNVRLKEGMVFTIEPMVNTGTEEITTAADGWTVKTK 222
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 84.1 bits (209), Expect = 1e-18
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFP--S 80
+ A I + L + KPGV +L + FI E FP
Sbjct: 5 REAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEE------HGAYPAPLGYYGFPKSI 58
Query: 81 CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADV 140
C SVN +CH P D+ VL++GD++ ID+G +DG+ A T ++ G V+ A +
Sbjct: 59 CTSVNEVVCHGIP---DDRVLKDGDIVNIDVGVELDGYHGDSARTFIV--GEVSEEAKKL 113
Query: 141 IAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSH 186
+ A + V+PG + D+ AI+K A + +V H
Sbjct: 114 VEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGH 159
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 83.3 bits (206), Expect = 1e-18
Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 28/209 (13%)
Query: 19 VTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAF 78
+ + + AAEIA A+ +PGV ++ + +R G A
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGG------------YPAG 48
Query: 79 PSCVSVNN--TLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR 136
P+ V L H+ P D+ LQEGD++ +DLG DG+ A + T V+ G +
Sbjct: 49 PTIVGSGARTALPHYRP---DDRRLQEGDLVLVDLGGVYDGYHADLTRTFVI--GEPSDE 103
Query: 137 AADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEG-VLSHQLKQFVIDG 195
++ A A E AL +RPG ++V A ++V H G H + + +
Sbjct: 104 QRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIGLEIHEP 163
Query: 196 NKVVLSVSNPDTRVDDAEFEENEVYAVDI 224
V DD E V+AV+
Sbjct: 164 -----PVLKAG---DDTVLEPGMVFAVEP 184
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 73.3 bits (181), Expect = 7e-15
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 13/183 (7%)
Query: 6 REEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMY 65
+E + +++ SP + K + I AL+ + +PG+ +L + + E
Sbjct: 3 QEGRGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEE----HG 58
Query: 66 KNVKKKIERGVAFPS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVA 123
+ G FP C+SVN + H P V+++GD++ ID+ ++DG+
Sbjct: 59 AIPSPEGYYG--FPGSTCISVNEEVAHGIP---GPRVIKDGDLVNIDVSAYLDGYHGDTG 113
Query: 124 HTHVLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGV 183
T + GPV+ A + A A ++ V+ G+ D+ AI+ A + +V +
Sbjct: 114 ITFAV--GPVSEEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDL 171
Query: 184 LSH 186
H
Sbjct: 172 TGH 174
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 61.4 bits (149), Expect = 2e-10
Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 31/194 (15%)
Query: 4 DEREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGN 63
+ + +++ +PE + + + IA + L KPGV ++ D + E T
Sbjct: 128 NSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEI----DRVVHEAT-- 181
Query: 64 MYKNVKKKIERGVAFPS-----------CVSVNNTLCHFSPLASDETVLQEGDMIKIDLG 112
I G +PS C SVN +CH P D L++GD++ +D+
Sbjct: 182 --------IAAG-GYPSPLNYHFFPKSCCTSVNEVICHGIP---DARKLEDGDIVNVDVT 229
Query: 113 CHIDGFIAVVAHTHVLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVA 172
+ G + T + G V + ++ E A+ +V+PG + ++V E I + A
Sbjct: 230 VYYKGCHGDLNETFFV--GNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHA 287
Query: 173 AAHDCKIVEGVLSH 186
+V+ H
Sbjct: 288 TMSGLSVVKSYCGH 301
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 59.4 bits (144), Expect = 1e-09
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 18/163 (11%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIER 74
SP + K + AAEIA+ AL+ + +PG+ ++ + + +R+
Sbjct: 156 SPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGA-----------E 204
Query: 75 GVAFP--SCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGP 132
G +F N L H++P SD L++GD++ IDLG +G+ + + T + G
Sbjct: 205 GPSFDTIVASGENAALPHYTP--SDRK-LRDGDLVLIDLGGVYNGYCSDITRTFPI--GK 259
Query: 133 VTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAH 175
+ ++ A A E A+ +RPG +V A ++V
Sbjct: 260 PSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKA 302
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 51.4 bits (123), Expect = 3e-07
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKI 72
+ +PE + K + A ++ + L + K GV +L E +E Y + +
Sbjct: 43 IKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKE-----YNAIPAPL 97
Query: 73 ERGVA-FPS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQ 129
G FP C S+N +CH P ++ L+ GD++ ID+ C +DG+ + ++
Sbjct: 98 NYGSPPFPKTICTSLNEVICHGIP---NDIPLKNGDIMNIDVSCIVDGYYGDC--SRMVM 152
Query: 130 DGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSH 186
G V+ V A+ A+ +++PG ++ E I+ A + +V+ + H
Sbjct: 153 IGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGH 209
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 48.7 bits (117), Expect = 1e-06
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 18/151 (11%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCV 82
+ AA IA+KA + ++ KPG+ ++ + + F+R+ G +F + V
Sbjct: 5 RKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGA-----------EGPSFDTIV 53
Query: 83 S--VNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADV 140
+ N+ L H P + ++EGD++ ID G DG+ + + T + G + ++
Sbjct: 54 ASGPNSALPHGVP---SDRKIEEGDLVLIDFGAIYDGYCSDITRTVAV--GEPSDELKEI 108
Query: 141 IAAANTAAEVALRLVRPGKKNKDVTEAIQKV 171
A + A++ V+PG K+V +A + V
Sbjct: 109 YEIVLEAQQAAIKAVKPGVTAKEVDKAARDV 139
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 43.6 bits (102), Expect = 9e-05
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 91 FSP-LASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADVIAAANTAAE 149
FSP L T GD+IK D G +DG+ A +A T V+ + P R + T E
Sbjct: 159 FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITR--KIYQTIRTGHE 216
Query: 150 VALRLVRPGKKNKDVTEAIQKV 171
L +V PG K KDV ++ +V
Sbjct: 217 HMLSMVAPGVKMKDVFDSTMEV 238
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 43.9 bits (103), Expect = 9e-05
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 91 FSP-LASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADVIAAANTAAE 149
FSP L T GD+IK D G +DG+ A +A T V+ + P R + T E
Sbjct: 242 FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITR--KIYQTIRTGHE 299
Query: 150 VALRLVRPGKKNKDVTEAIQKV 171
L +V PG K KDV ++ +V
Sbjct: 300 HMLSMVAPGVKMKDVFDSTMEV 321
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 42.9 bits (102), Expect = 1e-04
Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 24/164 (14%)
Query: 25 AAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSV 84
A +I+ +A + + +PG+ +L + + R + G ++
Sbjct: 7 ACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSR-GA---------RLAYSYIVAAGS 56
Query: 85 NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPV----TGRAADV 140
N + H+ L++GD++ ID G G+ + + T PV T ++
Sbjct: 57 NAAILHYVHNDQ---PLKDGDLVLIDAGAEYGGYASDITRTF-----PVNGKFTDEQREL 108
Query: 141 IAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAH--DCKIVEG 182
A A + A+ +PG +D+ +V A + I++G
Sbjct: 109 YEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKG 152
Score = 31.0 bits (71), Expect = 0.91
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 27 EIANKALQLVVSECKPGVKIVDLCEKGDSFIRE---QTGNMYKNVKKKIERGV 76
E A + ++ CKPGV D+ + E + G + +V + +E G
Sbjct: 110 EAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGA 162
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 43.2 bits (102), Expect = 2e-04
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 39/170 (22%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDL-CEKGDSFIREQTGNMYKNVKKKIE 73
SPE + + A EI+ A + +C+PG+ L E F R
Sbjct: 175 SPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRH-------------- 220
Query: 74 RGVAFPSCVSV-----NNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVL 128
G +PS ++ N + H++ +E+ +++GD++ ID GC G+ + T
Sbjct: 221 -GARYPSYNTIVGSGENGCILHYT---ENESEMRDGDLVLIDAGCEYKGYAGDITRTF-- 274
Query: 129 QDGPVTGRAA-------DVIAAANTAAEVALRLVRPGKKNKDVTEAIQKV 171
PV G+ D++ + E +LRL RPG ++VT + ++
Sbjct: 275 ---PVNGKFTPAQREIYDIVLE---SLETSLRLYRPGTSIREVTGEVVRI 318
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 41.6 bits (97), Expect = 4e-04
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 41 KPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETV 100
KPG+ ++ ++F+ ++K G + C SVN+ +CH P +
Sbjct: 32 KPGITTKEI----NTFVEAYLEKHGATSEQKGYNGYPYAICASVNDEMCHAFP---ADVP 84
Query: 101 LQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADVIAAANTAAEVALRLVRPGKK 160
L EGD++ ID+ +++G ++ A T+ + G V+ A ++ A A + G +
Sbjct: 85 LTEGDIVTIDMVVNLNGGLSDSAWTYRV--GKVSDEAEKLLLVAENALYKGIDQAVIGNR 142
Query: 161 NKDVTEAIQKVAAAHDCKIVEGVLSH 186
D+ AI+ A + H
Sbjct: 143 VGDIGYAIESYVANEGFSVARDFTGH 168
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 40.4 bits (94), Expect = 0.001
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 90 HFSP-LASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVL-QDGPVTGRAADVIAAANTA 147
+FSP + +D T + GD+IK D G + G+ A +A T VL + +T + D I T
Sbjct: 240 NFSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTI---RTG 296
Query: 148 AEVALRLVRPGKKNKDVTEAIQKV 171
E L +V PG K K V ++ V
Sbjct: 297 HEHMLSMVAPGVKLKAVFDSTMAV 320
>gnl|CDD|220564 pfam10094, DUF2332, Uncharacterized protein conserved in bacteria
(DUF2332). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 342
Score = 30.8 bits (70), Expect = 1.4
Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 95 ASDETVLQEGDMI---KIDLGCHIDGFIAVVAHTHVLQDGPVTGRAA--DVIAAANTAA 148
L+ GD L DG + VV HT V Q P RAA I AA A
Sbjct: 234 RQAPPQLERGDAADWLADRLAEAPDGALRVVYHTIVWQYLPAATRAAIEAAIEAAGARA 292
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase.
Length = 800
Score = 30.6 bits (69), Expect = 1.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 48 DLCEKGDSFIREQTGNMYKNVKKKIERG--VAFPSCVSVNNTLCHFSPLASDETVLQE 103
+ CEKG SF RE + + + G VAFPS + + L P D VL+E
Sbjct: 164 EKCEKGMSFFRENICKLEDENAEHMPIGFEVAFPSLLEIAKNLDIEVP--YDSPVLKE 219
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 28.2 bits (63), Expect = 1.9
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 355 GIKTKKKGGGKKKKGKKGDKAEESTEAEPMDATNGAAT 392
+K K K KKK KK K +S E + +
Sbjct: 9 KLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKS 46
>gnl|CDD|233647 TIGR01938, nqrC, NADH:ubiquinone oxidoreductase,
Na(+)-translocating, C subunit. This model represents
the NqrC subunit of the six-protein, Na(+)-pumping
NADH-quinone reductase of a number of marine and
pathogenic Gram-negative bacteria. This oxidoreductase
complex functions primarily as a sodium ion pump
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 251
Score = 29.7 bits (67), Expect = 2.5
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 187 QLKQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKR 246
Q + ++D K +L+ + + E +YA I + +LLD + T K
Sbjct: 33 QEENALLDKQKQILAAAGLLDPIVAKGKEVLALYAERI-------ERRLLDLQTGTFTKA 85
Query: 247 AVDKNYHLKMKASRFIFSEINQKFPIMPFTARALEEKRA 285
++N + + Q+ + + +R
Sbjct: 86 FEEENL------DQREAFKDPQESIALLAFEDIAKIRRR 118
>gnl|CDD|132319 TIGR03276, Phn-HD, phosphonate degradation operons associated HDIG
domain protein. This small clade of proteins are found
adjacent to other genes implicated in the catabolism of
phosphonates. They are members of the TIGR00277 domain
family and contain a series of five invariant histidines
(the domain in general has only four).
Length = 179
Score = 28.5 bits (64), Expect = 4.1
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 123 AHTHVLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEG 182
+ LQ GP T AD A A+RL R KD + H + E
Sbjct: 121 RRSLELQGGPFTAAEADAFERD-PHAADAIRLRRWDDLAKD--PGVPTPDLDHFMPLAER 177
Query: 183 VL 184
L
Sbjct: 178 HL 179
>gnl|CDD|191491 pfam06313, ACP53EA, Drosophila ACP53EA protein. This family
consists of several Drosophila ACP53EA accessory gland
(seminal) proteins.
Length = 93
Score = 27.4 bits (61), Expect = 4.4
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 21 KYKSAAEIANKALQLVVSECKPGVKIVDLC-------EKGDSFIREQTGNMYKNVKKKI 72
K E+ KAL ++ P VK + C K S + Y+ +KK +
Sbjct: 3 KLLKCTEVGTKALASLIENTIPAVKELAKCIDYQPKLGKDLSILWYLK-LGYQFLKKLV 60
>gnl|CDD|233705 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin is
an insoluble storage polymer for carbon, nitrogen, and
energy, found in most Cyanobacteria. The polymer has a
backbone of L-aspartic acid, with most Asp side chain
carboxyl groups attached to L-arginine. The polymer is
made by this enzyme, cyanophycin synthetase, and
degraded by cyanophycinase. Heterologously expressed
cyanophycin synthetase in E. coli produces a closely
related, water-soluble polymer with some Arg replaced by
Lys. It is unclear whether enzymes that produce soluble
cyanophycin-like polymers in vivo in non-Cyanobacterial
species should be designated as cyanophycin synthetase
itself or as a related enzyme. This model makes the
designation as cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions [Cellular
processes, Biosynthesis of natural products].
Length = 864
Score = 29.0 bits (65), Expect = 5.1
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 122 VAHTHVLQDGPVTGRAADVIAAANTAAEVALR------LVRPGKKNKDVTEAIQKVAAAH 175
H+ G I A EVA+ L G+ + A+ VAAA
Sbjct: 637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAVAAAW 696
Query: 176 DCKIVEGVLSHQLKQFVIDGN 196
+ ++ ++ F D
Sbjct: 697 ALGVPIELIRAGIRTFDADAA 717
>gnl|CDD|193529 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases with similarity
to acetylornithine deacetylases and
succinyl-diaminopimelate desuccinylases. Peptidase M20
family, Uncharacterized protein subfamily with
similarity to acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze
analogous reactions and share a common activator, the
metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad
range of substrates, including N-acetylornithine,
alpha-N-acetylmethionine and alpha-N-formylmethionine,
while DapE catalyzes the hydrolysis of
N-succinyl-L,L-diaminopimelate (L,L-SDAP) to
L,L-diaminopimelate and succinate. Proteins in this
subfamily are mostly fungal, and have been inferred by
homology as being related to both ArgE and DapE.
Length = 335
Score = 28.7 bits (65), Expect = 5.9
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 19/102 (18%)
Query: 135 GRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVID 194
G AA+VI A A VA+RL D E V + V G+L+ ++
Sbjct: 219 GVAANVIPAH-AEASVAIRLAA------DPPEVKDIVE-----RAVAGILTEDIELVFTS 266
Query: 195 GNKVVLSVSNPDTRVDDAEFEENEV-YAVDIVTSTGDGKPKL 235
V VD FE V Y DI G K L
Sbjct: 267 EYPPV------YLDVDVDGFETIVVAYGTDIPNLKGWHKRYL 302
>gnl|CDD|226587 COG4102, COG4102, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 418
Score = 28.7 bits (64), Expect = 6.4
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 94 LASDETVLQEGD--MIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADVIAAANTAAEVA 151
A L M+ DL +D +A L G T AA A +A
Sbjct: 183 WAPSPLFLSAARLAMLLNDLYGVLDPALA-----AALATGLDTEAAASGALAGVSAPPAF 237
Query: 152 LRLVRPGKKNKDVTEAIQKVAAA 174
G + E ++VAA
Sbjct: 238 TNKATGGTQTGSGMEQARQVAAT 260
>gnl|CDD|107294 cd06299, PBP1_LacI_like_13, Ligand-binding domain of DNA-binding
regulatory protein from Corynebacterium glutamicum which
has a unique ability to produce significant amounts of
L-glutamate directly from cheap sugar and ammonia. This
group includes the ligand-binding domain of DNA-binding
regulatory protein from Corynebacterium glutamicum which
has a unique ability to produce significant amounts of
L-glutamate directly from cheap sugar and ammonia. This
regulatory protein is a member of the LacI-GalR family
of bacterial transcription repressors. The LacI-GalR
family repressors are composed of two functional
domains: an N-terminal HTH (helix-turn-helix) domain,
which is responsible for the DNA-binding specificity,
and a C-terminal ligand-binding domain, which is
homologous to the sugar-binding domain of ABC-type
transport systems that contain the type I periplasmic
binding protein-like fold. As also observed in the
periplasmic binding proteins, the C-terminal domain of
the bacterial transcription repressor undergoes a
conformational change upon ligand binding which in turn
changes the DNA binding affinity of the repressor.
Length = 265
Score = 28.1 bits (63), Expect = 7.6
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 17/98 (17%)
Query: 96 SDETVLQEGDMIKIDLGCHIDGFIAVVAH---THVLQDGPVTGRAADVIAAANTAAEVAL 152
SDE E + L +DG I VV H L+D + R V+ +
Sbjct: 37 SDENPETENRYLDNLLSQRVDGII-VVPHEQSAEQLED--LLKRGIPVVFVDREITGSPI 93
Query: 153 RLV----RPGKKNKDVTEAIQKVAAAHDCKIVEGVLSH 186
V +PG +TEA+ + A KI G +S
Sbjct: 94 PFVTSDPQPG-----MTEAVSLLVALGHKKI--GYISG 124
>gnl|CDD|129286 TIGR00182, plsX, fatty acid/phospholipid synthesis protein PlsX.
This protein of fatty acid/phospholipid biosynthesis,
called PlsX after the member in Streptococcus
pneumoniae, is proposed to be a phosphate
acyltransferase that partners with PlsY (TIGR00023) in a
two-step 1-acylglycerol-3-phosphate biosynthesis pathway
alternative to the one-step PlsB (EC 2.3.1.15) pathway
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 322
Score = 27.8 bits (62), Expect = 9.7
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 23/88 (26%)
Query: 135 GRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQK--------------VAAAHDCKIV 180
GRA VI+A N+ A + L L+R G+ A+ V A DCK
Sbjct: 82 GRADAVISAGNSGALMGLALLRLGRIKGIDRPALMTLLPTVNGDWFVLLDVGANVDCK-- 139
Query: 181 EGVLSHQLKQFVIDGN---KVVLSVSNP 205
L QF + G+ K VL V +P
Sbjct: 140 ----PKYLVQFALMGSVYSKKVLGVDSP 163
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.369
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,884,691
Number of extensions: 1953297
Number of successful extensions: 1796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1712
Number of HSP's successfully gapped: 49
Length of query: 394
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 295
Effective length of database: 6,546,556
Effective search space: 1931234020
Effective search space used: 1931234020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.2 bits)