RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016183
(394 letters)
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 436 bits (1122), Expect = e-152
Identities = 198/397 (49%), Positives = 263/397 (66%), Gaps = 14/397 (3%)
Query: 3 DDEREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTG 62
E E++E + VVTKYK +IAN+ L+ +V GV ++ LCEKGD+ I E+TG
Sbjct: 9 SGEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETG 68
Query: 63 NMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDET-VLQEGDMIKIDLGCHIDGFIAV 121
++K +K++++G+AFP+ +SVNN +CHFSPL SD+ +L+EGD++KIDLG H+DGFIA
Sbjct: 69 KIFKK-EKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIAN 127
Query: 122 VAHTHVL---QDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCK 178
VAHT V+ Q VTGR ADVI AA+ AE ALRLV+PG +N VTEA KVA + +C
Sbjct: 128 VAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCT 187
Query: 179 IVEGVLSHQLKQFVIDGNKVVLSVSNPDTRV--DDAEFEENEVYAVDIVTSTGDGKPKLL 236
+EG+LSHQLKQ VIDG K ++ + + AEFE +EVYAVD++ S+G+GK K
Sbjct: 188 PIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDA 247
Query: 237 DEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNH 295
++ TTIYKR K Y LKMK SR FSE+ ++F MPFT RA E EK+AR+G+VEC H
Sbjct: 248 GQR-TTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKH 306
Query: 296 ELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWLA 353
ELLQP+ VL+EK G++VA KFTVLLMPNG RITS + +S + D E+KA L
Sbjct: 307 ELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQ 366
Query: 354 LGIKTKKKGGGKKKKGKKGDKAEESTEAEPMDATNGA 390
K + KKKK K AE +T E ++
Sbjct: 367 SSASRKTQ---KKKKKKASKTAENATSGETLEENEAG 400
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 366 bits (943), Expect = e-127
Identities = 81/316 (25%), Positives = 148/316 (46%), Gaps = 28/316 (8%)
Query: 19 VTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAF 78
K A EIA K + + +PG+ +++L E + I E G AF
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGG------------KPAF 50
Query: 79 PSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAA 138
P +S+N H++P D TVL+EGD +KID+G HIDGFIA A T V
Sbjct: 51 PVNLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTV-----RVGMEED 105
Query: 139 DVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGNKV 198
+++ AA A A+ + R G + K++ +AI+ K + + H+++++ +
Sbjct: 106 ELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGIS 165
Query: 199 VLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKA 258
+ ++ P D+ +E +V+A++ + G G+ + T IY ++ +++
Sbjct: 166 IPNIYRPH---DNYVLKEGDVFAIEPFATIGAGQVI--EVPPTLIYMYV--RDVPVRVAQ 218
Query: 259 SRFIFSEINQKFPIMPFTARALE----EKRARLGLVECVNHELLQPYPVLHEKPGDYVAH 314
+RF+ ++I +++ +PF R L+ E + +L L + YPVL E VA
Sbjct: 219 ARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGIVAQ 278
Query: 315 IKFTVLLMPNGSDRIT 330
+ T+++ + T
Sbjct: 279 FEHTIIVEKDSVIVTT 294
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 348 bits (895), Expect = e-119
Identities = 80/342 (23%), Positives = 149/342 (43%), Gaps = 33/342 (9%)
Query: 4 DEREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGN 63
D R + + T +++ + AAE +A V S +PG+ ++++ + R
Sbjct: 32 DSRNMEIENFTESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTR----- 86
Query: 64 MYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDE-TVLQEGDMIKIDLGCHIDGFIAVV 122
+K + G+ FP+ +S+N+ H++ ++ VL+E D++KID G H DG I
Sbjct: 87 --TLLKGERNNGIGFPAGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDS 144
Query: 123 AHTHVLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKI--- 179
A T ++ AA E ++ + + D+ I +V ++++ +I
Sbjct: 145 AFTVA-----FKENLEPLLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIGGR 199
Query: 180 ------VEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKP 233
+ + H + QF I G + +V+N DT + + YAV+ +TG G
Sbjct: 200 MWPIRPISDLHGHSISQFRIHGGISIPAVNNRDT----TRIKGDSFYAVETFATTGKGSI 255
Query: 234 KLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVEC 292
D + + K+ L K ++ + +PF+ R L+ + G ++
Sbjct: 256 D--DRPPCSHFVLNTYKSRKLFNKDLIKVYEFVKDSLGTLPFSPRHLDYYGLVKGGSLKS 313
Query: 293 VN----HELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRIT 330
VN LL PYP L++ G VA + TV L +G + +T
Sbjct: 314 VNLLTMMGLLTPYPPLNDIDGCKVAQFEHTVYLSEHGKEVLT 355
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 341 bits (877), Expect = e-114
Identities = 90/335 (26%), Positives = 155/335 (46%), Gaps = 20/335 (5%)
Query: 4 DEREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGN 63
E+K LD S E+ ++ AAE + + V+S KPG+ ++++CEK + R+
Sbjct: 151 TSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIK- 209
Query: 64 MYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVA 123
+ + G+AFP+ S+NN H++P A D TVLQ D+ KID G HI G I A
Sbjct: 210 -----ENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA 264
Query: 124 HTHVLQD--GPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEA--IQKVAAAHDCKI 179
T + D A + +RL G+ ++V E+ ++ + K
Sbjct: 265 FTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKP 324
Query: 180 VEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEK 239
+ + H + Q+ I K V V + EE EVYA++ STG G D+
Sbjct: 325 IRNLNGHSIGQYRIHAGKTVPIVKGG----EATRMEEGEVYAIETFGSTGKGVVH--DDM 378
Query: 240 QTTIYKRAVD-KNYHLKMKASRFIFSEINQKFPIMPFTARALE---EKRARLGLVECVNH 295
+ + Y + D + +++ ++ + + IN+ F + F R L+ E + + L +
Sbjct: 379 ECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDL 438
Query: 296 ELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRIT 330
++ PYP L + G Y A + T+LL P + ++
Sbjct: 439 GIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEVVS 473
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 79.9 bits (198), Expect = 4e-17
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 14/171 (8%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGN-MYKNVKKKIE 73
+P + +A I AL V K GV ++L + +S IRE +
Sbjct: 36 TPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGY----- 90
Query: 74 RGVAFPS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDG 131
G FP+ C SVN+ + H P S VL +GD++ ID G +DG+ A T + G
Sbjct: 91 HG--FPASICSSVNDQVVHGIP--SATAVLADGDLVSIDCGAILDGWHGDSAWTFAV--G 144
Query: 132 PVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEG 182
V + A + E + + PG + DV+ AI+ A + +
Sbjct: 145 TVIPSDEALSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRA 195
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 76.4 bits (189), Expect = 4e-16
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 14/170 (8%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGN-MYKNVKKKIE 73
+P + K K A + AL+ V PG D+ ++ +K
Sbjct: 18 TPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYG---- 73
Query: 74 RGVAFPS--CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDG 131
+ CVSVN + H P E V +EGD++ +D+G G A T+++ G
Sbjct: 74 ---GYKYATCVSVNEEVVHGLP--LKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV--G 126
Query: 132 PVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVE 181
R +++ E A+++++PG + DV+ IQ+ + ++
Sbjct: 127 ETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIR 176
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 75.6 bits (187), Expect = 7e-16
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 24/176 (13%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGV---KIVDLCEKGDSFIREQTGN----MY 65
+ + E + K I K + + KPG+ ++ ++ ++ E
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKE---LFEEYGAISAPIHD 59
Query: 66 KNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 125
+N + C+SVN + H P + V++EGD++ ID+ +G+ A +
Sbjct: 60 ENFPGQT--------CISVNEEVAHGIP---SKRVIREGDLVNIDVSALKNGYYADTGIS 108
Query: 126 HVLQDGPVTGRAAD-VIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIV 180
V+ G V A A E A+ V+PG K ++ +A+ A +D K++
Sbjct: 109 FVV--GESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVI 162
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 75.3 bits (186), Expect = 2e-15
Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 25/188 (13%)
Query: 2 SDDEREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGV---KIVDLCEKGDSFIR 58
+E E + +PEV+ K + A IA AL PGV ++ + + ++
Sbjct: 30 KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHE---YLV 86
Query: 59 EQTG-----NMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGC 113
+ YK K C S+N +CH P D TV+ +GD++ ID+
Sbjct: 87 DNGAYPSTLG-YKGFPKSC--------CTSLNEVICHGIP---DSTVITDGDIVNIDVTA 134
Query: 114 HIDGFIAVVAHTHVLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAA 173
+I G T G V ++ A A+ V+PG+ + I+ A
Sbjct: 135 YIGGVHGDTNATFPA--GDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYAN 192
Query: 174 AHDCKIVE 181
+V
Sbjct: 193 RFGYNVVR 200
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 74.9 bits (185), Expect = 2e-15
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 17/172 (9%)
Query: 13 LTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGN----MYKNV 68
L SP + + E+ + + + KPG+ D+ FI G Y+
Sbjct: 4 LKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGY 63
Query: 69 KKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVL 128
K C S+N+ +CH P + VL++GD+IK+D+ + G I+ ++V+
Sbjct: 64 KYAT--------CCSINDEICHGFP---RKKVLKDGDLIKVDMCVDLKGAISDSCWSYVV 112
Query: 129 QDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIV 180
G T ++ A + + + G + D+ AIQ +V
Sbjct: 113 --GESTPEIDRLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVV 162
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 75.4 bits (186), Expect = 2e-15
Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 23/186 (12%)
Query: 3 DDEREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGV---KIVDLCEKGDSFIRE 59
+ ++ L S E + + +A + L + KPGV +I
Sbjct: 65 QALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHL---ACIA 121
Query: 60 QTGN----MYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHI 115
+ Y N K C SVN +CH P D LQEGD++ +D+ +
Sbjct: 122 RNCYPSPLNYYNFPKSC--------CTSVNEVICHGIP---DRRPLQEGDIVNVDITLYR 170
Query: 116 DGFIAVVAHTHVLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAH 175
+G+ + T + G V A ++ A+ V+PG + +++ IQK A A+
Sbjct: 171 NGYHGDLNETFFV--GEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQAN 228
Query: 176 DCKIVE 181
+V
Sbjct: 229 GFSVVR 234
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 73.3 bits (181), Expect = 6e-15
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGV---KIVDLCEKGDSFIREQTGN----MYKN 67
+ + K ++A ++A + L + KP V + DLC FI YK
Sbjct: 10 TEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHN---FITSHNAIPAPLNYKG 66
Query: 68 VKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHV 127
K I C S+N+ +CH P ++ L+ GD++ ID+ +DG+ + +
Sbjct: 67 FPKSI--------CTSINHVVCHGIP---NDKPLKNGDIVNIDVTVILDGWYGDTSRMYY 115
Query: 128 LQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIV 180
+ G V + +I A + +VRPG K D+ AIQ A H+ +V
Sbjct: 116 V--GDVAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVV 166
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 72.2 bits (178), Expect = 1e-14
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 23/174 (13%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGV---KIVDLCEKGDSFIREQTGNM-----YK 66
+PE + K + A +A + L+++ KPGV ++ +C +I + + Y
Sbjct: 6 TPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICND---YIVNEQHAVSACLGYH 62
Query: 67 NVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTH 126
K + C+S+N +CH P D +L++GD++ ID+ DGF +
Sbjct: 63 GYPKSV--------CISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 112
Query: 127 VLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIV 180
++ G T + + +ALR+V+PG +++ AIQK A +V
Sbjct: 113 IV--GKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 164
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 71.2 bits (175), Expect = 8e-14
Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 24/185 (12%)
Query: 6 REEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGV---KIVDLCEKGDSFIREQTG 62
+ + ++ + + E + + + A + K L + PGV +I + FI +
Sbjct: 96 KRKSDIYVNNEEEIQRIREACILGRKTLDYAHTLVSPGVTTDEIDRKVHE---FIIKNNA 152
Query: 63 -----NMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDG 117
N Y K C SVN +CH P D L+ GD+I ID+ G
Sbjct: 153 YPSTLN-YYKFPKSC--------CTSVNEIVCHGIP---DYRPLKSGDIINIDISVFYKG 200
Query: 118 FIAVVAHT-HVLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHD 176
+ + T V V +++ + A++ +PG K++ I + +
Sbjct: 201 VHSDLNETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKN 260
Query: 177 CKIVE 181
+V
Sbjct: 261 FSVVR 265
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 4e-10
Identities = 69/436 (15%), Positives = 132/436 (30%), Gaps = 170/436 (38%)
Query: 4 DEREEKELDLTSPEVVTKYKSAAEIANKALQ------LVVSECKPGVKIVDLCEKG---- 53
+ + L + + E++ Y +A +A + L + + ++V + G
Sbjct: 109 LQENDTTL-VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF--GGQGN 165
Query: 54 -DSFIRE-QTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASD-ETVLQEGDMIKID 110
D + E + ++Y+ + TL D E V +G ++
Sbjct: 166 TDDYFEELR--DLYQ-----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG----LN 214
Query: 111 LGCHIDG------------------FIAVV--AH----THVLQDGP---------VTGRA 137
+ ++ I V+ AH +L P TG +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 138 ADVIAAA-----------NTAAEVALRL-----VR-----PGKKNKDVTEAIQKVAAAHD 176
++ A + A+ + VR P N + +I + + ++
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP---NTSLPPSILEDSLENN 331
Query: 177 CKI------VEGVLSHQLKQFVIDGNK-------VVLSVSN-PDTRVDDAEFEENEVYAV 222
+ + + Q++ +V N V +S+ N V
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV------------- 378
Query: 223 DIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKA------SRFIFSE----INQKF-P 271
V+ G P+ L ++ K KA SR FSE + +F P
Sbjct: 379 --VS----GPPQSL---------YGLNLTLR-KAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 272 IM-PFTARALEEKRARLGLVECVNH-ELLQPYPVLHEKPGDYVA-HIKFTV--LLMP--- 323
+ PF H LL P D V ++ F + +P
Sbjct: 423 VASPF-------------------HSHLLV--PASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 324 --NGSD-RITSHTLQE 336
+GSD R+ S ++ E
Sbjct: 462 TFDGSDLRVLSGSISE 477
Score = 33.9 bits (77), Expect = 0.097
Identities = 43/227 (18%), Positives = 66/227 (29%), Gaps = 94/227 (41%)
Query: 1 M---SDDERE--EKELDLTS---PEVVTKYKSAAEIA--NKALQLVVSECKPGVKIVDLC 50
M S+ +E + ++ T+ P EI+ N A LVVS G L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPA-----GKQVEISLVNGAKNLVVS----G-PPQSLY 387
Query: 51 EKG-DSFIREQTGNMYKNVKKKI---ERGVAF-----PSCVSVNNTLCHF-SPLASDETV 100
G + +R+ + + +I ER + F P V+ F S L +
Sbjct: 388 --GLNLTLRKAKAPSGLD-QSRIPFSERKLKFSNRFLP--VAS-----PFHSHLLVPASD 437
Query: 101 LQEGDMIKI-------DLGCHI----DG------------------FIAVV--------A 123
L D++K D+ + DG V
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 124 HTHVLQDGP-------------VTGRAADVIAAA----NTAAEVALR 153
TH+L GP G VI A N + +
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 59.6 bits (145), Expect = 5e-10
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 12/156 (7%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCV 82
+ A IA+ VV V ++ + + +++V + +
Sbjct: 167 RHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDV-----ELMDTWTWF 221
Query: 83 S--VNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADV 140
+N H + +GD++ ++ I G+ + T L + +
Sbjct: 222 QSGINTDGAHNPV---TTRKVNKGDILSLNCFPMIAGYYTALERTLFL--DHCSDDHLRL 276
Query: 141 IAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHD 176
E L+L++PG + D+ + ++ HD
Sbjct: 277 WQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHD 312
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 58.1 bits (141), Expect = 2e-09
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 10/163 (6%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIER 74
S E + A I++ + GV ++ + Z + V E
Sbjct: 159 SSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPYV----EL 214
Query: 75 GVAFPSCVSVNNT-LCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPV 133
+ S NT H + V+Z GD++ ++ I G+ + T L V
Sbjct: 215 MDTWIWFQSGINTDGAH---NPVTBRVVZRGDILSLNCFPMIFGYYTALERTLFL--ZZV 269
Query: 134 TGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHD 176
+ ++ L L++PG + KD+ + + D
Sbjct: 270 BDASLZIWZKNTAVHRRGLZLIKPGARCKDIASELNBMYRZWD 312
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 9e-09
Identities = 40/213 (18%), Positives = 66/213 (30%), Gaps = 56/213 (26%)
Query: 160 KNKDVTEA-IQKVAAAHDCKIVEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEENE 218
+ KD+ DCK V+ D K +LS +D ++
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQ------------DMPKSILS----KEEIDHIIMSKDA 60
Query: 219 VYAVDIVTSTGDGKPKLLDEKQTTIYKRAVD----KNYHLKMKASRFIFSEINQKFPIMP 274
V + T L KQ + ++ V+ NY +F+ S I + P
Sbjct: 61 VSGTLRLFWT-------LLSKQEEMVQKFVEEVLRINY-------KFLMSPI-KTEQRQP 105
Query: 275 -FTARALEEKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSH- 332
R E+R RL ++++ Y V +P ++ LL + +
Sbjct: 106 SMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQP---YLKLR-QALLELRPAKNVLIDG 157
Query: 333 ---------TLQEIQSTKTIDDPEIKA-WLALG 355
L S K + K WL L
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 55.4 bits (133), Expect = 1e-08
Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 9/154 (5%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIER 74
P+ + + A+ A++ + + V CE + ++ ++
Sbjct: 231 GPDEIRAMRCASHACEVAVRKMEDFARSKVGDGVTCE------NDIWAILHSENVRRGGE 284
Query: 75 GVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHID-GFIAVVAHTHVLQDGPV 133
+ S + F V Q ++I D G ++ + + D
Sbjct: 285 WIETRLLASGPRSNPWFQE--CGPRVCQRNEIISFDTDLVGAYGICTDISRSWWIGDQKP 342
Query: 134 TGRAADVIAAANTAAEVALRLVRPGKKNKDVTEA 167
+ + +++PG +++
Sbjct: 343 RADMIYAMQHGVEHIRTNMEMLKPGVMIPELSAN 376
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 50.7 bits (122), Expect = 3e-07
Identities = 28/144 (19%), Positives = 58/144 (40%), Gaps = 18/144 (12%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCV 82
+ A EIA+KA+ + E G K ++ K + ++ AF + +
Sbjct: 137 EKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGAE-----------KPAFDTII 185
Query: 83 S--VNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADV 140
+ + L H + ++ GD++ IDLG + + + T V+ G + ++
Sbjct: 186 ASGYRSALPHGVA---SDKRIERGDLVVIDLGALYQHYNSDITRTIVV--GSPNEKQKEI 240
Query: 141 IAAANTAAEVALRLVRPGKKNKDV 164
A + A+ +PG K++
Sbjct: 241 YEIVLEAQKKAVESAKPGITAKEL 264
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 49.9 bits (120), Expect = 6e-07
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCV 82
+ A+ IA+K + +++ G+K +L K + IRE + G+AF V
Sbjct: 141 EHASRIADKVFEEILTWDLIGMKERELALKIELLIRELS------------DGIAFEPIV 188
Query: 83 S--VNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADV 140
+ N H P E +++GD+I +D G G+ + + T L G + R +
Sbjct: 189 ASGENAANPHHEP---GERKIRKGDIIILDYGARWKGYCSDITRTIGL--GELDERLVKI 243
Query: 141 IAAANTAAEVALRLVRPGKKNKDV 164
A E A + VR G K KDV
Sbjct: 244 YEVVKDAQESAFKAVREGIKAKDV 267
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 49.1 bits (118), Expect = 1e-06
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 18/144 (12%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCV 82
K A EI+ +A V + + G+ ++ + +R++ GVAF + V
Sbjct: 143 KQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAE-----------GVAFDTIV 191
Query: 83 S--VNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADV 140
+ + L H + V++ GD+I ID G + + A + + G + +V
Sbjct: 192 ASGCRSALPHGKA---SDKVVERGDVIVIDFGATYENYCADITRVVSI--GEPSDEVKEV 246
Query: 141 IAAANTAAEVALRLVRPGKKNKDV 164
+ A E AL++ + G K +
Sbjct: 247 HSIVLEAQERALKIAKAGVTGKLL 270
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 49.1 bits (118), Expect = 1e-06
Identities = 28/144 (19%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCV 82
K AA+IA+ A + ++S +PGV +++ + + F+R+Q +F V
Sbjct: 140 KEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGAT-----------SSSFDIIV 188
Query: 83 S--VNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADV 140
+ + + L H E V++ GD + +D G + G+ + + T + G + + ++
Sbjct: 189 ASGLRSALPHGVA---SEKVIETGDFVTLDFGAYYKGYCSDITRTIAV--GEPSDKLKEI 243
Query: 141 IAAANTAAEVALRLVRPGKKNKDV 164
A + ++ G ++
Sbjct: 244 YNIVLEAQLRGVNGIKAGLTGREA 267
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 46.5 bits (111), Expect = 8e-06
Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 18/144 (12%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCV 82
A ++ V + PG + I + + VAF
Sbjct: 160 AKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHS-----------AVAFVIVG 208
Query: 83 S-VNNTLCHFSPLASDETVLQEGDMIKIDLGCHID-GFIAVVAHTHVLQDGPVTGRAADV 140
S + H + LQ GD++ +D+G + G+ + T+ + G + A
Sbjct: 209 SGPHGADPHHGY---SDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSI--GDPSPDVAQQ 263
Query: 141 IAAANTAAEVALRLVRPGKKNKDV 164
+A A A+ VRPG V
Sbjct: 264 YSALQRAQRAAVDAVRPGVTAAQV 287
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 43.1 bits (102), Expect = 1e-04
Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 28/167 (16%)
Query: 25 AAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSV 84
A ++A + + G E Y ++ + V + S V++
Sbjct: 171 ANKLAVAGHKAAEQAFREGKS-----EF-------DINLAYAAASRQGDNDVPYTSIVAL 218
Query: 85 NNTLC--HFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR-----A 137
N H+ D +E ID G + G+ A + T+ G
Sbjct: 219 NEHASILHYM--QCDTVAPKESRSFLIDAGANYHGYAADITRTY-----AQEGVHNSAMF 271
Query: 138 ADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAH--DCKIVEG 182
D+I A + + ++PG D+ A D +V
Sbjct: 272 RDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNL 318
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 42.4 bits (100), Expect = 2e-04
Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 25/164 (15%)
Query: 25 AAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSV 84
A +IA + + G E + Y + E + + V++
Sbjct: 171 ANKIAVQGHKAARDAFFQGKS-----EF-------EIQQAYLLATQHSENDNPYGNIVAL 218
Query: 85 NNTLC--HFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR--AADV 140
N H++ D ID G + +G+ A + T+ TG A++
Sbjct: 219 NENCAILHYT--HFDRVAPATHRSFLIDAGANFNGYAADITRTY-----DFTGEGEFAEL 271
Query: 141 IAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAH--DCKIVEG 182
+A + + PGK ++ + A D IV+
Sbjct: 272 VATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDL 315
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 40.3 bits (94), Expect = 8e-04
Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 27/182 (14%)
Query: 8 EKELDLTSPEVVTKYKSAAEIANKALQLVVSEC-----KPGVKI--VDLCEKGDSFIREQ 60
E+EL K A+ ++ + + G KI ++ +S I +
Sbjct: 180 EQELANI--------KGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNE 231
Query: 61 TGNMYKNVKKKI----ERGVAFPSCVS--VNNTLCHFSPLASDETVLQEGDMIKIDLGCH 114
K++K + + + + L + + GD++ LG
Sbjct: 232 AFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAI---TDDRNLHGDVVLCSLGFR 288
Query: 115 IDGFIAVVAHTHVLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAA 174
+ + V T++ P + + R G D+ I + A
Sbjct: 289 YKSYCSNVGRTYLF--DP-DSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRA 345
Query: 175 HD 176
Sbjct: 346 KR 347
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 37.0 bits (86), Expect = 0.010
Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 24/169 (14%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPS-C 81
+ +I+++A + V+ K G+K +L + + + G R ++ C
Sbjct: 197 RYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGG----------MRHSSYTCIC 246
Query: 82 VSVNN--TLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR--- 136
S N L + A ++ +Q GDM D+G F + + + P G+
Sbjct: 247 GSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSF-----PANGKFTA 301
Query: 137 -AADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAH--DCKIVEG 182
V A ++ + ++PG D+ ++ I+ G
Sbjct: 302 DQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSG 350
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 36.4 bits (85), Expect = 0.015
Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 31/162 (19%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCV 82
K A + + V+ K + E E +K + AF + +
Sbjct: 181 KEAIAVTKDGIYNVLKHAKADMM-----E------YELEAQFDFTLKSSGIKHHAFNTIL 229
Query: 83 S--VNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR--AA 138
+ N T+ H+ ++ +Q GD++ +DLG D + A +++T P G +
Sbjct: 230 ASGKNATVLHYED---NDAQIQNGDLVLLDLGAQKDYYNADISYTF-----PANGTFSSR 281
Query: 139 -----DVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAH 175
+++ A +++PG K + E +KV A
Sbjct: 282 QKQIYNIVLNALKE---TTEIIKPGLKFAALNEHAKKVLAEG 320
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 34.6 bits (79), Expect = 0.047
Identities = 20/167 (11%), Positives = 46/167 (27%), Gaps = 21/167 (12%)
Query: 23 KSAAEIANKALQLVVSECKPGV---------KIVDLCEKGDSFIREQTGNMYKNVKKKIE 73
+++ ++K + L+ +E V K+ D E ++
Sbjct: 187 SVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDLSALCPP 246
Query: 74 RG--------VAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 125
+ + S L I G + + + + T
Sbjct: 247 NYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCGIRYNNYCSNITRT 306
Query: 126 HVLQDGPVTGRAA-DVIAAANTAAEVALRLVRPGKKNKDVTEAIQKV 171
L D D + +++PG+ K+V E++ +
Sbjct: 307 -FLIDPSEEMANNYDFLLTLQKEI--VTNILKPGRTPKEVYESVIEY 350
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 33.7 bits (78), Expect = 0.088
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 31/162 (19%)
Query: 23 KSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCV 82
+ A EI A + +C+PG+ E G ++ + R ++ + V
Sbjct: 185 RRAGEITAMAHTRAMEKCRPGMF-----E------YHLEGEIHHEFNRHGARYPSYNTIV 233
Query: 83 -SVNNTLC-HFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR--AA 138
S N H++ +E +++GD++ ID GC G+ + T PV G+ A
Sbjct: 234 GSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTF-----PVNGKFTQA 285
Query: 139 -----DVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAH 175
D++ + +LRL RPG +VT + ++ +
Sbjct: 286 QREIYDIVLESLET---SLRLYRPGTSILEVTGEVVRIMVSG 324
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis,
leucine biosynthesis, structural genomics, NPPSFA; 2.10A
{Methanocaldococcus jannaschii}
Length = 170
Score = 28.8 bits (65), Expect = 1.9
Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 93 PLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADVIAA 143
P+ ++ +++GD+++IDL I + ++ G +++AA
Sbjct: 102 PIIANTDEIKDGDIVEIDLD---KEEIVITNKNKTIKCETPKGLEREILAA 149
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 28.1 bits (63), Expect = 5.9
Identities = 16/80 (20%), Positives = 28/80 (35%)
Query: 121 VVAHTHVLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIV 180
V+++ VL+D G +I + A+ L +PG+
Sbjct: 480 VLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQ 539
Query: 181 EGVLSHQLKQFVIDGNKVVL 200
G LS Q Q ++V+
Sbjct: 540 AGGLSPQGMQIPRSPRQIVM 559
>3r90_A Malignant T cell-amplified sequence 1; structural genomics
consortium, surface entropy reduction, S binding
protein; 1.70A {Homo sapiens}
Length = 188
Score = 27.2 bits (60), Expect = 6.5
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 245 KRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALEEKRARLGLVECVNH 295
K V LK + I +++ ++FP + + K+ + +V C H
Sbjct: 8 KENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEH 58
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 27.5 bits (61), Expect = 7.9
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 127 VLQDGPVTGRAADV---IAAANTAAEVALRLVR 156
+ RA D+ I+ A V L +
Sbjct: 344 LQAKDTYARRAQDLSREISGMPLPATVVTALEQ 376
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.369
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,066,521
Number of extensions: 387228
Number of successful extensions: 906
Number of sequences better than 10.0: 1
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 50
Length of query: 394
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,021,377
Effective search space: 1198370346
Effective search space used: 1198370346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.1 bits)