RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016183
(394 letters)
>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 89.8 bits (223), Expect = 4e-23
Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 237 DEKQTTIYKRAVD-KNYHLKMKASRFIFSEINQKFPIMPFTARALE---EKRARLGLVEC 292
D+ + + Y + D + +++ ++ + + IN+ F + F R L+ E + + L
Sbjct: 2 DDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNL 61
Query: 293 VNHELLQPYPVL 304
+ ++ PYP L
Sbjct: 62 CDLGIVDPYPPL 73
>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 77
Score = 89.8 bits (223), Expect = 4e-23
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 234 KLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE----EKRARLGL 289
++++ T IY ++ +++ +RF+ ++I +++ +PF R L+ E + +L L
Sbjct: 2 QVIEVPPTLIYM--YVRDVPVRVAQARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKLAL 59
Query: 290 VECVNHELLQPYPVLHE 306
+ YPVL E
Sbjct: 60 KTLEKAGAIYGYPVLKE 76
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 94.2 bits (233), Expect = 2e-22
Identities = 69/237 (29%), Positives = 105/237 (44%), Gaps = 24/237 (10%)
Query: 7 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYK 66
E+K LD S E+ ++ AAE + + V+S KPG+ ++++CEK + R+
Sbjct: 45 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKEN-- 102
Query: 67 NVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTH 126
+ G+AFP+ S+NN H++P A D TVLQ D+ KID G HI G I A
Sbjct: 103 ----GLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAF-- 156
Query: 127 VLQDGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKV---------AAAHDC 177
+ ++ A A ++ + DV EAIQ+V +
Sbjct: 157 ---TVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQV 213
Query: 178 KIVEGVLSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPK 234
K + + H + Q+ I K V V + EE EVYA++ STG G
Sbjct: 214 KPIRNLNGHSIGQYRIHAGKTVPIVKGGEATR----MEEGEVYAIETFGSTGKGVVD 266
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 86.5 bits (213), Expect = 5e-20
Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 11/227 (4%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIER 74
+PE + K + A +A + L+++ KPGV +L + +I + +
Sbjct: 5 TPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSAC---LGYH 61
Query: 75 GVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVT 134
G C+S+N +CH P D +L++GD++ ID+ DGF + G T
Sbjct: 62 GYPKSVCISINEVVCHGIP--DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF--IVGKPT 117
Query: 135 GRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVID 194
+ + +ALR+V+PG +++ AIQK A +V H + + +
Sbjct: 118 IMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHE 177
Query: 195 GNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQT 241
V + D+R + + + ++ + + G + + + + T
Sbjct: 178 E----PQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWT 220
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 72.7 bits (177), Expect = 3e-15
Identities = 45/231 (19%), Positives = 92/231 (39%), Gaps = 12/231 (5%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIER 74
+P + K K A + AL+ V PG D+ ++
Sbjct: 6 TPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGY-- 63
Query: 75 GVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVT 134
+ +CVSVN + H P E V +EGD++ +D+G G A T+++ G
Sbjct: 64 --KYATCVSVNEEVVHGLP--LKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV--GETD 117
Query: 135 GRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVID 194
R +++ E A+++++PG + DV+ IQ+ + ++ + H + + + +
Sbjct: 118 ERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHE 177
Query: 195 GNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYK 245
+ N T + A++ + S GD + + ++ T +
Sbjct: 178 D----PQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTV 224
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 58.9 bits (141), Expect = 1e-10
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 20/209 (9%)
Query: 21 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPS 80
K A EIA K + + +PG+ +++L E + I E G FP
Sbjct: 5 KLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------------FPV 52
Query: 81 CVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGRAADV 140
+S+N H++P D TVL+EGD +KID+G HIDGFIA A T + ++
Sbjct: 53 NLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGM-----EEDEL 107
Query: 141 IAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVIDGNKVVL 200
+ AA A A+ + R G + K++ +AI+ K + + H+++++ + +
Sbjct: 108 MEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIP 167
Query: 201 SVSNPDTRVDDAEFEENEVYAVDIVTSTG 229
++ P +E +V+A++ + G
Sbjct: 168 NIYRPHDNY---VLKEGDVFAIEPFATIG 193
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 48.6 bits (114), Expect = 4e-07
Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 11/231 (4%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIER 74
+ E + K I K + + KPG+ +L E +
Sbjct: 5 TEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDE---- 60
Query: 75 GVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVT 134
+ + + + V++EGD++ ID+ +G+ A + V
Sbjct: 61 ---NFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFV-VGESDD 116
Query: 135 GRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFVID 194
V A A E A+ V+PG K ++ +A+ A +D K+++ + H + + +
Sbjct: 117 PMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHE 176
Query: 195 GNKVVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYK 245
V N D E V A++ S+ +
Sbjct: 177 APAH---VLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETS 224
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 45.1 bits (105), Expect = 6e-06
Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 13/165 (7%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIER 74
SPE + + A EI A + +C+PG+ L + G Y + +
Sbjct: 1 SPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRH-GARYPSYNTIVGS 59
Query: 75 GVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVT 134
G N +GD++ ID GC G+ + T + +G T
Sbjct: 60 GENGCILHYTENECEMR-----------DGDLVLIDAGCEYKGYAGDITRTFPV-NGKFT 107
Query: 135 GRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKI 179
++ + E +LRL RPG +VT + ++ + K+
Sbjct: 108 QAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKL 152
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 41.1 bits (95), Expect = 9e-05
Identities = 23/164 (14%), Positives = 57/164 (34%), Gaps = 14/164 (8%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIER 74
+ E + + A EIA+KA+ + E G + ++ K + ++
Sbjct: 2 TKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIASG 61
Query: 75 GVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVT 134
+ ++ D++ IDLG + + + + T V+ G
Sbjct: 62 HRSALPHGVASDKRIERG------------DLVVIDLGALYNHYNSDITRTIVV--GSPN 107
Query: 135 GRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCK 178
+ ++ A + A+ +PG K++ +++ +
Sbjct: 108 EKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYG 151
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 41.2 bits (95), Expect = 9e-05
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 6/112 (5%)
Query: 15 SPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIER 74
S E + A IA+ VV V ++ + + +++V
Sbjct: 4 SAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDV---ELM 60
Query: 75 GVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTH 126
+N H + +GD++ ++ I G+ + T
Sbjct: 61 DTWTWFQSGINTDGAHNPV---TTRKVNKGDILSLNCFPMIAGYYTALERTL 109
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain
3 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 27.4 bits (60), Expect = 2.0
Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 132 PVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTE--------AIQKVAAAHDCKIVEGV 183
P A V+ A +TA + A +R G + + A+ + + E +
Sbjct: 42 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFL 101
Query: 184 LSHQLKQFVIDGNKVVLSVSNPDTRVDDAEFEENE----VYAVDIV 225
++ ++ G ++V + + ++ E+E D+V
Sbjct: 102 PFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVV 147
>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
{Clostridium thermocellum [TaxId: 1515]}
Length = 642
Score = 27.9 bits (62), Expect = 2.9
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 133 VTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAHDCKIVEGVLSHQLKQFV 192
VT D+ A + A +A + + + +AA ++V +
Sbjct: 487 VTSYGTDLGVAGSLANALATYAAATERWEGKLDTKARDMAA----ELVNRAWYNFYCS-- 540
Query: 193 IDGNKVVLSVSNPDTRVDDAEFEENEVY 220
+G V + R D F E EVY
Sbjct: 541 -EG----KGVVTEEARADYKRFFEQEVY 563
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 25.1 bits (54), Expect = 5.2
Identities = 7/49 (14%), Positives = 18/49 (36%)
Query: 88 LCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDGPVTGR 136
L + ++ L GD++ ++ G + + + G + G
Sbjct: 9 LYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGY 57
>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga
maritima [TaxId: 2336]}
Length = 226
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 289 LVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQEIQ-STKTIDDPE 347
L++ N+ ++ + EK Y H+ + + + + S + I T++DPE
Sbjct: 143 LIDEENYGSIENFVERVEKERPYSLHVPYQAFELEYAVEVLRSFRKKGIVIFVWTLNDPE 202
Query: 348 IKAWLALGI 356
I + I
Sbjct: 203 IYRKIRREI 211
>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central
domain {Trypanosoma brucei [TaxId: 5691]}
Length = 132
Score = 25.4 bits (55), Expect = 8.9
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 74 RGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKID 110
RG+ + + + +V +EGD I ID
Sbjct: 83 RGMGKCCVSGCGDMVIRGKSFKLNGSVFREGDYITID 119
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 133
Score = 25.4 bits (55), Expect = 9.2
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 18 VVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTG-NMYKNVKKKIERGV 76
V A K ++++ + + ++ + + + G + V + RG+
Sbjct: 31 VYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSHAAV---VARGM 87
Query: 77 AFPSCVSVNNTLCHFSP--LASDETVLQEGDMIKID 110
+ EGD I +D
Sbjct: 88 GTCCVSGCGEIKINEEAKTFELGGHTFAEGDYISLD 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.369
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,430,525
Number of extensions: 68335
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 24
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)