BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016185
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 263 bits (673), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 224/393 (56%), Gaps = 51/393 (12%)
Query: 20 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
K ++ N L+E +PL+ V FN+ S+ + VFATVG NRVT+Y+C G I LQS
Sbjct: 3 KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 61
Query: 77 YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
YVD D +E+FYT +W + + P L G GIIR+I+ + K +VGHG++INE++
Sbjct: 62 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 136 TQPLKPXXXXXXXXXXXXXXXXXXXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGA 195
P P L V +D ++RLWN+QT + IF G
Sbjct: 122 FHPRDPNLL-------------------------LSVSKDHALRLWNIQTDTLVAIFGGV 156
Query: 196 GGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK--- 248
GHR+EVLS D+ D+ +I SCGMD+++K+W + K +++S+ + P+K
Sbjct: 157 EGHRDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNR 211
Query: 249 -FPTKYVQFPVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGE 301
F ++ + FP F +H NYVDC RWLGD ILSKS +N IV W+P KM++ P E
Sbjct: 212 PFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSE 271
Query: 302 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHA 359
IL ++ +CDIW+++FS DF A+GN+ GK++VW+L+ P L+H
Sbjct: 272 SNVTILGRFDYSQCDIWYMRFSTDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH 331
Query: 360 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392
+ + IRQT+ S D S +++ C+D +IWRWD +
Sbjct: 332 KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 364
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 263 bits (673), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 224/393 (56%), Gaps = 51/393 (12%)
Query: 20 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
K ++ N L+E +PL+ V FN+ S+ + VFATVG NRVT+Y+C G I LQS
Sbjct: 4 KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 62
Query: 77 YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
YVD D +E+FYT +W + + P L G GIIR+I+ + K +VGHG++INE++
Sbjct: 63 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 122
Query: 136 TQPLKPXXXXXXXXXXXXXXXXXXXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGA 195
P P L V +D ++RLWN+QT + IF G
Sbjct: 123 FHPRDPNLL-------------------------LSVSKDHALRLWNIQTDTLVAIFGGV 157
Query: 196 GGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK--- 248
GHR+EVLS D+ D+ +I SCGMD+++K+W + K +++S+ + P+K
Sbjct: 158 EGHRDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNR 212
Query: 249 -FPTKYVQFPVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGE 301
F ++ + FP F +H NYVDC RWLGD ILSKS +N IV W+P KM++ P E
Sbjct: 213 PFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSE 272
Query: 302 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHA 359
IL ++ +CDIW+++FS DF A+GN+ GK++VW+L+ P L+H
Sbjct: 273 SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH 332
Query: 360 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392
+ + IRQT+ S D S +++ C+D +IWRWD +
Sbjct: 333 KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 263 bits (673), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 224/393 (56%), Gaps = 51/393 (12%)
Query: 20 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
K ++ N L+E +PL+ V FN+ S+ + VFATVG NRVT+Y+C G I LQS
Sbjct: 40 KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 98
Query: 77 YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
YVD D +E+FYT +W + + P L G GIIR+I+ + K +VGHG++INE++
Sbjct: 99 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 158
Query: 136 TQPLKPXXXXXXXXXXXXXXXXXXXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGA 195
P P L V +D ++RLWN+QT + IF G
Sbjct: 159 FHPRDPNLL-------------------------LSVSKDHALRLWNIQTDTLVAIFGGV 193
Query: 196 GGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK--- 248
GHR+EVLS D+ D+ +I SCGMD+++K+W + K +++S+ + P+K
Sbjct: 194 EGHRDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNR 248
Query: 249 -FPTKYVQFPVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGE 301
F ++ + FP F +H NYVDC RWLGD ILSKS +N IV W+P KM++ P E
Sbjct: 249 PFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSE 308
Query: 302 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHA 359
IL ++ +CDIW+++FS DF A+GN+ GK++VW+L+ P L+H
Sbjct: 309 SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH 368
Query: 360 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392
+ + IRQT+ S D S +++ C+D +IWRWD +
Sbjct: 369 KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 401
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 224/393 (56%), Gaps = 51/393 (12%)
Query: 20 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
K ++ N L+E +PL+ V FN+ S+ + VFATVG NRVT+Y+C G I LQS
Sbjct: 3 KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 61
Query: 77 YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
YVD D +E+FYT +W + + P L G GIIR+I+ + K +VGHG++INE++
Sbjct: 62 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 136 TQPLKPXXXXXXXXXXXXXXXXXXXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGA 195
P P L V +D ++RLWN+QT + IF G
Sbjct: 122 FHPRDPNLL-------------------------LSVSKDHALRLWNIQTDTLVAIFGGV 156
Query: 196 GGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK--- 248
GHR+EVLS D+ D+ +I SCGMD+++K+W + K +++S+ + P+K
Sbjct: 157 EGHRDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNR 211
Query: 249 -FPTKYVQFPVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGE 301
F ++ + FP F +H NYVDC RWLGD ILSKS +N IV W+P KM++ P E
Sbjct: 212 PFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSE 271
Query: 302 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHA 359
IL ++ +CDIW+++FS DF A+GN+ GK++VW+L+ P L+H
Sbjct: 272 SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH 331
Query: 360 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392
+ + IRQT+ S D S +++ C+D +IWRWD +
Sbjct: 332 KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 364
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 223/390 (57%), Gaps = 51/390 (13%)
Query: 23 YRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQSYVD 79
++ N L+E +PL+ V FN+ S+ + VFATVG NRVT+Y+C G I LQSYVD
Sbjct: 2 FKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD 60
Query: 80 EDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP 138
D +E+FYT +W + + P L G GIIR+I+ + K +VGHG++INE++ P
Sbjct: 61 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 120
Query: 139 LKPXXXXXXXXXXXXXXXXXXXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGH 198
P L V +D ++RLWN+QT + IF G GH
Sbjct: 121 RDPNLL-------------------------LSVSKDHALRLWNIQTDTLVAIFGGVEGH 155
Query: 199 RNEVLSVDFHPSDIY--RIASCGMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FP 250
R+EVLS D+ D+ +I SCGMD+++K+W + K +++S+ + P+K F
Sbjct: 156 RDEVLSADY---DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFI 210
Query: 251 TKYVQFPVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTA 304
++ + FP F +H NYVDC RWLGD ILSKS +N IV W+P KM++ P E
Sbjct: 211 SQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV 270
Query: 305 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSK 362
IL ++ +CDIW+++FS DF A+GN+ GK++VW+L+ P L+H +
Sbjct: 271 TILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCG 330
Query: 363 SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392
+ IRQT+ S D S +++ C+D +IWRWD +
Sbjct: 331 AAIRQTSFSRDSSILIAVCDDASIWRWDRL 360
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 42/241 (17%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234
D S+RLWN+Q G C F GH +VLSV F P D +I S G DN +++W++K
Sbjct: 88 DHSLRLWNLQNGQCQYKFL---GHTKDVLSVAFSP-DNRQIVSGGRDNALRVWNVKGECM 143
Query: 235 YVEKSFTWTDLPS--KFPTKYVQFPVFIAS---------------------VHSNYVDCN 271
+ TD S +F + + PV ++ H+NYV
Sbjct: 144 HTLSRGAHTDWVSCVRF-SPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Query: 272 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 331
D L S D + V ++ + + GE +++ P+ + I FS + ++ A
Sbjct: 203 TVSPDGSLCASSDKDGV---ARLWDLTKGEALSEMAAGAPINQ-----ICFSPNRYWMCA 254
Query: 332 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ---TAMSYDGSTILSCCEDGAIWR 388
A E I +++L++ ++ H SK + + A S DGST+ S D I
Sbjct: 255 AT---EKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRV 311
Query: 389 W 389
W
Sbjct: 312 W 312
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 64 QCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI-----------PFLVAGGINGIIRV 112
Q + GG AL+ + K E +T+S + D + P +V+GG + +++V
Sbjct: 123 QIVSGGRDNALRVW--NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 113 IDVSNEKLHKSFVGHGDSINEIRTQP 138
D++ +L GH + + + P
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSP 206
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 170 LRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 229
L +D+++++W+V TG+C++ GH N V V FH + I SC D T+++W
Sbjct: 312 LSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDY 367
Query: 230 K 230
K
Sbjct: 368 K 368
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 174 QDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 227
+D+++++W VQTG C+ F GHR V V + D IASC D TV++W
Sbjct: 212 RDKTIKMWEVQTGYCVKTFT---GHREWVRMVRPN-QDGTLIASCSNDQTVRVW 261
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 174 QDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 232
+D ++++W+ +TG G H + V + F S +ASC D T+K+W + F
Sbjct: 128 EDATIKVWDYETGDFERTLKG---HTDSVQDISFDHSGKL-LASCSADMTIKLWDFQGF 182
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 102/274 (37%), Gaps = 43/274 (15%)
Query: 52 FATVGGNRVT-VYQCLEGGVIAAL--QSYVDEDKEE---------SFYTVSWACNVDGIP 99
+ G N+ T VY+ +G ++A L S ++D E Y S + DG
Sbjct: 78 YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-K 136
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEI---------------RTQPLKPXXX 144
FL G + +IR+ D+ N K+ GH I + RT +
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 145 XXXXXXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIF----AGAGGHR 199
+ G D +VR+W+ +TG + GH+
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256
Query: 200 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 259
+ V SV F D + S +D +VK+W+++ KS + T Y+ F
Sbjct: 257 DSVYSVVF-TRDGQSVVSGSLDRSVKLWNLQNA---NNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 260 IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 293
+ SV + D ++ILS S D ++ W+ K
Sbjct: 313 VLSVATTQND------EYILSGSKDRGVLFWDKK 340
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 107/276 (38%), Gaps = 64/276 (23%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 74 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 120
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG+C+ H + V +V F
Sbjct: 121 -----------------QSNLIVSGSFDESVRIWDVKTGMCLKTLP---AHSDPVSAVHF 160
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 161 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 206
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN++ LW+ K + T +KY + W +
Sbjct: 207 -------GKYILAATLDNDLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 358
S D N I N + K V +LQ V+I+ H
Sbjct: 259 SED---NMVYIWNLQTKEIVQKLQGHTDVVISTACH 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 38/222 (17%)
Query: 170 LRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 229
+ D+++++W+V +G C+ GH N V +F+P I S D +V+IW +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDV 139
Query: 230 KEFWTYVEKSFTWTDLPSKF-PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIV 288
K LP+ P V F NR G I+S S D
Sbjct: 140 KT-------GMCLKTLPAHSDPVSAVHF--------------NR-DGSLIVSSSYDGLCR 177
Query: 289 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348
+W + + G+ ++ P + F+KFS + Y AA + + K+ W+ S
Sbjct: 178 IW-----DTASGQCLKTLIDDDNPP---VSFVKFSPNGKYILAATLDNDLKL--WDY-SK 226
Query: 349 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390
L H K I G I+S ED ++ W+
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 166 RSNCLRVGQ--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 223
+ NC + D+++RLW+++TG F GH++EV SV F P D +I S G +
Sbjct: 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFV---GHQSEVYSVAFSP-DNRQILSAGAERE 141
Query: 224 VKIWSM 229
+K+W++
Sbjct: 142 IKLWNI 147
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 106/276 (38%), Gaps = 64/276 (23%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 74 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 120
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG+C+ H + V +V F
Sbjct: 121 -----------------QSNLIVSGSFDESVRIWDVKTGMCLKTLP---AHSDPVSAVHF 160
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 161 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 206
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 207 -------GKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 358
S D N I N + K V +LQ V+I+ H
Sbjct: 259 SED---NMVYIWNLQTKEIVQKLQGHTDVVISTACH 291
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 85/222 (38%), Gaps = 38/222 (17%)
Query: 170 LRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 229
+ D+++++W+V +G C+ GH N V +F+P I S D +V+IW +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDV 139
Query: 230 KEFWTYVEKSFTWTDLPSKF-PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIV 288
K LP+ P V F NR G I+S S D
Sbjct: 140 KT-------GMCLKTLPAHSDPVSAVHF--------------NR-DGSLIVSSSYDGLCR 177
Query: 289 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348
+W + + G+ ++ P + F+KFS + Y AA + K+ W+ S
Sbjct: 178 IW-----DTASGQCLKTLIDDDNPP---VSFVKFSPNGKYILAATLDNTLKL--WDY-SK 226
Query: 349 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390
L H K I G I+S ED ++ W+
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 83/216 (38%), Gaps = 44/216 (20%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234
D++V+LWN + G + G H + V V F P D IAS D TVK+W+
Sbjct: 324 DKTVKLWN-RNGQHLQTLTG---HSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG--- 375
Query: 235 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 294
+ ++ T + V+ F G I S S D + LW
Sbjct: 376 QLLQTLT-------GHSSSVRGVAFSPD------------GQTIASASDDKTVKLWNRNG 416
Query: 295 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 354
+ +LQ +W + FS D A+A ++ K++ Q +L
Sbjct: 417 Q----------LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ----LLQT 462
Query: 355 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390
H+ S +R A S DG TI S +D + W+
Sbjct: 463 LTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 83/222 (37%), Gaps = 56/222 (25%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234
D++V+LWN + G + G H + V V F P D IAS D TVK+W+
Sbjct: 242 DKTVKLWN-RNGQLLQTLTG---HSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNG--- 293
Query: 235 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL------GDFILSKSVDNEIV 288
+ +Q + HS+ V W G I S S D +
Sbjct: 294 -----------------QLLQ----TLTGHSSSV----WGVAFSPDGQTIASASDDKTVK 328
Query: 289 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348
LW + LQ +W + FS D A+A ++ K++ Q
Sbjct: 329 LWNRNGQH----------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-- 376
Query: 349 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390
+L H+ S +R A S DG TI S +D + W+
Sbjct: 377 --LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 91/239 (38%), Gaps = 49/239 (20%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM--KEF 232
D++V+LWN + G + G H + V V F P D IAS D TVK+W+ +
Sbjct: 37 DKTVKLWN-RNGQLLQTLTG---HSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLL 91
Query: 233 WTYVEKSFT---------WTDLPSKFPTKYVQF------PVFIASVHSNYVDCNRWL--- 274
T S + + S K V+ + + HS+ V W
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV----WGVAF 147
Query: 275 ---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 331
G I S S D + LW + +LQ +W + FS D A+
Sbjct: 148 SPDGQTIASASDDKTVKLWNRNGQ----------LLQTLTGHSSSVWGVAFSPDGQTIAS 197
Query: 332 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390
A ++ K++ Q +L H+ S +R A S DG TI S +D + W+
Sbjct: 198 ASDDKTVKLWNRNGQ----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 227
D++V+LWN + G + G H + V V F P D IAS D TVK+W
Sbjct: 529 DKTVKLWN-RNGQLLQTLTG---HSSSVWGVAFSP-DGQTIASASSDKTVKLW 576
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 227
D++V+LWN + G + G H + V V F P D IAS D TVK+W
Sbjct: 488 DKTVKLWN-RNGQLLQTLTG---HSSSVRGVAFSP-DGQTIASASDDKTVKLW 535
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 17/116 (14%)
Query: 275 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 334
G I S S D + LW + +LQ +W + FS D A+A
Sbjct: 28 GQTIASASDDKTVKLWNRNGQ----------LLQTLTGHSSSVWGVAFSPDGQTIASASD 77
Query: 335 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390
++ K++ Q +L H+ S +R A S DG TI S +D + W+
Sbjct: 78 DKTVKLWNRNGQ----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWN 126
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 74 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 120
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 121 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 160
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 161 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 206
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 207 -------GKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 259 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 310
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 55/204 (26%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 95 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 141
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 142 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 181
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 182 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 227
Query: 268 VDCNRWLGDFILSKSVDNEIVLWE 291
G +IL+ ++DN + LW+
Sbjct: 228 -------GKYILAATLDNTLKLWD 244
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 55/204 (26%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 93 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 139
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 140 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 179
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 180 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 225
Query: 268 VDCNRWLGDFILSKSVDNEIVLWE 291
G +IL+ ++DN + LW+
Sbjct: 226 -------GKYILAATLDNTLKLWD 242
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 67 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 113
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 114 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 153
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 154 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 199
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 200 -------GKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 252 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 303
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 72 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 118
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 119 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 158
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 159 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 204
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 205 -------GKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 256
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 257 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 77 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 123
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 124 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 163
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 164 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 209
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 210 -------GKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 262 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 313
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 38/217 (17%)
Query: 15 LTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAAL 74
+TP+K+R ++ + + N +D NV A V V+ G V A
Sbjct: 70 VTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA 129
Query: 75 QSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEI 134
++ +ES Y S + DG FL G NG++ + DV ++ ++ GH +
Sbjct: 130 ET------DESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLRTMAGH-----QA 177
Query: 135 RTQPLKPXXXXXXXXXXXXXXXXXXXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAG 194
R L RS + VR+ N Q G
Sbjct: 178 RVGCLS---------------WNRHVLSSGSRSGAI---HHHDVRIANHQIGTL------ 213
Query: 195 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231
GH +EV + + SD ++AS G DN V+IW +
Sbjct: 214 -QGHSSEVCGLAWR-SDGLQLASGGNDNVVQIWDARS 248
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 105/276 (38%), Gaps = 64/276 (23%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 77 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 123
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 124 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 163
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 164 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 209
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 210 -------GKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 358
S D N I N + K V +LQ V+I+ H
Sbjct: 262 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACH 294
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 74 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 120
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 121 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 160
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 161 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 206
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 207 -------GKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 259 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 74 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 120
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 121 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 160
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 161 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 206
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 207 -------GKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 259 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 310
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 105/276 (38%), Gaps = 64/276 (23%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 76 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 122
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 123 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 162
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 163 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 208
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 209 -------GKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 260
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 358
S D N I N + K V +LQ V+I+ H
Sbjct: 261 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACH 293
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 88 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 134
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 135 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 174
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 175 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 220
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 221 -------GKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 272
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 273 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 324
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 77 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 123
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 124 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 163
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 164 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 209
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 210 -------GKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 262 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 313
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 71 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 117
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 118 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 157
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 158 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 203
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 204 -------GKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 256 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 307
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 70 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 116
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 117 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 156
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 157 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 202
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 203 -------GKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 254
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 255 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 306
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 65/296 (21%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P
Sbjct: 71 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---------- 117
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQ-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207
+SN + G DESVR+W+V+TG C+ H + V +V F
Sbjct: 118 -----------------QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHF 157
Query: 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267
+ D I S D +IW K+ D P P +V+F
Sbjct: 158 N-RDGSLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNP---PVSFVKFSPN-------- 203
Query: 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKF 322
G +IL+ ++DN + LW+ K + T +KY + W +
Sbjct: 204 -------GKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378
S D N I N + K V +LQ V+I+ H +++ I A+ D + L
Sbjct: 256 SED---NLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKL 307
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSM-KEF 232
D +VR+W+++ G C +F GH + V +D +I I + DNT+ +W + KE
Sbjct: 182 DRTVRVWDIKKGCCTHVFE---GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE- 237
Query: 233 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLW 290
+ V D P F T + P F+ + H V G+ ++S S DN +++W
Sbjct: 238 -SSVPDHGEEHDYPLVFHTPE-ENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVW 295
Query: 291 E 291
+
Sbjct: 296 D 296
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 28/132 (21%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXXXX 159
+++ G + IRV + + + F H D I I P KP
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY----------------- 111
Query: 160 XXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 219
L D +V+LWN + + GH + V+ V F+P D AS
Sbjct: 112 ---------VLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGC 160
Query: 220 MDNTVKIWSMKE 231
+D TVK+WS+ +
Sbjct: 161 LDRTVKVWSLGQ 172
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 170 LRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 229
+ D ++++W+ QT C+ A GH + V FHP+ + I S D T+KIW+
Sbjct: 202 ITASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNS 257
Query: 230 KEFWTYVEKSF 240
+ VEK+
Sbjct: 258 STY--KVEKTL 266
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 28/132 (21%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXXXX 159
+++ G + IRV + + + F H D I I P KP
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY----------------- 111
Query: 160 XXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 219
L D +V+LWN + + GH + V+ V F+P D AS
Sbjct: 112 ---------VLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGC 160
Query: 220 MDNTVKIWSMKE 231
+D TVK+WS+ +
Sbjct: 161 LDRTVKVWSLGQ 172
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 170 LRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 229
+ D ++++W+ QT C+ A GH + V FHP+ + I S D T+KIW+
Sbjct: 202 ITASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNS 257
Query: 230 KEFWTYVEKSF 240
+ VEK+
Sbjct: 258 STY--KVEKTL 266
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSM-KEF 232
D +VR+W+++ G C +F GH + V +D +I I + DNT+ +W + KE
Sbjct: 182 DRTVRVWDIKKGCCTHVFE---GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE- 237
Query: 233 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLW 290
+ V D P F T + P F+ + H V G+ ++S S DN +++W
Sbjct: 238 -SSVPDHGEEHDYPLVFHTPE-ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 295
Query: 291 E-PKMK 295
+ +MK
Sbjct: 296 DVAQMK 301
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 26/122 (21%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234
D S+R+W+V+TG CI G ++ L+ D + S D+TVKIW
Sbjct: 298 DTSIRVWDVETGNCIHTLTG-----HQSLTSGMELKDNI-LVSGNADSTVKIW------- 344
Query: 235 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 294
D+ + + +Q P + H + V C ++ +F+++ S D + LW+ K
Sbjct: 345 ---------DIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391
Query: 295 KE 296
E
Sbjct: 392 GE 393
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/217 (17%), Positives = 85/217 (39%), Gaps = 45/217 (20%)
Query: 174 QDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 233
+D ++R+W+++TG C+ + GH V V + D R+ S D VK+W +
Sbjct: 217 RDATLRVWDIETGQCLHVLM---GHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPE--- 267
Query: 234 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 293
+ + H+N V ++ G ++S S+D I +W+ +
Sbjct: 268 --------------------TETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 307
Query: 294 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 353
T + + + + + N GN + + +W++++ +
Sbjct: 308 ---------TGNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWDIKTGQCL-- 352
Query: 354 ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390
+ +K T + ++ + +++ +DG + WD
Sbjct: 353 -QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 388
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 230
D ++++WN +TG CI GH + V + H R+ S D T+++W ++
Sbjct: 178 DRTLKVWNAETGECIHTLY---GHTSTVRCMHLHEK---RVVSGSRDATLRVWDIE 227
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 28/132 (21%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXXXX 159
+++ G + IRV + + + F H D I I P KP
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY----------------- 111
Query: 160 XXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 219
L D +V+LWN + + GH + V+ V F+P D AS
Sbjct: 112 ---------VLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGC 160
Query: 220 MDNTVKIWSMKE 231
+D TVK+WS+ +
Sbjct: 161 LDRTVKVWSLGQ 172
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
+ D ++++W+ QT C+ A GH + V FHP+ + I S D T+KIW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Query: 229 MKEFWTYVEKSF 240
+ VEK+
Sbjct: 257 SSTY--KVEKTL 266
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
L D+++RLW+V TG F GH+++V+SVD I S D T+K+W+
Sbjct: 74 ALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKK-ASMIISGSRDKTIKVWT 129
Query: 229 MK 230
+K
Sbjct: 130 IK 131
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
L D+++RLW+V TG F GH+++V+SVD I S D T+K+W+
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKK-ASMIISGSRDKTIKVWT 135
Query: 229 MK 230
+K
Sbjct: 136 IK 137
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
L D+++RLW+V TG F GH+++V+SVD I S D T+K+W+
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKK-ASMIISGSRDKTIKVWT 135
Query: 229 MK 230
+K
Sbjct: 136 IK 137
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
L D+++RLW+V TG F GH+++V+SVD I S D T+K+W+
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKK-ASMIISGSRDKTIKVWT 135
Query: 229 MK 230
+K
Sbjct: 136 IK 137
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
L D+++RLW+V TG F GH+++V+SVD I S D T+K+W+
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKK-ASMIISGSRDKTIKVWT 135
Query: 229 MK 230
+K
Sbjct: 136 IK 137
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 28/131 (21%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXXXXX 160
++ G + IRV + + + F H D I I P KP
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY------------------ 111
Query: 161 XXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 220
L D +V+LWN + + GH + V+ V F+P D AS +
Sbjct: 112 --------VLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 221 DNTVKIWSMKE 231
D TVK+WS+ +
Sbjct: 162 DRTVKVWSLGQ 172
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
+ D ++++W+ QT C+ A GH + V FHP+ + I S D T+KIW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Query: 229 MKEFWTYVEKSF 240
+ VEK+
Sbjct: 257 SSTY--KVEKTL 266
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
L D+++RLW+V TG F GH+++V SVD I S D T+K+W+
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFV---GHKSDVXSVDIDKK-ASXIISGSRDKTIKVWT 135
Query: 229 MK 230
+K
Sbjct: 136 IK 137
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
D ++RLW++ TG F G H +VLSV F SD +I S D T+K+W+
Sbjct: 107 DGTLRLWDLTTGTTTRRFVG---HTKDVLSVAF-SSDNRQIVSGSRDKTIKLWN 156
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 104/293 (35%), Gaps = 62/293 (21%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXXXX 159
F ++G +G +R+ D++ + FVGH + +
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV------------------------- 134
Query: 160 XXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASC 218
+ +D++++LWN G+C H V V F P S I SC
Sbjct: 135 -AFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDES-HSEWVSCVRFSPNSSNPIIVSC 191
Query: 219 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFI 278
G D VK+W++ K T ++ ++ +V + G
Sbjct: 192 GWDKLVKVWNLAN---------------CKLKTNHIGHTGYLNTVTVSPD------GSLC 230
Query: 279 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 338
S D + +LW+ + DI+ W C + I + EG
Sbjct: 231 ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL----CAATGPSIKIWDLEG 286
Query: 339 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY--DGSTILSCCEDGAIWRW 389
KI V EL+ +I+ S A+ P + T++++ DG T+ + D + W
Sbjct: 287 KIIVDELKQE---VISTSSKAE---PPQCTSLAWSADGQTLFAGYTDNLVRVW 333
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 174 QDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSM 229
+D +++LWN I G GHR+ V V F P+ + I S D TVK+W++
Sbjct: 492 RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
D +RLW++ G+ F G H +VLSV F D +I S D T+K+W+
Sbjct: 451 DGELRLWDLAAGVSTRRFVG---HTKDVLSVAFS-LDNRQIVSASRDRTIKLWN 500
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
D ++RLW++ TG F G H +VLSV F SD +I S D T+K+W+
Sbjct: 84 DGTLRLWDLTTGTTTRRFVG---HTKDVLSVAF-SSDNRQIVSGSRDKTIKLWN 133
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 104/293 (35%), Gaps = 62/293 (21%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXXXX 159
F ++G +G +R+ D++ + FVGH + +
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV------------------------- 111
Query: 160 XXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASC 218
+ +D++++LWN G+C H V V F P S I SC
Sbjct: 112 -AFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDES-HSEWVSCVRFSPNSSNPIIVSC 168
Query: 219 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFI 278
G D VK+W++ K T ++ ++ +V + G
Sbjct: 169 GWDKLVKVWNLAN---------------CKLKTNHIGHTGYLNTVTVSPD------GSLC 207
Query: 279 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 338
S D + +LW+ + DI+ W C + I + EG
Sbjct: 208 ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL----CAATGPSIKIWDLEG 263
Query: 339 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY--DGSTILSCCEDGAIWRW 389
KI V EL+ +I+ S A+ P + T++++ DG T+ + D + W
Sbjct: 264 KIIVDELKQE---VISTSSKAE---PPQCTSLAWSADGQTLFAGYTDNLVRVW 310
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 178 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 230
V+L ++++G C I G HR E+L+V + P Y +A+ D+ VK+W ++
Sbjct: 168 VQLCDLKSGSCSHILQG---HRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 34/153 (22%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
VS C + ++ G +G I++I++ N ++ S VGH ++ I+
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ------------- 1017
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 208
+ +D +++WN QTG + + A H+ V DF
Sbjct: 1018 -------------FTADGKTLISSSEDSVIQVWNWQTGDYVFLQA----HQETV--KDFR 1058
Query: 209 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 241
R+ S D TVK+W++ +E+ FT
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNV--ITGRIERDFT 1089
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 173 GQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW---SM 229
G D++++++ +TG +L H +EVL F D Y IA+C D VKIW +
Sbjct: 641 GADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDSY-IATCSADKKVKIWDSATG 696
Query: 230 KEFWTYVEKS 239
K TY E S
Sbjct: 697 KLVHTYDEHS 706
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 327 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 386
H A G+ +G I + EL ++ V + + H K +R + DG T++S ED I
Sbjct: 979 HLEYVAFGDEDGAIKIIELPNNR-VFSSGVGH---KKAVRHIQFTADGKTLISSSEDSVI 1034
Query: 387 WRWD 390
W+
Sbjct: 1035 QVWN 1038
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 178 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 230
++LW++ C GH N V F P D +ASC D T+++W ++
Sbjct: 732 LKLWDLNQKEC---RNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVR 780
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 34/153 (22%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
VS C + ++ G +G I++I++ N ++ S VGH ++ I+
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ------------- 1010
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 208
+ +D +++WN QTG + + A H+ V DF
Sbjct: 1011 -------------FTADGKTLISSSEDSVIQVWNWQTGDYVFLQA----HQETV--KDFR 1051
Query: 209 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 241
R+ S D TVK+W++ +E+ FT
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNV--ITGRIERDFT 1082
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 173 GQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW---SM 229
G D++++++ +TG +L H +EVL F D Y IA+C D VKIW +
Sbjct: 634 GADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDSY-IATCSADKKVKIWDSATG 689
Query: 230 KEFWTYVEKS 239
K TY E S
Sbjct: 690 KLVHTYDEHS 699
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 327 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 386
H A G+ +G I + EL ++ V + + H K +R + DG T++S ED I
Sbjct: 972 HLEYVAFGDEDGAIKIIELPNNR-VFSSGVGH---KKAVRHIQFTADGKTLISSSEDSVI 1027
Query: 387 WRWD 390
W+
Sbjct: 1028 QVWN 1031
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 178 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 230
++LW++ C GH N V F P D +ASC D T+++W ++
Sbjct: 725 LKLWDLNQKEC---RNTMFGHTNSVNHCRFSPDDEL-LASCSADGTLRLWDVR 773
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 38/183 (20%)
Query: 211 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 270
D RIASCG D T++++ + +E H + V C
Sbjct: 632 DGQRIASCGADKTLQVFKAETGEKLLE-----------------------IKAHEDEVLC 668
Query: 271 NRWLGD--FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 328
+ D FI + SVD ++ +W T +++ Y + F+ H+
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSM---------TGELVHTYDEHSEQVNCCHFTNSSHH 719
Query: 329 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 388
A G+ + + +W+L R + + + S D + SC DG +
Sbjct: 720 LLLATGSSDCFLKLWDLNQKE----CRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 389 WDA 391
WDA
Sbjct: 776 WDA 778
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 32/141 (22%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXX 148
VS C + ++ G NG I ++++ N ++ +S H ++ I+
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQ------------- 1016
Query: 149 XXXXXXXXXXXXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 208
+ D +++WN Q CI + GH+ V DF
Sbjct: 1017 -------------FTADEKTLISSSDDAEIQVWNWQLDKCIFL----RGHQETV--KDFR 1057
Query: 209 PSDIYRIASCGMDNTVKIWSM 229
R+ S D TVK+W++
Sbjct: 1058 LLKNSRLLSWSFDGTVKVWNI 1078
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
D +V++WN+ TG F H+ VLS D D + +S D T KIWS
Sbjct: 1070 DGTVKVWNIITGNKEKDFVC---HQGTVLSCDI-SHDATKFSSTSADKTAKIWS 1119
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 229
D ++RLW+++ G C+ + GH V + F D RI S D +K+W +
Sbjct: 315 DNTIRLWDIECGACLRVLE---GHEELVRCIRF---DNKRIVSGAYDGKIKVWDL 363
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 50/224 (22%)
Query: 174 QDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 233
+D S+ +W++ + I + GHR V VDF D Y +++ G D T+K+W+
Sbjct: 231 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG-DRTIKVWN----- 282
Query: 234 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 293
T +F V + H + C ++ ++S S DN I LW+ +
Sbjct: 283 -----------------TSTCEF-VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324
Query: 294 MKE-QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL------Q 346
EG ++++ F G +GKI VW+L +
Sbjct: 325 CGACLRVLEGHEELVR--------------CIRFDNKRIVSGAYDGKIKVWDLVAALDPR 370
Query: 347 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390
+ L R S R + +D I+S D I WD
Sbjct: 371 APAGTLCLRTLVEHSGRVFR---LQFDEFQIVSSSHDDTILIWD 411
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 175 DESVRLWNVQTGICILIFAGA--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 230
D++ LW+V TG I IF GH +VLS+ + + S D TV++W ++
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 333 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390
+G + +W+L + P + A L+ S A+S D SCC DG I WD
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELT--SSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
C D ++ +W++ + F G H + +D +D ++ + G+DNTV+ W
Sbjct: 156 CFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCIDIS-NDGTKLWTGGLDNTVRSWD 211
Query: 229 MKEFWTYVEKSFT 241
++E + FT
Sbjct: 212 LREGRQLQQHDFT 224
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
L D ++R+W+ G F G H ++S + D ++ SC MD +V++WS
Sbjct: 262 LLSASDDGTLRIWHGGNGNSQNCFYG---HSQSIVSASWVGDD--KVISCSMDGSVRLWS 316
Query: 229 MKE 231
+K+
Sbjct: 317 LKQ 319
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 173 GQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 227
GQD + +W+V+ G + A H E+ V FHPS+ + +C D ++ W
Sbjct: 256 GQDGMLSIWDVRQGTMPVSLLKA--HEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 329 NAAAIGNREGKIFVWEL-QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 387
+ A G ++G + +W++ Q + PV + + A+ + + + +C EDG++W
Sbjct: 250 HVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPS---NPEHLFTCSEDGSLW 306
Query: 388 RWDA 391
WDA
Sbjct: 307 HWDA 310
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 45 DSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104
DS+Y VG +V ++ GV + + Y + + + + +S A + DG +L +G
Sbjct: 133 DSQYLATGTHVG--KVNIF-----GVESGKKEYSLDTRGK--FILSIAYSPDG-KYLASG 182
Query: 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP 138
I+GII + D++ KL + GH I + P
Sbjct: 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 216
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
D S+ +W+++ L G H+ +LS+D+ D + + S G DNTV +W+
Sbjct: 239 DPSILIWDLRNANTPLQTLNQG-HQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 227
D++V+L+ + + A GH + V S+ F PS R+ASC D TV+IW
Sbjct: 171 DDTVKLYREEEDDWVCC-ATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIW 221
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 197 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231
GH NEV SV + PS +A+C D +V +W + E
Sbjct: 103 GHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDE 136
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 173 GQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231
G D +R+W + I + GH+ V V + P Y +AS D T IW +
Sbjct: 35 GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY-LASASFDATTCIWKKNQ 92
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 171 RVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 230
++G+++S + + G L+F GGH ++ ++P++ + I S DN ++IW M
Sbjct: 351 KIGEEQSAE--DAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
Query: 231 E 231
E
Sbjct: 408 E 408
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 232
D++V LW+++ L H++E+ V + P + +AS G D + +W + +
Sbjct: 297 DKTVALWDLRN--LKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231
V D+ + +W+ ++ H EV + F+P + +A+ D TV +W ++
Sbjct: 248 VADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
Query: 232 F 232
Sbjct: 308 L 308
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXXX 158
L G + + + D+ N KL SF H D I +++ P
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW-- 349
Query: 159 XXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 218
+ ++G+++S + + G L+F GGH ++ ++P++ + I S
Sbjct: 350 ---------DLSKIGEEQSTE--DAEDGPPELLFI-HGGHTAKISDFSWNPNEPWIICSV 397
Query: 219 GMDNTVKIWSMKE 231
DN +++W M E
Sbjct: 398 SEDNIMQVWQMAE 410
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231
V D+ + +W+ + H EV + F+P + +A+ D TV +W ++
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 232 F 232
Sbjct: 310 L 310
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXXX 158
L G + + + D+ N KL SF H D I +++ P
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW-- 351
Query: 159 XXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 218
+ ++G+++S + + G L+F GGH ++ ++P++ + I S
Sbjct: 352 ---------DLSKIGEEQSTE--DAEDGPPELLFI-HGGHTAKISDFSWNPNEPWIICSV 399
Query: 219 GMDNTVKIWSMKE 231
DN +++W M E
Sbjct: 400 SEDNIMQVWQMAE 412
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231
V D+ + +W+ + H EV + F+P + +A+ D TV +W ++
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 232 F 232
Sbjct: 312 L 312
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXXX 158
L G + + + D+ N KL SF H D I +++ P
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW-- 353
Query: 159 XXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 218
+ ++G+++S + + G L+F GGH ++ ++P++ + I S
Sbjct: 354 ---------DLSKIGEEQSTE--DAEDGPPELLFI-HGGHTAKISDFSWNPNEPWIICSV 401
Query: 219 GMDNTVKIWSMKE 231
DN +++W M E
Sbjct: 402 SEDNIMQVWQMAE 414
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231
V D+ + +W+ + H EV + F+P + +A+ D TV +W ++
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 232 F 232
Sbjct: 314 L 314
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXXX 158
L G + + + D+ N KL SF H D I +++ P
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW-- 345
Query: 159 XXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 218
+ ++G+++S + + G L+F GGH ++ ++P++ + I S
Sbjct: 346 ---------DLSKIGEEQSPE--DAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSV 393
Query: 219 GMDNTVKIWSMKE 231
DN +++W M E
Sbjct: 394 SEDNIMQVWQMAE 406
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 232
D++V LW+++ L H++E+ V + P + +AS G D + +W + +
Sbjct: 295 DKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKI 350
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231
V D+ + +W+ ++ H EV + F+P + +A+ D TV +W ++
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305
Query: 232 F 232
Sbjct: 306 L 306
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 198 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 230
H +V VD+ P D RI +CG D +W++K
Sbjct: 51 HNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLK 82
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 21/95 (22%)
Query: 197 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256
G + SVDF PS +RI S DNTV I+ F KF + + +
Sbjct: 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---------------KFKSTFGEH 189
Query: 257 PVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 291
F+ SV N G S D IVL+
Sbjct: 190 TKFVHSVRYNP------DGSLFASTGGDGTIVLYN 218
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 198 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256
H+ +V V +P + +A+ +D TVKIW +++ + SF ++ LP + P F
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ--VRGKASFLYS-LPHRHPVNAACF 305
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 198 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256
H+ +V V +P + +A+ +D TVKIW +++ + SF ++ LP + P F
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ--VRGKASFLYS-LPHRHPVNAACF 304
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 198 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 230
H +V +D+ P D RI +CG D +W++K
Sbjct: 51 HNGQVTGIDWAP-DSNRIVTCGTDRNAYVWTLK 82
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 232
D++V LW+++ L H++E+ V + P + +AS G D + +W + +
Sbjct: 297 DKTVALWDLRN--LKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231
V D+ + +W+ ++ H EV + F+P + +A+ D TV +W ++
Sbjct: 248 VADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
Query: 232 F 232
Sbjct: 308 L 308
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 171 RVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 230
++G+++S + + G L+F GGH ++ ++P++ + I S DN +IW
Sbjct: 351 KIGEEQSAE--DAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXA 407
Query: 231 E 231
E
Sbjct: 408 E 408
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 198 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256
H+ +V V +P + +A+ +D TVKIW +++ + SF ++ LP + P F
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ--VRGKASFLYS-LPHRHPVNAACF 304
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 175 DESVRLWNVQTGI--CILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIW 227
D++VR+W C+ + GH V S DF ++ ++R+ S D+TV++W
Sbjct: 174 DDTVRIWKDYDDDWECVAVL---NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 197 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231
GH NEV V + +D Y +A+C D +V IW E
Sbjct: 105 GHENEVKGVAW-SNDGYYLATCSRDKSVWIWETDE 138
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 31/134 (23%)
Query: 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPXXXXXXXXXXXXXXXX 157
+ L A G +G + DV + +L +SF GHG + + P +
Sbjct: 167 MQILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF------------ 213
Query: 158 XXXXXXXXRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIA 216
+ G D+ +W++++G C+ F H ++V SV ++PS D + A
Sbjct: 214 ------------VSGGCDKKAMVWDMRSGQCVQAFE---THESDVNSVRYYPSGDAF--A 256
Query: 217 SCGMDNTVKIWSMK 230
S D T +++ ++
Sbjct: 257 SGSDDATCRLYDLR 270
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK---E 231
D S +LW+V+ G+C F GH +++ ++ F P+ A+ D T +++ ++ E
Sbjct: 205 DASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE 260
Query: 232 FWTY 235
TY
Sbjct: 261 LMTY 264
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK---E 231
D S +LW+V+ G+C F GH +++ ++ F P+ A+ D T +++ ++ E
Sbjct: 216 DASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE 271
Query: 232 FWTY 235
TY
Sbjct: 272 LMTY 275
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK---E 231
D S +LW+V+ G+C F GH +++ ++ F P+ A+ D T +++ ++ E
Sbjct: 205 DASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE 260
Query: 232 FWTY 235
TY
Sbjct: 261 LMTY 264
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK---E 231
D S +LW+V+ G+C F GH +++ ++ F P+ A+ D T +++ ++ E
Sbjct: 205 DASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE 260
Query: 232 FWTY 235
TY
Sbjct: 261 LMTY 264
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK---E 231
D S +LW+V+ G+C F GH +++ ++ F P+ A+ D T +++ ++ E
Sbjct: 205 DASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE 260
Query: 232 FWTY 235
TY
Sbjct: 261 LMTY 264
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIW 227
D SV++++V+ G ILI A GH V V + HP +ASC D V IW
Sbjct: 34 DRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 19/142 (13%)
Query: 245 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 304
+PS P + + P + N VD W +L+ ++DN + LW +
Sbjct: 9 IPS-LPDRILDAPEIRNDYYLNLVD---WSSGNVLAVALDNSVYLWSAS---------SG 55
Query: 305 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 364
DILQ + + + + N A+G ++ +W++Q RL + S S
Sbjct: 56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSA 110
Query: 365 IRQTAMSYDGSTILSCCEDGAI 386
R ++S++ + S G I
Sbjct: 111 -RVGSLSWNSYILSSGSRSGHI 131
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 19/146 (13%)
Query: 245 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 304
+PS P + + P + N VD W +L+ ++DN + LW +
Sbjct: 100 IPS-LPDRILDAPEIRNDYYLNLVD---WSSGNVLAVALDNSVYLWSAS---------SG 146
Query: 305 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 364
DILQ + + + + N A+G ++ +W++Q RL + S S
Sbjct: 147 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-----KRLRNMTSHS- 200
Query: 365 IRQTAMSYDGSTILSCCEDGAIWRWD 390
R ++S++ + S G I D
Sbjct: 201 ARVGSLSWNSYILSSGSRSGHIHHHD 226
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 19/146 (13%)
Query: 245 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 304
+PS P + + P + N VD W +L+ ++DN + LW +
Sbjct: 89 IPS-LPDRILDAPEIRNDYYLNLVD---WSSGNVLAVALDNSVYLWSAS---------SG 135
Query: 305 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 364
DILQ + + + + N A+G ++ +W++Q RL + S S
Sbjct: 136 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-----KRLRNMTSHS- 189
Query: 365 IRQTAMSYDGSTILSCCEDGAIWRWD 390
R ++S++ + S G I D
Sbjct: 190 ARVGSLSWNSYILSSGSRSGHIHHHD 215
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 170 LRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 229
L G D + +W+V TG +L G H + + SVD+ SC D V++
Sbjct: 148 LSAGXDNVILVWDVGTGAAVLTL-GPDVHPDTIYSVDWSRDGALICTSC-RDKRVRVIEP 205
Query: 230 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVL 289
++ EK D P + VH+ +V + L S+ + ++ L
Sbjct: 206 RKGTVVAEK-----DRPHE----------GTRPVHAVFVSEGKILTTG-FSRMSERQVAL 249
Query: 290 WEPKMKEQ 297
W+ K E+
Sbjct: 250 WDTKHLEE 257
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 174 QDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 229
+D +V +W + G +L GH V V +HP+ + S G DN + +W +
Sbjct: 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 197 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256
GH VL + + P + IAS D TV +W ++P ++
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVW----------------EIPDGGLVLPLRE 122
Query: 257 PVFIASVHSNYVDCNRW---LGDFILSKSVDNEIVLWE 291
PV H+ V W + +LS DN I++W+
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 174 QDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228
D ++L + TG + + G H + V + P+ I SCG D TV+IWS
Sbjct: 203 NDGLIKLVDXHTGDVLRTYEG---HESFVYCIKLLPNG--DIVSCGEDRTVRIWS 252
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 309 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348
K P+ CD+W + D+ ++ AA R + WE S
Sbjct: 234 KIPLFTCDVWEHAYYLDYQHDRAAYLTRWWSLINWEFADS 273
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 198 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256
H+ +V +F+P + +A+ +D TVK+W ++ +K+ ++P + P F
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI---KDKNSYIAEMPHEKPVNAAYF 257
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 198 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256
H+ +V +F+P + +A+ +D TVK+W ++ +K+ ++P + P F
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI---KDKNSYIAEMPHEKPVNAAYF 258
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 278 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 337
IL S + LWE KE ++ K+ E D S A G ++
Sbjct: 108 ILVASDSGAVELWEILEKESL-------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160
Query: 338 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI-LSCCEDGAIWRWD 390
+ VW+L S VL + +H+ S + A TI LSC EDG I WD
Sbjct: 161 FSVKVWDL-SQKAVLKSYNAHS---SEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 174 QDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 229
+D +V +W + G +L GH V V +HP+ + S G DN + +W +
Sbjct: 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,757,906
Number of Sequences: 62578
Number of extensions: 474555
Number of successful extensions: 1416
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 408
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)