Query 016185
Match_columns 394
No_of_seqs 633 out of 1795
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 04:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.4E-54 7.4E-59 342.1 26.4 315 24-390 106-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-49 8.2E-54 317.1 22.0 284 30-390 172-458 (459)
3 KOG0286 G-protein beta subunit 100.0 3.9E-47 8.5E-52 291.8 31.7 295 18-390 40-343 (343)
4 KOG0271 Notchless-like WD40 re 100.0 3.2E-46 6.9E-51 296.9 25.1 267 81-393 113-440 (480)
5 KOG0279 G protein beta subunit 100.0 7E-44 1.5E-48 272.2 32.6 297 22-393 4-314 (315)
6 KOG0645 WD40 repeat protein [G 100.0 2.4E-43 5.2E-48 268.2 32.8 299 23-392 4-311 (312)
7 KOG0272 U4/U6 small nuclear ri 100.0 9.6E-45 2.1E-49 291.8 19.5 264 5-344 191-458 (459)
8 KOG0265 U5 snRNP-specific prot 100.0 3.8E-42 8.2E-47 265.3 25.8 293 23-391 37-337 (338)
9 KOG0315 G-protein beta subunit 100.0 1.6E-41 3.5E-46 255.2 28.4 276 48-393 9-289 (311)
10 KOG0295 WD40 repeat-containing 100.0 2.2E-42 4.8E-47 273.2 24.2 291 21-391 96-405 (406)
11 KOG0273 Beta-transducin family 100.0 7E-42 1.5E-46 279.1 27.8 289 31-393 176-483 (524)
12 KOG0318 WD40 repeat stress pro 100.0 7.5E-41 1.6E-45 276.6 34.2 363 3-393 162-561 (603)
13 KOG0285 Pleiotropic regulator 100.0 9.1E-42 2E-46 269.3 26.5 297 18-392 136-439 (460)
14 KOG1034 Transcriptional repres 100.0 2.4E-41 5.1E-46 264.1 26.3 348 20-393 24-384 (385)
15 KOG0284 Polyadenylation factor 100.0 4.1E-43 9E-48 281.3 16.5 280 33-391 96-379 (464)
16 KOG0273 Beta-transducin family 100.0 1E-40 2.2E-45 272.3 28.9 277 33-392 235-523 (524)
17 KOG0296 Angio-associated migra 100.0 3.5E-40 7.5E-45 261.0 29.9 308 26-392 57-398 (399)
18 KOG0277 Peroxisomal targeting 100.0 1.5E-41 3.2E-46 256.1 20.2 284 36-390 11-307 (311)
19 KOG0319 WD40-repeat-containing 100.0 2.2E-40 4.7E-45 284.3 27.8 341 16-393 87-536 (775)
20 cd00200 WD40 WD40 domain, foun 100.0 8.3E-39 1.8E-43 271.3 35.3 284 27-390 3-289 (289)
21 KOG0276 Vesicle coat complex C 100.0 5.8E-40 1.3E-44 276.8 26.8 287 23-388 3-295 (794)
22 KOG0263 Transcription initiati 100.0 1.1E-40 2.4E-45 288.7 22.5 274 29-393 374-650 (707)
23 KOG0318 WD40 repeat stress pro 100.0 1.4E-38 3E-43 263.3 33.8 348 4-393 74-518 (603)
24 KOG0281 Beta-TrCP (transducin 100.0 9.9E-42 2.1E-46 268.4 13.9 275 32-393 196-478 (499)
25 KOG0279 G protein beta subunit 100.0 1.2E-38 2.5E-43 243.7 28.9 240 81-393 13-263 (315)
26 PLN00181 protein SPA1-RELATED; 100.0 2.5E-38 5.5E-43 301.1 38.2 296 30-391 480-792 (793)
27 KOG0266 WD40 repeat-containing 100.0 1.4E-38 3.1E-43 282.2 31.5 294 21-392 146-454 (456)
28 KOG0282 mRNA splicing factor [ 100.0 4.1E-40 9E-45 269.6 18.7 296 22-390 203-503 (503)
29 KOG0291 WD40-repeat-containing 100.0 8.7E-38 1.9E-42 269.0 33.5 313 4-393 280-613 (893)
30 KOG0316 Conserved WD40 repeat- 100.0 6.3E-38 1.4E-42 234.1 27.4 283 25-390 9-297 (307)
31 KOG0286 G-protein beta subunit 100.0 3E-38 6.6E-43 243.0 26.4 252 19-344 83-343 (343)
32 KOG0291 WD40-repeat-containing 100.0 9.4E-37 2E-41 262.7 37.9 337 3-392 110-508 (893)
33 KOG0315 G-protein beta subunit 100.0 8.7E-38 1.9E-42 235.1 27.2 280 19-371 26-309 (311)
34 KOG0293 WD40 repeat-containing 100.0 4.8E-38 1E-42 252.7 23.5 294 21-393 212-514 (519)
35 KOG0319 WD40-repeat-containing 100.0 1.4E-37 3.1E-42 267.1 26.1 297 19-391 309-618 (775)
36 KOG0284 Polyadenylation factor 100.0 5.7E-39 1.2E-43 257.6 14.8 267 3-346 110-380 (464)
37 KOG0316 Conserved WD40 repeat- 100.0 3.6E-37 7.8E-42 230.1 22.2 242 81-393 15-258 (307)
38 KOG0295 WD40 repeat-containing 100.0 2.4E-37 5.2E-42 244.8 21.9 265 4-345 123-405 (406)
39 KOG0263 Transcription initiati 100.0 8.7E-37 1.9E-41 264.6 24.1 253 54-380 426-703 (707)
40 KOG0292 Vesicle coat complex C 100.0 2.4E-36 5.2E-41 264.6 26.3 308 29-392 5-321 (1202)
41 KOG0306 WD40-repeat-containing 100.0 4.4E-35 9.6E-40 252.3 33.4 337 3-392 79-580 (888)
42 KOG0285 Pleiotropic regulator 100.0 8.6E-37 1.9E-41 241.3 20.6 240 81-393 149-390 (460)
43 KOG0310 Conserved WD40 repeat- 100.0 4.1E-36 8.9E-41 246.6 23.9 279 33-389 26-306 (487)
44 KOG0278 Serine/threonine kinas 100.0 6E-37 1.3E-41 230.9 16.8 287 28-393 9-298 (334)
45 KOG0313 Microtubule binding pr 100.0 2.4E-35 5.1E-40 234.8 26.6 284 31-392 103-418 (423)
46 KOG0306 WD40-repeat-containing 100.0 2E-35 4.4E-40 254.4 28.2 287 28-393 368-665 (888)
47 KOG0281 Beta-TrCP (transducin 100.0 1.6E-37 3.5E-42 244.7 14.0 266 6-350 212-481 (499)
48 KOG0643 Translation initiation 100.0 4.3E-35 9.4E-40 222.9 26.4 291 28-392 5-317 (327)
49 KOG0645 WD40 repeat protein [G 100.0 1.9E-34 4.1E-39 219.9 28.7 270 4-346 30-311 (312)
50 KOG0265 U5 snRNP-specific prot 100.0 9.6E-35 2.1E-39 224.5 23.2 247 80-393 44-297 (338)
51 KOG0276 Vesicle coat complex C 100.0 3.8E-35 8.3E-40 247.8 22.7 245 81-393 11-258 (794)
52 KOG0305 Anaphase promoting com 100.0 1.7E-34 3.6E-39 245.9 26.4 275 37-393 181-462 (484)
53 KOG0274 Cdc4 and related F-box 100.0 8.9E-34 1.9E-38 250.6 30.3 274 32-393 207-483 (537)
54 KOG1407 WD40 repeat protein [F 100.0 1.2E-33 2.7E-38 214.3 26.4 287 27-393 14-312 (313)
55 KOG0277 Peroxisomal targeting 100.0 2.4E-34 5.1E-39 217.3 20.9 245 32-345 59-308 (311)
56 KOG0283 WD40 repeat-containing 100.0 1.1E-34 2.4E-39 253.6 21.9 303 26-392 259-576 (712)
57 KOG0266 WD40 repeat-containing 100.0 1.5E-33 3.2E-38 250.3 29.3 266 5-346 175-454 (456)
58 KOG0292 Vesicle coat complex C 100.0 1.5E-33 3.3E-38 247.1 28.7 306 13-390 31-395 (1202)
59 KOG0300 WD40 repeat-containing 100.0 4.2E-34 9E-39 223.1 22.4 299 21-394 136-478 (481)
60 KOG0288 WD40 repeat protein Ti 100.0 1.5E-35 3.2E-40 238.4 14.7 285 24-390 166-459 (459)
61 KOG0275 Conserved WD40 repeat- 100.0 3.1E-35 6.7E-40 230.1 14.8 289 26-390 205-507 (508)
62 KOG1446 Histone H3 (Lys4) meth 100.0 3.1E-32 6.6E-37 212.6 30.7 289 22-391 3-302 (311)
63 KOG0641 WD40 repeat protein [G 100.0 6.2E-32 1.3E-36 201.2 30.8 302 20-392 20-349 (350)
64 KOG0296 Angio-associated migra 100.0 1E-32 2.2E-37 218.8 26.3 294 3-346 78-398 (399)
65 KOG0299 U3 snoRNP-associated p 100.0 5E-33 1.1E-37 226.9 25.0 297 27-389 136-453 (479)
66 PLN00181 protein SPA1-RELATED; 100.0 3E-32 6.5E-37 259.7 34.4 264 60-392 460-738 (793)
67 KOG0772 Uncharacterized conser 100.0 2.3E-32 4.9E-37 226.2 25.2 297 24-389 158-484 (641)
68 KOG0268 Sof1-like rRNA process 100.0 1.2E-33 2.7E-38 223.8 16.0 285 25-392 58-345 (433)
69 KOG0640 mRNA cleavage stimulat 100.0 1.2E-32 2.7E-37 214.1 20.8 291 26-392 105-426 (430)
70 KOG0282 mRNA splicing factor [ 100.0 1.2E-33 2.6E-38 231.9 15.6 245 81-393 212-463 (503)
71 KOG0313 Microtubule binding pr 100.0 1.9E-32 4E-37 218.4 21.8 267 82-394 104-378 (423)
72 KOG0301 Phospholipase A2-activ 100.0 4.6E-32 9.9E-37 231.9 25.7 284 21-392 2-288 (745)
73 cd00200 WD40 WD40 domain, foun 100.0 4E-31 8.7E-36 224.1 31.3 263 4-344 24-289 (289)
74 KOG0289 mRNA splicing factor [ 100.0 1.2E-31 2.7E-36 217.3 25.7 282 34-391 220-505 (506)
75 KOG0294 WD40 repeat-containing 100.0 1.3E-31 2.7E-36 208.7 24.6 272 20-371 30-306 (362)
76 KOG0264 Nucleosome remodeling 100.0 2.8E-32 6.1E-37 222.4 21.5 252 81-392 122-404 (422)
77 KOG1539 WD repeat protein [Gen 100.0 1.5E-30 3.3E-35 227.0 31.9 323 16-391 185-647 (910)
78 KOG0274 Cdc4 and related F-box 100.0 2.7E-31 5.8E-36 235.0 27.8 246 23-350 239-486 (537)
79 KOG0264 Nucleosome remodeling 100.0 3.5E-32 7.6E-37 221.8 20.3 261 31-347 122-405 (422)
80 PTZ00421 coronin; Provisional 100.0 1.7E-30 3.8E-35 229.6 32.1 269 33-373 20-314 (493)
81 KOG0293 WD40 repeat-containing 100.0 5E-32 1.1E-36 218.3 19.9 269 4-348 239-515 (519)
82 PTZ00420 coronin; Provisional 100.0 6.7E-30 1.5E-34 226.9 33.8 246 55-374 50-318 (568)
83 KOG1408 WD40 repeat protein [F 100.0 7E-31 1.5E-35 225.6 25.1 321 24-392 69-713 (1080)
84 KOG0278 Serine/threonine kinas 100.0 4.8E-32 1E-36 204.5 14.2 261 7-349 35-300 (334)
85 KOG0973 Histone transcription 100.0 3.2E-30 6.9E-35 231.6 27.1 295 32-393 12-356 (942)
86 PTZ00421 coronin; Provisional 100.0 1.3E-29 2.9E-34 224.1 30.4 234 95-393 30-291 (493)
87 KOG2106 Uncharacterized conser 100.0 5.5E-28 1.2E-32 199.9 36.6 322 14-390 181-519 (626)
88 KOG0647 mRNA export protein (c 100.0 1.5E-29 3.2E-34 196.1 25.4 278 31-380 25-311 (347)
89 KOG2106 Uncharacterized conser 100.0 5.7E-29 1.2E-33 205.7 30.3 333 25-393 96-478 (626)
90 KOG1446 Histone H3 (Lys4) meth 100.0 8.8E-29 1.9E-33 193.4 29.7 250 82-393 13-263 (311)
91 PTZ00420 coronin; Provisional 100.0 2.9E-29 6.2E-34 222.9 30.2 226 103-393 49-294 (568)
92 KOG1407 WD40 repeat protein [F 100.0 6.6E-30 1.4E-34 194.1 21.9 240 81-392 18-261 (313)
93 KOG0308 Conserved WD40 repeat- 100.0 5.6E-31 1.2E-35 223.8 17.0 288 31-393 19-328 (735)
94 KOG0294 WD40 repeat-containing 100.0 4.6E-29 9.9E-34 194.6 26.0 241 76-393 36-282 (362)
95 KOG0310 Conserved WD40 repeat- 100.0 7.8E-30 1.7E-34 209.9 22.6 247 25-347 60-310 (487)
96 KOG0275 Conserved WD40 repeat- 100.0 1.4E-30 3.1E-35 204.0 17.4 243 83-393 213-468 (508)
97 KOG0647 mRNA export protein (c 100.0 5E-29 1.1E-33 193.2 23.0 244 81-391 25-280 (347)
98 KOG1036 Mitotic spindle checkp 100.0 7.4E-29 1.6E-33 192.9 23.8 270 32-381 12-293 (323)
99 KOG0299 U3 snoRNP-associated p 100.0 2.5E-29 5.4E-34 205.5 21.5 244 81-393 140-411 (479)
100 KOG4283 Transcription-coupled 100.0 8.8E-28 1.9E-32 185.9 26.6 309 30-391 40-364 (397)
101 KOG0643 Translation initiation 100.0 2.9E-28 6.3E-33 185.9 23.6 237 81-382 8-251 (327)
102 KOG0289 mRNA splicing factor [ 100.0 3.7E-28 8E-33 197.3 25.1 265 5-345 235-505 (506)
103 KOG0305 Anaphase promoting com 100.0 1.6E-28 3.4E-33 209.6 24.0 243 30-349 214-464 (484)
104 KOG1332 Vesicle coat complex C 100.0 6.2E-29 1.3E-33 187.1 18.0 254 81-391 9-285 (299)
105 KOG0639 Transducin-like enhanc 100.0 5.6E-29 1.2E-33 205.7 19.5 281 31-392 417-704 (705)
106 KOG2096 WD40 repeat protein [G 100.0 5.9E-28 1.3E-32 188.8 23.8 300 27-390 80-400 (420)
107 KOG0269 WD40 repeat-containing 100.0 2.7E-29 5.9E-34 217.6 18.1 288 34-389 40-337 (839)
108 KOG1332 Vesicle coat complex C 100.0 5.9E-29 1.3E-33 187.2 17.2 252 30-348 8-288 (299)
109 KOG0646 WD40 repeat protein [G 100.0 3.2E-28 6.9E-33 199.4 22.8 276 51-393 9-308 (476)
110 KOG1063 RNA polymerase II elon 100.0 8.9E-28 1.9E-32 205.8 26.3 347 4-393 162-649 (764)
111 KOG0308 Conserved WD40 repeat- 100.0 2.3E-29 5.1E-34 214.0 16.5 240 95-393 35-286 (735)
112 KOG1036 Mitotic spindle checkp 100.0 6.9E-28 1.5E-32 187.6 22.6 244 81-393 11-263 (323)
113 KOG0288 WD40 repeat protein Ti 100.0 1.4E-29 3E-34 204.2 13.0 244 81-393 173-418 (459)
114 KOG0321 WD40 repeat-containing 100.0 4.9E-28 1.1E-32 205.6 22.8 298 37-393 53-392 (720)
115 KOG0650 WD40 repeat nucleolar 100.0 1.8E-27 3.9E-32 200.8 25.5 296 19-389 384-732 (733)
116 KOG1273 WD40 repeat protein [G 100.0 5.5E-27 1.2E-31 183.1 24.1 298 24-392 16-322 (405)
117 KOG2055 WD40 repeat protein [G 100.0 6.5E-27 1.4E-31 191.5 25.4 289 33-392 213-512 (514)
118 KOG2048 WD40 repeat protein [G 100.0 1.4E-25 3.1E-30 192.0 34.5 349 4-393 40-506 (691)
119 KOG0641 WD40 repeat protein [G 100.0 2.3E-26 5E-31 171.6 26.0 256 28-346 84-349 (350)
120 KOG2048 WD40 repeat protein [G 100.0 7.8E-26 1.7E-30 193.6 32.4 293 30-391 22-318 (691)
121 KOG2445 Nuclear pore complex c 100.0 2.4E-26 5.2E-31 178.9 26.5 264 81-391 11-317 (361)
122 KOG1539 WD repeat protein [Gen 100.0 3E-26 6.4E-31 200.5 30.1 336 34-393 160-607 (910)
123 KOG0973 Histone transcription 100.0 3.3E-27 7.1E-32 212.4 24.3 252 25-348 61-357 (942)
124 KOG0640 mRNA cleavage stimulat 100.0 1.3E-27 2.9E-32 186.2 17.7 249 81-393 110-384 (430)
125 KOG0301 Phospholipase A2-activ 100.0 5.4E-27 1.2E-31 201.1 22.5 256 6-347 30-289 (745)
126 KOG0302 Ribosome Assembly prot 100.0 7.5E-27 1.6E-31 186.5 21.8 250 81-385 149-432 (440)
127 KOG0270 WD40 repeat-containing 100.0 3.8E-27 8.2E-32 192.0 19.8 254 35-349 175-452 (463)
128 KOG0300 WD40 repeat-containing 100.0 3.5E-27 7.6E-32 184.5 18.7 242 81-393 146-429 (481)
129 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 3.6E-25 7.8E-30 189.2 32.7 266 50-393 2-280 (300)
130 KOG0772 Uncharacterized conser 100.0 4.4E-27 9.5E-32 195.1 19.3 258 81-393 165-446 (641)
131 KOG0268 Sof1-like rRNA process 100.0 3E-27 6.5E-32 187.8 16.4 264 3-348 81-347 (433)
132 KOG0270 WD40 repeat-containing 100.0 1.7E-26 3.7E-31 188.2 19.2 235 96-393 191-450 (463)
133 KOG4328 WD40 protein [Function 99.9 9E-26 2E-30 184.7 23.0 306 21-391 174-494 (498)
134 KOG0269 WD40 repeat-containing 99.9 7.5E-27 1.6E-31 202.6 17.5 240 86-393 42-297 (839)
135 KOG2445 Nuclear pore complex c 99.9 2.9E-25 6.3E-30 172.9 24.5 261 30-347 10-319 (361)
136 KOG0267 Microtubule severing p 99.9 9.1E-28 2E-32 206.7 10.9 251 51-383 6-259 (825)
137 KOG0321 WD40 repeat-containing 99.9 4.6E-26 9.9E-31 193.7 20.7 275 87-393 53-348 (720)
138 KOG0646 WD40 repeat protein [G 99.9 7.4E-26 1.6E-30 185.6 19.6 258 49-373 50-330 (476)
139 KOG1274 WD40 repeat protein [G 99.9 1E-24 2.2E-29 192.9 27.5 279 30-387 10-295 (933)
140 KOG1063 RNA polymerase II elon 99.9 9.9E-25 2.1E-29 187.3 26.3 326 28-392 262-699 (764)
141 KOG1274 WD40 repeat protein [G 99.9 6.1E-25 1.3E-29 194.4 25.0 249 81-393 11-263 (933)
142 KOG0302 Ribosome Assembly prot 99.9 3.4E-25 7.3E-30 177.1 20.4 253 29-343 147-435 (440)
143 KOG4283 Transcription-coupled 99.9 1E-24 2.2E-29 169.1 21.6 214 81-350 41-280 (397)
144 KOG4378 Nuclear protein COP1 [ 99.9 9.9E-25 2.1E-29 180.5 20.3 269 50-393 4-281 (673)
145 KOG0283 WD40 repeat-containing 99.9 4.5E-25 9.7E-30 193.8 19.2 205 81-346 367-576 (712)
146 KOG0267 Microtubule severing p 99.9 1.8E-26 3.9E-31 198.8 10.0 236 27-338 22-260 (825)
147 KOG1273 WD40 repeat protein [G 99.9 1.6E-24 3.5E-29 169.4 17.8 244 86-392 26-280 (405)
148 KOG4378 Nuclear protein COP1 [ 99.9 2.7E-24 5.8E-29 178.0 19.7 262 36-374 37-305 (673)
149 KOG1007 WD repeat protein TSSC 99.9 5.3E-24 1.1E-28 164.6 20.0 267 22-347 52-362 (370)
150 KOG0307 Vesicle coat complex C 99.9 1.9E-25 4.1E-30 202.2 13.9 248 82-393 63-328 (1049)
151 KOG1188 WD40 repeat protein [G 99.9 4.6E-24 9.9E-29 168.6 18.8 290 50-392 41-346 (376)
152 KOG1009 Chromatin assembly com 99.9 6.5E-23 1.4E-27 165.7 24.0 305 33-391 13-371 (434)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.4E-22 2E-26 168.1 32.3 286 5-372 5-300 (300)
154 KOG2919 Guanine nucleotide-bin 99.9 4.4E-23 9.5E-28 162.0 21.5 282 36-383 52-361 (406)
155 KOG0639 Transducin-like enhanc 99.9 5.5E-24 1.2E-28 176.4 15.7 236 33-345 465-703 (705)
156 KOG1538 Uncharacterized conser 99.9 5E-23 1.1E-27 176.6 21.2 273 35-392 14-293 (1081)
157 KOG1445 Tumor-specific antigen 99.9 3.3E-23 7.3E-28 176.6 19.5 118 268-392 630-750 (1012)
158 KOG0307 Vesicle coat complex C 99.9 3.6E-24 7.7E-29 194.0 14.5 255 33-349 64-330 (1049)
159 KOG0290 Conserved WD40 repeat- 99.9 1.3E-21 2.9E-26 151.5 24.5 290 34-388 45-361 (364)
160 KOG1408 WD40 repeat protein [F 99.9 3.7E-23 8.1E-28 178.6 17.7 250 32-347 458-714 (1080)
161 KOG1034 Transcriptional repres 99.9 2.4E-22 5.2E-27 158.2 20.7 263 31-346 87-383 (385)
162 KOG0644 Uncharacterized conser 99.9 1.7E-24 3.8E-29 189.6 9.6 287 19-391 176-467 (1113)
163 KOG1445 Tumor-specific antigen 99.9 4E-22 8.7E-27 170.1 22.6 187 173-392 600-798 (1012)
164 KOG4328 WD40 protein [Function 99.9 2.2E-22 4.8E-27 165.0 20.0 253 81-392 184-450 (498)
165 KOG1334 WD40 repeat protein [G 99.9 8.9E-23 1.9E-27 168.7 15.6 320 21-391 130-465 (559)
166 KOG2096 WD40 repeat protein [G 99.9 2E-21 4.4E-26 152.5 22.3 277 60-393 63-361 (420)
167 KOG4227 WD40 repeat protein [G 99.9 8.8E-22 1.9E-26 158.8 20.5 298 26-390 49-385 (609)
168 KOG2055 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 160.5 21.6 270 7-346 231-512 (514)
169 KOG1007 WD repeat protein TSSC 99.9 4.2E-22 9.1E-27 154.2 17.2 238 22-293 111-361 (370)
170 KOG1517 Guanine nucleotide bin 99.9 1.9E-21 4.2E-26 174.9 23.6 299 33-393 1064-1382(1387)
171 KOG1587 Cytoplasmic dynein int 99.9 4.3E-21 9.3E-26 169.1 25.0 275 60-393 224-517 (555)
172 KOG0303 Actin-binding protein 99.9 3E-21 6.5E-26 155.6 21.7 229 81-373 79-320 (472)
173 KOG0322 G-protein beta subunit 99.9 5.5E-22 1.2E-26 151.6 16.3 304 24-391 5-322 (323)
174 KOG0650 WD40 repeat nucleolar 99.9 2.7E-21 5.8E-26 163.9 20.2 266 79-390 396-678 (733)
175 KOG2919 Guanine nucleotide-bin 99.9 3.7E-21 8E-26 151.3 18.2 239 33-337 104-361 (406)
176 COG2319 FOG: WD40 repeat [Gene 99.9 8.2E-19 1.8E-23 157.8 36.3 291 28-393 60-360 (466)
177 KOG0290 Conserved WD40 repeat- 99.9 2.1E-20 4.6E-25 144.9 20.6 256 31-342 94-361 (364)
178 KOG1310 WD40 repeat protein [G 99.9 9.5E-21 2.1E-25 159.1 20.1 177 21-231 38-232 (758)
179 COG2319 FOG: WD40 repeat [Gene 99.9 7.2E-18 1.6E-22 151.6 37.5 290 23-393 145-443 (466)
180 KOG0303 Actin-binding protein 99.9 3.3E-20 7.2E-25 149.7 18.9 206 122-393 75-295 (472)
181 KOG0649 WD40 repeat protein [G 99.9 4.8E-19 1E-23 134.1 23.6 283 34-389 11-313 (325)
182 KOG0649 WD40 repeat protein [G 99.9 8.2E-20 1.8E-24 138.2 19.1 239 85-392 12-274 (325)
183 KOG1587 Cytoplasmic dynein int 99.9 1.8E-19 3.8E-24 159.0 23.9 263 23-348 233-518 (555)
184 KOG1188 WD40 repeat protein [G 99.9 3.7E-20 8.1E-25 146.7 16.4 291 3-346 42-346 (376)
185 KOG1524 WD40 repeat-containing 99.9 4.8E-20 1E-24 154.5 17.7 265 31-388 12-282 (737)
186 KOG0642 Cell-cycle nuclear pro 99.9 1.1E-20 2.3E-25 159.2 13.9 249 81-392 292-561 (577)
187 KOG1963 WD40 repeat protein [G 99.9 1.1E-18 2.3E-23 154.8 26.0 306 30-393 202-539 (792)
188 KOG2110 Uncharacterized conser 99.8 3.8E-17 8.1E-22 131.2 31.3 282 33-393 5-331 (391)
189 KOG0642 Cell-cycle nuclear pro 99.8 5.6E-20 1.2E-24 154.9 14.9 263 21-348 282-563 (577)
190 KOG1523 Actin-related protein 99.8 6.1E-18 1.3E-22 133.2 24.5 221 32-296 9-239 (361)
191 KOG1009 Chromatin assembly com 99.8 2.3E-18 5E-23 139.7 21.0 279 3-349 28-375 (434)
192 KOG1538 Uncharacterized conser 99.8 4.9E-19 1.1E-23 152.4 17.8 232 85-390 14-250 (1081)
193 PRK11028 6-phosphogluconolacto 99.8 4E-17 8.8E-22 140.8 29.9 276 52-392 5-304 (330)
194 KOG1272 WD40-repeat-containing 99.8 3.6E-20 7.9E-25 152.5 9.8 267 35-384 131-401 (545)
195 KOG1240 Protein kinase contain 99.8 3.4E-18 7.4E-23 156.6 22.9 307 23-390 1038-1431(1431)
196 KOG2110 Uncharacterized conser 99.8 3.6E-17 7.9E-22 131.3 24.6 238 85-393 7-249 (391)
197 KOG1963 WD40 repeat protein [G 99.8 1E-16 2.2E-21 142.4 28.6 314 38-393 21-376 (792)
198 KOG0644 Uncharacterized conser 99.8 7.2E-20 1.6E-24 161.1 8.2 236 81-392 188-426 (1113)
199 KOG1310 WD40 repeat protein [G 99.8 2.4E-18 5.3E-23 144.8 15.6 231 120-393 42-304 (758)
200 KOG4227 WD40 repeat protein [G 99.8 1.4E-17 3E-22 134.8 19.2 255 81-392 54-322 (609)
201 KOG2321 WD40 repeat protein [G 99.8 2.7E-17 5.9E-22 139.3 21.7 299 56-391 5-342 (703)
202 KOG2111 Uncharacterized conser 99.8 1.3E-15 2.7E-20 120.3 29.4 278 36-390 8-320 (346)
203 KOG0771 Prolactin regulatory e 99.8 9.6E-18 2.1E-22 136.9 16.1 205 91-392 150-354 (398)
204 KOG1517 Guanine nucleotide bin 99.8 1.1E-16 2.4E-21 144.8 22.8 281 5-348 1080-1383(1387)
205 KOG4497 Uncharacterized conser 99.8 1.3E-16 2.7E-21 126.4 20.2 304 38-392 13-391 (447)
206 KOG1524 WD40 repeat-containing 99.8 3.7E-17 8E-22 137.5 15.8 209 49-344 75-284 (737)
207 KOG2139 WD40 repeat protein [G 99.8 1.5E-15 3.2E-20 121.9 23.5 289 33-391 98-430 (445)
208 KOG2111 Uncharacterized conser 99.7 3.3E-15 7.1E-20 118.0 23.7 240 88-393 10-257 (346)
209 PRK11028 6-phosphogluconolacto 99.7 1.6E-14 3.4E-19 124.8 30.5 277 10-347 11-305 (330)
210 KOG1409 Uncharacterized conser 99.7 2.5E-16 5.5E-21 125.4 17.0 251 21-346 12-270 (404)
211 PF02239 Cytochrom_D1: Cytochr 99.7 2.3E-14 5E-19 123.4 29.3 306 20-393 23-348 (369)
212 KOG3881 Uncharacterized conser 99.7 1.1E-15 2.4E-20 123.7 19.3 252 82-393 54-321 (412)
213 KOG1523 Actin-related protein 99.7 2.2E-15 4.8E-20 119.0 20.0 235 82-373 9-260 (361)
214 KOG3881 Uncharacterized conser 99.7 2E-15 4.4E-20 122.3 20.2 271 32-373 54-342 (412)
215 KOG1272 WD40-repeat-containing 99.7 7.5E-17 1.6E-21 133.2 11.9 226 87-390 133-360 (545)
216 KOG1334 WD40 repeat protein [G 99.7 4.8E-16 1E-20 129.3 16.3 258 81-393 140-425 (559)
217 PRK01742 tolB translocation pr 99.7 2.7E-15 5.8E-20 133.5 21.8 232 60-373 186-426 (429)
218 KOG1354 Serine/threonine prote 99.7 3E-15 6.5E-20 119.4 19.2 306 33-389 25-431 (433)
219 KOG1240 Protein kinase contain 99.7 1.2E-14 2.6E-19 133.9 25.3 264 67-393 1037-1335(1431)
220 KOG2394 WD40 protein DMR-N9 [G 99.7 1.9E-15 4.1E-20 127.3 18.4 204 175-393 194-453 (636)
221 KOG0322 G-protein beta subunit 99.7 2.8E-15 6E-20 115.3 16.5 269 6-345 30-322 (323)
222 KOG0280 Uncharacterized conser 99.7 4.3E-14 9.4E-19 110.5 21.1 268 60-391 48-332 (339)
223 KOG2394 WD40 protein DMR-N9 [G 99.7 5.4E-15 1.2E-19 124.6 15.5 169 51-275 188-384 (636)
224 KOG0309 Conserved WD40 repeat- 99.6 3.5E-15 7.5E-20 130.5 14.3 304 19-393 11-340 (1081)
225 PRK01742 tolB translocation pr 99.6 1.5E-14 3.2E-19 128.7 18.1 218 27-325 197-426 (429)
226 KOG2139 WD40 repeat protein [G 99.6 6.4E-13 1.4E-17 107.0 24.8 290 5-346 114-431 (445)
227 KOG0771 Prolactin regulatory e 99.6 8.2E-15 1.8E-19 120.0 13.2 195 37-294 148-355 (398)
228 KOG4497 Uncharacterized conser 99.6 3E-12 6.5E-17 102.0 25.2 317 34-385 49-425 (447)
229 PRK03629 tolB translocation pr 99.6 6.9E-13 1.5E-17 117.8 24.3 230 60-372 181-427 (429)
230 KOG2321 WD40 repeat protein [G 99.6 3.5E-13 7.6E-18 114.8 19.8 247 31-348 49-345 (703)
231 PF02239 Cytochrom_D1: Cytochr 99.6 1.3E-11 2.8E-16 106.5 29.5 276 49-393 5-303 (369)
232 PRK04922 tolB translocation pr 99.6 1.2E-12 2.7E-17 116.8 22.7 231 60-372 186-432 (433)
233 KOG2315 Predicted translation 99.6 1.2E-11 2.6E-16 105.4 26.5 294 33-392 34-390 (566)
234 KOG1912 WD40 repeat protein [G 99.6 4E-12 8.6E-17 112.3 24.2 367 4-393 29-552 (1062)
235 PRK05137 tolB translocation pr 99.6 3.7E-12 8.1E-17 113.9 24.8 214 108-392 182-412 (435)
236 PRK05137 tolB translocation pr 99.5 4.5E-12 9.7E-17 113.4 23.7 231 60-373 184-433 (435)
237 PRK03629 tolB translocation pr 99.5 2.5E-12 5.4E-17 114.3 21.4 217 29-324 194-427 (429)
238 PRK02889 tolB translocation pr 99.5 9.6E-12 2.1E-16 110.7 24.8 234 60-373 178-425 (427)
239 PF10282 Lactonase: Lactonase, 99.5 9E-10 2E-14 95.3 36.0 277 59-392 14-322 (345)
240 KOG4547 WD40 repeat-containing 99.5 1.3E-11 2.7E-16 106.0 23.6 190 48-294 4-221 (541)
241 PF08662 eIF2A: Eukaryotic tra 99.5 2.6E-12 5.6E-17 100.7 17.7 116 82-231 58-180 (194)
242 KOG0974 WD-repeat protein WDR6 99.5 2.2E-12 4.7E-17 117.4 18.9 271 34-393 8-289 (967)
243 KOG0280 Uncharacterized conser 99.5 1.2E-11 2.5E-16 97.2 20.1 256 33-348 69-335 (339)
244 PRK04922 tolB translocation pr 99.5 4.2E-12 9E-17 113.4 19.8 161 28-232 198-370 (433)
245 KOG0974 WD-repeat protein WDR6 99.5 1.7E-12 3.8E-17 118.1 17.0 188 49-296 100-291 (967)
246 KOG4547 WD40 repeat-containing 99.5 2.7E-11 5.8E-16 104.0 21.7 206 99-347 6-221 (541)
247 PF08662 eIF2A: Eukaryotic tra 99.5 1E-11 2.2E-16 97.4 17.5 108 265-392 59-179 (194)
248 KOG1354 Serine/threonine prote 99.5 2.3E-11 4.9E-16 97.6 19.3 252 83-392 25-359 (433)
249 TIGR02800 propeller_TolB tol-p 99.4 7.2E-11 1.6E-15 105.7 24.2 209 60-345 172-396 (417)
250 PRK02889 tolB translocation pr 99.4 1.7E-11 3.7E-16 109.1 19.6 161 28-232 190-362 (427)
251 COG2706 3-carboxymuconate cycl 99.4 3E-09 6.4E-14 86.6 29.0 280 51-393 6-322 (346)
252 TIGR02658 TTQ_MADH_Hv methylam 99.4 7.6E-09 1.6E-13 87.5 32.3 267 58-393 27-331 (352)
253 KOG1064 RAVE (regulator of V-A 99.4 3.2E-12 7E-17 122.4 13.2 214 101-393 2183-2399(2439)
254 TIGR02800 propeller_TolB tol-p 99.4 1.5E-10 3.2E-15 103.7 23.2 213 108-391 170-396 (417)
255 KOG1912 WD40 repeat protein [G 99.4 1.9E-11 4.2E-16 108.1 16.5 265 34-347 16-305 (1062)
256 COG5354 Uncharacterized protei 99.4 3.2E-10 7E-15 95.8 22.8 281 28-392 27-348 (561)
257 KOG1064 RAVE (regulator of V-A 99.4 1.1E-11 2.3E-16 119.0 13.6 196 30-296 2205-2401(2439)
258 KOG2041 WD40 repeat protein [G 99.4 1.2E-10 2.6E-15 102.5 18.5 289 33-393 14-338 (1189)
259 KOG1409 Uncharacterized conser 99.3 2.5E-10 5.4E-15 91.8 18.0 243 81-392 22-270 (404)
260 COG4946 Uncharacterized protei 99.3 1.2E-08 2.6E-13 85.9 28.5 146 48-234 331-481 (668)
261 PRK00178 tolB translocation pr 99.3 1.2E-09 2.5E-14 98.1 24.7 233 60-373 181-428 (430)
262 PF10282 Lactonase: Lactonase, 99.3 7.1E-08 1.5E-12 83.6 34.8 269 19-348 23-324 (345)
263 PRK04792 tolB translocation pr 99.3 1.6E-09 3.4E-14 97.0 25.3 232 60-372 200-446 (448)
264 PLN02919 haloacid dehalogenase 99.3 1.2E-08 2.5E-13 100.0 32.8 267 37-393 571-889 (1057)
265 TIGR03300 assembly_YfgL outer 99.3 6.3E-09 1.4E-13 91.8 28.5 284 49-389 65-376 (377)
266 KOG2314 Translation initiation 99.3 1.1E-09 2.4E-14 93.6 22.1 301 19-392 237-573 (698)
267 COG5170 CDC55 Serine/threonine 99.3 7.9E-11 1.7E-15 93.4 14.1 263 33-345 26-366 (460)
268 KOG4532 WD40-like repeat conta 99.3 2E-09 4.4E-14 83.7 21.0 231 100-383 86-323 (344)
269 PRK00178 tolB translocation pr 99.3 1E-09 2.2E-14 98.5 21.3 162 28-232 193-365 (430)
270 KOG2314 Translation initiation 99.3 3.1E-09 6.7E-14 91.0 22.6 275 36-392 213-525 (698)
271 PRK04792 tolB translocation pr 99.3 9.2E-10 2E-14 98.4 20.2 161 29-232 213-384 (448)
272 KOG4714 Nucleoporin [Nuclear s 99.3 1.4E-10 3.1E-15 89.6 12.6 208 48-291 100-316 (319)
273 KOG4190 Uncharacterized conser 99.3 5.3E-11 1.2E-15 101.6 10.6 291 27-388 729-1032(1034)
274 PF04762 IKI3: IKI3 family; I 99.2 1.3E-07 2.8E-12 91.1 34.0 261 85-391 211-518 (928)
275 PRK01029 tolB translocation pr 99.2 9.9E-09 2.1E-13 91.2 24.3 243 60-374 167-426 (428)
276 KOG2315 Predicted translation 99.2 1.2E-08 2.6E-13 87.5 23.4 256 35-348 75-392 (566)
277 PRK01029 tolB translocation pr 99.2 8.7E-09 1.9E-13 91.5 22.7 202 29-296 180-406 (428)
278 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.1E-07 2.3E-12 80.6 27.4 271 21-356 35-338 (352)
279 KOG3914 WD repeat protein WDR4 99.2 5.2E-10 1.1E-14 91.9 11.7 158 37-235 66-228 (390)
280 COG2706 3-carboxymuconate cycl 99.2 1.2E-06 2.7E-11 71.7 30.8 285 31-371 37-345 (346)
281 PF15492 Nbas_N: Neuroblastoma 99.2 1.8E-07 3.9E-12 74.2 25.2 146 48-220 8-167 (282)
282 KOG2041 WD40 repeat protein [G 99.2 8.4E-10 1.8E-14 97.3 13.5 239 83-383 14-279 (1189)
283 KOG4714 Nucleoporin [Nuclear s 99.1 4.2E-09 9.1E-14 81.7 14.8 148 100-294 103-255 (319)
284 KOG0309 Conserved WD40 repeat- 99.1 5.9E-10 1.3E-14 98.5 11.3 224 83-374 24-257 (1081)
285 KOG4190 Uncharacterized conser 99.1 2.6E-10 5.7E-15 97.5 8.8 205 81-348 733-950 (1034)
286 PF04762 IKI3: IKI3 family; I 99.1 2.8E-07 6.2E-12 88.8 30.2 311 33-392 75-456 (928)
287 KOG1275 PAB-dependent poly(A) 99.1 2.7E-09 5.8E-14 96.6 15.1 181 168-390 149-340 (1118)
288 COG4946 Uncharacterized protei 99.1 3.4E-07 7.3E-12 77.5 26.2 212 94-380 275-506 (668)
289 KOG3914 WD repeat protein WDR4 99.1 3.2E-09 7E-14 87.3 14.1 150 94-298 71-228 (390)
290 COG5354 Uncharacterized protei 99.1 1.2E-07 2.7E-12 80.6 23.6 278 34-392 72-395 (561)
291 KOG2695 WD40 repeat protein [G 99.1 3.2E-10 6.9E-15 91.3 7.6 170 170-372 228-402 (425)
292 KOG4532 WD40-like repeat conta 99.1 3.7E-08 8E-13 76.9 18.5 241 50-348 85-333 (344)
293 PF07433 DUF1513: Protein of u 99.0 1.2E-06 2.7E-11 71.7 26.5 260 36-382 7-276 (305)
294 COG5170 CDC55 Serine/threonine 99.0 8.5E-09 1.8E-13 82.1 12.4 251 83-390 26-365 (460)
295 KOG2695 WD40 repeat protein [G 99.0 1.8E-09 3.9E-14 87.0 7.9 154 89-296 217-379 (425)
296 TIGR03300 assembly_YfgL outer 99.0 5.5E-07 1.2E-11 79.5 24.6 230 97-393 65-298 (377)
297 PF15492 Nbas_N: Neuroblastoma 99.0 1.3E-06 2.9E-11 69.4 23.1 204 166-393 8-260 (282)
298 PRK11138 outer membrane biogen 99.0 1.4E-06 2.9E-11 77.3 25.9 261 51-391 122-393 (394)
299 KOG1275 PAB-dependent poly(A) 98.9 2.8E-08 6E-13 90.3 14.4 189 51-291 149-340 (1118)
300 PF08450 SGL: SMP-30/Gluconola 98.9 1.9E-05 4E-10 65.2 31.7 230 38-333 4-243 (246)
301 PF13360 PQQ_2: PQQ-like domai 98.9 1.1E-06 2.4E-11 72.3 21.9 217 107-393 2-231 (238)
302 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.7E-11 72.0 22.1 227 60-349 5-233 (238)
303 KOG2066 Vacuolar assembly/sort 98.9 1.7E-07 3.7E-12 84.2 17.5 190 84-347 40-234 (846)
304 KOG0882 Cyclophilin-related pe 98.9 7.3E-08 1.6E-12 80.7 14.0 254 82-393 8-306 (558)
305 PLN02919 haloacid dehalogenase 98.9 2.3E-06 5E-11 84.3 26.2 217 36-296 626-891 (1057)
306 PF00400 WD40: WD domain, G-be 98.9 1.1E-08 2.4E-13 57.2 6.1 37 352-390 3-39 (39)
307 KOG1645 RING-finger-containing 98.8 5.1E-07 1.1E-11 74.7 16.4 79 81-187 191-269 (463)
308 KOG1645 RING-finger-containing 98.8 1E-06 2.3E-11 73.0 17.7 106 21-137 181-290 (463)
309 PF08450 SGL: SMP-30/Gluconola 98.8 5E-05 1.1E-09 62.7 28.4 225 89-381 5-244 (246)
310 KOG0882 Cyclophilin-related pe 98.8 1.6E-07 3.5E-12 78.7 12.3 209 127-393 8-232 (558)
311 KOG1008 Uncharacterized conser 98.8 5.7E-09 1.2E-13 91.1 3.9 206 83-347 56-276 (783)
312 PRK11138 outer membrane biogen 98.8 2.3E-05 5E-10 69.6 26.8 275 51-393 71-354 (394)
313 PF00400 WD40: WD domain, G-be 98.8 3.4E-08 7.5E-13 55.1 5.7 39 186-228 1-39 (39)
314 KOG2066 Vacuolar assembly/sort 98.8 1.1E-06 2.3E-11 79.3 17.6 188 33-293 39-233 (846)
315 PRK04043 tolB translocation pr 98.7 1.9E-05 4.2E-10 70.0 25.4 117 85-232 189-311 (419)
316 PRK04043 tolB translocation pr 98.7 1.8E-05 4E-10 70.1 22.6 153 35-232 189-359 (419)
317 PF06977 SdiA-regulated: SdiA- 98.6 4E-05 8.7E-10 62.0 20.9 223 123-389 16-247 (248)
318 KOG1832 HIV-1 Vpr-binding prot 98.5 5.4E-08 1.2E-12 88.3 3.2 164 22-232 1090-1257(1516)
319 KOG2114 Vacuolar assembly/sort 98.5 4.7E-05 1E-09 69.7 21.4 196 95-349 33-246 (933)
320 KOG1920 IkappaB kinase complex 98.5 8.7E-05 1.9E-09 70.6 23.8 220 129-393 69-323 (1265)
321 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00027 5.9E-09 55.8 26.6 142 49-231 23-166 (354)
322 KOG1832 HIV-1 Vpr-binding prot 98.5 8E-08 1.7E-12 87.3 3.8 193 119-393 1092-1292(1516)
323 KOG1920 IkappaB kinase complex 98.5 0.00041 8.8E-09 66.3 27.1 269 81-391 66-364 (1265)
324 PF04053 Coatomer_WDAD: Coatom 98.5 0.00014 3E-09 64.5 22.9 237 28-347 27-263 (443)
325 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00055 1.2E-08 54.1 22.5 86 49-142 63-149 (354)
326 KOG3621 WD40 repeat-containing 98.4 0.00059 1.3E-08 61.4 24.7 135 48-220 44-189 (726)
327 PF08596 Lgl_C: Lethal giant l 98.4 0.00051 1.1E-08 60.1 24.3 191 167-383 98-327 (395)
328 PRK02888 nitrous-oxide reducta 98.4 0.00025 5.4E-09 64.2 22.5 290 52-393 69-405 (635)
329 PF11768 DUF3312: Protein of u 98.4 2.7E-05 5.8E-10 68.5 15.9 89 111-231 239-330 (545)
330 PF07433 DUF1513: Protein of u 98.4 0.00048 1E-08 56.9 21.8 219 89-393 10-248 (305)
331 KOG3617 WD40 and TPR repeat-co 98.3 3.3E-05 7.2E-10 70.6 16.1 98 37-149 19-121 (1416)
332 cd00216 PQQ_DH Dehydrogenases 98.3 0.00059 1.3E-08 62.3 24.2 290 49-393 62-425 (488)
333 KOG3621 WD40 repeat-containing 98.3 5.6E-06 1.2E-10 73.8 10.0 115 268-392 38-154 (726)
334 PF14655 RAB3GAP2_N: Rab3 GTPa 98.3 0.0018 3.9E-08 56.6 24.9 95 38-138 6-118 (415)
335 PF00780 CNH: CNH domain; Int 98.3 0.0015 3.2E-08 55.0 23.7 237 95-393 5-256 (275)
336 KOG2114 Vacuolar assembly/sort 98.3 0.00027 5.8E-09 65.0 19.6 190 175-392 44-243 (933)
337 KOG1008 Uncharacterized conser 98.3 1.8E-07 4E-12 82.0 -0.0 192 4-231 73-276 (783)
338 PF11768 DUF3312: Protein of u 98.3 7.7E-06 1.7E-10 71.8 9.7 72 313-392 258-329 (545)
339 KOG3617 WD40 and TPR repeat-co 98.2 5.1E-05 1.1E-09 69.5 14.5 108 89-231 21-132 (1416)
340 PF06433 Me-amine-dh_H: Methyl 98.2 0.0022 4.8E-08 53.7 22.6 260 38-357 40-329 (342)
341 PF06977 SdiA-regulated: SdiA- 98.2 0.0022 4.8E-08 52.1 22.9 208 81-343 19-247 (248)
342 PF03178 CPSF_A: CPSF A subuni 98.2 0.0037 8E-08 53.9 25.8 225 60-343 4-262 (321)
343 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0045 9.8E-08 54.1 24.8 275 59-380 24-345 (353)
344 PF03178 CPSF_A: CPSF A subuni 98.1 0.0047 1E-07 53.2 27.3 232 108-388 2-261 (321)
345 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00073 1.6E-08 46.4 14.8 104 86-225 2-109 (111)
346 cd00216 PQQ_DH Dehydrogenases 98.1 0.0079 1.7E-07 55.1 27.3 58 176-236 256-325 (488)
347 PF08553 VID27: VID27 cytoplas 98.0 0.0019 4.1E-08 60.9 20.2 138 175-345 503-646 (794)
348 PF04841 Vps16_N: Vps16, N-ter 98.0 0.011 2.4E-07 52.6 26.5 159 59-231 62-247 (410)
349 PF04841 Vps16_N: Vps16, N-ter 98.0 0.011 2.5E-07 52.5 25.7 204 109-374 62-271 (410)
350 PHA02713 hypothetical protein; 97.9 0.0015 3.2E-08 60.6 18.9 178 176-393 320-534 (557)
351 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0012 2.5E-08 45.4 13.3 99 36-149 2-104 (111)
352 KOG2444 WD40 repeat protein [G 97.9 3.4E-05 7.3E-10 59.6 5.8 105 275-393 70-178 (238)
353 KOG4441 Proteins containing BT 97.8 0.0085 1.8E-07 55.6 21.3 227 97-392 285-546 (571)
354 KOG4640 Anaphase-promoting com 97.7 0.00016 3.5E-09 64.1 8.6 94 84-209 21-115 (665)
355 COG3490 Uncharacterized protei 97.7 0.016 3.5E-07 46.9 19.5 259 36-345 70-347 (366)
356 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.7E-09 39.9 5.4 37 352-390 4-40 (40)
357 PF04053 Coatomer_WDAD: Coatom 97.7 0.011 2.4E-07 52.7 20.0 221 91-392 38-262 (443)
358 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.023 5E-07 49.7 20.9 223 106-391 21-265 (353)
359 PF08553 VID27: VID27 cytoplas 97.7 0.0022 4.7E-08 60.5 15.0 146 211-391 492-646 (794)
360 KOG4640 Anaphase-promoting com 97.6 0.00036 7.8E-09 62.0 8.5 93 33-138 20-115 (665)
361 smart00320 WD40 WD40 repeats. 97.6 0.00023 5E-09 38.8 5.2 38 187-228 3-40 (40)
362 PF06433 Me-amine-dh_H: Methyl 97.6 0.034 7.4E-07 46.9 31.3 269 59-393 18-321 (342)
363 PF08596 Lgl_C: Lethal giant l 97.5 0.002 4.3E-08 56.5 12.4 159 201-392 3-173 (395)
364 PF14583 Pectate_lyase22: Olig 97.5 0.049 1.1E-06 46.9 25.2 168 48-231 46-223 (386)
365 PHA02713 hypothetical protein; 97.5 0.023 4.9E-07 52.9 19.1 69 271-350 460-537 (557)
366 PRK02888 nitrous-oxide reducta 97.3 0.012 2.6E-07 53.8 15.0 94 107-231 295-405 (635)
367 PF02897 Peptidase_S9_N: Proly 97.3 0.12 2.6E-06 46.5 28.5 246 35-352 125-410 (414)
368 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.15 3.2E-06 47.2 28.3 71 49-125 70-147 (527)
369 KOG4441 Proteins containing BT 97.3 0.074 1.6E-06 49.5 19.8 233 48-352 284-552 (571)
370 PF00780 CNH: CNH domain; Int 97.2 0.099 2.1E-06 44.0 25.0 228 2-296 8-258 (275)
371 PHA03098 kelch-like protein; P 97.2 0.049 1.1E-06 50.8 18.1 105 274-393 389-512 (534)
372 COG3391 Uncharacterized conser 97.2 0.15 3.3E-06 45.0 28.5 239 89-393 36-284 (381)
373 KOG2395 Protein involved in va 97.1 0.048 1E-06 48.1 15.8 139 213-390 347-498 (644)
374 PF05096 Glu_cyclase_2: Glutam 97.1 0.1 2.3E-06 42.5 21.3 118 82-234 41-161 (264)
375 COG3391 Uncharacterized conser 97.1 0.19 4.1E-06 44.5 23.1 195 95-349 83-286 (381)
376 PF12894 Apc4_WD40: Anaphase-p 97.1 0.003 6.6E-08 36.1 5.5 31 362-392 11-41 (47)
377 COG3386 Gluconolactonase [Carb 97.0 0.14 3.1E-06 43.4 17.7 169 50-275 78-264 (307)
378 KOG2079 Vacuolar assembly/sort 97.0 0.082 1.8E-06 50.9 17.2 100 100-231 101-204 (1206)
379 COG0823 TolB Periplasmic compo 97.0 0.089 1.9E-06 46.9 17.0 157 32-231 191-359 (425)
380 COG0823 TolB Periplasmic compo 96.9 0.084 1.8E-06 47.1 16.1 205 109-380 174-387 (425)
381 PHA03098 kelch-like protein; P 96.9 0.12 2.7E-06 48.1 18.0 72 273-355 436-520 (534)
382 COG3204 Uncharacterized protei 96.9 0.15 3.2E-06 41.9 15.5 164 31-231 83-264 (316)
383 PHA02790 Kelch-like protein; P 96.8 0.18 3.8E-06 46.2 18.0 174 177-393 288-471 (480)
384 PF05694 SBP56: 56kDa selenium 96.8 0.31 6.7E-06 42.7 21.3 236 100-381 89-392 (461)
385 KOG2444 WD40 repeat protein [G 96.8 0.0038 8.1E-08 48.7 5.8 103 100-231 72-178 (238)
386 PF05694 SBP56: 56kDa selenium 96.8 0.31 6.8E-06 42.6 19.4 277 48-335 86-393 (461)
387 KOG2079 Vacuolar assembly/sort 96.7 0.017 3.7E-07 55.2 10.4 110 266-391 90-202 (1206)
388 PRK13616 lipoprotein LpqB; Pro 96.7 0.24 5.2E-06 46.3 17.7 149 34-231 350-526 (591)
389 PRK13616 lipoprotein LpqB; Pro 96.7 0.15 3.2E-06 47.7 16.1 74 314-392 447-525 (591)
390 KOG2395 Protein involved in va 96.6 0.076 1.7E-06 47.0 12.7 134 175-346 355-500 (644)
391 COG4590 ABC-type uncharacteriz 96.5 0.024 5.3E-07 49.0 9.2 169 197-393 218-387 (733)
392 PF14583 Pectate_lyase22: Olig 96.5 0.49 1.1E-05 41.0 24.4 114 64-208 16-131 (386)
393 PF12894 Apc4_WD40: Anaphase-p 96.5 0.014 3.1E-07 33.4 5.3 35 82-120 10-44 (47)
394 PF08728 CRT10: CRT10; InterP 96.5 0.28 6E-06 46.1 16.3 172 212-391 49-245 (717)
395 KOG1897 Damage-specific DNA bi 96.4 0.96 2.1E-05 43.7 32.5 106 272-392 837-942 (1096)
396 PF12234 Rav1p_C: RAVE protein 96.4 0.14 3.1E-06 47.5 14.2 116 24-149 20-148 (631)
397 KOG1897 Damage-specific DNA bi 96.4 1 2.2E-05 43.5 20.3 179 60-295 752-944 (1096)
398 KOG4499 Ca2+-binding protein R 96.3 0.39 8.4E-06 38.1 16.8 97 131-276 160-264 (310)
399 PHA02790 Kelch-like protein; P 96.2 0.69 1.5E-05 42.4 17.8 52 176-231 331-385 (480)
400 PF14870 PSII_BNR: Photosynthe 96.0 0.78 1.7E-05 38.8 24.8 156 82-290 143-301 (302)
401 COG3204 Uncharacterized protei 96.0 0.74 1.6E-05 38.0 20.4 171 82-295 84-265 (316)
402 PF02897 Peptidase_S9_N: Proly 95.9 1.3 2.8E-05 39.8 31.2 256 90-393 128-405 (414)
403 PF08728 CRT10: CRT10; InterP 95.6 0.88 1.9E-05 43.0 15.4 152 49-229 49-245 (717)
404 PF10313 DUF2415: Uncharacteri 95.5 0.067 1.4E-06 29.7 4.9 31 363-393 1-34 (43)
405 KOG4499 Ca2+-binding protein R 95.4 1 2.3E-05 35.8 18.2 96 269-371 161-262 (310)
406 PF10313 DUF2415: Uncharacteri 95.4 0.08 1.7E-06 29.4 5.0 32 129-185 1-34 (43)
407 PF12234 Rav1p_C: RAVE protein 95.4 0.94 2E-05 42.3 14.7 106 275-390 41-154 (631)
408 PF15390 DUF4613: Domain of un 95.4 0.91 2E-05 41.3 14.0 120 264-391 55-185 (671)
409 KOG1916 Nuclear protein, conta 95.3 0.0034 7.4E-08 58.5 -0.8 171 29-234 128-327 (1283)
410 KOG2280 Vacuolar assembly/sort 95.3 2.7 5.8E-05 39.5 17.6 51 175-231 63-113 (829)
411 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 0.33 7.1E-06 42.9 10.9 95 21-126 295-408 (415)
412 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.8 3.4 7.3E-05 38.5 29.3 57 177-235 272-338 (527)
413 KOG3630 Nuclear pore complex, 94.8 0.33 7.1E-06 47.4 10.3 113 89-231 104-229 (1405)
414 KOG3630 Nuclear pore complex, 94.8 0.45 9.7E-06 46.5 11.2 153 200-380 101-261 (1405)
415 COG3823 Glutamine cyclotransfe 94.7 1.7 3.6E-05 34.0 14.7 28 48-75 55-85 (262)
416 COG3386 Gluconolactonase [Carb 94.6 2.5 5.5E-05 36.0 25.4 228 49-335 37-275 (307)
417 PF14727 PHTB1_N: PTHB1 N-term 94.4 3.6 7.7E-05 36.7 29.9 163 37-231 23-205 (418)
418 COG3292 Predicted periplasmic 94.3 4.2 9.1E-05 37.1 15.4 71 33-117 164-234 (671)
419 PRK10115 protease 2; Provision 94.2 5.6 0.00012 38.5 30.0 72 34-118 127-209 (686)
420 PLN02153 epithiospecifier prot 94.2 3.5 7.6E-05 36.0 22.6 12 285-296 217-228 (341)
421 COG3823 Glutamine cyclotransfe 94.2 2.2 4.7E-05 33.4 13.3 106 96-234 55-162 (262)
422 PF07569 Hira: TUP1-like enhan 94.1 0.44 9.4E-06 38.3 8.5 80 267-349 14-98 (219)
423 KOG2247 WD40 repeat-containing 94.1 0.0058 1.2E-07 53.2 -2.3 145 89-290 40-185 (615)
424 PF10647 Gmad1: Lipoprotein Lp 94.0 3.1 6.7E-05 34.4 14.5 149 35-222 25-187 (253)
425 KOG2280 Vacuolar assembly/sort 93.9 5.9 0.00013 37.4 16.8 34 314-349 216-249 (829)
426 PF05096 Glu_cyclase_2: Glutam 93.7 3.4 7.3E-05 34.0 25.7 167 23-233 33-206 (264)
427 TIGR03074 PQQ_membr_DH membran 93.7 7.5 0.00016 37.9 21.8 122 100-236 196-350 (764)
428 PF07995 GSDH: Glucose / Sorbo 93.6 4.5 9.8E-05 35.1 27.7 78 308-387 247-330 (331)
429 KOG2247 WD40 repeat-containing 93.6 0.0093 2E-07 51.9 -2.0 142 36-222 37-180 (615)
430 KOG1900 Nuclear pore complex, 93.5 3.2 6.9E-05 41.7 14.2 79 312-393 176-273 (1311)
431 COG5167 VID27 Protein involved 93.3 4.3 9.4E-05 36.5 13.4 137 175-346 489-632 (776)
432 PLN02193 nitrile-specifier pro 93.3 6.5 0.00014 36.1 19.1 63 329-393 330-411 (470)
433 KOG1916 Nuclear protein, conta 93.2 0.015 3.3E-07 54.5 -1.3 116 82-231 131-266 (1283)
434 PF14761 HPS3_N: Hermansky-Pud 93.2 3.4 7.5E-05 32.6 14.9 115 175-296 37-166 (215)
435 PF10168 Nup88: Nuclear pore c 93.1 5.9 0.00013 38.3 15.2 78 313-393 83-180 (717)
436 PF07569 Hira: TUP1-like enhan 92.8 0.89 1.9E-05 36.6 8.3 68 322-392 18-95 (219)
437 TIGR03547 muta_rot_YjhT mutatr 92.8 6.2 0.00013 34.5 21.1 42 339-384 291-332 (346)
438 PF14781 BBS2_N: Ciliary BBSom 92.7 2.8 6E-05 30.3 10.9 104 95-231 8-126 (136)
439 PLN02153 epithiospecifier prot 92.7 6.5 0.00014 34.3 19.9 54 338-393 217-285 (341)
440 TIGR03118 PEPCTERM_chp_1 conse 92.5 5.7 0.00012 33.3 18.9 213 130-392 24-279 (336)
441 PF14870 PSII_BNR: Photosynthe 92.3 6.4 0.00014 33.5 28.6 158 197-389 142-301 (302)
442 TIGR02276 beta_rpt_yvtn 40-res 92.2 1.1 2.5E-05 24.6 6.1 41 95-136 1-41 (42)
443 TIGR02604 Piru_Ver_Nterm putat 91.8 8.8 0.00019 33.9 15.9 156 200-383 14-204 (367)
444 PF02333 Phytase: Phytase; In 91.7 8.7 0.00019 33.7 21.3 193 175-393 77-291 (381)
445 PF12768 Rax2: Cortical protei 91.7 6.3 0.00014 33.1 12.1 78 59-145 17-105 (281)
446 KOG2377 Uncharacterized conser 91.5 4.8 0.0001 35.6 11.4 143 175-348 42-187 (657)
447 KOG1983 Tomosyn and related SN 91.5 6.3 0.00014 39.7 13.9 73 261-349 194-267 (993)
448 COG3490 Uncharacterized protei 91.4 7.4 0.00016 32.3 14.5 162 186-380 58-243 (366)
449 TIGR03074 PQQ_membr_DH membran 91.4 15 0.00033 35.9 23.5 75 50-125 195-287 (764)
450 PF14781 BBS2_N: Ciliary BBSom 91.3 4.2 9.2E-05 29.4 11.3 106 276-390 11-123 (136)
451 KOG1900 Nuclear pore complex, 91.3 3.3 7.3E-05 41.6 11.4 157 105-295 96-274 (1311)
452 PF10168 Nup88: Nuclear pore c 91.3 15 0.00033 35.6 17.6 81 33-118 84-181 (717)
453 COG5276 Uncharacterized conser 91.2 7.9 0.00017 32.3 23.2 159 127-348 85-243 (370)
454 PRK10115 protease 2; Provision 91.2 15 0.00033 35.6 29.3 114 91-231 132-256 (686)
455 PF15390 DUF4613: Domain of un 91.1 13 0.00027 34.4 24.3 117 84-231 57-187 (671)
456 COG5276 Uncharacterized conser 90.8 8.7 0.00019 32.0 28.7 278 33-392 86-369 (370)
457 COG5167 VID27 Protein involved 89.9 12 0.00026 33.8 12.4 152 95-294 477-633 (776)
458 PF14761 HPS3_N: Hermansky-Pud 89.5 2 4.4E-05 33.9 6.9 48 330-380 30-77 (215)
459 PRK13684 Ycf48-like protein; P 89.3 14 0.0003 32.2 21.7 155 83-292 172-330 (334)
460 TIGR03548 mutarot_permut cycli 89.3 13 0.00029 32.0 20.5 99 274-383 123-233 (323)
461 PF11635 Med16: Mediator compl 89.1 24 0.00053 34.7 18.2 118 221-341 212-345 (753)
462 KOG4460 Nuclear pore complex, 89.1 14 0.0003 33.6 12.3 76 316-393 105-199 (741)
463 PF10214 Rrn6: RNA polymerase 89.0 25 0.00054 34.7 24.0 32 199-230 145-176 (765)
464 TIGR03118 PEPCTERM_chp_1 conse 88.8 13 0.00029 31.3 22.3 250 87-372 26-307 (336)
465 PLN02193 nitrile-specifier pro 88.7 19 0.00042 33.1 23.5 24 273-296 327-354 (470)
466 KOG2377 Uncharacterized conser 88.4 18 0.00039 32.3 12.9 142 203-378 26-169 (657)
467 PF10647 Gmad1: Lipoprotein Lp 88.3 14 0.00029 30.7 20.4 160 130-342 25-192 (253)
468 PF02333 Phytase: Phytase; In 87.9 18 0.00039 31.8 24.0 200 39-295 59-292 (381)
469 KOG1898 Splicing factor 3b, su 87.7 32 0.00069 34.4 16.8 179 60-292 855-1047(1205)
470 PF12768 Rax2: Cortical protei 87.5 8.9 0.00019 32.2 9.9 103 107-231 15-124 (281)
471 PLN00033 photosystem II stabil 87.5 21 0.00045 31.9 16.7 153 33-227 238-396 (398)
472 COG4590 ABC-type uncharacteriz 87.4 1.8 3.9E-05 38.1 5.9 166 29-233 216-389 (733)
473 TIGR03548 mutarot_permut cycli 87.3 18 0.0004 31.2 16.9 25 272-296 169-197 (323)
474 PRK14131 N-acetylneuraminic ac 87.3 21 0.00045 31.7 20.5 40 340-383 314-353 (376)
475 TIGR02276 beta_rpt_yvtn 40-res 87.2 3.2 6.8E-05 22.7 5.2 19 175-193 13-31 (42)
476 COG4257 Vgb Streptogramin lyas 86.8 17 0.00036 30.2 20.0 225 93-390 69-303 (353)
477 PF11715 Nup160: Nucleoporin N 86.5 9.7 0.00021 35.8 10.9 65 329-393 159-249 (547)
478 smart00564 PQQ beta-propeller 86.4 2 4.3E-05 22.0 3.8 26 167-192 7-32 (33)
479 PF14727 PHTB1_N: PTHB1 N-term 86.0 26 0.00055 31.5 27.5 142 3-149 39-194 (418)
480 PF03022 MRJP: Major royal jel 85.1 22 0.00048 30.1 15.3 198 176-380 34-253 (287)
481 KOG3611 Semaphorins [Signal tr 83.7 13 0.00029 35.9 10.3 75 314-388 407-489 (737)
482 PF08801 Nucleoporin_N: Nup133 82.9 36 0.00078 30.8 15.8 30 363-392 190-219 (422)
483 KOG4460 Nuclear pore complex, 82.9 38 0.00082 31.0 14.5 28 200-228 104-131 (741)
484 PF07676 PD40: WD40-like Beta 81.5 6.4 0.00014 21.1 4.7 28 315-343 9-38 (39)
485 COG5308 NUP170 Nuclear pore co 80.9 42 0.00092 33.0 12.0 163 105-295 99-277 (1263)
486 PF12341 DUF3639: Protein of u 80.8 5.3 0.00011 19.7 3.8 26 266-291 2-27 (27)
487 PF11715 Nup160: Nucleoporin N 80.6 25 0.00054 33.1 11.0 30 97-126 229-258 (547)
488 PRK13684 Ycf48-like protein; P 79.7 41 0.00089 29.3 30.4 153 199-390 172-329 (334)
489 PF01731 Arylesterase: Arylest 79.5 9.1 0.0002 25.4 5.5 31 363-393 54-85 (86)
490 PF01011 PQQ: PQQ enzyme repea 79.3 5.3 0.00012 21.5 3.8 25 169-193 3-27 (38)
491 PF01436 NHL: NHL repeat; Int 79.1 6.1 0.00013 19.5 4.1 26 364-389 3-28 (28)
492 PF01011 PQQ: PQQ enzyme repea 78.8 8.1 0.00018 20.7 4.4 27 100-126 2-28 (38)
493 KOG2063 Vacuolar assembly/sort 78.1 77 0.0017 31.6 14.4 23 95-118 24-46 (877)
494 PF12657 TFIIIC_delta: Transcr 77.7 30 0.00065 26.6 9.5 30 363-392 86-121 (173)
495 PRK14131 N-acetylneuraminic ac 77.5 52 0.0011 29.2 19.3 42 176-220 189-230 (376)
496 PF03088 Str_synth: Strictosid 77.3 10 0.00022 25.4 5.3 51 334-389 33-85 (89)
497 PF07995 GSDH: Glucose / Sorbo 75.4 55 0.0012 28.5 14.6 47 87-138 5-58 (331)
498 PF08801 Nucleoporin_N: Nup133 75.2 64 0.0014 29.2 13.3 31 200-231 190-220 (422)
499 PF13449 Phytase-like: Esteras 74.0 59 0.0013 28.2 16.4 107 270-379 89-231 (326)
500 KOG3522 Predicted guanine nucl 73.6 18 0.00039 34.9 7.6 149 213-392 548-697 (925)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-54 Score=342.14 Aligned_cols=315 Identities=20% Similarity=0.311 Sum_probs=282.1
Q ss_pred ceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEE
Q 016185 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (394)
Q Consensus 24 ~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (394)
.....+.||.++|.|++|+| +|..||+|+.|. +++||+.+..++.+++ +|..-|.+++|+ |||+ .||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp----~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-----gH~~WVlcvaws--PDgk-~iA 173 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSP----TGSRLVTGSGDTTVRLWDLDTETPLFTCK-----GHKNWVLCVAWS--PDGK-KIA 173 (480)
T ss_pred eeccccCCCCCcEEEEEecC----CCceEEecCCCceEEeeccCCCCcceeec-----CCccEEEEEEEC--CCcc-hhh
Confidence 34556789999999999999 799999999998 9999999999999998 789999999999 9999 999
Q ss_pred EeecCCeEEEEECCCCee-EEEEEecCCceeEEEEcCC----CCcEEEEcee--eeEEeec--------------cceee
Q 016185 103 AGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPL----KPSLVVSASK--VIIISSL--------------SLICL 161 (394)
Q Consensus 103 s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~--~i~~~~~--------------~~~~~ 161 (394)
+|+.||.|++||.+++++ .+.+.+|...|++++|.|- ...+|++++. .+++|+. ++.|+
T Consensus 174 SG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred ccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence 999999999999998865 5688999999999999873 3468888887 8999987 33555
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecC--------------------------------
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP-------------------------------- 209 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------------------- 209 (394)
.+-.++.+++|+.|++|++|+...|.+.+.++ +|...|+.++.+.
T Consensus 254 rwGG~gliySgS~DrtIkvw~a~dG~~~r~lk---GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 254 RWGGEGLIYSGSQDRTIKVWRALDGKLCRELK---GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred EEcCCceEEecCCCceEEEEEccchhHHHhhc---ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 55567889999999999999999999999998 8999999998872
Q ss_pred ---CCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecC
Q 016185 210 ---SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD 284 (394)
Q Consensus 210 ---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d 284 (394)
+.+..|++|+.|.++.+|+.... .+|+..+.+|...|..+.|+ ++++++++.|
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~----------------------kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKS----------------------KKPITRMTGHQALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred hhccCcceeEEecCCceEEEeccccc----------------------ccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence 12345999999999999998773 35788899999999999998 7899999999
Q ss_pred CeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCC
Q 016185 285 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 364 (394)
Q Consensus 285 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (394)
..|++||.++++ .+..+++|-..|+.++|+.|. ++|++|+.|.++++|++++. ++...++ +|...
T Consensus 389 kSVkLW~g~tGk---------~lasfRGHv~~VYqvawsaDs--RLlVS~SkDsTLKvw~V~tk--Kl~~DLp--Gh~DE 453 (480)
T KOG0271|consen 389 KSVKLWDGRTGK---------FLASFRGHVAAVYQVAWSADS--RLLVSGSKDSTLKVWDVRTK--KLKQDLP--GHADE 453 (480)
T ss_pred cceeeeeCCCcc---------hhhhhhhccceeEEEEeccCc--cEEEEcCCCceEEEEEeeee--eecccCC--CCCce
Confidence 999999999998 789999999999999999999 79999999999999999997 4666777 99999
Q ss_pred eeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 365 IRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 365 v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
|.++.|+|||..+++|+.|..+++|.
T Consensus 454 Vf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999994
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-49 Score=317.15 Aligned_cols=284 Identities=19% Similarity=0.301 Sum_probs=261.9
Q ss_pred ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCC
Q 016185 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (394)
Q Consensus 30 ~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 108 (394)
-+-+.+|..+.||+ +++.||||+-++ ++||+..+...+..+. +|...+.++.|.+..++. .+++|+.||
T Consensus 172 ~gd~rPis~~~fS~----ds~~laT~swsG~~kvW~~~~~~~~~~l~-----gH~~~v~~~~fhP~~~~~-~lat~s~Dg 241 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR----DSKHLATGSWSGLVKVWSVPQCNLLQTLR-----GHTSRVGAAVFHPVDSDL-NLATASADG 241 (459)
T ss_pred ccCCCcceeeEeec----CCCeEEEeecCCceeEeecCCcceeEEEe-----ccccceeeEEEccCCCcc-ceeeeccCC
Confidence 35678999999998 799999999999 9999999998888888 788999999998332344 899999999
Q ss_pred eEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE
Q 016185 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC 188 (394)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 188 (394)
++++|++.+..++..+.+|...|..++|+| ++.+|+|++. |.+-++||++++..
T Consensus 242 tvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~Tasf-------------------------D~tWRlWD~~tk~E 295 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASF-------------------------DSTWRLWDLETKSE 295 (459)
T ss_pred ceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeeccc-------------------------ccchhhcccccchh
Confidence 999999999999999999999999999999 8999999999 99999999999988
Q ss_pred EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCce
Q 016185 189 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 268 (394)
Q Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 268 (394)
+.... +|...|.+++|+| ||.++++|+.|..-++||+++ ...+..+.+|...|
T Consensus 296 lL~QE---GHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt-----------------------gr~im~L~gH~k~I 348 (459)
T KOG0272|consen 296 LLLQE---GHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT-----------------------GRCIMFLAGHIKEI 348 (459)
T ss_pred hHhhc---ccccccceeEecC-CCceeeccCccchhheeeccc-----------------------CcEEEEecccccce
Confidence 87777 9999999999999 999999999999999999999 45688999999999
Q ss_pred EEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEec
Q 016185 269 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 269 ~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (394)
.+|+|+ |..+++|+.|++++|||++... .+..++.|.+-|+.++|+|... .+|++++.|++++||.-.
T Consensus 349 ~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~---------~ly~ipAH~nlVS~Vk~~p~~g-~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 349 LSVAFSPNGYHLATGSSDNTCKVWDLRMRS---------ELYTIPAHSNLVSQVKYSPQEG-YFLVTASYDNTVKIWSTR 418 (459)
T ss_pred eeEeECCCceEEeecCCCCcEEEeeecccc---------cceecccccchhhheEecccCC-eEEEEcccCcceeeecCC
Confidence 999998 7799999999999999999876 5888999999999999999433 799999999999999988
Q ss_pred CCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 347 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
+.. ++..+. ||.+.|.++++++|+.++++++.|.++++|.
T Consensus 419 ~~~--~~ksLa--GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 TWS--PLKSLA--GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred Ccc--cchhhc--CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 874 677887 9999999999999999999999999999995
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.9e-47 Score=291.77 Aligned_cols=295 Identities=19% Similarity=0.321 Sum_probs=259.8
Q ss_pred ccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCC
Q 016185 18 SKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD 96 (394)
Q Consensus 18 ~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (394)
-..-.++..++|+||.+.|+++.|++ +.+++++++.|+ +.|||..+....+.++ -...-|..++++ |.
T Consensus 40 ~~~i~~~~rr~LkGH~~Ki~~~~ws~----Dsr~ivSaSqDGklIvWDs~TtnK~haip-----l~s~WVMtCA~s--PS 108 (343)
T KOG0286|consen 40 VGRIQMRTRRTLKGHLNKIYAMDWST----DSRRIVSASQDGKLIVWDSFTTNKVHAIP-----LPSSWVMTCAYS--PS 108 (343)
T ss_pred ceeeeeeeEEEecccccceeeeEecC----CcCeEEeeccCCeEEEEEcccccceeEEe-----cCceeEEEEEEC--CC
Confidence 34456778899999999999999999 789999999999 9999999988877776 344455555555 99
Q ss_pred CCcEEEEeecCCeEEEEECCCC------eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeecccee
Q 016185 97 GIPFLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCL 170 (394)
Q Consensus 97 ~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~ 170 (394)
|+ ++|+|+.|+...||++.+. +..+.+.+|.+.+.|+.|.+ + ..|++++.
T Consensus 109 g~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D-~~ilT~SG--------------------- 164 (343)
T KOG0286|consen 109 GN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-D-NHILTGSG--------------------- 164 (343)
T ss_pred CC-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-C-CceEecCC---------------------
Confidence 99 9999999999999999854 45677889999999999987 4 57778888
Q ss_pred eeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCC
Q 016185 171 RVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 250 (394)
Q Consensus 171 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 250 (394)
|.+..+||+++++.+..|. +|.+.|.++.+.|.+++.|++|+.|+..++||++.
T Consensus 165 ----D~TCalWDie~g~~~~~f~---GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~------------------- 218 (343)
T KOG0286|consen 165 ----DMTCALWDIETGQQTQVFH---GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS------------------- 218 (343)
T ss_pred ----CceEEEEEcccceEEEEec---CCcccEEEEecCCCCCCeEEecccccceeeeeccC-------------------
Confidence 9999999999999999999 99999999999998899999999999999999999
Q ss_pred ccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCc
Q 016185 251 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 328 (394)
Q Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 328 (394)
...+..+.+|...|.++.|. |.-+++|+.|++.++||++..++. .+........+|++++||..|
T Consensus 219 ----~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-------a~ys~~~~~~gitSv~FS~SG-- 285 (343)
T KOG0286|consen 219 ----GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-------AVYSHDSIICGITSVAFSKSG-- 285 (343)
T ss_pred ----cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-------eeeccCcccCCceeEEEcccc--
Confidence 55688999999999999997 889999999999999999987631 223334455789999999999
Q ss_pred ceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 329 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
++|++|..|..+.+||.-.++ .+..+. +|...|+++..+|||..+++||+|..++||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e--~vg~L~--GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGE--RVGVLA--GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccc--eEEEee--ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 799999999999999998884 566777 9999999999999999999999999999994
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-46 Score=296.88 Aligned_cols=267 Identities=21% Similarity=0.297 Sum_probs=235.9
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEcee--eeEEeec--
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--VIIISSL-- 156 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--~i~~~~~-- 156 (394)
+|.++|.++.|+ |+|. .|++|+.|.++++||+.+..+..+.++|...|.|++|+| ++..|++|+. .|.+|+.
T Consensus 113 GH~e~Vl~~~fs--p~g~-~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 113 GHGEAVLSVQFS--PTGS-RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred CCCCcEEEEEec--CCCc-eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCC
Confidence 799999998888 8999 999999999999999999999999999999999999999 8899999998 9999995
Q ss_pred -------------cceeeeeee------ccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEe
Q 016185 157 -------------SLICLLLFI------RSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 217 (394)
Q Consensus 157 -------------~~~~~~~~~------~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s 217 (394)
.+.++.+.+ .+.+++++.||.|+|||+..++++..+. +|+.+|+|+.|- ...++++
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls---gHT~~VTCvrwG--G~gliyS 263 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS---GHTASVTCVRWG--GEGLIYS 263 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec---cCccceEEEEEc--CCceEEe
Confidence 113333332 3578888899999999999999999998 999999999997 4678999
Q ss_pred eccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe-------------C---------
Q 016185 218 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------------G--------- 275 (394)
Q Consensus 218 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~--------- 275 (394)
|+.|++|++|+...+ .....+.+|...|..++.+ +
T Consensus 264 gS~DrtIkvw~a~dG-----------------------~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDG-----------------------KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred cCCCceEEEEEccch-----------------------hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 999999999999883 3456667777777766654 2
Q ss_pred ----------------cEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCc
Q 016185 276 ----------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 339 (394)
Q Consensus 276 ----------------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 339 (394)
..+++|+.|.++.+|+....++ ++.+..+|..-|+.+.|+||+ +++|+++.|.+
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--------pi~rmtgHq~lVn~V~fSPd~--r~IASaSFDkS 390 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--------PITRMTGHQALVNHVSFSPDG--RYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--------chhhhhchhhheeeEEECCCc--cEEEEeecccc
Confidence 3499999999999999876654 688899999999999999999 79999999999
Q ss_pred EEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 340 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
|++||.++++ .+..|. +|-++|..++|+.|.++|++||.|.++++|++++
T Consensus 391 VkLW~g~tGk--~lasfR--GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 391 VKLWDGRTGK--FLASFR--GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred eeeeeCCCcc--hhhhhh--hccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 9999999994 778888 9999999999999999999999999999999975
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7e-44 Score=272.21 Aligned_cols=297 Identities=21% Similarity=0.316 Sum_probs=244.5
Q ss_pred ccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC-----ceeEEeeecccCCcccceEEEEEEEcC
Q 016185 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-----GVIAALQSYVDEDKEESFYTVSWACNV 95 (394)
Q Consensus 22 ~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (394)
.+.+..++++|++.|+.++..+. +.+.+++++.|. +.+|++... ..++.+. +|...|..+..+ +
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-----GHsH~v~dv~~s--~ 73 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-----GHSHFVSDVVLS--S 73 (315)
T ss_pred hheeeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEeccCccccCceeeeee-----ccceEecceEEc--c
Confidence 45677789999999999999983 578999999999 999998753 3455555 688889999888 9
Q ss_pred CCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccC
Q 016185 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQD 175 (394)
Q Consensus 96 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d 175 (394)
+|+ +.++++.|+++++||+.+++..+.|.+|...|.+++|++ +...+++|+. |
T Consensus 74 dg~-~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSr-------------------------D 126 (315)
T KOG0279|consen 74 DGN-FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSR-------------------------D 126 (315)
T ss_pred CCc-eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCC-------------------------c
Confidence 999 999999999999999999999999999999999999999 7799999999 9
Q ss_pred CcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCC-CeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccc
Q 016185 176 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 254 (394)
Q Consensus 176 ~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (394)
.+|++|++.. .+..++.. ..+.+.|+|+.|+|.. ...|++++.|++|++||+++.
T Consensus 127 kTiklwnt~g-~ck~t~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~---------------------- 182 (315)
T KOG0279|consen 127 KTIKLWNTLG-VCKYTIHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC---------------------- 182 (315)
T ss_pred ceeeeeeecc-cEEEEEec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc----------------------
Confidence 9999999864 44444442 1237899999999932 678999999999999999993
Q ss_pred ccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEE
Q 016185 255 QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 332 (394)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 332 (394)
+....+.+|...++.++++ |.++++|+.||.+.+||++.++ .+..+ .+...|.+++|+|+. +.+
T Consensus 183 -~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k---------~lysl-~a~~~v~sl~fspnr---ywL 248 (315)
T KOG0279|consen 183 -QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK---------NLYSL-EAFDIVNSLCFSPNR---YWL 248 (315)
T ss_pred -chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc---------eeEec-cCCCeEeeEEecCCc---eeE
Confidence 3455778899999999998 8899999999999999999887 34433 355689999999997 445
Q ss_pred EEeCCCcEEEEEecCCCceeeEEeccCCc-----cCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 333 IGNREGKIFVWELQSSPPVLIARLSHAQS-----KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+...+..|+|||+.++.......++..+. .....+++|++||..|.+|-.|+.|++|.+..
T Consensus 249 ~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 249 CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 55556679999999885332222222122 23457789999999999999999999999853
No 6
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-43 Score=268.16 Aligned_cols=299 Identities=17% Similarity=0.268 Sum_probs=246.5
Q ss_pred cceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEE
Q 016185 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (394)
Q Consensus 23 ~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (394)
+...+.+++|.++|..++|+|. .|.+||+|+.|+ |++|+...+.. -.++......|+..|..++|+ |.|+ +|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~---~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAws--p~g~-~L 76 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPG---KGVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWS--PHGR-YL 76 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccC---CceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeec--CCCc-EE
Confidence 3456778999999999999991 277999999999 99999876433 344445556899999999999 9999 99
Q ss_pred EEeecCCeEEEEECCCC--eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 102 VAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 102 ~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
++++.|.++.||.-..+ +++.++.+|..+|.+++|++ ++++||++++ |++|-
T Consensus 77 a~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSR-------------------------DKSVW 130 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSR-------------------------DKSVW 130 (312)
T ss_pred EEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeC-------------------------CCeEE
Confidence 99999999999986544 78899999999999999999 8899999999 99999
Q ss_pred EEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee
Q 016185 180 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 259 (394)
Q Consensus 180 vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (394)
||.+..+........+.+|...|..+.|+| ...+|+++++|.+|++|+-..... -....
T Consensus 131 iWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ddd--------------------W~c~~ 189 (312)
T KOG0645|consen 131 IWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDD--------------------WECVQ 189 (312)
T ss_pred EEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCC--------------------eeEEE
Confidence 999986654444444448999999999999 999999999999999998773110 34577
Q ss_pred eeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCC
Q 016185 260 IASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 337 (394)
Q Consensus 260 ~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 337 (394)
++.+|.+.|.+++|+ |..|++++.|++++||-+...- ...|...++.++|. ++ .+++++.|
T Consensus 190 tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~-------------~~~~sr~~Y~v~W~-~~---~IaS~ggD 252 (312)
T KOG0645|consen 190 TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL-------------SGMHSRALYDVPWD-NG---VIASGGGD 252 (312)
T ss_pred EecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc-------------chhcccceEeeeec-cc---ceEeccCC
Confidence 899999999999998 8899999999999999866331 12345678889998 55 89999999
Q ss_pred CcEEEEEecCCC--ceeeEEe-ccCCccCCeeEEEeccC-CCEEEEeccCCeEEEEEcC
Q 016185 338 GKIFVWELQSSP--PVLIARL-SHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 338 g~i~iwd~~~~~--~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~ 392 (394)
+.|++|.-.... +...... ....|...|++++|+|. .++|++|+.||.|++|.+.
T Consensus 253 ~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 253 DAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999999877531 1111111 13478889999999995 7899999999999999985
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.6e-45 Score=291.84 Aligned_cols=264 Identities=25% Similarity=0.384 Sum_probs=239.8
Q ss_pred eecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcc
Q 016185 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE 83 (394)
Q Consensus 5 a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~ 83 (394)
++|+=.+.. -.|..+......+|.+|...|.++.|+|.+ ++.-+|||+.|+ +++|++.....+..+. +|.
T Consensus 191 aT~swsG~~--kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~~l~~l~-----gH~ 261 (459)
T KOG0272|consen 191 ATGSWSGLV--KVWSVPQCNLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQETPLQDLE-----GHL 261 (459)
T ss_pred EEeecCCce--eEeecCCcceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCcchhhhh-----cch
Confidence 344444443 344556668888999999999999999943 367899999999 9999999888888888 677
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeee
Q 016185 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLL 163 (394)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~ 163 (394)
..|..++|. |+|+ +|+|++.|.+-++||+.++..+....||...|.+++|+| ++.+++||+.
T Consensus 262 ~RVs~VafH--PsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGl-------------- 323 (459)
T KOG0272|consen 262 ARVSRVAFH--PSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGL-------------- 323 (459)
T ss_pred hhheeeeec--CCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCc--------------
Confidence 888888877 9999 999999999999999999999888899999999999999 8899999999
Q ss_pred eeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccC
Q 016185 164 FIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 243 (394)
Q Consensus 164 ~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 243 (394)
|..-+|||+++|+++..+. +|..+|.+++|+| +|..|+||+.|++++|||++.
T Consensus 324 -----------D~~~RvWDlRtgr~im~L~---gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~------------ 376 (459)
T KOG0272|consen 324 -----------DSLGRVWDLRTGRCIMFLA---GHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRM------------ 376 (459)
T ss_pred -----------cchhheeecccCcEEEEec---ccccceeeEeECC-CceEEeecCCCCcEEEeeecc------------
Confidence 9999999999999999998 8999999999999 999999999999999999999
Q ss_pred CCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE
Q 016185 244 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 320 (394)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (394)
...+..+.+|.+-|+.|.|+ |.+|++++.|+++++|..++.. +++.+.+|+..|.++
T Consensus 377 -----------r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~---------~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 377 -----------RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS---------PLKSLAGHEGKVISL 436 (459)
T ss_pred -----------cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc---------cchhhcCCccceEEE
Confidence 45688999999999999998 7899999999999999999877 799999999999999
Q ss_pred EEeecCCcceEEEEeCCCcEEEEE
Q 016185 321 KFSCDFHYNAAAIGNREGKIFVWE 344 (394)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg~i~iwd 344 (394)
.+++++ .++++++.|+++++|.
T Consensus 437 Dis~d~--~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDS--QAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCC--ceEEEeccCceeeecc
Confidence 999999 5899999999999995
No 8
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.8e-42 Score=265.33 Aligned_cols=293 Identities=20% Similarity=0.359 Sum_probs=253.9
Q ss_pred cceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCC-CceeEEeeecccCCcccceEEEEEEEcCCCCcE
Q 016185 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 23 ~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (394)
..+...+.+|.+.|+.+.|+| +|.+||+|+.|+ |.+|+... .+....++ +|.+.|..+.|. +|+. .
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P----~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-----gHsgAVM~l~~~--~d~s-~ 104 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHP----DGSCFASGGSDRAIVLWNVYGDCENFWVLK-----GHSGAVMELHGM--RDGS-H 104 (338)
T ss_pred cchhhhcCCCcceEEEEEECC----CCCeEeecCCcceEEEEeccccccceeeec-----cccceeEeeeec--cCCC-E
Confidence 345556789999999999999 799999999999 99999553 33444455 799999999998 9999 9
Q ss_pred EEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEE
Q 016185 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRL 180 (394)
Q Consensus 101 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 180 (394)
|++++.|.+|+.||+++|+..+.+++|...|+.+.-+..+..++.+++. |+++++
T Consensus 105 i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd-------------------------D~t~kl 159 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSD-------------------------DGTLKL 159 (338)
T ss_pred EEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCC-------------------------CceEEE
Confidence 9999999999999999999999999999999999866656788999999 999999
Q ss_pred EEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceee
Q 016185 181 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 260 (394)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (394)
||+++...++.+. .+-+++++.|.. .+..+.+|+-|+.|++||++. ......
T Consensus 160 ~D~R~k~~~~t~~----~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~-----------------------~d~~~~ 211 (338)
T KOG0265|consen 160 WDIRKKEAIKTFE----NKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK-----------------------NDGLYT 211 (338)
T ss_pred Eeecccchhhccc----cceeEEEEEecc-cccceeeccccCceeeecccc-----------------------CcceEE
Confidence 9999999998886 677899999998 888999999999999999998 456889
Q ss_pred eecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCC----CCeEEEEEeecCCcceEEEE
Q 016185 261 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE----CDIWFIKFSCDFHYNAAAIG 334 (394)
Q Consensus 261 ~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~~~ 334 (394)
+.+|.+.|+.+..+ |.++++-+.|.++++||++.... ..+++..+.++. .....++|+|++ ..+.+|
T Consensus 212 lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-----~~R~v~if~g~~hnfeknlL~cswsp~~--~~i~ag 284 (338)
T KOG0265|consen 212 LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-----SQRCVKIFQGHIHNFEKNLLKCSWSPNG--TKITAG 284 (338)
T ss_pred eecccCceeeEEeccCCCccccccccceEEEEEecccCC-----CCceEEEeecchhhhhhhcceeeccCCC--Cccccc
Confidence 99999999999997 89999999999999999986542 222355555442 345678899999 689999
Q ss_pred eCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 335 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
+.|..+++||.... ..+..++ +|.+.|+.++|+|...+|.+++.|.+|++=.+
T Consensus 285 s~dr~vyvwd~~~r--~~lyklp--Gh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 285 SADRFVYVWDTTSR--RILYKLP--GHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred cccceEEEeecccc--cEEEEcC--CcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 99999999999876 4677777 99999999999999999999999999987443
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=255.23 Aligned_cols=276 Identities=16% Similarity=0.269 Sum_probs=235.0
Q ss_pred cceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCe--eEEEE
Q 016185 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSF 124 (394)
Q Consensus 48 ~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~ 124 (394)
+.-+||+++.|. |++|...+|.+..+++ ..+..|+.+.+. |+++ .||+++. ..|++||+.++. ++.++
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiq-----h~dsqVNrLeiT--pdk~-~LAaa~~-qhvRlyD~~S~np~Pv~t~ 79 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQ-----HPDSQVNRLEIT--PDKK-DLAAAGN-QHVRLYDLNSNNPNPVATF 79 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEe-----cCccceeeEEEc--CCcc-hhhhccC-CeeEEEEccCCCCCceeEE
Confidence 457999999998 9999999999999998 567789989888 9998 7777774 579999998764 68999
Q ss_pred EecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEE
Q 016185 125 VGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLS 204 (394)
Q Consensus 125 ~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~ 204 (394)
.+|.+.|.++.|.. +++.+++|++ ||+++|||++...+.+.+. |..+|++
T Consensus 80 e~h~kNVtaVgF~~-dgrWMyTgse-------------------------Dgt~kIWdlR~~~~qR~~~----~~spVn~ 129 (311)
T KOG0315|consen 80 EGHTKNVTAVGFQC-DGRWMYTGSE-------------------------DGTVKIWDLRSLSCQRNYQ----HNSPVNT 129 (311)
T ss_pred eccCCceEEEEEee-cCeEEEecCC-------------------------CceEEEEeccCcccchhcc----CCCCcce
Confidence 99999999999999 8899999999 9999999999987777776 8899999
Q ss_pred EEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEE--eCcEEEEee
Q 016185 205 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKS 282 (394)
Q Consensus 205 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~ 282 (394)
+..+| +...|++|..+|.|++||+....... ..+......|.++.. +|.+++.+.
T Consensus 130 vvlhp-nQteLis~dqsg~irvWDl~~~~c~~----------------------~liPe~~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 130 VVLHP-NQTELISGDQSGNIRVWDLGENSCTH----------------------ELIPEDDTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred EEecC-CcceEEeecCCCcEEEEEccCCcccc----------------------ccCCCCCcceeeEEEcCCCcEEEEec
Confidence 99999 88889999999999999999832110 011122234444444 399999999
Q ss_pred cCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCcc
Q 016185 283 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK 362 (394)
Q Consensus 283 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (394)
..|+..+|++-+... .....++.+++.|+.-+..+.+||++ .+||+++.|.+++||+.++. .+....++ +|.
T Consensus 187 nkG~cyvW~l~~~~~---~s~l~P~~k~~ah~~~il~C~lSPd~--k~lat~ssdktv~iwn~~~~-~kle~~l~--gh~ 258 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQT---ASELEPVHKFQAHNGHILRCLLSPDV--KYLATCSSDKTVKIWNTDDF-FKLELVLT--GHQ 258 (311)
T ss_pred CCccEEEEEccCCCc---cccceEhhheecccceEEEEEECCCC--cEEEeecCCceEEEEecCCc-eeeEEEee--cCC
Confidence 999999999987542 23455788899999999999999999 79999999999999999887 34555666 899
Q ss_pred CCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 363 SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 363 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
..+.+++||.||+||++|+.|+.+++|+++.
T Consensus 259 rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred ceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 9999999999999999999999999999864
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-42 Score=273.24 Aligned_cols=291 Identities=19% Similarity=0.331 Sum_probs=263.3
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCc
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (394)
++..+...+.+|..+|+.+-|+| +-.+++++++|. |++||..+++....++ +|...+..++|. ..|+
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp----~~~~v~~as~d~tikv~D~~tg~~e~~Lr-----GHt~sv~di~~~--a~Gk- 163 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHP----SEALVVSASEDATIKVFDTETGELERSLR-----GHTDSVFDISFD--ASGK- 163 (406)
T ss_pred CCCCchhhhhccccceeeeeecc----CceEEEEecCCceEEEEEccchhhhhhhh-----ccccceeEEEEe--cCcc-
Confidence 44556677889999999999999 688999999998 9999999999988888 677888888877 8899
Q ss_pred EEEEeecCCeEEEEECCC-CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcE
Q 016185 100 FLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESV 178 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (394)
+|++++.|-.+++||.++ .++++.+.+|...|.+++|-| .+..+++++. |.+|
T Consensus 164 ~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~sr-------------------------D~ti 217 (406)
T KOG0295|consen 164 YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSR-------------------------DNTI 217 (406)
T ss_pred EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeeccc-------------------------ccce
Confidence 999999999999999886 577888899999999999999 6799999999 9999
Q ss_pred EEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccce
Q 016185 179 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 258 (394)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
+.|++.+|.++.++. +|...|..+..+. ||.++++++.|.+|++|-+.+. ...
T Consensus 218 k~We~~tg~cv~t~~---~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~-----------------------~~k 270 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFP---GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATK-----------------------QCK 270 (406)
T ss_pred eEEecccceeEEecc---CchHhEEEEEecC-CeeEEEecCCCceEEEEEeccc-----------------------hhh
Confidence 999999999999999 8999999999998 9999999999999999999993 345
Q ss_pred eeeecCCCceEEEEEe------------C-----cEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEE
Q 016185 259 FIASVHSNYVDCNRWL------------G-----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 321 (394)
Q Consensus 259 ~~~~~~~~~i~~~~~~------------~-----~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 321 (394)
..+..|..+|.+++|. | +++.+++.|++|++||+.++. ++.++.+|...|..++
T Consensus 271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---------cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---------CLFTLVGHDNWVRGVA 341 (406)
T ss_pred hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe---------EEEEEecccceeeeeE
Confidence 5667788888888872 2 499999999999999999887 8999999999999999
Q ss_pred EeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 322 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 322 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
|+|.| .||+++.+|+++++||+++. ++...++ .|...|++++|+.+..++++|+-|..+++|.-
T Consensus 342 f~p~G--kyi~ScaDDktlrvwdl~~~--~cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 342 FSPGG--KYILSCADDKTLRVWDLKNL--QCMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EcCCC--eEEEEEecCCcEEEEEeccc--eeeeccC--CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999 69999999999999999998 4677777 88899999999999999999999999999974
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7e-42 Score=279.05 Aligned_cols=289 Identities=21% Similarity=0.350 Sum_probs=250.8
Q ss_pred cCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCcee----EEeee-----cccCCcccceEEEEEEEcCCCCcE
Q 016185 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI----AALQS-----YVDEDKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~----~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~ 100 (394)
.|..+|.+++|+|. ...++|+++.+. .++|++...... ..++. -........|++++|+ .+|. +
T Consensus 176 ~~~~~V~~~~WnP~---~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn--~~G~-~ 249 (524)
T KOG0273|consen 176 RHESEVFICAWNPL---RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN--NDGT-L 249 (524)
T ss_pred cCCCceEEEecCch---hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec--CCCC-e
Confidence 39999999999993 344899998887 999998752111 11110 0111345789999999 8899 9
Q ss_pred EEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEE
Q 016185 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRL 180 (394)
Q Consensus 101 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 180 (394)
||+|+.||.+++|+ .++..+.++..|.++|.++.|+. .+++|++++. |+++.+
T Consensus 250 LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~v-------------------------D~ttil 302 (524)
T KOG0273|consen 250 LATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGV-------------------------DGTTIL 302 (524)
T ss_pred EEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcC-CCCEEEeccC-------------------------CccEEE
Confidence 99999999999999 47888999999999999999999 8899999999 999999
Q ss_pred EEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceee
Q 016185 181 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 260 (394)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (394)
||..+|+..+.+. -|..+-..+.|- +...|++++.|+.|+++.+.. ..|+.+
T Consensus 303 wd~~~g~~~q~f~---~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~-----------------------~~P~~t 354 (524)
T KOG0273|consen 303 WDAHTGTVKQQFE---FHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGE-----------------------DRPVKT 354 (524)
T ss_pred EeccCceEEEeee---eccCCccceEEe--cCceEeecCCCceEEEEEecC-----------------------CCccee
Confidence 9999999988888 687777889997 556699999999999999988 678999
Q ss_pred eecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCC-------cceE
Q 016185 261 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-------YNAA 331 (394)
Q Consensus 261 ~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~l 331 (394)
+.+|.+.|.++.|+ +.+|++++.|+++++|.+.... ....+..|...|+.+.|+|.+. ...+
T Consensus 355 ~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~---------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l 425 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN---------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML 425 (524)
T ss_pred eecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc---------chhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence 99999999999999 8999999999999999987665 6788899999999999999865 2579
Q ss_pred EEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 332 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 332 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
++++.|++|++||+..+ .++..|. .|..+|.+++|+|+|++||+|+.||.|++|++++
T Consensus 426 ~sas~dstV~lwdv~~g--v~i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVESG--VPIHTLM--KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred EEeecCCeEEEEEccCC--ceeEeec--cCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 99999999999999998 4677777 8999999999999999999999999999999864
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.5e-41 Score=276.64 Aligned_cols=363 Identities=16% Similarity=0.172 Sum_probs=260.8
Q ss_pred eeeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCC
Q 016185 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (394)
Q Consensus 3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~ 81 (394)
|.+.|.++..+.++ +.+||++...++.|..-|+|+.|+| ||+++|+++.|+ +.+||-.+|+.+..+.. ...
T Consensus 162 Ri~T~sdDn~v~ff--eGPPFKFk~s~r~HskFV~~VRysP----DG~~Fat~gsDgki~iyDGktge~vg~l~~--~~a 233 (603)
T KOG0318|consen 162 RIATGSDDNTVAFF--EGPPFKFKSSFREHSKFVNCVRYSP----DGSRFATAGSDGKIYIYDGKTGEKVGELED--SDA 233 (603)
T ss_pred EEEeccCCCeEEEe--eCCCeeeeecccccccceeeEEECC----CCCeEEEecCCccEEEEcCCCccEEEEecC--CCC
Confidence 67788888887766 7789999999999999999999999 799999999999 99999999999999886 458
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecC---CceeEEEEcCCCCcEEEEceeeeEEeec--
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG---DSINEIRTQPLKPSLVVSASKVIIISSL-- 156 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~~i~~~~~-- 156 (394)
|++.|++++|+ ||++ .+++++.|.+++|||+.+.++++++.... +.-..+-|.. +.-+-++.+..|-+.+.
T Consensus 234 HkGsIfalsWs--PDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk-d~lItVSl~G~in~ln~~d 309 (603)
T KOG0318|consen 234 HKGSIFALSWS--PDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK-DHLITVSLSGTINYLNPSD 309 (603)
T ss_pred ccccEEEEEEC--CCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC-CeEEEEEcCcEEEEecccC
Confidence 99999999999 9999 99999999999999998887766654221 1112222322 21111111222222221
Q ss_pred ------------cceeeeeee-ccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCc
Q 016185 157 ------------SLICLLLFI-RSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 223 (394)
Q Consensus 157 ------------~~~~~~~~~-~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~ 223 (394)
+..++...+ +..+++|+.||.|.-|+..+|..-+... ++|...|.+++.+. ...+++++.|.+
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g--~~h~nqI~~~~~~~--~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG--KGHTNQIKGMAASE--SGELFTIGWDDT 385 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc--ccccceEEEEeecC--CCcEEEEecCCe
Confidence 112222222 2345555559999999999887766553 27999999999874 345888999999
Q ss_pred EEEEEccccceeeccccccCCCCCCCCcccc--------ccceeeeecC--------CCceEEEEEe--CcEEEEeecCC
Q 016185 224 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV--------QFPVFIASVH--------SNYVDCNRWL--GDFILSKSVDN 285 (394)
Q Consensus 224 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--------~~~i~~~~~~--~~~l~~~~~dg 285 (394)
+++.++..........+.....|........ ...+..++.+ .-...+++++ ++.++.|+.|+
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg 465 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG 465 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc
Confidence 9999886633222221111111111100000 0011112211 1223455665 88999999999
Q ss_pred eEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCe
Q 016185 286 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPI 365 (394)
Q Consensus 286 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 365 (394)
.|++|.+...+.. .......|..+|++++|+|++ .+||++...+.+.+||+.+.+. ....+. -|.+.|
T Consensus 466 kvhvysl~g~~l~-------ee~~~~~h~a~iT~vaySpd~--~yla~~Da~rkvv~yd~~s~~~-~~~~w~--FHtakI 533 (603)
T KOG0318|consen 466 KVHVYSLSGDELK-------EEAKLLEHRAAITDVAYSPDG--AYLAAGDASRKVVLYDVASREV-KTNRWA--FHTAKI 533 (603)
T ss_pred eEEEEEecCCccc-------ceeeeecccCCceEEEECCCC--cEEEEeccCCcEEEEEcccCce-ecceee--eeeeeE
Confidence 9999999876521 223455688899999999999 6999999999999999999864 444444 688999
Q ss_pred eEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 366 RQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 366 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
.+++|+|+..++|+|+-|-.|.||+++.
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccC
Confidence 9999999999999999999999999874
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.1e-42 Score=269.34 Aligned_cols=297 Identities=19% Similarity=0.293 Sum_probs=259.2
Q ss_pred ccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCC
Q 016185 18 SKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD 96 (394)
Q Consensus 18 ~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (394)
+-..+|++.+.+++|.+.|.|+++.| ..++|++|+.|+ |.|||+.+|+...++. +|...|..++++ +-
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP----~n~wf~tgs~DrtikIwDlatg~Lkltlt-----Ghi~~vr~vavS--~r 204 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDP----GNEWFATGSADRTIKIWDLATGQLKLTLT-----GHIETVRGVAVS--KR 204 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCC----CceeEEecCCCceeEEEEcccCeEEEeec-----chhheeeeeeec--cc
Confidence 33467889999999999999999999 678999999999 9999999999988888 678889999988 77
Q ss_pred CCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 97 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
-. ||++++.|+.|+.||++..+.++.+.+|-..|.|++.+| .-..|++|+. |.
T Consensus 205 Hp-YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~gr-------------------------Ds 257 (460)
T KOG0285|consen 205 HP-YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGR-------------------------DS 257 (460)
T ss_pred Cc-eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEecCC-------------------------cc
Confidence 77 999999999999999999999999999999999999999 7789999999 99
Q ss_pred cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccc
Q 016185 177 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256 (394)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (394)
+++|||+++...+..+. +|..+|.++.+.| .+..+++|+.|++|++||++.+ +
T Consensus 258 t~RvWDiRtr~~V~~l~---GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~ag-----------------------k 310 (460)
T KOG0285|consen 258 TIRVWDIRTRASVHVLS---GHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAG-----------------------K 310 (460)
T ss_pred eEEEeeecccceEEEec---CCCCcceeEEeec-CCCceEEecCCceEEEeeeccC-----------------------c
Confidence 99999999999999998 9999999999999 5666999999999999999994 4
Q ss_pred ceeeeecCCCceEEEEEeC--cEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEE
Q 016185 257 PVFIASVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 334 (394)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 334 (394)
....+..|...+++++.++ ..+++++.| .|+-|++..++ .+..+.+|...|+++....|+ ++++|
T Consensus 311 t~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~---------f~~nlsgh~~iintl~~nsD~---v~~~G 377 (460)
T KOG0285|consen 311 TMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE---------FLQNLSGHNAIINTLSVNSDG---VLVSG 377 (460)
T ss_pred eeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc---------hhhccccccceeeeeeeccCc---eEEEc
Confidence 5778888999999999983 355565544 69999999887 677789999999999999998 89999
Q ss_pred eCCCcEEEEEecCCCceeeE-Eec---cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 335 NREGKIFVWELQSSPPVLIA-RLS---HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~-~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
++.|.+.+||.+++..-+.. ... .-.....|.+.+|...|..|++|..|.+|++|.=.
T Consensus 378 ~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99999999999987421111 111 11234678999999999999999999999999754
No 14
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=100.00 E-value=2.4e-41 Score=264.11 Aligned_cols=348 Identities=51% Similarity=0.949 Sum_probs=300.4
Q ss_pred ccccceeeee-ccCccceeEEEEEee-CCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCC-
Q 016185 20 KREYRVTNKL-QEGKRPLYAVVFNFI-DSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD- 96 (394)
Q Consensus 20 ~~~~~~~~~~-~~h~~~v~~i~~sp~-~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 96 (394)
+++|+....+ +.|..+|..++|++. +-.....+|+.+.+.+.+|.......++.++.+..+.+++..+.++|++...
T Consensus 24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT 103 (385)
T ss_pred ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC
Confidence 6778887777 478899999999952 2224578999999999999998777788899888889999999999998765
Q ss_pred CCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 97 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
+.+++|+|+.-|.|+|.|+.++++...+.+|...|+.+.+.|...++++++|. |.
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk-------------------------D~ 158 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK-------------------------DH 158 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC-------------------------Cc
Confidence 57799999999999999999999999999999999999999998999999999 99
Q ss_pred cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEcc--ccceeeccccccCCCCCC--CCcc
Q 016185 177 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSK--FPTK 252 (394)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~--~~~~ 252 (394)
+|++|+++++.++..+...++|...|.++.|++ ++.+|++++.|.++++|++. ..+..++.++.+.+.+.. +++.
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 999999999999999999899999999999999 99999999999999999999 566677777777666555 5555
Q ss_pred cccccee-eeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCC-----CCCCcceecccccCCCCCeEEEEEeecC
Q 016185 253 YVQFPVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDF 326 (394)
Q Consensus 253 ~~~~~~~-~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 326 (394)
....|.. +-..|.+.|.|+.|-|+++++-+-++.|..|..-..+.. +.......+.++....+.|+.+.|+-|.
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred ccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence 5555654 667899999999999999999999999999987332221 3444555778888889999999999887
Q ss_pred CcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 327 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
...+||.|...|.|++||++..++....++.+......|...+|+.|+..|+...+|+.|.-||..+
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 6689999999999999999998876666666656678899999999999999999999999999654
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.1e-43 Score=281.26 Aligned_cols=280 Identities=20% Similarity=0.317 Sum_probs=246.1
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
..+|+.|.|.| +|+.|++|+..+ ..+|+.........++ .|+.+|.++.|+ ++|. ++++|+.+|.|+
T Consensus 96 kc~V~~v~WtP----eGRRLltgs~SGEFtLWNg~~fnFEtilQ-----aHDs~Vr~m~ws--~~g~-wmiSgD~gG~iK 163 (464)
T KOG0284|consen 96 KCPVNVVRWTP----EGRRLLTGSQSGEFTLWNGTSFNFETILQ-----AHDSPVRTMKWS--HNGT-WMISGDKGGMIK 163 (464)
T ss_pred ccceeeEEEcC----CCceeEeecccccEEEecCceeeHHHHhh-----hhcccceeEEEc--cCCC-EEEEcCCCceEE
Confidence 45899999999 799999999988 9999974433322333 799999999999 8899 999999999999
Q ss_pred EEECCCCeeEEEEEec-CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEE
Q 016185 112 VIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICIL 190 (394)
Q Consensus 112 vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~ 190 (394)
+|+..- ..++.+++| ...|.+++|+| +...++++++ ||+|+|||....+...
T Consensus 164 yWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~Sd-------------------------Dg~ikiWdf~~~kee~ 216 (464)
T KOG0284|consen 164 YWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSD-------------------------DGTIKIWDFRMPKEER 216 (464)
T ss_pred ecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecC-------------------------CCeEEEEeccCCchhh
Confidence 999754 445555555 48999999999 6688999999 9999999999888888
Q ss_pred EeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEE
Q 016185 191 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 270 (394)
Q Consensus 191 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 270 (394)
.+. +|.-.|.+++|+| ...++++++.|..|++||.++ ..++.++..|...|..
T Consensus 217 vL~---GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS-----------------------g~cl~tlh~HKntVl~ 269 (464)
T KOG0284|consen 217 VLR---GHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS-----------------------GSCLATLHGHKNTVLA 269 (464)
T ss_pred eec---cCCCCcceeccCC-ccceeEEccCCceeEeecCCC-----------------------cchhhhhhhccceEEE
Confidence 887 8999999999999 888999999999999999999 5568899999999999
Q ss_pred EEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 271 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 271 ~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
+.|. +++|++++.|..+++||+++.+ .+..+++|...++++.|+|-.+ .+|.+|+.||.|..|.+...
T Consensus 270 ~~f~~n~N~Llt~skD~~~kv~DiR~mk---------El~~~r~Hkkdv~~~~WhP~~~-~lftsgg~Dgsvvh~~v~~~ 339 (464)
T KOG0284|consen 270 VKFNPNGNWLLTGSKDQSCKVFDIRTMK---------ELFTYRGHKKDVTSLTWHPLNE-SLFTSGGSDGSVVHWVVGLE 339 (464)
T ss_pred EEEcCCCCeeEEccCCceEEEEehhHhH---------HHHHhhcchhhheeeccccccc-cceeeccCCCceEEEecccc
Confidence 9998 8899999999999999999665 6889999999999999999887 69999999999999999855
Q ss_pred CceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 349 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
++ +..++ ..|...|.+++|+|=|..|++|+.|.++++|.-
T Consensus 340 ~p--~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 340 EP--LGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cc--ccCCC-cccccceeeeeccccceeEeecCCCcceeeecc
Confidence 43 33333 378899999999999999999999999999974
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-40 Score=272.33 Aligned_cols=277 Identities=20% Similarity=0.381 Sum_probs=250.2
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
...|++++|+. +|.+||+|+.|+ ++||+ ..|..+.++. .|.++|.++.|. ..|. +|++++.|+++.
T Consensus 235 nkdVT~L~Wn~----~G~~LatG~~~G~~riw~-~~G~l~~tl~-----~HkgPI~slKWn--k~G~-yilS~~vD~tti 301 (524)
T KOG0273|consen 235 NKDVTSLDWNN----DGTLLATGSEDGEARIWN-KDGNLISTLG-----QHKGPIFSLKWN--KKGT-YILSGGVDGTTI 301 (524)
T ss_pred cCCcceEEecC----CCCeEEEeecCcEEEEEe-cCchhhhhhh-----ccCCceEEEEEc--CCCC-EEEeccCCccEE
Confidence 35799999997 899999999999 99999 6677777777 799999999999 9999 999999999999
Q ss_pred EEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEE
Q 016185 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILI 191 (394)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 191 (394)
+||..+++..+.+.-|..+-.++.|-. ...+++++. |+.|+|+.+....++.+
T Consensus 302 lwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~t-------------------------d~~i~V~kv~~~~P~~t 354 (524)
T KOG0273|consen 302 LWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSST-------------------------DGCIHVCKVGEDRPVKT 354 (524)
T ss_pred EEeccCceEEEeeeeccCCccceEEec--CceEeecCC-------------------------CceEEEEEecCCCccee
Confidence 999999999999999988878899975 467888888 99999999999999999
Q ss_pred eeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEE
Q 016185 192 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 271 (394)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 271 (394)
+. +|.++|.++.|+| .+.+|++++.|++++||.... ......+..|...|..+
T Consensus 355 ~~---GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~-----------------------~~~~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 355 FI---GHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQ-----------------------SNSVHDLQAHSKEIYTI 407 (524)
T ss_pred ee---cccCceEEEEECC-CCceEEEecCCCeeEeeecCC-----------------------CcchhhhhhhccceeeE
Confidence 99 8999999999999 999999999999999999887 44567788899899998
Q ss_pred EEe-----------CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcE
Q 016185 272 RWL-----------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 340 (394)
Q Consensus 272 ~~~-----------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 340 (394)
.|+ +..+++++.|++|++||+..+. ++..+..|..+|++++|+|++ .++|+|+.||.|
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---------~i~~f~kH~~pVysvafS~~g--~ylAsGs~dg~V 476 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---------PIHTLMKHQEPVYSVAFSPNG--RYLASGSLDGCV 476 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---------eeEeeccCCCceEEEEecCCC--cEEEecCCCCee
Confidence 886 3489999999999999999887 688899999999999999999 799999999999
Q ss_pred EEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 341 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
.+|+.++++ .++.+.. .+.|..++|+.+|.+|..+-.|+.+++-|++
T Consensus 477 ~iws~~~~~--l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 477 HIWSTKTGK--LVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred Eeccccchh--eeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999984 5666652 3669999999999999999999999999986
No 17
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.5e-40 Score=260.98 Aligned_cols=308 Identities=18% Similarity=0.229 Sum_probs=254.0
Q ss_pred eeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEe
Q 016185 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (394)
Q Consensus 26 ~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 104 (394)
..+|..|+++|++++.+| +.+++|||+.|. -.||++.+++....+. +|++.|.++.|+ .+|. +||||
T Consensus 57 ~~tF~~H~~svFavsl~P----~~~l~aTGGgDD~AflW~~~~ge~~~elt-----gHKDSVt~~~Fs--hdgt-lLATG 124 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHP----NNNLVATGGGDDLAFLWDISTGEFAGELT-----GHKDSVTCCSFS--HDGT-LLATG 124 (399)
T ss_pred eeehhhcCCceEEEEeCC----CCceEEecCCCceEEEEEccCCcceeEec-----CCCCceEEEEEc--cCce-EEEec
Confidence 457889999999999999 789999999987 9999999999888877 799999999998 8899 99999
Q ss_pred ecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec
Q 016185 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ 184 (394)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~ 184 (394)
+.+|.|+||+..++.....+...-..|.-+.|+| ...+|+.|+. ||.+-+|.+.
T Consensus 125 dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~-------------------------DGsvWmw~ip 178 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGST-------------------------DGSVWMWQIP 178 (399)
T ss_pred CCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecC-------------------------CCcEEEEECC
Confidence 9999999999999999888876677889999999 8899999999 9999999999
Q ss_pred CCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc------ccCCCCCCCC--------
Q 016185 185 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF------TWTDLPSKFP-------- 250 (394)
Q Consensus 185 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~~~-------- 250 (394)
++...+.+. +|+.++++=.|.| +|+.++++..||+|++|++.+++......- .+........
T Consensus 179 ~~~~~kv~~---Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 179 SQALCKVMS---GHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred CcceeeEec---CCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 887888887 8999999999999 999999999999999999999876554431 1111100000
Q ss_pred ------ccccccceeee--------ecCCCceEEEEE---e--CcEEEEeecCCeEEEecCCCCCCCCCCCcceeccccc
Q 016185 251 ------TKYVQFPVFIA--------SVHSNYVDCNRW---L--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 311 (394)
Q Consensus 251 ------~~~~~~~~~~~--------~~~~~~i~~~~~---~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 311 (394)
.....+.+... ..+...+.|+.+ + =.+.++|+.||+|.|||+.... ++..-
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----------~R~~c 324 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----------LRHIC 324 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch----------hheec
Confidence 00001111111 133344444444 3 3478899999999999998763 56666
Q ss_pred CCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 312 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
.|+.+|..+.|-+. .+|++++.+|.|+.||.++++ +...+. +|...|.+++++|++++++++|.|++.+||++
T Consensus 325 ~he~~V~~l~w~~t---~~l~t~c~~g~v~~wDaRtG~--l~~~y~--GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 325 EHEDGVTKLKWLNT---DYLLTACANGKVRQWDARTGQ--LKFTYT--GHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred cCCCceEEEEEcCc---chheeeccCceEEeeeccccc--eEEEEe--cCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 78888999999993 489999999999999999994 677777 99999999999999999999999999999987
Q ss_pred C
Q 016185 392 I 392 (394)
Q Consensus 392 ~ 392 (394)
.
T Consensus 398 ~ 398 (399)
T KOG0296|consen 398 P 398 (399)
T ss_pred C
Confidence 5
No 18
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-41 Score=256.13 Aligned_cols=284 Identities=20% Similarity=0.343 Sum_probs=243.4
Q ss_pred eeEEEEEeeCCCcceEEEEe--------cCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 36 LYAVVFNFIDSRYFNVFATV--------GGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 36 v~~i~~sp~~~~~~~~las~--------~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
=+++.|||. ..++||.+ +.+++.|.++..++.+..++.+ .-++.++.++|+.+ ....+++++.|
T Consensus 11 GysvqfSPf---~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~---d~~D~LfdV~Wse~--~e~~~~~a~GD 82 (311)
T KOG0277|consen 11 GYSVQFSPF---VENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY---DTEDGLFDVAWSEN--HENQVIAASGD 82 (311)
T ss_pred cceeEeccc---ccchhheeehhhcccccCceEEEEecCCCCCeEEEEee---ecccceeEeeecCC--CcceEEEEecC
Confidence 368899995 23444433 2233999998767777777766 46789999999944 44479999999
Q ss_pred CeEEEEECCC-CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC
Q 016185 108 GIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG 186 (394)
Q Consensus 108 g~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~ 186 (394)
|.+++||+.. ..+++.++.|..+|.++.|++..+..+++++. |++|++|+...+
T Consensus 83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW-------------------------D~TiKLW~~~r~ 137 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW-------------------------DGTIKLWDPNRP 137 (311)
T ss_pred ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeecc-------------------------CCceEeecCCCC
Confidence 9999999653 46889999999999999999988888999999 999999999999
Q ss_pred cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCC
Q 016185 187 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 266 (394)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (394)
+.++++. +|...|+..+|+|..++++++++.|+.+++||++.. .+ ...++.|..
T Consensus 138 ~Sv~Tf~---gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~----------------------gk-~~~i~ah~~ 191 (311)
T KOG0277|consen 138 NSVQTFN---GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP----------------------GK-FMSIEAHNS 191 (311)
T ss_pred cceEeec---CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC----------------------Cc-eeEEEeccc
Confidence 9999999 899999999999999999999999999999999982 22 334889999
Q ss_pred ceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEE
Q 016185 267 YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 343 (394)
Q Consensus 267 ~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iw 343 (394)
.|.|+.|+ ...+++|+.|+.|+.||+++.+. ++..+.+|.-.|..++|||... .+|++++.|-+++||
T Consensus 192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--------pl~eL~gh~~AVRkvk~Sph~~-~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--------PLFELNGHGLAVRKVKFSPHHA-SLLASASYDMTVRIW 262 (311)
T ss_pred eeEeecccccCCcEEEecCCCceEEEEehhhccc--------cceeecCCceEEEEEecCcchh-hHhhhccccceEEec
Confidence 99999997 77999999999999999998764 5788899999999999999987 799999999999999
Q ss_pred EecCCCceeeEEeccCCccCCeeEEEecc-CCCEEEEeccCCeEEEEE
Q 016185 344 ELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd 390 (394)
|...+. ..+.+.. .|.+.|..+.||+ ++.++|+++.|+.++||+
T Consensus 263 ~~~~~d-s~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 263 DPERQD-SAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccccch-hhhhhhh--ccceEEeccccccccCceeeecccccceeeec
Confidence 998654 3556666 7889999999997 577999999999999998
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-40 Score=284.34 Aligned_cols=341 Identities=17% Similarity=0.268 Sum_probs=267.8
Q ss_pred ecccccccceeeeecc-CccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEE
Q 016185 16 TPSKKREYRVTNKLQE-GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC 93 (394)
Q Consensus 16 ~~~~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 93 (394)
..+..+.-++.+.++. |+.||.-++|+| .+.++|+|+.|+ ++|||+..+.....++ +|.+.|..+.|.+
T Consensus 87 rv~~L~tgk~irswKa~He~Pvi~ma~~~----~g~LlAtggaD~~v~VWdi~~~~~th~fk-----G~gGvVssl~F~~ 157 (775)
T KOG0319|consen 87 RVWSLPTGKLIRSWKAIHEAPVITMAFDP----TGTLLATGGADGRVKVWDIKNGYCTHSFK-----GHGGVVSSLLFHP 157 (775)
T ss_pred EEEEcccchHhHhHhhccCCCeEEEEEcC----CCceEEeccccceEEEEEeeCCEEEEEec-----CCCceEEEEEeCC
Confidence 3344444566777777 999999999999 789999999999 9999999999999998 7899999999986
Q ss_pred cCCCCcEEEEeecCCeEEEEECCCCe-eEEEEEecCCceeEEEEcCCCCcEEEEcee--eeEEeecc-------------
Q 016185 94 NVDGIPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASK--VIIISSLS------------- 157 (394)
Q Consensus 94 ~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--~i~~~~~~------------- 157 (394)
.+.-. +|++|..|+.+++||+.+.. ++..+..|.+.|++++|.++ +..++++++ .+-+|++-
T Consensus 158 ~~~~~-lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~ 235 (775)
T KOG0319|consen 158 HWNRW-LLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDLVQYKKLKTLPLYES 235 (775)
T ss_pred ccchh-heeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC-CceEEEeccCcEEEEeehhhhhhhheechhhh
Confidence 66665 89999999999999998654 47888899999999999995 555555555 77888861
Q ss_pred ceeeeeee------ccceeeeccCCcEEEEEecCCcEEEEeec-------------------------------------
Q 016185 158 LICLLLFI------RSNCLRVGQDESVRLWNVQTGICILIFAG------------------------------------- 194 (394)
Q Consensus 158 ~~~~~~~~------~~~~~~~~~d~~i~vwd~~~~~~~~~~~~------------------------------------- 194 (394)
.-.+..-+ +..++++|++|.+++||.++++.....+.
T Consensus 236 ~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i 315 (775)
T KOG0319|consen 236 LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI 315 (775)
T ss_pred eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence 11111111 24677777777777777654322111000
Q ss_pred ---------------------------------------------cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEc
Q 016185 195 ---------------------------------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 229 (394)
Q Consensus 195 ---------------------------------------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~ 229 (394)
..+|+..|.++.... ++.+|++|+.|.++++|.+
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRL 394 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEe
Confidence 038999999999544 6789999999999999998
Q ss_pred cccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCccee
Q 016185 230 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI 306 (394)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 306 (394)
.+... ...++....+|.+.|.+++++ ..++++++.|.++++|++...+..........
T Consensus 395 ~~~~~-------------------~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 395 NNNCS-------------------KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred cCCcc-------------------hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 54211 133566788999999999998 56999999999999999998443322212222
Q ss_pred cccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeE
Q 016185 307 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 386 (394)
Q Consensus 307 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 386 (394)
-.....|...|++++++|+. .++|||+.|.+.+||++... .....+. +|...|.++.|+|..+.|||+|.|++|
T Consensus 456 ~~t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~~--~l~~vLs--GH~RGvw~V~Fs~~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQL--RLLGVLS--GHTRGVWCVSFSKNDQLLATCSGDKTV 529 (775)
T ss_pred hHHHHhhcccccceEecCCC--ceEEecccccceeeecccCc--eEEEEee--CCccceEEEEeccccceeEeccCCceE
Confidence 23456799999999999999 79999999999999999954 6788888 999999999999999999999999999
Q ss_pred EEEEcCC
Q 016185 387 WRWDAIP 393 (394)
Q Consensus 387 ~iwd~~~ 393 (394)
+||.+++
T Consensus 530 KIW~is~ 536 (775)
T KOG0319|consen 530 KIWSIST 536 (775)
T ss_pred EEEEecc
Confidence 9999875
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.3e-39 Score=271.32 Aligned_cols=284 Identities=27% Similarity=0.454 Sum_probs=247.2
Q ss_pred eeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee
Q 016185 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (394)
Q Consensus 27 ~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 105 (394)
+.+++|.++|++++|+| +++++++++.++ +++|++.+++....+. .|...+..+.|. ++++ ++++++
T Consensus 3 ~~~~~h~~~i~~~~~~~----~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-----~~~~~i~~~~~~--~~~~-~l~~~~ 70 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP----DGKLLATGSGDGTIKVWDLETGELLRTLK-----GHTGPVRDVAAS--ADGT-YLASGS 70 (289)
T ss_pred hHhcccCCCEEEEEEcC----CCCEEEEeecCcEEEEEEeeCCCcEEEEe-----cCCcceeEEEEC--CCCC-EEEEEc
Confidence 46789999999999999 688999999877 9999999887666665 566777778877 8887 899999
Q ss_pred cCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC
Q 016185 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT 185 (394)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~ 185 (394)
.+|.|++||+.+++....+..|...+.++.|++ ++.++++++. ++.|.+||+++
T Consensus 71 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~-------------------------~~~i~~~~~~~ 124 (289)
T cd00200 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSR-------------------------DKTIKVWDVET 124 (289)
T ss_pred CCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecC-------------------------CCeEEEEECCC
Confidence 999999999998888889999999999999999 5788998888 99999999998
Q ss_pred CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 186 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 186 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
++....+. .|...|.+++|+| ++.++++++.|+.|++||++. ..++..+..|.
T Consensus 125 ~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~-----------------------~~~~~~~~~~~ 177 (289)
T cd00200 125 GKCLTTLR---GHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRT-----------------------GKCVATLTGHT 177 (289)
T ss_pred cEEEEEec---cCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccc-----------------------cccceeEecCc
Confidence 88888887 7889999999999 788888888899999999987 33456667888
Q ss_pred CceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEE
Q 016185 266 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 343 (394)
Q Consensus 266 ~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iw 343 (394)
..+.++.|+ ++.+++++.|+.|++||++..+ .+..+..+...+.++.|+|++ .++++++.|+.|++|
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~i~ 246 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK---------CLGTLRGHENGVNSVAFSPDG--YLLASGSEDGTIRVW 246 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCCCc---------eecchhhcCCceEEEEEcCCC--cEEEEEcCCCcEEEE
Confidence 899999998 4488888999999999998765 456666777899999999996 688888889999999
Q ss_pred EecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 344 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
|+.+++ ....+. .|...|.+++|+|++++|++++.||.|++|+
T Consensus 247 ~~~~~~--~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 247 DLRTGE--CVQTLS--GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCce--eEEEcc--ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 998763 555666 7778999999999999999999999999996
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-40 Score=276.82 Aligned_cols=287 Identities=22% Similarity=0.376 Sum_probs=252.7
Q ss_pred cceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEE
Q 016185 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (394)
Q Consensus 23 ~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (394)
++..+.+..|...|.++.|+| ....+.++-.++ |.|||..+...++.+. ..+.+|.+..|- +..+ ++
T Consensus 3 l~~krk~~~rSdRVKsVd~HP----tePw~la~LynG~V~IWnyetqtmVksfe-----V~~~PvRa~kfi--aRkn-Wi 70 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHP----TEPWILAALYNGDVQIWNYETQTMVKSFE-----VSEVPVRAAKFI--ARKN-WI 70 (794)
T ss_pred chhhhHhhccCCceeeeecCC----CCceEEEeeecCeeEEEecccceeeeeee-----ecccchhhheee--eccc-eE
Confidence 345566777999999999999 566777776666 9999999998888888 567788888887 6666 99
Q ss_pred EEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEE
Q 016185 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLW 181 (394)
Q Consensus 102 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw 181 (394)
++|+.|..|+||+..+++.+..|..|.+-|.+++.+| ...+++++|+ |-.|++|
T Consensus 71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSD-------------------------Dm~iKlW 124 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSD-------------------------DMTIKLW 124 (794)
T ss_pred EEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCC-------------------------ccEEEEe
Confidence 9999999999999999999999999999999999999 6788999999 9999999
Q ss_pred EecCC-cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceee
Q 016185 182 NVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 260 (394)
Q Consensus 182 d~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (394)
|.+.+ .+.+++. +|+..|.+++|+|.|.+.|++++.|++|++|.+.+ ..|..+
T Consensus 125 ~we~~wa~~qtfe---GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-----------------------~~~nfT 178 (794)
T KOG0276|consen 125 DWENEWACEQTFE---GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-----------------------PHPNFT 178 (794)
T ss_pred eccCceeeeeEEc---CcceEEEEEEecCCCccceeeeeccccEEEEEcCC-----------------------CCCcee
Confidence 99865 5677777 99999999999999999999999999999999999 567889
Q ss_pred eecCCCceEEEEEe-Cc---EEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC
Q 016185 261 ASVHSNYVDCNRWL-GD---FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 336 (394)
Q Consensus 261 ~~~~~~~i~~~~~~-~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 336 (394)
+++|...|.|+.+- +. ++++|+.|..|++||.++.. +++++.+|...|..+.|+|.- .++++|++
T Consensus 179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~---------CV~TLeGHt~Nvs~v~fhp~l--piiisgsE 247 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS---------CVQTLEGHTNNVSFVFFHPEL--PIIISGSE 247 (794)
T ss_pred eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH---------HHHHhhcccccceEEEecCCC--cEEEEecC
Confidence 99999999999996 33 99999999999999999877 899999999999999999999 69999999
Q ss_pred CCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEE
Q 016185 337 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 388 (394)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 388 (394)
||+++||+-.+.+ +...+. -..+++.+++-.+.++.++.|.+.|.|.+
T Consensus 248 DGTvriWhs~Ty~--lE~tLn--~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 248 DGTVRIWNSKTYK--LEKTLN--YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CccEEEecCccee--hhhhhh--cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999998874 334444 22368999999998889999988887654
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-40 Score=288.66 Aligned_cols=274 Identities=22% Similarity=0.373 Sum_probs=239.9
Q ss_pred eccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 29 ~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
+......++|..|++ ++.+||.|-.|. |++|.+... .++.++. .++- . .+=+.+.|
T Consensus 374 ~~nt~~~v~ca~fSd----dssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~------------~~~l-----~-~~d~~sad 430 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSD----DSSMLACGFVDSSVRVWSLTPK-KLKKLKD------------ASDL-----S-NIDTESAD 430 (707)
T ss_pred EEEcCCcceeEeecC----CcchhhccccccEEEEEecchh-hhccccc------------hhhh-----c-cccccccc
Confidence 333456799999998 688999998888 999998654 3344441 1111 1 23334555
Q ss_pred CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
-.+.+.|.......+++.+|.++|..+.|+| +.++|++++. |+++++|.+++..
T Consensus 431 ~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSE-------------------------D~svRLWsl~t~s 484 (707)
T KOG0263|consen 431 VDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSE-------------------------DSSVRLWSLDTWS 484 (707)
T ss_pred hhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccC-------------------------Ccceeeeecccce
Confidence 5577788777778888999999999999999 8899999999 9999999999999
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCc
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (394)
.+-.++ +|..+|..+.|+| .|.+|+|++.|++-++|.... ..|.+.+.+|.+.
T Consensus 485 ~~V~y~---GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~-----------------------~~PlRifaghlsD 537 (707)
T KOG0263|consen 485 CLVIYK---GHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDH-----------------------NKPLRIFAGHLSD 537 (707)
T ss_pred eEEEec---CCCcceeeEEecC-CceEEEecCCCceeeeeeccc-----------------------CCchhhhcccccc
Confidence 999998 9999999999999 999999999999999999998 6689999999999
Q ss_pred eEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 268 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 268 i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
|.|+.|+ ..|+++|+.|.++++||..++. .++.|.+|..+|.+++|||+| ++|++|+.||.|.+||+
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~---------~VRiF~GH~~~V~al~~Sp~G--r~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGN---------SVRIFTGHKGPVTALAFSPCG--RYLASGDEDGLIKIWDL 606 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCc---------EEEEecCCCCceEEEEEcCCC--ceEeecccCCcEEEEEc
Confidence 9999998 6699999999999999999887 688999999999999999999 79999999999999999
Q ss_pred cCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 346 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
.++. .+..+. +|.+.|.++.|+.||..||+||.|.+|++||+..
T Consensus 607 ~~~~--~v~~l~--~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGS--LVKQLK--GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCc--chhhhh--cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9984 667777 8899999999999999999999999999999864
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-38 Score=263.27 Aligned_cols=348 Identities=18% Similarity=0.254 Sum_probs=279.0
Q ss_pred eeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc---EEEEEcCCCceeEEeeecccC
Q 016185 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDE 80 (394)
Q Consensus 4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~---i~vw~~~~~~~~~~~~~~~~~ 80 (394)
.|.|+..+..++......+..++.+++.-.++|..|+|++ +++.+++.++++ .+++-.++|..+..+.
T Consensus 74 iASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~----ds~RI~avGEGrerfg~~F~~DSG~SvGei~----- 144 (603)
T KOG0318|consen 74 IASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDF----DSKRIAAVGEGRERFGHVFLWDSGNSVGEIT----- 144 (603)
T ss_pred EeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCC----CCcEEEEEecCccceeEEEEecCCCccceee-----
Confidence 6889999999999999999999999999999999999998 677777777654 5555555788888888
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
+|...|++++|. |.-...+++|+.|+.|.+|+-..-+...+++.|...|.|+.|+| ++.++++.+.
T Consensus 145 GhSr~ins~~~K--psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gs----------- 210 (603)
T KOG0318|consen 145 GHSRRINSVDFK--PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGS----------- 210 (603)
T ss_pred ccceeEeeeecc--CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecC-----------
Confidence 788899999998 55666799999999999999777788889999999999999999 7899999999
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
||.|.+||=.+|+.+..+....+|++.|.++.|+| |+..|++++.|.++++||+.+.+...+...
T Consensus 211 --------------Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 211 --------------DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred --------------CccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeec
Confidence 99999999999999999987778999999999999 999999999999999999998644332211
Q ss_pred c-----------cCCC-------CC--CCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCC
Q 016185 241 T-----------WTDL-------PS--KFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS 298 (394)
Q Consensus 241 ~-----------~~~~-------~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~ 298 (394)
. |++. .. .+-......++..+.+|...|+++..+ +++|++|+.||.|.-||..++...
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 1 1110 00 000111123678899999999999997 789999999999999999877542
Q ss_pred CCC--Ccce-----------------------------------------------------------------eccccc
Q 016185 299 PGE--GTAD-----------------------------------------------------------------ILQKYP 311 (394)
Q Consensus 299 ~~~--~~~~-----------------------------------------------------------------~~~~~~ 311 (394)
... .+.. .++.+.
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 110 0000 000000
Q ss_pred -----CCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeE
Q 016185 312 -----VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 386 (394)
Q Consensus 312 -----~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 386 (394)
.......+++++|++ ..++.|+.|+.|++|.+...+......+. .|.++|+.+++|||+.+||+|...+.+
T Consensus 436 ~~~~~~~~y~~s~vAv~~~~--~~vaVGG~Dgkvhvysl~g~~l~ee~~~~--~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 436 KVSSIPIGYESSAVAVSPDG--SEVAVGGQDGKVHVYSLSGDELKEEAKLL--EHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred cceeeccccccceEEEcCCC--CEEEEecccceEEEEEecCCcccceeeee--cccCCceEEEECCCCcEEEEeccCCcE
Confidence 001145678899999 68999999999999999987644444444 888999999999999999999999999
Q ss_pred EEEEcCC
Q 016185 387 WRWDAIP 393 (394)
Q Consensus 387 ~iwd~~~ 393 (394)
.+||+.+
T Consensus 512 v~yd~~s 518 (603)
T KOG0318|consen 512 VLYDVAS 518 (603)
T ss_pred EEEEccc
Confidence 9999875
No 24
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.9e-42 Score=268.40 Aligned_cols=275 Identities=23% Similarity=0.357 Sum_probs=239.2
Q ss_pred CccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeE
Q 016185 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (394)
Q Consensus 32 h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 110 (394)
....|+|+.+. .+.+++|..|. |+|||.++-..+..+. +|.+.|.|+.+. .+ .+++|+.|.+|
T Consensus 196 ~skgVYClQYD------D~kiVSGlrDnTikiWD~n~~~c~~~L~-----GHtGSVLCLqyd----~r-viisGSSDsTv 259 (499)
T KOG0281|consen 196 NSKGVYCLQYD------DEKIVSGLRDNTIKIWDKNSLECLKILT-----GHTGSVLCLQYD----ER-VIVSGSSDSTV 259 (499)
T ss_pred cCCceEEEEec------chhhhcccccCceEEeccccHHHHHhhh-----cCCCcEEeeecc----ce-EEEecCCCceE
Confidence 46789999986 35799999998 9999998888888877 789999888765 55 99999999999
Q ss_pred EEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEE
Q 016185 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICIL 190 (394)
Q Consensus 111 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~ 190 (394)
+|||+++++++.++-+|...|..+.|+. .++++++. |.++.+||+.....+.
T Consensus 260 rvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSk-------------------------DrsiaVWdm~sps~it 311 (499)
T KOG0281|consen 260 RVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSK-------------------------DRSIAVWDMASPTDIT 311 (499)
T ss_pred EEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecC-------------------------CceeEEEeccCchHHH
Confidence 9999999999999999999999999986 69999999 9999999998765433
Q ss_pred EeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEE
Q 016185 191 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 270 (394)
Q Consensus 191 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 270 (394)
....+.+|...|+.+.|+. +++++++.|.+|++|+..+ ...+.++.+|...|.|
T Consensus 312 ~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st-----------------------~efvRtl~gHkRGIAC 365 (499)
T KOG0281|consen 312 LRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTST-----------------------CEFVRTLNGHKRGIAC 365 (499)
T ss_pred HHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccc-----------------------eeeehhhhccccccee
Confidence 3233348999999999963 5999999999999999999 4568899999999999
Q ss_pred EEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCc
Q 016185 271 NRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 350 (394)
Q Consensus 271 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 350 (394)
+.+.++++++|+.|.+|++||++.+. +++.+++|+.-|.++.|... .+++|+.||+|++||+..+..
T Consensus 366 lQYr~rlvVSGSSDntIRlwdi~~G~---------cLRvLeGHEeLvRciRFd~k----rIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 366 LQYRDRLVVSGSSDNTIRLWDIECGA---------CLRVLEGHEELVRCIRFDNK----RIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred hhccCeEEEecCCCceEEEEeccccH---------HHHHHhchHHhhhheeecCc----eeeeccccceEEEEecccccC
Confidence 99999999999999999999999887 79999999999999999754 599999999999999987642
Q ss_pred e-------eeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 351 V-------LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 351 ~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
. ++..+. .|.+.|..+.| |...+++++.|.+|-|||..+
T Consensus 433 pra~~~~~Cl~~lv--~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 433 PRAPASTLCLRTLV--EHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred CcccccchHHHhhh--hccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 2 333333 78899999999 466899999999999999854
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-38 Score=243.72 Aligned_cols=240 Identities=21% Similarity=0.365 Sum_probs=211.2
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC-----CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISS 155 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~ 155 (394)
+|.+.|..++.. +.+...+++++.|..+.+|++.. |.+++.+.+|...|..+..++ ++++.++++.
T Consensus 13 gh~d~Vt~la~~--~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~sw------ 83 (315)
T KOG0279|consen 13 GHTDWVTALAIK--IKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASW------ 83 (315)
T ss_pred CCCceEEEEEee--cCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccc------
Confidence 789999999988 66666999999999999999753 567899999999999999999 8899999999
Q ss_pred ccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEcccccee
Q 016185 156 LSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY 235 (394)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 235 (394)
|+++++||+.+++..+.|. +|...|.+++|+| +...+++|+.|.+|++|+.....
T Consensus 84 -------------------D~~lrlWDl~~g~~t~~f~---GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~c-- 138 (315)
T KOG0279|consen 84 -------------------DGTLRLWDLATGESTRRFV---GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVC-- 138 (315)
T ss_pred -------------------cceEEEEEecCCcEEEEEE---ecCCceEEEEecC-CCceeecCCCcceeeeeeecccE--
Confidence 9999999999999999999 8999999999999 99999999999999999998732
Q ss_pred eccccccCCCCCCCCccccccceeeeec--CCCceEEEEEeCc----EEEEeecCCeEEEecCCCCCCCCCCCcceeccc
Q 016185 236 VEKSFTWTDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWLGD----FILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 309 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~----~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 309 (394)
..++.. +.+.|.|+.|+++ +|++++.|+++++||+++.+ ....
T Consensus 139 ----------------------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---------l~~~ 187 (315)
T KOG0279|consen 139 ----------------------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---------LRTT 187 (315)
T ss_pred ----------------------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---------hhhc
Confidence 222322 3789999999843 89999999999999999887 6788
Q ss_pred ccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEE
Q 016185 310 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 310 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 389 (394)
+.+|..-++.+++|||| .++++|+.||.+.+||++.++ .+..+ +|...|.+++|+|+...|+.+. +..|+||
T Consensus 188 ~~gh~~~v~t~~vSpDG--slcasGgkdg~~~LwdL~~~k--~lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIw 259 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDG--SLCASGGKDGEAMLWDLNEGK--NLYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIW 259 (315)
T ss_pred cccccccEEEEEECCCC--CEEecCCCCceEEEEEccCCc--eeEec---cCCCeEeeEEecCCceeEeecc-CCceEEE
Confidence 99999999999999999 699999999999999999985 35554 5668999999999977776664 5569999
Q ss_pred EcCC
Q 016185 390 DAIP 393 (394)
Q Consensus 390 d~~~ 393 (394)
|+.+
T Consensus 260 dl~~ 263 (315)
T KOG0279|consen 260 DLES 263 (315)
T ss_pred eccc
Confidence 9875
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.5e-38 Score=301.14 Aligned_cols=296 Identities=20% Similarity=0.312 Sum_probs=241.0
Q ss_pred ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC----ceeEE-eeecccCCcccceEEEEEEEcCC-CCcEEE
Q 016185 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----GVIAA-LQSYVDEDKEESFYTVSWACNVD-GIPFLV 102 (394)
Q Consensus 30 ~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~----~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~ 102 (394)
..|.+.|++++|+| +++++|+|+.|+ |+||+.... ..... .... .+...+.+++|. +. +. +|+
T Consensus 480 ~~~~~~V~~i~fs~----dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~--~~~~~-~la 549 (793)
T PLN00181 480 LNSSNLVCAIGFDR----DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWN--SYIKS-QVA 549 (793)
T ss_pred cCCCCcEEEEEECC----CCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEec--cCCCC-EEE
Confidence 45899999999999 789999999998 999997542 11000 0000 234578888887 54 55 899
Q ss_pred EeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEE
Q 016185 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWN 182 (394)
Q Consensus 103 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd 182 (394)
+++.||.|++||+.+++.+..+.+|...|.+++|+|.++.+|++|+. |+.|++||
T Consensus 550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-------------------------Dg~v~iWd 604 (793)
T PLN00181 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-------------------------DGSVKLWS 604 (793)
T ss_pred EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-------------------------CCEEEEEE
Confidence 99999999999999999999999999999999999867889999999 99999999
Q ss_pred ecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeee
Q 016185 183 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 262 (394)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (394)
++++..+..+. +...+.++.|++.++.+|++|+.||.|++||++..+ .++..+.
T Consensus 605 ~~~~~~~~~~~----~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----------------------~~~~~~~ 658 (793)
T PLN00181 605 INQGVSIGTIK----TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----------------------LPLCTMI 658 (793)
T ss_pred CCCCcEEEEEe----cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----------------------ccceEec
Confidence 99999888886 446899999965478999999999999999998732 2455677
Q ss_pred cCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEE
Q 016185 263 VHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 341 (394)
Q Consensus 263 ~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 341 (394)
+|...|.++.|. +.++++++.|+.|++||++...... ....+..+.+|...+..++|+|++ .+|++|+.|+.|+
T Consensus 659 ~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~--~~lasgs~D~~v~ 733 (793)
T PLN00181 659 GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSD--GYIATGSETNEVF 733 (793)
T ss_pred CCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCC--CEEEEEeCCCEEE
Confidence 899999999997 8899999999999999997542110 112466788899999999999998 6999999999999
Q ss_pred EEEecCCCceeeEEec---------cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 342 VWELQSSPPVLIARLS---------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 342 iwd~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
+|+.....+.....+. ...+...|.+++|+|++..|++|+.||.|+||++
T Consensus 734 iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 734 VYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9998765432222211 1245567999999999999999999999999997
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=282.18 Aligned_cols=294 Identities=22% Similarity=0.405 Sum_probs=247.8
Q ss_pred cccceeeeeccC-ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc--eeEEeeecccCCcccceEEEEEEEcCC
Q 016185 21 REYRVTNKLQEG-KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVD 96 (394)
Q Consensus 21 ~~~~~~~~~~~h-~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (394)
..+.....+.+| ...|.++.|+| +|+.+++++.++ +++|+....+ .+..+ .+|...|+.++|+ |+
T Consensus 146 ~~~~~~~~~~~~~~~sv~~~~fs~----~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-----~~h~~~v~~~~fs--~d 214 (456)
T KOG0266|consen 146 RVFSLEQTLAGHECPSVTCVDFSP----DGRALAAASSDGLIRIWKLEGIKSNLLREL-----SGHTRGVSDVAFS--PD 214 (456)
T ss_pred ccceeeeeecccccCceEEEEEcC----CCCeEEEccCCCcEEEeecccccchhhccc-----cccccceeeeEEC--CC
Confidence 334444555444 78999999999 799999999998 9999986666 33343 3789999999999 99
Q ss_pred CCcEEEEeecCCeEEEEEC-CCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccC
Q 016185 97 GIPFLVAGGINGIIRVIDV-SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQD 175 (394)
Q Consensus 97 ~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d 175 (394)
++ ++++++.|++|+|||+ ..+..++++.+|...|++++|+| .++++++|+. |
T Consensus 215 ~~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~-------------------------D 267 (456)
T KOG0266|consen 215 GS-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSD-------------------------D 267 (456)
T ss_pred Cc-EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecC-------------------------C
Confidence 99 9999999999999999 55689999999999999999999 5599999999 9
Q ss_pred CcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccc
Q 016185 176 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 255 (394)
Q Consensus 176 ~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (394)
++|++||++++++...+. +|.+.|++++|++ ++++|++++.|+.|++||+.++...
T Consensus 268 ~tvriWd~~~~~~~~~l~---~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~-------------------- 323 (456)
T KOG0266|consen 268 GTVRIWDVRTGECVRKLK---GHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL-------------------- 323 (456)
T ss_pred CcEEEEeccCCeEEEeee---ccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee--------------------
Confidence 999999999999999999 8999999999999 9999999999999999999995421
Q ss_pred cceeeeecCCCc--eEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCC---eEEEEEeecCCc
Q 016185 256 FPVFIASVHSNY--VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD---IWFIKFSCDFHY 328 (394)
Q Consensus 256 ~~~~~~~~~~~~--i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~ 328 (394)
....+..+... ++++.|+ +.+++++..|+.+++||+.... .+..+..|... +.+..+++.+
T Consensus 324 -~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-- 391 (456)
T KOG0266|consen 324 -CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK---------SVGTYTGHSNLVRCIFSPTLSTGG-- 391 (456)
T ss_pred -eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc---------ceeeecccCCcceeEecccccCCC--
Confidence 23344444444 8888887 8899999999999999999876 45566666553 3344455666
Q ss_pred ceEEEEeCCCcEEEEEecCCCceeeEEeccCCc-cCCeeEEEeccCCCEEEEec--cCCeEEEEEcC
Q 016185 329 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQS-KSPIRQTAMSYDGSTILSCC--EDGAIWRWDAI 392 (394)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~ 392 (394)
.++++|+.|+.|++||+.++. .+..+. +| ...+..++++|..+++++++ .|+.+++|...
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~--~~~~l~--~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGG--ILQRLE--GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeEEEEeCCceEEEEeCCccc--hhhhhc--CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 799999999999999999863 566666 77 88999999999999999998 79999999865
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.1e-40 Score=269.63 Aligned_cols=296 Identities=15% Similarity=0.279 Sum_probs=246.6
Q ss_pred ccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCC-CceeEEeeecccCCcccceEEEEEEEcCCCCc
Q 016185 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (394)
Q Consensus 22 ~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (394)
+-+..+.+.||+..|+++.|.| ..+.+|++++.|+ |+||++.. +++++++. +|..+|..++|+ .+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp---~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-----gH~k~Vrd~~~s--~~g~- 271 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFP---KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-----GHRKPVRDASFN--NCGT- 271 (503)
T ss_pred cHhheeeccCCccccchhhhcc---ceeeEEEecCCCceEEEEEEecCcceehhhh-----cchhhhhhhhcc--ccCC-
Confidence 4456778899999999999999 4799999999999 99999987 77888888 788999999998 9999
Q ss_pred EEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
.+++++.|+.|++||+++|+++..+. ....++|+.|+|++.+.+++|+. |+.|+
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~s-------------------------d~ki~ 325 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGS-------------------------DKKIR 325 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecC-------------------------CCcEE
Confidence 99999999999999999999999987 34678999999977789999998 99999
Q ss_pred EEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee
Q 016185 180 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 259 (394)
Q Consensus 180 vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (394)
.||+++++.++.+. .|-+.|..+.|-+ ++..+++.+.|+++++|+.+.+... +.+.
T Consensus 326 ~wDiRs~kvvqeYd---~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~i--------------------k~i~ 381 (503)
T KOG0282|consen 326 QWDIRSGKVVQEYD---RHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPI--------------------KNIA 381 (503)
T ss_pred EEeccchHHHHHHH---hhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccc--------------------hhhc
Confidence 99999999988887 7999999999999 9999999999999999999983210 0111
Q ss_pred eeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCC--CeEEEEEeecCCcceEEEEeCC
Q 016185 260 IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNRE 337 (394)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~d 337 (394)
....|..+-..+...+.+++.-+.|..|.+|.+...-+ ...-..+.+|.. --..+.||||| .+|++|..|
T Consensus 382 ~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r------~nkkK~feGh~vaGys~~v~fSpDG--~~l~SGdsd 453 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR------LNKKKRFEGHSVAGYSCQVDFSPDG--RTLCSGDSD 453 (503)
T ss_pred chhhccCcceecCCCCCeehhhccCceEEEEecccccc------cCHhhhhcceeccCceeeEEEcCCC--CeEEeecCC
Confidence 12223333333333388999999999999999765432 113445666643 34568899999 799999999
Q ss_pred CcEEEEEecCCCceeeEEeccCCccCCeeEEEeccC-CCEEEEeccCCeEEEEE
Q 016185 338 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWD 390 (394)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd 390 (394)
|.+.+||.++- .++..++ .|.+++..+.|+|. ...+|+|+.||.|++||
T Consensus 454 G~v~~wdwkt~--kl~~~lk--ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 454 GKVNFWDWKTT--KLVSKLK--AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccEEEeechhh--hhhhccc--cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999987 4677777 88999999999996 46899999999999996
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.7e-38 Score=269.05 Aligned_cols=313 Identities=17% Similarity=0.255 Sum_probs=260.6
Q ss_pred eeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCC--cEEEEEcCCCceeEEeeecccCC
Q 016185 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN--RVTVYQCLEGGVIAALQSYVDED 81 (394)
Q Consensus 4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d--~i~vw~~~~~~~~~~~~~~~~~~ 81 (394)
.++|-..+.-.++ ..+.+.+.+.+.-...+|..++|+. .|+.||.|+.. .+.||++.+...+...+ +
T Consensus 280 lvvgFssG~f~Ly--elP~f~lih~LSis~~~I~t~~~N~----tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-----g 348 (893)
T KOG0291|consen 280 LVVGFSSGEFGLY--ELPDFNLIHSLSISDQKILTVSFNS----TGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-----G 348 (893)
T ss_pred EEEEecCCeeEEE--ecCCceEEEEeecccceeeEEEecc----cCCEEEEcCCccceEEEEEeeccceeeecc-----c
Confidence 3445444443333 5678888999988889999999997 79999999987 49999999888877766 6
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
|-..+.+++++ |||+ ++++|+.||.|+|||..++-|..++..|+..|+.+.|+. .++.+++.+-
T Consensus 349 H~~~i~~l~YS--pDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSL------------ 412 (893)
T KOG0291|consen 349 HSDRITSLAYS--PDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSL------------ 412 (893)
T ss_pred cccceeeEEEC--CCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeec------------
Confidence 78889999888 9999 999999999999999999999999999999999999999 8899999999
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC-cEEEEEccccceeecccc
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~ 240 (394)
||+|+.||+...+..+++.. .......|++.+| .|.++.+|+.|. .|.+|++++++
T Consensus 413 -------------DGtVRAwDlkRYrNfRTft~--P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGq------- 469 (893)
T KOG0291|consen 413 -------------DGTVRAWDLKRYRNFRTFTS--PEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQ------- 469 (893)
T ss_pred -------------CCeEEeeeecccceeeeecC--CCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCe-------
Confidence 99999999999999999884 2345567899999 899899988875 59999999944
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeE
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 318 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 318 (394)
.+..+.+|.++|.+++|+ ++.|++++.|.+|++||+-.... .+.+++ ....+.
T Consensus 470 ----------------llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--------~vEtl~-i~sdvl 524 (893)
T KOG0291|consen 470 ----------------LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--------TVETLE-IRSDVL 524 (893)
T ss_pred ----------------eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc--------eeeeEe-ecccee
Confidence 578899999999998887 89999999999999999876532 222222 345789
Q ss_pred EEEEeecCCcceEEEEeCCCcEEEEEecCCCce--------------e--eEEeccCCccCCeeEEEeccCCCEEEEecc
Q 016185 319 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV--------------L--IARLSHAQSKSPIRQTAMSYDGSTILSCCE 382 (394)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------------~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 382 (394)
.++|.|+| ..+++++-||.|.+||....... . ..+-++.......+.+++++||.++++||.
T Consensus 525 ~vsfrPdG--~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 525 AVSFRPDG--KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred EEEEcCCC--CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 99999999 68999999999999998764211 0 001112233467899999999999999999
Q ss_pred CCeEEEEEcCC
Q 016185 383 DGAIWRWDAIP 393 (394)
Q Consensus 383 dg~i~iwd~~~ 393 (394)
...|++|++.+
T Consensus 603 sn~iCiY~v~~ 613 (893)
T KOG0291|consen 603 SNSICIYDVPE 613 (893)
T ss_pred cccEEEEECch
Confidence 99999999875
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-38 Score=234.07 Aligned_cols=283 Identities=20% Similarity=0.314 Sum_probs=240.8
Q ss_pred eeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEE
Q 016185 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (394)
Q Consensus 25 ~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 103 (394)
..+.+..|+++|.++.|+- +|++.++++.|+ |++|++..|..+++.. +|..+|..++.+ .|+. .+++
T Consensus 9 r~~~l~~~qgaV~avryN~----dGnY~ltcGsdrtvrLWNp~rg~liktYs-----ghG~EVlD~~~s--~Dns-kf~s 76 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNV----DGNYCLTCGSDRTVRLWNPLRGALIKTYS-----GHGHEVLDAALS--SDNS-KFAS 76 (307)
T ss_pred hceeecccccceEEEEEcc----CCCEEEEcCCCceEEeecccccceeeeec-----CCCceeeecccc--cccc-cccc
Confidence 4556789999999999998 899999999999 9999999999999998 788899888887 6777 8999
Q ss_pred eecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEe
Q 016185 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNV 183 (394)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~ 183 (394)
|+.|..+.+||+.+|+..+.+.+|...|+.++|+. +...+++|+. |.++++||.
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~Sgsf-------------------------D~s~r~wDC 130 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSF-------------------------DSSVRLWDC 130 (307)
T ss_pred CCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccc-------------------------cceeEEEEc
Confidence 99999999999999999999999999999999999 8899999999 999999999
Q ss_pred cCC--cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeee
Q 016185 184 QTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 261 (394)
Q Consensus 184 ~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (394)
++. ++++.+. .....|.++... +..+++|+.||+++.||++.+.. ..
T Consensus 131 RS~s~ePiQild---ea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l-------------------------~s 179 (307)
T KOG0316|consen 131 RSRSFEPIQILD---EAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTL-------------------------SS 179 (307)
T ss_pred ccCCCCccchhh---hhcCceeEEEec---ccEEEeeccCCcEEEEEeeccee-------------------------eh
Confidence 864 5677776 678899999985 46799999999999999999542 12
Q ss_pred ecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCc
Q 016185 262 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 339 (394)
Q Consensus 262 ~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 339 (394)
..-..+|+++.|+ ++..+.++.|+++++.|-.+++ ++..+.+|.+.-+.+..+-......+++|++||.
T Consensus 180 Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk---------lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~ 250 (307)
T KOG0316|consen 180 DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK---------LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK 250 (307)
T ss_pred hhcCCcceeEEecCCCCEEEEeeccceeeecccchhH---------HHHHhcccccceeeeeeeecccceeEEeccCCce
Confidence 2235678999997 8899999999999999999988 7899999988777666655554478999999999
Q ss_pred EEEEEecCCCceeeEEeccCCccCC-eeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 340 IFVWELQSSPPVLIARLSHAQSKSP-IRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
|++||+... ..+..++ .+... |.++.++|.-..|+++.. +.+..|-
T Consensus 251 Vy~wdLvd~--~~~sk~~--~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 251 VYFWDLVDE--TQISKLS--VVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred EEEEEeccc--eeeeeec--cCCceeEEeeecccCccceeEecC-Cceecee
Confidence 999999987 3566666 44555 899999998777777754 3455553
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3e-38 Score=242.99 Aligned_cols=252 Identities=17% Similarity=0.263 Sum_probs=218.0
Q ss_pred cccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC--c----eeEEeeecccCCcccceEEEEE
Q 016185 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--G----VIAALQSYVDEDKEESFYTVSW 91 (394)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~--~----~~~~~~~~~~~~~~~~v~~~~~ 91 (394)
....-+..+.+.-....|..+||+| .|+++|+|+-|. ..||++.+. + ..+++. +|.+-+.++.|
T Consensus 83 Ds~TtnK~haipl~s~WVMtCA~sP----Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-----gHtgylScC~f 153 (343)
T KOG0286|consen 83 DSFTTNKVHAIPLPSSWVMTCAYSP----SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-----GHTGYLSCCRF 153 (343)
T ss_pred EcccccceeEEecCceeEEEEEECC----CCCeEEecCcCceeEEEecccccccccceeeeeec-----CccceeEEEEE
Confidence 3333344455555678899999999 799999999998 899999854 2 222333 78999999988
Q ss_pred EEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceee
Q 016185 92 ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLR 171 (394)
Q Consensus 92 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~ 171 (394)
. .|+ .|+|++.|.+..+||+++++.+..|.+|.+.|.+++++|.+++.+++|+-
T Consensus 154 ~--dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c---------------------- 207 (343)
T KOG0286|consen 154 L--DDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC---------------------- 207 (343)
T ss_pred c--CCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc----------------------
Confidence 6 555 69999999999999999999999999999999999999988899999999
Q ss_pred eccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCc
Q 016185 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 251 (394)
Q Consensus 172 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 251 (394)
|+..++||++.+...+.|. +|+..|+++.|.| +|.-|++|+.|++.++||++..++
T Consensus 208 ---D~~aklWD~R~~~c~qtF~---ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~----------------- 263 (343)
T KOG0286|consen 208 ---DKSAKLWDVRSGQCVQTFE---GHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQE----------------- 263 (343)
T ss_pred ---ccceeeeeccCcceeEeec---ccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcE-----------------
Confidence 9999999999999999999 8999999999999 999999999999999999999442
Q ss_pred cccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcc
Q 016185 252 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 329 (394)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 329 (394)
..+..-..-...|++++|+ |++|++|..|.++.+||.-.++ .+..+.+|++.|.++..+||| .
T Consensus 264 ----~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e---------~vg~L~GHeNRvScl~~s~DG--~ 328 (343)
T KOG0286|consen 264 ----LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE---------RVGVLAGHENRVSCLGVSPDG--M 328 (343)
T ss_pred ----EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc---------eEEEeeccCCeeEEEEECCCC--c
Confidence 1222333344578999998 9999999999999999998776 678888999999999999999 7
Q ss_pred eEEEEeCCCcEEEEE
Q 016185 330 AAAIGNREGKIFVWE 344 (394)
Q Consensus 330 ~l~~~~~dg~i~iwd 344 (394)
.+++|+.|..++||.
T Consensus 329 av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 AVATGSWDSTLRIWA 343 (343)
T ss_pred EEEecchhHheeecC
Confidence 999999999999994
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.4e-37 Score=262.73 Aligned_cols=337 Identities=16% Similarity=0.253 Sum_probs=263.3
Q ss_pred eeeecCCCceeeeecc-----cccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeee
Q 016185 3 RTAIGCEPLVGSLTPS-----KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQS 76 (394)
Q Consensus 3 ~~a~g~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~ 76 (394)
+.|+||+......... ...+|.+.+++.+|-+.|.++.|+. |.++|++|+.|. ++||++...+.+...
T Consensus 110 ~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~----DSr~l~~gsrD~s~rl~~v~~~k~~~~~-- 183 (893)
T KOG0291|consen 110 FFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD----DSRLLVTGSRDLSARLFGVDGNKNLFTY-- 183 (893)
T ss_pred EEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEecc----CCceEEeccccceEEEEEeccccccceE--
Confidence 3566666554333222 3467888899999999999999997 789999999998 999998877653322
Q ss_pred cccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC-----------------------Cee-----E-EEE---
Q 016185 77 YVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-----------------------EKL-----H-KSF--- 124 (394)
Q Consensus 77 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----------------------~~~-----~-~~~--- 124 (394)
.-.+|.+.|-.+-|. .+.. -+++.+.||.+.+|.... ++. . ...
T Consensus 184 -~l~gHkd~VvacfF~--~~~~-~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~ 259 (893)
T KOG0291|consen 184 -ALNGHKDYVVACFFG--ANSL-DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKH 259 (893)
T ss_pred -eccCCCcceEEEEec--cCcc-eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEee
Confidence 223788888777665 7776 899999999999998751 111 0 011
Q ss_pred --EecCCceeEEEEcCCCCcEEEEcee--eeEEeec--------------cceeeeeeeccceee-ecc-CCcEEEEEec
Q 016185 125 --VGHGDSINEIRTQPLKPSLVVSASK--VIIISSL--------------SLICLLLFIRSNCLR-VGQ-DESVRLWNVQ 184 (394)
Q Consensus 125 --~~~~~~v~~~~~~~~~~~~l~s~~~--~i~~~~~--------------~~~~~~~~~~~~~~~-~~~-d~~i~vwd~~ 184 (394)
......|++.+|++ ..++|+++-. ...++.+ ...++.+...+..++ |+. -|.+-||+..
T Consensus 260 ~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 260 YLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred eecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 11236789999999 7788888754 3323332 224444554555444 333 3699999999
Q ss_pred CCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecC
Q 016185 185 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 264 (394)
Q Consensus 185 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (394)
+...+...+ +|...+++++++| ||.++++|+.||+|++||... ..++.++..|
T Consensus 339 sEsYVlKQQ---gH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~S-----------------------gfC~vTFteH 391 (893)
T KOG0291|consen 339 SESYVLKQQ---GHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQS-----------------------GFCFVTFTEH 391 (893)
T ss_pred ccceeeecc---ccccceeeEEECC-CCcEEEeccCCCcEEEEeccC-----------------------ceEEEEeccC
Confidence 988888887 8999999999999 999999999999999999999 6778999999
Q ss_pred CCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCC-CCeEEEEEeecCCcceEEEEeCCC-cE
Q 016185 265 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREG-KI 340 (394)
Q Consensus 265 ~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg-~i 340 (394)
+..|+.+.|. ++.+++++.||+|+.||+...+ ..+++..+. ....+++..|.| .++++|+.|. .|
T Consensus 392 ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr---------NfRTft~P~p~QfscvavD~sG--elV~AG~~d~F~I 460 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR---------NFRTFTSPEPIQFSCVAVDPSG--ELVCAGAQDSFEI 460 (893)
T ss_pred CCceEEEEEEecCCEEEEeecCCeEEeeeecccc---------eeeeecCCCceeeeEEEEcCCC--CEEEeeccceEEE
Confidence 9999999998 9999999999999999999765 455555543 245567777777 6788887775 69
Q ss_pred EEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 341 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
.+|++++++ ++..+. ||.+||.+++|+|++..||++|+|.+|++||+-
T Consensus 461 fvWS~qTGq--llDiLs--GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 461 FVWSVQTGQ--LLDILS--GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred EEEEeecCe--eeehhc--CCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 999999994 677777 999999999999999999999999999999973
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.7e-38 Score=235.15 Aligned_cols=280 Identities=14% Similarity=0.248 Sum_probs=236.9
Q ss_pred cccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCce--eEEeeecccCCcccceEEEEEEEcCC
Q 016185 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVD 96 (394)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (394)
....-...++++...+.|+.+...| ++..||+++.-.|++||+.++.+ +.++. .|...|.++.|. .+
T Consensus 26 qa~tG~C~rTiqh~dsqVNrLeiTp----dk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-----~h~kNVtaVgF~--~d 94 (311)
T KOG0315|consen 26 QALTGICSRTIQHPDSQVNRLEITP----DKKDLAAAGNQHVRLYDLNSNNPNPVATFE-----GHTKNVTAVGFQ--CD 94 (311)
T ss_pred ehhcCeEEEEEecCccceeeEEEcC----CcchhhhccCCeeEEEEccCCCCCceeEEe-----ccCCceEEEEEe--ec
Confidence 3344456677776678899999999 78999999999999999998764 56666 688899999988 88
Q ss_pred CCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 97 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
|+ ++++|++||+++|||++...+.+.++ |..+|+++..+| +...|++|.. +|
T Consensus 95 gr-WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dq-------------------------sg 146 (311)
T KOG0315|consen 95 GR-WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQ-------------------------SG 146 (311)
T ss_pred Ce-EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecC-------------------------CC
Confidence 99 99999999999999999977777776 779999999999 7788899998 99
Q ss_pred cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccc
Q 016185 177 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256 (394)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (394)
.|++||+.+..+...+.. .....|.+++..| ++.+++.+...|..++|++-..+.. ..-.
T Consensus 147 ~irvWDl~~~~c~~~liP--e~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~-----------------s~l~ 206 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIP--EDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTA-----------------SELE 206 (311)
T ss_pred cEEEEEccCCccccccCC--CCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCcc-----------------ccce
Confidence 999999998877666652 4557899999999 9999999999999999999883321 1245
Q ss_pred ceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEE
Q 016185 257 PVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 334 (394)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 334 (394)
|+..++.|...+....++ +++|++++.|.+++||+.++.- .....+.+|...++..+||.++ .||++|
T Consensus 207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~dg--~YlvTa 276 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSADG--EYLVTA 276 (311)
T ss_pred EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce--------eeEEEeecCCceEEeeeeccCc--cEEEec
Confidence 777899999999999998 7899999999999999998762 1456778899999999999999 699999
Q ss_pred eCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEec
Q 016185 335 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 371 (394)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 371 (394)
+.|+.+++|++..++ .+..+. +|.....+++..
T Consensus 277 ssd~~~rlW~~~~~k--~v~qy~--gh~K~~vc~~ln 309 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGK--EVRQYQ--GHHKAAVCVALN 309 (311)
T ss_pred CCCCceeecccccCc--eeeecC--CcccccEEEEee
Confidence 999999999999984 566666 777777777653
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-38 Score=252.74 Aligned_cols=294 Identities=17% Similarity=0.260 Sum_probs=239.2
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCce---eEEeeecccCCcccceEEEEEEEcCC
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV---IAALQSYVDEDKEESFYTVSWACNVD 96 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (394)
-+.+..+.+..|++.|.-+.||+ +|++||+++.|. ..+|.+..... .+++. +|..+|..+.|+ ||
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~----nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-----gh~~~V~yi~wS--PD 280 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSH----NGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-----GHSQPVSYIMWS--PD 280 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcC----CCeeEeeccCCceEEEEEEecCcceeeeeeee-----cccCceEEEEEC--CC
Confidence 34445567789999999999999 899999999998 88898765544 34444 788999999999 99
Q ss_pred CCcEEEEeecCCeEEEEECCCCeeEEEEE-ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccC
Q 016185 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQD 175 (394)
Q Consensus 97 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d 175 (394)
.+ +|++++.|..+.+||+.++.....+. +|...+.+++|.| ++..+++|+. |
T Consensus 281 dr-yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~-------------------------d 333 (519)
T KOG0293|consen 281 DR-YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSP-------------------------D 333 (519)
T ss_pred CC-eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCC-------------------------C
Confidence 99 99999999999999999999888776 3567899999999 8888999999 9
Q ss_pred CcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccc
Q 016185 176 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 255 (394)
Q Consensus 176 ~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (394)
+++..||++ |+.....+. .....|.+++..+ ||+++++.+.|..+++++..+..
T Consensus 334 r~i~~wdlD-gn~~~~W~g--vr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~---------------------- 387 (519)
T KOG0293|consen 334 RTIIMWDLD-GNILGNWEG--VRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARV---------------------- 387 (519)
T ss_pred CcEEEecCC-cchhhcccc--cccceeEEEEEcC-CCcEEEEEecccceeeechhhhh----------------------
Confidence 999999985 555555542 2335799999999 99999999999999999998822
Q ss_pred cceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCC-cceEE
Q 016185 256 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-YNAAA 332 (394)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~ 332 (394)
... +..-..+|+++..+ ++++++.-.+..+++||++..+ .++++.+|...-.-+.-+-.|. ..+++
T Consensus 388 -dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~---------lv~kY~Ghkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 388 -DRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK---------LVRKYFGHKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred -hhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh---------HHHHhhcccccceEEEeccCCCCcceEE
Confidence 111 22234567777776 7899999999999999999665 6888888876644443333322 16899
Q ss_pred EEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccC-CCEEEEeccCCeEEEEEcCC
Q 016185 333 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~ 393 (394)
+|++|+.|+||+..++ .++..+. ||...|++++|+|. ..++|+||+||+|+||...+
T Consensus 457 SGSED~kvyIWhr~sg--kll~~Ls--GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRISG--KLLAVLS--GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCceEEEEEccCC--ceeEeec--CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999998 4788888 99999999999995 56899999999999998753
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-37 Score=267.09 Aligned_cols=297 Identities=16% Similarity=0.240 Sum_probs=255.4
Q ss_pred cccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCC
Q 016185 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (394)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (394)
+..+.++.+.+-|..+.|..|.|-. ++.+++|.++... +++|+..+.... .+. +|++.|.+++.. ..|
T Consensus 309 d~~~l~i~k~ivG~ndEI~Dm~~lG---~e~~~laVATNs~~lr~y~~~~~~c~-ii~-----GH~e~vlSL~~~--~~g 377 (775)
T KOG0319|consen 309 DEDELTIVKQIVGYNDEILDMKFLG---PEESHLAVATNSPELRLYTLPTSYCQ-IIP-----GHTEAVLSLDVW--SSG 377 (775)
T ss_pred EccccEEehhhcCCchhheeeeecC---CccceEEEEeCCCceEEEecCCCceE-EEe-----Cchhheeeeeec--ccC
Confidence 4466777888889999999999974 2567888888877 999987776653 444 799999999844 567
Q ss_pred CcEEEEeecCCeEEEEECCCC----eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeec
Q 016185 98 IPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVG 173 (394)
Q Consensus 98 ~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~ 173 (394)
. +|+||+.|.++++|.++++ -++....+|.+.|.+++++.....+|+++|.
T Consensus 378 ~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~------------------------ 432 (775)
T KOG0319|consen 378 D-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ------------------------ 432 (775)
T ss_pred c-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC------------------------
Confidence 6 9999999999999988544 3456677999999999999877889999999
Q ss_pred cCCcEEEEEecCCcE---EEEee---ccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCC
Q 016185 174 QDESVRLWNVQTGIC---ILIFA---GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 247 (394)
Q Consensus 174 ~d~~i~vwd~~~~~~---~~~~~---~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 247 (394)
|+++++|++...+. ...+. ....|...|++++++| +..+++|||.|.+.++|++.+
T Consensus 433 -D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~---------------- 494 (775)
T KOG0319|consen 433 -DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ---------------- 494 (775)
T ss_pred -CceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccC----------------
Confidence 99999999976221 11110 1236999999999999 999999999999999999997
Q ss_pred CCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeec
Q 016185 248 KFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 325 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (394)
......+.+|...|+++.|+ .+.+++++.|++|++|.+.+.. +++++.+|.+.|..+.|-.+
T Consensus 495 -------~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS---------ClkT~eGH~~aVlra~F~~~ 558 (775)
T KOG0319|consen 495 -------LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS---------CLKTFEGHTSAVLRASFIRN 558 (775)
T ss_pred -------ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce---------eeeeecCccceeEeeeeeeC
Confidence 34577999999999999999 6699999999999999999887 89999999999999999999
Q ss_pred CCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 326 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 326 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
+ ..|++++.||-|++|++.+++ +...+. .|...|.+++-+|...++++|+.||.|.+|.=
T Consensus 559 ~--~qliS~~adGliKlWnikt~e--C~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 559 G--KQLISAGADGLIKLWNIKTNE--CEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred C--cEEEeccCCCcEEEEeccchh--hhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 9 689999999999999999984 678888 99999999999999999999999999999963
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.7e-39 Score=257.59 Aligned_cols=267 Identities=19% Similarity=0.358 Sum_probs=230.7
Q ss_pred eeeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCC
Q 016185 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (394)
Q Consensus 3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~ 81 (394)
|.-+|+..+. .+.|....+.+...+++|.++|+++.|++ +|.++++|+.++ |++|+..-. .++.++. .
T Consensus 110 RLltgs~SGE--FtLWNg~~fnFEtilQaHDs~Vr~m~ws~----~g~wmiSgD~gG~iKyWqpnmn-nVk~~~a----h 178 (464)
T KOG0284|consen 110 RLLTGSQSGE--FTLWNGTSFNFETILQAHDSPVRTMKWSH----NGTWMISGDKGGMIKYWQPNMN-NVKIIQA----H 178 (464)
T ss_pred eeEeeccccc--EEEecCceeeHHHHhhhhcccceeEEEcc----CCCEEEEcCCCceEEecccchh-hhHHhhH----h
Confidence 4455666555 44445566666666789999999999998 899999999999 999996543 3455553 4
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
|.+.|.+++|+ |+.. .+++++.||+|+|||....+..+.+.+|.-.|.+++|+| ...+++++++
T Consensus 179 h~eaIRdlafS--pnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgsk------------ 242 (464)
T KOG0284|consen 179 HAEAIRDLAFS--PNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSK------------ 242 (464)
T ss_pred hhhhhheeccC--CCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccC------------
Confidence 66899999998 7666 899999999999999998888899999999999999999 7789999999
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccc
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 241 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 241 (394)
|..|++||.++++++.++. +|+..|..+.|+| ++++|++++.|..++++|+++
T Consensus 243 -------------DnlVKlWDprSg~cl~tlh---~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~---------- 295 (464)
T KOG0284|consen 243 -------------DNLVKLWDPRSGSCLATLH---GHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRT---------- 295 (464)
T ss_pred -------------CceeEeecCCCcchhhhhh---hccceEEEEEEcC-CCCeeEEccCCceEEEEehhH----------
Confidence 9999999999999999998 8999999999999 889999999999999999997
Q ss_pred cCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeE
Q 016185 242 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 318 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 318 (394)
.+.+...++|...++++.|+ .++|.+|+.||.|..|.+...+. ....-..|...|+
T Consensus 296 -------------mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p--------~~~i~~AHd~~iw 354 (464)
T KOG0284|consen 296 -------------MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP--------LGEIPPAHDGEIW 354 (464)
T ss_pred -------------hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc--------ccCCCccccccee
Confidence 33577889999999999998 78999999999999999884442 2334457889999
Q ss_pred EEEEeecCCcceEEEEeCCCcEEEEEec
Q 016185 319 FIKFSCDFHYNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (394)
+++|+|-| .+|++|+.|.++++|.-.
T Consensus 355 sl~~hPlG--hil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 355 SLAYHPLG--HILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeccccc--eeEeecCCCcceeeeccC
Confidence 99999999 699999999999999754
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-37 Score=230.05 Aligned_cols=242 Identities=21% Similarity=0.331 Sum_probs=215.6
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
.++++|..+.+. -+|+ |.++++.|.+|++|+...+.+++++.+|..+|.+++.+. ++..+++|+.
T Consensus 15 ~~qgaV~avryN--~dGn-Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~Gg----------- 79 (307)
T KOG0316|consen 15 CAQGAVRAVRYN--VDGN-YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGG----------- 79 (307)
T ss_pred ccccceEEEEEc--cCCC-EEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCC-----------
Confidence 678899888877 8999 999999999999999999999999999999999999998 7788899888
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
|..+.+||+++|+..+.+. +|...|+.+.|+. +...+++|+.|.++++||.++..
T Consensus 80 --------------Dk~v~vwDV~TGkv~Rr~r---gH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s------- 134 (307)
T KOG0316|consen 80 --------------DKAVQVWDVNTGKVDRRFR---GHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS------- 134 (307)
T ss_pred --------------CceEEEEEcccCeeeeecc---cccceeeEEEecC-cceEEEeccccceeEEEEcccCC-------
Confidence 9999999999999999999 8999999999998 89999999999999999999843
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 320 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (394)
.+|+..+....+.|.++...+..+++|+.||+++.||++.+. ....+-+ .+|+++
T Consensus 135 --------------~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~---------l~sDy~g--~pit~v 189 (307)
T KOG0316|consen 135 --------------FEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGT---------LSSDYFG--HPITSV 189 (307)
T ss_pred --------------CCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecce---------eehhhcC--CcceeE
Confidence 467888888899999999999999999999999999999886 3344443 489999
Q ss_pred EEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccC--CeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 321 KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS--PIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
.|++++ +..+.++.|+++++.|-.+++ ++..+. +|.. .=...+++.....+++|++||.|++||+.+
T Consensus 190 s~s~d~--nc~La~~l~stlrLlDk~tGk--lL~sYk--Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 190 SFSKDG--NCSLASSLDSTLRLLDKETGK--LLKSYK--GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred EecCCC--CEEEEeeccceeeecccchhH--HHHHhc--ccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 999999 689999999999999999984 666666 5544 345567788888999999999999999864
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-37 Score=244.81 Aligned_cols=265 Identities=19% Similarity=0.308 Sum_probs=236.6
Q ss_pred eeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCC-CceeEEeeecccCC
Q 016185 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDED 81 (394)
Q Consensus 4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~-~~~~~~~~~~~~~~ 81 (394)
++++.++..+...+.... ++.+.|+||.++|..|+|+. .|+++|+++.|- +.+||..+ .++++.+. +
T Consensus 123 v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a----~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~-----g 191 (406)
T KOG0295|consen 123 VVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDA----SGKYLATCSSDLSAKLWDFDTFFRCIKSLI-----G 191 (406)
T ss_pred EEEecCCceEEEEEccch--hhhhhhhccccceeEEEEec----CccEEEecCCccchhheeHHHHHHHHHHhc-----C
Confidence 455666777666655544 44788999999999999997 799999999998 99999876 44555555 6
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
|+..|.+++|- |.|. ++++++.|.+|+.|++.++-++.++.+|...|..++.+. ++.++++++.
T Consensus 192 h~h~vS~V~f~--P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~------------ 255 (406)
T KOG0295|consen 192 HEHGVSSVFFL--PLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSN------------ 255 (406)
T ss_pred cccceeeEEEE--ecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCC------------
Confidence 88899999998 8888 999999999999999999999999999999999999998 8899999999
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCC--------------CCeeEEeeccCCcEEEE
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS--------------DIYRIASCGMDNTVKIW 227 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~s~~~dg~v~iw 227 (394)
|.+|++|-+.++++...++ .|+.+|.+++|.|. .+.++.+++.|++|++|
T Consensus 256 -------------dqtl~vW~~~t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 256 -------------DQTLRVWVVATKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred -------------CceEEEEEeccchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 9999999999999888888 89999999999872 23589999999999999
Q ss_pred EccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcce
Q 016185 228 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD 305 (394)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 305 (394)
|+.+ ...+.++.+|.++|..++|+ |+||+++..|+++++||+++.+
T Consensus 320 dv~t-----------------------g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~--------- 367 (406)
T KOG0295|consen 320 DVST-----------------------GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ--------- 367 (406)
T ss_pred eccC-----------------------CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce---------
Confidence 9999 45688999999999999999 9999999999999999999887
Q ss_pred ecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 306 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 306 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
++..+..|+.-++++.|..+. .++++|+-|..+++|..
T Consensus 368 cmk~~~ah~hfvt~lDfh~~~--p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 368 CMKTLEAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeccCCCcceeEEEecCCCC--ceEEeccccceeeeeec
Confidence 788888999999999999998 69999999999999974
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.7e-37 Score=264.62 Aligned_cols=253 Identities=21% Similarity=0.355 Sum_probs=221.1
Q ss_pred EecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCcee
Q 016185 54 TVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN 132 (394)
Q Consensus 54 s~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 132 (394)
+.+.|- +.+.|..+.....++. +|.++|+.+.|+ |+.+ +|++++.|+++|+|.+.+..++-.+++|..+|+
T Consensus 426 ~~sad~~~~~~D~~~~~~~~~L~-----GH~GPVyg~sFs--Pd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVw 497 (707)
T KOG0263|consen 426 TESADVDVDMLDDDSSGTSRTLY-----GHSGPVYGCSFS--PDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVW 497 (707)
T ss_pred ccccchhhhhccccCCceeEEee-----cCCCceeeeeec--cccc-ceeeccCCcceeeeecccceeEEEecCCCccee
Confidence 344444 6777766666666666 799999999998 9999 999999999999999999999999999999999
Q ss_pred EEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCC
Q 016185 133 EIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 212 (394)
Q Consensus 133 ~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 212 (394)
++.|+| .+.++||++. |++.++|......+.+.+. +|.+.|.|+.|+| +.
T Consensus 498 dV~F~P-~GyYFatas~-------------------------D~tArLWs~d~~~PlRifa---ghlsDV~cv~FHP-Ns 547 (707)
T KOG0263|consen 498 DVQFAP-RGYYFATASH-------------------------DQTARLWSTDHNKPLRIFA---GHLSDVDCVSFHP-NS 547 (707)
T ss_pred eEEecC-CceEEEecCC-------------------------CceeeeeecccCCchhhhc---ccccccceEEECC-cc
Confidence 999999 7899999999 9999999999989999888 8999999999999 99
Q ss_pred eeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEe
Q 016185 213 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW 290 (394)
Q Consensus 213 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~ 290 (394)
+++++||.|.+||+||+.+ +..++.+.+|..+|.+++|+ |.+|++|+.||.|++|
T Consensus 548 ~Y~aTGSsD~tVRlWDv~~-----------------------G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDVST-----------------------GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred cccccCCCCceEEEEEcCC-----------------------CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE
Confidence 9999999999999999999 44688999999999999998 9999999999999999
Q ss_pred cCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCce-------------------
Q 016185 291 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV------------------- 351 (394)
Q Consensus 291 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------- 351 (394)
|+.+++ .+..+.+|.+.|.++.|+.++ ..|++|+.|++|++||+......
T Consensus 605 Dl~~~~---------~v~~l~~Ht~ti~SlsFS~dg--~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (707)
T KOG0263|consen 605 DLANGS---------LVKQLKGHTGTIYSLSFSRDG--NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNA 673 (707)
T ss_pred EcCCCc---------chhhhhcccCceeEEEEecCC--CEEEecCCCCeEEEEEchhhcccccccccccccccccccCCC
Confidence 999887 788899999999999999999 79999999999999998653211
Q ss_pred ---eeEEeccCCccCCeeEEEeccCCCEEEEe
Q 016185 352 ---LIARLSHAQSKSPIRQTAMSYDGSTILSC 380 (394)
Q Consensus 352 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 380 (394)
++..+. ....+|..+.|....-.|+.|
T Consensus 674 ~~~llgs~~--tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 674 SSLLLGSFY--TKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred Ccceeeeee--ecCceEEEEEEeccceeEEec
Confidence 233333 344678888888765555544
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-36 Score=264.56 Aligned_cols=308 Identities=17% Similarity=0.252 Sum_probs=253.6
Q ss_pred eccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 29 ~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
++..+..|..++|+| ...++.++-..+ |.+||.+-+..+..+. .|+++|..++|. |.+. ++++|+.|
T Consensus 5 fEskSsRvKglsFHP----~rPwILtslHsG~IQlWDYRM~tli~rFd-----eHdGpVRgv~FH--~~qp-lFVSGGDD 72 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHP----KRPWILTSLHSGVIQLWDYRMGTLIDRFD-----EHDGPVRGVDFH--PTQP-LFVSGGDD 72 (1202)
T ss_pred hhcccccccceecCC----CCCEEEEeecCceeeeehhhhhhHHhhhh-----ccCCccceeeec--CCCC-eEEecCCc
Confidence 445577899999999 567788877777 9999999998888887 799999999988 8888 99999999
Q ss_pred CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
-.|+||+.++.+++.++.+|-+.|..+.|++ .-..++|+|+ |.+|+||+..+++
T Consensus 73 ykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASD-------------------------DQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASD-------------------------DQTIRIWNWQSRK 126 (1202)
T ss_pred cEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccC-------------------------CCeEEEEeccCCc
Confidence 9999999999999999999999999999999 7789999999 9999999999999
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCC----C--CCCCccccccceeee
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL----P--SKFPTKYVQFPVFIA 261 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~ 261 (394)
++..+. +|...|.|..|+| ...+++++|.|.+||+||+...++.....-..... . ..+-...-......+
T Consensus 127 ~iavlt---GHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 127 CIAVLT---GHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred eEEEEe---cCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 999999 9999999999999 88999999999999999998854322111100000 0 000000111223478
Q ss_pred ecCCCceEEEEEeC--cEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCc
Q 016185 262 SVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 339 (394)
Q Consensus 262 ~~~~~~i~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 339 (394)
++|...|..++|++ ..+++|+.|..|++|.+...+ .-.+.+..+|.+.|.++-|+|.. .++++.++|++
T Consensus 203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-------aWEvDtcrgH~nnVssvlfhp~q--~lIlSnsEDks 273 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-------AWEVDTCRGHYNNVSSVLFHPHQ--DLILSNSEDKS 273 (1202)
T ss_pred cccccccceEEecCCcceEEecCCcceeeEEEecccc-------ceeehhhhcccCCcceEEecCcc--ceeEecCCCcc
Confidence 89999999999997 799999999999999988654 22466788999999999999988 69999999999
Q ss_pred EEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 340 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
|++||+.... .+..+. -..+....++-+|..+++|.|. |+-+.||.++
T Consensus 274 irVwDm~kRt--~v~tfr--rendRFW~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 274 IRVWDMTKRT--SVQTFR--RENDRFWILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred EEEEeccccc--ceeeee--ccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence 9999999874 456665 2346888999999999888775 5555666654
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-35 Score=252.34 Aligned_cols=337 Identities=17% Similarity=0.221 Sum_probs=248.2
Q ss_pred eeeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCC
Q 016185 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (394)
Q Consensus 3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~ 81 (394)
..|+|.+++.+.+...... .+.-++.||..+|+++.|.. .|..||+|+.|+ |.+||+-...-+..+. +
T Consensus 79 ~lAVGYaDGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~----~G~rlaSGskDt~IIvwDlV~E~Gl~rL~-----G 147 (888)
T KOG0306|consen 79 LLAVGYADGSVQIFSLESE--EILITFNGHKAAVTTLKFDK----IGTRLASGSKDTDIIVWDLVGEEGLFRLR-----G 147 (888)
T ss_pred eEEEEecCceEEeeccCCC--ceeeeecccccceEEEEEcc----cCceEeecCCCccEEEEEeccceeeEEee-----c
Confidence 3599999999999877655 56667899999999999997 799999999999 9999998877777777 6
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEcee--eeEEeeccc-
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--VIIISSLSL- 158 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--~i~~~~~~~- 158 (394)
|.+.|+..-|. .+.+ +|++.+.|+.|++||+++..+..+.-.|.+.|+.+++.+ +.+++++. .+++|.+.+
T Consensus 148 Hkd~iT~~~F~--~~~~-~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 148 HKDSITQALFL--NGDS-FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred chHHHhHHhcc--CCCe-EEEEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecc
Confidence 88888877665 5455 999999999999999999999999999999999999987 34444433 666666500
Q ss_pred --------------------------------------------------------------------------------
Q 016185 159 -------------------------------------------------------------------------------- 158 (394)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (394)
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence
Q ss_pred ---------------------------------------------------------------------------eeeee
Q 016185 159 ---------------------------------------------------------------------------ICLLL 163 (394)
Q Consensus 159 ---------------------------------------------------------------------------~~~~~ 163 (394)
....+
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 00000
Q ss_pred eeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccC
Q 016185 164 FIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 243 (394)
Q Consensus 164 ~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 243 (394)
..+..++..+..+++++|+..+.++++++. ...+.+..|.| .++++++|...|.+.+||+.+
T Consensus 382 S~d~~~~~Sga~~SikiWn~~t~kciRTi~-----~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS------------ 443 (888)
T KOG0306|consen 382 SSDSILLASGAGESIKIWNRDTLKCIRTIT-----CGYILASKFVP-GDRYIVLGTKNGELQVFDLAS------------ 443 (888)
T ss_pred ecCceeeeecCCCcEEEEEccCcceeEEec-----cccEEEEEecC-CCceEEEeccCCceEEEEeeh------------
Confidence 001122223334455555555555555553 12455555555 555555555555555555555
Q ss_pred CCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcc--ee--cccccCCCCCe
Q 016185 244 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA--DI--LQKYPVPECDI 317 (394)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~--~~~~~~~~~~i 317 (394)
...+..++.|.+.|++++.. +..+++|+.|.+|++||..-....+..... .. -+.+ .-...|
T Consensus 444 -----------~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddv 511 (888)
T KOG0306|consen 444 -----------ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDV 511 (888)
T ss_pred -----------hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccE
Confidence 33455677899999999986 779999999999999998644321111100 00 0111 124579
Q ss_pred EEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 318 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
.++.+|||+ .+|+++--|++++||-+++- +....+. ||.-||.+|.+|||+++++|||.|.+|+||-+.
T Consensus 512 L~v~~Spdg--k~LaVsLLdnTVkVyflDtl--KFflsLY--GHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 512 LCVSVSPDG--KLLAVSLLDNTVKVYFLDTL--KFFLSLY--GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEEEEcCCC--cEEEEEeccCeEEEEEecce--eeeeeec--ccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 999999999 79999999999999999987 3556666 999999999999999999999999999999764
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.6e-37 Score=241.31 Aligned_cols=240 Identities=20% Similarity=0.377 Sum_probs=220.0
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
+|.+-|.++++. |.++ ++++|+.|++++|||+.++++..++.+|...|..+++++ -..++++++.
T Consensus 149 gHlgWVr~vavd--P~n~-wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~ge----------- 213 (460)
T KOG0285|consen 149 GHLGWVRSVAVD--PGNE-WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGE----------- 213 (460)
T ss_pred hccceEEEEeeC--CCce-eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecC-----------
Confidence 788899999988 7777 999999999999999999999999999999999999999 6789999999
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
|+.|+.||++..+.++.+. +|-+.|+|++.+| .-..|++|+.|.++++||+++
T Consensus 214 --------------dk~VKCwDLe~nkvIR~Yh---GHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRt--------- 266 (460)
T KOG0285|consen 214 --------------DKQVKCWDLEYNKVIRHYH---GHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRT--------- 266 (460)
T ss_pred --------------CCeeEEEechhhhhHHHhc---cccceeEEEeccc-cceeEEecCCcceEEEeeecc---------
Confidence 9999999999999999988 8999999999999 888999999999999999999
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeE
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 318 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 318 (394)
..++..+.+|...|..+.+. ...+++|+.|++|++||++.++ .+..+..|...+.
T Consensus 267 --------------r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk---------t~~tlt~hkksvr 323 (460)
T KOG0285|consen 267 --------------RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK---------TMITLTHHKKSVR 323 (460)
T ss_pred --------------cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc---------eeEeeecccceee
Confidence 56799999999999999998 7799999999999999999887 6778888999999
Q ss_pred EEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 319 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+++.+|.. ..+|+++.|. |+-|++..++ .+..+. +|..-|++++...|+ ++++|+++|.+..||.++
T Consensus 324 al~lhP~e--~~fASas~dn-ik~w~~p~g~--f~~nls--gh~~iintl~~nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 324 ALCLHPKE--NLFASASPDN-IKQWKLPEGE--FLQNLS--GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred EEecCCch--hhhhccCCcc-ceeccCCccc--hhhccc--cccceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence 99999998 6888888775 9999999884 556666 999999999998775 788999999999999764
No 43
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-36 Score=246.63 Aligned_cols=279 Identities=19% Similarity=0.330 Sum_probs=237.6
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~v 112 (394)
.++|.+++|+|. ...-+|+++.-++.||+..+....+.+.. ....+++++|. .||+ +|++|...|.|+|
T Consensus 26 ~~~vssl~fsp~---~P~d~aVt~S~rvqly~~~~~~~~k~~sr-----Fk~~v~s~~fR--~DG~-LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 26 HNSVSSLCFSPK---HPYDFAVTSSVRVQLYSSVTRSVRKTFSR-----FKDVVYSVDFR--SDGR-LLAAGDESGHVKV 94 (487)
T ss_pred cCcceeEecCCC---CCCceEEecccEEEEEecchhhhhhhHHh-----hccceeEEEee--cCCe-EEEccCCcCcEEE
Confidence 468999999993 45668888888899999888887777774 45678899988 9999 9999999999999
Q ss_pred EECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEe
Q 016185 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIF 192 (394)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~ 192 (394)
||..+...++.+.+|+.+|..+.|+|+++..+++|++ |+.+++||+.+......+
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD-------------------------d~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD-------------------------DKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred eccccHHHHHHHhhccCceeEEEecccCCeEEEecCC-------------------------CceEEEEEcCCcEEEEEe
Confidence 9987777889999999999999999999999999999 999999999988865566
Q ss_pred eccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEE
Q 016185 193 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 272 (394)
Q Consensus 193 ~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 272 (394)
. +|++.|.|.+|+|.++.+++||++||.|++||.+.. .+...-..|..+|..+.
T Consensus 150 ~---~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-----------------------~~~v~elnhg~pVe~vl 203 (487)
T KOG0310|consen 150 S---GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL-----------------------TSRVVELNHGCPVESVL 203 (487)
T ss_pred c---CCcceeEeeccccCCCeEEEecCCCceEEEEEeccC-----------------------CceeEEecCCCceeeEE
Confidence 6 899999999999978889999999999999999992 12333345888999998
Q ss_pred Ee--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCc
Q 016185 273 WL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 350 (394)
Q Consensus 273 ~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 350 (394)
+- |..+++++ ...+++||+-++.+ .+.....|...|+|+++..++ ..|++|+-|+.+++||+.+.
T Consensus 204 ~lpsgs~iasAg-Gn~vkVWDl~~G~q--------ll~~~~~H~KtVTcL~l~s~~--~rLlS~sLD~~VKVfd~t~~-- 270 (487)
T KOG0310|consen 204 ALPSGSLIASAG-GNSVKVWDLTTGGQ--------LLTSMFNHNKTVTCLRLASDS--TRLLSGSLDRHVKVFDTTNY-- 270 (487)
T ss_pred EcCCCCEEEEcC-CCeEEEEEecCCce--------ehhhhhcccceEEEEEeecCC--ceEeecccccceEEEEccce--
Confidence 86 56777765 56899999997653 556666699999999999988 68999999999999997776
Q ss_pred eeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEE
Q 016185 351 VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 351 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 389 (394)
+.+..+..+ ++|.+++.+|+++.++.|..||.+.+=
T Consensus 271 Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 271 KVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred EEEEeeecc---cceeeEEecCCCceEEEecccceeeee
Confidence 355555433 799999999999999999999987653
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6e-37 Score=230.88 Aligned_cols=287 Identities=16% Similarity=0.245 Sum_probs=240.5
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 106 (394)
+..||+.+|..++|||.- ++|-+|++++.|+ -.+-+-.+|.-+.++. +|++.|+..++. .+.. ..++++.
T Consensus 9 ~c~ghtrpvvdl~~s~it-p~g~flisa~kd~~pmlr~g~tgdwigtfe-----ghkgavw~~~l~--~na~-~aasaaa 79 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPIT-PDGYFLISASKDGKPMLRNGDTGDWIGTFE-----GHKGAVWSATLN--KNAT-RAASAAA 79 (334)
T ss_pred EEcCCCcceeEEeccCCC-CCceEEEEeccCCCchhccCCCCCcEEeee-----ccCcceeeeecC--chhh-hhhhhcc
Confidence 457999999999999833 3799999999998 7778888999999998 789999998876 6666 7889999
Q ss_pred CCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC
Q 016185 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG 186 (394)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~ 186 (394)
|-+-+|||.-++..+.++. |..-|..++|+. +.+.|++|+. +..++|||++..
T Consensus 80 dftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~-------------------------ekllrvfdln~p 132 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQ-------------------------EKLLRVFDLNRP 132 (334)
T ss_pred cchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccch-------------------------HHHhhhhhccCC
Confidence 9999999999999999987 888999999999 7889999999 999999999865
Q ss_pred c-EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 187 I-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 187 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
+ +...+. +|.+.|..+.|.. ..+.|++.+.|++||+||.+++. .+..+. -+
T Consensus 133 ~App~E~~---ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt-----------------------~v~sL~-~~ 184 (334)
T KOG0278|consen 133 KAPPKEIS---GHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGT-----------------------EVQSLE-FN 184 (334)
T ss_pred CCCchhhc---CCCCcceeEEEec-cCceEEeeccCCceEEEEeccCc-----------------------EEEEEe-cC
Confidence 4 455566 8999999999998 77888888999999999999944 344443 34
Q ss_pred CceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEE
Q 016185 266 NYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 344 (394)
Q Consensus 266 ~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd 344 (394)
..|.++..+ ...+++....+.|.+||..+.. .++.+..+ ..|.+..++|+. ..+++|++|..++.||
T Consensus 185 s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~---------~lKs~k~P-~nV~SASL~P~k--~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG---------LLKSYKMP-CNVESASLHPKK--EFFVAGGEDFKVYKFD 252 (334)
T ss_pred CCCcceeeccCCCEEEEecCceeEEecccccc---------ceeeccCc-cccccccccCCC--ceEEecCcceEEEEEe
Confidence 567777776 3445555778899999999775 45555443 568899999999 6899999999999999
Q ss_pred ecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 345 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
..+++ .+..+ ..+|.++|.++.|+|||..-|+||.||+|++|...+
T Consensus 253 y~Tge--Ei~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 253 YNTGE--EIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ccCCc--eeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 99985 33333 248999999999999999999999999999998753
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.4e-35 Score=234.80 Aligned_cols=284 Identities=17% Similarity=0.264 Sum_probs=233.0
Q ss_pred cCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCe
Q 016185 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 109 (394)
-|.+.|.++...+ +.+.+|+.|+ +++|| ..|+....+. +|.++|..++|....+....+++++.|.+
T Consensus 103 ~hdDWVSsv~~~~------~~IltgsYDg~~riWd-~~Gk~~~~~~-----Ght~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS------KWILTGSYDGTSRIWD-LKGKSIKTIV-----GHTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred cchhhhhhhcccC------ceEEEeecCCeeEEEe-cCCceEEEEe-----cCCcceeeeEEEecCCccceEEEecCCce
Confidence 4888899888764 6899999999 99999 6777777777 78999998888754443337999999999
Q ss_pred EEEEECCCCee----EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC
Q 016185 110 IRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT 185 (394)
Q Consensus 110 i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~ 185 (394)
+++|.++.++. +...+||...|.+++..+ ++..+++|+. |.+|++|+..+
T Consensus 171 l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~-------------------------D~~lkiWs~~~ 224 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSW-------------------------DTMLKIWSVET 224 (423)
T ss_pred EEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecc-------------------------cceeeecccCC
Confidence 99999887643 344459999999999999 8899999999 99999999321
Q ss_pred -------------------------CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 186 -------------------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 186 -------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
+.++..+. +|..+|.++.|++ ...+++++.|.+|+.||+.++..
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~---GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~------ 293 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLE---GHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL------ 293 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEec---ccccceeeEEEcC--CCceEeecccceEEEEEeecccc------
Confidence 12233343 8999999999995 67799999999999999999542
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeE
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 318 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 318 (394)
+..+. .+..+.++.+. .++|++|+.|..|++||.+++.- .-....+.+|.+.|.
T Consensus 294 -----------------~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g------s~v~~s~~gH~nwVs 349 (423)
T KOG0313|consen 294 -----------------KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG------SVVSQSLIGHKNWVS 349 (423)
T ss_pred -----------------eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCC------ceeEEeeecchhhhh
Confidence 22222 34556777776 67999999999999999998752 225678899999999
Q ss_pred EEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 319 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
++.|+|... ..|++|+.|+++++||+++.. ..+..+. +|...|.++.|. ++.++++||.|.+|+|+.-.
T Consensus 350 svkwsp~~~-~~~~S~S~D~t~klWDvRS~k-~plydI~--~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 350 SVKWSPTNE-FQLVSGSYDNTVKLWDVRSTK-APLYDIA--GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred heecCCCCc-eEEEEEecCCeEEEEEeccCC-Ccceeec--cCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999987 589999999999999999875 3566777 899999999998 56799999999999998754
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=254.44 Aligned_cols=287 Identities=18% Similarity=0.272 Sum_probs=247.2
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
.+.||+..|.+++||. +...+++|+.+.+++|+..+.++++++.. +-+.+..|. |.++ ++++|...
T Consensus 368 ~~~GHR~dVRsl~vS~----d~~~~~Sga~~SikiWn~~t~kciRTi~~-------~y~l~~~Fv--pgd~-~Iv~G~k~ 433 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSS----DSILLASGAGESIKIWNRDTLKCIRTITC-------GYILASKFV--PGDR-YIVLGTKN 433 (888)
T ss_pred eeccchhheeEEEeec----CceeeeecCCCcEEEEEccCcceeEEecc-------ccEEEEEec--CCCc-eEEEeccC
Confidence 4579999999999997 67788888888899999999999998872 234444444 8888 99999999
Q ss_pred CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC--
Q 016185 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT-- 185 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~-- 185 (394)
|.+.+||+.+...+.++++|.+.|++++.+| ++..+++|+. |.+|++||..-
T Consensus 434 Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~sa-------------------------DktVkfWdf~l~~ 487 (888)
T KOG0306|consen 434 GELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSA-------------------------DKTVKFWDFKLVV 487 (888)
T ss_pred CceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecC-------------------------CcEEEEEeEEEEe
Confidence 9999999999999999999999999999999 7889999999 99999999752
Q ss_pred ---CcEEEEeecc----CCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccce
Q 016185 186 ---GICILIFAGA----GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 258 (394)
Q Consensus 186 ---~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
|...+.+... -.-+..|.|+.++| |+.+|+++=.|.+|++|-+.+.+ -.
T Consensus 488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlK-----------------------Ff 543 (888)
T KOG0306|consen 488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLK-----------------------FF 543 (888)
T ss_pred ccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEeccee-----------------------ee
Confidence 2211111100 02467899999999 99999999999999999999943 35
Q ss_pred eeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC
Q 016185 259 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 336 (394)
Q Consensus 259 ~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 336 (394)
..+.+|.-+|.|+..+ ++.+++|+.|..|++|-++-+. +-+.+.+|...|.++.|.|.. ..+.+++.
T Consensus 544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD---------CHKS~fAHdDSvm~V~F~P~~--~~FFt~gK 612 (888)
T KOG0306|consen 544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD---------CHKSFFAHDDSVMSVQFLPKT--HLFFTCGK 612 (888)
T ss_pred eeecccccceeEEeccCCcCeEEeccCCCceEEeccccch---------hhhhhhcccCceeEEEEcccc--eeEEEecC
Confidence 5789999999999887 8899999999999999999665 788999999999999999987 68999999
Q ss_pred CCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 337 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
|+.|+-||-..- ..+..+. +|...|.+++.+|+|.+++++|.|.+|++|.-..
T Consensus 613 D~kvKqWDg~kF--e~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 613 DGKVKQWDGEKF--EEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cceEEeechhhh--hhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999998876 4677787 9999999999999999999999999999998643
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-37 Score=244.71 Aligned_cols=266 Identities=18% Similarity=0.338 Sum_probs=228.7
Q ss_pred ecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCccc
Q 016185 6 IGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEE 84 (394)
Q Consensus 6 ~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~ 84 (394)
.|-.+..+.+ |....+...+.|.||++.|.|+.|. .+++++|+.|. |+|||+.+|+++.++- +|.+
T Consensus 212 SGlrDnTiki--WD~n~~~c~~~L~GHtGSVLCLqyd------~rviisGSSDsTvrvWDv~tge~l~tli-----hHce 278 (499)
T KOG0281|consen 212 SGLRDNTIKI--WDKNSLECLKILTGHTGSVLCLQYD------ERVIVSGSSDSTVRVWDVNTGEPLNTLI-----HHCE 278 (499)
T ss_pred cccccCceEE--eccccHHHHHhhhcCCCcEEeeecc------ceEEEecCCCceEEEEeccCCchhhHHh-----hhcc
Confidence 3445555444 4666777888899999999999997 46999999998 9999999999998887 6888
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCe---eEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
.|..+.|+ +. ++++++.|.++.|||+.... +.+.+.+|...|+.+.|+. .++++++.
T Consensus 279 aVLhlrf~----ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASg------------ 338 (499)
T KOG0281|consen 279 AVLHLRFS----NG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASG------------ 338 (499)
T ss_pred eeEEEEEe----CC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecC------------
Confidence 99888886 33 89999999999999997653 4566789999999999975 69999999
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccc
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 241 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 241 (394)
|.+|++|++.+++.++.+. +|...|-|+.+ .++++++|+.|.+|++||+..
T Consensus 339 -------------DRTikvW~~st~efvRtl~---gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~---------- 389 (499)
T KOG0281|consen 339 -------------DRTIKVWSTSTCEFVRTLN---GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC---------- 389 (499)
T ss_pred -------------CceEEEEeccceeeehhhh---cccccceehhc---cCeEEEecCCCceEEEEeccc----------
Confidence 9999999999999999999 89999999987 578999999999999999999
Q ss_pred cCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEE
Q 016185 242 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 321 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 321 (394)
+..+..+++|.+-|.|+.|+.+.+++|+.||+|++||+.....+......-++.....|.+.|..+.
T Consensus 390 -------------G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 390 -------------GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred -------------cHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 5568899999999999999999999999999999999998876544444446667777888899888
Q ss_pred EeecCCcceEEEEeCCCcEEEEEecCCCc
Q 016185 322 FSCDFHYNAAAIGNREGKIFVWELQSSPP 350 (394)
Q Consensus 322 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 350 (394)
|.. ..+++.+.|.+|.|||+..+.+
T Consensus 457 FD~----fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 457 FDE----FQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ecc----eEEEeccCCCeEEEEEcCCCCc
Confidence 864 4588999999999999988753
No 48
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-35 Score=222.90 Aligned_cols=291 Identities=17% Similarity=0.203 Sum_probs=235.0
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 106 (394)
.++||..+++.|.|+. +|++|.+++.|. ..||-...|+.+.++. +|.+.|++++.. -+.+ .|++|+.
T Consensus 5 ~l~GHERplTqiKyN~----eGDLlFscaKD~~~~vw~s~nGerlGty~-----GHtGavW~~Did--~~s~-~liTGSA 72 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR----EGDLLFSCAKDSTPTVWYSLNGERLGTYD-----GHTGAVWCCDID--WDSK-HLITGSA 72 (327)
T ss_pred ccccCccccceEEecC----CCcEEEEecCCCCceEEEecCCceeeeec-----CCCceEEEEEec--CCcc-eeeeccc
Confidence 3689999999999997 899999999999 9999988999999998 799999999988 7777 9999999
Q ss_pred CCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec--
Q 016185 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ-- 184 (394)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~-- 184 (394)
|.++++||+++|+++.+++ -..+|..+.|++ ++++++...+ =..+..+.|.++|++
T Consensus 73 D~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD--------------------~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWK-TNSPVKRVDFSF-GGNLILASTD--------------------KQMGYTCFVSVFDIRDD 130 (327)
T ss_pred cceeEEEEcCCCcEEEEee-cCCeeEEEeecc-CCcEEEEEeh--------------------hhcCcceEEEEEEccCC
Confidence 9999999999999999998 457899999999 5565554443 011225679999998
Q ss_pred -----CCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee
Q 016185 185 -----TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 259 (394)
Q Consensus 185 -----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (394)
..++...+. .+.+.++..-|.| -+..|++|..||.|.+||++++++ .+.
T Consensus 131 ~~~~~s~ep~~kI~---t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~----------------------~v~ 184 (327)
T KOG0643|consen 131 SSDIDSEEPYLKIP---TPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKE----------------------LVD 184 (327)
T ss_pred hhhhcccCceEEec---CCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCce----------------------eee
Confidence 445566666 5789999999999 999999999999999999999543 355
Q ss_pred eeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCC
Q 016185 260 IASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 337 (394)
Q Consensus 260 ~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 337 (394)
....|...|..+.++ ..++++++.|.+-++||.++.+ .++++. ...|+++.+++|.. ..++.|+..
T Consensus 185 s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~---------v~Kty~-te~PvN~aaisP~~--d~VilgGGq 252 (327)
T KOG0643|consen 185 SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE---------VLKTYT-TERPVNTAAISPLL--DHVILGGGQ 252 (327)
T ss_pred chhhhccccccccccCCcceEEecccCccceeeecccee---------eEEEee-ecccccceeccccc--ceEEecCCc
Confidence 667799999999998 6799999999999999999775 455544 35689999999988 455555533
Q ss_pred CcEEEEEecCCCc------------eeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 338 GKIFVWELQSSPP------------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 338 g~i~iwd~~~~~~------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
...-+=-...... ..+.+++ +|-++|++++|+|+|+..++|++||.|++....
T Consensus 253 eA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 253 EAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 2222221111110 2344455 899999999999999999999999999998664
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=219.85 Aligned_cols=270 Identities=20% Similarity=0.340 Sum_probs=224.6
Q ss_pred eeecCCCceeeeeccc-ccccceeeee-ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC--ceeEEeeecc
Q 016185 4 TAIGCEPLVGSLTPSK-KREYRVTNKL-QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYV 78 (394)
Q Consensus 4 ~a~g~~~~~~~~~~~~-~~~~~~~~~~-~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~--~~~~~~~~~~ 78 (394)
.|.+..+..+++.... ...+.....+ .+|+..|+++||+| .|++||+++-|. +.||.-..+ +.+..+.
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp----~g~~La~aSFD~t~~Iw~k~~~efecv~~lE--- 102 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP----HGRYLASASFDATVVIWKKEDGEFECVATLE--- 102 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC----CCcEEEEeeccceEEEeecCCCceeEEeeee---
Confidence 5667777777777666 5567777777 58999999999999 799999999999 999986544 3556666
Q ss_pred cCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC---eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEee
Q 016185 79 DEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISS 155 (394)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~ 155 (394)
+|+..|.+++|+ ++|. +||+++.|..|-||.+..+ ++...++.|...|..+.|+| ...+|++++.
T Consensus 103 --GHEnEVK~Vaws--~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SY------ 170 (312)
T KOG0645|consen 103 --GHENEVKCVAWS--ASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSY------ 170 (312)
T ss_pred --ccccceeEEEEc--CCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEecc------
Confidence 899999999999 8899 9999999999999998744 57888999999999999999 8899999999
Q ss_pred ccceeeeeeeccceeeeccCCcEEEEEecCC---cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEcccc
Q 016185 156 LSLICLLLFIRSNCLRVGQDESVRLWNVQTG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 232 (394)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 232 (394)
|.+|++|+-..+ ++.+++. +|...|.+++|+| .|..|++++.|++++||-....
T Consensus 171 -------------------DnTIk~~~~~~dddW~c~~tl~---g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 171 -------------------DNTIKVYRDEDDDDWECVQTLD---GHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred -------------------CCeEEEEeecCCCCeeEEEEec---CccceEEEEEecC-CCceEEEecCCcceEeeeeccC
Confidence 999999987632 4677777 8999999999999 8999999999999999997651
Q ss_pred ceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcce-eccccc
Q 016185 233 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTAD-ILQKYP 311 (394)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~ 311 (394)
....|...+..+.|....|++++.|+.|++|.-...-. .+... ......
T Consensus 228 ---------------------------~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d---~p~~~l~~~~~~ 277 (312)
T KOG0645|consen 228 ---------------------------LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPD---EPSWNLLAKKEG 277 (312)
T ss_pred ---------------------------cchhcccceEeeeecccceEeccCCCEEEEEEecCCCC---CchHHHHHhhhc
Confidence 11247788999999888999999999999998764311 11112 233456
Q ss_pred CCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEec
Q 016185 312 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (394)
.|+..|+++.|.|... +.|++|+.||.|++|.+.
T Consensus 278 aHe~dVNsV~w~p~~~-~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 278 AHEVDVNSVQWNPKVS-NRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccccccceEEEcCCCC-CceeecCCCceEEEEEec
Confidence 7888999999999644 689999999999999874
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.6e-35 Score=224.54 Aligned_cols=247 Identities=19% Similarity=0.309 Sum_probs=210.5
Q ss_pred CCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECC-CCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccc
Q 016185 80 EDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSL 158 (394)
Q Consensus 80 ~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~ 158 (394)
++|++.|+.+.|. |+|. ++++|+.|..|.+|++. ..+....+++|.+.|..+.|.+ +++.+++++.
T Consensus 44 ~gh~geI~~~~F~--P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gt--------- 110 (338)
T KOG0265|consen 44 PGHKGEIYTIKFH--PDGS-CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGT--------- 110 (338)
T ss_pred CCCcceEEEEEEC--CCCC-eEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecC---------
Confidence 4899999999988 8999 99999999999999954 4466778889999999999999 8899999999
Q ss_pred eeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecc
Q 016185 159 ICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 238 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 238 (394)
|.+++.||+++|+.++.++ +|..-++++.-...+..++.+++.|+++++||+++
T Consensus 111 ----------------Dk~v~~wD~~tG~~~rk~k---~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~------- 164 (338)
T KOG0265|consen 111 ----------------DKTVRGWDAETGKRIRKHK---GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK------- 164 (338)
T ss_pred ----------------CceEEEEecccceeeehhc---cccceeeecCccccCCeEEEecCCCceEEEEeecc-------
Confidence 9999999999999999999 89999999985543457788999999999999998
Q ss_pred ccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCC
Q 016185 239 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 316 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
..++.+++ .+.+++++.|. ++.+.+|+-|+.|++||++..+ .+..+.+|..+
T Consensus 165 ----------------k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d---------~~~~lsGh~Dt 218 (338)
T KOG0265|consen 165 ----------------KEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND---------GLYTLSGHADT 218 (338)
T ss_pred ----------------cchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc---------ceEEeecccCc
Confidence 33333332 35678899997 8899999999999999999776 68889999999
Q ss_pred eEEEEEeecCCcceEEEEeCCCcEEEEEecCCCc--eeeEEeccCCcc--CCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 317 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSK--SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 317 i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
|+.+..++++ .++.+-+.|.++++||++...+ +++..+....|. -....++|+|+++.+..|+.|..+++||..
T Consensus 219 It~lsls~~g--s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 219 ITGLSLSRYG--SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT 296 (338)
T ss_pred eeeEEeccCC--CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc
Confidence 9999999999 6899999999999999987533 345555522333 334567999999999999999999999975
Q ss_pred C
Q 016185 393 P 393 (394)
Q Consensus 393 ~ 393 (394)
.
T Consensus 297 ~ 297 (338)
T KOG0265|consen 297 S 297 (338)
T ss_pred c
Confidence 3
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-35 Score=247.85 Aligned_cols=245 Identities=18% Similarity=0.279 Sum_probs=226.0
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
.+...|-++.+. |... +++++-.+|.|.|||.++...++++.-..-+|.+..|-+ ..+.+++|++
T Consensus 11 ~rSdRVKsVd~H--PteP-w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsD----------- 75 (794)
T KOG0276|consen 11 SRSDRVKSVDFH--PTEP-WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSD----------- 75 (794)
T ss_pred ccCCceeeeecC--CCCc-eEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecC-----------
Confidence 366778888887 8887 999999999999999999999999998889999999998 7789999999
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
|..|+||+.++++.+..|. +|.+.|++++.+| ...++++++.|-.|++||.....
T Consensus 76 --------------D~~IrVfnynt~ekV~~Fe---AH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~w------- 130 (794)
T KOG0276|consen 76 --------------DMQIRVFNYNTGEKVKTFE---AHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEW------- 130 (794)
T ss_pred --------------CceEEEEecccceeeEEee---ccccceeeeeecC-CCCeEEecCCccEEEEeeccCce-------
Confidence 9999999999999999999 8999999999999 88889999999999999999842
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCe
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI 317 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i 317 (394)
.....+++|...|++++|. .+.+++++-|++|++|.+.+.. +..++.+|...|
T Consensus 131 ---------------a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---------~nfTl~gHekGV 186 (794)
T KOG0276|consen 131 ---------------ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---------PNFTLEGHEKGV 186 (794)
T ss_pred ---------------eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC---------CceeeeccccCc
Confidence 3567899999999999998 6699999999999999998776 678889999999
Q ss_pred EEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 318 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+++.|-+.+..++|++|+.|..|+|||.++. .++.+++ +|...|..+.|+|.-..+++||+||+++||+-.+
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk--~CV~TLe--GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVWDYQTK--SCVQTLE--GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEeecchH--HHHHHhh--cccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 9999999887789999999999999999998 4788888 9999999999999999999999999999998654
No 52
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-34 Score=245.95 Aligned_cols=275 Identities=24% Similarity=0.391 Sum_probs=235.8
Q ss_pred eEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECC
Q 016185 37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS 116 (394)
Q Consensus 37 ~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 116 (394)
+=+.|+. .+.+|.|....|++|+..+++...... .+++.|+++.|+ ++|. +|++|..+|.|.|||..
T Consensus 181 nlldWss-----~n~laValg~~vylW~~~s~~v~~l~~-----~~~~~vtSv~ws--~~G~-~LavG~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 181 NLLDWSS-----ANVLAVALGQSVYLWSASSGSVTELCS-----FGEELVTSVKWS--PDGS-HLAVGTSDGTVQIWDVK 247 (484)
T ss_pred hHhhccc-----CCeEEEEecceEEEEecCCCceEEeEe-----cCCCceEEEEEC--CCCC-EEEEeecCCeEEEEehh
Confidence 3367775 678999988889999988888555544 237899999999 9999 99999999999999999
Q ss_pred CCeeEEEEEe-cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEE-eec
Q 016185 117 NEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILI-FAG 194 (394)
Q Consensus 117 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~-~~~ 194 (394)
+.+.++.+.+ |...|.+++|+. ..+.+|+. |+.|..+|++..+.... +.
T Consensus 248 ~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr-------------------------~~~I~~~dvR~~~~~~~~~~- 298 (484)
T KOG0305|consen 248 EQKKTRTLRGSHASRVGSLAWNS---SVLSSGSR-------------------------DGKILNHDVRISQHVVSTLQ- 298 (484)
T ss_pred hccccccccCCcCceeEEEeccC---ceEEEecC-------------------------CCcEEEEEEecchhhhhhhh-
Confidence 9999999998 999999999984 78999999 99999999998876555 44
Q ss_pred cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe
Q 016185 195 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 274 (394)
Q Consensus 195 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 274 (394)
+|...|..+.|++ ++.+|++|+.|+.+.|||... ..+...+..|...|.+++|+
T Consensus 299 --~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~-----------------------~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 299 --GHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS-----------------------PEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred --cccceeeeeEECC-CCCeeccCCCccceEeccCCC-----------------------ccccEEEeccceeeeEeeeC
Confidence 8999999999999 999999999999999999976 56788999999999999998
Q ss_pred ---CcEEEEeec--CCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCC
Q 016185 275 ---GDFILSKSV--DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 349 (394)
Q Consensus 275 ---~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (394)
..+||+|+. |+.|++||..++. .+... .....|..+.|++..+.....-|..++.|.||++.+.
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~~g~---------~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~- 421 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTNTGA---------RIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM- 421 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcCCCc---------Eeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-
Confidence 778998864 9999999999886 33332 2346899999999986323333567889999999885
Q ss_pred ceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 350 PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 350 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
..+..+. +|...|..++++|||..+++|+.|.++++|++-+
T Consensus 422 -~~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 422 -KLVAELL--GHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred -ceeeeec--CCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 4667777 9999999999999999999999999999999754
No 53
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=8.9e-34 Score=250.64 Aligned_cols=274 Identities=22% Similarity=0.347 Sum_probs=238.9
Q ss_pred CccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEE-eeecccCCcccceEEEEEEEcCCCCcEEEEeecCCe
Q 016185 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAA-LQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (394)
Q Consensus 32 h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 109 (394)
|...+.+..|.+ .++++++.+. |++|+..++..+.. +. +|.+.|.++++. ..+. .|++|+.|.+
T Consensus 207 ~~~~~~~~q~~~------~~~~~~s~~~tl~~~~~~~~~~i~~~l~-----GH~g~V~~l~~~--~~~~-~lvsgS~D~t 272 (537)
T KOG0274|consen 207 DDHVVLCLQLHD------GFFKSGSDDSTLHLWDLNNGYLILTRLV-----GHFGGVWGLAFP--SGGD-KLVSGSTDKT 272 (537)
T ss_pred Ccchhhhheeec------CeEEecCCCceeEEeecccceEEEeecc-----CCCCCceeEEEe--cCCC-EEEEEecCCc
Confidence 566788899884 5788888888 99999999988777 66 799999999986 4344 9999999999
Q ss_pred EEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEE
Q 016185 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICI 189 (394)
Q Consensus 110 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~ 189 (394)
+++||..++++...+.+|.+.|.++...+ ..+++|+. |.+|++|+++++..+
T Consensus 273 ~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~-------------------------D~tVkVW~v~n~~~l 324 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSR-------------------------DNTVKVWDVTNGACL 324 (537)
T ss_pred EEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccC-------------------------CceEEEEeccCcceE
Confidence 99999999999999999999999998865 78889999 999999999999999
Q ss_pred EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceE
Q 016185 190 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 269 (394)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 269 (394)
..+. +|..+|.++..+ +.++++|+.|++|++||+.+ ...+..+.+|...|.
T Consensus 325 ~l~~---~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~-----------------------~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 325 NLLR---GHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRT-----------------------GKCLKSLSGHTGRVY 375 (537)
T ss_pred EEec---cccccEEEEEec---CCEEEEEecCceEEEEEhhh-----------------------ceeeeeecCCcceEE
Confidence 9998 799999999985 57899999999999999998 557899999999999
Q ss_pred EEEEeC-cEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 270 CNRWLG-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 270 ~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
++.+++ +.+++|+.|+.|++||+++.. +++..+..|..-+..+.+.. ++|++++.|+.|++||..++
T Consensus 376 sl~~~~~~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v~~l~~~~----~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 376 SLIVDSENRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLVSSLLLRD----NFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEecCcceEEeeeeccceEeecCCchh--------hhhhhhcCCccccccccccc----ceeEeccccccEEEeecccC
Confidence 999998 999999999999999999882 27888888888775555443 57999999999999999998
Q ss_pred CceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 349 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+ .+..+... |.+.|..+++. ...+++++.||.+++||+++
T Consensus 444 ~--~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 444 E--CLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred c--eeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 5 56666621 66889888886 46788899999999999975
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=214.30 Aligned_cols=287 Identities=16% Similarity=0.183 Sum_probs=246.0
Q ss_pred eeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee
Q 016185 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (394)
Q Consensus 27 ~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 105 (394)
+.+++|...|.+|+|+. +|..||+++.|+ +.+|++...+....+. ..+|.+.|-.++|. |....++++++
T Consensus 14 r~~~~~~~~v~Sv~wn~----~g~~lasgs~dktv~v~n~e~~r~~~~~~---~~gh~~svdql~w~--~~~~d~~atas 84 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC----DGTKLASGSFDKTVSVWNLERDRFRKELV---YRGHTDSVDQLCWD--PKHPDLFATAS 84 (313)
T ss_pred HHhhhhhhcceEEEEcc----cCceeeecccCCceEEEEecchhhhhhhc---ccCCCcchhhheeC--CCCCcceEEec
Confidence 56789999999999998 899999999999 9999998875444433 34788899999998 55555899999
Q ss_pred cCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC
Q 016185 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT 185 (394)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~ 185 (394)
.|.+|++||+..+++...+....+.| -+.|+| ++.+++.+++ |..|...|.++
T Consensus 85 ~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp-~g~~~~~~~k-------------------------dD~it~id~r~ 137 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKCTARIETKGENI-NITWSP-DGEYIAVGNK-------------------------DDRITFIDART 137 (313)
T ss_pred CCceEEEEEeccCcEEEEeeccCcce-EEEEcC-CCCEEEEecC-------------------------cccEEEEEecc
Confidence 99999999999999999888655554 478999 7788999998 99999999999
Q ss_pred CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 186 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 186 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
.+.....+ ....+..++|+. ++++|+.....|.|.|..... -+|+..++.|+
T Consensus 138 ~~~~~~~~----~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsyps-----------------------Lkpv~si~AH~ 189 (313)
T KOG1407|consen 138 YKIVNEEQ----FKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPS-----------------------LKPVQSIKAHP 189 (313)
T ss_pred cceeehhc----ccceeeeeeecC-CCCEEEEecCCceEEEEeccc-----------------------cccccccccCC
Confidence 88877765 677888999996 778777777789999999988 55899999999
Q ss_pred CceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEE
Q 016185 266 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 343 (394)
Q Consensus 266 ~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iw 343 (394)
....||.|+ |+++++|+.|-.+.+||++..- +++.+.-+.-+|..+.|+.++ ++||+|++|..|-|=
T Consensus 190 snCicI~f~p~GryfA~GsADAlvSLWD~~ELi---------C~R~isRldwpVRTlSFS~dg--~~lASaSEDh~IDIA 258 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGSADALVSLWDVDELI---------CERCISRLDWPVRTLSFSHDG--RMLASASEDHFIDIA 258 (313)
T ss_pred cceEEEEECCCCceEeeccccceeeccChhHhh---------hheeeccccCceEEEEeccCc--ceeeccCccceEEeE
Confidence 999999998 9999999999999999998665 677788888899999999999 699999999999999
Q ss_pred EecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccC---------CeEEEEEcCC
Q 016185 344 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED---------GAIWRWDAIP 393 (394)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~ 393 (394)
++.++. .+.+++ +.++-..++|+|...+||-++.| |.+++|-+.+
T Consensus 259 ~vetGd--~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 259 EVETGD--RVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred ecccCC--eEEEee---ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 999995 455654 44788999999999999977644 6788887654
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-34 Score=217.35 Aligned_cols=245 Identities=20% Similarity=0.371 Sum_probs=211.2
Q ss_pred CccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCC-CceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCe
Q 016185 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (394)
Q Consensus 32 h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 109 (394)
-.+.+..++|++. ..+.+++++.|+ ++|||... ..++..++ .|+.+|+++.|. +-.++.+++++.|++
T Consensus 59 ~~D~LfdV~Wse~---~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k-----EH~~EV~Svdwn--~~~r~~~ltsSWD~T 128 (311)
T KOG0277|consen 59 TEDGLFDVAWSEN---HENQVIAASGDGSLRLFDLTMPSKPIHKFK-----EHKREVYSVDWN--TVRRRIFLTSSWDGT 128 (311)
T ss_pred cccceeEeeecCC---CcceEEEEecCceEEEeccCCCCcchhHHH-----hhhhheEEeccc--cccceeEEeeccCCc
Confidence 3678999999983 467777777777 99999543 23455555 799999999998 544448888899999
Q ss_pred EEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEE
Q 016185 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICI 189 (394)
Q Consensus 110 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~ 189 (394)
|++|+...++.++++.+|...|....|+|..++++++++. |+.+++||++.....
T Consensus 129 iKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg-------------------------d~~l~lwdvr~~gk~ 183 (311)
T KOG0277|consen 129 IKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG-------------------------DGTLRLWDVRSPGKF 183 (311)
T ss_pred eEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC-------------------------CceEEEEEecCCCce
Confidence 9999999999999999999999999999999999999999 999999999875544
Q ss_pred EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceE
Q 016185 190 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 269 (394)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 269 (394)
..+. .|..+|.+..|+.-+.+.++||+.|+.|+.||+++. ..|+..+.+|.-.|+
T Consensus 184 ~~i~---ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~----------------------r~pl~eL~gh~~AVR 238 (311)
T KOG0277|consen 184 MSIE---AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL----------------------RTPLFELNGHGLAVR 238 (311)
T ss_pred eEEE---eccceeEeecccccCCcEEEecCCCceEEEEehhhc----------------------cccceeecCCceEEE
Confidence 4576 799999999999878899999999999999999994 357888999999999
Q ss_pred EEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 270 CNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 270 ~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
.+.|+ ...|++++.|-++++||...+.. .+.+..-|..-+..+.|++-.. .++|+.+.|..++||+.
T Consensus 239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds--------~~e~~~~HtEFv~g~Dws~~~~-~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 239 KVKFSPHHASLLASASYDMTVRIWDPERQDS--------AIETVDHHTEFVCGLDWSLFDP-GQVASTGWDELLYVWNP 308 (311)
T ss_pred EEecCcchhhHhhhccccceEEecccccchh--------hhhhhhccceEEeccccccccC-ceeeecccccceeeecc
Confidence 99998 56999999999999999986653 5666777877888999999854 69999999999999984
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=253.59 Aligned_cols=303 Identities=17% Similarity=0.261 Sum_probs=214.6
Q ss_pred eeeec-cCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccC-----CcccceEEEEEEE-cCCC
Q 016185 26 TNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE-----DKEESFYTVSWAC-NVDG 97 (394)
Q Consensus 26 ~~~~~-~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~~ 97 (394)
.+.+. +|.++|.++.||+ ||+|||+||.|+ |+||.+...+....-...... .....+..+.... ...+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~----DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSH----DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeccccccCCcEEEEEeCC----CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 34445 8999999999999 899999999999 999998774431111100000 0000000000000 0011
Q ss_pred C-cEEEEeecCCeEEEEECC----CCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeee
Q 016185 98 I-PFLVAGGINGIIRVIDVS----NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRV 172 (394)
Q Consensus 98 ~-~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~ 172 (394)
+ ...-.+.....+ +.+.. ..++++.+.+|.+.|.++.|+. .++|++++.
T Consensus 335 ~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSM----------------------- 388 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSM----------------------- 388 (712)
T ss_pred cccccccccCCccc-cCCCccccccccchhhhhccchhheeccccc--CCeeEeccc-----------------------
Confidence 1 011222222332 22222 2467889999999999999996 579999999
Q ss_pred ccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcc
Q 016185 173 GQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 252 (394)
Q Consensus 173 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (394)
|.+|++|++...+++..|. |.+.|+|++|+|.|.++|++|+.||+||||++...+
T Consensus 389 --DKTVRLWh~~~~~CL~~F~----HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~------------------- 443 (712)
T KOG0283|consen 389 --DKTVRLWHPGRKECLKVFS----HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK------------------- 443 (712)
T ss_pred --cccEEeecCCCcceeeEEe----cCCeeEEEEecccCCCcEeecccccceEEeecCcCe-------------------
Confidence 9999999999999999997 999999999999999999999999999999999832
Q ss_pred ccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcce
Q 016185 253 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 330 (394)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 330 (394)
+.....-...|++++|. |++.+.|+.+|..++|+....+..... ....-.........|+.+.|.|... ..
T Consensus 444 -----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~-~I~~~~~Kk~~~~rITG~Q~~p~~~-~~ 516 (712)
T KOG0283|consen 444 -----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF-HIRLHNKKKKQGKRITGLQFFPGDP-DE 516 (712)
T ss_pred -----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee-eEeeccCccccCceeeeeEecCCCC-Ce
Confidence 33444445789999997 999999999999999999876531111 0001111112223799999999875 46
Q ss_pred EEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 331 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 331 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
+++.+.|..|||||.++.. ++..++.......-....|+.||++|+++++|..|+||++.
T Consensus 517 vLVTSnDSrIRI~d~~~~~--lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 517 VLVTSNDSRIRIYDGRDKD--LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred EEEecCCCceEEEeccchh--hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 8888889999999997763 56666621122334457899999999999999999999974
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=250.27 Aligned_cols=266 Identities=24% Similarity=0.397 Sum_probs=220.9
Q ss_pred eecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEc-CCCceeEEeeecccCCc
Q 016185 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQC-LEGGVIAALQSYVDEDK 82 (394)
Q Consensus 5 a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~-~~~~~~~~~~~~~~~~~ 82 (394)
+.++.+..+.+.........+.+.+.+|...|++++|+| ++.++++++.|. |+|||+ ..+..++.+. +|
T Consensus 175 ~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~----d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-----gH 245 (456)
T KOG0266|consen 175 AAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP----DGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-----GH 245 (456)
T ss_pred EEccCCCcEEEeecccccchhhccccccccceeeeEECC----CCcEEEEecCCceEEEeeccCCCeEEEEec-----CC
Confidence 344444444444331111136667789999999999999 789999999999 999999 4557778888 78
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeee
Q 016185 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLL 162 (394)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~ 162 (394)
...|++++|+ |+|+ ++++|+.|++|+|||++++++...+.+|.+.|++++|++ ++++|++++.
T Consensus 246 ~~~v~~~~f~--p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~------------- 308 (456)
T KOG0266|consen 246 STYVTSVAFS--PDGN-LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASY------------- 308 (456)
T ss_pred CCceEEEEec--CCCC-EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCC-------------
Confidence 9999999988 9996 999999999999999999999999999999999999999 8899999999
Q ss_pred eeeccceeeeccCCcEEEEEecCCc--EEEEeeccCCCcc--cEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecc
Q 016185 163 LFIRSNCLRVGQDESVRLWNVQTGI--CILIFAGAGGHRN--EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 238 (394)
Q Consensus 163 ~~~~~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 238 (394)
|+.|++||+.++. +...+. ++.. ++++++|+| ++.++++++.|+.+++||++.+
T Consensus 309 ------------d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~------ 366 (456)
T KOG0266|consen 309 ------------DGTIRVWDLETGSKLCLKLLS---GAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSG------ 366 (456)
T ss_pred ------------CccEEEEECCCCceeeeeccc---CCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCC------
Confidence 9999999999998 456665 3443 599999999 9999999999999999999983
Q ss_pred ccccCCCCCCCCccccccceeeeecCCCceEEE---EEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCC
Q 016185 239 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN---RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 313 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
.......+|...+.++ ... +.++++++.|+.|.+||+.++. .+..+.+|
T Consensus 367 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~---------~~~~l~~h 420 (456)
T KOG0266|consen 367 -----------------KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG---------ILQRLEGH 420 (456)
T ss_pred -----------------cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc---------hhhhhcCC
Confidence 3455666666654333 212 8899999999999999999866 67788888
Q ss_pred -CCCeEEEEEeecCCcceEEEEe--CCCcEEEEEec
Q 016185 314 -ECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQ 346 (394)
Q Consensus 314 -~~~i~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 346 (394)
...+..+.++|.. .++++++ .|+.+++|...
T Consensus 421 ~~~~~~~~~~~~~~--~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 421 SKAAVSDLSSHPTE--NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCceeccccCCCc--CeeeecCcCCCceEEEecCC
Confidence 8889999999999 6888887 78999999754
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-33 Score=247.13 Aligned_cols=306 Identities=22% Similarity=0.322 Sum_probs=237.8
Q ss_pred eeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEE
Q 016185 13 GSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSW 91 (394)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 91 (394)
+.+..|..+=-.+...|.+|.++|..++|+| .+.++++|++|. |+||+..+.+++.++. +|-+-|..+.|
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~----~qplFVSGGDDykIkVWnYk~rrclftL~-----GHlDYVRt~~F 101 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP----TQPLFVSGGDDYKIKVWNYKTRRCLFTLL-----GHLDYVRTVFF 101 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecC----CCCeEEecCCccEEEEEecccceehhhhc-----cccceeEEeec
Confidence 3344555555567788899999999999999 789999999998 9999999999988888 67788888887
Q ss_pred EEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceee
Q 016185 92 ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLR 171 (394)
Q Consensus 92 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~ 171 (394)
. +.-. ++++++.|.+|+||++++++++..+.||...|.|..|+| ...+++|+|-
T Consensus 102 H--heyP-WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSL---------------------- 155 (1202)
T KOG0292|consen 102 H--HEYP-WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASL---------------------- 155 (1202)
T ss_pred c--CCCc-eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecc----------------------
Confidence 6 7777 999999999999999999999999999999999999999 7799999999
Q ss_pred eccCCcEEEEEecC--------C--------c-----EE----E-EeeccCCCcccEEEEEecCCCCeeEEeeccCCcEE
Q 016185 172 VGQDESVRLWNVQT--------G--------I-----CI----L-IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK 225 (394)
Q Consensus 172 ~~~d~~i~vwd~~~--------~--------~-----~~----~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~ 225 (394)
|.+|+|||+.. + . .. . .-..+++|...|+-++|+| .-.+|++|+.|..|+
T Consensus 156 ---DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 156 ---DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVK 231 (1202)
T ss_pred ---cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceee
Confidence 99999999851 1 0 00 0 0001348999999999999 889999999999999
Q ss_pred EEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeC--cEEEEeecCCeEEEecCCCCCCCCCCCc
Q 016185 226 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGT 303 (394)
Q Consensus 226 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 303 (394)
+|.+...+ .-.+.+..+|.+.|.++-|++ +++++.+.|+.|++||+....
T Consensus 232 lWrmnetK---------------------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt------- 283 (1202)
T KOG0292|consen 232 LWRMNETK---------------------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT------- 283 (1202)
T ss_pred EEEecccc---------------------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc-------
Confidence 99998733 234667889999999999995 899999999999999999776
Q ss_pred ceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEec---------------------------CCCceeeEEe
Q 016185 304 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ---------------------------SSPPVLIARL 356 (394)
Q Consensus 304 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------------------------~~~~~~~~~~ 356 (394)
.++.++-....-+.++-+|.. +++++|- |+-+.+|.+. +.+...+..+
T Consensus 284 --~v~tfrrendRFW~laahP~l--NLfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~l 358 (1202)
T KOG0292|consen 284 --SVQTFRRENDRFWILAAHPEL--NLFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASL 358 (1202)
T ss_pred --ceeeeeccCCeEEEEEecCCc--ceeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEec
Confidence 567777677788888888887 4555443 4445555554 3222233333
Q ss_pred ccC-CccCCeeEEEeccCCCEE-EEeccC-CeEEEEE
Q 016185 357 SHA-QSKSPIRQTAMSYDGSTI-LSCCED-GAIWRWD 390 (394)
Q Consensus 357 ~~~-~~~~~v~~~~~s~~~~~l-~s~~~d-g~i~iwd 390 (394)
.+. ....++.++.++|....+ ++.+.| |.--++.
T Consensus 359 r~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ 395 (1202)
T KOG0292|consen 359 RRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQ 395 (1202)
T ss_pred cCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEE
Confidence 311 123678889999975544 443333 3333443
No 59
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-34 Score=223.07 Aligned_cols=299 Identities=17% Similarity=0.284 Sum_probs=253.5
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCc
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (394)
-.+.+.+.|.||.+.|+.++... ...++.+++.|. -+||.+++|.++..+. +|.+.|+++.|. +.+.
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~----tqpi~gtASADhTA~iWs~Esg~CL~~Y~-----GH~GSVNsikfh--~s~~- 203 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADS----TQPICGTASADHTARIWSLESGACLATYT-----GHTGSVNSIKFH--NSGL- 203 (481)
T ss_pred eeEeehhhhcccccceeeehhhc----CCcceeecccccceeEEeeccccceeeec-----ccccceeeEEec--cccc-
Confidence 45677888899999999999875 466999999998 9999999999999988 799999999998 7787
Q ss_pred EEEEeecCCeEEEEEC------CCC----------------------------------eeEEEEEecCCceeEEEEcCC
Q 016185 100 FLVAGGINGIIRVIDV------SNE----------------------------------KLHKSFVGHGDSINEIRTQPL 139 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~------~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~ 139 (394)
++++++.|++-.||.. ... .++..+.+|...|.+..|..
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~- 282 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA- 282 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-
Confidence 9999999999999972 110 13456778999999999988
Q ss_pred CCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeec
Q 016185 140 KPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 219 (394)
Q Consensus 140 ~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~ 219 (394)
++..+++++. |.+..+||+++|+.+..+. +|....+.++-+| ..+++++.+
T Consensus 283 gg~Q~vTaSW-------------------------DRTAnlwDVEtge~v~~Lt---GHd~ELtHcstHp-tQrLVvTsS 333 (481)
T KOG0300|consen 283 GGQQMVTASW-------------------------DRTANLWDVETGEVVNILT---GHDSELTHCSTHP-TQRLVVTSS 333 (481)
T ss_pred Ccceeeeeec-------------------------cccceeeeeccCceecccc---CcchhccccccCC-cceEEEEec
Confidence 8889999999 9999999999999999998 8999999999999 999999999
Q ss_pred cCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCC
Q 016185 220 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQS 298 (394)
Q Consensus 220 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~ 298 (394)
.|.+.++||++.. ...+..+++|.+.|+++.|. ++.+++|+.|.+|++||+++...
T Consensus 334 rDtTFRLWDFRea----------------------I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs- 390 (481)
T KOG0300|consen 334 RDTTFRLWDFREA----------------------IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS- 390 (481)
T ss_pred cCceeEeccchhh----------------------cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC-
Confidence 9999999999962 23577899999999999998 99999999999999999998764
Q ss_pred CCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCC--CE
Q 016185 299 PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG--ST 376 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~ 376 (394)
++..++. .++++.++.+..+ .+++.--.+..|++||+.......+.+-...+|...|++++|..+. .-
T Consensus 391 -------plATIRt-dS~~NRvavs~g~--~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cn 460 (481)
T KOG0300|consen 391 -------PLATIRT-DSPANRVAVSKGH--PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACN 460 (481)
T ss_pred -------cceeeec-CCccceeEeecCC--ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccc
Confidence 3444433 4578899999888 6888888899999999987642222222255899999999999653 46
Q ss_pred EEEeccCCeEEEEEcCCC
Q 016185 377 ILSCCEDGAIWRWDAIPT 394 (394)
Q Consensus 377 l~s~~~dg~i~iwd~~~~ 394 (394)
|.+++-|..+.=|++..+
T Consensus 461 LftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 461 LFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccccceeeeeEeccc
Confidence 889999999999998753
No 60
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=238.39 Aligned_cols=285 Identities=22% Similarity=0.334 Sum_probs=236.6
Q ss_pred ceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc--eeEEeeecccCCcccceEEEEEEEcCCCCcE
Q 016185 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 24 ~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (394)
.....+..|.+.|..+.|-+ +...|++|+.|. |++|+...++ .+.++. +..++|..+.+. ++++ +
T Consensus 166 ~~~~~ld~h~gev~~v~~l~----~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-----Gs~g~it~~d~d--~~~~-~ 233 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLR----NSDTLATGGSDRIIKLWNVLGEKSELISTLA-----GSLGNITSIDFD--SDNK-H 233 (459)
T ss_pred hhhhhhhccccccceeEEcc----Ccchhhhcchhhhhhhhhcccchhhhhhhhh-----ccCCCcceeeec--CCCc-e
Confidence 34556678999999999998 568999999999 9999987665 344444 566788888877 8998 8
Q ss_pred EEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEE
Q 016185 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRL 180 (394)
Q Consensus 101 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 180 (394)
+++++.|+.+++|++.+.+...++.+|++.|+++.|.. ....+++|+. |.+|+.
T Consensus 234 ~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~-------------------------DRtiK~ 287 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSA-------------------------DRTIKL 287 (459)
T ss_pred EEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccc-------------------------cchhhh
Confidence 99999999999999999999999999999999999988 5555999999 999999
Q ss_pred EEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceee
Q 016185 181 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 260 (394)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (394)
||+....+.+++. ....+..|+.. ...+++|-.|++|++||.+. ..+...
T Consensus 288 WDl~k~~C~kt~l----~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs-----------------------~~~~~s 337 (459)
T KOG0288|consen 288 WDLQKAYCSKTVL----PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS-----------------------ADKTRS 337 (459)
T ss_pred hhhhhhheecccc----ccccccceEec---ceeeeecccccceEEEeccC-----------------------CceeeE
Confidence 9999988888775 55667777765 36789999999999999999 345666
Q ss_pred eecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC----CCCCeEEEEEeecCCcceEEEE
Q 016185 261 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCDFHYNAAAIG 334 (394)
Q Consensus 261 ~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~~~ 334 (394)
...+. .|+++..+ +..+++++.|.++.+.|+++.+ ....+.. ..+..+.+.|||++ .|+++|
T Consensus 338 v~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e---------I~~~~sA~g~k~asDwtrvvfSpd~--~YvaAG 405 (459)
T KOG0288|consen 338 VPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE---------IRQTFSAEGFKCASDWTRVVFSPDG--SYVAAG 405 (459)
T ss_pred eecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc---------EEEEeeccccccccccceeEECCCC--ceeeec
Confidence 66665 88888876 7789999999999999999876 2333322 12458899999999 699999
Q ss_pred eCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 335 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
+.||.|+||++.+++ +...+........|++++|+|.|..|++++.++.+.+|.
T Consensus 406 S~dgsv~iW~v~tgK--lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGK--LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cCCCcEEEEEccCce--EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999995 444454324444799999999999999999999999993
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=230.06 Aligned_cols=289 Identities=18% Similarity=0.237 Sum_probs=239.3
Q ss_pred eeeec-cCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccC---CcccceEEEEEEEcCCCCcE
Q 016185 26 TNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE---DKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 26 ~~~~~-~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~ 100 (394)
.+.++ +....+.|..||| ||++|++|+.|+ |.+||..+|+..+.++-.... -++.+|.|++|+ .|.. .
T Consensus 205 ~r~IKFg~KSh~EcA~FSP----DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS--RDsE-M 277 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSP----DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS--RDSE-M 277 (508)
T ss_pred hhheecccccchhheeeCC----CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec--ccHH-H
Confidence 34443 5567799999999 899999999999 999999999866555422111 356788888877 8888 9
Q ss_pred EEEeecCCeEEEEECCCCeeEEEEE-ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 101 LVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 101 l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
|++|+.||.|++|.+.+|.+++.|. .|...|+|+.|+. ++..+++++. |.+++
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sf-------------------------D~tvR 331 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASF-------------------------DQTVR 331 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-Ccchhhcccc-------------------------cceEE
Confidence 9999999999999999999999997 8999999999999 7788899999 99999
Q ss_pred EEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee
Q 016185 180 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 259 (394)
Q Consensus 180 vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (394)
+.-+.+|++++.++ +|.+.|+...|.+ +|..+++++.||+|++|+..+... +.
T Consensus 332 iHGlKSGK~LKEfr---GHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC-----------------------~~ 384 (508)
T KOG0275|consen 332 IHGLKSGKCLKEFR---GHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTEC-----------------------LS 384 (508)
T ss_pred EeccccchhHHHhc---CccccccceEEcC-CCCeEEEecCCccEEEecCcchhh-----------------------hh
Confidence 99999999999999 9999999999999 999999999999999999998432 22
Q ss_pred eee--cCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC---CCCCeEEEEEeecCCcceE
Q 016185 260 IAS--VHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAA 331 (394)
Q Consensus 260 ~~~--~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l 331 (394)
+++ +...+|.++..- +..++.+...+++.+.++... .++.+.. ..+...+.+.+|.| .++
T Consensus 385 Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ----------vVrsfsSGkREgGdFi~~~lSpkG--ewi 452 (508)
T KOG0275|consen 385 TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ----------VVRSFSSGKREGGDFINAILSPKG--EWI 452 (508)
T ss_pred hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce----------EEeeeccCCccCCceEEEEecCCC--cEE
Confidence 211 122334444443 668888899999999998765 4444443 33456778899999 699
Q ss_pred EEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 332 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 332 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
.+.++|+.++.|.+.++. +...+. -|...|..++-+|..+.||+-++||.+++|.
T Consensus 453 YcigED~vlYCF~~~sG~--LE~tl~--VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 453 YCIGEDGVLYCFSVLSGK--LERTLP--VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEccCcEEEEEEeecCc--eeeeee--cccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999984 566666 7778899999999999999999999999995
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-32 Score=212.61 Aligned_cols=289 Identities=17% Similarity=0.259 Sum_probs=230.2
Q ss_pred ccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcE
Q 016185 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 22 ~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (394)
.+++.+.++.-...|+++.|++ +|.++++++.|. ++|||..++.+++++. .++..+..++|. .... .
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~----~G~~litss~dDsl~LYd~~~g~~~~ti~-----skkyG~~~~~Ft--h~~~-~ 70 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSD----DGLLLITSSEDDSLRLYDSLSGKQVKTIN-----SKKYGVDLACFT--HHSN-T 70 (311)
T ss_pred ccccccccccCCCceeEEEecC----CCCEEEEecCCCeEEEEEcCCCceeeEee-----cccccccEEEEe--cCCc-e
Confidence 4666777777788999999998 799999988875 9999999999999998 456677778887 4444 4
Q ss_pred EEEeec--CCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcE
Q 016185 101 LVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESV 178 (394)
Q Consensus 101 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (394)
++.++. |.+|+..++.+.+.++-+.||...|++++.+| .+..+++++. |++|
T Consensus 71 ~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~-------------------------D~tv 124 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSL-------------------------DKTV 124 (311)
T ss_pred EEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEeccc-------------------------CCeE
Confidence 555544 88999999999999999999999999999999 6699999999 9999
Q ss_pred EEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccce
Q 016185 179 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 258 (394)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
++||++..++...+. ...-..++|+| .|-+++++.....|++||++.... .|.
T Consensus 125 rLWDlR~~~cqg~l~-----~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dk---------------------gPF 177 (311)
T KOG1446|consen 125 RLWDLRVKKCQGLLN-----LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDK---------------------GPF 177 (311)
T ss_pred EeeEecCCCCceEEe-----cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCC---------------------CCc
Confidence 999999888777665 22334589999 999999998888999999999431 223
Q ss_pred eeee---cCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCC---CeEEEEEeecCCcce
Q 016185 259 FIAS---VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC---DIWFIKFSCDFHYNA 330 (394)
Q Consensus 259 ~~~~---~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~ 330 (394)
..+. ........+.|+ |++++.+...+.+++.|.-.+. ....+..+.. --....|+|++ .+
T Consensus 178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---------~~~tfs~~~~~~~~~~~a~ftPds--~F 246 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---------VKSTFSGYPNAGNLPLSATFTPDS--KF 246 (311)
T ss_pred eeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---------EeeeEeeccCCCCcceeEEECCCC--cE
Confidence 3222 335567888887 9999999999999999998886 3344333322 22577899999 68
Q ss_pred EEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 331 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 331 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
+++|+.||+|.+|+++++. .+..+.. .+.+++.++.|+|...++++++ ..+-+|=.
T Consensus 247 vl~gs~dg~i~vw~~~tg~--~v~~~~~-~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p 302 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGK--KVAVLRG-PNGGPVSCVRFNPRYAMFVSAS--SNLVFWLP 302 (311)
T ss_pred EEEecCCCcEEEEEcCCCc--EeeEecC-CCCCCccccccCCceeeeeecC--ceEEEEec
Confidence 9999999999999999885 5556652 2678999999999877777765 46777743
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.2e-32 Score=201.20 Aligned_cols=302 Identities=17% Similarity=0.229 Sum_probs=235.1
Q ss_pred ccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcC------CC----ceeEEeeecccCCcccceEE
Q 016185 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL------EG----GVIAALQSYVDEDKEESFYT 88 (394)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~------~~----~~~~~~~~~~~~~~~~~v~~ 88 (394)
.+.|.....|+ -...|.+++|+| .|.+.|.|+..+ .+|.... .+ .+...+..-....|.+.|+|
T Consensus 20 k~~f~~i~~l~-dsqairav~fhp----~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 20 KKHFEAINILE-DSQAIRAVAFHP----AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred ccceEEEEEec-chhheeeEEecC----CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEE
Confidence 34566666554 467899999999 799999999887 6665432 11 11112222234579999999
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCee-----EEEEEecCCceeEEEEcCC---CCcEEEEceeeeEEeecccee
Q 016185 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-----HKSFVGHGDSINEIRTQPL---KPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 89 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~~i~~~~~~~~~ 160 (394)
.+|+ |+|+ ++++|+.|.+|++.-.+...+ -..+..|.+.|..++|..+ ++.+|++++.
T Consensus 95 ~~ws--~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga----------- 160 (350)
T KOG0641|consen 95 TAWS--PCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA----------- 160 (350)
T ss_pred EEec--CccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC-----------
Confidence 9999 9999 999999999999987654433 3456789999999999652 3467777663
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
.|..|++-|..+|+..+.+. +|++.|.++--- ++-+|++|+.|.+|++||++-...
T Consensus 161 -------------gdc~iy~tdc~~g~~~~a~s---ghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~------ 216 (350)
T KOG0641|consen 161 -------------GDCKIYITDCGRGQGFHALS---GHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSC------ 216 (350)
T ss_pred -------------CcceEEEeecCCCCcceeec---CCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccce------
Confidence 36778888888999999888 899999887543 688999999999999999998332
Q ss_pred ccCCCCCCCCccccccceeeee--c-----CCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceeccccc
Q 016185 241 TWTDLPSKFPTKYVQFPVFIAS--V-----HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 311 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 311 (394)
+..+. . ....|.+++.+ |+++++|..|....+||++.++ .++++.
T Consensus 217 -----------------v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r---------~iq~f~ 270 (350)
T KOG0641|consen 217 -----------------VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR---------MIQRFH 270 (350)
T ss_pred -----------------eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc---------eeeeeC
Confidence 22111 1 22457777776 8999999999999999999887 789999
Q ss_pred CCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 312 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
.|...|.++.|+|.. .++++++.|..|++-|++..-...+..+....|...+..+.|+|..--+++.+.|.++.+|-+
T Consensus 271 phsadir~vrfsp~a--~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 271 PHSADIRCVRFSPGA--HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred CCccceeEEEeCCCc--eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 999999999999999 699999999999999998642111222223378889999999999989999999999999987
Q ss_pred C
Q 016185 392 I 392 (394)
Q Consensus 392 ~ 392 (394)
.
T Consensus 349 ~ 349 (350)
T KOG0641|consen 349 N 349 (350)
T ss_pred C
Confidence 5
No 64
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-32 Score=218.83 Aligned_cols=294 Identities=17% Similarity=0.215 Sum_probs=227.3
Q ss_pred eeeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCC
Q 016185 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (394)
Q Consensus 3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~ 81 (394)
.+|+|.++....+......+ ....+.+|++.|+|+.||. +|.+||||+.++ |+||...++.....+. .
T Consensus 78 l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~Fsh----dgtlLATGdmsG~v~v~~~stg~~~~~~~-----~ 146 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSH----DGTLLATGDMSGKVLVFKVSTGGEQWKLD-----Q 146 (399)
T ss_pred eEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEcc----CceEEEecCCCccEEEEEcccCceEEEee-----c
Confidence 46788888888888766666 5667899999999999998 899999999999 9999999988766665 3
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEcee--eeEEeec---
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--VIIISSL--- 156 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--~i~~~~~--- 156 (394)
..+.+.=+.|. |.+. +|++|+.||.+-+|.+.++...+.+.+|..++++=.|.| +++.++++.. .|++|+.
T Consensus 147 e~~dieWl~WH--p~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 147 EVEDIEWLKWH--PRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred ccCceEEEEec--cccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCC
Confidence 44566667787 8888 999999999999999999888999999999999999999 6899999887 5555554
Q ss_pred cceeeee-------------eeccceeeeccCCcEEEEEecCCcEEEEeec-----cCCCcccEEEEEecCC--CCeeEE
Q 016185 157 SLICLLL-------------FIRSNCLRVGQDESVRLWNVQTGICILIFAG-----AGGHRNEVLSVDFHPS--DIYRIA 216 (394)
Q Consensus 157 ~~~~~~~-------------~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~--~~~~l~ 216 (394)
.....+. .....++.|..++.+++-+..+|+.+..... ...+...+.++.+.|. .-.+.+
T Consensus 223 ~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A 302 (399)
T KOG0296|consen 223 QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAA 302 (399)
T ss_pred ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhh
Confidence 1111111 1122344445555555555555554444331 0123334444444441 345678
Q ss_pred eeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeC-cEEEEeecCCeEEEecCCCC
Q 016185 217 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSVDNEIVLWEPKMK 295 (394)
Q Consensus 217 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~i~~~d~~~~ 295 (394)
+|+.||+|.|||+... .++..-.|+..|..+.|.+ .+|++++.+|.|+.||.+++
T Consensus 303 ~G~vdG~i~iyD~a~~------------------------~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 303 CGSVDGTIAIYDLAAS------------------------TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cccccceEEEEecccc------------------------hhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc
Confidence 8889999999998872 2455566899999999995 89999999999999999999
Q ss_pred CCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEec
Q 016185 296 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (394)
+ ++..+.+|...|.+++++|+. +++++++.|++.+||++.
T Consensus 359 ~---------l~~~y~GH~~~Il~f~ls~~~--~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 Q---------LKFTYTGHQMGILDFALSPQK--RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred c---------eEEEEecCchheeEEEEcCCC--cEEEEecCCCeEEEEecC
Confidence 8 789999999999999999999 799999999999999864
No 65
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5e-33 Score=226.92 Aligned_cols=297 Identities=19% Similarity=0.273 Sum_probs=236.0
Q ss_pred eeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeE-Eeee------c-----cc-CCcccceEEEEEE
Q 016185 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA-ALQS------Y-----VD-EDKEESFYTVSWA 92 (394)
Q Consensus 27 ~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~-~~~~------~-----~~-~~~~~~v~~~~~~ 92 (394)
..+..|..+|.||+++| +..+..+++.++ |.=|++.++.... .++. + .. ..|...+.+++.+
T Consensus 136 ~~~~~H~~s~~~vals~----d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP----DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred eeeccccCcceEEEeec----cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 45678999999999999 678999999998 9999998887441 1111 1 11 2567788888887
Q ss_pred EcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeee
Q 016185 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRV 172 (394)
Q Consensus 93 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~ 172 (394)
+||+ +|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-. +...+++++.
T Consensus 212 --~Dgk-ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~----------------------- 264 (479)
T KOG0299|consen 212 --SDGK-YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASA----------------------- 264 (479)
T ss_pred --CCCc-EEEecCCCceEEEecCcccchhhcccccccceeeeeeec-Cccceeeeec-----------------------
Confidence 9999 999999999999999999999999999999999999988 7788999999
Q ss_pred ccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcc
Q 016185 173 GQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 252 (394)
Q Consensus 173 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (394)
|++|++|+++....+.++. +|++.|.+|.... ..+.+-+|+.|+++++|++...
T Consensus 265 --Drsvkvw~~~~~s~vetly---GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ee-------------------- 318 (479)
T KOG0299|consen 265 --DRSVKVWSIDQLSYVETLY---GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEE-------------------- 318 (479)
T ss_pred --CCceEEEehhHhHHHHHHh---CCccceeeechhc-ccceEEeccccceeEEEecccc--------------------
Confidence 9999999999888888887 8999999999887 7777777889999999999652
Q ss_pred ccccceeeeecCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccc---cCCCCCeEEEEEeecCCc
Q 016185 253 YVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFIKFSCDFHY 328 (394)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 328 (394)
....+.+|.+.+.|++|- ...+++|+.+|.|.+|++.+.+..........+... -.+...|++++..|..
T Consensus 319 ----sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-- 392 (479)
T KOG0299|consen 319 ----SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-- 392 (479)
T ss_pred ----ceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC--
Confidence 244567788899999997 889999999999999999987642211111111111 1122489999999998
Q ss_pred ceEEEEeCCCcEEEEEecCCC--ceeeEEeccCCccCCeeEEEeccCCCEEEEe-ccCCeEEEE
Q 016185 329 NAAAIGNREGKIFVWELQSSP--PVLIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRW 389 (394)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw 389 (394)
.++|+|+.+|.|++|.+..+- ..++..++ -.+.|++++|+++|++|++| +....+--|
T Consensus 393 dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 393 DLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEeccccccccee
Confidence 799999999999999999873 23344443 34789999999999966655 444443333
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3e-32 Score=259.67 Aligned_cols=264 Identities=16% Similarity=0.239 Sum_probs=213.4
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC----e----eEEEEEecCCce
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----K----LHKSFVGHGDSI 131 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~----~~~~~~~~~~~v 131 (394)
+++|+.........+.......|...|.+++|+ |+|+ ++++|+.|+.|+||+.... . +...+. +...+
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs--~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 460 CKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFD--RDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhcccceEEEEeeccccccCCCCcEEEEEEC--CCCC-EEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 778887665554444422223588899999888 9998 9999999999999997532 1 223333 34679
Q ss_pred eEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCC
Q 016185 132 NEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 211 (394)
Q Consensus 132 ~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 211 (394)
.+++|++..+.+|++++. ||.|++||+.+++.+..+. +|...|++++|+|.+
T Consensus 536 ~~l~~~~~~~~~las~~~-------------------------Dg~v~lWd~~~~~~~~~~~---~H~~~V~~l~~~p~~ 587 (793)
T PLN00181 536 SGICWNSYIKSQVASSNF-------------------------EGVVQVWDVARSQLVTEMK---EHEKRVWSIDYSSAD 587 (793)
T ss_pred eeEEeccCCCCEEEEEeC-------------------------CCeEEEEECCCCeEEEEec---CCCCCEEEEEEcCCC
Confidence 999999867789999999 9999999999999888887 899999999999757
Q ss_pred CeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEE
Q 016185 212 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIV 288 (394)
Q Consensus 212 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~ 288 (394)
+.+|++|+.||.|++||+++. ..+..+..+ ..+.++.|. +.++++|+.||.|+
T Consensus 588 ~~~L~Sgs~Dg~v~iWd~~~~-----------------------~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~ 643 (793)
T PLN00181 588 PTLLASGSDDGSVKLWSINQG-----------------------VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVY 643 (793)
T ss_pred CCEEEEEcCCCEEEEEECCCC-----------------------cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence 889999999999999999883 234444433 578888884 78999999999999
Q ss_pred EecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCC----ceeeEEeccCCccCC
Q 016185 289 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP----PVLIARLSHAQSKSP 364 (394)
Q Consensus 289 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~ 364 (394)
+||+++... .+..+.+|...|.++.|. ++ .++++++.|+.|++||+.... ...+..+. +|...
T Consensus 644 iwD~~~~~~--------~~~~~~~h~~~V~~v~f~-~~--~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~ 710 (793)
T PLN00181 644 YYDLRNPKL--------PLCTMIGHSKTVSYVRFV-DS--STLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNV 710 (793)
T ss_pred EEECCCCCc--------cceEecCCCCCEEEEEEe-CC--CEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCC
Confidence 999986542 345567888999999997 44 489999999999999997531 13456666 88899
Q ss_pred eeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 365 IRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 365 v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
+..++|+|++.+|++|+.|+.|++|+..
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 9999999999999999999999999964
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=226.21 Aligned_cols=297 Identities=15% Similarity=0.206 Sum_probs=227.6
Q ss_pred ceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCce-eEEeeecccCCcccceEEEEEEEcCCCCcEE
Q 016185 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (394)
Q Consensus 24 ~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (394)
...-.|++|+..|.++++.| .|..|++|+-|. |++||+..... .+.++. ..+.....|.++.|+ +.|. .+
T Consensus 158 shEi~l~hgtk~Vsal~~Dp----~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~-l~P~E~h~i~sl~ys--~Tg~-~i 229 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDP----SGARFVSGSLDYTVKFWDFQGMDASMRSFRQ-LQPCETHQINSLQYS--VTGD-QI 229 (641)
T ss_pred cceEeccCCceEEEEeeecC----CCceeeeccccceEEEEecccccccchhhhc-cCcccccccceeeec--CCCC-eE
Confidence 34455688999999999999 799999999998 99999875432 222222 223455678889988 7888 66
Q ss_pred EEeecCCeEEEEECCCCeeEE-------------EEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccc
Q 016185 102 VAGGINGIIRVIDVSNEKLHK-------------SFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSN 168 (394)
Q Consensus 102 ~s~~~dg~i~vwd~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~ 168 (394)
++.+.....+|+|- .|..+. .-++|...++|.+|+|.....+++++.
T Consensus 230 Lvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~------------------- 289 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY------------------- 289 (641)
T ss_pred EEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC-------------------
Confidence 66666678999994 443222 235899999999999988899999999
Q ss_pred eeeeccCCcEEEEEecCCc-EEEEeec--cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCC
Q 016185 169 CLRVGQDESVRLWNVQTGI-CILIFAG--AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 245 (394)
Q Consensus 169 ~~~~~~d~~i~vwd~~~~~-~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 245 (394)
||++++||+...+ ..+.++. ..+..-+++..+|++ ++.+|++|+.||.|.+|+.+..-.
T Consensus 290 ------DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v----------- 351 (641)
T KOG0772|consen 290 ------DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV----------- 351 (641)
T ss_pred ------CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc-----------
Confidence 9999999998654 3444442 224456789999999 999999999999999999866211
Q ss_pred CCCCCccccccceeeeecCCC--ceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC--CCCCeEE
Q 016185 246 PSKFPTKYVQFPVFIASVHSN--YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWF 319 (394)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 319 (394)
......-..|.. .|+||.|+ |++|++-+.|+++++||++..++ ++....+ ...+-+.
T Consensus 352 ---------~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk--------pL~~~tgL~t~~~~td 414 (641)
T KOG0772|consen 352 ---------RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK--------PLNVRTGLPTPFPGTD 414 (641)
T ss_pred ---------ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc--------chhhhcCCCccCCCCc
Confidence 222445567777 89999998 99999999999999999998765 3333222 2234567
Q ss_pred EEEeecCCcceEEEEe------CCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEE
Q 016185 320 IKFSCDFHYNAAAIGN------REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 320 ~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 389 (394)
++|||+. .++++|+ ..|.+.+||..+.+ .+.++. -....|..+.|+|.-+.|..|+.||.++||
T Consensus 415 c~FSPd~--kli~TGtS~~~~~~~g~L~f~d~~t~d--~v~ki~--i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 415 CCFSPDD--KLILTGTSAPNGMTAGTLFFFDRMTLD--TVYKID--ISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cccCCCc--eEEEecccccCCCCCceEEEEecccee--eEEEec--CCCceEEEEeecchhhheeeecCCCceEEE
Confidence 8999999 6888876 35789999988874 556666 335789999999998889999999999987
No 68
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=223.81 Aligned_cols=285 Identities=13% Similarity=0.196 Sum_probs=234.5
Q ss_pred eeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEE
Q 016185 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (394)
Q Consensus 25 ~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 103 (394)
+...|.||.+.|.|++=+| ..-..+|+|+.|| |+|||+...+....++ .|.+.|..+++.. . .+++
T Consensus 58 Fv~~L~gHrdGV~~lakhp---~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-----AH~G~V~Gi~v~~----~-~~~t 124 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHP---NKLSTVASGSCDGEVKIWNLSQRECIRTFK-----AHEGLVRGICVTQ----T-SFFT 124 (433)
T ss_pred chhhccccccccchhhcCc---chhhhhhccccCceEEEEehhhhhhhheee-----cccCceeeEEecc----c-ceEE
Confidence 4556789999999999999 2347899999999 9999999988888888 7899999999873 3 6899
Q ss_pred eecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEe
Q 016185 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNV 183 (394)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~ 183 (394)
++.|.+|+.|.+.- .+.+++.+ ...+..+.-+. ....++||+. .|.|||.
T Consensus 125 vgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe---------------------------~i~IWD~ 174 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHR-KNSVFATCGE---------------------------QIDIWDE 174 (433)
T ss_pred ecCCcceeeeeccC-Ccceeeec-ccccccccccc-ccccccccCc---------------------------eeeeccc
Confidence 99999999999754 57777764 34567777666 6678999886 7999999
Q ss_pred cCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeec
Q 016185 184 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 263 (394)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (394)
+...++..+. .....|.++.|+|.....|++|+.|+.|.+||+++. .|+.....
T Consensus 175 ~R~~Pv~sms---wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~-----------------------~Pl~KVi~ 228 (433)
T KOG0268|consen 175 QRDNPVSSMS---WGADSISSVKFNPVETSILASCASDRSIVLYDLRQA-----------------------SPLKKVIL 228 (433)
T ss_pred ccCCccceee---cCCCceeEEecCCCcchheeeeccCCceEEEecccC-----------------------Cccceeee
Confidence 9888998888 577889999999977788899999999999999993 33332221
Q ss_pred CCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEE
Q 016185 264 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 341 (394)
Q Consensus 264 ~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 341 (394)
...-..|+|+ .-.+++++.|..++.||++..+. ++..+..|.+.|..+.|+|.| .-+++|+.|.+|+
T Consensus 229 -~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~--------p~~v~~dhvsAV~dVdfsptG--~EfvsgsyDksIR 297 (433)
T KOG0268|consen 229 -TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR--------PLNVHKDHVSAVMDVDFSPTG--QEFVSGSYDKSIR 297 (433)
T ss_pred -eccccceecCccccceeeccccccceehhhhhhcc--------cchhhcccceeEEEeccCCCc--chhccccccceEE
Confidence 2334567777 45788999999999999998764 678889999999999999999 5799999999999
Q ss_pred EEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 342 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
||.+..+.... +-+...-..|.++.||.|.+++++||+|+.|++|.-.
T Consensus 298 If~~~~~~SRd---iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 298 IFPVNHGHSRD---IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EeecCCCcchh---hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 99998874322 2222333579999999999999999999999999753
No 69
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=214.06 Aligned_cols=291 Identities=18% Similarity=0.293 Sum_probs=229.3
Q ss_pred eeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCC------------Cc------eeEEeeecccCCcccce
Q 016185 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE------------GG------VIAALQSYVDEDKEESF 86 (394)
Q Consensus 26 ~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~------------~~------~~~~~~~~~~~~~~~~v 86 (394)
..++..|++++.+-+|+| ||.++|+|+.|. |+|+|+.. ++ .++++- .|.++|
T Consensus 105 t~ylt~HK~~cR~aafs~----DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-----DH~dev 175 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSP----DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-----DHVDEV 175 (430)
T ss_pred eEEEeecccceeeeeeCC----CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-----hccCcc
Confidence 456788999999999999 899999999998 99999861 11 122222 688999
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEE--ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeee
Q 016185 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLF 164 (394)
Q Consensus 87 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~ 164 (394)
+++.|. |... +|++|+.|++|++||+......+.++ ....+|.++.|+| .+.+|+.|..
T Consensus 176 n~l~FH--Pre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTd--------------- 236 (430)
T KOG0640|consen 176 NDLDFH--PRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTD--------------- 236 (430)
T ss_pred cceeec--chhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecC---------------
Confidence 999988 8888 99999999999999987543333222 2456899999999 8899999998
Q ss_pred eccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCC
Q 016185 165 IRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 244 (394)
Q Consensus 165 ~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 244 (394)
...+++||+++-++...-.....|++.|+++.+++ .+++.++++.||.|++||--+.+
T Consensus 237 ----------Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~r----------- 294 (430)
T KOG0640|consen 237 ----------HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNR----------- 294 (430)
T ss_pred ----------CCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHH-----------
Confidence 89999999999988777666668999999999999 99999999999999999987732
Q ss_pred CCCCCCccccccceeee-ecCCC-ceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCC-----C
Q 016185 245 LPSKFPTKYVQFPVFIA-SVHSN-YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-----C 315 (394)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~~~~~-~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~ 315 (394)
++.++ ..|.+ .|.+..|. ++++++.+.|..+++|.+.+++ .+..+.+.. .
T Consensus 295 ------------Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R---------~l~~YtGAg~tgrq~ 353 (430)
T KOG0640|consen 295 ------------CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR---------MLKEYTGAGTTGRQK 353 (430)
T ss_pred ------------HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc---------eEEEEecCCcccchh
Confidence 34333 34554 48888887 8999999999999999999887 444444321 1
Q ss_pred CeEEEEEeecCCcceEEEEe-CCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 316 DIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 316 ~i~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
--+...|.... .+++.-. ..+.+.-||.++.....+.. .+|.+.+..+.-||.+.-+++|+.|..+++|--+
T Consensus 354 ~rtqAvFNhtE--dyVl~pDEas~slcsWdaRtadr~~l~s---lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 354 HRTQAVFNHTE--DYVLFPDEASNSLCSWDARTADRVALLS---LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhhcCcc--ceEEccccccCceeeccccchhhhhhcc---cCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 12234455555 3444433 35789999999885433333 3888999999999999999999999999999754
No 70
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=231.87 Aligned_cols=245 Identities=19% Similarity=0.295 Sum_probs=206.7
Q ss_pred CcccceEEEEEEEcC-CCCcEEEEeecCCeEEEEECCC-CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccc
Q 016185 81 DKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSL 158 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~ 158 (394)
+|...|.++.|. | .+. +|++++.|+.|+||++.. +++++++.+|..+|.+++|++ .+..++|++.
T Consensus 212 gH~kgvsai~~f--p~~~h-LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sf--------- 278 (503)
T KOG0282|consen 212 GHTKGVSAIQWF--PKKGH-LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASF--------- 278 (503)
T ss_pred CCccccchhhhc--cceee-EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeec---------
Confidence 899999999998 6 566 999999999999999876 899999999999999999999 8889999999
Q ss_pred eeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecc
Q 016185 159 ICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 238 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 238 (394)
|+.|++||+++|+++..+. ....++|+.|+|++.+.|++|+.|+.|+.||++++
T Consensus 279 ----------------D~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~------ 332 (503)
T KOG0282|consen 279 ----------------DRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG------ 332 (503)
T ss_pred ----------------ceeeeeeccccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch------
Confidence 9999999999999999997 66788999999955599999999999999999994
Q ss_pred ccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCC
Q 016185 239 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 316 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
..+.....|-..|..+.|- ++.+++.+.|+.+++|+.+.... ...+.... ...
T Consensus 333 -----------------kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~------ik~i~~~~--~hs 387 (503)
T KOG0282|consen 333 -----------------KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP------IKNIADPE--MHT 387 (503)
T ss_pred -----------------HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc------chhhcchh--hcc
Confidence 3466777889999999996 88999999999999999987642 11122222 234
Q ss_pred eEEEEEeecCCcceEEEEeCCCcEEEEEecCCCc-eeeEEeccCCcc--CCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 317 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-VLIARLSHAQSK--SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 317 i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
..++..+|++ .++++=+.|+.|.+|.+...-+ .....++ +|. +.-..+.|||||.+|++|+.||.+.+||.++
T Consensus 388 mP~~~~~P~~--~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 388 MPCLTLHPNG--KWFAAQSMDNYIAIFSTVPPFRLNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred CcceecCCCC--CeehhhccCceEEEEecccccccCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 5688999999 6999999999999999765321 1223344 443 4567789999999999999999999999876
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.9e-32 Score=218.39 Aligned_cols=267 Identities=22% Similarity=0.288 Sum_probs=206.4
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCC--CcEEEEceeeeEEeeccce
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKVIIISSLSLI 159 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~~i~~~~~~~~ 159 (394)
|.+-|.++... ++ .+++|+.||.+++||. .|+....+.+|.++|.+++|.-.+ ...|++++.
T Consensus 104 hdDWVSsv~~~----~~-~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~---------- 167 (423)
T KOG0313|consen 104 HDDWVSSVKGA----SK-WILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM---------- 167 (423)
T ss_pred chhhhhhhccc----Cc-eEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecC----------
Confidence 45555555443 45 9999999999999995 689999999999999998885422 246889998
Q ss_pred eeeeeeccceeeeccCCcEEEEEecCCcEEE-EeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccce-eec
Q 016185 160 CLLLFIRSNCLRVGQDESVRLWNVQTGICIL-IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT-YVE 237 (394)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~ 237 (394)
|.++++|.++.++... ......||...|.++...+ ++..+++|+.|..|++|+..+... ..+
T Consensus 168 ---------------Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 168 ---------------DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELE 231 (423)
T ss_pred ---------------CceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCcccccc
Confidence 9999999998775322 1222238999999999999 999999999999999999444211 111
Q ss_pred cc-cccCCCCCCCCccccccceeeeecCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCC
Q 016185 238 KS-FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC 315 (394)
Q Consensus 238 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
.. ..-++............|+..+.+|..+|.++.|+ ...+++++.|.+|+.||+.++.. ..++.. ..
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~---------~~~~~~-~k 301 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL---------KSTLTT-NK 301 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccc---------eeeeec-Cc
Confidence 11 11111112223344467899999999999999998 77999999999999999998862 333332 45
Q ss_pred CeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCce-eeEEeccCCccCCeeEEEeccCC-CEEEEeccCCeEEEEEcCC
Q 016185 316 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV-LIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 316 ~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~ 393 (394)
.++++.++|.. .+|++|+.|..|++||.+++... ....+. +|.+.|.++.|+|.. ..|++++.|+++++||+++
T Consensus 302 sl~~i~~~~~~--~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 302 SLNCISYSPLS--KLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred ceeEeeccccc--ceeeecCCCCceeecCCCCCCCceeEEeee--cchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 78999999988 79999999999999999987532 334444 999999999999964 5788999999999999986
Q ss_pred C
Q 016185 394 T 394 (394)
Q Consensus 394 ~ 394 (394)
+
T Consensus 378 ~ 378 (423)
T KOG0313|consen 378 T 378 (423)
T ss_pred C
Confidence 4
No 72
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-32 Score=231.91 Aligned_cols=284 Identities=19% Similarity=0.266 Sum_probs=235.0
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEE-EEEEEcCCCC
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT-VSWACNVDGI 98 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~ 98 (394)
..|++.+.+.+|...|..+++.+ +..+++++.|+ +++|+-..++.+.... -.+|.+-|.. +++.. .++.
T Consensus 2 ~~Y~ls~~l~gH~~DVr~v~~~~-----~~~i~s~sRd~t~~vw~~~~~~~l~~~~---~~~~~g~i~~~i~y~e-~~~~ 72 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDVRAVAVTD-----GVCIISGSRDGTVKVWAKKGKQYLETHA---FEGPKGFIANSICYAE-SDKG 72 (745)
T ss_pred CcceeEEEeccCccchheeEecC-----CeEEeecCCCCceeeeeccCccccccee---cccCcceeeccceecc-ccCc
Confidence 46889999999999999999885 67899999888 9999966655444222 1145566655 66653 2333
Q ss_pred cEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcE
Q 016185 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESV 178 (394)
Q Consensus 99 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (394)
.+++|+.|..|.+|...+..+...+++|+..|.+++... ++. ++|||. |.++
T Consensus 73 -~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSW-------------------------D~Ta 124 (745)
T KOG0301|consen 73 -RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSW-------------------------DSTA 124 (745)
T ss_pred -ceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEeccc-------------------------ccce
Confidence 699999999999999999999999999999999999776 444 999999 9999
Q ss_pred EEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccce
Q 016185 179 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 258 (394)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
++|.. +++...+. +|+..|.+++.-| ++ .++||+.|.+|++|.-.+ .+
T Consensus 125 kvW~~--~~l~~~l~---gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~~~-------------------------~l 172 (745)
T KOG0301|consen 125 KVWRI--GELVYSLQ---GHTASVWAVASLP-EN-TYVTGSADKTIKLWKGGT-------------------------LL 172 (745)
T ss_pred EEecc--hhhhcccC---CcchheeeeeecC-CC-cEEeccCcceeeeccCCc-------------------------hh
Confidence 99975 56666666 8999999999998 65 799999999999998766 47
Q ss_pred eeeecCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCC
Q 016185 259 FIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 337 (394)
Q Consensus 259 ~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 337 (394)
.++.+|.+.|+.+++- +..+++++.||.|++|++. ++ .+.++.+|..-++++...++. ..++++++|
T Consensus 173 ~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge---------~l~~~~ghtn~vYsis~~~~~--~~Ivs~gED 240 (745)
T KOG0301|consen 173 KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GE---------VLLEMHGHTNFVYSISMALSD--GLIVSTGED 240 (745)
T ss_pred hhhccchhheeeeEEecCCCeEeecCCceEEEEecc-Cc---------eeeeeeccceEEEEEEecCCC--CeEEEecCC
Confidence 7899999999999997 5599999999999999994 43 788999999999999977777 589999999
Q ss_pred CcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 338 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
++++||+.. .+...+.++ ...|.++.+-++|. +++|+.||.||||-.+
T Consensus 241 rtlriW~~~----e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 241 RTLRIWKKD----ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ceEEEeecC----ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 999999987 245555532 24788888888876 7778899999999865
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4e-31 Score=224.12 Aligned_cols=263 Identities=24% Similarity=0.369 Sum_probs=220.7
Q ss_pred eeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCc
Q 016185 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (394)
Q Consensus 4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~ 82 (394)
.++|..++...+.... ..+....+..|...+.++.|+| +++++++++.++ |++|++.+++.+..+. .|
T Consensus 24 l~~~~~~g~i~i~~~~--~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~~~~i~i~~~~~~~~~~~~~-----~~ 92 (289)
T cd00200 24 LATGSGDGTIKVWDLE--TGELLRTLKGHTGPVRDVAASA----DGTYLASGSSDKTIRLWDLETGECVRTLT-----GH 92 (289)
T ss_pred EEEeecCcEEEEEEee--CCCcEEEEecCCcceeEEEECC----CCCEEEEEcCCCeEEEEEcCcccceEEEe-----cc
Confidence 4556656665555433 3335566788999999999999 678899999887 9999999887777766 56
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeee
Q 016185 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLL 162 (394)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~ 162 (394)
...+.++.|. ++++ ++++++.+|.|.+||+.+++....+..|...+.+++|+| ++.++++++.
T Consensus 93 ~~~i~~~~~~--~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~------------- 155 (289)
T cd00200 93 TSYVSSVAFS--PDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQ------------- 155 (289)
T ss_pred CCcEEEEEEc--CCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcC-------------
Confidence 7788899888 7777 888888899999999998999999999999999999999 6788999888
Q ss_pred eeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccccc
Q 016185 163 LFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 242 (394)
Q Consensus 163 ~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 242 (394)
++.|++||+++++....+. .|...+.++.|+| ++..+++++.|+.+++||++..
T Consensus 156 ------------~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~---------- 209 (289)
T cd00200 156 ------------DGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG---------- 209 (289)
T ss_pred ------------CCcEEEEEccccccceeEe---cCccccceEEECC-CcCEEEEecCCCcEEEEECCCC----------
Confidence 9999999999888888887 7888999999999 8888888888999999999872
Q ss_pred CCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE
Q 016185 243 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 320 (394)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (394)
.++..+..|...+.++.|+ +.++++++.||.|++||+.+.+ ....+..|...+.++
T Consensus 210 -------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---------~~~~~~~~~~~i~~~ 267 (289)
T cd00200 210 -------------KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE---------CVQTLSGHTNSVTSL 267 (289)
T ss_pred -------------ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce---------eEEEccccCCcEEEE
Confidence 3455556788899999998 4677777779999999998765 456666788899999
Q ss_pred EEeecCCcceEEEEeCCCcEEEEE
Q 016185 321 KFSCDFHYNAAAIGNREGKIFVWE 344 (394)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg~i~iwd 344 (394)
+|+|++ .++++++.|+.|++|+
T Consensus 268 ~~~~~~--~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 268 AWSPDG--KRLASGSADGTIRIWD 289 (289)
T ss_pred EECCCC--CEEEEecCCCeEEecC
Confidence 999998 6899999999999996
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=217.30 Aligned_cols=282 Identities=17% Similarity=0.224 Sum_probs=242.4
Q ss_pred cceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 016185 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~v 112 (394)
..+.++...| ....+.+|+.|. +.++|..+++.+..++ +|...|..+.+. ++.. .+++++.|-.|+|
T Consensus 220 pgi~ald~~~----s~~~ilTGG~d~~av~~d~~s~q~l~~~~-----Gh~kki~~v~~~--~~~~-~v~~aSad~~i~v 287 (506)
T KOG0289|consen 220 PGITALDIIP----SSSKILTGGEDKTAVLFDKPSNQILATLK-----GHTKKITSVKFH--KDLD-TVITASADEIIRV 287 (506)
T ss_pred CCeeEEeecC----CCCcceecCCCCceEEEecchhhhhhhcc-----CcceEEEEEEec--cchh-heeecCCcceEEe
Confidence 4578888887 357899999996 9999999999888888 678888888777 8887 8999999999999
Q ss_pred EECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEe
Q 016185 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIF 192 (394)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~ 192 (394)
|.............|..+|+.+..+| .+.+|++++. |++..+.|++++..+...
T Consensus 288 ws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~-------------------------d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 288 WSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASN-------------------------DGTWAFSDISSGSQLTVV 341 (506)
T ss_pred eccccccCccccccccccceeeeecc-CCcEEEEecC-------------------------CceEEEEEccCCcEEEEE
Confidence 99988888888889999999999999 8899999999 999999999999988777
Q ss_pred eccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEE
Q 016185 193 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 272 (394)
Q Consensus 193 ~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 272 (394)
... ...-.+++.+|+| ||.+|.+|..||.|++||+.. +..+..+.+|.++|..++
T Consensus 342 s~~-~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks-----------------------~~~~a~Fpght~~vk~i~ 396 (506)
T KOG0289|consen 342 SDE-TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS-----------------------QTNVAKFPGHTGPVKAIS 396 (506)
T ss_pred eec-cccceeEEeeEcC-CceEEeccCCCceEEEEEcCC-----------------------ccccccCCCCCCceeEEE
Confidence 611 1234689999999 999999999999999999999 445778889999999999
Q ss_pred Ee--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCC-CCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCC
Q 016185 273 WL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 349 (394)
Q Consensus 273 ~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (394)
|+ |-++++++.|+.|++||++..+ .+.++...+ .++..+.|.+.| .+|+.++.|=.|++++-.+.+
T Consensus 397 FsENGY~Lat~add~~V~lwDLRKl~---------n~kt~~l~~~~~v~s~~fD~SG--t~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 397 FSENGYWLATAADDGSVKLWDLRKLK---------NFKTIQLDEKKEVNSLSFDQSG--TYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred eccCceEEEEEecCCeEEEEEehhhc---------ccceeeccccccceeEEEcCCC--CeEEeecceeEEEEEeccccc
Confidence 98 7799999999999999999776 344444332 368899999999 689999888788888777776
Q ss_pred ceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 350 PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 350 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
...+..+. .|.+..+.+.|....++++++|.|..++++.+
T Consensus 466 W~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeehhh--hcccccceeeecccceEEeeccchhheEEeec
Confidence 66677776 88889999999999999999999999999865
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=208.74 Aligned_cols=272 Identities=17% Similarity=0.259 Sum_probs=219.2
Q ss_pred ccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCC
Q 016185 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (394)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (394)
.+.+.+...+..|.++|+++|.+ +.++|+|+.|. |+|||+.+..++..+- .|.+.|+++.|.......
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs------~~~~aSGssDetI~IYDm~k~~qlg~ll-----~HagsitaL~F~~~~S~s 98 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS------GPYVASGSSDETIHIYDMRKRKQLGILL-----SHAGSITALKFYPPLSKS 98 (362)
T ss_pred ceeeeccccccccccceeEEEec------ceeEeccCCCCcEEEEeccchhhhccee-----ccccceEEEEecCCcchh
Confidence 34556677778999999999997 68999999987 9999999998888887 689999999998433334
Q ss_pred cEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcE
Q 016185 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESV 178 (394)
Q Consensus 99 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (394)
.|++|+.||.|.+|+....+++.++++|.+.|+.++.+| .+.+.++.+. |+.+
T Consensus 99 -hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~-------------------------D~~l 151 (362)
T KOG0294|consen 99 -HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGG-------------------------DQVL 151 (362)
T ss_pred -heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcC-------------------------Ccee
Confidence 899999999999999999999999999999999999999 8888888888 9999
Q ss_pred EEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccce
Q 016185 179 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 258 (394)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
+.||+-+|+.-..++ -...-+.+.|+| .|.+|+.+..+ .|-+|.+.+... .
T Consensus 152 r~WNLV~Gr~a~v~~----L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v-----------------------~ 202 (362)
T KOG0294|consen 152 RTWNLVRGRVAFVLN----LKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASV-----------------------F 202 (362)
T ss_pred eeehhhcCccceeec----cCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhH-----------------------h
Confidence 999999998776665 333445599999 88888887765 599999988321 1
Q ss_pred eeeecCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCC
Q 016185 259 FIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 337 (394)
Q Consensus 259 ~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 337 (394)
..+. .+..+.|+.|. +..+++|..|+.|.+||..... ++..+..|...|..+.+-.+....+|++++.|
T Consensus 203 ~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~---------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 203 REIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSDT---------PLTEFLAHENRVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred hhhh-ccccceeeeecCCceEEEecCCceEEEeccCCCc---------cceeeecchhheeeeEEEecCCceEEEEeccC
Confidence 1111 22457777776 8899999999999999999755 67889999999999997666554799999999
Q ss_pred CcEEEEEecCCC---ceeeEEeccCCccCCeeEEEec
Q 016185 338 GKIFVWELQSSP---PVLIARLSHAQSKSPIRQTAMS 371 (394)
Q Consensus 338 g~i~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~~s 371 (394)
|.|++||++... +.++..+. ...+++++...
T Consensus 273 G~I~vWd~~~~~k~~~~~l~e~n---~~~RltCl~~~ 306 (362)
T KOG0294|consen 273 GFIKVWDIDMETKKRPTLLAELN---TNVRLTCLRVK 306 (362)
T ss_pred ceEEEEEccccccCCcceeEEee---cCCccceeeeh
Confidence 999999998752 23333333 23566666554
No 76
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-32 Score=222.40 Aligned_cols=252 Identities=18% Similarity=0.307 Sum_probs=212.2
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC----------eeEEEEEecCCceeEEEEcCCCCcEEEEceee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKV 150 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~ 150 (394)
.|.+.|+.+... |....++++++..+.|.|||...- .+-.++.+|...-++++|++.....|++++.
T Consensus 122 ~h~gEVnRaRym--PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~- 198 (422)
T KOG0264|consen 122 NHDGEVNRARYM--PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD- 198 (422)
T ss_pred cCCccchhhhhC--CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC-
Confidence 577888888777 777768999999999999997542 1223788999888899999988889999999
Q ss_pred eEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE-------EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCc
Q 016185 151 IIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC-------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 223 (394)
Q Consensus 151 i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~ 223 (394)
|+.|++||+..... ...+. +|...|..++|++.+..+|.+++.|+.
T Consensus 199 ------------------------d~~i~lwdi~~~~~~~~~~~p~~~~~---~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 199 ------------------------DHTICLWDINAESKEDKVVDPKTIFS---GHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred ------------------------CCcEEEEeccccccCCccccceEEee---cCCcceehhhccccchhhheeecCCCe
Confidence 99999999975432 33344 899999999999988899999999999
Q ss_pred EEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCC
Q 016185 224 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPG 300 (394)
Q Consensus 224 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~ 300 (394)
+.|||.|+.. .++.....+|...|.|++|+ +..||+|+.|++|.+||+++...
T Consensus 252 L~iwD~R~~~---------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--- 307 (422)
T KOG0264|consen 252 LMIWDTRSNT---------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--- 307 (422)
T ss_pred EEEEEcCCCC---------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---
Confidence 9999999621 44667788999999999998 67999999999999999998865
Q ss_pred CCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCce----------eeEEeccCCccCCeeEEEe
Q 016185 301 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV----------LIARLSHAQSKSPIRQTAM 370 (394)
Q Consensus 301 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~v~~~~~ 370 (394)
++..+.+|...|..+.|+|... ..||+++.|+.+.+||+..-... ....|.|.||...|..+.|
T Consensus 308 -----~lh~~e~H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW 381 (422)
T KOG0264|consen 308 -----PLHTFEGHEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW 381 (422)
T ss_pred -----CceeccCCCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC
Confidence 7889999999999999999988 79999999999999999642111 1223457799999999999
Q ss_pred ccCCC-EEEEeccCCeEEEEEcC
Q 016185 371 SYDGS-TILSCCEDGAIWRWDAI 392 (394)
Q Consensus 371 s~~~~-~l~s~~~dg~i~iwd~~ 392 (394)
+|+.. .|+|.++|+.+.||+..
T Consensus 382 np~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 382 NPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCeEEEEecCCceEEEeecc
Confidence 99876 56788999999999976
No 77
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-30 Score=227.00 Aligned_cols=323 Identities=19% Similarity=0.220 Sum_probs=247.3
Q ss_pred ecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEc
Q 016185 16 TPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN 94 (394)
Q Consensus 16 ~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 94 (394)
..+.-+.-+..++++++.+.|+++.-+| --+.+|.|..+| |.|++++.++.+.+++ ...+.|+.++|.
T Consensus 185 ql~Nvrt~K~v~~f~~~~s~IT~ieqsP----aLDVVaiG~~~G~ViifNlK~dkil~sFk-----~d~g~VtslSFr-- 253 (910)
T KOG1539|consen 185 QLWNVRTGKVVYTFQEFFSRITAIEQSP----ALDVVAIGLENGTVIIFNLKFDKILMSFK-----QDWGRVTSLSFR-- 253 (910)
T ss_pred EEEEeccCcEEEEecccccceeEeccCC----cceEEEEeccCceEEEEEcccCcEEEEEE-----ccccceeEEEec--
Confidence 3345566678889999999999999999 578999999999 9999999999999998 335899999988
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCeeEEEEE-ecCCceeEEEEcCCCCcEEEEcee--eeEEe-----------------
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASK--VIIIS----------------- 154 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~--~i~~~----------------- 154 (394)
.||.+++++|+..|.+.+||++..+.+..++ .|.+.|....|.| +...+++++. .+++|
T Consensus 254 tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G 332 (910)
T KOG1539|consen 254 TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG 332 (910)
T ss_pred cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence 9999999999999999999998776554443 4444444444444 3333333332 11111
Q ss_pred --------------------------------------------------------------------------------
Q 016185 155 -------------------------------------------------------------------------------- 154 (394)
Q Consensus 155 -------------------------------------------------------------------------------- 154 (394)
T Consensus 333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence
Q ss_pred ---------------ec--------------------cceeeeeeeccc-eeeeccCCcEEEEEecCCcEEEEeeccCCC
Q 016185 155 ---------------SL--------------------SLICLLLFIRSN-CLRVGQDESVRLWNVQTGICILIFAGAGGH 198 (394)
Q Consensus 155 ---------------~~--------------------~~~~~~~~~~~~-~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 198 (394)
+. ...++.....++ .+.|.+.|.|-+|++.+|-....+.....|
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 00 001222222333 555678999999999999888877333379
Q ss_pred cccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--Cc
Q 016185 199 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 276 (394)
Q Consensus 199 ~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 276 (394)
..+|++++.+. .++.+++++.+|.+++||+.... .+..+. -...+.++.++ ..
T Consensus 493 ~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~-----------------------l~~~l~-l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 493 KGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKV-----------------------LKKSLR-LGSSITGIVYHRVSD 547 (910)
T ss_pred cCceeEEEecC-CCceEEEccCcceEEEEecCCcc-----------------------eeeeec-cCCCcceeeeeehhh
Confidence 99999999998 88899999999999999999822 222222 12344555554 77
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEe
Q 016185 277 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 356 (394)
Q Consensus 277 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (394)
.++.+..|-.|+++|..+.+ .++.+.+|...|+.++|||+| ++|++++.|++|++||+.++. ++-.+
T Consensus 548 l~a~~~ddf~I~vvD~~t~k---------vvR~f~gh~nritd~~FS~Dg--rWlisasmD~tIr~wDlpt~~--lID~~ 614 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRK---------VVREFWGHGNRITDMTFSPDG--RWLISASMDSTIRTWDLPTGT--LIDGL 614 (910)
T ss_pred hhhhhcCceeEEEEEchhhh---------hhHHhhccccceeeeEeCCCC--cEEEEeecCCcEEEEeccCcc--eeeeE
Confidence 88999999999999999877 789999999999999999999 799999999999999999985 34433
Q ss_pred ccCCccCCeeEEEeccCCCEEEEeccC-CeEEEEEc
Q 016185 357 SHAQSKSPIRQTAMSYDGSTILSCCED-GAIWRWDA 391 (394)
Q Consensus 357 ~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~ 391 (394)
. -..+++++.|+|+|.+||+...| .-|++|--
T Consensus 615 ~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 615 L---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred e---cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 3 22789999999999999999988 56999963
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.7e-31 Score=234.96 Aligned_cols=246 Identities=22% Similarity=0.392 Sum_probs=218.0
Q ss_pred cceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEE
Q 016185 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (394)
Q Consensus 23 ~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (394)
+.....+.||.+.|.+++|.. -++++++|+.|. ++|||..+|++...+. +|.+.+.++... .. ++
T Consensus 239 ~~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-----gh~stv~~~~~~----~~-~~ 304 (537)
T KOG0274|consen 239 YLILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCSTGECTHSLQ-----GHTSSVRCLTID----PF-LL 304 (537)
T ss_pred eEEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCCCcEEEEec-----CCCceEEEEEcc----Cc-eE
Confidence 344444999999999999985 478999999998 9999999999999999 788888888765 33 78
Q ss_pred EEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEE
Q 016185 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLW 181 (394)
Q Consensus 102 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw 181 (394)
++|+.|.+|++|++++++++..+.+|.++|.++..+ +.++++|+. |++|++|
T Consensus 305 ~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~-------------------------d~~v~VW 356 (537)
T KOG0274|consen 305 VSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSY-------------------------DGTVKVW 356 (537)
T ss_pred eeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEec-------------------------CceEEEE
Confidence 999999999999999999999999999999999996 479999999 9999999
Q ss_pred EecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeee
Q 016185 182 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 261 (394)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (394)
|+.+++++..+. +|...|+++.+.+ . ..+++|+.|++|++||+++.. .++..+
T Consensus 357 ~~~~~~cl~sl~---gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~----------------------~c~~tl 409 (537)
T KOG0274|consen 357 DPRTGKCLKSLS---GHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKR----------------------KCIHTL 409 (537)
T ss_pred Ehhhceeeeeec---CCcceEEEEEecC-c-ceEEeeeeccceEeecCCchh----------------------hhhhhh
Confidence 999999999999 8999999998875 4 889999999999999999931 568899
Q ss_pred ecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC-CCCCeEEEEEeecCCcceEEEEeCCCcE
Q 016185 262 SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKI 340 (394)
Q Consensus 262 ~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i 340 (394)
.+|...+..+.+.++++++++.|++|++||..+++ +++.+.. |...|.++++. . ..+++++.||.+
T Consensus 410 ~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~---------~~~~~~~~~~~~v~~l~~~--~--~~il~s~~~~~~ 476 (537)
T KOG0274|consen 410 QGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGE---------CLRTLEGRHVGGVSALALG--K--EEILCSSDDGSV 476 (537)
T ss_pred cCCcccccccccccceeEeccccccEEEeecccCc---------eeeeeccCCcccEEEeecC--c--ceEEEEecCCee
Confidence 99999999999999999999999999999999887 5667776 56778888776 2 479999999999
Q ss_pred EEEEecCCCc
Q 016185 341 FVWELQSSPP 350 (394)
Q Consensus 341 ~iwd~~~~~~ 350 (394)
++||+++++.
T Consensus 477 ~l~dl~~~~~ 486 (537)
T KOG0274|consen 477 KLWDLRSGTL 486 (537)
T ss_pred EEEecccCch
Confidence 9999999853
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-32 Score=221.84 Aligned_cols=261 Identities=18% Similarity=0.302 Sum_probs=215.6
Q ss_pred cCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEee-----ecccCCcccceEEEEEEEcCCCCcEEEEe
Q 016185 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQ-----SYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 104 (394)
.|.+.|+.+.+.| ++..++|+.+.++ |.|||..+-....... .....+|+..=+.++|+....| .|+++
T Consensus 122 ~h~gEVnRaRymP---Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g--~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMP---QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG--TLLSG 196 (422)
T ss_pred cCCccchhhhhCC---CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce--eEeec
Confidence 5899999999999 4678899888888 9999987543222111 0011156666677999955455 79999
Q ss_pred ecCCeEEEEECCCC-------eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCc
Q 016185 105 GINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDES 177 (394)
Q Consensus 105 ~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (394)
+.|+.|++||+... .+...+.+|...|..++|++.+..+|++++. |+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d-------------------------d~~ 251 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD-------------------------DGK 251 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC-------------------------CCe
Confidence 99999999999743 2356678999999999999989999999999 999
Q ss_pred EEEEEecC--CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccc
Q 016185 178 VRLWNVQT--GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 255 (394)
Q Consensus 178 i~vwd~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (394)
+.|||+++ .+...... +|.++|.|++|+|.++..|++|+.|++|.+||+|+. .
T Consensus 252 L~iwD~R~~~~~~~~~~~---ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL----------------------~ 306 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVK---AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL----------------------N 306 (422)
T ss_pred EEEEEcCCCCCCCccccc---ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc----------------------c
Confidence 99999994 44555555 899999999999988999999999999999999994 3
Q ss_pred cceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCC-----CCCCcceecccccCCCCCeEEEEEeecCC
Q 016185 256 FPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFH 327 (394)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (394)
.++..+.+|...|.+|.|+ ...+++++.|+++.+||+..-... ...+..+++....+|...|..+.|+|+..
T Consensus 307 ~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP 386 (422)
T KOG0264|consen 307 KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP 386 (422)
T ss_pred cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC
Confidence 4788999999999999998 559999999999999999865322 23456667888899999999999999987
Q ss_pred cceEEEEeCCCcEEEEEecC
Q 016185 328 YNAAAIGNREGKIFVWELQS 347 (394)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~ 347 (394)
-.+++.++|+.+.||++..
T Consensus 387 -W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 387 -WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred -eEEEEecCCceEEEeeccc
Confidence 5889999999999999874
No 80
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.7e-30 Score=229.63 Aligned_cols=269 Identities=17% Similarity=0.217 Sum_probs=198.0
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeee--------cccCCcccceEEEEEEEcC-CCCcEEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQS--------YVDEDKEESFYTVSWACNV-DGIPFLV 102 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~-~~~~~l~ 102 (394)
-..|+....++ ++..+++++.+. ...|+...+..+..+.. ....+|.+.|.+++|+ | ++. +|+
T Consensus 20 ~~~i~~~~~~~----d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fs--P~d~~-~La 92 (493)
T PTZ00421 20 FLNVTPSTALW----DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFN--PFDPQ-KLF 92 (493)
T ss_pred eeccccccccC----CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEc--CCCCC-EEE
Confidence 34566666666 455566666666 56777544432211110 0112688999999998 7 676 999
Q ss_pred EeecCCeEEEEECCCC-------eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccC
Q 016185 103 AGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQD 175 (394)
Q Consensus 103 s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d 175 (394)
+|+.|++|++||+.++ +++..+.+|...|.+++|+|...++|++++. |
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~-------------------------D 147 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA-------------------------D 147 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC-------------------------C
Confidence 9999999999999764 3567888999999999999965689999999 9
Q ss_pred CcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccc
Q 016185 176 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 255 (394)
Q Consensus 176 ~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (394)
+.|++||+++++....+. +|...|.+++|+| ++.+|++++.|+.|++||++++
T Consensus 148 gtVrIWDl~tg~~~~~l~---~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg----------------------- 200 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIK---CHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDG----------------------- 200 (493)
T ss_pred CEEEEEECCCCeEEEEEc---CCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCC-----------------------
Confidence 999999999999888887 7999999999999 9999999999999999999983
Q ss_pred cceeeeecCCCce-EEEEEe--CcEEEEee----cCCeEEEecCCCCCCCCCCCcceecccccCC-CCCeEEEEEeecCC
Q 016185 256 FPVFIASVHSNYV-DCNRWL--GDFILSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFH 327 (394)
Q Consensus 256 ~~~~~~~~~~~~i-~~~~~~--~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~ 327 (394)
..+..+..|.... ..+.|. +..+++++ .|+.|++||+++... .+.....+ ...+....|++++
T Consensus 201 ~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--------p~~~~~~d~~~~~~~~~~d~d~- 271 (493)
T PTZ00421 201 TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--------PYSTVDLDQSSALFIPFFDEDT- 271 (493)
T ss_pred cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--------ceeEeccCCCCceEEEEEcCCC-
Confidence 3456677777643 345565 45666544 479999999987542 22222222 2345566788888
Q ss_pred cceEEEEe-CCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccC
Q 016185 328 YNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 373 (394)
Q Consensus 328 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 373 (394)
.+|++++ .|+.|++||+.+++.. .... ..+..++..++|.|.
T Consensus 272 -~~L~lggkgDg~Iriwdl~~~~~~--~~~~-~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 272 -NLLYIGSKGEGNIRCFELMNERLT--FCSS-YSSVEPHKGLCMMPK 314 (493)
T ss_pred -CEEEEEEeCCCeEEEEEeeCCceE--EEee-ccCCCCCcceEeccc
Confidence 5777776 5999999999988532 2222 134567888888885
No 81
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-32 Score=218.25 Aligned_cols=269 Identities=14% Similarity=0.196 Sum_probs=217.0
Q ss_pred eeecCCCceeeeecc-cccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCC
Q 016185 4 TAIGCEPLVGSLTPS-KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (394)
Q Consensus 4 ~a~g~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~ 81 (394)
.|.+..+.+..+..- ....+++.+++.+|..+|.-+.||| |.++|++|+.+. +.+||+.+|+....+.. .
T Consensus 239 LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP----DdryLlaCg~~e~~~lwDv~tgd~~~~y~~----~ 310 (519)
T KOG0293|consen 239 LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP----DDRYLLACGFDEVLSLWDVDTGDLRHLYPS----G 310 (519)
T ss_pred EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC----CCCeEEecCchHheeeccCCcchhhhhccc----C
Confidence 345555555444322 3344899999999999999999999 677888888887 99999999998776652 4
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec-CCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
+...+.+++|. |||. .+++|+.|+.+..||++ |......++- ...|.+++.++ ++..+++...
T Consensus 311 ~~~S~~sc~W~--pDg~-~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~----------- 374 (519)
T KOG0293|consen 311 LGFSVSSCAWC--PDGF-RFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITY-DGKYVLLVTV----------- 374 (519)
T ss_pred cCCCcceeEEc--cCCc-eeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcC-CCcEEEEEec-----------
Confidence 67889999999 9999 99999999999999975 5555555542 35699999999 6666666667
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
|..|++++.++......+. ...+|++++.+. +++++++-=.+..+++||+...
T Consensus 375 --------------d~~i~l~~~e~~~dr~lis----e~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~-------- 427 (519)
T KOG0293|consen 375 --------------DKKIRLYNREARVDRGLIS----EEQPITSFSISK-DGKLALVNLQDQEIHLWDLEEN-------- 427 (519)
T ss_pred --------------ccceeeechhhhhhhcccc----ccCceeEEEEcC-CCcEEEEEcccCeeEEeecchh--------
Confidence 9999999998776665554 678999999998 9999999999999999999973
Q ss_pred ccCCCCCCCCccccccceeeeecCCCc--eEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCC
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNY--VDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC 315 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
..+....+|... +-.-+|- ..++++|+.|+.|++|+..+++ ++..+.+|..
T Consensus 428 ---------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---------ll~~LsGHs~ 483 (519)
T KOG0293|consen 428 ---------------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---------LLAVLSGHSK 483 (519)
T ss_pred ---------------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---------eeEeecCCcc
Confidence 345556666654 2222332 4699999999999999999887 7899999999
Q ss_pred CeEEEEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 316 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 316 ~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
.|++++|+|... .++|+++.||+|+||-....
T Consensus 484 ~vNcVswNP~~p-~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 484 TVNCVSWNPADP-EMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eeeEEecCCCCH-HHhhccCCCCeEEEecCCcc
Confidence 999999999887 69999999999999987643
No 82
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=6.7e-30 Score=226.85 Aligned_cols=246 Identities=15% Similarity=0.172 Sum_probs=186.0
Q ss_pred ecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCC-CCcEEEEeecCCeEEEEECCCCe--------eEEEE
Q 016185 55 VGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEK--------LHKSF 124 (394)
Q Consensus 55 ~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~ 124 (394)
|+..+ +++|+......+..+. +|...|.+++|+ |+ +. +|++|+.||.|+|||+.++. ++..+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~-----gH~~~V~~lafs--P~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L 121 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK-----GHTSSILDLQFN--PCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL 121 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc-----CCCCCEEEEEEc--CCCCC-EEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence 33445 8899877666656665 788999999998 76 55 99999999999999997542 34567
Q ss_pred EecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEE
Q 016185 125 VGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLS 204 (394)
Q Consensus 125 ~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~ 204 (394)
.+|...|.+++|+|.+..+|++++. |+.|++||+++++....+. |...|.+
T Consensus 122 ~gH~~~V~sVaf~P~g~~iLaSgS~-------------------------DgtIrIWDl~tg~~~~~i~----~~~~V~S 172 (568)
T PTZ00420 122 KGHKKKISIIDWNPMNYYIMCSSGF-------------------------DSFVNIWDIENEKRAFQIN----MPKKLSS 172 (568)
T ss_pred ecCCCcEEEEEECCCCCeEEEEEeC-------------------------CCeEEEEECCCCcEEEEEe----cCCcEEE
Confidence 8899999999999965566789998 9999999999998877775 6678999
Q ss_pred EEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEE-----Ee--CcE
Q 016185 205 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR-----WL--GDF 277 (394)
Q Consensus 205 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~--~~~ 277 (394)
++|+| ++.+|++++.|+.|++||++++ ..+..+.+|.+.+.+.. |+ +++
T Consensus 173 lswsp-dG~lLat~s~D~~IrIwD~Rsg-----------------------~~i~tl~gH~g~~~s~~v~~~~fs~d~~~ 228 (568)
T PTZ00420 173 LKWNI-KGNLLSGTCVGKHMHIIDPRKQ-----------------------EIASSFHIHDGGKNTKNIWIDGLGGDDNY 228 (568)
T ss_pred EEECC-CCCEEEEEecCCEEEEEECCCC-----------------------cEEEEEecccCCceeEEEEeeeEcCCCCE
Confidence 99999 9999999999999999999983 34667778877643322 22 568
Q ss_pred EEEeecCC----eEEEecCCCCCCCCCCCcceeccc--ccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCce
Q 016185 278 ILSKSVDN----EIVLWEPKMKEQSPGEGTADILQK--YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 351 (394)
Q Consensus 278 l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (394)
+++++.|+ .|+|||++.... ++.. +..+...+......+++ .++++|+.|+.|++|++..+.
T Consensus 229 IlTtG~d~~~~R~VkLWDlr~~~~--------pl~~~~ld~~~~~L~p~~D~~tg--~l~lsGkGD~tIr~~e~~~~~-- 296 (568)
T PTZ00420 229 ILSTGFSKNNMREMKLWDLKNTTS--------ALVTMSIDNASAPLIPHYDESTG--LIYLIGKGDGNCRYYQHSLGS-- 296 (568)
T ss_pred EEEEEcCCCCccEEEEEECCCCCC--------ceEEEEecCCccceEEeeeCCCC--CEEEEEECCCeEEEEEccCCc--
Confidence 88888774 799999996432 2222 22233333333334445 688999999999999998764
Q ss_pred eeEEeccCCccCCeeEEEeccCC
Q 016185 352 LIARLSHAQSKSPIRQTAMSYDG 374 (394)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~s~~~ 374 (394)
+..+....+..++.+++|.|+.
T Consensus 297 -~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 297 -IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred -EEeecccccCCCccceEEcccc
Confidence 3334433466888999999964
No 83
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7e-31 Score=225.64 Aligned_cols=321 Identities=17% Similarity=0.252 Sum_probs=227.6
Q ss_pred ceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc---EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcE
Q 016185 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 24 ~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~---i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (394)
+..+.+..|..+++|+|||| +|+++|+|-.+. ++||++..-..+.++. .|+..+.+++|+ |.++ +
T Consensus 69 tQ~hlvnssRk~~t~vAfS~----~GryvatGEcG~~pa~kVw~la~h~vVAEfv-----dHKY~vtcvaFs--p~~k-y 136 (1080)
T KOG1408|consen 69 TQSHLVNSSRKPLTCVAFSQ----NGRYVATGECGRTPASKVWSLAFHGVVAEFV-----DHKYNVTCVAFS--PGNK-Y 136 (1080)
T ss_pred chhheecccCcceeEEEEcC----CCcEEEecccCCCccceeeeeccccchhhhh-----hccccceeeeec--CCCc-E
Confidence 34444566788999999999 899999997554 9999999988888888 789999999998 8899 8
Q ss_pred EEEeec--CCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEcee-eeEEeec---------------------
Q 016185 101 LVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-VIIISSL--------------------- 156 (394)
Q Consensus 101 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-~i~~~~~--------------------- 156 (394)
+++.+. |-.|.+||++.......-+ -...|..++|+. ++.++++.+. .+++|.+
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~fsE-dgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~ 214 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAFSE-DGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGN 214 (1080)
T ss_pred EEeeccccceEEEhhhhhhcccccccc-cceeEEEEEEcc-CCceeeeeeeeeEEEEEeeccccccCCccccchhhhccc
Confidence 887665 4567788876443322222 234567777777 5555555444 6666654
Q ss_pred --------------------------------------------------------------------------------
Q 016185 157 -------------------------------------------------------------------------------- 156 (394)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (394)
T Consensus 215 lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~ 294 (1080)
T KOG1408|consen 215 LRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAG 294 (1080)
T ss_pred cccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhcc
Confidence
Q ss_pred ------------------------------------------cceeee--------------------------------
Q 016185 157 ------------------------------------------SLICLL-------------------------------- 162 (394)
Q Consensus 157 ------------------------------------------~~~~~~-------------------------------- 162 (394)
..+.++
T Consensus 295 Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~ 374 (1080)
T KOG1408|consen 295 TLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWD 374 (1080)
T ss_pred ccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeee
Confidence 000000
Q ss_pred --------------eeeccceeeeccCCcEEEEEecCCcEEEEeec----------------------------------
Q 016185 163 --------------LFIRSNCLRVGQDESVRLWNVQTGICILIFAG---------------------------------- 194 (394)
Q Consensus 163 --------------~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~---------------------------------- 194 (394)
..+.+-|+++++|++|++||+..+.--..+..
T Consensus 375 Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s 454 (1080)
T KOG1408|consen 375 VENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVS 454 (1080)
T ss_pred eccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchh
Confidence 11123588899999999999875221111100
Q ss_pred cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe
Q 016185 195 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 274 (394)
Q Consensus 195 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 274 (394)
.-.....+.+++.+| ++.+|++|..-|++++|++... ..+..++.|...|.|+.|+
T Consensus 455 ~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l-----------------------~~~~~~eAHesEilcLeyS 510 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQEL-----------------------EYTCFMEAHESEILCLEYS 510 (1080)
T ss_pred hcCcccceEEEEECC-CcceecccCccCceEEEEehhh-----------------------hhhhheecccceeEEEeec
Confidence 002345689999999 9999999999999999999983 3466889999999999998
Q ss_pred -----CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCc---------------------
Q 016185 275 -----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY--------------------- 328 (394)
Q Consensus 275 -----~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------------- 328 (394)
.++|++++.|.-|++||....-. +++++..|...|+++.|..++-.
T Consensus 511 ~p~~~~kLLASasrdRlIHV~Dv~rny~--------l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~ 582 (1080)
T KOG1408|consen 511 FPVLTNKLLASASRDRLIHVYDVKRNYD--------LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS 582 (1080)
T ss_pred CchhhhHhhhhccCCceEEEEecccccc--------hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc
Confidence 45899999999999999875422 34444444444444444333210
Q ss_pred --------------------------ceEEEEeCCCcEEEEEecCCCc--------------------------------
Q 016185 329 --------------------------NAAAIGNREGKIFVWELQSSPP-------------------------------- 350 (394)
Q Consensus 329 --------------------------~~l~~~~~dg~i~iwd~~~~~~-------------------------------- 350 (394)
.++++++.|..|+|||+.+++.
T Consensus 583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence 4666677777777777655431
Q ss_pred -----------eeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 351 -----------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 351 -----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
.++.++. +|...|+.+.|.+|-+.|++.+.||.|.||.+.
T Consensus 663 ktl~~~Df~sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CceEEEEeccchhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECc
Confidence 1233333 789999999999999999999999999999985
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.8e-32 Score=204.50 Aligned_cols=261 Identities=18% Similarity=0.299 Sum_probs=211.6
Q ss_pred cCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccc
Q 016185 7 GCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEES 85 (394)
Q Consensus 7 g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~ 85 (394)
+|-+..+++..-... ...-++.||.++|++...+. +....|+++.|- -+|||..+|..+..++ |+.-
T Consensus 35 a~kd~~pmlr~g~tg--dwigtfeghkgavw~~~l~~----na~~aasaaadftakvw~a~tgdelhsf~------hkhi 102 (334)
T KOG0278|consen 35 ASKDGKPMLRNGDTG--DWIGTFEGHKGAVWSATLNK----NATRAASAAADFTAKVWDAVTGDELHSFE------HKHI 102 (334)
T ss_pred eccCCCchhccCCCC--CcEEeeeccCcceeeeecCc----hhhhhhhhcccchhhhhhhhhhhhhhhhh------hhhe
Confidence 455555555533333 34678999999999999986 677888888887 9999999999888876 7778
Q ss_pred eEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC-eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeee
Q 016185 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLF 164 (394)
Q Consensus 86 v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~ 164 (394)
|..++|+ .|.. +|++|+.+..++|||++.. .+...+.+|.+.|..+.|.. ..+.+++.+.
T Consensus 103 vk~~af~--~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSad--------------- 163 (334)
T KOG0278|consen 103 VKAVAFS--QDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSAD--------------- 163 (334)
T ss_pred eeeEEec--ccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeecc---------------
Confidence 8889888 8888 9999999999999999865 46778899999999999998 5567777788
Q ss_pred eccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCC
Q 016185 165 IRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 244 (394)
Q Consensus 165 ~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 244 (394)
|++|++||.+++..++.+. ...+|+++.+++ ++.+|.+ ...+.|++||..+.....
T Consensus 164 ----------d~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lK-------- 219 (334)
T KOG0278|consen 164 ----------DKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLK-------- 219 (334)
T ss_pred ----------CCceEEEEeccCcEEEEEe----cCCCCcceeecc-CCCEEEE-ecCceeEEecccccccee--------
Confidence 9999999999999999997 788999999999 8885554 556889999999844211
Q ss_pred CCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccc-cCCCCCeEEEE
Q 016185 245 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIK 321 (394)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~ 321 (394)
... -+..|.+.... ...+++|+.|..++.||..+++. +..+ ++|.++|.++.
T Consensus 220 ---------------s~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE---------i~~~nkgh~gpVhcVr 274 (334)
T KOG0278|consen 220 ---------------SYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE---------IGSYNKGHFGPVHCVR 274 (334)
T ss_pred ---------------ecc-CccccccccccCCCceEEecCcceEEEEEeccCCce---------eeecccCCCCceEEEE
Confidence 111 12223333333 66899999999999999999973 4444 78999999999
Q ss_pred EeecCCcceEEEEeCCCcEEEEEecCCC
Q 016185 322 FSCDFHYNAAAIGNREGKIFVWELQSSP 349 (394)
Q Consensus 322 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (394)
|+|+| ...++|++||+|++|.+..++
T Consensus 275 FSPdG--E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 275 FSPDG--ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ECCCC--ceeeccCCCceEEEEEecCCC
Confidence 99999 689999999999999998764
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=3.2e-30 Score=231.62 Aligned_cols=295 Identities=20% Similarity=0.285 Sum_probs=227.2
Q ss_pred CccceeEEEEEeeCCCcceEEEEec--CCc-EEEEEcCCCc--------eeEEeeecccCCcccceEEEEEEEcCCCCcE
Q 016185 32 GKRPLYAVVFNFIDSRYFNVFATVG--GNR-VTVYQCLEGG--------VIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 32 h~~~v~~i~~sp~~~~~~~~las~~--~d~-i~vw~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (394)
+...|.+|..+| +|..+|||+ .|+ ++||+...-- .+...... ...|.+.|.|+.|+ +||+ +
T Consensus 12 ~~~~IfSIdv~p----dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~-m~~h~~sv~CVR~S--~dG~-~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHP----DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCT-MDDHDGSVNCVRFS--PDGS-Y 83 (942)
T ss_pred CCeeEEEEEecC----CceeEecCCccccccceeeccccccchhhhhhcccchhhee-eccccCceeEEEEC--CCCC-e
Confidence 356799999999 899999999 676 8899975311 01111111 12689999999999 9999 9
Q ss_pred EEEeecCCeEEEEECCC------------------CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeee
Q 016185 101 LVAGGINGIIRVIDVSN------------------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLL 162 (394)
Q Consensus 101 l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~ 162 (394)
||+|+.|+.|.||+... -+.+..+.+|...|.+++|+| ++.+|++++.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~------------- 149 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSL------------- 149 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecc-------------
Confidence 99999999999999762 135778889999999999999 8899999999
Q ss_pred eeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccccc
Q 016185 163 LFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 242 (394)
Q Consensus 163 ~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 242 (394)
|++|.+||..+.+.+..+. +|...|-.+.|+| -|++|++-+.|++|++|+..+........
T Consensus 150 ------------DnsViiwn~~tF~~~~vl~---~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It--- 210 (942)
T KOG0973|consen 150 ------------DNSVIIWNAKTFELLKVLR---GHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSIT--- 210 (942)
T ss_pred ------------cceEEEEccccceeeeeee---cccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeec---
Confidence 9999999999999999998 8999999999999 99999999999999999976632211110
Q ss_pred CCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeec----CCeEEEecCCCCCCCCCCCcceecccccCCCCC
Q 016185 243 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 316 (394)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
+|... ..-......+.|+ |++|++... -..+.|.+..+-+ .-..+-+|..+
T Consensus 211 -------------~pf~~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk---------~~~~LvGH~~p 267 (942)
T KOG0973|consen 211 -------------KPFEE-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK---------VDKDLVGHSAP 267 (942)
T ss_pred -------------cchhh-CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce---------eeeeeecCCCc
Confidence 01000 0112345566776 888887653 3457777665443 45677899999
Q ss_pred eEEEEEeec------C---------CcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEec
Q 016185 317 IWFIKFSCD------F---------HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC 381 (394)
Q Consensus 317 i~~~~~~~~------~---------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 381 (394)
+.+++|+|. . .+..+|+|+.|++|-||.....+| +.... .-....|.+++|+|||..|..+|
T Consensus 268 ~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP--l~vi~-~lf~~SI~DmsWspdG~~LfacS 344 (942)
T KOG0973|consen 268 VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP--LFVIH-NLFNKSIVDMSWSPDGFSLFACS 344 (942)
T ss_pred eEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc--hhhhh-hhhcCceeeeeEcCCCCeEEEEe
Confidence 999999983 1 112789999999999999866654 22222 13457899999999999999999
Q ss_pred cCCeEEEEEcCC
Q 016185 382 EDGAIWRWDAIP 393 (394)
Q Consensus 382 ~dg~i~iwd~~~ 393 (394)
.||+|.+.++++
T Consensus 345 ~DGtV~~i~Fee 356 (942)
T KOG0973|consen 345 LDGTVALIHFEE 356 (942)
T ss_pred cCCeEEEEEcch
Confidence 999999998764
No 86
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.3e-29 Score=224.06 Aligned_cols=234 Identities=18% Similarity=0.271 Sum_probs=178.2
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCeeE-------------EEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNEKLH-------------KSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
+++. .+++++.+.....|+...+..+ ..+.+|.+.|.+++|+|.++++|++++.
T Consensus 30 ~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~------------ 96 (493)
T PTZ00421 30 WDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE------------ 96 (493)
T ss_pred CCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC------------
Confidence 5555 4566666666666664332211 2467899999999999966789999999
Q ss_pred eeeeccceeeeccCCcEEEEEecCCc-------EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccce
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGI-------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 234 (394)
|++|++||+.++. .+..+. +|...|.+++|+|..+++|++++.|++|++||+.+
T Consensus 97 -------------DgtIkIWdi~~~~~~~~~~~~l~~L~---gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t--- 157 (493)
T PTZ00421 97 -------------DGTIMGWGIPEEGLTQNISDPIVHLQ---GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER--- 157 (493)
T ss_pred -------------CCEEEEEecCCCccccccCcceEEec---CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC---
Confidence 9999999997653 345555 89999999999994357899999999999999998
Q ss_pred eeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC
Q 016185 235 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV 312 (394)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 312 (394)
...+..+..|...|.+++|+ +++|++++.|+.|++||+++++ .+..+..
T Consensus 158 --------------------g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---------~v~tl~~ 208 (493)
T PTZ00421 158 --------------------GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---------IVSSVEA 208 (493)
T ss_pred --------------------CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---------EEEEEec
Confidence 33466778899999999997 8899999999999999999876 4555666
Q ss_pred CCCC-eEEEEEeecCCcceEEEEe----CCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEec-cCCeE
Q 016185 313 PECD-IWFIKFSCDFHYNAAAIGN----REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAI 386 (394)
Q Consensus 313 ~~~~-i~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i 386 (394)
|... ...+.|.+++. .+++++ .|+.|++||+++... ....... .+...+....|++++++|++++ .|+.|
T Consensus 209 H~~~~~~~~~w~~~~~--~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 209 HASAKSQRCLWAKRKD--LIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred CCCCcceEEEEcCCCC--eEEEEecCCCCCCeEEEEeCCCCCC-ceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 6543 44677888773 455433 589999999987542 2222221 2234566678999999999887 59999
Q ss_pred EEEEcCC
Q 016185 387 WRWDAIP 393 (394)
Q Consensus 387 ~iwd~~~ 393 (394)
++||+.+
T Consensus 285 riwdl~~ 291 (493)
T PTZ00421 285 RCFELMN 291 (493)
T ss_pred EEEEeeC
Confidence 9999874
No 87
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.98 E-value=5.5e-28 Score=199.91 Aligned_cols=322 Identities=15% Similarity=0.258 Sum_probs=248.1
Q ss_pred eeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEE
Q 016185 14 SLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC 93 (394)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 93 (394)
++..|.-+.-......+..++.|...+|+|. +.+++++++.+.+..|++..+...+....+..+.. .-|.+++|.
T Consensus 181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPt---d~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~- 255 (626)
T KOG2106|consen 181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPT---DPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFL- 255 (626)
T ss_pred ccchhhchhhhccCcceeccceEEEEEeccC---CCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEc-
Confidence 3444443333333344555678999999994 67899999999999999988887666555544333 667777666
Q ss_pred cCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEcee--eeEEeec--------------c
Q 016185 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--VIIISSL--------------S 157 (394)
Q Consensus 94 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--~i~~~~~--------------~ 157 (394)
++|+ +++|..+|.|.||+..+.+..+....|.+.|.+++... ++.+| +|++ .|..|+- +
T Consensus 256 -engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 256 -ENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred -CCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcC
Confidence 8897 99999999999999988888888889999999999987 65554 5776 6666763 3
Q ss_pred ceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeec
Q 016185 158 LICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE 237 (394)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 237 (394)
..-.+...++.+++|...+.|..=.++++-.+..+ +|......++.+| +.+++++++.|+.+++|+ ..
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~----gh~delwgla~hp-s~~q~~T~gqdk~v~lW~-~~------ 398 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ----GHGDELWGLATHP-SKNQLLTCGQDKHVRLWN-DH------ 398 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEE----ecccceeeEEcCC-ChhheeeccCcceEEEcc-CC------
Confidence 34444555556888888888888788777666555 5999999999999 889999999999999999 22
Q ss_pred cccccCCCCCCCCccccccceeeeecCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCC
Q 016185 238 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 316 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
++.. -..-..+..|+.|+ ...++.|...|...+.|.++.. .+..... ..+
T Consensus 399 ------------------k~~w-t~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~---------lv~~~~d-~~~ 449 (626)
T KOG2106|consen 399 ------------------KLEW-TKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD---------LVTIHTD-NEQ 449 (626)
T ss_pred ------------------ceeE-EEEecCceeEeeccCcceEEEeeccceEEEEecccce---------eEEEEec-CCc
Confidence 1111 12234566777777 2399999999999999999854 3333333 789
Q ss_pred eEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 317 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 317 i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
+++++|+|+| .+||.|+.|+.|++|.+..+.......-.+.+ ++|+.+.||+|+++|.+-+.|-.|-.|.
T Consensus 450 ls~v~ysp~G--~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 450 LSVVRYSPDG--AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred eEEEEEcCCC--CEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEc
Confidence 9999999999 79999999999999999887644444333333 8999999999999999999999999994
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.5e-29 Score=196.13 Aligned_cols=278 Identities=12% Similarity=0.191 Sum_probs=211.1
Q ss_pred cCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC-ceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCC
Q 016185 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 108 (394)
.-.+.|.+++||| ....++++++-|+ ||+|++... ...... ...|.++|.+++|+ .||. .+++|+.|+
T Consensus 25 pP~DsIS~l~FSP---~~~~~~~A~SWD~tVR~wevq~~g~~~~ka----~~~~~~PvL~v~Ws--ddgs-kVf~g~~Dk 94 (347)
T KOG0647|consen 25 PPEDSISALAFSP---QADNLLAAGSWDGTVRIWEVQNSGQLVPKA----QQSHDGPVLDVCWS--DDGS-KVFSGGCDK 94 (347)
T ss_pred CcccchheeEecc---ccCceEEecccCCceEEEEEecCCcccchh----hhccCCCeEEEEEc--cCCc-eEEeeccCC
Confidence 4578899999999 3467777888888 999999874 333221 12689999999999 8898 999999999
Q ss_pred eEEEEECCCCeeEEEEEecCCceeEEEEcCCCCc--EEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC
Q 016185 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG 186 (394)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~ 186 (394)
.+++||+.++ .+..+..|..+|..+.|-+ ... .|++||. |++|+.||.+..
T Consensus 95 ~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSW-------------------------DKTlKfWD~R~~ 147 (347)
T KOG0647|consen 95 QAKLWDLASG-QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSW-------------------------DKTLKFWDTRSS 147 (347)
T ss_pred ceEEEEccCC-CeeeeeecccceeEEEEec-CCCcceeEeccc-------------------------ccceeecccCCC
Confidence 9999999998 4567778999999999987 444 8999999 999999999999
Q ss_pred cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCC
Q 016185 187 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 266 (394)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (394)
.++..+. -.++++++..- ..+++.+..+..|.+|+++++..+.... ...-.-
T Consensus 148 ~pv~t~~----LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~---------------------~SpLk~ 199 (347)
T KOG0647|consen 148 NPVATLQ----LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRI---------------------ESPLKW 199 (347)
T ss_pred Ceeeeee----ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhh---------------------cCcccc
Confidence 9998887 67788888764 3578888899999999998843221110 011223
Q ss_pred ceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC---CCCCeEEEEEeecCCcceEEEEeCCCcEE
Q 016185 267 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIF 341 (394)
Q Consensus 267 ~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 341 (394)
.++||+.. .+..+.|+-+|++.+..+..+.+ ...-..++-+.-.. .-..|+.++|+|.. ..|++++.||++.
T Consensus 200 Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h--gtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 200 QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH--GTLVTAGSDGTFS 276 (347)
T ss_pred eeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeeccc--ceEEEecCCceEE
Confidence 45666654 56669999999999999887643 11111122221111 12357889999977 6899999999999
Q ss_pred EEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEe
Q 016185 342 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 380 (394)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 380 (394)
+||-.... .+...+ .|..+|++.+|+.+|.++|-+
T Consensus 277 FWDkdar~--kLk~s~--~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 277 FWDKDART--KLKTSE--THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred Eecchhhh--hhhccC--cCCCccceeEecCCCCEEEEE
Confidence 99987763 445555 778999999999999988854
No 89
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.98 E-value=5.7e-29 Score=205.68 Aligned_cols=333 Identities=14% Similarity=0.177 Sum_probs=248.6
Q ss_pred eeeeeccCccceeEEEEEeeCCCcceEEEEecCC---------cEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcC
Q 016185 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN---------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (394)
Q Consensus 25 ~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d---------~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (394)
.++.+-+|...|.|++.+| +--.+|+|... .+++||..+-..+..+. ..+..|.+++|+...
T Consensus 96 ~Qr~y~GH~ddikc~~vHP----dri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g-----~f~~GV~~vaFsk~~ 166 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHP----DRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIG-----FFDRGVTCVAFSKIN 166 (626)
T ss_pred hcccccCCCCceEEEeecC----CceeeccCcccccCCCcCCCeeeecccccceeeeeec-----cccccceeeeecccC
Confidence 3445678999999999999 56677765321 18999977776666665 456689999999776
Q ss_pred CCCcEEEEe--ecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEcee-eeEEeec----------------
Q 016185 96 DGIPFLVAG--GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-VIIISSL---------------- 156 (394)
Q Consensus 96 ~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-~i~~~~~---------------- 156 (394)
.|. +|+.- +.+..+.|||++.+......+..++.|....|+|.+.++++++++ .+-+|..
T Consensus 167 ~G~-~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e 245 (626)
T KOG2106|consen 167 GGS-LLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE 245 (626)
T ss_pred CCc-eEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccccc
Confidence 777 55544 456779999999988888888788889999999999999999988 7778865
Q ss_pred --cceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccce
Q 016185 157 --SLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234 (394)
Q Consensus 157 --~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 234 (394)
.++|+.+.+++++++|.++|.|.||+..+.+..+... .|.+.|.+++... +|. |++|+.|..|..|| ...+.
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~---aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd-~~y~k 319 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH---AHDGGVFSLCMLR-DGT-LLSGGKDRKIILWD-DNYRK 319 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee---ecCCceEEEEEec-Ccc-EeecCccceEEecc-ccccc
Confidence 3477778889999999999999999998887777776 7999999999997 777 56699999999999 33221
Q ss_pred eeccccccCCC------CCC------------CCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCC
Q 016185 235 YVEKSFTWTDL------PSK------------FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM 294 (394)
Q Consensus 235 ~~~~~~~~~~~------~~~------------~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~ 294 (394)
.-+.......- +.. +.......-.....+|.+..+.++.. .+.+++++.|+.+++|+-.
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~- 398 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH- 398 (626)
T ss_pred cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC-
Confidence 11111000000 000 00000011123456788888888876 6699999999999999922
Q ss_pred CCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCC
Q 016185 295 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 374 (394)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 374 (394)
+ +.--+.-..+..++.|+|.+ .+|.|+..|...+.|.++.. .+ .+. ...++++.++|+|+|
T Consensus 399 -k----------~~wt~~~~d~~~~~~fhpsg---~va~Gt~~G~w~V~d~e~~~--lv-~~~--~d~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 399 -K----------LEWTKIIEDPAECADFHPSG---VVAVGTATGRWFVLDTETQD--LV-TIH--TDNEQLSVVRYSPDG 459 (626)
T ss_pred -c----------eeEEEEecCceeEeeccCcc---eEEEeeccceEEEEecccce--eE-EEE--ecCCceEEEEEcCCC
Confidence 1 11112224567899999998 79999999999999998853 22 232 226899999999999
Q ss_pred CEEEEeccCCeEEEEEcCC
Q 016185 375 STILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 375 ~~l~s~~~dg~i~iwd~~~ 393 (394)
.+||.|+.|+.|+||-+..
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred CEEEEecCCCeEEEEEECC
Confidence 9999999999999998764
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.8e-29 Score=193.37 Aligned_cols=250 Identities=16% Similarity=0.233 Sum_probs=195.8
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
....|.++.|+ .+|. +|++++.|..+++||..+++.++++..+.-.+..++|.......+.+...
T Consensus 13 ~~~~i~sl~fs--~~G~-~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk------------ 77 (311)
T KOG1446|consen 13 TNGKINSLDFS--DDGL-LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK------------ 77 (311)
T ss_pred CCCceeEEEec--CCCC-EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC------------
Confidence 46678888877 9999 99999999999999999999999999888889999998745455544442
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccc
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 241 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 241 (394)
.|.+|+..++.+.+.++-+. ||...|++|+.+| -++.+++++.|++|++||++..+
T Consensus 78 ------------~d~tIryLsl~dNkylRYF~---GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~-------- 133 (311)
T KOG1446|consen 78 ------------EDDTIRYLSLHDNKYLRYFP---GHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKK-------- 133 (311)
T ss_pred ------------CCCceEEEEeecCceEEEcC---CCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCC--------
Confidence 28899999999999999999 9999999999999 77899999999999999999732
Q ss_pred cCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEE
Q 016185 242 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 321 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 321 (394)
+...+.....++.+....|-++|++.....|++||++.....+.. ...-........+.+.
T Consensus 134 ---------------cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~----tf~i~~~~~~ew~~l~ 194 (311)
T KOG1446|consen 134 ---------------CQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFT----TFSITDNDEAEWTDLE 194 (311)
T ss_pred ---------------CceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCce----eEccCCCCccceeeeE
Confidence 233333333444444334778888888889999999987532211 1111114467889999
Q ss_pred EeecCCcceEEEEeCCCcEEEEEecCCCceeeEEec-cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 322 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 322 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
|+|+| ++++.++..+.+++.|.-++. ....+. +.....-.....|+||++++++|+.||+|++|++++
T Consensus 195 FS~dG--K~iLlsT~~s~~~~lDAf~G~--~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 195 FSPDG--KSILLSTNASFIYLLDAFDGT--VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EcCCC--CEEEEEeCCCcEEEEEccCCc--EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 99999 688888999999999999985 444444 111112225678999999999999999999999975
No 91
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.9e-29 Score=222.86 Aligned_cols=226 Identities=19% Similarity=0.354 Sum_probs=175.2
Q ss_pred EeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEE
Q 016185 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWN 182 (394)
Q Consensus 103 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd 182 (394)
.|+.++.|++|+......+..+.+|.+.|.+++|+|+++.+|++|+. |+.|++||
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~-------------------------DgtIrIWD 103 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE-------------------------DLTIRVWE 103 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC-------------------------CCeEEEEE
Confidence 36778999999988888888999999999999999966789999999 99999999
Q ss_pred ecCCc--------EEEEeeccCCCcccEEEEEecCCCCe-eEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccc
Q 016185 183 VQTGI--------CILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 253 (394)
Q Consensus 183 ~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (394)
+.++. .+..+. +|...|.+++|+| ++. +|++++.|+.|++||+++++
T Consensus 104 i~t~~~~~~~i~~p~~~L~---gH~~~V~sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~-------------------- 159 (568)
T PTZ00420 104 IPHNDESVKEIKDPQCILK---GHKKKISIIDWNP-MNYYIMCSSGFDSFVNIWDIENEK-------------------- 159 (568)
T ss_pred CCCCCccccccccceEEee---cCCCcEEEEEECC-CCCeEEEEEeCCCeEEEEECCCCc--------------------
Confidence 97642 223444 7999999999999 654 56799999999999999833
Q ss_pred cccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE-----EEeecC
Q 016185 254 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI-----KFSCDF 326 (394)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~ 326 (394)
.+..+. |...|.+++|+ |++|++++.|+.|++||+++++ .+..+.+|...+... .|++++
T Consensus 160 ---~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~---------~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 160 ---RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE---------IASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred ---EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc---------EEEEEecccCCceeEEEEeeeEcCCC
Confidence 233333 56789999997 8899999999999999999876 556677777654333 344666
Q ss_pred CcceEEEEeCCC----cEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 327 HYNAAAIGNREG----KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 327 ~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
.++++++.|+ .|+|||++... ..+..+....+.+.+......+++.++++|+.|+.|++|++..
T Consensus 227 --~~IlTtG~d~~~~R~VkLWDlr~~~-~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 227 --NYILSTGFSKNNMREMKLWDLKNTT-SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred --CEEEEEEcCCCCccEEEEEECCCCC-CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 5788777664 79999999632 2333333324445554444556689999999999999999854
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=6.6e-30 Score=194.14 Aligned_cols=240 Identities=20% Similarity=0.350 Sum_probs=201.6
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEE--EEecCCceeEEEEcCCCCcEEEEceeeeEEeeccc
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSL 158 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~ 158 (394)
.|...+.+++|. .+|. .|++|+.|+++.+|+++..+.... .++|.+.|..++|+|..+.++++++.
T Consensus 18 ~~~~~v~Sv~wn--~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~--------- 85 (313)
T KOG1407|consen 18 GHVQKVHSVAWN--CDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG--------- 85 (313)
T ss_pred hhhhcceEEEEc--ccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---------
Confidence 677889999999 8899 999999999999999987755443 45899999999999988999999999
Q ss_pred eeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecc
Q 016185 159 ICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 238 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 238 (394)
|.+|++||++.+++...+. ....=.-+.|+| ++.+++.++.|..|.+.|.++.+..
T Consensus 86 ----------------dk~ir~wd~r~~k~~~~i~----~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~--- 141 (313)
T KOG1407|consen 86 ----------------DKTIRIWDIRSGKCTARIE----TKGENINITWSP-DGEYIAVGNKDDRITFIDARTYKIV--- 141 (313)
T ss_pred ----------------CceEEEEEeccCcEEEEee----ccCcceEEEEcC-CCCEEEEecCcccEEEEEeccccee---
Confidence 9999999999999999887 344445689999 9999999999999999999994421
Q ss_pred ccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCC
Q 016185 239 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 316 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
.-......+.-+.|+ +++++.....|.|.|......+ ++..++.|...
T Consensus 142 ---------------------~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk---------pv~si~AH~sn 191 (313)
T KOG1407|consen 142 ---------------------NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK---------PVQSIKAHPSN 191 (313)
T ss_pred ---------------------ehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc---------cccccccCCcc
Confidence 111223345555665 7777777888999999988666 78899999999
Q ss_pred eEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 317 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 317 i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
..|+.|+|+| +++|+|+.|-.+.+||+..- .+++.+. -+.-+|..+.||.||++||+||+|..|-|=+++
T Consensus 192 CicI~f~p~G--ryfA~GsADAlvSLWD~~EL--iC~R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 192 CICIEFDPDG--RYFATGSADALVSLWDVDEL--ICERCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred eEEEEECCCC--ceEeeccccceeeccChhHh--hhheeec--cccCceEEEEeccCcceeeccCccceEEeEecc
Confidence 9999999999 79999999999999999876 5666666 666899999999999999999999988665444
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.6e-31 Score=223.75 Aligned_cols=288 Identities=18% Similarity=0.316 Sum_probs=233.0
Q ss_pred cCcccee---EEEEEeeCCCcceEEEEecCCc-EEEEEcCCCce------eEEeeecccCCcccceEEEEEEEcCCCCcE
Q 016185 31 EGKRPLY---AVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV------IAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 31 ~h~~~v~---~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (394)
.|...|. .+..++ ..+++|.+||.|+ |++|+...... +..++ .|.+-|+.+..+ .+|+ .
T Consensus 19 qn~~~v~~~~~Lq~da---~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-----~HsDWVNDiiL~--~~~~-t 87 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDA---PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-----HHSDWVNDIILC--GNGK-T 87 (735)
T ss_pred hccccccchhhccccC---CCCceEEecCCCceEEEeccccccCCcccchhhhhh-----hhHhHHhhHHhh--cCCC-c
Confidence 3555566 455554 3678999999999 99999864332 33344 788888888888 7788 8
Q ss_pred EEEeecCCeEEEEECCCC--eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcE
Q 016185 101 LVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESV 178 (394)
Q Consensus 101 l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (394)
|++++.|-+|++|+...+ -+..++..|.+.|.|++.-..+..++|+|+. |+.|
T Consensus 88 lIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGL-------------------------D~~I 142 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGL-------------------------DRKI 142 (735)
T ss_pred eEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCC-------------------------CccE
Confidence 999999999999999876 5778889999999999994448889999999 9999
Q ss_pred EEEEecCCc--EEEEeec-----c-CCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCC
Q 016185 179 RLWNVQTGI--CILIFAG-----A-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 250 (394)
Q Consensus 179 ~vwd~~~~~--~~~~~~~-----~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 250 (394)
.+||++++. .+..+.. + .++...|++++.++ .+..|++|+..+-+++||.++
T Consensus 143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt------------------- 202 (735)
T KOG0308|consen 143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT------------------- 202 (735)
T ss_pred EEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEecccc-------------------
Confidence 999999872 3332221 1 27889999999999 899999999999999999999
Q ss_pred ccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCc
Q 016185 251 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 328 (394)
Q Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 328 (394)
...+..+.+|...|.++..+ |..+++++.||+|++||+...+ ++.++..|...++++..+|+-
T Consensus 203 ----~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr---------Cl~T~~vH~e~VWaL~~~~sf-- 267 (735)
T KOG0308|consen 203 ----CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR---------CLATYIVHKEGVWALQSSPSF-- 267 (735)
T ss_pred ----ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc---------eeeeEEeccCceEEEeeCCCc--
Confidence 44578888999999999997 8899999999999999999776 788899999999999999888
Q ss_pred ceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 329 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
..+++|+.||.|..=|+++.. .....++ ...+|..+..+...+-+-+++.|+.|+-|.+..
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~-~~tlick---~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPA-KSTLICK---EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceEEecCCCCcEEecccCCch-hheEeec---CCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 689999999999999998852 2222222 225677777775544446677888999887653
No 94
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-29 Score=194.56 Aligned_cols=241 Identities=17% Similarity=0.291 Sum_probs=193.6
Q ss_pred ecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCC--cEEEEceeeeEE
Q 016185 76 SYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP--SLVVSASKVIII 153 (394)
Q Consensus 76 ~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~~i~~ 153 (394)
.|..+.|.++|++++.+ +. ++++|+.|-+|+|||+...+.+..+..|.+.|+++.|.+ .. ..|++|+.
T Consensus 36 lF~~~aH~~sitavAVs----~~-~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sd---- 105 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS----GP-YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSD---- 105 (362)
T ss_pred cccccccccceeEEEec----ce-eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecC----
Confidence 44445899999999876 76 999999999999999999999999999999999999997 43 37888888
Q ss_pred eeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccc
Q 016185 154 SSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 233 (394)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 233 (394)
||.|.+|+......+..++ +|.+.|+.++.+| .+++.++.+.|+.+++||+-.++
T Consensus 106 ---------------------DG~i~iw~~~~W~~~~slK---~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 106 ---------------------DGHIIIWRVGSWELLKSLK---AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ---------------------CCcEEEEEcCCeEEeeeec---ccccccceeEecC-CCceEEEEcCCceeeeehhhcCc
Confidence 9999999999999999998 8999999999999 99999999999999999999865
Q ss_pred eeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceeccccc
Q 016185 234 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 311 (394)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 311 (394)
... +..+ .+. -..+.|+ |++++.+..+ .|-+|.+.+.. ......
T Consensus 161 ~a~---------------------v~~L-~~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~---------v~~~i~ 206 (362)
T KOG0294|consen 161 VAF---------------------VLNL-KNK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS---------VFREIE 206 (362)
T ss_pred cce---------------------eecc-CCc--ceeeEEcCCCCEEEEEecc-EEEEEecccHh---------Hhhhhh
Confidence 311 1111 111 2237776 7878776654 68899988764 233322
Q ss_pred CCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEe--ccCCCEEEEeccCCeEEEE
Q 016185 312 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM--SYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iw 389 (394)
.. ..+.++.|-.. ..|++|..|+.|.+||..+. .....+. +|..+|.++.+ .|++.+|+++|.||.|+||
T Consensus 207 ~~-~r~l~~~~l~~---~~L~vG~d~~~i~~~D~ds~--~~~~~~~--AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vW 278 (362)
T KOG0294|consen 207 NP-KRILCATFLDG---SELLVGGDNEWISLKDTDSD--TPLTEFL--AHENRVKDIASYTNPEHEYLVTASSDGFIKVW 278 (362)
T ss_pred cc-ccceeeeecCC---ceEEEecCCceEEEeccCCC--ccceeee--cchhheeeeEEEecCCceEEEEeccCceEEEE
Confidence 22 34555665544 48999999999999999885 4566666 89999999985 3678899999999999999
Q ss_pred EcCC
Q 016185 390 DAIP 393 (394)
Q Consensus 390 d~~~ 393 (394)
|++.
T Consensus 279 d~~~ 282 (362)
T KOG0294|consen 279 DIDM 282 (362)
T ss_pred Eccc
Confidence 9864
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.8e-30 Score=209.88 Aligned_cols=247 Identities=21% Similarity=0.283 Sum_probs=207.3
Q ss_pred eeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEE
Q 016185 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (394)
Q Consensus 25 ~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 103 (394)
..+.+...++.|+++.|-. ||++||+|...+ |+|||..+...++.++ .|+.++..+.|+ |.+...+++
T Consensus 60 ~~k~~srFk~~v~s~~fR~----DG~LlaaGD~sG~V~vfD~k~r~iLR~~~-----ah~apv~~~~f~--~~d~t~l~s 128 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRS----DGRLLAAGDESGHVKVFDMKSRVILRQLY-----AHQAPVHVTKFS--PQDNTMLVS 128 (487)
T ss_pred hhhhHHhhccceeEEEeec----CCeEEEccCCcCcEEEeccccHHHHHHHh-----hccCceeEEEec--ccCCeEEEe
Confidence 3344445568899999997 899999999988 9999976655666666 788899999988 777669999
Q ss_pred eecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEe
Q 016185 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNV 183 (394)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~ 183 (394)
|+.|+.+++||+.+......+.+|++.|.|.+|+|..+.+++||+. ||.|++||.
T Consensus 129 ~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY-------------------------Dg~vrl~Dt 183 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY-------------------------DGKVRLWDT 183 (487)
T ss_pred cCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC-------------------------CceEEEEEe
Confidence 9999999999999988777899999999999999988889999999 999999999
Q ss_pred cCC-cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeee
Q 016185 184 QTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 262 (394)
Q Consensus 184 ~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (394)
+.. ..+.++. |..+|..+.+-| .+.++++++. ..|++||+.++.+ .+....
T Consensus 184 R~~~~~v~eln----hg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~q----------------------ll~~~~ 235 (487)
T KOG0310|consen 184 RSLTSRVVELN----HGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQ----------------------LLTSMF 235 (487)
T ss_pred ccCCceeEEec----CCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCce----------------------ehhhhh
Confidence 987 6777775 999999999999 8898998875 5799999997432 233444
Q ss_pred cCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcE
Q 016185 263 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 340 (394)
Q Consensus 263 ~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 340 (394)
.|...|+|+.+. +..|++++-|+.+++||+.+.+ .+..+.. .++|.+++.+|++ ..++.|..+|.+
T Consensus 236 ~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K---------vv~s~~~-~~pvLsiavs~dd--~t~viGmsnGlv 303 (487)
T KOG0310|consen 236 NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK---------VVHSWKY-PGPVLSIAVSPDD--QTVVIGMSNGLV 303 (487)
T ss_pred cccceEEEEEeecCCceEeecccccceEEEEccceE---------EEEeeec-ccceeeEEecCCC--ceEEEeccccee
Confidence 599999999997 6899999999999999977654 4444443 4689999999999 589999999988
Q ss_pred EEEEecC
Q 016185 341 FVWELQS 347 (394)
Q Consensus 341 ~iwd~~~ 347 (394)
.+-+...
T Consensus 304 ~~rr~~~ 310 (487)
T KOG0310|consen 304 SIRRREV 310 (487)
T ss_pred eeehhhc
Confidence 8775543
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=203.98 Aligned_cols=243 Identities=23% Similarity=0.404 Sum_probs=205.9
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEE--------EecCCceeEEEEcCCCCcEEEEceeeeEEe
Q 016185 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF--------VGHGDSINEIRTQPLKPSLVVSASKVIIIS 154 (394)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~ 154 (394)
+.-+.|..|+ |||+ +|++|+.||.|.+||..+|+..+.+ --+..+|.|+.|+. +...+++|+.
T Consensus 213 KSh~EcA~FS--PDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsq----- 283 (508)
T KOG0275|consen 213 KSHVECARFS--PDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQ----- 283 (508)
T ss_pred ccchhheeeC--CCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCc-----
Confidence 3445556666 9999 9999999999999999998765543 35788999999999 8899999999
Q ss_pred eccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccce
Q 016185 155 SLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234 (394)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 234 (394)
||.|++|.+++|++++.|.. +|...|+|+.|+. |+..+++++.|.++++.-+.+
T Consensus 284 --------------------DGkIKvWri~tG~ClRrFdr--AHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKS--- 337 (508)
T KOG0275|consen 284 --------------------DGKIKVWRIETGQCLRRFDR--AHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKS--- 337 (508)
T ss_pred --------------------CCcEEEEEEecchHHHHhhh--hhccCeeEEEEcc-CcchhhcccccceEEEecccc---
Confidence 99999999999999999874 7999999999999 999999999999999999999
Q ss_pred eeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC
Q 016185 235 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV 312 (394)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 312 (394)
++.+..+.+|...|....|. |..+++++.||+|++|+..+.+ ++.+++.
T Consensus 338 --------------------GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte---------C~~Tfk~ 388 (508)
T KOG0275|consen 338 --------------------GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE---------CLSTFKP 388 (508)
T ss_pred --------------------chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh---------hhhhccC
Confidence 44677889999999999997 8899999999999999999887 5555554
Q ss_pred --CCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEecc-CCccCCeeEEEeccCCCEEEEeccCCeEEEE
Q 016185 313 --PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH-AQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 313 --~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 389 (394)
...+|+.+..-|... ..++++...++|+|-++... .++.+.. .-..+...+.+.||.|.++.+.++|+.++.|
T Consensus 389 ~~~d~~vnsv~~~PKnp-eh~iVCNrsntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 389 LGTDYPVNSVILLPKNP-EHFIVCNRSNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred CCCcccceeEEEcCCCC-ceEEEEcCCCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence 456788888888775 68888899999999998764 5666662 2223456678899999999999999999999
Q ss_pred EcCC
Q 016185 390 DAIP 393 (394)
Q Consensus 390 d~~~ 393 (394)
.+.+
T Consensus 465 ~~~s 468 (508)
T KOG0275|consen 465 SVLS 468 (508)
T ss_pred Eeec
Confidence 8753
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5e-29 Score=193.22 Aligned_cols=244 Identities=18% Similarity=0.292 Sum_probs=191.8
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC-CeeE-EEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccc
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSL 158 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~ 158 (394)
..++.|.+++|+ |....++++++.||+||+|+++. +..+ +....|.++|.+++|+. ++..+++|+-
T Consensus 25 pP~DsIS~l~FS--P~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~--------- 92 (347)
T KOG0647|consen 25 PPEDSISALAFS--PQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGC--------- 92 (347)
T ss_pred CcccchheeEec--cccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeecc---------
Confidence 567889999998 64443788999999999999986 3333 34457899999999999 7788888888
Q ss_pred eeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCe--eEEeeccCCcEEEEEccccceee
Q 016185 159 ICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIWSMKEFWTYV 236 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 236 (394)
|+.+++||+.+++..+.- .|..+|.++.|-+ ... .|+||+.|.+|+.||.+.
T Consensus 93 ----------------Dk~~k~wDL~S~Q~~~v~----~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~----- 146 (347)
T KOG0647|consen 93 ----------------DKQAKLWDLASGQVSQVA----AHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRS----- 146 (347)
T ss_pred ----------------CCceEEEEccCCCeeeee----ecccceeEEEEec-CCCcceeEecccccceeecccCC-----
Confidence 999999999999665554 5999999999987 544 899999999999999998
Q ss_pred ccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceeccccc-CCCC
Q 016185 237 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP-VPEC 315 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~ 315 (394)
..++..+.. ++.+.++..-..+++.+..++.|.+|+++++.. ..++.. .-.-
T Consensus 147 ------------------~~pv~t~~L-PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~t--------e~k~~~SpLk~ 199 (347)
T KOG0647|consen 147 ------------------SNPVATLQL-PERVYAADVLYPMAVVATAERHIAVYNLENPPT--------EFKRIESPLKW 199 (347)
T ss_pred ------------------CCeeeeeec-cceeeehhccCceeEEEecCCcEEEEEcCCCcc--------hhhhhcCcccc
Confidence 445655554 556777776688999999999999999987632 111111 1234
Q ss_pred CeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEec-cCC---c---cCCeeEEEeccCCCEEEEeccCCeEEE
Q 016185 316 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQ---S---KSPIRQTAMSYDGSTILSCCEDGAIWR 388 (394)
Q Consensus 316 ~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~---~---~~~v~~~~~s~~~~~l~s~~~dg~i~i 388 (394)
.+.+++..++.+ ..+.|+-+|.+.|..+..+.+..-..++ |.. - --.|++++|+|....|+++|.||++.+
T Consensus 200 Q~R~va~f~d~~--~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F 277 (347)
T KOG0647|consen 200 QTRCVACFQDKD--GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSF 277 (347)
T ss_pred eeeEEEEEecCC--ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEE
Confidence 688999999985 5699999999999999886444444554 211 1 135788999999999999999999999
Q ss_pred EEc
Q 016185 389 WDA 391 (394)
Q Consensus 389 wd~ 391 (394)
||-
T Consensus 278 WDk 280 (347)
T KOG0647|consen 278 WDK 280 (347)
T ss_pred ecc
Confidence 994
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=7.4e-29 Score=192.92 Aligned_cols=270 Identities=16% Similarity=0.253 Sum_probs=202.6
Q ss_pred CccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeE
Q 016185 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (394)
Q Consensus 32 h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 110 (394)
..+.|.+|.|+| .++.|+.++-|+ +++|+....+....++ |+.++.+++|. ++. .+++|+.||.|
T Consensus 12 P~d~IS~v~f~~----~~~~LLvssWDgslrlYdv~~~~l~~~~~------~~~plL~c~F~--d~~--~~~~G~~dg~v 77 (323)
T KOG1036|consen 12 PEDGISSVKFSP----SSSDLLVSSWDGSLRLYDVPANSLKLKFK------HGAPLLDCAFA--DES--TIVTGGLDGQV 77 (323)
T ss_pred ChhceeeEEEcC----cCCcEEEEeccCcEEEEeccchhhhhhee------cCCceeeeecc--CCc--eEEEeccCceE
Confidence 367899999998 344444445666 9999998876555554 78899999987 544 69999999999
Q ss_pred EEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEE
Q 016185 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICIL 190 (394)
Q Consensus 111 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~ 190 (394)
+.+|+.++.. ..+..|..+|.|+.+++ ....+++|+. |++|++||.+......
T Consensus 78 r~~Dln~~~~-~~igth~~~i~ci~~~~-~~~~vIsgsW-------------------------D~~ik~wD~R~~~~~~ 130 (323)
T KOG1036|consen 78 RRYDLNTGNE-DQIGTHDEGIRCIEYSY-EVGCVISGSW-------------------------DKTIKFWDPRNKVVVG 130 (323)
T ss_pred EEEEecCCcc-eeeccCCCceEEEEeec-cCCeEEEccc-------------------------CccEEEEecccccccc
Confidence 9999987754 44556999999999998 7789999999 9999999998765555
Q ss_pred EeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEE
Q 016185 191 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 270 (394)
Q Consensus 191 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 270 (394)
.+. ....|.++... ++.|++|+.|..+.+||+++...... ..-..-.-.++|
T Consensus 131 ~~d----~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q---------------------~reS~lkyqtR~ 182 (323)
T KOG1036|consen 131 TFD----QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQ---------------------RRESSLKYQTRC 182 (323)
T ss_pred ccc----cCceEEEEecc---CCEEEEeecCceEEEEEcccccchhh---------------------hccccceeEEEE
Confidence 554 45688888774 56799999999999999999543210 011112344666
Q ss_pred EEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCC---------CCCeEEEEEeecCCcceEEEEeCCCc
Q 016185 271 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP---------ECDIWFIKFSCDFHYNAAAIGNREGK 339 (394)
Q Consensus 271 ~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~l~~~~~dg~ 339 (394)
++.- +.-.+.++-||+|.+=.++..+.... .-..|+.| -.+|++++|+|-. ..|+||+.||.
T Consensus 183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s-----kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~--~tfaTgGsDG~ 255 (323)
T KOG1036|consen 183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS-----KKYAFKCHRLSEKDTEIIYPVNAIAFHPIH--GTFATGGSDGI 255 (323)
T ss_pred EEEecCCCceEEEeecceEEEEccCCchHHhh-----hceeEEeeecccCCceEEEEeceeEecccc--ceEEecCCCce
Confidence 6665 56777889999998866655421110 11122222 1379999999996 58999999999
Q ss_pred EEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEec
Q 016185 340 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC 381 (394)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 381 (394)
|.+||+.+.+ .+..+. .....|..++|+.+|..||+++
T Consensus 256 V~~Wd~~~rK--rl~q~~--~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 256 VNIWDLFNRK--RLKQLA--KYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred EEEccCcchh--hhhhcc--CCCCceEEEEeccCCCeEEEEe
Confidence 9999998874 455555 4457899999999999999886
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.5e-29 Score=205.47 Aligned_cols=244 Identities=22% Similarity=0.285 Sum_probs=208.6
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeE----EE-------------E-EecCCceeEEEEcCCCCc
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH----KS-------------F-VGHGDSINEIRTQPLKPS 142 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~~~ 142 (394)
.|.-++.+++++ |+++ ++++++.+|+|.-|++.+++.. .+ - +.|...+.+++.++ ++.
T Consensus 140 ~H~~s~~~vals--~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dgk 215 (479)
T KOG0299|consen 140 KHQLSVTSVALS--PDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DGK 215 (479)
T ss_pred cccCcceEEEee--cccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CCc
Confidence 577788888887 9999 9999999999999999877532 11 1 26888899999999 889
Q ss_pred EEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC
Q 016185 143 LVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 222 (394)
Q Consensus 143 ~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg 222 (394)
+|++|+. |..|.||+.++.+.++.+. +|.+.|.+++|-. ..+.+++++.|+
T Consensus 216 ylatgg~-------------------------d~~v~Iw~~~t~ehv~~~~---ghr~~V~~L~fr~-gt~~lys~s~Dr 266 (479)
T KOG0299|consen 216 YLATGGR-------------------------DRHVQIWDCDTLEHVKVFK---GHRGAVSSLAFRK-GTSELYSASADR 266 (479)
T ss_pred EEEecCC-------------------------CceEEEecCcccchhhccc---ccccceeeeeeec-CccceeeeecCC
Confidence 9999999 9999999999999999988 8999999999998 778899999999
Q ss_pred cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCC
Q 016185 223 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG 300 (394)
Q Consensus 223 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~ 300 (394)
+|++|++.. ..-+.++.+|++.|.+|... ++.+-+|+.|+++++|++....
T Consensus 267 svkvw~~~~-----------------------~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---- 319 (479)
T KOG0299|consen 267 SVKVWSIDQ-----------------------LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---- 319 (479)
T ss_pred ceEEEehhH-----------------------hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc----
Confidence 999999998 33467889999999999886 6666677799999999995442
Q ss_pred CCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccC--------CeeEEEecc
Q 016185 301 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS--------PIRQTAMSY 372 (394)
Q Consensus 301 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~v~~~~~s~ 372 (394)
-..+.++...+-|++|-.+. .+++|+.+|.|.+|++.+.++.......|..... .|++++..|
T Consensus 320 ------qlifrg~~~sidcv~~In~~---HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~ 390 (479)
T KOG0299|consen 320 ------QLIFRGGEGSIDCVAFINDE---HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP 390 (479)
T ss_pred ------eeeeeCCCCCeeeEEEeccc---ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc
Confidence 33466778889999999886 6999999999999999999877776666433222 799999999
Q ss_pred CCCEEEEeccCCeEEEEEcCC
Q 016185 373 DGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 373 ~~~~l~s~~~dg~i~iwd~~~ 393 (394)
...++|+|+.+|.|++|.+.+
T Consensus 391 ~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 391 GSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred cCceEEecCCCCceEEEEecC
Confidence 999999999999999999865
No 100
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=8.8e-28 Score=185.85 Aligned_cols=309 Identities=16% Similarity=0.287 Sum_probs=231.1
Q ss_pred ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc----------eeEEeeecccCCcccceEEEEEEEcCCCC
Q 016185 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----------VIAALQSYVDEDKEESFYTVSWACNVDGI 98 (394)
Q Consensus 30 ~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (394)
+.|.+.|+++...|. .|+++++|+.|+ |.|||+.... .+..+....+..|+-.|..+.|-+.-.|
T Consensus 40 r~HgGsvNsL~id~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG- 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG- 115 (397)
T ss_pred ccCCCccceeeeccc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-
Confidence 569999999999984 689999999999 9999997533 1222333345578899999999954344
Q ss_pred cEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCC--CcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 99 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
++.+++.|.+++|||..+.+....|+ ..+.|++-+++|-. ..++++|.. +-
T Consensus 116 -mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr-------------------------~~ 168 (397)
T KOG4283|consen 116 -MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTR-------------------------DV 168 (397)
T ss_pred -eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecC-------------------------CC
Confidence 79999999999999999988887777 55778988888843 357778888 99
Q ss_pred cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccc
Q 016185 177 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256 (394)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (394)
.|++.|+.+|...+.+. +|.+.|.++.|+|...-.|++|+.||.|++||++.-..-...- .... ....
T Consensus 169 ~VrLCDi~SGs~sH~Ls---GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~l---D~hn------~k~~ 236 (397)
T KOG4283|consen 169 QVRLCDIASGSFSHTLS---GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVL---DQHN------TKRP 236 (397)
T ss_pred cEEEEeccCCcceeeec---cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEe---eccc------CccC
Confidence 99999999999999999 9999999999999667788999999999999999831100000 0000 0111
Q ss_pred c-eeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEE
Q 016185 257 P-VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 333 (394)
Q Consensus 257 ~-~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 333 (394)
| +..-..|.+.+..++|. +.++++++.|.++++|+..+++..... ..+.......+. .+. +. +.+. ..++-
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~-~g~~~~n~~~~~-~~~-~~-~~~s--~vfv~ 310 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLRE-FGPIIHNQTTSF-AVH-IQ-SMDS--DVFVL 310 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccc-cccccccccccc-eEE-Ee-eccc--ceEEE
Confidence 2 23466799999999997 889999999999999999988642111 111111111111 111 22 2222 34555
Q ss_pred EeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 334 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
--.++.+.++++-.++ .+..+. .|...|.+.++-|+-+.+.++..|+.|..|-.
T Consensus 311 ~p~~~~lall~~~sgs--~ir~l~--~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 311 FPNDGSLALLNLLEGS--FVRRLS--THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EecCCeEEEEEccCce--EEEeee--cccceeeEEeecCchhhhhccccCCccccccc
Confidence 5566899999998884 677777 77788999999999999999999999999964
No 101
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.9e-28 Score=185.86 Aligned_cols=237 Identities=14% Similarity=0.218 Sum_probs=205.7
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
+|+.+++-+.+. .+|. +|++++.|.+..||-..+|+.+.++.+|.+.|+|+..+. +...+++|+.
T Consensus 8 GHERplTqiKyN--~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSA----------- 72 (327)
T KOG0643|consen 8 GHERPLTQIKYN--REGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSA----------- 72 (327)
T ss_pred cCccccceEEec--CCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-Ccceeeeccc-----------
Confidence 799999999887 8999 999999999999999889999999999999999999988 7799999999
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeecc-----CCcEEEEEcccccee
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTY 235 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~ 235 (394)
|.++++||+++|+.+..++ ...+|..+.|++ ++++++.+.. .+.|.++|++....
T Consensus 73 --------------D~t~kLWDv~tGk~la~~k----~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~- 132 (327)
T KOG0643|consen 73 --------------DQTAKLWDVETGKQLATWK----TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSS- 132 (327)
T ss_pred --------------cceeEEEEcCCCcEEEEee----cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChh-
Confidence 9999999999999999998 788999999999 8887776643 47899999996321
Q ss_pred eccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCC
Q 016185 236 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 313 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
......|...+..+...++.+-|. +++|++|..||.|..||++++++ .+.....|
T Consensus 133 ---------------~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--------~v~s~~~h 189 (327)
T KOG0643|consen 133 ---------------DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--------LVDSDEEH 189 (327)
T ss_pred ---------------hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--------eeechhhh
Confidence 111245788888889999999998 99999999999999999999864 66777888
Q ss_pred CCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEecc
Q 016185 314 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE 382 (394)
Q Consensus 314 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 382 (394)
...|+.++++++. .++++++.|.+-++||+.+-+ .++++.. ..||++.+++|-...++.|+.
T Consensus 190 ~~~Ind~q~s~d~--T~FiT~s~Dttakl~D~~tl~--v~Kty~t---e~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 190 SSKINDLQFSRDR--TYFITGSKDTTAKLVDVRTLE--VLKTYTT---ERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred ccccccccccCCc--ceEEecccCccceeeecccee--eEEEeee---cccccceecccccceEEecCC
Confidence 8899999999999 799999999999999999874 4555542 378999999998777766653
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.7e-28 Score=197.25 Aligned_cols=265 Identities=15% Similarity=0.231 Sum_probs=215.5
Q ss_pred eecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcc
Q 016185 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE 83 (394)
Q Consensus 5 a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~ 83 (394)
..|..+....+++ .+.-.....|+||+..|+.+.|+| +...+++++.|. |+||............ .|+
T Consensus 235 lTGG~d~~av~~d--~~s~q~l~~~~Gh~kki~~v~~~~----~~~~v~~aSad~~i~vws~~~~s~~~~~~-----~h~ 303 (506)
T KOG0289|consen 235 LTGGEDKTAVLFD--KPSNQILATLKGHTKKITSVKFHK----DLDTVITASADEIIRVWSVPLSSEPTSSR-----PHE 303 (506)
T ss_pred eecCCCCceEEEe--cchhhhhhhccCcceEEEEEEecc----chhheeecCCcceEEeeccccccCccccc-----ccc
Confidence 3455554444443 233345667899999999999999 688899999998 9999987766544554 689
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec--CCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
++|+.+... |.|. |+++++.||...+.|++++..+...... .-.+++.+|+| |+.+|.+|..
T Consensus 304 ~~V~~ls~h--~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~------------ 367 (506)
T KOG0289|consen 304 EPVTGLSLH--PTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTP------------ 367 (506)
T ss_pred ccceeeeec--cCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCC------------
Confidence 999998877 8899 9999999999999999999887776642 23588999999 8899999999
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccc
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 241 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 241 (394)
|+.|++||+.++.....|. +|+++|..++|+. +|.+|++++.|+.|++||+|..+.
T Consensus 368 -------------d~~vkiwdlks~~~~a~Fp---ght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n------- 423 (506)
T KOG0289|consen 368 -------------DGVVKIWDLKSQTNVAKFP---GHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKN------- 423 (506)
T ss_pred -------------CceEEEEEcCCccccccCC---CCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcc-------
Confidence 9999999999999888888 8999999999998 999999999999999999999442
Q ss_pred cCCCCCCCCccccccceeeeecC-CCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeE
Q 016185 242 WTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 318 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 318 (394)
..++... ...+.++.|+ |.+++.++.|=+|++++-.+.+ -..+..+..|.+..+
T Consensus 424 ----------------~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~-------W~~~~~~~~~sg~st 480 (506)
T KOG0289|consen 424 ----------------FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS-------WTEIKELADHSGLST 480 (506)
T ss_pred ----------------cceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc-------ceeeehhhhcccccc
Confidence 2222221 2268888887 9999999888778777755543 225667777778889
Q ss_pred EEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 319 FIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
.+.|.... .++++++.|..++++.+
T Consensus 481 ~v~Fg~~a--q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 481 GVRFGEHA--QYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeecccc--eEEeeccchhheEEeec
Confidence 99999988 69999999999888754
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-28 Score=209.65 Aligned_cols=243 Identities=18% Similarity=0.256 Sum_probs=208.2
Q ss_pred ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCC
Q 016185 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (394)
Q Consensus 30 ~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 108 (394)
.-+...|+++.|++ +|.+||.|..++ |.|||..+.+.+..+.. .|...|-+++|. +. .+.+|+.|+
T Consensus 214 ~~~~~~vtSv~ws~----~G~~LavG~~~g~v~iwD~~~~k~~~~~~~----~h~~rvg~laW~----~~-~lssGsr~~ 280 (484)
T KOG0305|consen 214 SFGEELVTSVKWSP----DGSHLAVGTSDGTVQIWDVKEQKKTRTLRG----SHASRVGSLAWN----SS-VLSSGSRDG 280 (484)
T ss_pred ecCCCceEEEEECC----CCCEEEEeecCCeEEEEehhhccccccccC----CcCceeEEEecc----Cc-eEEEecCCC
Confidence 33488999999999 899999999999 99999998888888773 288899999997 33 899999999
Q ss_pred eEEEEECCCCeeEEE-EEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 109 IIRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 109 ~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
.|..+|+...+.... +.+|...|..++|++ ++.++++|+. |+.+.|||....+
T Consensus 281 ~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgn-------------------------DN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 281 KILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGN-------------------------DNVVFIWDGLSPE 334 (484)
T ss_pred cEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCC-------------------------ccceEeccCCCcc
Confidence 999999987765444 889999999999999 8899999999 9999999998778
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEEeec--cCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
+...+. .|...|.+++|+|....+||+|+ .|+.|++||..++. .+.. ....
T Consensus 335 p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-----------------------~i~~-vdtg 387 (484)
T KOG0305|consen 335 PKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-----------------------RIDS-VDTG 387 (484)
T ss_pred ccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-----------------------Eecc-cccC
Confidence 888887 79999999999998888999975 69999999999843 2222 2346
Q ss_pred CceEEEEEe--CcEEEEee--cCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEE
Q 016185 266 NYVDCNRWL--GDFILSKS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 341 (394)
Q Consensus 266 ~~i~~~~~~--~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 341 (394)
..|.++.|+ .+-++++. .++.|.||+..+.+ .+..+.+|...|..++++|++ ..+++|+.|.+++
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~---------~~~~l~gH~~RVl~la~SPdg--~~i~t~a~DETlr 456 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK---------LVAELLGHTSRVLYLALSPDG--ETIVTGAADETLR 456 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc---------eeeeecCCcceeEEEEECCCC--CEEEEecccCcEE
Confidence 789999998 33344433 47789999999866 688899999999999999999 6899999999999
Q ss_pred EEEecCCC
Q 016185 342 VWELQSSP 349 (394)
Q Consensus 342 iwd~~~~~ 349 (394)
+|++-...
T Consensus 457 fw~~f~~~ 464 (484)
T KOG0305|consen 457 FWNLFDER 464 (484)
T ss_pred eccccCCC
Confidence 99998754
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.2e-29 Score=187.10 Aligned_cols=254 Identities=17% Similarity=0.248 Sum_probs=200.0
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC---eeEEEEEecCCceeEEEE-cCCCCcEEEEceeeeEEeec
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRT-QPLKPSLVVSASKVIIISSL 156 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~~i~~~~~ 156 (394)
.|++.|..+... --|+ .|+|++.|++|+|+.++.. +.+.++.+|.++|..++| +|.-+.+|++++.
T Consensus 9 ~H~D~IHda~lD--yygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY------- 78 (299)
T KOG1332|consen 9 QHEDMIHDAQLD--YYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY------- 78 (299)
T ss_pred hhhhhhhHhhhh--hhcc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeec-------
Confidence 577777777766 4488 9999999999999998754 568899999999999999 4667899999999
Q ss_pred cceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCC-CCeeEEeeccCCcEEEEEcccccee
Q 016185 157 SLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTY 235 (394)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~ 235 (394)
||.|.||.-++++-.+... ...|...|++++|.|+ -+-.|++++.||.|.+.+.+....
T Consensus 79 ------------------DgkVIiWke~~g~w~k~~e-~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~- 138 (299)
T KOG1332|consen 79 ------------------DGKVIIWKEENGRWTKAYE-HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG- 138 (299)
T ss_pred ------------------CceEEEEecCCCchhhhhh-hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-
Confidence 9999999988775332221 2279999999999993 356789999999999999988310
Q ss_pred eccccccCCCCCCCCccccccceeeeecCCCceEEEEEe-----C-----------cEEEEeecCCeEEEecCCCCCCCC
Q 016185 236 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----G-----------DFILSKSVDNEIVLWEPKMKEQSP 299 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~-----------~~l~~~~~dg~i~~~d~~~~~~~~ 299 (394)
.........|+-.|.+++|. | +.|++|+.|..|+||+..+.+-
T Consensus 139 -------------------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w-- 197 (299)
T KOG1332|consen 139 -------------------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW-- 197 (299)
T ss_pred -------------------ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch--
Confidence 11233456788888888885 2 4699999999999999988632
Q ss_pred CCCcceecccccCCCCCeEEEEEeecCC--cceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEE
Q 016185 300 GEGTADILQKYPVPECDIWFIKFSCDFH--YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI 377 (394)
Q Consensus 300 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 377 (394)
..-..+..|...|..++|+|.-. ..++|+++.||++.||...........++.+ .....+..+.||+.|+.|
T Consensus 198 -----~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~L 271 (299)
T KOG1332|consen 198 -----KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNIL 271 (299)
T ss_pred -----hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccc-cCCcceEEEEEeccccEE
Confidence 13445889999999999999752 2589999999999999887431111111111 344789999999999999
Q ss_pred EEeccCCeEEEEEc
Q 016185 378 LSCCEDGAIWRWDA 391 (394)
Q Consensus 378 ~s~~~dg~i~iwd~ 391 (394)
+.++.|+.|.+|.-
T Consensus 272 aVs~GdNkvtlwke 285 (299)
T KOG1332|consen 272 AVSGGDNKVTLWKE 285 (299)
T ss_pred EEecCCcEEEEEEe
Confidence 99999999999964
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=5.6e-29 Score=205.73 Aligned_cols=281 Identities=16% Similarity=0.261 Sum_probs=226.2
Q ss_pred cCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCc---eeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG---VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
.|..-|.+++.|. ..+.+.||+.+.|+|||+.... ++..+... ..+.-|.++.+. |||+ .|++|++-
T Consensus 417 ~HGEvVcAvtIS~----~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl---~rdnyiRSckL~--pdgr-tLivGGea 486 (705)
T KOG0639|consen 417 AHGEVVCAVTISN----PTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCL---NRDNYIRSCKLL--PDGR-TLIVGGEA 486 (705)
T ss_pred ccCcEEEEEEecC----CcceeEecCCCeEEEeeccCCCCCCcccccccc---CcccceeeeEec--CCCc-eEEecccc
Confidence 5888899999986 5789999999999999987543 22333322 245567777777 9999 99999999
Q ss_pred CeEEEEECCCCee--EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC
Q 016185 108 GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT 185 (394)
Q Consensus 108 g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~ 185 (394)
.++.|||+....+ ...+.......++++.+| +.++.+++.. ||.|.|||+.+
T Consensus 487 stlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccs-------------------------dGnI~vwDLhn 540 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCS-------------------------DGNIAVWDLHN 540 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeecc-------------------------CCcEEEEEccc
Confidence 9999999986543 334444445678899999 7777777777 99999999999
Q ss_pred CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 186 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 186 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
...++.|+ +|++.+.||.+++ +|..|.+|+.|.+||-||++.+++..+. ...
T Consensus 541 q~~Vrqfq---GhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqh------------------------dF~ 592 (705)
T KOG0639|consen 541 QTLVRQFQ---GHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQH------------------------DFS 592 (705)
T ss_pred ceeeeccc---CCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhh------------------------hhh
Confidence 99999999 9999999999999 9999999999999999999995432211 123
Q ss_pred CceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEE
Q 016185 266 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 343 (394)
Q Consensus 266 ~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iw 343 (394)
..|.++.++ +++++.|-.++.+.|......+ ...+..|++-|.++.|++-| .++++.+.|+.+-.|
T Consensus 593 SQIfSLg~cP~~dWlavGMens~vevlh~skp~----------kyqlhlheScVLSlKFa~cG--kwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE----------KYQLHLHESCVLSLKFAYCG--KWFVSTGKDNLLNAW 660 (705)
T ss_pred hhheecccCCCccceeeecccCcEEEEecCCcc----------ceeecccccEEEEEEecccC--ceeeecCchhhhhhc
Confidence 456777666 8899999999999998877654 24455678889999999999 699999999999999
Q ss_pred EecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 344 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
...-+. .+...+ -.++|+++.+|.|.+++++|+.|..-.||.+.
T Consensus 661 rtPyGa--siFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 661 RTPYGA--SIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred cCcccc--ceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 988774 344433 23789999999999999999999999888763
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.9e-28 Score=188.78 Aligned_cols=300 Identities=18% Similarity=0.202 Sum_probs=214.0
Q ss_pred eeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCcee--EEeeecccCCcccceEEEEEEEcCCCCcEEEE
Q 016185 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI--AALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (394)
Q Consensus 27 ~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 103 (394)
..|++|.+.|++++|+. +|+.||+++.|+ |+||+++..... +.++... .-+--+.+.|+ ||.+.++++
T Consensus 80 ~~LKgH~~~vt~~~FsS----dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv---e~dhpT~V~Fa--pDc~s~vv~ 150 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS----DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV---EYDHPTRVVFA--PDCKSVVVS 150 (420)
T ss_pred hhhhccCCceeeeEEcC----CCceeEEEeCCceEEEEecchhhhhhhhHhhccc---cCCCceEEEEC--CCcceEEEE
Confidence 45689999999999998 899999999999 999998864321 1111111 11223445666 988877888
Q ss_pred eecCCeEEEEECCCC---eeEEE--------E-EecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceee
Q 016185 104 GGINGIIRVIDVSNE---KLHKS--------F-VGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLR 171 (394)
Q Consensus 104 ~~~dg~i~vwd~~~~---~~~~~--------~-~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~ 171 (394)
......+++|.+... ..... + +.|+-.+..+-... ++.++++++.
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~---------------------- 207 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASL---------------------- 207 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecC----------------------
Confidence 888889999986432 11111 1 13445555565555 7788999998
Q ss_pred eccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCc
Q 016185 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 251 (394)
Q Consensus 172 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 251 (394)
|..|.+|+++ |+.+..+. .....-+..+.+| +|+++++++..--|++|.+--.+.- .
T Consensus 208 ---dt~i~lw~lk-Gq~L~~id---tnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG---------------~ 264 (420)
T KOG2096|consen 208 ---DTKICLWDLK-GQLLQSID---TNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDG---------------T 264 (420)
T ss_pred ---CCcEEEEecC-Cceeeeec---cccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCc---------------c
Confidence 9999999998 89888887 5666677889999 9999999999999999998553210 0
Q ss_pred cccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceeccccc----CCCCCeEEEEEeec
Q 016185 252 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP----VPECDIWFIKFSCD 325 (394)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~ 325 (394)
......+..+.+|...|.+.+|+ ...+++.+.||++++||.+-.-... +....++..+ .....-..+.++|+
T Consensus 265 fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~--qDpk~Lk~g~~pl~aag~~p~RL~lsP~ 342 (420)
T KOG2096|consen 265 FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG--QDPKILKEGSAPLHAAGSEPVRLELSPS 342 (420)
T ss_pred hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC--CCchHhhcCCcchhhcCCCceEEEeCCC
Confidence 11133467889999999999998 6799999999999999987542111 1112233322 12233348999999
Q ss_pred CCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 326 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 326 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
++ .||.+. ...+++|..++++. ...++ ..|...|.+++|+++|+++++++ |..+++..
T Consensus 343 g~--~lA~s~-gs~l~~~~se~g~~--~~~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 343 GD--SLAVSF-GSDLKVFASEDGKD--YPELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred Cc--EEEeec-CCceEEEEcccCcc--chhHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 94 555444 46799999988742 22332 36778999999999999999997 66777764
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-29 Score=217.60 Aligned_cols=288 Identities=18% Similarity=0.311 Sum_probs=227.2
Q ss_pred cceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeec--ccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSY--VDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
...++|+.++ +-.-++.++..-+.||.+........+... ..+.....+..+.|. .-+.+ +||+++.+|.|.
T Consensus 40 ~~~nAIs~nr----~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~N-lIAT~s~nG~i~ 113 (839)
T KOG0269|consen 40 AKANAISVNR----DINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSN-LIATCSTNGVIS 113 (839)
T ss_pred cccceEeecC----CcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhh-hheeecCCCcEE
Confidence 4566777777 567788888777888887654432222111 011122344557787 33444 999999999999
Q ss_pred EEECCC---CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE
Q 016185 112 VIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC 188 (394)
Q Consensus 112 vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 188 (394)
+||+.. .+.+..|..|+..++++.|++...++|++|+. ||.|++||++..+.
T Consensus 114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ-------------------------Dg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ-------------------------DGTVKCWDLRSKKS 168 (839)
T ss_pred EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCC-------------------------CceEEEEeeecccc
Confidence 999986 56667888999999999999989999999999 99999999999998
Q ss_pred EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCce
Q 016185 189 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 268 (394)
Q Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 268 (394)
..++. +....|..+.|+|..++.|+++...|.+.+||+|.. ..+...+..|.++|
T Consensus 169 ~~t~~---~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp----------------------~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 169 KSTFR---SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP----------------------DRCEKKLTAHNGPV 223 (839)
T ss_pred ccccc---ccchhhhceeeccCCCceEEEecCCceEEEeeccCc----------------------hhHHHHhhcccCce
Confidence 88888 688999999999988999999999999999999994 34567788999999
Q ss_pred EEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEe--CCCcEEEEE
Q 016185 269 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWE 344 (394)
Q Consensus 269 ~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg~i~iwd 344 (394)
.|+.|+ +.+|++|+.|+.|+|||..+.+... +..+ ....++.+++|-|..+ ..||+++ .|-.|+|||
T Consensus 224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~-------~~tI-nTiapv~rVkWRP~~~-~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 224 LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP-------KHTI-NTIAPVGRVKWRPARS-YHLATCSMVVDTSVHVWD 294 (839)
T ss_pred EEEeecCCCceeeecCCCccEEEEeccCCCccc-------eeEE-eecceeeeeeeccCcc-chhhhhhccccceEEEEe
Confidence 999998 6699999999999999998765311 1111 1235799999999987 4777766 478899999
Q ss_pred ecCCCceeeEEeccCCccCCeeEEEecc-CCCEEEEeccCCeEEEE
Q 016185 345 LQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWRW 389 (394)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw 389 (394)
++..- .+...+. .|...++.++|.. |...|.+++.||.|..-
T Consensus 295 vrRPY-IP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 295 VRRPY-IPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred ecccc-ccceeee--ccCccccceeccCCCceeeEeecCccHHHHh
Confidence 98763 4455666 8889999999975 55688999999987543
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.9e-29 Score=187.24 Aligned_cols=252 Identities=21% Similarity=0.329 Sum_probs=198.7
Q ss_pred ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCce---eEEeeecccCCcccceEEEEEEEcCCCCcEEEEee
Q 016185 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV---IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (394)
Q Consensus 30 ~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 105 (394)
..|.+-|..+...- .|..|||++.|+ |+|+......+ +.++. +|.++|..++|....-|. +||+++
T Consensus 8 t~H~D~IHda~lDy----ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-----Gh~GPVwqv~wahPk~G~-iLAScs 77 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDY----YGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-----GHSGPVWKVAWAHPKFGT-ILASCS 77 (299)
T ss_pred hhhhhhhhHhhhhh----hcceeeeecCCccEEEEEEcCCCCceeeeEec-----CCCCCeeEEeecccccCc-EeeEee
Confidence 57999999888776 799999999999 99999987654 44455 899999999998544677 999999
Q ss_pred cCCeEEEEECCCCee--EEEEEecCCceeEEEEcCCC-CcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEE
Q 016185 106 INGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLK-PSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWN 182 (394)
Q Consensus 106 ~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd 182 (394)
.||.|.||.-++++- ......|...|++++|.|.+ +-+|++++. ||.|.|.+
T Consensus 78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS-------------------------DG~vsvl~ 132 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS-------------------------DGKVSVLT 132 (299)
T ss_pred cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC-------------------------CCcEEEEE
Confidence 999999999877743 34556899999999999954 456778888 99999999
Q ss_pred ecCC-c--EEEEeeccCCCcccEEEEEecCCC--C-----------eeEEeeccCCcEEEEEccccceeeccccccCCCC
Q 016185 183 VQTG-I--CILIFAGAGGHRNEVLSVDFHPSD--I-----------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP 246 (394)
Q Consensus 183 ~~~~-~--~~~~~~~~~~~~~~i~~~~~~~~~--~-----------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 246 (394)
.+.. . ..+... .|.-.|++++|.|.. + +.|++|+.|..|+||+.....
T Consensus 133 ~~~~g~w~t~ki~~---aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~------------- 196 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVF---AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS------------- 196 (299)
T ss_pred EcCCCCccchhhhh---ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------------
Confidence 8765 1 122223 799999999999821 2 569999999999999998842
Q ss_pred CCCCccccccceeeeecCCCceEEEEEe------CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE
Q 016185 247 SKFPTKYVQFPVFIASVHSNYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 320 (394)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (394)
-..-..+.+|.+.|+.++|. ..+|++++.||++.||..+.... + ....++.. ....++.+
T Consensus 197 --------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e-~--wk~tll~~---f~~~~w~v 262 (299)
T KOG1332|consen 197 --------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE-P--WKKTLLEE---FPDVVWRV 262 (299)
T ss_pred --------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-c--cccccccc---CCcceEEE
Confidence 11233588999999999997 33899999999999998873311 1 11123333 34579999
Q ss_pred EEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 321 KFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
.|++.+ ++|+.++.|+.|.+|.-...
T Consensus 263 SWS~sG--n~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 263 SWSLSG--NILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEeccc--cEEEEecCCcEEEEEEeCCC
Confidence 999999 79999999999999976543
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.2e-28 Score=199.40 Aligned_cols=276 Identities=18% Similarity=0.283 Sum_probs=212.9
Q ss_pred EEEEecCCc--EEEEEcCCCceeEEeeec-ccCCcccceEEEEEEEcCCCCcEEEEe-ecCCeEEEEECCCCeeEEEEEe
Q 016185 51 VFATVGGNR--VTVYQCLEGGVIAALQSY-VDEDKEESFYTVSWACNVDGIPFLVAG-GINGIIRVIDVSNEKLHKSFVG 126 (394)
Q Consensus 51 ~las~~~d~--i~vw~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~ 126 (394)
++.+++.|. +.+||+.+|...-++++- ....+ .+.. -.+. +++++ .....|.+|.+..........-
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~-----sl~~---l~~~-yllsaq~~rp~l~vw~i~k~~~~~q~~v 79 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAA-----SLTA---LNNE-YLLSAQLKRPLLHVWEILKKDQVVQYIV 79 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccch-----hhhh---hchh-heeeecccCccccccccCchhhhhhhcc
Confidence 344445554 899999999887777632 11111 1111 1234 55554 4556899999876554443334
Q ss_pred cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEE
Q 016185 127 HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 206 (394)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 206 (394)
-.++|.+++-+| .+.+|+.|+. .|.|++|.+.+|..+..+. +|-..|+|+.
T Consensus 80 ~Pg~v~al~s~n-~G~~l~ag~i-------------------------~g~lYlWelssG~LL~v~~---aHYQ~ITcL~ 130 (476)
T KOG0646|consen 80 LPGPVHALASSN-LGYFLLAGTI-------------------------SGNLYLWELSSGILLNVLS---AHYQSITCLK 130 (476)
T ss_pred cccceeeeecCC-CceEEEeecc-------------------------cCcEEEEEeccccHHHHHH---hhccceeEEE
Confidence 567899999999 8888888878 9999999999999999887 8999999999
Q ss_pred ecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe-C---cEEEEee
Q 016185 207 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-G---DFILSKS 282 (394)
Q Consensus 207 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~---~~l~~~~ 282 (394)
|+- |+.+|++|+.||.|.+|++...-.... .....|+..+..|.-+|+.+... | .++++++
T Consensus 131 fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~--------------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 131 FSD-DGSHIITGSKDGAVLVWLLTDLVSADN--------------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred EeC-CCcEEEecCCCccEEEEEEEeeccccc--------------CCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence 998 999999999999999999977321110 11356889999999999999987 3 4999999
Q ss_pred cCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCC-------------
Q 016185 283 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP------------- 349 (394)
Q Consensus 283 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------- 349 (394)
.|.++++||+..+. .+.++.. ...+.+++..|.. ..+++|+.+|.|.+.++..-.
T Consensus 196 ~D~t~k~wdlS~g~---------LLlti~f-p~si~av~lDpae--~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGV---------LLLTITF-PSSIKAVALDPAE--RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred CCceEEEEEeccce---------eeEEEec-CCcceeEEEcccc--cEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 99999999999886 4444433 3468999999999 799999999999998886532
Q ss_pred -ceeeEEeccCCccC--CeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 350 -PVLIARLSHAQSKS--PIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 350 -~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
...+..+. +|.+ .|++++.+-||.+|++|+.||.|+|||+..
T Consensus 264 ~~t~~~~~~--Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 264 ENTQINVLV--GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ccceeeeec--cccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 11223333 7777 999999999999999999999999999853
No 110
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=8.9e-28 Score=205.81 Aligned_cols=347 Identities=16% Similarity=0.188 Sum_probs=252.8
Q ss_pred eeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCcee-----------
Q 016185 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI----------- 71 (394)
Q Consensus 4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~----------- 71 (394)
.|.|.......++......|.....++||.+.|.+++|.... .+.-+||+++.|. |+||.+.-+...
T Consensus 162 la~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~-~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~ 240 (764)
T KOG1063|consen 162 LACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLG-GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT 240 (764)
T ss_pred EEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccC-CCcEEEEecCCceEEEEEEEEecCCcccccccccccc
Confidence 567777888888877778899999999999999999999733 2457899999999 999998643311
Q ss_pred ----------EEee-----ecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCe--eEEE-----EEecCC
Q 016185 72 ----------AALQ-----SYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKS-----FVGHGD 129 (394)
Q Consensus 72 ----------~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~-----~~~~~~ 129 (394)
..++ .-...+|++-|+++.|. |.+. .|++++.|.++.+|...+.. -+.. +.+...
T Consensus 241 ~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~--p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~ 317 (764)
T KOG1063|consen 241 LSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH--PEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAG 317 (764)
T ss_pred ccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc--cchh-hheecccCcceEEEecCCccceEEEEEEeeccccccc
Confidence 1111 00123799999999999 8897 89999999999999976542 2222 223345
Q ss_pred ceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecC
Q 016185 130 SINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 209 (394)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 209 (394)
.....-|+| +++.+++-+. .|..++|.......-.......+|.+.|.+++|+|
T Consensus 318 GF~g~lw~~-n~~~ii~~g~-------------------------~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p 371 (764)
T KOG1063|consen 318 GFWGGLWSP-NSNVIIAHGR-------------------------TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP 371 (764)
T ss_pred ceeeEEEcC-CCCEEEEecc-------------------------cCcEEEEeccCccceeeccccccccccceeeeecC
Confidence 678899999 7788888888 99999998333222112222348999999999999
Q ss_pred CCCeeEEeeccCCcEEEEEcccccee-------------------ec--------------ccc----------------
Q 016185 210 SDIYRIASCGMDNTVKIWSMKEFWTY-------------------VE--------------KSF---------------- 240 (394)
Q Consensus 210 ~~~~~l~s~~~dg~v~iwd~~~~~~~-------------------~~--------------~~~---------------- 240 (394)
.|.+|++.+.|-+-|+|-.-..+.. .. +.+
T Consensus 372 -sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~ 450 (764)
T KOG1063|consen 372 -SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGK 450 (764)
T ss_pred -CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCc
Confidence 9999999999988888754410000 00 000
Q ss_pred ccCC--------------CCC--CCC---------------------c-------------cccccceeeeecCCCceEE
Q 016185 241 TWTD--------------LPS--KFP---------------------T-------------KYVQFPVFIASVHSNYVDC 270 (394)
Q Consensus 241 ~~~~--------------~~~--~~~---------------------~-------------~~~~~~~~~~~~~~~~i~~ 270 (394)
.... .+. .++ . ...-..+..+.+|...|.+
T Consensus 451 ~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~ 530 (764)
T KOG1063|consen 451 CFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYA 530 (764)
T ss_pred cccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEE
Confidence 0000 000 000 0 0000123466789999999
Q ss_pred EEEe--CcEEEEeecCC-----eEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEE
Q 016185 271 NRWL--GDFILSKSVDN-----EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 343 (394)
Q Consensus 271 ~~~~--~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iw 343 (394)
++.+ ++++++++... .|++|+..+-. ..+.+..|.-.|+.++|+||+ ++|++.+.|.++.+|
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~---------~~~~L~~HsLTVT~l~FSpdg--~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWL---------QVQELEGHSLTVTRLAFSPDG--RYLLSVSRDRTVSLY 599 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchh---------hhheecccceEEEEEEECCCC--cEEEEeecCceEEee
Confidence 9998 88999988643 59999988765 466789999999999999999 799999999999999
Q ss_pred EecCCCceeeEEec-cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 344 ELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 344 d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
....... ....+. ...|..-|.++.|+|++.++||+|.|.+|+||....
T Consensus 600 ~~~~~~~-~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 600 EVQEDIK-DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred eeecccc-hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 9865431 222222 448989999999999999999999999999998754
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=213.96 Aligned_cols=240 Identities=22% Similarity=0.350 Sum_probs=201.9
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCe------eEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccc
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNEK------LHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSN 168 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~ 168 (394)
|.++ +|++|+.||.|++|++.... ...+++.|...|+++.... +++.|+++|.
T Consensus 35 ~~~r-yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~Ss------------------- 93 (735)
T KOG0308|consen 35 PNGR-YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASS------------------- 93 (735)
T ss_pred CCCc-eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecC-------------------
Confidence 4565 99999999999999986432 3677889999999999887 7778999999
Q ss_pred eeeeccCCcEEEEEecCC--cEEEEeeccCCCcccEEEEEe-cCCCCeeEEeeccCCcEEEEEccccceeeccccccCCC
Q 016185 169 CLRVGQDESVRLWNVQTG--ICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 245 (394)
Q Consensus 169 ~~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 245 (394)
|-+|++|+...+ -+...+. .|...|.|+++ .+ +..++++|+.|+.|.+||+.++......++.
T Consensus 94 ------DtTVK~W~~~~~~~~c~stir---~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n---- 159 (735)
T KOG0308|consen 94 ------DTTVKVWNAHKDNTFCMSTIR---THKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFN---- 159 (735)
T ss_pred ------CceEEEeecccCcchhHhhhh---cccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhcc----
Confidence 999999999877 4556666 79999999999 55 8899999999999999999985321111111
Q ss_pred CCCCCccccccceeeee-cCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEE
Q 016185 246 PSKFPTKYVQFPVFIAS-VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 322 (394)
Q Consensus 246 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (394)
..+...+. ++...|.+++.. |..+++|+..+.|++||.++.+ .+.++++|...|..+..
T Consensus 160 ---------~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~---------kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 160 ---------NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK---------KIMKLRGHTDNVRVLLV 221 (735)
T ss_pred ---------ccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc---------ceeeeeccccceEEEEE
Confidence 11222233 788899999997 6699999999999999999887 57788899999999999
Q ss_pred eecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 323 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+++| ..+++++.||+|++||+... +++.++. .|...|.++..+|+-..+.+|+.||.|+.=|+++
T Consensus 222 ~dDG--t~~ls~sSDgtIrlWdLgqQ--rCl~T~~--vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 222 NDDG--TRLLSASSDGTIRLWDLGQQ--RCLATYI--VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred cCCC--CeEeecCCCceEEeeecccc--ceeeeEE--eccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 9999 78999999999999999876 5677777 7888899999999999999999999999988875
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=6.9e-28 Score=187.57 Aligned_cols=244 Identities=17% Similarity=0.251 Sum_probs=191.2
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
..++.|..+.|+ |.+. .|++++.||.+++||+........++ |..++.+++|.+ ...+++|+-
T Consensus 11 pP~d~IS~v~f~--~~~~-~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~----------- 73 (323)
T KOG1036|consen 11 PPEDGISSVKFS--PSSS-DLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGL----------- 73 (323)
T ss_pred CChhceeeEEEc--CcCC-cEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEecc-----------
Confidence 457789999988 7777 78888899999999998886666666 889999999986 467888888
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
||.|+.+|+.+++....- .|..+|.|+...+ ....+++|+.|++|++||.+..
T Consensus 74 --------------dg~vr~~Dln~~~~~~ig----th~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~-------- 126 (323)
T KOG1036|consen 74 --------------DGQVRRYDLNTGNEDQIG----THDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNK-------- 126 (323)
T ss_pred --------------CceEEEEEecCCcceeec----cCCCceEEEEeec-cCCeEEEcccCccEEEEecccc--------
Confidence 999999999988876655 4999999999999 7778999999999999999971
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 320 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (394)
....... ....|.++...++.|+.|+.|..+.+||+++..... ..+-..-+..+.++
T Consensus 127 ---------------~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 127 ---------------VVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCV 183 (323)
T ss_pred ---------------ccccccc-cCceEEEEeccCCEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEE
Confidence 1222222 234899999999999999999999999999876421 12223334578999
Q ss_pred EEeecCCcceEEEEeCCCcEEEEEecCCCce--eeEEec-cC------CccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 321 KFSCDFHYNAAAIGNREGKIFVWELQSSPPV--LIARLS-HA------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~-~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
++-|++. =+++++-||.|.+=.++..+.. ....++ |. .---+|++|+|+|-...||||+.||.|.+||+
T Consensus 184 ~~~pn~e--Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 184 ALVPNGE--GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred EEecCCC--ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 9999774 4888999999987666554211 112222 11 11247999999999999999999999999998
Q ss_pred CC
Q 016185 392 IP 393 (394)
Q Consensus 392 ~~ 393 (394)
.+
T Consensus 262 ~~ 263 (323)
T KOG1036|consen 262 FN 263 (323)
T ss_pred cc
Confidence 64
No 113
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.4e-29 Score=204.22 Aligned_cols=244 Identities=20% Similarity=0.309 Sum_probs=199.2
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCe--eEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccc
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSL 158 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~ 158 (394)
.|.+.+..+.|- ++.. .|++|+.|..|++|++...+ .+.++.+..++|+++.|.+ ++..+++++.
T Consensus 173 ~h~gev~~v~~l--~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~--------- 239 (459)
T KOG0288|consen 173 AHEGEVHDVEFL--RNSD-TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASN--------- 239 (459)
T ss_pred ccccccceeEEc--cCcc-hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecC---------
Confidence 688889999998 6655 89999999999999987665 6778888889999999999 6667777777
Q ss_pred eeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecc
Q 016185 159 ICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 238 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 238 (394)
|+.+++|++...+...++. +|++.|+++.|.. ....+++|+.|.+|++||+....
T Consensus 240 ----------------d~~~r~Wnvd~~r~~~TLs---GHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~----- 294 (459)
T KOG0288|consen 240 ----------------DKNLRLWNVDSLRLRHTLS---GHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAY----- 294 (459)
T ss_pred ----------------CCceeeeeccchhhhhhhc---ccccceeeehhhc-cccceeeccccchhhhhhhhhhh-----
Confidence 9999999999999999998 8999999999997 65669999999999999999822
Q ss_pred ccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeE
Q 016185 239 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 318 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 318 (394)
+..... ....+..|...+..++++..|++|++||.++.. +....+.+. .|+
T Consensus 295 ------------------C~kt~l-~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~---------~~~sv~~gg-~vt 345 (459)
T KOG0288|consen 295 ------------------CSKTVL-PGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD---------KTRSVPLGG-RVT 345 (459)
T ss_pred ------------------eecccc-ccccccceEecceeeeecccccceEEEeccCCc---------eeeEeecCc-cee
Confidence 222111 223344455557788999999999999999876 455555554 899
Q ss_pred EEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 319 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
++..++++ ..+.+.+.|.++.+.|+++.+......-.........+.+.|||++.|+|+||.||.|+||++.+
T Consensus 346 Sl~ls~~g--~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 346 SLDLSMDG--LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred eEeeccCC--eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence 99999999 67888899999999999998644443333223334589999999999999999999999999875
No 114
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=4.9e-28 Score=205.57 Aligned_cols=298 Identities=18% Similarity=0.247 Sum_probs=212.8
Q ss_pred eEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCcee-EEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 016185 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (394)
Q Consensus 37 ~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd 114 (394)
.+..|++.+ ....+||.+.+++ |.++|....... +..+-.....|...|..+.|. | |+..|++++.|.++++||
T Consensus 53 f~~sFs~~~-n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa--p-ge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 53 FADSFSAAP-NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA--P-GESLLVSASGDSTIRPWD 128 (720)
T ss_pred ccccccCCC-CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccC--C-CceeEEEccCCceeeeee
Confidence 347788743 3578999999998 999997654322 111111223799999999999 7 666999999999999999
Q ss_pred CCCCeeEEE--EEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE----
Q 016185 115 VSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC---- 188 (394)
Q Consensus 115 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~---- 188 (394)
+++.+++.. +.+|...|.+++|.|.+...|++|+. ||.|.|||++....
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR-------------------------Dg~illWD~R~n~~d~~e 183 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGR-------------------------DGEILLWDCRCNGVDALE 183 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccC-------------------------CCcEEEEEEeccchhhHH
Confidence 999988776 88999999999999999999999999 99999999973320
Q ss_pred ----------------E----EEeeccCCCcccEEE---EEecCCCCeeEEeecc-CCcEEEEEccccceeeccccccCC
Q 016185 189 ----------------I----LIFAGAGGHRNEVLS---VDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTD 244 (394)
Q Consensus 189 ----------------~----~~~~~~~~~~~~i~~---~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~ 244 (394)
. +.+.....+...|.+ +.+.. |...|++++. |+.|++||++......+
T Consensus 184 ~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r------- 255 (720)
T KOG0321|consen 184 EFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYR------- 255 (720)
T ss_pred HHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccc-------
Confidence 0 000001133344444 44444 7888998887 99999999999543222
Q ss_pred CCCCCCcccccccee--eeecC---CCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCC-
Q 016185 245 LPSKFPTKYVQFPVF--IASVH---SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD- 316 (394)
Q Consensus 245 ~~~~~~~~~~~~~~~--~~~~~---~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~- 316 (394)
+.+.. .+..| .-.+.++..+ |.++++.+.|+.|++|++.+.... ++..+.++...
T Consensus 256 ----------~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s-------P~~~~sg~~~~s 318 (720)
T KOG0321|consen 256 ----------QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS-------PVAEFSGKLNSS 318 (720)
T ss_pred ----------cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-------chhhccCcccce
Confidence 11222 22222 2235556555 788888888999999999977532 23333332211
Q ss_pred -eEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCC-CEEEEeccCCeEEEEEcCC
Q 016185 317 -IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 317 -i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~ 393 (394)
-..-..+|++ .++++|+.|...++|.+...+. ....+. +|.-.|++++|.|.. .-++++++|-.++||++.+
T Consensus 319 f~vks~lSpd~--~~l~SgSsd~~ayiw~vs~~e~-~~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 319 FYVKSELSPDD--CSLLSGSSDEQAYIWVVSSPEA-PPALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred eeeeeecCCCC--ceEeccCCCcceeeeeecCccC-Chhhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 1223467888 6899999999999999998753 334444 899999999999853 4577779999999999854
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.8e-27 Score=200.76 Aligned_cols=296 Identities=15% Similarity=0.183 Sum_probs=222.8
Q ss_pred cccccc--eeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcC
Q 016185 19 KKREYR--VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (394)
Q Consensus 19 ~~~~~~--~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (394)
..++|. ....++||++.|.||...| .|.+||+|++|+ |+||.+.+|.++..++ ..+.|.+++|++.+
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp----~G~wlasGsdDGtvriWEi~TgRcvr~~~------~d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDP----SGEWLASGSDDGTVRIWEIATGRCVRTVQ------FDSEIRSVAWNPLS 453 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecC----CcceeeecCCCCcEEEEEeecceEEEEEe------ecceeEEEEecCCC
Confidence 334444 3445689999999999999 799999999999 9999999999999987 56689999999555
Q ss_pred CCCcEEEEeecCCeEEEEECCCC-------------------------------------eeEEEEEecCCceeEEEEcC
Q 016185 96 DGIPFLVAGGINGIIRVIDVSNE-------------------------------------KLHKSFVGHGDSINEIRTQP 138 (394)
Q Consensus 96 ~~~~~l~s~~~dg~i~vwd~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~ 138 (394)
+-. +||++- ...+.|-+..-| +-++..-.|...|..+.|+.
T Consensus 454 ~~~-vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 454 DLC-VLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred Cce-eEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 444 444443 333444442111 00122335777888899988
Q ss_pred CCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEee
Q 016185 139 LKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 218 (394)
Q Consensus 139 ~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~ 218 (394)
.+.+|++... .+....|.|+++........|+ ...+.|.++.|+| ...+|+++
T Consensus 532 -kGDYlatV~~----------------------~~~~~~VliHQLSK~~sQ~PF~---kskG~vq~v~FHP-s~p~lfVa 584 (733)
T KOG0650|consen 532 -KGDYLATVMP----------------------DSGNKSVLIHQLSKRKSQSPFR---KSKGLVQRVKFHP-SKPYLFVA 584 (733)
T ss_pred -CCceEEEecc----------------------CCCcceEEEEecccccccCchh---hcCCceeEEEecC-CCceEEEE
Confidence 7777776543 1124679999998777666665 4677899999999 76777776
Q ss_pred ccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCC
Q 016185 219 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 296 (394)
Q Consensus 219 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~ 296 (394)
+. ..|++||+.. +..+..+......|..++.+ |+.++.++.|+.+..||+.-..
T Consensus 585 Tq-~~vRiYdL~k-----------------------qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 585 TQ-RSVRIYDLSK-----------------------QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred ec-cceEEEehhH-----------------------HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 64 6799999988 23344444445566666665 8999999999999999998664
Q ss_pred CCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEec-------CCCceeeEEeccCCccCC----e
Q 016185 297 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-------SSPPVLIARLSHAQSKSP----I 365 (394)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~----v 365 (394)
. ..+++..|...++.++|++.- .++++|+.||++.||.-. +.-...+..+. +|... |
T Consensus 641 k--------Pyk~lr~H~~avr~Va~H~ry--PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~--gH~~~~~~gV 708 (733)
T KOG0650|consen 641 K--------PYKTLRLHEKAVRSVAFHKRY--PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR--GHEKTNDLGV 708 (733)
T ss_pred c--------hhHHhhhhhhhhhhhhhcccc--ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc--Cceeecccce
Confidence 3 678888999999999999988 799999999999988643 22223455555 77655 8
Q ss_pred eEEEeccCCCEEEEeccCCeEEEE
Q 016185 366 RQTAMSYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 366 ~~~~~s~~~~~l~s~~~dg~i~iw 389 (394)
..+.|+|...+|.+++.||+|++|
T Consensus 709 Ld~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 709 LDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeecccCCCceEEecCCCceEEee
Confidence 999999999999999999999998
No 116
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.5e-27 Score=183.11 Aligned_cols=298 Identities=15% Similarity=0.168 Sum_probs=216.6
Q ss_pred ceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEE
Q 016185 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (394)
Q Consensus 24 ~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (394)
++..+|+. .. -.|+.|++ .|.+||.|+.|| |.|||+.+...-+.+. .|..+|.+++|+ ++|+ .|+
T Consensus 16 el~~tld~-~~-a~~~~Fs~----~G~~lAvGc~nG~vvI~D~~T~~iar~ls-----aH~~pi~sl~WS--~dgr-~Ll 81 (405)
T KOG1273|consen 16 ELTHTLDN-PL-AECCQFSR----WGDYLAVGCANGRVVIYDFDTFRIARMLS-----AHVRPITSLCWS--RDGR-KLL 81 (405)
T ss_pred hhceeccC-Cc-cceEEecc----CcceeeeeccCCcEEEEEccccchhhhhh-----ccccceeEEEec--CCCC-Eee
Confidence 34455542 22 78999998 899999999999 9999999988666666 788899999999 9999 999
Q ss_pred EeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEE
Q 016185 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWN 182 (394)
Q Consensus 103 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd 182 (394)
|++.|..|.+||+..|.+++.++ ...+|....|+|.+.+..+..-. +..-.+-+
T Consensus 82 tsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~-------------------------~~sp~vi~ 135 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIM-------------------------EESPVVID 135 (405)
T ss_pred eecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEe-------------------------cCCcEEEE
Confidence 99999999999999999999988 67899999999977666666555 55566666
Q ss_pred ecCCcEEEEeeccCCC-cccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeee
Q 016185 183 VQTGICILIFAGAGGH-RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 261 (394)
Q Consensus 183 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (394)
+..+.....-....+. ...-.+..|++ .|+++++|...|.+.++|..+.+ .+..+
T Consensus 136 ~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e-----------------------~vas~ 191 (405)
T KOG1273|consen 136 FSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLE-----------------------CVASF 191 (405)
T ss_pred ecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchhe-----------------------eeeee
Confidence 6542211111100011 11122335788 89999999999999999999943 34334
Q ss_pred ecCC-CceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC--CCCCeEEEEEeecCCcceEEEEe-
Q 016185 262 SVHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGN- 335 (394)
Q Consensus 262 ~~~~-~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~- 335 (394)
+... ..|..+.++ |+.++.-+.|..|+.|+++.-......+..++..+++. ...+-.+++|+.+|. +++.++
T Consensus 192 rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge--Yv~a~s~ 269 (405)
T KOG1273|consen 192 RITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE--YVCAGSA 269 (405)
T ss_pred eechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc--EEEeccc
Confidence 3333 567777776 99999999999999999874332222222222222221 223445789999994 555544
Q ss_pred CCCcEEEEEecCCCceeeEEeccCCcc-CCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 336 REGKIFVWELQSSPPVLIARLSHAQSK-SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
.-..++||.-..+. +++.+. |.. .....+.|+|-...+++- ..|.++||...
T Consensus 270 ~aHaLYIWE~~~Gs--LVKILh--G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 270 RAHALYIWEKSIGS--LVKILH--GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred cceeEEEEecCCcc--eeeeec--CCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 55789999998884 666666 444 678889999998888887 78999999864
No 117
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.5e-27 Score=191.50 Aligned_cols=289 Identities=14% Similarity=0.164 Sum_probs=222.2
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
.++|++|.|+| ...++.+++.|+ ++||.+..... ..++... -...+|.+.+|. |+|...+++++....++
T Consensus 213 ~~~I~sv~FHp----~~plllvaG~d~~lrifqvDGk~N-~~lqS~~--l~~fPi~~a~f~--p~G~~~i~~s~rrky~y 283 (514)
T KOG2055|consen 213 HGGITSVQFHP----TAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIH--LEKFPIQKAEFA--PNGHSVIFTSGRRKYLY 283 (514)
T ss_pred cCCceEEEecC----CCceEEEecCCCcEEEEEecCccC-hhheeee--eccCccceeeec--CCCceEEEecccceEEE
Confidence 57899999999 788999999998 99999754322 2232221 346688888888 89988899999999999
Q ss_pred EEECCCCeeEE--EEEecC-CceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE
Q 016185 112 VIDVSNEKLHK--SFVGHG-DSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC 188 (394)
Q Consensus 112 vwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 188 (394)
.||+.+.+..+ ...++. ..+.....+| ++++|+..+. .|.|.+....+++.
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~-------------------------~G~I~lLhakT~el 337 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGN-------------------------NGHIHLLHAKTKEL 337 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecC-CCCeEEEccc-------------------------CceEEeehhhhhhh
Confidence 99998876533 333443 4567788899 7789999998 99999999999999
Q ss_pred EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCce
Q 016185 189 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 268 (394)
Q Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 268 (394)
+..++ -.+.|..++|+. ++..|++++.+|.|.+||++... .+..+.. .+.|
T Consensus 338 i~s~K----ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~-----------------------~~~rf~D-~G~v 388 (514)
T KOG2055|consen 338 ITSFK----IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNS-----------------------CLHRFVD-DGSV 388 (514)
T ss_pred hheee----eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcc-----------------------eEEEEee-cCcc
Confidence 99998 788999999998 88999999999999999999932 2333322 2222
Q ss_pred --EEEE--EeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEe--CCCcEEE
Q 016185 269 --DCNR--WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFV 342 (394)
Q Consensus 269 --~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg~i~i 342 (394)
++++ .+++++++|+..|.|.|||.++..... ..+++..+..-...|+.+.|+++.+ +||.++ .+..+++
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---~PkPik~~dNLtt~Itsl~Fn~d~q--iLAiaS~~~knalrL 463 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---NPKPIKTVDNLTTAITSLQFNHDAQ--ILAIASRVKKNALRL 463 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccC---CCCchhhhhhhheeeeeeeeCcchh--hhhhhhhccccceEE
Confidence 2333 348999999999999999977653211 2235555555667899999999995 555554 5788999
Q ss_pred EEecCCCceeeEEec-cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 343 WELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 343 wd~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
-.+.+. .....++ ....-+.|++++|||.+.+||.|..+|.+.+|.+.
T Consensus 464 VHvPS~--TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 464 VHVPSC--TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred Eeccce--eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 998765 3444454 22344679999999999999999999999999875
No 118
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-25 Score=192.00 Aligned_cols=349 Identities=14% Similarity=0.147 Sum_probs=251.2
Q ss_pred eeecCCCceeeeecccccccceeeeeccC-ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCC
Q 016185 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEG-KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (394)
Q Consensus 4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~ 81 (394)
.|++-.++.+.+..... .+-....+.++ .+.|.+++|++ +..|.+.+.++ |.-||+.+++++..+. .
T Consensus 40 lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e-----~~RLFS~g~sg~i~EwDl~~lk~~~~~d-----~ 108 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAE-----GGRLFSSGLSGSITEWDLHTLKQKYNID-----S 108 (691)
T ss_pred eeeeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEcc-----CCeEEeecCCceEEEEecccCceeEEec-----C
Confidence 56677777766665444 44455666666 56799999996 44555555555 9999999999888877 5
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEE--EEEecCCceeEEEEcCCCCcEEEEcee--eeEEeecc
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASK--VIIISSLS 157 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~--~i~~~~~~ 157 (394)
..+.|++++.+ |.+. .++.|+.||.+..++...++... .+...++.|.+++|+| ++..+++|+. .|++|+..
T Consensus 109 ~gg~IWsiai~--p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 109 NGGAIWSIAIN--PENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred CCcceeEEEeC--Cccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcC
Confidence 78899999998 8888 99999999988888887776543 4445678999999999 7777888776 68999862
Q ss_pred c----------------------eeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeE
Q 016185 158 L----------------------ICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 215 (394)
Q Consensus 158 ~----------------------~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 215 (394)
. ..+++-.++.+++|.+.|+|++||...+..++.+. .|...|.+++..+ +++.+
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~-~~d~v 260 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVAD-NEDRV 260 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcC-CCCeE
Confidence 1 33445567899999999999999999999999988 7999999999998 88899
Q ss_pred EeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCC
Q 016185 216 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMK 295 (394)
Q Consensus 216 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~ 295 (394)
++++.|+.|..|...+.+.. -........|...+.+++..+..+++|+.|..+.+-..+..
T Consensus 261 fsaGvd~~ii~~~~~~~~~~-------------------wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~ 321 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSE-------------------WVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREF 321 (691)
T ss_pred EEccCCCceEEEEecCCccc-------------------eeeeccccCCcccceeeeeecceEEecceeeEEEEcccccc
Confidence 99999999999998874321 11233445688889999888888888888888777655442
Q ss_pred CCCCC-----------------------------------------CCcceecccc-cCCCCCeEEEEEeecCCcceEEE
Q 016185 296 EQSPG-----------------------------------------EGTADILQKY-PVPECDIWFIKFSCDFHYNAAAI 333 (394)
Q Consensus 296 ~~~~~-----------------------------------------~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~ 333 (394)
+.... ......+..+ ......|.+.+.||++ .+++.
T Consensus 322 ~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg--~~Ia~ 399 (691)
T KOG2048|consen 322 KNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDG--NLIAI 399 (691)
T ss_pred CchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCC--CEEEE
Confidence 11000 0000111111 1123457888889998 46665
Q ss_pred EeCCCcEEEEEe------------------------------------------------cCCCceeeEEeccCCccCCe
Q 016185 334 GNREGKIFVWEL------------------------------------------------QSSPPVLIARLSHAQSKSPI 365 (394)
Q Consensus 334 ~~~dg~i~iwd~------------------------------------------------~~~~~~~~~~~~~~~~~~~v 365 (394)
+.- ..+++|.+ .+...+.+..+........|
T Consensus 400 st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I 478 (691)
T KOG2048|consen 400 STV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSI 478 (691)
T ss_pred eec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcc
Confidence 551 22333332 22222222222222345789
Q ss_pred eEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 366 RQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 366 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+.+..||+|++||+.+.+|.|.+|++++
T Consensus 479 ~~l~~SsdG~yiaa~~t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 479 SRLVVSSDGNYIAAISTRGQIFVYNLET 506 (691)
T ss_pred eeEEEcCCCCEEEEEeccceEEEEEccc
Confidence 9999999999999999999999999975
No 119
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.3e-26 Score=171.59 Aligned_cols=256 Identities=14% Similarity=0.192 Sum_probs=200.8
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCC--CCcEEEEe
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--GIPFLVAG 104 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~l~s~ 104 (394)
.-+.|.+.|+|.+||| +|+++|+|+.|+ |++.-.+.......-....-.-|.+.|..++|.-.|. |. +|+++
T Consensus 84 r~khhkgsiyc~~ws~----~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~ 158 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSP----CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASA 158 (350)
T ss_pred eccccCccEEEEEecC----ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEec
Confidence 3367899999999999 899999999999 8876554332211111111125889999999975553 44 67766
Q ss_pred e-cCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEe
Q 016185 105 G-INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNV 183 (394)
Q Consensus 105 ~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~ 183 (394)
+ .|..|++-|...++..+.+.+|.+-|.++- +- ++.++++|+. |.+|++||+
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sgsq-------------------------dktirfwdl 211 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMFASGSQ-------------------------DKTIRFWDL 211 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEEEccCC-------------------------CceEEEEee
Confidence 4 577889999999999999999999988763 22 5689999999 999999999
Q ss_pred cCCcEEEEeeccC----CCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee
Q 016185 184 QTGICILIFAGAG----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 259 (394)
Q Consensus 184 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (394)
+-..++..+.... -....|.+++..| .+++|++|-.|....+||++. ..++.
T Consensus 212 rv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc~lydirg-----------------------~r~iq 267 (350)
T KOG0641|consen 212 RVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRG-----------------------GRMIQ 267 (350)
T ss_pred eccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCceEEEEeeC-----------------------Cceee
Confidence 9988888775321 1236799999999 999999999999999999999 55788
Q ss_pred eeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCC
Q 016185 260 IASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 337 (394)
Q Consensus 260 ~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 337 (394)
.+..|...|.|+.|+ ..++++++.|..|++-|++..-. ..-.+.....|...+..+.|+|.. .-+++.+.|
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla-----~el~~~vv~ehkdk~i~~rwh~~d--~sfisssad 340 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA-----HELPIMVVAEHKDKAIQCRWHPQD--FSFISSSAD 340 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh-----hcCceEEEEeccCceEEEEecCcc--ceeeeccCc
Confidence 999999999999999 45999999999999999986521 000122234467778889999998 678999999
Q ss_pred CcEEEEEec
Q 016185 338 GKIFVWELQ 346 (394)
Q Consensus 338 g~i~iwd~~ 346 (394)
.++.+|-+.
T Consensus 341 kt~tlwa~~ 349 (350)
T KOG0641|consen 341 KTATLWALN 349 (350)
T ss_pred ceEEEeccC
Confidence 999999764
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.8e-26 Score=193.56 Aligned_cols=293 Identities=15% Similarity=0.228 Sum_probs=233.2
Q ss_pred ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeE-EeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA-ALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 30 ~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
.--..+|.++||+. ..+.||.+-.++ |.||++..+-... .+.+ +....|..++|+ +.+ .|++.+.+
T Consensus 22 d~~Ps~I~slA~s~----kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g----~~drsIE~L~W~--e~~--RLFS~g~s 89 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSH----KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG----PEDRSIESLAWA--EGG--RLFSSGLS 89 (691)
T ss_pred eeeccceEEEEEec----cCCceeeeccCCcEEEEccCCCceeeEEEec----CCCCceeeEEEc--cCC--eEEeecCC
Confidence 34578999999997 566788888888 9999998754332 2332 467789999998 555 59999999
Q ss_pred CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
|.|.-||+.+++....+....+.|++++.+| .+..++.|++ ||.+..++...++
T Consensus 90 g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~Igcd-------------------------dGvl~~~s~~p~~ 143 (691)
T KOG2048|consen 90 GSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCD-------------------------DGVLYDFSIGPDK 143 (691)
T ss_pred ceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecC-------------------------CceEEEEecCCce
Confidence 9999999999999999999999999999999 7788888888 9988888877666
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeec-CCC
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSN 266 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 266 (394)
...... +...+++|.++.|+| ++..+++|+.||.|++||...+....... ..+..+.. .+.
T Consensus 144 I~~~r~-l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~----------------~~~d~l~k~~~~ 205 (691)
T KOG2048|consen 144 ITYKRS-LMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIIT----------------MQLDRLSKREPT 205 (691)
T ss_pred EEEEee-cccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEee----------------ecccccccCCce
Confidence 544322 113568999999999 99999999999999999999854322000 00111111 334
Q ss_pred ceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 267 YVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 267 ~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
-|+++.|- ...+++|...|+|.+||...+. .++.+..|...|.+++.++++ .++.+++.|+.|..|..
T Consensus 206 iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT---------LiqS~~~h~adVl~Lav~~~~--d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 206 IVWSVLFLRDSTIASGDSAGTVTFWDSIFGT---------LIQSHSCHDADVLALAVADNE--DRVFSAGVDPKIIQYSL 274 (691)
T ss_pred EEEEEEEeecCcEEEecCCceEEEEcccCcc---------hhhhhhhhhcceeEEEEcCCC--CeEEEccCCCceEEEEe
Confidence 57777776 8899999999999999999776 788999999999999999998 68999999999999998
Q ss_pred cCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 346 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
.++....+.......|...|.+++..++ .|++|+.|..+.+-..
T Consensus 275 ~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 275 TTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred cCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 8775444444445578889999999877 8999999999887543
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-26 Score=178.93 Aligned_cols=264 Identities=17% Similarity=0.297 Sum_probs=195.0
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC----eeEEEEEecCCceeEEEEc-CCCCcEEEEceeeeEEee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQ-PLKPSLVVSASKVIIISS 155 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~~i~~~~ 155 (394)
+|.+-|.++.|. +-|+ .+|+|+.|++|+|||.++. .+....+.|.+.|..+.|. |.-++.+++++.
T Consensus 11 ~h~DlihdVs~D--~~GR-RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~------ 81 (361)
T KOG2445|consen 11 GHKDLIHDVSFD--FYGR-RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY------ 81 (361)
T ss_pred CCcceeeeeeec--ccCc-eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec------
Confidence 677888888888 7799 9999999999999996543 4667788999999999995 555789999999
Q ss_pred ccceeeeeeeccceeeeccCCcEEEEEecC------C---cEEEEeeccCCCcccEEEEEecC-CCCeeEEeeccCCcEE
Q 016185 156 LSLICLLLFIRSNCLRVGQDESVRLWNVQT------G---ICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVK 225 (394)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~------~---~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~s~~~dg~v~ 225 (394)
|+++.||.-.. + .....+. .....|+++.|.| .-|-.|++++.||.+|
T Consensus 82 -------------------Drtv~iWEE~~~~~~~~~~~Wv~~ttl~---DsrssV~DV~FaP~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 82 -------------------DRTVSIWEEQEKSEEAHGRRWVRRTTLV---DSRSSVTDVKFAPKHLGLKLAAASADGILR 139 (361)
T ss_pred -------------------CCceeeeeecccccccccceeEEEEEee---cCCcceeEEEecchhcceEEEEeccCcEEE
Confidence 99999998521 1 1223333 5678999999999 3467899999999999
Q ss_pred EEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe-----CcEEEEeecC-----CeEEEecCCCC
Q 016185 226 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVD-----NEIVLWEPKMK 295 (394)
Q Consensus 226 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d-----g~i~~~d~~~~ 295 (394)
||+.........-..+ ...+..+.....+.....|+.|+ ..+|+.|+.+ +.++||.....
T Consensus 140 IYEA~dp~nLs~W~Lq----------~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~ 209 (361)
T KOG2445|consen 140 IYEAPDPMNLSQWTLQ----------HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN 209 (361)
T ss_pred EEecCCccccccchhh----------hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC
Confidence 9998873221110000 00011111223355667788886 4578887765 47888877654
Q ss_pred CCCCCCCcceecccccCCCCCeEEEEEeecCC--cceEEEEeCCCcEEEEEecCCC----------c-----eeeEEec-
Q 016185 296 EQSPGEGTADILQKYPVPECDIWFIKFSCDFH--YNAAAIGNREGKIFVWELQSSP----------P-----VLIARLS- 357 (394)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~----------~-----~~~~~~~- 357 (394)
.. ....+.++..|..+|+.++|+|+-. +.+||+++.|| |+||++.... + ..+..+.
T Consensus 210 ~r-----Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~ 283 (361)
T KOG2445|consen 210 GR-----KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE 283 (361)
T ss_pred cc-----eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence 32 2235677889999999999999853 46899999999 9999997311 0 1122222
Q ss_pred cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 358 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 358 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
+.+|.+.|..+.|+-.|..|++.|.||.||+|..
T Consensus 284 ~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 284 LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred ccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 4589999999999999999999999999999974
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=3e-26 Score=200.48 Aligned_cols=336 Identities=14% Similarity=0.161 Sum_probs=242.9
Q ss_pred cceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 016185 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~v 112 (394)
+.|+++. +|. .+-+.++.|+.++ +.+|++++++.+.+++ .+...|+++.-+ |-=. .++.|..+|+|.+
T Consensus 160 ~~Ital~-HP~--TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~-----~~~s~IT~ieqs--PaLD-VVaiG~~~G~Vii 228 (910)
T KOG1539|consen 160 DFITALL-HPS--TYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ-----EFFSRITAIEQS--PALD-VVAIGLENGTVII 228 (910)
T ss_pred CceeeEe-cch--hheeeEEEeecCCcEEEEEeccCcEEEEec-----ccccceeEeccC--Ccce-EEEEeccCceEEE
Confidence 3388775 552 2557788888887 9999999999999999 455778877655 7666 9999999999999
Q ss_pred EECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEcee--eeEEeeccc---------------eeeeee-eccceeeecc
Q 016185 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--VIIISSLSL---------------ICLLLF-IRSNCLRVGQ 174 (394)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--~i~~~~~~~---------------~~~~~~-~~~~~~~~~~ 174 (394)
++++.++.+.+++...+.|+.++|.-|+..++++++. .+-+|++.. ..+.+- ....+++++.
T Consensus 229 fNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~ 308 (910)
T KOG1539|consen 229 FNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA 308 (910)
T ss_pred EEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC
Confidence 9999999999999556999999999877778888876 688898733 111111 2346778889
Q ss_pred CCcEEEEEecCCcE-EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccccc---C-------
Q 016185 175 DESVRLWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW---T------- 243 (394)
Q Consensus 175 d~~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~------- 243 (394)
|..+++|=.+++.- .+.++...+|..+..++.|.-..+..+.+++.|++++.+++.......+..... .
T Consensus 309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~ 388 (910)
T KOG1539|consen 309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF 388 (910)
T ss_pred CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence 99999997665432 222222238999999999995589999999999999999887632211111100 0
Q ss_pred -CCCCCCCc------------------------------cccccce-------eeeecCCCceEEEEEe--CcEEEEeec
Q 016185 244 -DLPSKFPT------------------------------KYVQFPV-------FIASVHSNYVDCNRWL--GDFILSKSV 283 (394)
Q Consensus 244 -~~~~~~~~------------------------------~~~~~~~-------~~~~~~~~~i~~~~~~--~~~l~~~~~ 283 (394)
....+.+. ......+ ..++.....+++++.+ |++.+.|..
T Consensus 389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S 468 (910)
T KOG1539|consen 389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS 468 (910)
T ss_pred chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence 00000000 0000000 0001112345555554 999999999
Q ss_pred CCeEEEecCCCCCCCCCCCcceecccc---cCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCc----------
Q 016185 284 DNEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP---------- 350 (394)
Q Consensus 284 dg~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------- 350 (394)
.|.|-+|+++++. ...++ +.|..+|+.++...-+ +.+++++.+|.+.+||..+...
T Consensus 469 ~G~Id~fNmQSGi---------~r~sf~~~~ah~~~V~gla~D~~n--~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~ 537 (910)
T KOG1539|consen 469 KGTIDRFNMQSGI---------HRKSFGDSPAHKGEVTGLAVDGTN--RLLVSAGADGILKFWDFKKKVLKKSLRLGSSI 537 (910)
T ss_pred CCeEEEEEcccCe---------eecccccCccccCceeEEEecCCC--ceEEEccCcceEEEEecCCcceeeeeccCCCc
Confidence 9999999999985 23344 5789999999987777 6899999999999999876531
Q ss_pred -----------------------------eeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 351 -----------------------------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 351 -----------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+.++.+. +|.+.|++++|||||++|++++.|++|++||+-+
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 0112222 7999999999999999999999999999999865
No 123
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.3e-27 Score=212.44 Aligned_cols=252 Identities=16% Similarity=0.179 Sum_probs=204.4
Q ss_pred eeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC------------------ceeEEeeecccCCcccc
Q 016185 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG------------------GVIAALQSYVDEDKEES 85 (394)
Q Consensus 25 ~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~------------------~~~~~~~~~~~~~~~~~ 85 (394)
+..+...|.+.|+|+.|+| ||.+||+|++|+ |.||..... +....+. +|...
T Consensus 61 ~l~~m~~h~~sv~CVR~S~----dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-----~H~~D 131 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSP----DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-----GHDSD 131 (942)
T ss_pred hheeeccccCceeEEEECC----CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-----cCCCc
Confidence 3445578999999999999 899999999999 999997730 0122233 69999
Q ss_pred eEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeee
Q 016185 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFI 165 (394)
Q Consensus 86 v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~ 165 (394)
|..++|+ |++. +|++++.|++|.|||..+.+.+..+.+|.+.|..+.|.| -+++|++-++
T Consensus 132 V~Dv~Ws--p~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsd---------------- 191 (942)
T KOG0973|consen 132 VLDVNWS--PDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSD---------------- 191 (942)
T ss_pred cceeccC--CCcc-EEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecC----------------
Confidence 9999999 8999 999999999999999999999999999999999999999 8899999999
Q ss_pred ccceeeeccCCcEEEEEecCCcEEEEeeccC---CCcccEEEEEecCCCCeeEEeecc----CCcEEEEEccccceeecc
Q 016185 166 RSNCLRVGQDESVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEK 238 (394)
Q Consensus 166 ~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~ 238 (394)
|++|+||++.+-...+.+..+. .-...++.+.|+| ||.+|++... -..+.|.+-.+
T Consensus 192 ---------Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~t------- 254 (942)
T KOG0973|consen 192 ---------DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGT------- 254 (942)
T ss_pred ---------CceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCC-------
Confidence 9999999987766666665321 1234678999999 9999998742 33566666544
Q ss_pred ccccCCCCCCCCccccccceeeeecCCCceEEEEEe-------Cc------------EEEEeecCCeEEEecCCCCCCCC
Q 016185 239 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------GD------------FILSKSVDNEIVLWEPKMKEQSP 299 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~------------~l~~~~~dg~i~~~d~~~~~~~~ 299 (394)
...-..+-+|..++.++.|+ .+ .+++|+.|+.|.||.....++
T Consensus 255 ----------------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP-- 316 (942)
T KOG0973|consen 255 ----------------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP-- 316 (942)
T ss_pred ----------------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc--
Confidence 23355778999999999996 12 688999999999999876553
Q ss_pred CCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 300 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 300 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
.+--+......|..++|+||| ..|+.++.||+|.++.++.+
T Consensus 317 ------l~vi~~lf~~SI~DmsWspdG--~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 317 ------LFVIHNLFNKSIVDMSWSPDG--FSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ------hhhhhhhhcCceeeeeEcCCC--CeEEEEecCCeEEEEEcchH
Confidence 223333445689999999999 68999999999999999754
No 124
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=186.15 Aligned_cols=249 Identities=16% Similarity=0.328 Sum_probs=195.3
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC------------C------eeEEEEEecCCceeEEEEcCCCCc
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------------E------KLHKSFVGHGDSINEIRTQPLKPS 142 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~ 142 (394)
.|+.++.+.+|+ +||. ++++|+.|..|+|.|++. + -.++++..|.++|+++.|+| ...
T Consensus 110 ~HK~~cR~aafs--~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ 185 (430)
T KOG0640|consen 110 SHKSPCRAAAFS--PDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RET 185 (430)
T ss_pred ecccceeeeeeC--CCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhh
Confidence 688888888887 9999 999999999999999861 1 24778889999999999999 789
Q ss_pred EEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC
Q 016185 143 LVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 222 (394)
Q Consensus 143 ~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg 222 (394)
+|++++. |++|+++|+......+.++.+ ....+|.++.|+| .|.+|+.|..-.
T Consensus 186 ILiS~sr-------------------------D~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHP-sGefllvgTdHp 238 (430)
T KOG0640|consen 186 ILISGSR-------------------------DNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHP-SGEFLLVGTDHP 238 (430)
T ss_pred eEEeccC-------------------------CCeEEEEecccHHHHHHHHHh-hccceeeeEeecC-CCceEEEecCCC
Confidence 9999999 999999998754332222211 2567899999999 999999999999
Q ss_pred cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCC
Q 016185 223 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG 300 (394)
Q Consensus 223 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~ 300 (394)
.+++||+.+.+.... ...-..|.+.|+++.++ +++.++++.||.|++||--+++
T Consensus 239 ~~rlYdv~T~Qcfvs--------------------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---- 294 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVS--------------------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---- 294 (430)
T ss_pred ceeEEeccceeEeee--------------------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH----
Confidence 999999999654321 22345799999999998 8899999999999999988776
Q ss_pred CCcceecccccC-C-CCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCc---cCCeeEEEeccCCC
Q 016185 301 EGTADILQKYPV-P-ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS---KSPIRQTAMSYDGS 375 (394)
Q Consensus 301 ~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~ 375 (394)
++..+.. | ...|.+..|..++ +++++.+.|..+++|.+.++. .+..+...+- ...-+...|+....
T Consensus 295 -----Cv~t~~~AH~gsevcSa~Ftkn~--kyiLsSG~DS~vkLWEi~t~R--~l~~YtGAg~tgrq~~rtqAvFNhtEd 365 (430)
T KOG0640|consen 295 -----CVRTIGNAHGGSEVCSAVFTKNG--KYILSSGKDSTVKLWEISTGR--MLKEYTGAGTTGRQKHRTQAVFNHTED 365 (430)
T ss_pred -----HHHHHHhhcCCceeeeEEEccCC--eEEeecCCcceeeeeeecCCc--eEEEEecCCcccchhhhhhhhhcCccc
Confidence 5555442 3 3568999999999 799999999999999999985 5555552222 22234456777777
Q ss_pred EEEEec-cCCeEEEEEcCC
Q 016185 376 TILSCC-EDGAIWRWDAIP 393 (394)
Q Consensus 376 ~l~s~~-~dg~i~iwd~~~ 393 (394)
+++.-. ..+.+.-||-++
T Consensus 366 yVl~pDEas~slcsWdaRt 384 (430)
T KOG0640|consen 366 YVLFPDEASNSLCSWDART 384 (430)
T ss_pred eEEccccccCceeeccccc
Confidence 766554 345678888664
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=5.4e-27 Score=201.10 Aligned_cols=256 Identities=20% Similarity=0.362 Sum_probs=216.4
Q ss_pred ecCCCceeeeecccccccceeeeeccCccceeE-EEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcc
Q 016185 6 IGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYA-VVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE 83 (394)
Q Consensus 6 ~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~ 83 (394)
.|..++..++.......|...+.+.+|.+-|.+ ++|-+. ++..+++|+.|. |.+|......++..+. +|+
T Consensus 30 s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~---~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-----gH~ 101 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES---DKGRLVVGGMDTTIIVFKLSQAEPLYTLK-----GHK 101 (745)
T ss_pred ecCCCCceeeeeccCcccccceecccCcceeeccceeccc---cCcceEeecccceEEEEecCCCCchhhhh-----ccc
Confidence 344455666666666777777888999998888 888762 456789999998 9999999999998888 788
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeee
Q 016185 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLL 163 (394)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~ 163 (394)
..|.+++.. .++ .+++|+.|.++++|.. +++...+++|+..|+++...| +. .++||+.
T Consensus 102 snVC~ls~~--~~~--~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsa-------------- 159 (745)
T KOG0301|consen 102 SNVCSLSIG--EDG--TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSA-------------- 159 (745)
T ss_pred cceeeeecC--CcC--ceEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccC--------------
Confidence 888888765 555 4999999999999975 567777999999999999998 43 8899999
Q ss_pred eeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccC
Q 016185 164 FIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 243 (394)
Q Consensus 164 ~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 243 (394)
|.+|++|.- ++.+++|. +|++.|+.+++.+ + ..|++++.||.|++|++..
T Consensus 160 -----------DKtIklWk~--~~~l~tf~---gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~g------------ 209 (745)
T KOG0301|consen 160 -----------DKTIKLWKG--GTLLKTFS---GHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLDG------------ 209 (745)
T ss_pred -----------cceeeeccC--Cchhhhhc---cchhheeeeEEec-C-CCeEeecCCceEEEEeccC------------
Confidence 999999984 78888888 8999999999996 4 4599999999999999954
Q ss_pred CCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEE
Q 016185 244 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 321 (394)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 321 (394)
..+..+.+|++.+.+++.. ++.+++++.|+++++|+... +.+.+..+...|+++.
T Consensus 210 ------------e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e-----------~~q~I~lPttsiWsa~ 266 (745)
T KOG0301|consen 210 ------------EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE-----------CVQVITLPTTSIWSAK 266 (745)
T ss_pred ------------ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc-----------eEEEEecCccceEEEE
Confidence 4588899999999999954 78999999999999999772 5677777777899999
Q ss_pred EeecCCcceEEEEeCCCcEEEEEecC
Q 016185 322 FSCDFHYNAAAIGNREGKIFVWELQS 347 (394)
Q Consensus 322 ~~~~~~~~~l~~~~~dg~i~iwd~~~ 347 (394)
+-+++ -+++|+.||.||||....
T Consensus 267 ~L~Ng---DIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 267 VLLNG---DIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EeeCC---CEEEeccCceEEEEEecc
Confidence 99998 489999999999998864
No 126
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=7.5e-27 Score=186.47 Aligned_cols=250 Identities=16% Similarity=0.268 Sum_probs=195.4
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC----------------CeeEEEEEecCCceeEEEEcCCCCcEE
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----------------EKLHKSFVGHGDSINEIRTQPLKPSLV 144 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l 144 (394)
.|.+.+..+..+.-++.. +.++-+..|.|+||++.. .+++.++.+|...=+.++|+|.....|
T Consensus 149 ~h~g~~NRvr~~~~~~~~-~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEV-LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccCCcc-eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 466667766666333444 777889999999999742 246788889999999999999666678
Q ss_pred EEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcE
Q 016185 145 VSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 224 (394)
Q Consensus 145 ~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v 224 (394)
++|.- -+.|++|...+|.-..--..+-+|+..|-.++|+|.....|++|+.||+|
T Consensus 228 lsGDc-------------------------~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 228 LSGDC-------------------------VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred ccCcc-------------------------ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceE
Confidence 88887 88999999988765433333337999999999999778899999999999
Q ss_pred EEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCC
Q 016185 225 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG 302 (394)
Q Consensus 225 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 302 (394)
+|||+|..+ ..+....+.|...|..|.|+ -.+|++|+.||+++|||++..+.
T Consensus 283 rIWDiRs~~---------------------~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~----- 336 (440)
T KOG0302|consen 283 RIWDIRSGP---------------------KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS----- 336 (440)
T ss_pred EEEEecCCC---------------------ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC-----
Confidence 999999953 23344558899999999998 33899999999999999998763
Q ss_pred cceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCc------e---ee------EEeccCCccCCeeE
Q 016185 303 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP------V---LI------ARLSHAQSKSPIRQ 367 (394)
Q Consensus 303 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~---~~------~~~~~~~~~~~v~~ 367 (394)
.+++..++.|..+|+++.|+|... ..+++++.|.+|.+||+.-... . .+ .-|-|.+ ...+..
T Consensus 337 -~~pVA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~Ke 413 (440)
T KOG0302|consen 337 -GQPVATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKE 413 (440)
T ss_pred -CCcceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhh
Confidence 347889999999999999999877 5899999999999999964321 0 00 1111212 356888
Q ss_pred EEeccC-CCEEEEeccCCe
Q 016185 368 TAMSYD-GSTILSCCEDGA 385 (394)
Q Consensus 368 ~~~s~~-~~~l~s~~~dg~ 385 (394)
+.|++. ..+|++.+.||.
T Consensus 414 vhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 414 VHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred heeccCCCCeEEEecccce
Confidence 999986 458888888874
No 127
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.8e-27 Score=191.99 Aligned_cols=254 Identities=16% Similarity=0.220 Sum_probs=202.3
Q ss_pred ceeEEEEEee---CCCcceEEEEecCCc-EEEEEcCCCcee----------------EEeeecccCCcccceEEEEEEEc
Q 016185 35 PLYAVVFNFI---DSRYFNVFATVGGNR-VTVYQCLEGGVI----------------AALQSYVDEDKEESFYTVSWACN 94 (394)
Q Consensus 35 ~v~~i~~sp~---~~~~~~~las~~~d~-i~vw~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~ 94 (394)
.-.|++|.-. ++..|+++|.|..+. |.|||+.--..+ ..-+.+...+|...|..++|.
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n-- 252 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN-- 252 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc--
Confidence 3467777532 334589999999999 999998632111 011223344688888888888
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeecc
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQ 174 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
..-+..||+|+.|.+|++||+.++++..++..|.+.|.++.|+|..+..|++|+.
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~------------------------- 307 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSY------------------------- 307 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccc-------------------------
Confidence 6566699999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecC-CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccc
Q 016185 175 DESVRLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 253 (394)
Q Consensus 175 d~~i~vwd~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (394)
|++|.+.|.+. +..-..++ ..+.|-.++|+|.....++++..||+|+-+|+|..
T Consensus 308 D~~V~l~D~R~~~~s~~~wk----~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------------------- 362 (463)
T KOG0270|consen 308 DGTVALKDCRDPSNSGKEWK----FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------------------- 362 (463)
T ss_pred cceEEeeeccCccccCceEE----eccceEEEEecCCCceeEEEecCCceEEeeecCCC---------------------
Confidence 99999999984 33344444 67889999999978889999999999999999993
Q ss_pred cccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcce
Q 016185 254 VQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 330 (394)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 330 (394)
..++..+..|...|.++.++ +.++++++.|+.+++|++....... +......-+...|.++.|+-. ..
T Consensus 363 -~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~-------v~~~~~~~~rl~c~~~~~~~a-~~ 433 (463)
T KOG0270|consen 363 -GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS-------VKEHSFKLGRLHCFALDPDVA-FT 433 (463)
T ss_pred -CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-------cccccccccceeecccCCCcc-eE
Confidence 36899999999999999998 7799999999999999998664321 111111122356778888876 47
Q ss_pred EEEEeCCCcEEEEEecCCC
Q 016185 331 AAIGNREGKIFVWELQSSP 349 (394)
Q Consensus 331 l~~~~~dg~i~iwd~~~~~ 349 (394)
++.|+..+.+++||+.+..
T Consensus 434 la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred EEecCccceEEEeecccCh
Confidence 8889988899999998875
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-27 Score=184.53 Aligned_cols=242 Identities=18% Similarity=0.304 Sum_probs=203.9
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
+|.+.|+.++.. . +++++.+++.|.+-+||.+++++++.++.+|.+.|++++|++ .+.++++++.
T Consensus 146 GHkDGiW~Vaa~--~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSG----------- 210 (481)
T KOG0300|consen 146 GHKDGIWHVAAD--S-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASG----------- 210 (481)
T ss_pred ccccceeeehhh--c-CCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccC-----------
Confidence 789999998875 3 344899999999999999999999999999999999999999 8889999887
Q ss_pred eeeeeccceeeeccCCcEEEEEe------c------------------------------CC----cEEEEeeccCCCcc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNV------Q------------------------------TG----ICILIFAGAGGHRN 200 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~------~------------------------------~~----~~~~~~~~~~~~~~ 200 (394)
|++-.||.. . .+ .++..+. +|..
T Consensus 211 --------------D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt---gH~~ 273 (481)
T KOG0300|consen 211 --------------DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT---GHRA 273 (481)
T ss_pred --------------CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee---cccc
Confidence 555555541 0 00 1334444 8999
Q ss_pred cEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEE
Q 016185 201 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 278 (394)
Q Consensus 201 ~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 278 (394)
.|.+..|.. .+..+++++.|.+..+||+.+ ..++..+.+|....+-+.-+ .+++
T Consensus 274 vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEt-----------------------ge~v~~LtGHd~ELtHcstHptQrLV 329 (481)
T KOG0300|consen 274 VVSACDWLA-GGQQMVTASWDRTANLWDVET-----------------------GEVVNILTGHDSELTHCSTHPTQRLV 329 (481)
T ss_pred ceEehhhhc-Ccceeeeeeccccceeeeecc-----------------------CceeccccCcchhccccccCCcceEE
Confidence 999999998 999999999999999999999 55788888998888777665 6789
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEecc
Q 016185 279 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 358 (394)
Q Consensus 279 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (394)
++++.|.+.++||.+..- ..+..|++|...|+++.|..+. .+++|+.|.+|++||+++.. ..+.++..
T Consensus 330 vTsSrDtTFRLWDFReaI--------~sV~VFQGHtdtVTS~vF~~dd---~vVSgSDDrTvKvWdLrNMR-splATIRt 397 (481)
T KOG0300|consen 330 VTSSRDTTFRLWDFREAI--------QSVAVFQGHTDTVTSVVFNTDD---RVVSGSDDRTVKVWDLRNMR-SPLATIRT 397 (481)
T ss_pred EEeccCceeEeccchhhc--------ceeeeecccccceeEEEEecCC---ceeecCCCceEEEeeecccc-Ccceeeec
Confidence 999999999999999543 3678899999999999999987 69999999999999999865 35555552
Q ss_pred CCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 359 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 359 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
. ++++.++.+..++.+|.--.+..|++||+..
T Consensus 398 d---S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 398 D---SPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred C---CccceeEeecCCceEEeccCCceEEEEecCC
Confidence 2 6899999999889999999999999999863
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=3.6e-25 Score=189.20 Aligned_cols=266 Identities=13% Similarity=0.115 Sum_probs=187.7
Q ss_pred eEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecC
Q 016185 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (394)
Q Consensus 50 ~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (394)
+++++++.|+ +++||+.+++.+..+.. + ..+..++|+ |+++.++++++.++.|++||..+++....+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~-----~-~~~~~l~~~--~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPV-----G-QRPRGITLS--KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEEC-----C-CCCCceEEC--CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence 5788888888 99999999887777762 2 224557776 9998334677889999999999988887776554
Q ss_pred CceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEec
Q 016185 129 DSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 208 (394)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~ 208 (394)
. +..++|+|++..++++++. ++.|++||+++++.+..+. +...+.+++|+
T Consensus 74 ~-~~~~~~~~~g~~l~~~~~~-------------------------~~~l~~~d~~~~~~~~~~~----~~~~~~~~~~~ 123 (300)
T TIGR03866 74 D-PELFALHPNGKILYIANED-------------------------DNLVTVIDIETRKVLAEIP----VGVEPEGMAVS 123 (300)
T ss_pred C-ccEEEECCCCCEEEEEcCC-------------------------CCeEEEEECCCCeEEeEee----CCCCcceEEEC
Confidence 3 5678999954445566677 8999999999888777765 34456889999
Q ss_pred CCCCeeEEeeccCC-cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEE-EeecC
Q 016185 209 PSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-SKSVD 284 (394)
Q Consensus 209 ~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~-~~~~d 284 (394)
| ++.++++++.++ .+.+||..+.+. ..... ......++.|+ +++++ ++..+
T Consensus 124 ~-dg~~l~~~~~~~~~~~~~d~~~~~~-----------------------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 124 P-DGKIVVNTSETTNMAHFIDTKTYEI-----------------------VDNVL-VDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred C-CCCEEEEEecCCCeEEEEeCCCCeE-----------------------EEEEE-cCCCccEEEECCCCCEEEEEcCCC
Confidence 9 898888888765 467778876321 11111 12234556665 66664 54569
Q ss_pred CeEEEecCCCCCCCCCCCcceecccccC-----C--CCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEec
Q 016185 285 NEIVLWEPKMKEQSPGEGTADILQKYPV-----P--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 357 (394)
Q Consensus 285 g~i~~~d~~~~~~~~~~~~~~~~~~~~~-----~--~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (394)
+.|++||+++++. +..+.. + ......++|+|+++ ..+++.+.++.+.+||+.+++ ....+.
T Consensus 179 ~~v~i~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~s~dg~-~~~~~~~~~~~i~v~d~~~~~--~~~~~~ 246 (300)
T TIGR03866 179 GTVSVIDVATRKV---------IKKITFEIPGVHPEAVQPVGIKLTKDGK-TAFVALGPANRVAVVDAKTYE--VLDYLL 246 (300)
T ss_pred CEEEEEEcCccee---------eeeeeecccccccccCCccceEECCCCC-EEEEEcCCCCeEEEEECCCCc--EEEEEE
Confidence 9999999998752 221111 1 11234688999995 223444556789999998764 333332
Q ss_pred cCCccCCeeEEEeccCCCEEEEe-ccCCeEEEEEcCC
Q 016185 358 HAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRWDAIP 393 (394)
Q Consensus 358 ~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~ 393 (394)
+...+.+++|+|+|++|+++ +.+|.|++||+++
T Consensus 247 ---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 247 ---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 22468899999999999886 4689999999875
No 130
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.4e-27 Score=195.11 Aligned_cols=258 Identities=17% Similarity=0.254 Sum_probs=184.1
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC----eeEEEEE-ecCCceeEEEEcCCCCcEEEEceeeeEEee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFV-GHGDSINEIRTQPLKPSLVVSASKVIIISS 155 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~ 155 (394)
+|...|..+++. |.|. .+++|+.|..|++||+... +..+.+. .....|.++.|++ .+..|++.+.
T Consensus 165 hgtk~Vsal~~D--p~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg------ 234 (641)
T KOG0772|consen 165 HGTKIVSALAVD--PSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSG------ 234 (641)
T ss_pred CCceEEEEeeec--CCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEec------
Confidence 677788888777 9999 9999999999999998743 2222222 3345799999999 4455444444
Q ss_pred ccceeeeeeeccceeeeccCCcEEEEEecCCcEE---------EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEE
Q 016185 156 LSLICLLLFIRSNCLRVGQDESVRLWNVQTGICI---------LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 226 (394)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~i 226 (394)
....+|+|-...+.. ..+...++|...++|.+|+|.+...|++++.||++|+
T Consensus 235 -------------------~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 235 -------------------SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred -------------------CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 667788875432222 2222345899999999999977889999999999999
Q ss_pred EEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcc
Q 016185 227 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA 304 (394)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 304 (394)
||+...+...+-. ......+..-.++..+|+ +..|++|+.||.|.+|+..+....+
T Consensus 296 Wdv~~~k~q~qVi-----------------k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p----- 353 (641)
T KOG0772|consen 296 WDVNNTKSQLQVI-----------------KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP----- 353 (641)
T ss_pred EecCCchhheeEE-----------------eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc-----
Confidence 9999854322110 011122344567888887 8899999999999999986543211
Q ss_pred eecccccCCC--CCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEec-
Q 016185 305 DILQKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC- 381 (394)
Q Consensus 305 ~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~- 381 (394)
.+..-..|. ..|+++.||++| ++|++-+.|+++++||++... +.+.....-...-+-+.++|||+.++|++|.
T Consensus 354 -~~~vk~AH~~g~~Itsi~FS~dg--~~LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 354 -VMKVKDAHLPGQDITSISFSYDG--NYLLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred -ceEeeeccCCCCceeEEEecccc--chhhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 122223444 489999999999 699999999999999999864 2333333112234567899999999999985
Q ss_pred -----cCCeEEEEEcCC
Q 016185 382 -----EDGAIWRWDAIP 393 (394)
Q Consensus 382 -----~dg~i~iwd~~~ 393 (394)
..|.+++||-.+
T Consensus 430 ~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccCCCCCceEEEEeccc
Confidence 356788888653
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3e-27 Score=187.81 Aligned_cols=264 Identities=15% Similarity=0.240 Sum_probs=211.6
Q ss_pred eeeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCC
Q 016185 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (394)
Q Consensus 3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~ 81 (394)
.+|.|..++.+.+... ..-.....+++|.+.|..|++.. +.++++++|+ |+.|-+.. .+++++.
T Consensus 81 ~~aSGs~DG~VkiWnl--sqR~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~~-~p~~til------ 145 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNL--SQRECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKIDG-PPLHTIL------ 145 (433)
T ss_pred hhhccccCceEEEEeh--hhhhhhheeecccCceeeEEecc------cceEEecCCcceeeeeccC-Ccceeee------
Confidence 3567777877777644 44456778999999999999984 4566777776 99999654 3444443
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
.+..+..+.-. ..+. .++|++. .|.|||.+...+++++.-....|.++.|+|....+|++|+.
T Consensus 146 g~s~~~gIdh~--~~~~-~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s------------ 208 (433)
T KOG0268|consen 146 GKSVYLGIDHH--RKNS-VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS------------ 208 (433)
T ss_pred ccccccccccc--cccc-cccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc------------
Confidence 23344444433 4444 6788875 48999999999999999888899999999988889999988
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccc
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 241 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 241 (394)
|++|.+||++++.+++.+. -...-+.|+|+| ....|++++.|..++.||++..
T Consensus 209 -------------DrsIvLyD~R~~~Pl~KVi----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l--------- 261 (433)
T KOG0268|consen 209 -------------DRSIVLYDLRQASPLKKVI----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL--------- 261 (433)
T ss_pred -------------CCceEEEecccCCccceee----eeccccceecCc-cccceeeccccccceehhhhhh---------
Confidence 9999999999999988876 566778999999 9999999999999999999994
Q ss_pred cCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEE
Q 016185 242 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 319 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 319 (394)
..|+....+|.+.|.+++|+ |+-+++|+.|.+|+||..+.+.... ...+ ..-..|.+
T Consensus 262 -------------~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd------iYht--kRMq~V~~ 320 (433)
T KOG0268|consen 262 -------------SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD------IYHT--KRMQHVFC 320 (433)
T ss_pred -------------cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh------hhhH--hhhheeeE
Confidence 45788889999999999998 9999999999999999998775211 1111 11236899
Q ss_pred EEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 320 IKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 320 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
+.|+.|. .++++|+.|+.|++|.....
T Consensus 321 Vk~S~Ds--kyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 321 VKYSMDS--KYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEEeccc--cEEEecCCCcceeeeecchh
Confidence 9999999 69999999999999987644
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=188.20 Aligned_cols=235 Identities=16% Similarity=0.210 Sum_probs=188.1
Q ss_pred CCCcEEEEeecCCeEEEEECCCC---eeEE------------------EEEecCCceeEEEEcCCCCcEEEEceeeeEEe
Q 016185 96 DGIPFLVAGGINGIIRVIDVSNE---KLHK------------------SFVGHGDSINEIRTQPLKPSLVVSASKVIIIS 154 (394)
Q Consensus 96 ~~~~~l~s~~~dg~i~vwd~~~~---~~~~------------------~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~ 154 (394)
.|+ ++|.|..|..|.|||+.-. .+.. .-.+|+..|.+++|+..-.++|+|||.
T Consensus 191 ~gN-yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsa----- 264 (463)
T KOG0270|consen 191 AGN-YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSA----- 264 (463)
T ss_pred Ccc-eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCC-----
Confidence 355 9999999999999998521 1111 123688899999999877899999999
Q ss_pred eccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccce
Q 016185 155 SLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234 (394)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 234 (394)
|.+|++||+.++++...+. .|...|.++.|+|.....|++|+.|++|.+.|.|....
T Consensus 265 --------------------D~TV~lWD~~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~ 321 (463)
T KOG0270|consen 265 --------------------DKTVKLWDVDTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN 321 (463)
T ss_pred --------------------CceEEEEEcCCCCcceehh---hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc
Confidence 9999999999999999998 69999999999998899999999999999999996211
Q ss_pred eeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceeccccc
Q 016185 235 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 311 (394)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 311 (394)
.-..+ .-.+.|-.++|+ ...++++..||+++-+|+++... ++..+.
T Consensus 322 ----------------------s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~--------~vwt~~ 370 (463)
T KOG0270|consen 322 ----------------------SGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK--------PVWTLK 370 (463)
T ss_pred ----------------------cCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC--------ceeEEE
Confidence 01111 124567777886 66888999999999999998753 788999
Q ss_pred CCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCC-CEEEEeccCCeEEEEE
Q 016185 312 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWD 390 (394)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd 390 (394)
.|..+|.++++++... .++++++.|+.|++|++....+..+..-. -.-+...+.++.|+- -.||.|+..+.++|||
T Consensus 371 AHd~~ISgl~~n~~~p-~~l~t~s~d~~Vklw~~~~~~~~~v~~~~--~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 371 AHDDEISGLSVNIQTP-GLLSTASTDKVVKLWKFDVDSPKSVKEHS--FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred eccCCcceEEecCCCC-cceeeccccceEEEEeecCCCCccccccc--ccccceeecccCCCcceEEEecCccceEEEee
Confidence 9999999999999887 58999999999999999877654443322 112346667777764 4678888888999999
Q ss_pred cCC
Q 016185 391 AIP 393 (394)
Q Consensus 391 ~~~ 393 (394)
+.+
T Consensus 448 ~~~ 450 (463)
T KOG0270|consen 448 IFT 450 (463)
T ss_pred ccc
Confidence 864
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=9e-26 Score=184.66 Aligned_cols=306 Identities=14% Similarity=0.199 Sum_probs=216.8
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCce-eEEeeecccCCcccceEEEEEEEcCCCC
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGI 98 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (394)
..+.....++-|.++|++++|+|.. +-+++|+|...+ |-+||+.+.+. ...+..+. .|..+|.++.|+ |.+.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~--~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--~hs~~Vs~l~F~--P~n~ 247 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTE--NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--PHSGPVSGLKFS--PANT 247 (498)
T ss_pred ccceecceeEecccceEEEEecccC--cceEEEEccCCCcEEEEecCCCCCccCceEEec--cCCccccceEec--CCCh
Confidence 3444556667889999999999942 336888888877 99999953222 12222222 688999999998 6666
Q ss_pred cEEEEeecCCeEEEEECCCCee--EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 99 PFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 99 ~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
..+++.+.||+|+.-|++.+.. +.++......+..+.|+..++ .++.+.. =|
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~-------------------------~G 301 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDN-------------------------VG 301 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeec-------------------------cc
Confidence 6899999999999999987643 333333455677888888444 4444454 56
Q ss_pred cEEEEEecCCcE-EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccc
Q 016185 177 SVRLWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 255 (394)
Q Consensus 177 ~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (394)
...+||.+++.. ...+. -|...|.+++++|....+|+|++.|++.+|||++..... .
T Consensus 302 ~f~~iD~R~~~s~~~~~~---lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K-------------------~ 359 (498)
T KOG4328|consen 302 NFNVIDLRTDGSEYENLR---LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK-------------------A 359 (498)
T ss_pred ceEEEEeecCCccchhhh---hhhcccceeecCCCCchheeecccCcceeeeehhhhcCC-------------------C
Confidence 999999998765 44444 588899999999988899999999999999999994320 1
Q ss_pred cceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCC----CCCCCCCCCcceecccccCC--CCCeEEEEEeecCC
Q 016185 256 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK----MKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFH 327 (394)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~ 327 (394)
.|+.....|...|.+..|+ +..|++.+.|..|+|||.. ...... .+..-..+ --......|.|+.
T Consensus 360 sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~------~I~Hn~~t~RwlT~fKA~W~P~~- 432 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG------TIPHNNRTGRWLTPFKAAWDPDY- 432 (498)
T ss_pred CcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc------eeeccCcccccccchhheeCCCc-
Confidence 1456667899999999998 4459999999999999984 111100 11110001 1123456799987
Q ss_pred cceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeE-EEeccCCC-EEEEeccCCeEEEEEc
Q 016185 328 YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ-TAMSYDGS-TILSCCEDGAIWRWDA 391 (394)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~-~l~s~~~dg~i~iwd~ 391 (394)
.++++|..-..|-|+|-..++ .+..+..+. ...|.+ ..|+|-+. +++.++..|.|+||--
T Consensus 433 -~li~vg~~~r~IDv~~~~~~q--~v~el~~P~-~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 433 -NLIVVGRYPRPIDVFDGNGGQ--MVCELHDPE-SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred -cEEEEeccCcceeEEcCCCCE--EeeeccCcc-ccccccceeecccccceeccCCccceEEEEec
Confidence 799999999999999988773 455544211 123433 58999888 4455557789999964
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.5e-27 Score=202.59 Aligned_cols=240 Identities=16% Similarity=0.304 Sum_probs=189.3
Q ss_pred eEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC----eeEEEEEec---CCceeEEEEcCCCCcEEEEceeeeEEeeccc
Q 016185 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGH---GDSINEIRTQPLKPSLVVSASKVIIISSLSL 158 (394)
Q Consensus 86 v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~ 158 (394)
..+++.. ++-. .++.++.. .+.||.+... ++...++.- .-.+..+.|.....++|++++.
T Consensus 42 ~nAIs~n--r~~~-qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~--------- 108 (839)
T KOG0269|consen 42 ANAISVN--RDIN-QIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST--------- 108 (839)
T ss_pred cceEeec--CCcc-eeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC---------
Confidence 3344444 6666 55555543 5667766543 222222211 1235678888777889999999
Q ss_pred eeeeeeeccceeeeccCCcEEEEEecC---CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEcccccee
Q 016185 159 ICLLLFIRSNCLRVGQDESVRLWNVQT---GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY 235 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 235 (394)
.|.|.+||+.. .+.+..|. .|+..+.++.|++...++|++|+.||.|++||++.
T Consensus 109 ----------------nG~i~vWdlnk~~rnk~l~~f~---EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~---- 165 (839)
T KOG0269|consen 109 ----------------NGVISVWDLNKSIRNKLLTVFN---EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS---- 165 (839)
T ss_pred ----------------CCcEEEEecCccccchhhhHhh---hhccceeeeeeccCCccEEEecCCCceEEEEeeec----
Confidence 99999999987 45556676 79999999999998889999999999999999999
Q ss_pred eccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC
Q 016185 236 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV 312 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 312 (394)
.....+..+....|+.|.|+ +.+++++...|.+++||++...+ ....+..
T Consensus 166 -------------------~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r--------~~~k~~A 218 (839)
T KOG0269|consen 166 -------------------KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR--------CEKKLTA 218 (839)
T ss_pred -------------------ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh--------HHHHhhc
Confidence 34456666778889999998 77999999999999999998764 7788999
Q ss_pred CCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCC-EEEEec--cCCeEEEE
Q 016185 313 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCC--EDGAIWRW 389 (394)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~--~dg~i~iw 389 (394)
|.++|.++.|+|++ .+||+|+.|+.|+|||+.+.+......+.. ..+|..++|-|..+ .||+++ .|-.|+||
T Consensus 219 H~GpV~c~nwhPnr--~~lATGGRDK~vkiWd~t~~~~~~~~tInT---iapv~rVkWRP~~~~hLAtcsmv~dtsV~VW 293 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNR--EWLATGGRDKMVKIWDMTDSRAKPKHTINT---IAPVGRVKWRPARSYHLATCSMVVDTSVHVW 293 (839)
T ss_pred ccCceEEEeecCCC--ceeeecCCCccEEEEeccCCCccceeEEee---cceeeeeeeccCccchhhhhhccccceEEEE
Confidence 99999999999987 799999999999999999876666666652 27899999999865 566665 68899999
Q ss_pred EcCC
Q 016185 390 DAIP 393 (394)
Q Consensus 390 d~~~ 393 (394)
|++.
T Consensus 294 DvrR 297 (839)
T KOG0269|consen 294 DVRR 297 (839)
T ss_pred eecc
Confidence 9974
No 135
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-25 Score=172.91 Aligned_cols=261 Identities=15% Similarity=0.272 Sum_probs=198.5
Q ss_pred ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc----eeEEeeecccCCcccceEEEEEEEcCCCCcEEEEe
Q 016185 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (394)
Q Consensus 30 ~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 104 (394)
.+|.+-|+++.|.+ .|+.+|+|+.|+ |+|||..+.. .....+ .|.+.|..+.|....-|+ .+|++
T Consensus 10 s~h~DlihdVs~D~----~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-----ah~~Si~rV~WAhPEfGq-vvA~c 79 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF----YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-----AHDGSIWRVVWAHPEFGQ-VVATC 79 (361)
T ss_pred cCCcceeeeeeecc----cCceeeeccCCCcEEEEeccCCCCceEEeeeEE-----ecCCcEEEEEecCccccc-eEEEE
Confidence 58999999999999 899999999999 9999975443 233344 689999999999766687 99999
Q ss_pred ecCCeEEEEECCCC---------eeEEEEEecCCceeEEEEcCCC-CcEEEEceeeeEEeeccceeeeeeeccceeeecc
Q 016185 105 GINGIIRVIDVSNE---------KLHKSFVGHGDSINEIRTQPLK-PSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQ 174 (394)
Q Consensus 105 ~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
+.|+++.||.-... ....++......|++++|.|.. +-.+++++.
T Consensus 80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a------------------------- 134 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA------------------------- 134 (361)
T ss_pred ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc-------------------------
Confidence 99999999985211 2345566677899999999843 457888888
Q ss_pred CCcEEEEEecCCc------EEEEee----ccCCCcccEEEEEecCC--CCeeEEeeccC-----CcEEEEEccccceeec
Q 016185 175 DESVRLWNVQTGI------CILIFA----GAGGHRNEVLSVDFHPS--DIYRIASCGMD-----NTVKIWSMKEFWTYVE 237 (394)
Q Consensus 175 d~~i~vwd~~~~~------~~~~~~----~~~~~~~~i~~~~~~~~--~~~~l~s~~~d-----g~v~iwd~~~~~~~~~ 237 (394)
||.++||+....- ....+. .+..+..+..|+.|+|. ...+|+.|+.+ +.++||.......
T Consensus 135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r--- 211 (361)
T KOG2445|consen 135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR--- 211 (361)
T ss_pred CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc---
Confidence 9999999865432 122221 12246678899999982 24678888765 5899998776321
Q ss_pred cccccCCCCCCCCccccccceeeeecCCCceEEEEEe---Cc---EEEEeecCCeEEEecCCCCCC-----------CCC
Q 016185 238 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GD---FILSKSVDNEIVLWEPKMKEQ-----------SPG 300 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~---~l~~~~~dg~i~~~d~~~~~~-----------~~~ 300 (394)
.-..+..+..|+.+|+.++|. |+ .+++++.|| |+||.+..... ...
T Consensus 212 ----------------Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~ 274 (361)
T KOG2445|consen 212 ----------------KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMT 274 (361)
T ss_pred ----------------eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcc
Confidence 122355677999999999997 32 899999999 99999985321 111
Q ss_pred CCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecC
Q 016185 301 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 347 (394)
Q Consensus 301 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 347 (394)
....+.+..+..|.++|+.+.|.-.| ..|++.+.||.||+|...-
T Consensus 275 ~l~v~~vs~~~~H~~~VWrv~wNmtG--tiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 275 DLPVEKVSELDDHNGEVWRVRWNMTG--TILSSTGDDGCVRLWKANY 319 (361)
T ss_pred ccceEEeeeccCCCCceEEEEEeeee--eEEeecCCCceeeehhhhh
Confidence 22345677788999999999999999 7999999999999998754
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=9.1e-28 Score=206.72 Aligned_cols=251 Identities=20% Similarity=0.314 Sum_probs=214.8
Q ss_pred EEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCC
Q 016185 51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (394)
Q Consensus 51 ~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 129 (394)
+++.+.... +++|+..... .|...+.++... ..++ .+++|+.|..+-+|.+.....+..+.+|..
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~~-----------~hsaav~~lk~~--~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes 71 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREFV-----------AHSAAVGCLKIR--KSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHES 71 (825)
T ss_pred ccceeeeeeccccccchhhh-----------hhhhhhceeeee--ccce-eeccCCCceeeccccccCCchhheeeccCC
Confidence 344444444 7778754432 355566666664 5677 999999999999999987777788999999
Q ss_pred ceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecC
Q 016185 130 SINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 209 (394)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 209 (394)
+|.++.|++ ...+|++|+. +|+|++||++.++.++.+. +|...+.++.|+|
T Consensus 72 pIeSl~f~~-~E~Llaagsa-------------------------sgtiK~wDleeAk~vrtLt---gh~~~~~sv~f~P 122 (825)
T KOG0267|consen 72 PIESLTFDT-SERLLAAGSA-------------------------SGTIKVWDLEEAKIVRTLT---GHLLNITSVDFHP 122 (825)
T ss_pred cceeeecCc-chhhhccccc-------------------------CCceeeeehhhhhhhhhhh---ccccCcceeeecc
Confidence 999999999 7889999999 9999999999999999888 8999999999999
Q ss_pred CCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeE
Q 016185 210 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI 287 (394)
Q Consensus 210 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i 287 (394)
-+.++++|+.|+.+++||.+. ..+.....+|...+..+.|. |+++++++.|..+
T Consensus 123 -~~~~~a~gStdtd~~iwD~Rk-----------------------~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 123 -YGEFFASGSTDTDLKIWDIRK-----------------------KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred -ceEEeccccccccceehhhhc-----------------------cCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 999999999999999999997 45677888899999999998 8899999999999
Q ss_pred EEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeE
Q 016185 288 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ 367 (394)
Q Consensus 288 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 367 (394)
++||+..++ .+..|..|++.+..+.|+|.. .++++|+.|+++++||+++-+ .+.... .....|.+
T Consensus 179 ki~d~~agk---------~~~ef~~~e~~v~sle~hp~e--~Lla~Gs~d~tv~f~dletfe--~I~s~~--~~~~~v~~ 243 (825)
T KOG0267|consen 179 KIWDLTAGK---------LSKEFKSHEGKVQSLEFHPLE--VLLAPGSSDRTVRFWDLETFE--VISSGK--PETDGVRS 243 (825)
T ss_pred eeecccccc---------cccccccccccccccccCchh--hhhccCCCCceeeeeccceeE--EeeccC--CccCCcee
Confidence 999999887 788999999999999999998 689999999999999998763 444444 44678999
Q ss_pred EEeccCCCEEEEeccC
Q 016185 368 TAMSYDGSTILSCCED 383 (394)
Q Consensus 368 ~~~s~~~~~l~s~~~d 383 (394)
.+|+|++..+++|..+
T Consensus 244 ~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 244 LAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeecCCceeeecCchh
Confidence 9999999999988654
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=193.70 Aligned_cols=275 Identities=19% Similarity=0.231 Sum_probs=192.7
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEECCCCee------EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL------HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 87 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
+...|+..++.+.+|+.+.+||.|.++|...... +.....|.+.|.++.|-| +..+|++++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasG----------- 120 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASG----------- 120 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccC-----------
Confidence 3356666677777999999999999999765422 345568999999999999 8899999999
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEE--eeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceee-c
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILI--FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV-E 237 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~ 237 (394)
|.++++||+.+++.... +. +|...|.+++|.|.+...|++|+.||.+.|||++-..... +
T Consensus 121 --------------DsT~r~Wdvk~s~l~G~~~~~---GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e 183 (720)
T KOG0321|consen 121 --------------DSTIRPWDVKTSRLVGGRLNL---GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALE 183 (720)
T ss_pred --------------Cceeeeeeeccceeecceeec---ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHH
Confidence 99999999999887765 55 8999999999999888999999999999999998744211 1
Q ss_pred c-ccccCCCCC--CCCccccccceeeeecCCCce----EEEEEe-CcEEEEeec-CCeEEEecCCCCCCCCCCCcceecc
Q 016185 238 K-SFTWTDLPS--KFPTKYVQFPVFIASVHSNYV----DCNRWL-GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQ 308 (394)
Q Consensus 238 ~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i----~~~~~~-~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~ 308 (394)
. ......... ..+.......+.....+...| +.+.|- ...|++++. |+.|+|||++........+.. ...
T Consensus 184 ~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~-~~~ 262 (720)
T KOG0321|consen 184 EFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR-GSD 262 (720)
T ss_pred HHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC-ccc
Confidence 1 000000000 012222233344444555544 445664 778998888 999999999987643332222 122
Q ss_pred cccCC---CCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCe
Q 016185 309 KYPVP---ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA 385 (394)
Q Consensus 309 ~~~~~---~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 385 (394)
.+..+ ...+.++.....| .+|.+.+.|+.|++||+.......+..+.+......-..-..+||+.+|++|+.|..
T Consensus 263 ~~~t~skrs~G~~nL~lDssG--t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 263 KYPTHSKRSVGQVNLILDSSG--TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred CccCcccceeeeEEEEecCCC--CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence 23333 2234444444445 677777789999999999876555555552211222233457899999999999999
Q ss_pred EEEEEcCC
Q 016185 386 IWRWDAIP 393 (394)
Q Consensus 386 i~iwd~~~ 393 (394)
.++|.+..
T Consensus 341 ayiw~vs~ 348 (720)
T KOG0321|consen 341 AYIWVVSS 348 (720)
T ss_pred eeeeeecC
Confidence 99999875
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.4e-26 Score=185.61 Aligned_cols=258 Identities=18% Similarity=0.223 Sum_probs=203.6
Q ss_pred ceEEEEecCCc--EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEe
Q 016185 49 FNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (394)
Q Consensus 49 ~~~las~~~d~--i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 126 (394)
+++++++...+ +.+|.+.+..... +.. --.+++.+++-+ |+|. +|+.|+..|.|++|.+.+|+.+..+.+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~--q~~---v~Pg~v~al~s~--n~G~-~l~ag~i~g~lYlWelssG~LL~v~~a 121 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVV--QYI---VLPGPVHALASS--NLGY-FLLAGTISGNLYLWELSSGILLNVLSA 121 (476)
T ss_pred hhheeeecccCccccccccCchhhhh--hhc---ccccceeeeecC--CCce-EEEeecccCcEEEEEeccccHHHHHHh
Confidence 35777777665 9999987766544 211 245678788766 8998 888888999999999999999999999
Q ss_pred cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec---------CCcEEEEeeccCC
Q 016185 127 HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ---------TGICILIFAGAGG 197 (394)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~---------~~~~~~~~~~~~~ 197 (394)
|-..|+|+.|+. ++.+|+||++ ||.|.+|++- +-++++.+. .
T Consensus 122 HYQ~ITcL~fs~-dgs~iiTgsk-------------------------Dg~V~vW~l~~lv~a~~~~~~~p~~~f~---~ 172 (476)
T KOG0646|consen 122 HYQSITCLKFSD-DGSHIITGSK-------------------------DGAVLVWLLTDLVSADNDHSVKPLHIFS---D 172 (476)
T ss_pred hccceeEEEEeC-CCcEEEecCC-------------------------CccEEEEEEEeecccccCCCccceeeec---c
Confidence 999999999998 8899999999 9999999874 234566666 8
Q ss_pred CcccEEEEEecCC-CCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--
Q 016185 198 HRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 274 (394)
Q Consensus 198 ~~~~i~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 274 (394)
|.-+|+++...+. ....++|++.|.++++||+..+.. +..+ ..+..+.+++.+
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-----------------------Llti-~fp~si~av~lDpa 228 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-----------------------LLTI-TFPSSIKAVALDPA 228 (476)
T ss_pred CcceeEEEEecCCCccceEEEecCCceEEEEEecccee-----------------------eEEE-ecCCcceeEEEccc
Confidence 9999999999872 246799999999999999999532 2222 346778888888
Q ss_pred CcEEEEeecCCeEEEecCCCCCC-------CCCCCcceecccccCCCC--CeEEEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 275 GDFILSKSVDNEIVLWEPKMKEQ-------SPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 275 ~~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
+..++.|+.+|.|.+.++..... .........+..+.+|.. .|+|++++-|+ .+|++|+.||.++|||+
T Consensus 229 e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg--tlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG--TLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc--cEEEeeCCCCCEEEEec
Confidence 77999999999999988765431 111122334566777877 99999999999 79999999999999999
Q ss_pred cCCCceeeEEeccCCccCCeeEEEeccC
Q 016185 346 QSSPPVLIARLSHAQSKSPIRQTAMSYD 373 (394)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 373 (394)
.+.+ +++++. ...++|+.+.+.|-
T Consensus 307 ~S~Q--~iRtl~--~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 307 YSKQ--CIRTLQ--TSKGPVTNLQINPL 330 (476)
T ss_pred chHH--HHHHHh--hhccccceeEeecc
Confidence 9874 566655 24478999998654
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-24 Score=192.94 Aligned_cols=279 Identities=15% Similarity=0.198 Sum_probs=215.7
Q ss_pred ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC-ceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 30 ~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
.+|+..-+.|+|.| +|++|.+++.|+ |++|+.... +....+. .+...|.+++.. +. ++++|+.+
T Consensus 10 yaht~G~t~i~~d~----~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-----~~g~~v~~ia~~----s~-~f~~~s~~ 75 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP----DGEFICTCGSDGDIRKWKTNSDEEEPETID-----ISGELVSSIACY----SN-HFLTGSEQ 75 (933)
T ss_pred hhccCceEEEEEcC----CCCEEEEecCCCceEEeecCCcccCCchhh-----ccCceeEEEeec----cc-ceEEeecc
Confidence 36889999999999 789999999999 999997765 3333333 255666666543 44 89999999
Q ss_pred CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
++|.+|.+.+++.-..+...+-++.+++++. ++.+++.|+. |-.|++-++.+..
T Consensus 76 ~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsd-------------------------D~~vK~~~~~D~s 129 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSD-------------------------DTAVKLLNLDDSS 129 (933)
T ss_pred ceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecC-------------------------ceeEEEEeccccc
Confidence 9999999998877666666778899999999 8899999999 9999999999998
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecC-CC
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SN 266 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 266 (394)
....++ +|..+|.++.|+| .+++|++.+.||+|++||+.++.... .+...... ...- ..
T Consensus 130 ~~~~lr---gh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~----tl~~v~k~------------n~~~~s~ 189 (933)
T KOG1274|consen 130 QEKVLR---GHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSK----TLTGVDKD------------NEFILSR 189 (933)
T ss_pred hheeec---ccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhh----hcccCCcc------------ccccccc
Confidence 888888 8999999999999 99999999999999999999844211 11111110 0011 33
Q ss_pred ceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceeccccc--CCCCCeEEEEEeecCCcceEEEEeCCCcEEE
Q 016185 267 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFV 342 (394)
Q Consensus 267 ~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 342 (394)
.+..++|+ +..++..+.|+.|++|+....+. ...+. .+...+..+.|+|+| .|||+++.||.|.|
T Consensus 190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~---------~f~Lr~~~~ss~~~~~~wsPnG--~YiAAs~~~g~I~v 258 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL---------QFKLRDKLSSSKFSDLQWSPNG--KYIAASTLDGQILV 258 (933)
T ss_pred eeeeeeecCCCCeEEeeccCCeEEEEccCCcee---------heeecccccccceEEEEEcCCC--cEEeeeccCCcEEE
Confidence 45566776 66888889999999999988762 22222 234458999999999 69999999999999
Q ss_pred EEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEE
Q 016185 343 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 387 (394)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 387 (394)
||.++-+ .. .....|++++|.|+.+.|-.-...|...
T Consensus 259 Wnv~t~~---~~-----~~~~~Vc~~aw~p~~n~it~~~~~g~~~ 295 (933)
T KOG1274|consen 259 WNVDTHE---RH-----EFKRAVCCEAWKPNANAITLITALGTLG 295 (933)
T ss_pred Eecccch---hc-----cccceeEEEecCCCCCeeEEEeeccccc
Confidence 9999832 12 2236799999999987665544444433
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=9.9e-25 Score=187.31 Aligned_cols=326 Identities=18% Similarity=0.237 Sum_probs=243.8
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc--eeEEeeecccCCcccceEEEEEEEcCCCCcEEEEe
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 104 (394)
.+.||.+.|+++.|+| .+..|.+++.|+ +.+|...+.. -+..++.-...+.....+..-|+ |++. .+++-
T Consensus 262 ll~GHeDWV~sv~W~p----~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~--~n~~-~ii~~ 334 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHP----EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS--PNSN-VIIAH 334 (764)
T ss_pred hhcCcccceEEEEEcc----chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc--CCCC-EEEEe
Confidence 3459999999999999 677888888888 9999977542 22233221112345568888888 8888 89999
Q ss_pred ecCCeEEEEECCCC---eeEEEEEecCCceeEEEEcCCCCcEEEEcee--ee------------------EEeeccceee
Q 016185 105 GINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASK--VI------------------IISSLSLICL 161 (394)
Q Consensus 105 ~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--~i------------------~~~~~~~~~~ 161 (394)
+..|-.++|..++. .....+.+|.+.|.+++|.| .+.+|++.+. .= +++-....|+
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred cccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 99999999983332 23445669999999999999 7778888775 11 1111233555
Q ss_pred eeee-ccceeeeccCCcEEEEEecC----------C----------------------cEEE------------Eeec--
Q 016185 162 LLFI-RSNCLRVGQDESVRLWNVQT----------G----------------------ICIL------------IFAG-- 194 (394)
Q Consensus 162 ~~~~-~~~~~~~~~d~~i~vwd~~~----------~----------------------~~~~------------~~~~-- 194 (394)
.+.+ +.+|++|+....+++|+... + +... ....
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 5555 78899999999999998641 0 0000 0000
Q ss_pred ---------------------------cCCCcccEEEEEecCCCCeeEEeeccC-----CcEEEEEccccceeecccccc
Q 016185 195 ---------------------------AGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTW 242 (394)
Q Consensus 195 ---------------------------~~~~~~~i~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~ 242 (394)
+.+|.-.|++++.+| +++++++++.. ..|++|+..+
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~----------- 561 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN----------- 561 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc-----------
Confidence 137889999999999 99999999865 4589999988
Q ss_pred CCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE
Q 016185 243 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 320 (394)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (394)
-.....+.+|.-.|+.++|+ +++|++.+.|+++.+|......... ......+.|..-|+..
T Consensus 562 ------------W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 562 ------------WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDC 624 (764)
T ss_pred ------------hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEc
Confidence 33466789999999999998 8899999999999999986543211 0133467788899999
Q ss_pred EEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccC-----CCEEEEeccCCeEEEEEcC
Q 016185 321 KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-----GSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s~~~dg~i~iwd~~ 392 (394)
.|+|+. .+++|++.|.+|++|.........+..+....+...|++++|.|- +..++.|-..|.|.+|...
T Consensus 625 sW~pde--~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 625 SWSPDE--KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccCccc--ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 999999 579999999999999998874334444344467789999999872 3478888899999999854
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.1e-25 Score=194.38 Aligned_cols=249 Identities=16% Similarity=0.172 Sum_probs=200.5
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC-eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccce
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLI 159 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~ 159 (394)
.|....+.++|. |+|. +|++++.||.|++|+.... +.-.++.-+...|.+++... +.|++|+.
T Consensus 11 aht~G~t~i~~d--~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~---------- 74 (933)
T KOG1274|consen 11 AHTGGLTLICYD--PDGE-FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSE---------- 74 (933)
T ss_pred hccCceEEEEEc--CCCC-EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeec----------
Confidence 567777888887 9999 9999999999999997665 33444444778888888754 58999998
Q ss_pred eeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccc
Q 016185 160 CLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS 239 (394)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 239 (394)
+++|.+|.+..++.-..+. ..+-++++++++- +|++++.|+.|-.|++.++.+
T Consensus 75 ---------------~~tv~~y~fps~~~~~iL~---Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D-------- 127 (933)
T KOG1274|consen 75 ---------------QNTVLRYKFPSGEEDTILA---RFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDD-------- 127 (933)
T ss_pred ---------------cceEEEeeCCCCCccceee---eeeccceEEEEec-CCcEEEeecCceeEEEEeccc--------
Confidence 9999999999887665554 4677899999998 999999999999999999998
Q ss_pred cccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCC-CCC
Q 016185 240 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECD 316 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (394)
......+.+|..+|.++.|+ +++|++.+.||.|++||+.++.......... ...... ...
T Consensus 128 ---------------~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~--k~n~~~~s~i 190 (933)
T KOG1274|consen 128 ---------------SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD--KDNEFILSRI 190 (933)
T ss_pred ---------------cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC--ccccccccce
Confidence 44577889999999999998 7899999999999999999876321111111 111111 446
Q ss_pred eEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 317 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 317 i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+..++|+|++ ..++..+.|+.|++|+....+. ...+....+...+..+.|+|+|+|||+++.||.|-|||+++
T Consensus 191 ~~~~aW~Pk~--g~la~~~~d~~Vkvy~r~~we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 191 CTRLAWHPKG--GTLAVPPVDNTVKVYSRKGWEL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeeeeecCCC--CeEEeeccCCeEEEEccCCcee--heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 7889999998 5788888899999999998854 44444335556699999999999999999999999999874
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=3.4e-25 Score=177.11 Aligned_cols=253 Identities=19% Similarity=0.313 Sum_probs=193.7
Q ss_pred eccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC----------------ceeEEeeecccCCcccceEEEEE
Q 016185 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----------------GVIAALQSYVDEDKEESFYTVSW 91 (394)
Q Consensus 29 ~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~----------------~~~~~~~~~~~~~~~~~v~~~~~ 91 (394)
.-.|.+.++.+.-++.. +..+.|+=+..+ |.||++... +++.++ ..|...=+.++|
T Consensus 147 ~i~h~g~~NRvr~~~~~--~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-----~ghk~EGy~LdW 219 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLG--NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-----NGHKGEGYGLDW 219 (440)
T ss_pred ccccccccceeeecccC--CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-----cccCccceeeec
Confidence 35788899999988732 345666667777 999998531 122222 367788899999
Q ss_pred EEcCCCCcEEEEeecCCeEEEEECCCCee---EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccc
Q 016185 92 ACNVDGIPFLVAGGINGIIRVIDVSNEKL---HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSN 168 (394)
Q Consensus 92 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~ 168 (394)
++...|. |++|..-+.|++|...++.- ...+.+|+..|..++|+|.....|++||-
T Consensus 220 Sp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~------------------- 278 (440)
T KOG0302|consen 220 SPIKTGR--LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC------------------- 278 (440)
T ss_pred ccccccc--cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec-------------------
Confidence 9666674 99999999999999888753 24566899999999999988899999999
Q ss_pred eeeeccCCcEEEEEecCCc---EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCC
Q 016185 169 CLRVGQDESVRLWNVQTGI---CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 245 (394)
Q Consensus 169 ~~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 245 (394)
||+|+|||++.+. ++.. + .|.+.|+.|.|+. +..+|++|+.||+++|||+++.+.
T Consensus 279 ------DgsIrIWDiRs~~~~~~~~~-k---Ah~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~----------- 336 (440)
T KOG0302|consen 279 ------DGSIRIWDIRSGPKKAAVST-K---AHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS----------- 336 (440)
T ss_pred ------CceEEEEEecCCCccceeEe-e---ccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC-----------
Confidence 9999999999883 3332 3 7999999999998 666999999999999999999542
Q ss_pred CCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCC------CCC----CcceecccccC
Q 016185 246 PSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQS------PGE----GTADILQKYPV 312 (394)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~------~~~----~~~~~~~~~~~ 312 (394)
..|+..++.|..+|++|.|+ ...+++++.|.+|.+||+...... ... .+.+++....+
T Consensus 337 ---------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG 407 (440)
T KOG0302|consen 337 ---------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG 407 (440)
T ss_pred ---------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc
Confidence 46899999999999999998 668999999999999999765321 000 11222222222
Q ss_pred CCCCeEEEEEeecCCcceEEEEeCCCcEEEE
Q 016185 313 PECDIWFIKFSCDFHYNAAAIGNREGKIFVW 343 (394)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iw 343 (394)
...+..+.|++.-+ .++++.+.|| +.||
T Consensus 408 -Qke~KevhWH~QiP-G~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 408 -QKEVKEVHWHRQIP-GLLVSTAIDG-FNVF 435 (440)
T ss_pred -hhHhhhheeccCCC-CeEEEecccc-eeEE
Confidence 23577788998876 4788888888 4444
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1e-24 Score=169.06 Aligned_cols=214 Identities=21% Similarity=0.290 Sum_probs=174.1
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCe------e----EE-----EEEecCCceeEEEEcCCCCcEEE
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK------L----HK-----SFVGHGDSINEIRTQPLKPSLVV 145 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~----~~-----~~~~~~~~v~~~~~~~~~~~~l~ 145 (394)
.|.+.|+.+.+.+ ..|+ ++++|+.||.|.+||+++.. . +. .-.+|.-.|.++.|.|.+..++.
T Consensus 41 ~HgGsvNsL~id~-tegr-ymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 41 PHGGSVNSLQIDL-TEGR-YMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred cCCCccceeeecc-ccce-EEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 5778888888873 3677 99999999999999997542 0 11 11257788999999999999999
Q ss_pred EceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCC--CCeeEEeeccCCc
Q 016185 146 SASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS--DIYRIASCGMDNT 223 (394)
Q Consensus 146 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~s~~~dg~ 223 (394)
+++. |.+++|||.++-+....|+ .++.|++-+++|. ...++++|..|-+
T Consensus 119 ssSF-------------------------DhtlKVWDtnTlQ~a~~F~----me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 119 SSSF-------------------------DHTLKVWDTNTLQEAVDFK----MEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred cccc-------------------------cceEEEeecccceeeEEee----cCceeehhhcChhhhcceEEEEecCCCc
Confidence 9999 9999999999999888887 7889999999982 3568889999999
Q ss_pred EEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCc---EEEEeecCCeEEEecCCCCCCC--
Q 016185 224 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD---FILSKSVDNEIVLWEPKMKEQS-- 298 (394)
Q Consensus 224 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~-- 298 (394)
|++.|+.+ ......+.+|...|.++.|+++ .|++|+.||.|++||++...-.
T Consensus 170 VrLCDi~S-----------------------Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~ 226 (397)
T KOG4283|consen 170 VRLCDIAS-----------------------GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFR 226 (397)
T ss_pred EEEEeccC-----------------------CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeE
Confidence 99999999 4457789999999999999933 7889999999999999865210
Q ss_pred ---CCC-CcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCc
Q 016185 299 ---PGE-GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 350 (394)
Q Consensus 299 ---~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 350 (394)
... .....++.-..|.+.+..++|+.++ .++++.+.|..+++|+..+++.
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~--~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA--RYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecccc--hhhhhccCccceEEeecccCcc
Confidence 000 1122344456788899999999999 7899999999999999988753
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=9.9e-25 Score=180.53 Aligned_cols=269 Identities=14% Similarity=0.208 Sum_probs=200.0
Q ss_pred eEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCe---e--EEEE
Q 016185 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---L--HKSF 124 (394)
Q Consensus 50 ~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~--~~~~ 124 (394)
++.+..+.|.+++||....+....+..+..+ | .++.++|. ......+++.+.|..+++|.- .++ . +...
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~-p--g~~s~~w~--~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~ 77 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAE-P--GDFSFNWQ--RRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKL 77 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCC-C--cceeeecc--ccceEEEeecCCceeEEEecc-cCCCCccceeecc
Confidence 4666667778999998876655555544322 2 38888887 444324445567888999973 333 1 2222
Q ss_pred EecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEE
Q 016185 125 VGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLS 204 (394)
Q Consensus 125 ~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~ 204 (394)
.+. .-.|++... ...++++|+. .+.|+|||++...+.+.++ +|+..|++
T Consensus 78 ~gd--~~~Cv~~~s-~S~y~~sgG~-------------------------~~~Vkiwdl~~kl~hr~lk---dh~stvt~ 126 (673)
T KOG4378|consen 78 TGD--NAFCVACAS-QSLYEISGGQ-------------------------SGCVKIWDLRAKLIHRFLK---DHQSTVTY 126 (673)
T ss_pred ccc--hHHHHhhhh-cceeeeccCc-------------------------CceeeehhhHHHHHhhhcc---CCcceeEE
Confidence 222 334444444 3368888888 9999999999766777777 89999999
Q ss_pred EEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecC-CCceEEEEEe---CcEEEE
Q 016185 205 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL---GDFILS 280 (394)
Q Consensus 205 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~---~~~l~~ 280 (394)
+.++. ...+|++++..|.|.+..+.++.. ...+... ...|.-+.|+ ..+|.+
T Consensus 127 v~YN~-~DeyiAsvs~gGdiiih~~~t~~~-----------------------tt~f~~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 127 VDYNN-TDEYIASVSDGGDIIIHGTKTKQK-----------------------TTTFTIDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred EEecC-CcceeEEeccCCcEEEEecccCcc-----------------------ccceecCCCCeEEEeecccccceeeEe
Confidence 99998 888999999999999999998432 2222222 2335567776 347888
Q ss_pred eecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCC
Q 016185 281 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 360 (394)
Q Consensus 281 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (394)
++.+|.|.+||.....+ ...-...|..+...++|+|..+ .+|++.+.|..|.+||..... ....+..
T Consensus 183 asd~G~VtlwDv~g~sp--------~~~~~~~HsAP~~gicfspsne-~l~vsVG~Dkki~~yD~~s~~--s~~~l~y-- 249 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSP--------IFHASEAHSAPCRGICFSPSNE-ALLVSVGYDKKINIYDIRSQA--STDRLTY-- 249 (673)
T ss_pred eccCCeEEEEeccCCCc--------ccchhhhccCCcCcceecCCcc-ceEEEecccceEEEeeccccc--ccceeee--
Confidence 99999999999987753 4455667888999999999987 789999999999999998764 3333332
Q ss_pred ccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 361 SKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 361 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
..+...++|+++|.+|+.|+..|.|+.||++.
T Consensus 250 -~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 250 -SHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred -cCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 25799999999999999999999999999974
No 145
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.5e-25 Score=193.83 Aligned_cols=205 Identities=16% Similarity=0.288 Sum_probs=166.2
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
+|.+.|..++|+ .++ +|++++.|.+|++|++...++++.|. |.+.|+|++|+|.|.+++++|+-
T Consensus 367 GHt~DILDlSWS--Kn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSL----------- 430 (712)
T KOG0283|consen 367 GHTADILDLSWS--KNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSL----------- 430 (712)
T ss_pred ccchhheecccc--cCC--eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccc-----------
Confidence 799999999998 544 89999999999999999999999998 99999999999999999999999
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
|+.|+||++...+...-.. -..-|++++|.| +|+..+.|+.+|.+++|+....+......+
T Consensus 431 --------------D~KvRiWsI~d~~Vv~W~D----l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 431 --------------DGKVRLWSISDKKVVDWND----LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred --------------ccceEEeecCcCeeEeehh----hhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9999999997766554433 558899999999 999999999999999999998654332222
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCC--C
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE--C 315 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~ 315 (394)
.... - .-..|. .|+.+.|. .+.+++.+.|..|+|||.+... ++.++++.. .
T Consensus 492 ~~~~-------------~-Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~---------lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 492 RLHN-------------K-KKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD---------LVHKFKGFRNTS 547 (712)
T ss_pred eecc-------------C-ccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh---------hhhhhcccccCC
Confidence 1111 0 111233 79999987 4457788999999999997665 566666533 2
Q ss_pred CeEEEEEeecCCcceEEEEeCCCcEEEEEec
Q 016185 316 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 316 ~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (394)
.-....|+.+| .+++++++|..|++|++.
T Consensus 548 SQ~~Asfs~Dg--k~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 548 SQISASFSSDG--KHIVSASEDSWVYIWKND 576 (712)
T ss_pred cceeeeEccCC--CEEEEeecCceEEEEeCC
Confidence 23467889999 699999999999999974
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.8e-26 Score=198.80 Aligned_cols=236 Identities=19% Similarity=0.298 Sum_probs=204.7
Q ss_pred eeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee
Q 016185 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (394)
Q Consensus 27 ~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 105 (394)
+.+..|...|.|+..-. .++.+++|+.+. +.+|.+.+-..+..+. .|+.+|.++.|. ++.. +|++|+
T Consensus 22 ~~~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-----~hespIeSl~f~--~~E~-Llaags 89 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGKPNAITSLT-----GHESPIESLTFD--TSER-LLAAGS 89 (825)
T ss_pred hhhhhhhhhhceeeeec----cceeeccCCCceeeccccccCCchhheee-----ccCCcceeeecC--cchh-hhcccc
Confidence 34567899999998843 689999999998 8899987766666655 799999999988 6676 999999
Q ss_pred cCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC
Q 016185 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT 185 (394)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~ 185 (394)
.+|+|++||++.++.++++.+|...+.++.|+| -+.+.++|+. |..+++||.+.
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gSt-------------------------dtd~~iwD~Rk 143 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGST-------------------------DTDLKIWDIRK 143 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccc-------------------------cccceehhhhc
Confidence 999999999999999999999999999999999 7788899999 99999999998
Q ss_pred CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 186 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 186 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
..+.+.+. +|...+..+.|.| +|.++++++.|.++++||+..++ .+..+..|.
T Consensus 144 ~Gc~~~~~---s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk-----------------------~~~ef~~~e 196 (825)
T KOG0267|consen 144 KGCSHTYK---SHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGK-----------------------LSKEFKSHE 196 (825)
T ss_pred cCceeeec---CCcceeEEEeecC-CCceeeccCCcceeeeecccccc-----------------------ccccccccc
Confidence 88999998 7999999999999 99999999999999999998843 456777888
Q ss_pred CceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCC
Q 016185 266 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 338 (394)
Q Consensus 266 ~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 338 (394)
..+.++.|+ .-++++|+.|+++++||+++.+ .+.........|.+.+|.|++ ..+++|..+.
T Consensus 197 ~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe---------~I~s~~~~~~~v~~~~fn~~~--~~~~~G~q~s 260 (825)
T KOG0267|consen 197 GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE---------VISSGKPETDGVRSLAFNPDG--KIVLSGEQIS 260 (825)
T ss_pred ccccccccCchhhhhccCCCCceeeeeccceeE---------EeeccCCccCCceeeeecCCc--eeeecCchhh
Confidence 888888887 4478899999999999999765 555555567789999999999 5777776543
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-24 Score=169.42 Aligned_cols=244 Identities=14% Similarity=0.212 Sum_probs=183.6
Q ss_pred eEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeee
Q 016185 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFI 165 (394)
Q Consensus 86 v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~ 165 (394)
..++.|+ +.|. +||+|+.||.|.|||+.+...-+.+.+|..+|.+++|++ +++.|+++|.
T Consensus 26 a~~~~Fs--~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~---------------- 85 (405)
T KOG1273|consen 26 AECCQFS--RWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSR---------------- 85 (405)
T ss_pred cceEEec--cCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecC----------------
Confidence 3445554 9999 999999999999999999998899999999999999999 8899999999
Q ss_pred ccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCC
Q 016185 166 RSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 245 (394)
Q Consensus 166 ~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 245 (394)
|..|.+||+..|.+++.++ ..++|....|+|.+.+..++.-.+..-.+-++..++...-..
T Consensus 86 ---------D~si~lwDl~~gs~l~rir----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~------ 146 (405)
T KOG1273|consen 86 ---------DWSIKLWDLLKGSPLKRIR----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK------ 146 (405)
T ss_pred ---------CceeEEEeccCCCceeEEE----ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC------
Confidence 9999999999999999998 899999999999666666666666666676766522110000
Q ss_pred CCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCC-CCeEEEEE
Q 016185 246 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKF 322 (394)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 322 (394)
.. ...... .-.+..|+ |+++++|...|.+.+||..+.+ ++..++... ..|..+.+
T Consensus 147 --d~-----d~dln~------sas~~~fdr~g~yIitGtsKGkllv~~a~t~e---------~vas~rits~~~IK~I~~ 204 (405)
T KOG1273|consen 147 --DD-----DGDLNS------SASHGVFDRRGKYIITGTSKGKLLVYDAETLE---------CVASFRITSVQAIKQIIV 204 (405)
T ss_pred --CC-----cccccc------ccccccccCCCCEEEEecCcceEEEEecchhe---------eeeeeeechheeeeEEEE
Confidence 00 000000 01112343 9999999999999999999876 566666555 67899999
Q ss_pred eecCCcceEEEEeCCCcEEEEEecC-------CCceeeEEeccCCccCCeeEEEeccCCCEEEEec-cCCeEEEEEcC
Q 016185 323 SCDFHYNAAAIGNREGKIFVWELQS-------SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAI 392 (394)
Q Consensus 323 ~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~ 392 (394)
+..+ +.|+..+.|..||.|+++. +++....++...-....-.+++||.+|.|++.++ .-..++||.-.
T Consensus 205 s~~g--~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 205 SRKG--RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred eccC--cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 9999 6999999999999999873 1222223333111223456789999999998776 44679999753
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.7e-24 Score=178.01 Aligned_cols=262 Identities=14% Similarity=0.273 Sum_probs=200.0
Q ss_pred eeEEEEEeeCCCcceEEEEe--cCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 016185 36 LYAVVFNFIDSRYFNVFATV--GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (394)
Q Consensus 36 v~~i~~sp~~~~~~~~las~--~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~v 112 (394)
+.++.|+. .+.|+++ +.|. +++|. +.|+ ..+++.... ...+.-.|++.. .... ++++|+..+.|+|
T Consensus 37 ~~s~~w~~-----~n~lvvas~~gdk~~~~~~-K~g~-~~~Vp~~~k-~~gd~~~Cv~~~--s~S~-y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 37 DFSFNWQR-----RNFLVVASMAGDKVMRIKE-KDGK-TPEVPRVRK-LTGDNAFCVACA--SQSL-YEISGGQSGCVKI 105 (673)
T ss_pred ceeeeccc-----cceEEEeecCCceeEEEec-ccCC-CCccceeec-cccchHHHHhhh--hcce-eeeccCcCceeee
Confidence 89999986 3334444 4455 78887 4443 222221111 111122233322 3335 9999999999999
Q ss_pred EECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEe
Q 016185 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIF 192 (394)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~ 192 (394)
||++...+.+.+++|+..|+++.++- ...+|++++. .|.|.|..+.++.....|
T Consensus 106 wdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~-------------------------gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSD-------------------------GGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred hhhHHHHHhhhccCCcceeEEEEecC-CcceeEEecc-------------------------CCcEEEEecccCccccce
Confidence 99998888889999999999999998 6689999999 999999999999888888
Q ss_pred eccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee-eeecCCCceEEE
Q 016185 193 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSNYVDCN 271 (394)
Q Consensus 193 ~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 271 (394)
.. +....|.-+.|+|....+|.+++.+|.|.+||+.. ..|+. ..+.|..+...|
T Consensus 160 ~~--~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g-----------------------~sp~~~~~~~HsAP~~gi 214 (673)
T KOG4378|consen 160 TI--DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-----------------------MSPIFHASEAHSAPCRGI 214 (673)
T ss_pred ec--CCCCeEEEeecccccceeeEeeccCCeEEEEeccC-----------------------CCcccchhhhccCCcCcc
Confidence 72 23456778999996677888999999999999988 33333 456799999999
Q ss_pred EEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 272 RWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 272 ~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
+|+ ..+|++.+.|..|.+||...... ...+ .-..+...++|.++| .+|+.|+..|.|..||++..
T Consensus 215 cfspsne~l~vsVG~Dkki~~yD~~s~~s---------~~~l-~y~~Plstvaf~~~G--~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYDKKINIYDIRSQAS---------TDRL-TYSHPLSTVAFSECG--TYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred eecCCccceEEEecccceEEEeecccccc---------ccee-eecCCcceeeecCCc--eEEEeecCCceEEEEecccC
Confidence 998 56999999999999999997642 2221 234578899999999 69999999999999999976
Q ss_pred CceeeEEeccCCccCCeeEEEeccCC
Q 016185 349 PPVLIARLSHAQSKSPIRQTAMSYDG 374 (394)
Q Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~s~~~ 374 (394)
+ .++..+. .|...|++++|-|..
T Consensus 283 k-~Pv~v~s--ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 283 K-APVAVRS--AHDASVTRVAFQPSP 305 (673)
T ss_pred C-CCceEee--ecccceeEEEeeecc
Confidence 4 4666666 788899999998764
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=5.3e-24 Score=164.58 Aligned_cols=267 Identities=18% Similarity=0.232 Sum_probs=203.5
Q ss_pred ccceeeeeccCccceeEEEEEeeCCCcceEEEEecCC--------cEEEEEcCCCce------eEEeeecccCCcccceE
Q 016185 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN--------RVTVYQCLEGGV------IAALQSYVDEDKEESFY 87 (394)
Q Consensus 22 ~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d--------~i~vw~~~~~~~------~~~~~~~~~~~~~~~v~ 87 (394)
.....+.|..|.+.|..++-+|. +..+|+++-.+ ++.||.+.+... +..+... +..+-+.|.
T Consensus 52 s~l~skvf~h~agEvw~las~P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L-dteavg~i~ 127 (370)
T KOG1007|consen 52 SELLSKVFFHHAGEVWDLASSPF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL-DTEAVGKIN 127 (370)
T ss_pred chhhhhhhhcCCcceehhhcCCC---CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC-CHHHhCcee
Confidence 33345566778899999999994 57788887541 277999865321 1122211 223455899
Q ss_pred EEEEEEcCCCCcEEEEeecCCeEEEEECCCCee-EEEEE-----ecCCceeEEEEcC-CCCcEEEEceeeeEEeecccee
Q 016185 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFV-----GHGDSINEIRTQP-LKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 88 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~-~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
|+.|. |++. .+++-. |..|.+|+++.+.. +..+. +|....++-+|+| .+++.+++.+
T Consensus 128 cvew~--Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~------------ 191 (370)
T KOG1007|consen 128 CVEWE--PNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS------------ 191 (370)
T ss_pred eEEEc--CCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC------------
Confidence 99999 7887 666665 88999999987754 44443 3456678889998 5677888877
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
|+++..||+++.+....+.. +|...|..+.|+|+...+|++|+.||.|++||.+..
T Consensus 192 --------------d~tl~~~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-------- 247 (370)
T KOG1007|consen 192 --------------DSTLQFWDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-------- 247 (370)
T ss_pred --------------CCcEEEEEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------
Confidence 89999999999888877774 799999999999977788999999999999999983
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCC-----------------
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPG----------------- 300 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~----------------- 300 (394)
..|+..+.+|..+|+++.|+ .+++++++.|..|.+|...+-...+.
T Consensus 248 --------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 248 --------------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE 313 (370)
T ss_pred --------------CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence 46888999999999999998 77999999999999997654321000
Q ss_pred ---CCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecC
Q 016185 301 ---EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 347 (394)
Q Consensus 301 ---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 347 (394)
......+.++..|+..|++++|+...+ -++|+-+.||++.|=.+..
T Consensus 314 r~kpL~dg~l~tydehEDSVY~~aWSsadP-WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 314 RVKPLQDGQLETYDEHEDSVYALAWSSADP-WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hcccccccccccccccccceEEEeeccCCC-eeEEEeccCceEEeecCCh
Confidence 001123456778999999999998876 4788999999998876654
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.9e-25 Score=202.22 Aligned_cols=248 Identities=14% Similarity=0.242 Sum_probs=201.1
Q ss_pred cccceEEEEEEEcCCCCc---EEEEeecCCeEEEEECCCC------eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeE
Q 016185 82 KEESFYTVSWACNVDGIP---FLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVII 152 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~---~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~ 152 (394)
....++.++|. +.|.. +|+.|..||.|.+||...- ..+.++..|.+.|..+.|++..+++|++|+.
T Consensus 63 s~~rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~--- 137 (1049)
T KOG0307|consen 63 SSNRFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD--- 137 (1049)
T ss_pred ccccceeeeec--ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC---
Confidence 45678889998 54442 5899999999999997652 3466777899999999999988889999999
Q ss_pred EeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEcccc
Q 016185 153 ISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 232 (394)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 232 (394)
||.|.|||+..-+...... .....+.|.+++|+......|++++.+|.+.|||++.
T Consensus 138 ----------------------~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~- 193 (1049)
T KOG0307|consen 138 ----------------------DGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK- 193 (1049)
T ss_pred ----------------------CCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccC-
Confidence 9999999998755444432 1135688999999986778899999999999999999
Q ss_pred ceeeccccccCCCCCCCCccccccceeeeecCCC--ceEEEEEeC---cEEEEeecCC---eEEEecCCCCCCCCCCCcc
Q 016185 233 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWLG---DFILSKSVDN---EIVLWEPKMKEQSPGEGTA 304 (394)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~---~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~ 304 (394)
.+++..+..+.. .+..+.|++ ..+++++.|. .|.+||++....
T Consensus 194 ----------------------~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass------- 244 (1049)
T KOG0307|consen 194 ----------------------KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS------- 244 (1049)
T ss_pred ----------------------CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-------
Confidence 445666655555 366788873 3566666544 599999987643
Q ss_pred eecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCC-EEEEeccC
Q 016185 305 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCED 383 (394)
Q Consensus 305 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d 383 (394)
.++.+++|...|.++.|++.+. .+|++++.|+.|.+|+.++++ .+..+. .....+..+.|+|... .++.++-|
T Consensus 245 -P~k~~~~H~~GilslsWc~~D~-~lllSsgkD~~ii~wN~~tgE--vl~~~p--~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 245 -PLKILEGHQRGILSLSWCPQDP-RLLLSSGKDNRIICWNPNTGE--VLGELP--AQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred -chhhhcccccceeeeccCCCCc-hhhhcccCCCCeeEecCCCce--EeeecC--CCCcceeeeeecCCCcchhhhheec
Confidence 6788899999999999999887 699999999999999999984 677777 4557899999999765 88899999
Q ss_pred CeEEEEEcCC
Q 016185 384 GAIWRWDAIP 393 (394)
Q Consensus 384 g~i~iwd~~~ 393 (394)
|.|.|+.+..
T Consensus 319 gkI~I~sl~~ 328 (1049)
T KOG0307|consen 319 GKISIYSLQG 328 (1049)
T ss_pred cceeeeeeec
Confidence 9999999864
No 151
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.6e-24 Score=168.62 Aligned_cols=290 Identities=17% Similarity=0.218 Sum_probs=197.8
Q ss_pred eEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEE--Ee
Q 016185 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF--VG 126 (394)
Q Consensus 50 ~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~ 126 (394)
..+|++-.++ |++||..+++.+..++ .+...++.+.|.-. ++...+.+++.||+|++||++.......+ ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-----~~~~~~N~vrf~~~-ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-----GPPATTNGVRFISC-DSPHGVISCSSDGTVRLWDIRSQAESARISWTQ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-----CCCCcccceEEecC-CCCCeeEEeccCCeEEEEEeecchhhhheeccC
Confidence 3455555555 9999999999999988 45566667777632 23347999999999999999876554443 34
Q ss_pred cC-CceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE-EEEeeccCCCcccEEE
Q 016185 127 HG-DSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC-ILIFAGAGGHRNEVLS 204 (394)
Q Consensus 127 ~~-~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~i~~ 204 (394)
+. .+..+++.+- ..+++++|.. -...+-.|.+||++..+. +..+.. .|...|++
T Consensus 115 ~~~~~f~~ld~nc-k~~ii~~GtE---------------------~~~s~A~v~lwDvR~~qq~l~~~~e--SH~DDVT~ 170 (376)
T KOG1188|consen 115 QSGTPFICLDLNC-KKNIIACGTE---------------------LTRSDASVVLWDVRSEQQLLRQLNE--SHNDDVTQ 170 (376)
T ss_pred CCCCcceEeeccC-cCCeEEeccc---------------------cccCceEEEEEEeccccchhhhhhh--hccCccee
Confidence 44 4566676654 5577777764 111277899999998776 666553 79999999
Q ss_pred EEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCc---EEEEe
Q 016185 205 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD---FILSK 281 (394)
Q Consensus 205 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~ 281 (394)
+.|+|.+.++|++|+.||.|.+||+..... ..++...-.|...|.++.|.++ .+.+-
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E--------------------eDaL~~viN~~sSI~~igw~~~~ykrI~cl 230 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNE--------------------EDALLHVINHGSSIHLIGWLSKKYKRIMCL 230 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCcc--------------------hhhHHHhhcccceeeeeeeecCCcceEEEE
Confidence 999999999999999999999999988321 2344455567888999999832 68888
Q ss_pred ecCCeEEEecCCCCCCCCCCCcceec----ccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecC---CCc-eee
Q 016185 282 SVDNEIVLWEPKMKEQSPGEGTADIL----QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS---SPP-VLI 353 (394)
Q Consensus 282 ~~dg~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~-~~~ 353 (394)
+......+|+++.+............ ++...-..-|. ..+|.......+.|+.-|...++-+.. +.. ...
T Consensus 231 TH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~ 308 (376)
T KOG1188|consen 231 THMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN--EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP 308 (376)
T ss_pred EccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee--cccCCCcceEEEeccccCceeEEEeeecccccccCcc
Confidence 99999999999987642221111100 00000001111 233444423344444366666666553 211 112
Q ss_pred EEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 354 ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 354 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
..+ +.+|..-|.++.|...+.++.|||+||.+.+|...
T Consensus 309 a~l-~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 309 AIL-QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccc-cCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 222 44688889999999889999999999999999853
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=6.5e-23 Score=165.69 Aligned_cols=305 Identities=23% Similarity=0.339 Sum_probs=207.8
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCce------eEEeeecccCCcccceEEEEEEEcCCCCcEEEEee
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV------IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 105 (394)
..+|+.+.|.+. ..+.+|||+.|. |++|-+..++. +..+... ..|...|+++.|+ |+|. +|++|+
T Consensus 13 ~~pv~s~dfq~n---~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L--s~H~~aVN~vRf~--p~ge-lLASg~ 84 (434)
T KOG1009|consen 13 HEPVYSVDFQKN---SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL--SRHTRAVNVVRFS--PDGE-LLASGG 84 (434)
T ss_pred CCceEEEEeccC---cccceecccCccceeeeeeeecCCCCCceeEEEeecc--cCCcceeEEEEEc--CCcC-eeeecC
Confidence 468999999982 344999999998 99999875432 2222222 2689999999988 9999 999999
Q ss_pred cCCeEEEEECC--------C--------CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccce
Q 016185 106 INGIIRVIDVS--------N--------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNC 169 (394)
Q Consensus 106 ~dg~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~ 169 (394)
.+|.|.+|... + ....+.+.+|...|..++|+| ++.++++++.
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~-------------------- 143 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSV-------------------- 143 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeec--------------------
Confidence 99999999865 2 123456678999999999999 8899999999
Q ss_pred eeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCC
Q 016185 170 LRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 249 (394)
Q Consensus 170 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 249 (394)
|..+++||+..|+....+. .|...+..++|.| -++++++-+.|...+.+++...+........ ..+...
T Consensus 144 -----dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~--~m~~~~ 212 (434)
T KOG1009|consen 144 -----DNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLD--IMPAKA 212 (434)
T ss_pred -----cceEEEEEeccceeEeecc---ccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeee--Eeeecc
Confidence 9999999999999999888 8999999999999 8899999999988888777663321111100 000000
Q ss_pred CccccccceeeeecCCC----ceEEEEEe--CcEEEEeec----CC-----eEEEecCCCCCCCCCCCcceecccccCCC
Q 016185 250 PTKYVQFPVFIASVHSN----YVDCNRWL--GDFILSKSV----DN-----EIVLWEPKMKEQSPGEGTADILQKYPVPE 314 (394)
Q Consensus 250 ~~~~~~~~~~~~~~~~~----~i~~~~~~--~~~l~~~~~----dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 314 (394)
.........+ -.|.+ ....++|. |.++++.+. .+ ..++|+-...+ .+...++...
T Consensus 213 ~~~~e~~s~r--LfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~--------rP~~~lp~~~ 282 (434)
T KOG1009|consen 213 FNEREGKSTR--LFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK--------RPAARLPSPK 282 (434)
T ss_pred cCCCCcceee--eeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc--------CceeecCCCC
Confidence 0000000011 11221 12233443 556665432 22 23444443322 2455666667
Q ss_pred CCeEEEEEeecC---------------Ccc-eEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEE
Q 016185 315 CDIWFIKFSCDF---------------HYN-AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 378 (394)
Q Consensus 315 ~~i~~~~~~~~~---------------~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 378 (394)
.+...++|+|-- .++ .+|.++ .+.|++||.++..+ +.... .-|-..+++++|++||..|+
T Consensus 283 k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P--~~~v~-nihy~~iTDiaws~dg~~l~ 358 (434)
T KOG1009|consen 283 KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEP--LAVVD-NIHYSAITDIAWSDDGSVLL 358 (434)
T ss_pred cceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccc--eEEEe-eeeeeeecceeecCCCcEEE
Confidence 777777777621 112 344444 56899999988654 33222 25668999999999999999
Q ss_pred EeccCCeEEEEEc
Q 016185 379 SCCEDGAIWRWDA 391 (394)
Q Consensus 379 s~~~dg~i~iwd~ 391 (394)
..|.||..-+--+
T Consensus 359 vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 359 VSSTDGFCSLVTF 371 (434)
T ss_pred EeccCCceEEEEE
Confidence 9999997655443
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=9.4e-22 Score=168.10 Aligned_cols=286 Identities=14% Similarity=0.124 Sum_probs=186.8
Q ss_pred eecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEE-EEecCCc-EEEEEcCCCceeEEeeecccCCc
Q 016185 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (394)
Q Consensus 5 a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~l-as~~~d~-i~vw~~~~~~~~~~~~~~~~~~~ 82 (394)
+++..+....+.+. ...+....+..|. .+.+++|+| +++.+ ++++.++ |++||..+++.+..+.. +
T Consensus 5 ~s~~~d~~v~~~d~--~t~~~~~~~~~~~-~~~~l~~~~----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----~ 72 (300)
T TIGR03866 5 VSNEKDNTISVIDT--ATLEVTRTFPVGQ-RPRGITLSK----DGKLLYVCASDSDTIQVIDLATGEVIGTLPS-----G 72 (300)
T ss_pred EEecCCCEEEEEEC--CCCceEEEEECCC-CCCceEECC----CCCEEEEEECCCCeEEEEECCCCcEEEeccC-----C
Confidence 44555555555433 2334555666554 467899999 56655 5666666 99999998887665542 2
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeee
Q 016185 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLL 162 (394)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~ 162 (394)
. .+..++|+ |+++.+++++..++.|++||+.+.+.+..+..+ ..+.+++|+| ++.++++++.
T Consensus 73 ~-~~~~~~~~--~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~------------- 134 (300)
T TIGR03866 73 P-DPELFALH--PNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSP-DGKIVVNTSE------------- 134 (300)
T ss_pred C-CccEEEEC--CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECC-CCCEEEEEec-------------
Confidence 2 23445555 999833345567899999999988877777633 3468899999 7777777775
Q ss_pred eeeccceeeeccCC-cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEE-eeccCCcEEEEEccccceeecccc
Q 016185 163 LFIRSNCLRVGQDE-SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 163 ~~~~~~~~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
++ .+.+||.++++....+. ....+.+++|+| ++..|+ ++..++.|++||+.+++.......
T Consensus 135 ------------~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 135 ------------TTNMAHFIDTKTYEIVDNVL----VDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred ------------CCCeEEEEeCCCCeEEEEEE----cCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeee
Confidence 54 57788998887766554 334567899999 777664 555699999999998542111100
Q ss_pred ccCCCCCCCCccccccceeeeecCCC--ceEEEEEe--CcEEE-EeecCCeEEEecCCCCCCCCCCCcceecccccCCCC
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC 315 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~--~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
.. ...+.. ....+.|+ +++++ +.+.++.+.+||+++.+ ..... .+..
T Consensus 198 ~~------------------~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~---------~~~~~-~~~~ 249 (300)
T TIGR03866 198 EI------------------PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE---------VLDYL-LVGQ 249 (300)
T ss_pred cc------------------cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc---------EEEEE-EeCC
Confidence 00 000111 12345565 66544 44557789999998765 22222 2234
Q ss_pred CeEEEEEeecCCcceEEEE-eCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEecc
Q 016185 316 DIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 372 (394)
Q Consensus 316 ~i~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 372 (394)
.+.+++|+|+++ +|+++ ..++.|++||+.+++ .+.+++. . ..++.++++|
T Consensus 250 ~~~~~~~~~~g~--~l~~~~~~~~~i~v~d~~~~~--~~~~~~~--~-~~~~~~~~~~ 300 (300)
T TIGR03866 250 RVWQLAFTPDEK--YLLTTNGVSNDVSVIDVAALK--VIKSIKV--G-RLPWGVVVRP 300 (300)
T ss_pred CcceEEECCCCC--EEEEEcCCCCeEEEEECCCCc--EEEEEEc--c-cccceeEeCC
Confidence 688999999994 66665 568999999999984 4555552 2 4568888775
No 154
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=4.4e-23 Score=162.01 Aligned_cols=282 Identities=14% Similarity=0.213 Sum_probs=208.0
Q ss_pred eeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc--------eeEEeeecccCCcccceEEEEEEE-----cCCCCcEE
Q 016185 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--------VIAALQSYVDEDKEESFYTVSWAC-----NVDGIPFL 101 (394)
Q Consensus 36 v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~l 101 (394)
...+.|+| ||..|.+-+.|. +++|++.... ..........-...+.|+..+|-. .|+-. ++
T Consensus 52 ~kgckWSP----DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~ 126 (406)
T KOG2919|consen 52 LKGCKWSP----DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LF 126 (406)
T ss_pred hccceeCC----CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-ee
Confidence 45688999 788888888877 9999985321 100111000113456788888852 25565 89
Q ss_pred EEeecCCeEEEEECCCCeeEEEEEe--cCCc---eeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 102 VAGGINGIIRVIDVSNEKLHKSFVG--HGDS---INEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 102 ~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~---v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
++.+.+.-|.+||.-+|+...++.+ |... ..+++|+| ++..|++|. ..
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy--------------------------kr 179 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY--------------------------KR 179 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc--------------------------cc
Confidence 9999999999999999998888764 4443 45899999 778888877 68
Q ss_pred cEEEEEe-cCCcEEEEeec----cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCc
Q 016185 177 SVRLWNV-QTGICILIFAG----AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 251 (394)
Q Consensus 177 ~i~vwd~-~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 251 (394)
.|+++|+ +.|+....+.. ..+..+-|.+++|+|.+...++.|+....+-||.-..
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-------------------- 239 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-------------------- 239 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC--------------------
Confidence 9999999 55543222211 1234678899999998888999999999999988877
Q ss_pred cccccceeeeecCCCceEEEEEe--CcEEEEeec-CCeEEEecCCCCCCCCCCCcceecccccCCCC-CeEEEEEeecCC
Q 016185 252 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSCDFH 327 (394)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~ 327 (394)
..|+..+.+|.+.|+-+.|. |+.|++|+. |..|..||++.... ++..+..|.. .-..|-|.-+..
T Consensus 240 ---~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~--------pv~~L~rhv~~TNQRI~FDld~~ 308 (406)
T KOG2919|consen 240 ---RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD--------PVYALERHVGDTNQRILFDLDPK 308 (406)
T ss_pred ---CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--------hhhhhhhhccCccceEEEecCCC
Confidence 66888999999999999997 888888876 78999999997654 4444444433 233455555544
Q ss_pred cceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccC
Q 016185 328 YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 383 (394)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 383 (394)
..+|++|+.||.|++||+++.. ..+..+. .+...++.++++|-=.++|+++..
T Consensus 309 ~~~LasG~tdG~V~vwdlk~~g-n~~sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 309 GEILASGDTDGSVRVWDLKDLG-NEVSVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CceeeccCCCccEEEEecCCCC-Ccccccc--cccccccceecCcccceeeeccCc
Confidence 4799999999999999998832 1233444 667889999999998888887654
No 155
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=5.5e-24 Score=176.45 Aligned_cols=236 Identities=15% Similarity=0.221 Sum_probs=195.4
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
..-|.++..+| ||+.|++|+.-. +.|||+......-..+ .. ...-..+.++.+ ||.+ +.+++..||.|.
T Consensus 465 dnyiRSckL~p----dgrtLivGGeastlsiWDLAapTprikae--lt-ssapaCyALa~s--pDak-vcFsccsdGnI~ 534 (705)
T KOG0639|consen 465 DNYIRSCKLLP----DGRTLIVGGEASTLSIWDLAAPTPRIKAE--LT-SSAPACYALAIS--PDAK-VCFSCCSDGNIA 534 (705)
T ss_pred ccceeeeEecC----CCceEEeccccceeeeeeccCCCcchhhh--cC-CcchhhhhhhcC--Cccc-eeeeeccCCcEE
Confidence 56799999999 799999999876 9999997654321111 10 122233445544 9999 999999999999
Q ss_pred EEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEE
Q 016185 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILI 191 (394)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 191 (394)
|||+.+...++.|++|.+.+.||..++ ++..|.+|+. |.+|+-||+++++.+..
T Consensus 535 vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGl-------------------------DntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 535 VWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGL-------------------------DNTVRCWDLREGRQLQQ 588 (705)
T ss_pred EEEcccceeeecccCCCCCceeEEecC-CCceeecCCC-------------------------ccceeehhhhhhhhhhh
Confidence 999999999999999999999999999 8899999999 99999999999988876
Q ss_pred eeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEE
Q 016185 192 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 271 (394)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 271 (394)
.. ....|.++..+| .+.+++.|-.++.+.+......+ ...+..|...|.++
T Consensus 589 hd----F~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~------------------------kyqlhlheScVLSl 639 (705)
T KOG0639|consen 589 HD----FSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPE------------------------KYQLHLHESCVLSL 639 (705)
T ss_pred hh----hhhhheecccCC-CccceeeecccCcEEEEecCCcc------------------------ceeecccccEEEEE
Confidence 64 788999999999 99999999999999988877632 45667799999999
Q ss_pred EEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 272 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 272 ~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
.|. |+++++.+.|..+..|...-+.. +...+ ..++|.++.++.+. +++++|+.|..-.+|.+
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtPyGas---------iFqsk-E~SsVlsCDIS~dd--kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTPYGAS---------IFQSK-ESSSVLSCDISFDD--KYIVTGSGDKKATVYEV 703 (705)
T ss_pred EecccCceeeecCchhhhhhccCccccc---------eeecc-ccCcceeeeeccCc--eEEEecCCCcceEEEEE
Confidence 997 99999999999999999876642 22222 24579999999999 79999999998888875
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=5e-23 Score=176.59 Aligned_cols=273 Identities=15% Similarity=0.229 Sum_probs=214.5
Q ss_pred ceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 016185 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (394)
Q Consensus 35 ~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd 114 (394)
.|+.++|-| ||.-|+.+.++++.+||...|..+.+++ +|++.|++++|+ .||+ .+++|+.|..|.+|+
T Consensus 14 ci~d~afkP----DGsqL~lAAg~rlliyD~ndG~llqtLK-----gHKDtVycVAys--~dGk-rFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKP----DGTQLILAAGSRLLVYDTSDGTLLQPLK-----GHKDTVYCVAYA--KDGK-RFASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECC----CCceEEEecCCEEEEEeCCCcccccccc-----cccceEEEEEEc--cCCc-eeccCCCceeEEEec
Confidence 899999999 7888888888999999999999999999 789999999999 9999 999999999999998
Q ss_pred CCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeec
Q 016185 115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAG 194 (394)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~ 194 (394)
.+-.. +-.+ .|.+.|.|+.|+| -...|++++- ...-+|....... ...+
T Consensus 82 ~klEG-~LkY-SH~D~IQCMsFNP-~~h~LasCsL--------------------------sdFglWS~~qK~V-~K~k- 130 (1081)
T KOG1538|consen 82 SKLEG-ILKY-SHNDAIQCMSFNP-ITHQLASCSL--------------------------SDFGLWSPEQKSV-SKHK- 130 (1081)
T ss_pred ccccc-eeee-ccCCeeeEeecCc-hHHHhhhcch--------------------------hhccccChhhhhH-Hhhh-
Confidence 54221 2222 5999999999999 6788999884 4567887654332 2222
Q ss_pred cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe
Q 016185 195 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 274 (394)
Q Consensus 195 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 274 (394)
....|.+.+|.. ||.+|+.|-.+|+|.+-+-.... ...+....+..++|++++|+
T Consensus 131 ---ss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEe---------------------k~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 131 ---SSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEE---------------------KVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred ---hheeEEEeeecC-CCcEEEEeccCceEEeecCCCCc---------------------ceEEeCCCCCCCCceEEEec
Confidence 456788999998 99999999999999987543311 11233334577889999997
Q ss_pred -------CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecC
Q 016185 275 -------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 347 (394)
Q Consensus 275 -------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 347 (394)
.+.+++.....++.+|.+.... +.+-+.-.-...|+.+.++| .++..|+.|+.+.+|--..
T Consensus 186 p~sg~G~~di~aV~DW~qTLSFy~LsG~~----------Igk~r~L~FdP~CisYf~NG--Ey~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 186 PSSGEGRNDILAVADWGQTLSFYQLSGKQ----------IGKDRALNFDPCCISYFTNG--EYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred CCCCCCccceEEEEeccceeEEEEeccee----------ecccccCCCCchhheeccCC--cEEEEccCCCceEEEeecC
Confidence 3488899999999999987542 22222223344588999999 6899999999999996433
Q ss_pred CCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 348 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
..+.++. .....|..++..|++++.+.|+.||+|-.|++.
T Consensus 254 ---vrLGTvg--~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 254 ---VRLGTVG--EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ---eEEeecc--ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 4555555 455789999999999999999999999998863
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=3.3e-23 Score=176.64 Aligned_cols=118 Identities=20% Similarity=0.310 Sum_probs=97.5
Q ss_pred eEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEE
Q 016185 268 VDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 344 (394)
Q Consensus 268 i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd 344 (394)
|+.+.|+ ...|++++.||.|++|.+..+..... .......+..|...|+++.|+|-.. ..|++++.|.+|++||
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--~~tPe~~lt~h~eKI~slRfHPLAa-dvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--EMTPEKILTIHGEKITSLRFHPLAA-DVLAVASYDSTIELWD 706 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcc--cCCcceeeecccceEEEEEecchhh-hHhhhhhccceeeeee
Confidence 4456665 56899999999999999987643221 2224456778889999999999776 6899999999999999
Q ss_pred ecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 345 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
+.+.. ...++. +|.+.|.+++|||||+.+|+.+.||+|+||+-+
T Consensus 707 l~~~~--~~~~l~--gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 707 LANAK--LYSRLV--GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred hhhhh--hhheec--cCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence 99884 455666 999999999999999999999999999999864
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.6e-24 Score=194.04 Aligned_cols=255 Identities=15% Similarity=0.244 Sum_probs=204.5
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCC---CceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCC
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE---GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 108 (394)
...-+.++|.+..++...+||.|.+|| |.+||... +.....+... ..|.+.|..+.|. +....+||+|+.||
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~--~~h~G~V~gLDfN--~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK--SKHTGPVLGLDFN--PFQGNLLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh--cccCCceeeeecc--ccCCceeeccCCCC
Confidence 456789999983322224689999999 99999876 3333333322 2799999998887 76666999999999
Q ss_pred eEEEEECCCCeeEEEEE--ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC
Q 016185 109 IIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG 186 (394)
Q Consensus 109 ~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~ 186 (394)
.|.|||+...+.-.++. ...+.|.+++|+.....+|++++. +|.+.|||++..
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~-------------------------sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP-------------------------SGRAVIWDLRKK 194 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC-------------------------CCCceeccccCC
Confidence 99999998754433332 245689999999988889999999 999999999998
Q ss_pred cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC---cEEEEEccccceeeccccccCCCCCCCCccccccceeeeec
Q 016185 187 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 263 (394)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (394)
+.+-.+... .....+..++|+|++...+++++.|. .|.+||+|.. ..|++.+++
T Consensus 195 ~pii~ls~~-~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----------------------ssP~k~~~~ 251 (1049)
T KOG0307|consen 195 KPIIKLSDT-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----------------------SSPLKILEG 251 (1049)
T ss_pred CcccccccC-CCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----------------------CCchhhhcc
Confidence 877776621 11245889999997777888887764 5999999983 346778899
Q ss_pred CCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcE
Q 016185 264 HSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 340 (394)
Q Consensus 264 ~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 340 (394)
|...|.++.|+ ..++++++.|++|.+|+.++++ .+..+......+..+.|+|... ..+++++-||.|
T Consensus 252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE---------vl~~~p~~~nW~fdv~w~pr~P-~~~A~asfdgkI 321 (1049)
T KOG0307|consen 252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE---------VLGELPAQGNWCFDVQWCPRNP-SVMAAASFDGKI 321 (1049)
T ss_pred cccceeeeccCCCCchhhhcccCCCCeeEecCCCce---------EeeecCCCCcceeeeeecCCCc-chhhhheeccce
Confidence 99999999998 4799999999999999999987 7888888888999999999886 589999999999
Q ss_pred EEEEecCCC
Q 016185 341 FVWELQSSP 349 (394)
Q Consensus 341 ~iwd~~~~~ 349 (394)
.||.+....
T Consensus 322 ~I~sl~~~~ 330 (1049)
T KOG0307|consen 322 SIYSLQGTD 330 (1049)
T ss_pred eeeeeecCC
Confidence 999998754
No 159
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.91 E-value=1.3e-21 Score=151.54 Aligned_cols=290 Identities=16% Similarity=0.280 Sum_probs=203.8
Q ss_pred cceeEEEEEeeCCCcceEEEEecC-----CcEEEEEcC--CCceeEEeeecccCCcccceEEEEEEEcCCCC--cEEEEe
Q 016185 34 RPLYAVVFNFIDSRYFNVFATVGG-----NRVTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGI--PFLVAG 104 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las~~~-----d~i~vw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~l~s~ 104 (394)
-+++++.|+...+ ...+||.|+- ++|.|..+. +++.+..-. + .|.-+++.+-|.+++.|. .+||+.
T Consensus 45 ~~lya~~Ws~~~~-~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-f---d~~YP~tK~~wiPd~~g~~pdlLATs 119 (364)
T KOG0290|consen 45 WPLYAMNWSVRPD-KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-F---DHPYPVTKLMWIPDSKGVYPDLLATS 119 (364)
T ss_pred CceeeeccccCCC-cceeEEEeeeccccCCeeEEEEEccCCCceeccCC-C---CCCCCccceEecCCccccCcchhhcc
Confidence 5689999995322 3567888874 346665554 344332222 2 688899999999665443 245554
Q ss_pred ecCCeEEEEECCCC--ee--EEEE-----EecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccC
Q 016185 105 GINGIIRVIDVSNE--KL--HKSF-----VGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQD 175 (394)
Q Consensus 105 ~~dg~i~vwd~~~~--~~--~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d 175 (394)
+ ..+++|.+... +. ...+ ..+..++++..|+..+.+++.+.+- |
T Consensus 120 ~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi-------------------------D 172 (364)
T KOG0290|consen 120 S--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI-------------------------D 172 (364)
T ss_pred c--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc-------------------------c
Confidence 4 47999998742 11 1111 2356789999999989999999999 9
Q ss_pred CcEEEEEecCCcE---EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcc
Q 016185 176 ESVRLWNVQTGIC---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 252 (394)
Q Consensus 176 ~~i~vwd~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (394)
-+..|||++++.. ...+. +|..+|..++|.....+.|++.+.||.||+||++.....
T Consensus 173 TTCTiWdie~~~~~~vkTQLI---AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS----------------- 232 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLI---AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS----------------- 232 (364)
T ss_pred CeEEEEEEeeccccceeeEEE---ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------------
Confidence 9999999998733 33333 699999999999755689999999999999999994320
Q ss_pred ccccceeeeecCCCceEEEEEe---CcEEEEeecC-CeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCc
Q 016185 253 YVQFPVFIASVHSNYVDCNRWL---GDFILSKSVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 328 (394)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 328 (394)
..+..-.....+...++|+ .+++++-..| ..|.+.|++.... .+.+++.|...|+.++|.|...
T Consensus 233 ---TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--------pva~L~~H~a~VNgIaWaPhS~- 300 (364)
T KOG0290|consen 233 ---TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--------PVARLRNHQASVNGIAWAPHSS- 300 (364)
T ss_pred ---eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--------ceehhhcCcccccceEecCCCC-
Confidence 1111112224456667776 5678776665 4699999998654 6889999999999999999987
Q ss_pred ceEEEEeCCCcEEEEEecCCCc-eeeEEeccCCccCCeeEEEecc-CCCEEEEeccCCeEEE
Q 016185 329 NAAAIGNREGKIFVWELQSSPP-VLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWR 388 (394)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~i 388 (394)
..+++++.|..+.+||+..... .....+-.-.-.+.|+.+.|++ .+.+++.+... ++.+
T Consensus 301 ~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 301 SHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred ceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 6899999999999999986422 0111111112347899999996 46688877543 4443
No 160
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=3.7e-23 Score=178.58 Aligned_cols=250 Identities=15% Similarity=0.150 Sum_probs=198.1
Q ss_pred CccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeE
Q 016185 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (394)
Q Consensus 32 h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 110 (394)
....+.+++.|| +|++||+|...+ ++||++..-+.+..+. .|+.+|.|+.+++..-+.-+||+++.|..|
T Consensus 458 ~r~G~R~~~vSp----~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e-----AHesEilcLeyS~p~~~~kLLASasrdRlI 528 (1080)
T KOG1408|consen 458 SRFGFRALAVSP----DGQHLASGDRGGNLRVYDLQELEYTCFME-----AHESEILCLEYSFPVLTNKLLASASRDRLI 528 (1080)
T ss_pred cccceEEEEECC----CcceecccCccCceEEEEehhhhhhhhee-----cccceeEEEeecCchhhhHhhhhccCCceE
Confidence 345799999999 899999999888 9999999888777777 799999999998644444499999999999
Q ss_pred EEEECCCC-eeEEEEEecCCceeEEEEcCCCC-cEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE
Q 016185 111 RVIDVSNE-KLHKSFVGHGDSINEIRTQPLKP-SLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC 188 (394)
Q Consensus 111 ~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 188 (394)
.|||+... .+++++.+|...|+++.|.-.+. ..+++++. |+.|.+--.+....
T Consensus 529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA-------------------------DksimFr~~qk~~~ 583 (1080)
T KOG1408|consen 529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA-------------------------DKSIMFRVNQKASS 583 (1080)
T ss_pred EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccC-------------------------chhhheehhccccC
Confidence 99998754 67889999999999999976332 56777777 88876543332111
Q ss_pred EEEeec--cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCC
Q 016185 189 ILIFAG--AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 266 (394)
Q Consensus 189 ~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (394)
...+.. ..-....++.++..| +..++++++.|..|+|||+.++++. +..+.-..|.+
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~--------------------k~FKgs~~~eG 642 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQV--------------------KSFKGSRDHEG 642 (1080)
T ss_pred ceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEecccccee--------------------eeecccccCCC
Confidence 222220 001235789999999 9999999999999999999996541 11222334555
Q ss_pred ceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEE
Q 016185 267 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 344 (394)
Q Consensus 267 ~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd 344 (394)
..-.+..+ |.|+++.+.|.++.++|..+++ ++.+..+|...|+.+.|.+|- +.|++.+.||.|.||.
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgE---------cvA~m~GHsE~VTG~kF~nDC--kHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGE---------CVAQMTGHSEAVTGVKFLNDC--KHLISVSGDGCIFVWK 711 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccch---------hhhhhcCcchheeeeeecccc--hhheeecCCceEEEEE
Confidence 55555555 8899999999999999999988 789999999999999999999 6899999999999999
Q ss_pred ecC
Q 016185 345 LQS 347 (394)
Q Consensus 345 ~~~ 347 (394)
+..
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 853
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=2.4e-22 Score=158.17 Aligned_cols=263 Identities=14% Similarity=0.200 Sum_probs=198.1
Q ss_pred cCccceeEEEEEeeCCCc-ceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCC
Q 016185 31 EGKRPLYAVVFNFIDSRY-FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~~~-~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 108 (394)
.|...-+.++|+- |..+ ..++|.++.-+ |+|.|+.+++....+. +|...|+.+.+. |+..+++++++.|.
T Consensus 87 d~~Esfytcsw~y-d~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~-----ghG~sINeik~~--p~~~qlvls~SkD~ 158 (385)
T KOG1034|consen 87 DHDESFYTCSWSY-DSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR-----GHGGSINEIKFH--PDRPQLVLSASKDH 158 (385)
T ss_pred CCCcceEEEEEEe-cCCCCCeeEEeecceeEEEEEecchhhhcccee-----ccCccchhhhcC--CCCCcEEEEecCCc
Confidence 4888899999997 3332 45788888777 9999999999888888 789999999988 88777999999999
Q ss_pred eEEEEECCCCeeEEEEE---ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC
Q 016185 109 IIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT 185 (394)
Q Consensus 109 ~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~ 185 (394)
.|++|++++..++..+- +|.+.|.++.|++ ++.++++++. |.+|++|++..
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGm-------------------------Dhslk~W~l~~ 212 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGM-------------------------DHSLKLWRLNV 212 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCC-------------------------cceEEEEecCh
Confidence 99999999999998875 7999999999999 7789999999 99999999973
Q ss_pred CcEE-------------------------EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 186 GICI-------------------------LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 186 ~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
.+.. ..+....-|...|-|+.|- ++++++-+.++.|..|.....++.....
T Consensus 213 ~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~v- 288 (385)
T KOG1034|consen 213 KEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNV- 288 (385)
T ss_pred hHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhcc-
Confidence 2211 1111123467777777774 4789999999999999985432211100
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEe----CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCC
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 316 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
.+.......+..+......|+-+.|. ++.|+.|...|.+.+||++..+... .. ..........
T Consensus 289 --------kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~---~t--tl~~s~~~~t 355 (385)
T KOG1034|consen 289 --------KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK---CT--TLTHSKSGST 355 (385)
T ss_pred --------CCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc---Cc--eEEeccccce
Confidence 01111122344555666677777775 7899999999999999999876421 01 1111223457
Q ss_pred eEEEEEeecCCcceEEEEeCCCcEEEEEec
Q 016185 317 IWFIKFSCDFHYNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 317 i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (394)
|...+|+.++ .+|+...+|++|.-||..
T Consensus 356 VRQ~sfS~dg--s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 356 VRQTSFSRDG--SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeeeecccC--cEEEEEeCCCcEEEEEee
Confidence 8899999999 689999999999999864
No 162
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.91 E-value=1.7e-24 Score=189.60 Aligned_cols=287 Identities=14% Similarity=0.236 Sum_probs=225.6
Q ss_pred cccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCC
Q 016185 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (394)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (394)
-.+.++..+.|.+|..+|+|..|.. .|.++++|++|. ++||...++.++..+. +|.+.|+.++.+ .++
T Consensus 176 mvqkmk~ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et~~~lAs~r-----Ghs~ditdlavs--~~n 244 (1113)
T KOG0644|consen 176 MVQKMKNIKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMETARCLASCR-----GHSGDITDLAVS--SNN 244 (1113)
T ss_pred HHHHHHHHHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccchhhhccCC-----CCccccchhccc--hhh
Confidence 3355677788899999999999996 899999999999 9999999999999988 789999999987 556
Q ss_pred CcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCc
Q 016185 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDES 177 (394)
Q Consensus 98 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (394)
. ++++++.|..|++|.+.++.++..+.+|++.|++++|+|.. +.+. ||+
T Consensus 245 ~-~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~-------------------------dgt 293 (1113)
T KOG0644|consen 245 T-MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSD-------------------------DGT 293 (1113)
T ss_pred h-hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCC-------------------------CCc
Confidence 6 89999999999999999999999999999999999999922 6666 999
Q ss_pred EEEEEecCCcEEEEeeccC-CCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccc
Q 016185 178 VRLWNVQTGICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256 (394)
Q Consensus 178 i~vwd~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (394)
+++||.+-.-.+..-..+. ....-+-++.|.. ++.-++|++.|+.-..|.+....
T Consensus 294 ~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~----------------------- 349 (1113)
T KOG0644|consen 294 CRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLA----------------------- 349 (1113)
T ss_pred eEeccccccccccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhh-----------------------
Confidence 9999987211111100000 1234566677776 78889999999999999877621
Q ss_pred ceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEE
Q 016185 257 PVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 333 (394)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 333 (394)
.+...+.-+.++ ..+.+++-.+-.+++|++.++. .+....+|...+..+.++|-.. ....+
T Consensus 350 ------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---------l~H~l~ghsd~~yvLd~Hpfn~-ri~ms 413 (1113)
T KOG0644|consen 350 ------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---------LLHNLMGHSDEVYVLDVHPFNP-RIAMS 413 (1113)
T ss_pred ------hhccceEEEeccccccccceeeeeeeEeeeeecccch---------hhhhhcccccceeeeeecCCCc-Hhhhh
Confidence 111111111111 3566777788899999999886 5777788899999999999876 67788
Q ss_pred EeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 334 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
++.||...|||+..+.+...... +| ..+..-+||+||..++....-|.++|...
T Consensus 414 ag~dgst~iwdi~eg~pik~y~~---gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHYFI---GH-GKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred ccCCCceEeeecccCCcceeeec---cc-ceeeccccCCCCceEecCCCCCceEEecc
Confidence 99999999999999865544442 44 56777899999999998888888888754
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=4e-22 Score=170.13 Aligned_cols=187 Identities=17% Similarity=0.209 Sum_probs=141.2
Q ss_pred ccCCcEEEEEecCCc-E----EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCC
Q 016185 173 GQDESVRLWNVQTGI-C----ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 247 (394)
Q Consensus 173 ~~d~~i~vwd~~~~~-~----~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 247 (394)
+..|.|-||+++... . +..+ -....|+.+.|+|-|...|++++.||.|++|.+..+..
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l----~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl------------- 662 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGL----FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL------------- 662 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccccc----ccCceeeecccCCCChHHeeecccCceEEEEEeccCCC-------------
Confidence 445666666665321 1 1112 14567999999998899999999999999999987321
Q ss_pred CCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEee
Q 016185 248 KFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 324 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 324 (394)
......|...+..|...|+++.|+ .+.|++++.|-+|++||+++.+ ...++.+|...|..++|+|
T Consensus 663 ---~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~---------~~~~l~gHtdqIf~~AWSp 730 (1012)
T KOG1445|consen 663 ---PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK---------LYSRLVGHTDQIFGIAWSP 730 (1012)
T ss_pred ---CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh---------hhheeccCcCceeEEEECC
Confidence 111234667889999999999998 7899999999999999999887 5678899999999999999
Q ss_pred cCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCC----eEEEEEcC
Q 016185 325 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG----AIWRWDAI 392 (394)
Q Consensus 325 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~ 392 (394)
+| +.+|+.+.||+|++|+.++.+. .+..-.. .-...--.+.|.-||+++++.+.|. .|.+||..
T Consensus 731 dG--r~~AtVcKDg~~rVy~Prs~e~-pv~Eg~g-pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 731 DG--RRIATVCKDGTLRVYEPRSREQ-PVYEGKG-PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CC--cceeeeecCceEEEeCCCCCCC-ccccCCC-CccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 99 6999999999999999988752 3333221 0112223467777999998887664 46677654
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.2e-22 Score=165.01 Aligned_cols=253 Identities=12% Similarity=0.107 Sum_probs=192.9
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC----eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeec
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSL 156 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~ 156 (394)
.+.+.|++++|.+..+-+ ++++|..-|.|-+||+.+. .-+..+..|..+|.++.|+|.+...+++.|.
T Consensus 184 v~~~Rit~l~fHPt~~~~-lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy------- 255 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRK-LVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY------- 255 (498)
T ss_pred ecccceEEEEecccCcce-EEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc-------
Confidence 567899999999655555 9999999999999999522 2355667899999999999988889999999
Q ss_pred cceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceee
Q 016185 157 SLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV 236 (394)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 236 (394)
||+|+.-|++.+..-..+.. ......+.++.|+. +...++.+..=|...+||+++...
T Consensus 256 ------------------DGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s-- 313 (498)
T KOG4328|consen 256 ------------------DGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGS-- 313 (498)
T ss_pred ------------------CceeeeeeecchhhHHHhhc-CccceeeeeccccC-CCccEEEeecccceEEEEeecCCc--
Confidence 99999999987654333331 12456678888988 666677777777999999999432
Q ss_pred ccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCC
Q 016185 237 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 313 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
....+..|...|.+|+++ +.++++++.|++.+|||++....... ++-..-.|
T Consensus 314 --------------------~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~H 368 (498)
T KOG4328|consen 314 --------------------EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPH 368 (498)
T ss_pred --------------------cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccc
Confidence 244566788899999998 67999999999999999997653221 12333457
Q ss_pred CCCeEEEEEeecCCcceEEEEeCCCcEEEEEec----CCCceeeEEeccCCcc-C--CeeEEEeccCCCEEEEeccCCeE
Q 016185 314 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ----SSPPVLIARLSHAQSK-S--PIRQTAMSYDGSTILSCCEDGAI 386 (394)
Q Consensus 314 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~-~--~v~~~~~s~~~~~l~s~~~dg~i 386 (394)
...|.++.|||.+. .|++.+.|..|+|||.. ..+ ....+.|.... . .....+|.|+..++++|-.-..|
T Consensus 369 rrsV~sAyFSPs~g--tl~TT~~D~~IRv~dss~~sa~~~--p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~I 444 (498)
T KOG4328|consen 369 RRSVNSAYFSPSGG--TLLTTCQDNEIRVFDSSCISAKDE--PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPI 444 (498)
T ss_pred cceeeeeEEcCCCC--ceEeeccCCceEEeecccccccCC--ccceeeccCcccccccchhheeCCCccEEEEeccCcce
Confidence 88999999999994 59999999999999984 222 33444432211 1 23346899999999999888888
Q ss_pred EEEEcC
Q 016185 387 WRWDAI 392 (394)
Q Consensus 387 ~iwd~~ 392 (394)
-|+|-.
T Consensus 445 Dv~~~~ 450 (498)
T KOG4328|consen 445 DVFDGN 450 (498)
T ss_pred eEEcCC
Confidence 888743
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.9e-23 Score=168.67 Aligned_cols=320 Identities=15% Similarity=0.233 Sum_probs=236.7
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCc
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (394)
..+.+...|..|.+-|+.|.|+. .|..|+++++|. |.+||...+.....+.. +|...|.-..|.+..+.+
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~----~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----GH~~NvfQaKFiP~s~d~- 200 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQ----RGDVLASGSDDLQVVVWDWVSGSPKLSFES----GHCNNVFQAKFIPFSGDR- 200 (559)
T ss_pred HHhhhhhcccCCCCccceeeecc----cCceeeccCccceEEeehhhccCccccccc----ccccchhhhhccCCCCCc-
Confidence 44567778889999999999997 799999999998 99999999887666653 788888888888655666
Q ss_pred EEEEeecCCeEEEEECCCCe-e--EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 100 FLVAGGINGIIRVIDVSNEK-L--HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
-+++++.||.|++=.+.... + ...+..|.++|..++.-|+...-|.+++. |+
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge-------------------------D~ 255 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE-------------------------DA 255 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCccccccc-------------------------cc
Confidence 89999999999987765432 2 34455799999999999988899999999 99
Q ss_pred cEEEEEecCCcEEEEeeccCCCcc---cEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccc
Q 016185 177 SVRLWNVQTGICILIFAGAGGHRN---EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 253 (394)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (394)
.+.-.|++.+.....+...+.+.. ....++.+|.+.+.+++++.|-.+++||.+......... ...
T Consensus 256 ~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-----------~~~ 324 (559)
T KOG1334|consen 256 VVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-----------VLD 324 (559)
T ss_pred ceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-----------hhh
Confidence 999999998876555543334444 678999999667799999999999999999843211000 000
Q ss_pred cccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCC---cceeccc-ccCCCC--CeEEEEE-ee
Q 016185 254 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG---TADILQK-YPVPEC--DIWFIKF-SC 324 (394)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~~-~~~~~~--~i~~~~~-~~ 324 (394)
.-.|-.......-.|++++|+ +.-++++-.|-.|+++.-..+....... ....+.. +++|.. .|..+-| -|
T Consensus 325 ~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP 404 (559)
T KOG1334|consen 325 KFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP 404 (559)
T ss_pred hcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC
Confidence 001111222345569999998 5566666788899999544433211111 1122333 666653 3556654 45
Q ss_pred cCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 325 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 325 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
.. .++++|+.-|.|.||+-.+++ .+..++ +....|++|.-+|--..||++|-|..|+||--
T Consensus 405 rs--EyVvSGSDCGhIFiW~K~t~e--ii~~Me--gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 405 RS--EYVVSGSDCGHIFIWDKKTGE--IIRFME--GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cc--ceEEecCccceEEEEecchhH--HHHHhh--cccceEeccCCCCCCchhhccCCccceeeecC
Confidence 55 699999999999999998884 555566 44458999999999999999999999999965
No 166
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2e-21 Score=152.48 Aligned_cols=277 Identities=16% Similarity=0.207 Sum_probs=187.2
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCee--EEEEE--ecCCceeEEE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFV--GHGDSINEIR 135 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~--~~~~~v~~~~ 135 (394)
..-|+.......+.+..-...+|.+.|++++|+ .||+ .|++++.|+.|++|++++-.. .+.++ -.-+..+.+.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~Fs--SdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~ 139 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFS--SDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVV 139 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEc--CCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEE
Confidence 344554444444444333344899999999998 9999 999999999999999876321 11111 1122457899
Q ss_pred EcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC---cEEEEee------ccCCCcccEEEEE
Q 016185 136 TQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG---ICILIFA------GAGGHRNEVLSVD 206 (394)
Q Consensus 136 ~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~---~~~~~~~------~~~~~~~~i~~~~ 206 (394)
|.|+-..+++++-. ..++++|.+... .....+. -.+.|+-.|..+-
T Consensus 140 FapDc~s~vv~~~~-------------------------g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG 194 (420)
T KOG2096|consen 140 FAPDCKSVVVSVKR-------------------------GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG 194 (420)
T ss_pred ECCCcceEEEEEcc-------------------------CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEe
Confidence 99977777777777 788999987532 2111111 0124667777888
Q ss_pred ecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecC--CCceEEEEEeCcEEEEeecC
Q 016185 207 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH--SNYVDCNRWLGDFILSKSVD 284 (394)
Q Consensus 207 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~l~~~~~d 284 (394)
... ++.+|++++.|..|.+|+++. +. +..+... .+.-..+..+|+++++++..
T Consensus 195 iA~-~~k~imsas~dt~i~lw~lkG-q~-----------------------L~~idtnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 195 IAG-NAKYIMSASLDTKICLWDLKG-QL-----------------------LQSIDTNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred ecC-CceEEEEecCCCcEEEEecCC-ce-----------------------eeeeccccccccceeeCCCCcEEEEecCC
Confidence 776 889999999999999999985 21 1222211 12223444559999999999
Q ss_pred CeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecC-----CCceeeEEec--
Q 016185 285 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-----SPPVLIARLS-- 357 (394)
Q Consensus 285 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~-- 357 (394)
-.+++|..--.+... ......+..+.+|...|..++|+++. ..+++.+.||++++||.+- ..+..+....
T Consensus 250 pDVkVwE~~f~kdG~-fqev~rvf~LkGH~saV~~~aFsn~S--~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 250 PDVKVWEPIFTKDGT-FQEVKRVFSLKGHQSAVLAAAFSNSS--TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred CCceEEEEEeccCcc-hhhhhhhheeccchhheeeeeeCCCc--ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 999999875443211 12333567789999999999999999 6899999999999999852 1223333332
Q ss_pred cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 358 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 358 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
.....+....++.+|+|+.||.+.. ..|+++..++
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~ 361 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASED 361 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeecC-CceEEEEccc
Confidence 1122344458999999999987643 3577776543
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.8e-22 Score=158.76 Aligned_cols=298 Identities=13% Similarity=0.162 Sum_probs=212.2
Q ss_pred eeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC------ceeEEeeecccCCcccceEEEEEEEcCCCC
Q 016185 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG------GVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (394)
Q Consensus 26 ~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (394)
++.+.+|.+-|+++.||. ++++||+|++|. +++|++... +++... ...|...|++++|. ..++
T Consensus 49 qKD~~~H~GCiNAlqFS~----N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~----~~~H~SNIF~L~F~--~~N~ 118 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSH----NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM----EHPHRSNIFSLEFD--LENR 118 (609)
T ss_pred hhhhhhhccccceeeecc----CCeEEeecCCcceeeeechHHHHhhcCCCCceec----cCccccceEEEEEc--cCCe
Confidence 344578999999999998 799999999998 999998642 222222 23577899999987 6666
Q ss_pred cEEEEeecCCeEEEEECCCCeeEEEEEe--cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 99 PFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 99 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
.|++|..+++|..-|+++.+.+..+.. ..+.|+.+..+|. .+.|++.+. ++
T Consensus 119 -~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~-------------------------~~ 171 (609)
T KOG4227|consen 119 -FLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTR-------------------------AK 171 (609)
T ss_pred -eEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEec-------------------------Cc
Confidence 999999999999999999887777652 2348999999994 688888888 99
Q ss_pred cEEEEEecCCc-EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccc
Q 016185 177 SVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 255 (394)
Q Consensus 177 ~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (394)
.|.+||.+... .+..+. +.........+.|+|....+|++.+..+-+-+||.+..+..+-.--
T Consensus 172 ~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~--------------- 235 (609)
T KOG4227|consen 172 LVSFIDNRDRQNPISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRS--------------- 235 (609)
T ss_pred eEEEEeccCCCCCCceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhh---------------
Confidence 99999998655 222211 1135667889999998889999999999999999998432111000
Q ss_pred cceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceeccccc------CCCCCeEEEEEeecCC
Q 016185 256 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP------VPECDIWFIKFSCDFH 327 (394)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~ 327 (394)
-...+......-.++.|+ |..+++--....-.+||+.+... .+.++. ...+.+.+++|..+.
T Consensus 236 -~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~--------~V~k~D~N~~GY~N~~T~KS~~F~~D~- 305 (609)
T KOG4227|consen 236 -MFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC--------FVLKSDHNPNGYCNIKTIKSMTFIDDY- 305 (609)
T ss_pred -ccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc--------eeEeccCCCCcceeeeeeeeeeeecce-
Confidence 000111111112344554 66666655555556677766542 111111 122457778888776
Q ss_pred cceEEEEeCCCcEEEEEecCCC---------------------ceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeE
Q 016185 328 YNAAAIGNREGKIFVWELQSSP---------------------PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 386 (394)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~~~---------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 386 (394)
.+++|+.+-.|++|.+.... ...+..+. +|.+-++.+.|+|...+|++.+-...+
T Consensus 306 --~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~ 381 (609)
T KOG4227|consen 306 --TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSF 381 (609)
T ss_pred --eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe--cccccccceeecCCcceEeccchhhhe
Confidence 59999999999999985311 01123344 899999999999999999999999999
Q ss_pred EEEE
Q 016185 387 WRWD 390 (394)
Q Consensus 387 ~iwd 390 (394)
+||.
T Consensus 382 KlWS 385 (609)
T KOG4227|consen 382 KLWS 385 (609)
T ss_pred eccc
Confidence 9995
No 168
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=160.51 Aligned_cols=270 Identities=16% Similarity=0.206 Sum_probs=196.4
Q ss_pred cCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcce-EEEEecCCc-EEEEEcCCCceeEEeeecccCCc-c
Q 016185 7 GCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK-E 83 (394)
Q Consensus 7 g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~-~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~-~ 83 (394)
+.-++...++.-..+.-...+.+.--..+|.+..|.| +|. .+++++... .+.||+.+.+..+.-+.. ++ +
T Consensus 231 aG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p----~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~---g~e~ 303 (514)
T KOG2055|consen 231 AGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP----NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY---GVEE 303 (514)
T ss_pred ecCCCcEEEEEecCccChhheeeeeccCccceeeecC----CCceEEEecccceEEEEeeccccccccccCCC---Cccc
Confidence 3344444444333333334444444578999999999 677 788888777 999999887643322211 22 2
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeee
Q 016185 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLL 163 (394)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~ 163 (394)
..+....++ ++++ +|+..+..|.|.+....+++.+.+++ -.+.|..++|+.++ ..|+.++.
T Consensus 304 ~~~e~FeVS--hd~~-fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSds-k~l~~~~~-------------- 364 (514)
T KOG2055|consen 304 KSMERFEVS--HDSN-FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDS-KELLASGG-------------- 364 (514)
T ss_pred chhheeEec--CCCC-eEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCC-cEEEEEcC--------------
Confidence 334444444 9999 99999999999999999999999988 45789999999844 55555555
Q ss_pred eeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccE--EEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccc
Q 016185 164 FIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEV--LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 241 (394)
Q Consensus 164 ~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 241 (394)
+|.|.+||++...+++.+. ..+.| ++++.++ ++.+|++|+..|.|.|||..+...
T Consensus 365 -----------~GeV~v~nl~~~~~~~rf~----D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~------- 421 (514)
T KOG2055|consen 365 -----------TGEVYVWNLRQNSCLHRFV----DDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFA------- 421 (514)
T ss_pred -----------CceEEEEecCCcceEEEEe----ecCccceeeeeecC-CCceEEeccCcceEEEeccchhhc-------
Confidence 8999999999999999887 33433 5677778 889999999999999999877221
Q ss_pred cCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeec--CCeEEEecCCCCCCCCCCCcceecccccC---CC
Q 016185 242 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV--DNEIVLWEPKMKEQSPGEGTADILQKYPV---PE 314 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~ 314 (394)
....+|+..+..-...|+++.|+ .++|+.++. +..+++-.+.+.. ....++. .-
T Consensus 422 ----------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T---------VFsNfP~~n~~v 482 (514)
T KOG2055|consen 422 ----------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT---------VFSNFPTSNTKV 482 (514)
T ss_pred ----------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee---------eeccCCCCCCcc
Confidence 11245666666677889999998 566666654 6778888877654 2333333 23
Q ss_pred CCeEEEEEeecCCcceEEEEeCCCcEEEEEec
Q 016185 315 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 315 ~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (394)
+.++|++|+|.+ .++|.|..+|.+.+|.+.
T Consensus 483 g~vtc~aFSP~s--G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 483 GHVTCMAFSPNS--GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cceEEEEecCCC--ceEEeecCCCceeeEeec
Confidence 468999999988 599999999999999874
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=4.2e-22 Score=154.15 Aligned_cols=238 Identities=18% Similarity=0.251 Sum_probs=180.4
Q ss_pred ccceeeeec-cCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCce-eEEeeecccCCcccceEEEEEEEcCCCCc
Q 016185 22 EYRVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIP 99 (394)
Q Consensus 22 ~~~~~~~~~-~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (394)
+++....|. .+-+.|.|+.|.| ++..+|+-.++.|.+|++..+.. ...+..-....+....++-+|++..+|.
T Consensus 111 tlE~v~~Ldteavg~i~cvew~P----ns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn- 185 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEP----NSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN- 185 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcC----CCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccc-
Confidence 355556664 5667999999999 78889988877799999988776 5555544444567788899999878888
Q ss_pred EEEEeecCCeEEEEECCCCeeEEEEE-ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcE
Q 016185 100 FLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESV 178 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (394)
.+++. .|+++..||+++.+....+. .|...|..+.|+|+...+|++|++ ||.|
T Consensus 186 qv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD-------------------------dgyv 239 (370)
T KOG1007|consen 186 QVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGD-------------------------DGYV 239 (370)
T ss_pred eEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCC-------------------------CccE
Confidence 55554 47899999999887776665 788899999999988889999999 9999
Q ss_pred EEEEecCCc-EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccccc--CCCCCCCC----c
Q 016185 179 RLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW--TDLPSKFP----T 251 (394)
Q Consensus 179 ~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~----~ 251 (394)
++||.+.-+ +++.+. +|...|.++.|+|....++++|+.|..|.+|....-.......+.. ...+.... .
T Consensus 240 riWD~R~tk~pv~el~---~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k 316 (370)
T KOG1007|consen 240 RIWDTRKTKFPVQELP---GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK 316 (370)
T ss_pred EEEeccCCCccccccC---CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcc
Confidence 999998644 566666 8999999999999778899999999999999887632211111111 11111100 0
Q ss_pred cccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCC
Q 016185 252 KYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPK 293 (394)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~ 293 (394)
......+..+..|.+.|.+++|+ +=.+++-+.||++.|=...
T Consensus 317 pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 317 PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 11223455788899999999998 4488999999999886654
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.9e-21 Score=174.90 Aligned_cols=299 Identities=14% Similarity=0.163 Sum_probs=208.9
Q ss_pred ccceeEEEEEeeCCCcceEEEEecC-CcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGG-NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~-d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
..+-..+.|+| -...++++.+ +.|+|||...++.+..+.... .....|+.+.+--.-|.. ++++|+.||.|+
T Consensus 1064 ~~~pk~~~~hp----f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--~~~t~Vs~l~liNe~D~a-LlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1064 NQPPKTLKFHP----FEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--FPDTRVSDLELINEQDDA-LLLTASSDGVIR 1136 (1387)
T ss_pred CCCCceeeecC----CCceeEEcCCcceEEEEecccCceeccccCCC--CCCCccceeeeecccchh-heeeeccCceEE
Confidence 34566788888 4566777764 459999999998877766443 345678888876444555 999999999999
Q ss_pred EEECCCC-----eeEEEEEe---c----CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 112 VIDVSNE-----KLHKSFVG---H----GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 112 vwd~~~~-----~~~~~~~~---~----~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
||+--.. +.+....+ + .+.=.-+.|....+.++++|. -..|+
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--------------------------~r~IR 1190 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--------------------------VRSIR 1190 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC--------------------------eeEEE
Confidence 9974321 22322221 1 111123456664444444443 78999
Q ss_pred EEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee
Q 016185 180 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 259 (394)
Q Consensus 180 vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (394)
|||.........+.. +....|+++.-+...++.+++|..||.|++||.+.... ...+.
T Consensus 1191 IWDa~~E~~~~diP~--~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~--------------------ds~v~ 1248 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPY--GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP--------------------DSLVC 1248 (1387)
T ss_pred EEecccceeEeeccc--CCCccceeecccccCCceEEEeecCCceEEeecccCCc--------------------cccce
Confidence 999998888777763 45667888877765679999999999999999998321 23566
Q ss_pred eeecCCCc--eEEEEEe--C-cEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEE
Q 016185 260 IASVHSNY--VDCNRWL--G-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 334 (394)
Q Consensus 260 ~~~~~~~~--i~~~~~~--~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 334 (394)
....|... |..+.+. | ..+++|+.||.|++||++...... ......... -.+..+++..++.. ..+|+|
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---~~~iv~~~~-yGs~lTal~VH~ha--piiAsG 1322 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---FLTIVAHWE-YGSALTALTVHEHA--PIIASG 1322 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc---cceeeeccc-cCccceeeeeccCC--Ceeeec
Confidence 77778877 8888886 2 269999999999999999842111 111111110 12248899999998 699999
Q ss_pred eCCCcEEEEEecCCCceeeEEec--cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 335 NREGKIFVWELQSSPPVLIARLS--HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+. +.|+||++.......++... .....+.+.+++|+|-.-+||+|+.|..|.||....
T Consensus 1323 s~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred Cc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 98 99999999876432222211 112346679999999999999999999999997643
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=4.3e-21 Score=169.12 Aligned_cols=275 Identities=13% Similarity=0.067 Sum_probs=199.1
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCee--EE----EEEecCCceeE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HK----SFVGHGDSINE 133 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~----~~~~~~~~v~~ 133 (394)
+.||++.........- .-...|.+++|+ |....+|+.|..+|.|.+||+..+.. .. ....|..++..
T Consensus 224 ~~vW~~~~p~~Pe~~~-----~~~s~v~~~~f~--p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVL-----ESPSEVTCLKFC--PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA 296 (555)
T ss_pred EEEEecCCCCCceEEE-----ecCCceeEEEec--cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence 8899987663222222 245678888887 76666999999999999999987644 22 22368889999
Q ss_pred EEEcCCC-CcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeec---c------CCCcccEE
Q 016185 134 IRTQPLK-PSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAG---A------GGHRNEVL 203 (394)
Q Consensus 134 ~~~~~~~-~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~---~------~~~~~~i~ 203 (394)
+.|..+. +.-+++++. ||.|+.|+++.-........ . ......++
T Consensus 297 vvW~~~~~~~~f~s~ss-------------------------DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t 351 (555)
T KOG1587|consen 297 VVWLQNEHNTEFFSLSS-------------------------DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGAT 351 (555)
T ss_pred EEEeccCCCCceEEEec-------------------------CCcEeeeeccccccchhhccccccccccccccccccee
Confidence 9997621 134778887 99999998874332111100 0 01234689
Q ss_pred EEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEE
Q 016185 204 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILS 280 (394)
Q Consensus 204 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~ 280 (394)
+++|.+.+.+.|+.|+.+|.|..-+-.......+ ...++......|.+.|.++.++ ...+++
T Consensus 352 ~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~---------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls 416 (555)
T KOG1587|consen 352 SLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE---------------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLS 416 (555)
T ss_pred eEeeccCCCceEEEEcCCcEEEEEeccCCccccc---------------ccccccccccccCcceEeeecCCCccceeee
Confidence 9999998889999999999988744443221110 1123455677899999999997 455556
Q ss_pred eecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCC
Q 016185 281 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 360 (394)
Q Consensus 281 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (394)
++ |.++++|....... ++..+..+...+++++|||... ..++++..||.|.+||+.......+.... -
T Consensus 417 ~g-DW~vriWs~~~~~~--------Pl~~~~~~~~~v~~vaWSptrp-avF~~~d~~G~l~iWDLl~~~~~Pv~s~~--~ 484 (555)
T KOG1587|consen 417 VG-DWTVRIWSEDVIAS--------PLLSLDSSPDYVTDVAWSPTRP-AVFATVDGDGNLDIWDLLQDDEEPVLSQK--V 484 (555)
T ss_pred ec-cceeEeccccCCCC--------cchhhhhccceeeeeEEcCcCc-eEEEEEcCCCceehhhhhccccCCccccc--c
Confidence 55 99999999873322 4566666666799999999987 68999999999999999887655666655 3
Q ss_pred ccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 361 SKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 361 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+....+.+.|+++|+.|++|...|.+++|++.+
T Consensus 485 ~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 485 CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 356777888999999999999999999999863
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=3e-21 Score=155.64 Aligned_cols=229 Identities=20% Similarity=0.328 Sum_probs=170.9
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC-------eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEE
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIII 153 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~ 153 (394)
+|.++|..++|+ |-+...+|+|+.|.+|.||++..+ +++..+.+|...|.-++|+|.-.+.|++++.
T Consensus 79 GHt~~vLDi~w~--PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~---- 152 (472)
T KOG0303|consen 79 GHTAPVLDIDWC--PFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS---- 152 (472)
T ss_pred CccccccccccC--ccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC----
Confidence 799999999999 545558999999999999998654 4577889999999999999988899999998
Q ss_pred eeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccc
Q 016185 154 SSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 233 (394)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 233 (394)
|..|.+||+.+|+.+..+. |..-|+++.|+. +|.+|++.+.|.+||+||.+++.
T Consensus 153 ---------------------Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 153 ---------------------DNTVSIWNVGTGEALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred ---------------------CceEEEEeccCCceeeecC----CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCc
Confidence 9999999999999988876 999999999999 99999999999999999999943
Q ss_pred eeeccccccCCCCCCCCccccccceeeeecCCCc-eEEEEEe--CcEEEEee---cCCeEEEecCCCCCCCCCCCcceec
Q 016185 234 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY-VDCNRWL--GDFILSKS---VDNEIVLWEPKMKEQSPGEGTADIL 307 (394)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~--~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~ 307 (394)
.+....+|.+. -..+.|- +..+.+|- .+..+-+||..+.+.+. .+
T Consensus 207 -----------------------~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~------~~ 257 (472)
T KOG0303|consen 207 -----------------------VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI------AL 257 (472)
T ss_pred -----------------------EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcc------ee
Confidence 44444556553 2223332 55444432 37789999988776421 22
Q ss_pred ccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccC
Q 016185 308 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 373 (394)
Q Consensus 308 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 373 (394)
..+.. .+.|..--|.++.. .+.++|-.|+.||.|.+....+ .+.-+.......+-..+.|-|.
T Consensus 258 ~elDt-SnGvl~PFyD~dt~-ivYl~GKGD~~IRYyEit~d~P-~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 258 QELDT-SNGVLLPFYDPDTS-IVYLCGKGDSSIRYFEITNEPP-FVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEecc-CCceEEeeecCCCC-EEEEEecCCcceEEEEecCCCc-eeEEecccccCCcccccccccc
Confidence 23322 23454445566664 4556777899999999988763 3443332223345566666664
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=5.5e-22 Score=151.58 Aligned_cols=304 Identities=13% Similarity=0.094 Sum_probs=204.1
Q ss_pred ceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEE
Q 016185 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (394)
Q Consensus 24 ~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (394)
.+...|++|.+.|+++.|-. .++|.+|..-+ |.+|++.+...+..++.+ +...|+.+.-. |++ .|.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa-----~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~----g~~~it~lq~~--p~d--~l~ 71 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQA-----NERLMSGLSVGIVKMWVLQTERDLPLIRLF----GRLFITNLQSI--PND--SLD 71 (323)
T ss_pred CCeeEeccccchheehhhcc-----chhhhcccccceEEEEEeecCccchhhhhh----ccceeeceeec--CCc--chh
Confidence 34556779999999999986 44588888877 999999998887777643 45566666655 665 599
Q ss_pred EeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCC-----C---CcEEEEceeeeEEeeccceeeeeeeccceeeecc
Q 016185 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-----K---PSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQ 174 (394)
Q Consensus 103 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~---~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
+-+.|+.+.+|++.-+..+. .|.-.++++-|.+. . ..+++.-++ +.
T Consensus 72 tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~r-----------------------gs 125 (323)
T KOG0322|consen 72 TQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSR-----------------------GS 125 (323)
T ss_pred hcCCCceEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCc-----------------------cc
Confidence 99999999999997654332 23334555555431 0 012222111 00
Q ss_pred CCcEEEEEecCCcEEEEeec-cCCCcccEEEEEecCCC--CeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCc
Q 016185 175 DESVRLWNVQTGICILIFAG-AGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 251 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 251 (394)
|. +++-|......++.... ..+..+.+++..+.... .-++++|..+|.+.+||+.++...+...-
T Consensus 126 de-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~----------- 193 (323)
T KOG0322|consen 126 DE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ----------- 193 (323)
T ss_pred ch-hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-----------
Confidence 11 22333222222222211 11344567777654322 34678889999999999998532221111
Q ss_pred cccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcc
Q 016185 252 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 329 (394)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 329 (394)
..+.......|..+|.++.+. -+.=++++.+..+..|+++.... ..+.-.........+..+.+-||+ +
T Consensus 194 --~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g-----slq~~~e~~lknpGv~gvrIRpD~--K 264 (323)
T KOG0322|consen 194 --SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG-----SLQIRKEITLKNPGVSGVRIRPDG--K 264 (323)
T ss_pred --ccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC-----cccccceEEecCCCccceEEccCC--c
Confidence 112344566799999999997 34556778888899998875521 111222233344568889999999 7
Q ss_pred eEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 330 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 330 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
.+|+++.|++||||+.++.. .+..+. -|.+.|++++|+|+...+|.++.|+.|-+|++
T Consensus 265 IlATAGWD~RiRVyswrtl~--pLAVLk--yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 265 ILATAGWDHRIRVYSWRTLN--PLAVLK--YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeecccCCcEEEEEeccCC--chhhhh--hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999986 455566 77799999999999999999999999999987
No 174
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.7e-21 Score=163.88 Aligned_cols=266 Identities=14% Similarity=0.164 Sum_probs=195.0
Q ss_pred cCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCc-EEEEcee-eeEEeec
Q 016185 79 DEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASK-VIIISSL 156 (394)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~-~i~~~~~ 156 (394)
..+|++.|.+++.. |.|. +|++|+.||+|+||.+.++++++++. ..+.|.|++|+|.... +|+.+-. .+.+-+.
T Consensus 396 yrGHtg~Vr~iSvd--p~G~-wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 396 YRGHTGLVRSISVD--PSGE-WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred EeccCCeEEEEEec--CCcc-eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 34899999999887 8898 99999999999999999999999988 4568999999994433 3333222 2222222
Q ss_pred ccee--eeeeeccceeee----ccCCcEEEEEecCCc----EEEEeeccCCCcccEEEEEecCCCCeeEEeeccC---Cc
Q 016185 157 SLIC--LLLFIRSNCLRV----GQDESVRLWNVQTGI----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NT 223 (394)
Q Consensus 157 ~~~~--~~~~~~~~~~~~----~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d---g~ 223 (394)
.+-. ...+.+..|.++ ..++.+..|.-...+ -+.... .|...|..+.|+. .|.+|++...+ ..
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I---~~~k~i~~vtWHr-kGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI---KHPKSIRQVTWHR-KGDYLATVMPDSGNKS 547 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE---ecCCccceeeeec-CCceEEEeccCCCcce
Confidence 1111 111112223333 247788899765221 122222 4999999999999 99999987654 56
Q ss_pred EEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCC
Q 016185 224 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 301 (394)
Q Consensus 224 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~ 301 (394)
|.|+++.... ....+....+.|.++.|+ ..+|++++ -..|++||+...+
T Consensus 548 VliHQLSK~~-----------------------sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe----- 598 (733)
T KOG0650|consen 548 VLIHQLSKRK-----------------------SQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE----- 598 (733)
T ss_pred EEEEeccccc-----------------------ccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHH-----
Confidence 8899988732 222333445677888887 33555544 5689999999765
Q ss_pred CcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEec
Q 016185 302 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC 381 (394)
Q Consensus 302 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 381 (394)
.+.++......|..++.+|.| ..|+.|+.|+.+..||+.-.. +..+++. .|...+++++|++.-.++++|+
T Consensus 599 ----lvKkL~tg~kwiS~msihp~G--Dnli~gs~d~k~~WfDldlss-kPyk~lr--~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 599 ----LVKKLLTGSKWISSMSIHPNG--DNLILGSYDKKMCWFDLDLSS-KPYKTLR--LHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred ----HHHHHhcCCeeeeeeeecCCC--CeEEEecCCCeeEEEEcccCc-chhHHhh--hhhhhhhhhhhccccceeeeec
Confidence 677777777889999999999 579999999999999998764 3556666 7889999999999999999999
Q ss_pred cCCeEEEEE
Q 016185 382 EDGAIWRWD 390 (394)
Q Consensus 382 ~dg~i~iwd 390 (394)
.||.+.|+.
T Consensus 670 dDgtv~Vfh 678 (733)
T KOG0650|consen 670 DDGTVIVFH 678 (733)
T ss_pred CCCcEEEEe
Confidence 999999985
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=3.7e-21 Score=151.27 Aligned_cols=239 Identities=17% Similarity=0.238 Sum_probs=182.8
Q ss_pred ccceeEEEEEe---eCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceE-EEEEEEcCCCCcEEEEeecC
Q 016185 33 KRPLYAVVFNF---IDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY-TVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 33 ~~~v~~i~~sp---~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~s~~~d 107 (394)
...|+...|-| .+.++.+++|+.+.+. |++||.-+|+....+..+. |.+.+. +.++.|+|||. .|++|. .
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~yd---h~de~taAhsL~Fs~DGe-qlfaGy-k 178 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYD---HQDEYTAAHSLQFSPDGE-QLFAGY-K 178 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhh---hHHhhhhheeEEecCCCC-eEeecc-c
Confidence 45677777763 1223678899999888 9999999999888887663 433332 23444559999 777766 5
Q ss_pred CeEEEEEC-CCCeeE--EEE-----EecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 108 GIIRVIDV-SNEKLH--KSF-----VGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 108 g~i~vwd~-~~~~~~--~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
..|+++|+ +.|+.. ... .+..+.|.+++|+|.+...++.++. ...+-
T Consensus 179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY-------------------------~q~~g 233 (406)
T KOG2919|consen 179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY-------------------------GQRVG 233 (406)
T ss_pred ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecc-------------------------cceee
Confidence 68999998 444322 111 1346789999999988889999998 88999
Q ss_pred EEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeecc-CCcEEEEEccccceeeccccccCCCCCCCCccccccce
Q 016185 180 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 258 (394)
Q Consensus 180 vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
||.-..+.++..+. +|.+.|+.++|.+ +|+.|++|+. |..|..||++.. ..++
T Consensus 234 iy~~~~~~pl~llg---gh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~----------------------~~pv 287 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLG---GHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYS----------------------RDPV 287 (406)
T ss_pred eEecCCCCceeeec---ccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhc----------------------cchh
Confidence 99888888998888 8999999999999 8888888875 789999999983 3356
Q ss_pred eeeecCCC-ceEEEEEe----CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEE
Q 016185 259 FIASVHSN-YVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 333 (394)
Q Consensus 259 ~~~~~~~~-~i~~~~~~----~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 333 (394)
..+..|.. .=..|.|+ +++|++|+.||.|++||++..-. .+..+..+...++.++++|.. .++|+
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--------~~sv~~~~sd~vNgvslnP~m--pilat 357 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--------EVSVTGNYSDTVNGVSLNPIM--PILAT 357 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--------cccccccccccccceecCccc--ceeee
Confidence 66666665 33455565 88999999999999999997421 456667778889999999997 57888
Q ss_pred EeCC
Q 016185 334 GNRE 337 (394)
Q Consensus 334 ~~~d 337 (394)
++..
T Consensus 358 ssGq 361 (406)
T KOG2919|consen 358 SSGQ 361 (406)
T ss_pred ccCc
Confidence 7754
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=8.2e-19 Score=157.80 Aligned_cols=291 Identities=25% Similarity=0.440 Sum_probs=218.8
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc-eeEEeeecccCCcccceEEEEEEEcCCCCcEEEE-e
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA-G 104 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s-~ 104 (394)
.+..|...+.++.|.+ .+..++.++.++ +.+|+...+. ....+... +...+..+.+. .+++..+++. +
T Consensus 60 ~~~~~~~~i~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~ 130 (466)
T COG2319 60 LLRGHEDSITSIAFSP----DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL----HDSSVSKLALS-SPDGNSILLASS 130 (466)
T ss_pred eeeeccceEEEEEECC----CCcEEEEecCCCcEEEEEcCCCceeEEEEecc----CCCceeeEEEE-CCCcceEEeccC
Confidence 4568999999999998 688888888776 9999988876 55555532 11466677775 5777634444 3
Q ss_pred ecCCeEEEEECCC-CeeEEEEEecCCceeEEEEcCCCCcEEEEce-eeeEEeeccceeeeeeeccceeeeccCCcEEEEE
Q 016185 105 GINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KVIIISSLSLICLLLFIRSNCLRVGQDESVRLWN 182 (394)
Q Consensus 105 ~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd 182 (394)
..|+.+.+|+... ......+..|...|..++|+| ++..+++++ . |+.+++|+
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~-------------------------~~~~~~~~ 184 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSL-------------------------DGTIKLWD 184 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCC-------------------------CCceEEEE
Confidence 4499999999987 788888999999999999999 555666665 5 89999999
Q ss_pred ecCCcEEEEeeccCCCcccEEEEEecCCCCe-eEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee-e
Q 016185 183 VQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-I 260 (394)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 260 (394)
+..+..+..+. +|...|.+++|+| ++. .+++++.|+.+++||.... ..+. .
T Consensus 185 ~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~-----------------------~~~~~~ 237 (466)
T COG2319 185 LRTGKPLSTLA---GHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTG-----------------------KLLRST 237 (466)
T ss_pred cCCCceEEeec---cCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCC-----------------------cEEeee
Confidence 99888888887 7999999999998 776 5666699999999987752 2233 4
Q ss_pred eecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCC
Q 016185 261 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 338 (394)
Q Consensus 261 ~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 338 (394)
+..|.... ...|. +.++++++.|+.+++|++..... .+.....|...+.++.|.|++ ..+++++.|+
T Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~d~ 306 (466)
T COG2319 238 LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG--KLLASGSSDG 306 (466)
T ss_pred cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC--CEEEEeeCCC
Confidence 66666664 22454 66888999999999999987652 122225667889999999966 4677788889
Q ss_pred cEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEe-ccCCeEEEEEcCC
Q 016185 339 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRWDAIP 393 (394)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~ 393 (394)
.+.+|+........... ...|...+..+.|.+++..++.+ ..|+.+++|++..
T Consensus 307 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 307 TVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred cEEEEEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence 99999887764322222 22566679999994333556655 6889999999764
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=2.1e-20 Score=144.93 Aligned_cols=256 Identities=15% Similarity=0.219 Sum_probs=190.7
Q ss_pred cCccceeEEEEEeeCC-CcceEEEEecCCcEEEEEcCCCcee----EEeeecccCCcccceEEEEEEEcCCCCcEEEEee
Q 016185 31 EGKRPLYAVVFNFIDS-RYFNVFATVGGNRVTVYQCLEGGVI----AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~-~~~~~las~~~d~i~vw~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 105 (394)
.|.-+++.+.|.|+.. ...++||+ +.|.+++|.+...+.. ..+.......+..++++..|. .-...++.+.+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn--e~dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN--EVDPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccc--cCCcceeEeec
Confidence 5788999999999421 23455665 4577999998753321 223333444667789888887 43444999999
Q ss_pred cCCeEEEEECCCCe---eEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEE
Q 016185 106 INGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWN 182 (394)
Q Consensus 106 ~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd 182 (394)
-|-+..|||++++. ....+-.|..+|.+++|...+...+++.+. ||+++++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga-------------------------DGSvRmFD 225 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA-------------------------DGSVRMFD 225 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecC-------------------------CCcEEEEE
Confidence 99999999999863 356777899999999999977789999999 99999999
Q ss_pred ecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccC-CcEEEEEccccceeeccccccCCCCCCCCccccccceeee
Q 016185 183 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 261 (394)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (394)
++.-+-...+........+...++|++++.+++++-..| ..|.+.|++.. ..|+..+
T Consensus 226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P----------------------~tpva~L 283 (364)
T KOG0290|consen 226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP----------------------CTPVARL 283 (364)
T ss_pred ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC----------------------Ccceehh
Confidence 987543332221112357889999999889999887765 56999999984 4578899
Q ss_pred ecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCC
Q 016185 262 SVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 338 (394)
Q Consensus 262 ~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 338 (394)
..|...|.+++|. ...+.+++.|..+.+||+...-... ...++..+. ....|+.+.|++... ..++.+.. +
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~---~~dPilay~-a~~EVNqi~Ws~~~~-Dwiai~~~-k 357 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN---GEDPILAYT-AGGEVNQIQWSSSQP-DWIAICFG-K 357 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccC---CCCchhhhh-ccceeeeeeecccCC-CEEEEEec-C
Confidence 9999999999996 6799999999999999998764311 111233333 456899999998765 67777764 3
Q ss_pred cEEE
Q 016185 339 KIFV 342 (394)
Q Consensus 339 ~i~i 342 (394)
.+.+
T Consensus 358 klei 361 (364)
T KOG0290|consen 358 KLEI 361 (364)
T ss_pred eeeE
Confidence 3433
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.5e-21 Score=159.14 Aligned_cols=177 Identities=17% Similarity=0.323 Sum_probs=145.3
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCc
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (394)
+.+.+.+.|.||++-|+|++|+. +|.+|++|++|. +.|||.-.-+.+..+.. +|...|+++.|.+..+++
T Consensus 38 rrL~lE~eL~GH~GCVN~LeWn~----dG~lL~SGSDD~r~ivWd~~~~KllhsI~T----gHtaNIFsvKFvP~tnnr- 108 (758)
T KOG1310|consen 38 RRLDLEAELTGHTGCVNCLEWNA----DGELLASGSDDTRLIVWDPFEYKLLHSIST----GHTANIFSVKFVPYTNNR- 108 (758)
T ss_pred hhcchhhhhccccceecceeecC----CCCEEeecCCcceEEeecchhcceeeeeec----ccccceeEEeeeccCCCe-
Confidence 34566778899999999999998 899999999998 99999988887777764 799999999999766777
Q ss_pred EEEEeecCCeEEEEECCCC----------eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccce
Q 016185 100 FLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNC 169 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~ 169 (394)
++++|..|..|+++|+... +..+.+..|...|..++-.|.+++.+.+++.
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE-------------------- 168 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE-------------------- 168 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC--------------------
Confidence 9999999999999999742 3445566899999999999977799999999
Q ss_pred eeeccCCcEEEEEecCCc-------EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 170 LRVGQDESVRLWNVQTGI-------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 170 ~~~~~d~~i~vwd~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
||+|+-+|++... ....+......--...|+.++|.+..+|++|+.|-..++||.+.
T Consensus 169 -----DGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 169 -----DGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred -----CcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 9999999998632 11111111122345679999998899999999999999999765
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=7.2e-18 Score=151.65 Aligned_cols=290 Identities=24% Similarity=0.421 Sum_probs=220.2
Q ss_pred cceeeeeccCccceeEEEEEeeCCCcceEEEEecC-Cc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcE
Q 016185 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 23 ~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~-d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (394)
......+..|...|.+++|+| ++..+++++. ++ +++|+...+..+..+. .|...+.+++|. |++..+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~--~~~~~~ 213 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSP----DGKLLASGSSLDGTIKLWDLRTGKPLSTLA-----GHTDPVSSLAFS--PDGGLL 213 (466)
T ss_pred CeEEEEEecCcccEEEEEECC----CCCEEEecCCCCCceEEEEcCCCceEEeec-----cCCCceEEEEEc--CCcceE
Confidence 566777889999999999999 6778888875 66 9999998877777777 488899999998 888734
Q ss_pred EEEeecCCeEEEEECCCCeeEE-EEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 101 LVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 101 l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
+++++.|+.|++||...+.... .+.+|.... ...|+| ++.++++++. |+.++
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~-------------------------d~~~~ 266 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSS-------------------------DGTIR 266 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecC-------------------------CCcEE
Confidence 4455999999999988777777 688887775 448999 5578888888 99999
Q ss_pred EEEecCCcE-EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccce
Q 016185 180 LWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 258 (394)
Q Consensus 180 vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
+|+...... ...+. .|...+.++.|.| ++..+++++.|+.+++||...... .
T Consensus 267 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~-----------------------~ 319 (466)
T COG2319 267 LWDLRSSSSLLRTLS---GHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKL-----------------------L 319 (466)
T ss_pred EeeecCCCcEEEEEe---cCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCce-----------------------E
Confidence 999987665 44443 6899999999999 777788899999999998887332 2
Q ss_pred ee--eecCCCceEEEEEe--CcEEEEe-ecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEE
Q 016185 259 FI--ASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 333 (394)
Q Consensus 259 ~~--~~~~~~~i~~~~~~--~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 333 (394)
.. ...|...+..+.+. +..++.+ ..|+.+.+|+..... ......... .+..+.+.+ . ......
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~-~-~~~~~~ 387 (466)
T COG2319 320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---------PLKTLEGHS-NVLSVSFSP-D-GRVVSS 387 (466)
T ss_pred EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---------eeEEecCCc-eEEEEEECC-C-CCEEEE
Confidence 22 23666677777773 1455555 678899999988764 111111111 177888888 5 445555
Q ss_pred EeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 334 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+..++.+.+|+..... ...... .+...+....+++++..+++++.++.+++|++..
T Consensus 388 ~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 388 GSTDGTVRLWDLSTGS--LLRNLD--GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ecCCCceEEEecccCe--eeeecc--CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 8899999999998874 233332 2116889999999999999999999999999753
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=3.3e-20 Score=149.68 Aligned_cols=206 Identities=20% Similarity=0.326 Sum_probs=162.1
Q ss_pred EEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc-------EEEEeec
Q 016185 122 KSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI-------CILIFAG 194 (394)
Q Consensus 122 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~-------~~~~~~~ 194 (394)
..+.+|.++|..++|+|.+.+.+||||. |.+|.||++..+. ++..+.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSe-------------------------D~~v~vW~IPe~~l~~~ltepvv~L~- 128 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSE-------------------------DTKVMVWQIPENGLTRDLTEPVVELY- 128 (472)
T ss_pred CCccCccccccccccCccCCceeecCCC-------------------------CceEEEEECCCcccccCcccceEEEe-
Confidence 3456899999999999999999999999 9999999987553 344555
Q ss_pred cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe
Q 016185 195 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 274 (394)
Q Consensus 195 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 274 (394)
+|...|--++|+|.-.+.|++++.|.+|.+|++.++ ..+..+. |++.|.++.|+
T Consensus 129 --gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg-----------------------eali~l~-hpd~i~S~sfn 182 (472)
T KOG0303|consen 129 --GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG-----------------------EALITLD-HPDMVYSMSFN 182 (472)
T ss_pred --ecceeEEEEeecccchhhHhhccCCceEEEEeccCC-----------------------ceeeecC-CCCeEEEEEec
Confidence 899999999999977889999999999999999994 3455555 99999999998
Q ss_pred --CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCC-CeEEEEEeecCCcceEEEEe---CCCcEEEEEecCC
Q 016185 275 --GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSCDFHYNAAAIGN---REGKIFVWELQSS 348 (394)
Q Consensus 275 --~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~ 348 (394)
|.++++.+.|..|+|||.++++ .+..-..|.+ .-..+.|-.++ .++.+|. .+..+-+||...-
T Consensus 183 ~dGs~l~TtckDKkvRv~dpr~~~---------~v~e~~~heG~k~~Raifl~~g--~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 183 RDGSLLCTTCKDKKVRVIDPRRGT---------VVSEGVAHEGAKPARAIFLASG--KIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred cCCceeeeecccceeEEEcCCCCc---------EeeecccccCCCcceeEEeccC--ceeeeccccccccceeccCcccc
Confidence 9999999999999999999987 4444445543 23456677777 4555553 4788999998764
Q ss_pred C-ceeeEEeccCCccCCeeEEEeccCCCEEEEe-ccCCeEEEEEcCC
Q 016185 349 P-PVLIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRWDAIP 393 (394)
Q Consensus 349 ~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~ 393 (394)
+ +.....+. .++.|.-=-|.+|.+++..+ -.|+.||.|.+.+
T Consensus 252 ~eP~~~~elD---tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 252 EEPIALQELD---TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred cCcceeEEec---cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 3 33344444 23556666678888877654 4899999999875
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.8e-19 Score=134.12 Aligned_cols=283 Identities=15% Similarity=0.173 Sum_probs=191.0
Q ss_pred cceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC-----ceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-----GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
..|.+-+++| .+++|++|..++ |.++.+.+- +............|+++++.++|. .. +|++|+.
T Consensus 11 ~tvf~qa~sp----~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~-~Lls~gd- 80 (325)
T KOG0649|consen 11 NTVFAQAISP----SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DD-FLLSGGD- 80 (325)
T ss_pred HHHHHHhhCC----cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hh-heeeccC-
Confidence 4577788999 789999999988 999987631 111112222224899999999986 23 6777774
Q ss_pred CeEEEEECCCCee------EEEE--Eec-----CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeecc
Q 016185 108 GIIRVIDVSNEKL------HKSF--VGH-----GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQ 174 (394)
Q Consensus 108 g~i~vwd~~~~~~------~~~~--~~~-----~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
|.|+=|.+..... +..+ ..| -..|+++-..|..+.+|..|+
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG-------------------------- 134 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG-------------------------- 134 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC--------------------------
Confidence 9999998764322 1111 122 246889999996666666664
Q ss_pred CCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccc
Q 016185 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 254 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (394)
|+.++-||+++|+..++++ +|++.|.++.-.. ....+++|+.||++|+||.++.+........
T Consensus 135 D~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y------------- 197 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY------------- 197 (325)
T ss_pred CeEEEEEEecCCEEEEEEc---CCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccc-------------
Confidence 9999999999999999999 9999999999865 5567999999999999999995532211100
Q ss_pred ccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEE
Q 016185 255 QFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 334 (394)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 334 (394)
..+-..-.....+|.+++.+.+++++|+ ...+.+|.+++.+.. .+..++. ++..+.|..+ .++++
T Consensus 198 k~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t-------~vfpipa---~v~~v~F~~d----~vl~~ 262 (325)
T KOG0649|consen 198 KNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSEST-------CVFPIPA---RVHLVDFVDD----CVLIG 262 (325)
T ss_pred cChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCce-------EEEeccc---ceeEeeeecc----eEEEe
Confidence 0011111123456888888899998865 567999999988621 2333333 4556667655 57888
Q ss_pred eCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccC-CCEEEEeccCCeEEEE
Q 016185 335 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRW 389 (394)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw 389 (394)
+..+.|.-|.+..- +....+ ......+...|+.. -++|-.++....+.|+
T Consensus 263 G~g~~v~~~~l~Gv---l~a~ip--~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 263 GEGNHVQSYTLNGV---LQANIP--VESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccccceeeeeeccE---EEEecc--CCccceeeecccCCceEEEEecccceeeeee
Confidence 88888999988642 333333 22234555555533 2456666777777765
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=8.2e-20 Score=138.21 Aligned_cols=239 Identities=15% Similarity=0.118 Sum_probs=172.1
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC----------eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEe
Q 016185 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIIS 154 (394)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~ 154 (394)
.|+.-+|+ |.++ +|++|..+|.|.+..+++. ..+...++|.++|+.++|.. .+|++|+
T Consensus 12 tvf~qa~s--p~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g------ 79 (325)
T KOG0649|consen 12 TVFAQAIS--PSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG------ 79 (325)
T ss_pred HHHHHhhC--Ccce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc------
Confidence 45556777 8898 9999999999999987532 23555689999999999984 6888888
Q ss_pred eccceeeeeeeccceeeeccCCcEEEEEecCCcE------EEEeeccCCC-----cccEEEEEecCCCCeeEEeeccCCc
Q 016185 155 SLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC------ILIFAGAGGH-----RNEVLSVDFHPSDIYRIASCGMDNT 223 (394)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~s~~~dg~ 223 (394)
||.|+-|..+.... +...+.+ -| -..|+++-..| ..+-++.++.|+.
T Consensus 80 --------------------dG~V~gw~W~E~~es~~~K~lwe~~~P-~~~~~~evPeINam~ldP-~enSi~~AgGD~~ 137 (325)
T KOG0649|consen 80 --------------------DGLVYGWEWNEEEESLATKRLWEVKIP-MQVDAVEVPEINAMWLDP-SENSILFAGGDGV 137 (325)
T ss_pred --------------------CceEEEeeehhhhhhccchhhhhhcCc-cccCcccCCccceeEecc-CCCcEEEecCCeE
Confidence 89999998764322 1111100 11 24688999999 5555666668999
Q ss_pred EEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCC
Q 016185 224 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 301 (394)
Q Consensus 224 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~ 301 (394)
++-||++++ ...+.+.+|++.|.++.-. ...+++|+.||++++||+++++.....
T Consensus 138 ~y~~dlE~G-----------------------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 138 IYQVDLEDG-----------------------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred EEEEEecCC-----------------------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence 999999994 4567899999999999884 668999999999999999998854332
Q ss_pred CcceecccccCCC-CCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEe
Q 016185 302 GTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 380 (394)
Q Consensus 302 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 380 (394)
...+....++.+. ..|.+++.+ . .++++|+. ..+.+|+++..++..+..++ .++..+.|..| .++++
T Consensus 195 e~yk~~~~lRp~~g~wigala~~--e--dWlvCGgG-p~lslwhLrsse~t~vfpip-----a~v~~v~F~~d--~vl~~ 262 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGALAVN--E--DWLVCGGG-PKLSLWHLRSSESTCVFPIP-----ARVHLVDFVDD--CVLIG 262 (325)
T ss_pred ccccChhhcCcccCceeEEEecc--C--ceEEecCC-CceeEEeccCCCceEEEecc-----cceeEeeeecc--eEEEe
Confidence 2222222223232 235555543 3 46777774 57999999999877777776 56888888644 67777
Q ss_pred ccCCeEEEEEcC
Q 016185 381 CEDGAIWRWDAI 392 (394)
Q Consensus 381 ~~dg~i~iwd~~ 392 (394)
+.-..|.-|.+.
T Consensus 263 G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 263 GEGNHVQSYTLN 274 (325)
T ss_pred ccccceeeeeec
Confidence 766677777653
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=1.8e-19 Score=159.00 Aligned_cols=263 Identities=17% Similarity=0.164 Sum_probs=195.4
Q ss_pred cceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCcee-EEeeecccCCcccceEEEEEEEcCCCCcE
Q 016185 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 23 ~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (394)
..+...+. -..+|+|++|+|. +.+++|.|..+| |.+||+..+... ...-......|..++..+.|..++.+. -
T Consensus 233 ~~Pe~~~~-~~s~v~~~~f~p~---~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~-~ 307 (555)
T KOG1587|consen 233 NTPELVLE-SPSEVTCLKFCPF---DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNT-E 307 (555)
T ss_pred CCceEEEe-cCCceeEEEeccC---CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCC-c
Confidence 45555443 3678999999994 688999999999 999999877652 222223334789999999999777774 7
Q ss_pred EEEeecCCeEEEEECCCCee-E-----EEEE------ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccc
Q 016185 101 LVAGGINGIIRVIDVSNEKL-H-----KSFV------GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSN 168 (394)
Q Consensus 101 l~s~~~dg~i~vwd~~~~~~-~-----~~~~------~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~ 168 (394)
+++++.||.|..|+++.-.. . .... .-...+++++|.+.+.+.++.|+.
T Consensus 308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe------------------- 368 (555)
T KOG1587|consen 308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE------------------- 368 (555)
T ss_pred eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC-------------------
Confidence 99999999999998764321 1 1111 112367899999988899999998
Q ss_pred eeeeccCCcEEEEEecCCcEEE-----EeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEcc-ccceeecccccc
Q 016185 169 CLRVGQDESVRLWNVQTGICIL-----IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK-EFWTYVEKSFTW 242 (394)
Q Consensus 169 ~~~~~~d~~i~vwd~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~ 242 (394)
+|.|..-+....+... .......|.++|+++.++|-....|++++ |.+++||.-. .
T Consensus 369 ------~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~----------- 430 (555)
T KOG1587|consen 369 ------EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI----------- 430 (555)
T ss_pred ------CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-----------
Confidence 9988774332211111 01112268899999999995556666666 9999999988 4
Q ss_pred CCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEE
Q 016185 243 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 319 (394)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 319 (394)
..|+..+..+...+.+++|+ +..++++..||.|.+||+...... ++.+........+.
T Consensus 431 ------------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~-------Pv~s~~~~~~~l~~ 491 (555)
T KOG1587|consen 431 ------------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE-------PVLSQKVCSPALTR 491 (555)
T ss_pred ------------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC-------Ccccccccccccce
Confidence 55788888889999999999 668999999999999999876432 33444444556778
Q ss_pred EEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 320 IKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 320 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
+.|++.+ ..|++|...|++++|++...
T Consensus 492 ~~~s~~g--~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 492 VRWSPNG--KLLAVGDANGTTHILKLSES 518 (555)
T ss_pred eecCCCC--cEEEEecCCCcEEEEEcCch
Confidence 8899988 69999999999999999643
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.7e-20 Score=146.71 Aligned_cols=291 Identities=13% Similarity=0.110 Sum_probs=192.7
Q ss_pred eeeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCC
Q 016185 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (394)
Q Consensus 3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~ 81 (394)
++|++++.+.+.+++... .+....+++|...++.++|...+ .+..+.+|+.|+ |++||++.......+..-. .
T Consensus 42 ~vav~lSngsv~lyd~~t--g~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~--~ 115 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGT--GQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESARISWTQ--Q 115 (376)
T ss_pred eEEEEecCCeEEEEeccc--hhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhhheeccC--C
Confidence 589999999999997666 55667789999999999998643 467889999998 9999999877665554221 1
Q ss_pred cccceEEEEEEEcCCCCcEEEEee----cCCeEEEEECCCCee-EEEE-EecCCceeEEEEcCCCCcEEEEceeeeEEee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGG----INGIIRVIDVSNEKL-HKSF-VGHGDSINEIRTQPLKPSLVVSASKVIIISS 155 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~ 155 (394)
...+..+++.. -.++ ++++|. .+-.|.+||++..+. ++.+ ..|.+.|++++|+|.++++|++||.
T Consensus 116 ~~~~f~~ld~n--ck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv------ 186 (376)
T KOG1188|consen 116 SGTPFICLDLN--CKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV------ 186 (376)
T ss_pred CCCcceEeecc--CcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecc------
Confidence 23455555443 4555 777774 467899999987654 5555 4799999999999999999999999
Q ss_pred ccceeeeeeeccceeeeccCCcEEEEEecCCc----EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 156 LSLICLLLFIRSNCLRVGQDESVRLWNVQTGI----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
||.|.++|+.... ...++. |...|.++.|....-+.+.+-+..+...+|++..
T Consensus 187 -------------------DGLvnlfD~~~d~EeDaL~~viN----~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 187 -------------------DGLVNLFDTKKDNEEDALLHVIN----HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred -------------------cceEEeeecCCCcchhhHHHhhc----ccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 9999999987543 334443 7888999999973334688889999999999998
Q ss_pred cceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe-CcEEEEeec-CCeEEEecCCCCCCCCCCCcceeccc
Q 016185 232 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQK 309 (394)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~ 309 (394)
+.......... ............-..+..| ... .+..+.++. -+...++-+....... ....+..
T Consensus 244 ~~~~~~~~~~~---~~~~d~r~~~~~dY~I~~~-------~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~---~~~~~a~ 310 (376)
T KOG1188|consen 244 GSEETWLENPD---VSADDLRKEDNCDYVINEH-------SPGDKDTCALAGTDSNKGTIFPLVDTSSGS---LLTEPAI 310 (376)
T ss_pred CChhhcccCcc---chhhhHHhhhhhhheeecc-------cCCCcceEEEeccccCceeEEEeeeccccc---ccCcccc
Confidence 55322111000 0000000000011122222 111 344444444 5555555443211100 1112334
Q ss_pred ccC-CCCCeEEEEEeecCCcceEEEEeCCCcEEEEEec
Q 016185 310 YPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 310 ~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (394)
+.+ |..-|..+.|...+ .++.+|++||.+.+|...
T Consensus 311 l~g~~~eiVR~i~~~~~~--~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 311 LQGGHEEIVRDILFDVKN--DVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCcHHHHHHHhhhccc--ceeeccCCCceEEEEecC
Confidence 444 55556777777666 799999999999999853
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.85 E-value=4.8e-20 Score=154.50 Aligned_cols=265 Identities=13% Similarity=0.193 Sum_probs=188.5
Q ss_pred cCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEe---eecccC-CcccceEEEEEEEcCCCCcEEEEeec
Q 016185 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAAL---QSYVDE-DKEESFYTVSWACNVDGIPFLVAGGI 106 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~---~~~~~~-~~~~~v~~~~~~~~~~~~~~l~s~~~ 106 (394)
.|..-|.|+.|+. +...+.+++++.+.+|+-.+.+....+ ..+.+. .| +....-.- ..+...++.++.
T Consensus 12 r~~e~vc~v~w~~----~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h---~~~rs~~~-g~~~d~~~i~s~ 83 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS----NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMH---LGGRSSGG-GKGSDTLLICSN 83 (737)
T ss_pred ccceeEEeecccc----cceEEEeccCceEEEeecccchhhhhhhCCcccCCcccc---ccccccCC-CCCcceEEEEcC
Confidence 4677788999996 567777777666555543333222222 211111 11 00111000 122237888999
Q ss_pred CCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC
Q 016185 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG 186 (394)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~ 186 (394)
||.+.+.+ +.++..+.+..|.+.+.+-.|+| ++.-|++.+. ||.|++|.- +|
T Consensus 84 DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GE-------------------------DG~iKiWSr-sG 135 (737)
T KOG1524|consen 84 DGRFVILN-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGE-------------------------DGVIKIWSR-SG 135 (737)
T ss_pred CceEEEec-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecC-------------------------CceEEEEec-cc
Confidence 99999998 67888888999999999999999 7788888888 999999984 45
Q ss_pred cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCC
Q 016185 187 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 266 (394)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (394)
-...++. ....+|+|++|.|+..+.+++.+ +.+.+=.+.. ...+...+.|.+
T Consensus 136 MLRStl~---Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~-----------------------n~k~i~WkAHDG 187 (737)
T KOG1524|consen 136 MLRSTVV---QNEESIRCARWAPNSNSIVFCQG--GHISIKPLAA-----------------------NSKIIRWRAHDG 187 (737)
T ss_pred hHHHHHh---hcCceeEEEEECCCCCceEEecC--CeEEEeeccc-----------------------ccceeEEeccCc
Confidence 4433333 46789999999994455455443 4455544444 335778899999
Q ss_pred ceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEE
Q 016185 267 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 344 (394)
Q Consensus 267 ~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd 344 (394)
-|.++.|+ .+++++|+.|-..++||.... .+..-..|+.+|++++|.|+. .++.++. +++|
T Consensus 188 iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----------~Lf~S~~~ey~ITSva~npd~---~~~v~S~-nt~R--- 250 (737)
T KOG1524|consen 188 LVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----------NLFTSAAEEYAITSVAFNPEK---DYLLWSY-NTAR--- 250 (737)
T ss_pred EEEEeecCccccceeecCCceeEEeecccCc----------ccccCChhccceeeeeecccc---ceeeeee-eeee---
Confidence 99999998 889999999999999998755 567778889999999999995 5666653 2333
Q ss_pred ecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEE
Q 016185 345 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 388 (394)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 388 (394)
+. ....+.|..++||+||..++.|...|.+.+
T Consensus 251 -----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 251 -----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -----------ec-CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 11 123468999999999999999999998754
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.1e-20 Score=159.21 Aligned_cols=249 Identities=13% Similarity=0.183 Sum_probs=175.1
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC--------CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeE
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVII 152 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~ 152 (394)
.|...|..+.+. +... .|++++.||.+.+|+++. -+++.+|++|.++|.|++..+ ++..+++|+-
T Consensus 292 s~~d~ir~l~~~--~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~--- 364 (577)
T KOG0642|consen 292 SHDDCIRALAFH--PSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGI--- 364 (577)
T ss_pred cchhhhhhhhcC--CCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeecc---
Confidence 567777777775 4444 899999999999999932 257889999999999999999 8899999999
Q ss_pred EeeccceeeeeeeccceeeeccCCcEEEEEecCC----------cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC
Q 016185 153 ISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG----------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 222 (394)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg 222 (394)
||+|+.|++... .....+. ||.+.+..+++++ ....|++++.||
T Consensus 365 ----------------------Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~---Ghtdavw~l~~s~-~~~~Llscs~Dg 418 (577)
T KOG0642|consen 365 ----------------------DGTIRCWNLPPNQDPDDSYDPSVLSGTLL---GHTDAVWLLALSS-TKDRLLSCSSDG 418 (577)
T ss_pred ----------------------CceeeeeccCCCCCcccccCcchhcccee---ccccceeeeeecc-cccceeeecCCc
Confidence 999999966422 1223344 8999999999999 888899999999
Q ss_pred cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCc---EEEEeecCCeEEEecCCCCCCCC
Q 016185 223 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD---FILSKSVDNEIVLWEPKMKEQSP 299 (394)
Q Consensus 223 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~ 299 (394)
++++|+...... ...........-.++.+-.. +.++...-+.-.++++.......
T Consensus 419 Tvr~w~~~~~~~----------------------~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~ 476 (577)
T KOG0642|consen 419 TVRLWEPTEESP----------------------CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLL 476 (577)
T ss_pred eEEeeccCCcCc----------------------cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhhee
Confidence 999999887321 00111111122233444322 23332222333333333322100
Q ss_pred CCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEE
Q 016185 300 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS 379 (394)
Q Consensus 300 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 379 (394)
.... ...........+..+...|.. .+.+++..|+.|+++|..++. .+.... .|...++++++.|+|.+|++
T Consensus 477 ~~~s--~~~~~~~~~~~in~vVs~~~~--~~~~~~hed~~Ir~~dn~~~~--~l~s~~--a~~~svtslai~~ng~~l~s 548 (577)
T KOG0642|consen 477 IFES--SASPGPRRYPQINKVVSHPTA--DITFTAHEDRSIRFFDNKTGK--ILHSMV--AHKDSVTSLAIDPNGPYLMS 548 (577)
T ss_pred eccc--cCCCcccccCccceEEecCCC--CeeEecccCCceecccccccc--cchhee--eccceecceeecCCCceEEe
Confidence 0000 000011122457788888888 689999999999999999985 555555 77889999999999999999
Q ss_pred eccCCeEEEEEcC
Q 016185 380 CCEDGAIWRWDAI 392 (394)
Q Consensus 380 ~~~dg~i~iwd~~ 392 (394)
++.|+.+++|.+.
T Consensus 549 ~s~d~sv~l~kld 561 (577)
T KOG0642|consen 549 GSHDGSVRLWKLD 561 (577)
T ss_pred ecCCceeehhhcc
Confidence 9999999999874
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-18 Score=154.81 Aligned_cols=306 Identities=14% Similarity=0.164 Sum_probs=209.2
Q ss_pred ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCC--Cc--eeEEeeecccCCcccceEEEEEEEcCCCCcEEEEe
Q 016185 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE--GG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (394)
Q Consensus 30 ~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~--~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 104 (394)
..|...++|.++|| +++++|++..|| |.+|.--. +. ....+. -|..+|.+++|+ ++|. +|++|
T Consensus 202 ~~Htf~~t~~~~sp----n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-----WH~~~V~~L~fS--~~G~-~LlSG 269 (792)
T KOG1963|consen 202 VHHTFNITCVALSP----NERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-----WHHDEVNSLSFS--SDGA-YLLSG 269 (792)
T ss_pred hhhcccceeEEecc----ccceEEEeccCCcEEEEeccccccccccceEEE-----ecccccceeEEe--cCCc-eEeec
Confidence 35778899999999 899999999998 99998433 11 222333 578899999998 9999 99999
Q ss_pred ecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec
Q 016185 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ 184 (394)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~ 184 (394)
+..|.+.+|.+.+++ .+-++.-.++|..+.++| ++.+.+.... |..|.+....
T Consensus 270 G~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~-------------------------DNqI~li~~~ 322 (792)
T KOG1963|consen 270 GREGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLE-------------------------DNQIHLIKAS 322 (792)
T ss_pred ccceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEec-------------------------CceEEEEecc
Confidence 999999999999988 555666788999999999 6666666666 9999998876
Q ss_pred CCcEEEEeeccCC--------CcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccc
Q 016185 185 TGICILIFAGAGG--------HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256 (394)
Q Consensus 185 ~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (394)
+......+..+.. ..+-.+.++++| ..+.++-.+..|.|.+||+.+.....+..........
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~--------- 392 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD--------- 392 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccC---------
Confidence 6554444442111 244567889999 7778888999999999999984432221110000000
Q ss_pred ceeeeecCCCceEEEEEe--CcEEEEeec--------C--CeEEEecCCCCCCCCCCCcceecc-cccCCCCCeEEEEEe
Q 016185 257 PVFIASVHSNYVDCNRWL--GDFILSKSV--------D--NEIVLWEPKMKEQSPGEGTADILQ-KYPVPECDIWFIKFS 323 (394)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~--------d--g~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~ 323 (394)
.-..+...+++++.+ |++++|.-. | -.+++|-.....+ ...+.. ....|...+...++.
T Consensus 393 ---~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k-----t~~L~T~I~~PH~~~~vat~~~ 464 (792)
T KOG1963|consen 393 ---GDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK-----TFILNTKINNPHGNAFVATIFL 464 (792)
T ss_pred ---CcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc-----eeEEEEEEecCCCceeEEEEEe
Confidence 000122234455444 777777642 3 3578888765542 111222 234566666666776
Q ss_pred ecCCcceEEEEeCCCcEEEEEecCCC------ceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 324 CDFHYNAAAIGNREGKIFVWELQSSP------PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 324 ~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+..+...+++++.||.+++|-+...+ ..-....-+.-|..++++++|+.||..|+. +.|+.|.+||..+
T Consensus 465 ~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 465 NPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDT 539 (792)
T ss_pred cCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEEecCCC
Confidence 66553489999999999999994332 111222222246789999999999976665 5788999999865
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=3.8e-17 Score=131.24 Aligned_cols=282 Identities=13% Similarity=0.164 Sum_probs=202.0
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC--CeE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN--GII 110 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d--g~i 110 (394)
...++.+.|+. +...|..|+.++.++|+....+.... ...+.+..+..-|+. . ++|..+.+ ..+
T Consensus 5 ~~ti~~~~~Nq----d~~~lsvGs~~Gyk~~~~~~~~k~~~-------~~~~~~~IvEmLFSS--S-LvaiV~~~qpr~L 70 (391)
T KOG2110|consen 5 KPTINFIGFNQ----DSTLLSVGSKDGYKIFSCSPFEKCFS-------KDTEGVSIVEMLFSS--S-LVAIVSIKQPRKL 70 (391)
T ss_pred Ccceeeeeecc----ceeEEEccCCCceeEEecCchHHhhc-------ccCCCeEEEEeeccc--c-eeEEEecCCCceE
Confidence 34567777886 78899999999999999876654111 233445555555443 3 55555443 458
Q ss_pred EEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEE
Q 016185 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICIL 190 (394)
Q Consensus 111 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~ 190 (394)
++.+.+.+..+..+. ...+|.++.++. +.|+.+= ...|+|||+++.+.+.
T Consensus 71 kv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~L--------------------------ee~IyIydI~~MklLh 120 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCL--------------------------EESIYIYDIKDMKLLH 120 (391)
T ss_pred EEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEE--------------------------cccEEEEecccceeeh
Confidence 999998888887776 456799999976 4555554 3459999999999999
Q ss_pred EeeccCCCcccEEEEEecCCCCeeEEeec--cCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCce
Q 016185 191 IFAGAGGHRNEVLSVDFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 268 (394)
Q Consensus 191 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 268 (394)
++.....+...+.++.+++ .+.+++.-+ ..|.|.+||..+ -.++..+..|.+.+
T Consensus 121 TI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n-----------------------l~~v~~I~aH~~~l 176 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN-----------------------LQPVNTINAHKGPL 176 (391)
T ss_pred hhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc-----------------------ceeeeEEEecCCce
Confidence 9886545667777777777 666666432 368999999999 55788999999999
Q ss_pred EEEEEe--CcEEEEeecCCe-EEEecCCCCCCCCCCCcceecccccCC--CCCeEEEEEeecCCcceEEEEeCCCcEEEE
Q 016185 269 DCNRWL--GDFILSKSVDNE-IVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVW 343 (394)
Q Consensus 269 ~~~~~~--~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~~~~~dg~i~iw 343 (394)
.+++|+ |.+|++++..|+ ||||.+.+++ .+.+|+-. ...|.+++|+|+. .+|++.+..++|++|
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~---------kl~eFRRG~~~~~IySL~Fs~ds--~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQ---------KLYEFRRGTYPVSIYSLSFSPDS--QFLAASSNTETVHIF 245 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCcc---------EeeeeeCCceeeEEEEEEECCCC--CeEEEecCCCeEEEE
Confidence 999998 899999999987 8999999887 34444432 3568999999999 589999999999999
Q ss_pred EecCCCce-----------------------------------eeEEeccCCc-cCCeeEEEeccCCCEEEEeccCCeEE
Q 016185 344 ELQSSPPV-----------------------------------LIARLSHAQS-KSPIRQTAMSYDGSTILSCCEDGAIW 387 (394)
Q Consensus 344 d~~~~~~~-----------------------------------~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~ 387 (394)
.+...... .......... ...+..+.-.+....+..++.||.++
T Consensus 246 KL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y 325 (391)
T KOG2110|consen 246 KLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLY 325 (391)
T ss_pred EecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEE
Confidence 98642100 0000010000 01222222224678899999999999
Q ss_pred EEEcCC
Q 016185 388 RWDAIP 393 (394)
Q Consensus 388 iwd~~~ 393 (394)
.|.+..
T Consensus 326 ~y~l~~ 331 (391)
T KOG2110|consen 326 SYRLPP 331 (391)
T ss_pred EEEcCC
Confidence 998864
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=5.6e-20 Score=154.93 Aligned_cols=263 Identities=18% Similarity=0.220 Sum_probs=183.6
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCC-----C---ceeEEeeecccCCcccceEEEEE
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-----G---GVIAALQSYVDEDKEESFYTVSW 91 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~-----~---~~~~~~~~~~~~~~~~~v~~~~~ 91 (394)
+.+.+..++..|.+.|+.++|.| ....|++++.++ +.+|++.+ . +++-++. .|.++|.|+++
T Consensus 282 k~w~ik~tl~s~~d~ir~l~~~~----sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-----aH~gPVl~v~v 352 (577)
T KOG0642|consen 282 KKWNIKFTLRSHDDCIRALAFHP----SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-----AHEGPVLCVVV 352 (577)
T ss_pred eecceeeeeecchhhhhhhhcCC----CCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-----cccCceEEEEe
Confidence 34667778889999999999999 577899999999 99999932 1 2333344 89999999988
Q ss_pred EEcCCCCcEEEEeecCCeEEEEECCCC----------eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 92 ACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 92 ~~~~~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
. +++. .+++|+-||+|+.|++... .....+.||.+.|+.+++++ ....|++++.
T Consensus 353 ~--~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~------------ 416 (577)
T KOG0642|consen 353 P--SNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSS------------ 416 (577)
T ss_pred c--CCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecC------------
Confidence 7 8888 9999999999999966421 23567789999999999999 7788999999
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccc
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 241 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 241 (394)
||+++.|+...... ..+.....| +...++.+-..+....++...-+.-.++++..........
T Consensus 417 -------------DgTvr~w~~~~~~~-~~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~-- 479 (577)
T KOG0642|consen 417 -------------DGTVRLWEPTEESP-CTFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE-- 479 (577)
T ss_pred -------------CceEEeeccCCcCc-cccCCcccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeecc--
Confidence 99999999866555 444422122 3334555543121223332223333333333321111000
Q ss_pred cCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEE
Q 016185 242 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 321 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 321 (394)
.. ..+.......+.....|+. ..+.+++..|+.|+++|..+++ ++.....|...+++++
T Consensus 480 s~----~~~~~~~~~~in~vVs~~~--------~~~~~~~hed~~Ir~~dn~~~~---------~l~s~~a~~~svtsla 538 (577)
T KOG0642|consen 480 SS----ASPGPRRYPQINKVVSHPT--------ADITFTAHEDRSIRFFDNKTGK---------ILHSMVAHKDSVTSLA 538 (577)
T ss_pred cc----CCCcccccCccceEEecCC--------CCeeEecccCCceecccccccc---------cchheeeccceeccee
Confidence 00 0000000111222233333 7789999999999999999887 6778888888999999
Q ss_pred EeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 322 FSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 322 ~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
+.|++ .+|++++.|+.+++|.+...
T Consensus 539 i~~ng--~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 539 IDPNG--PYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ecCCC--ceEEeecCCceeehhhccch
Confidence 99999 79999999999999999776
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=6.1e-18 Score=133.19 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=166.2
Q ss_pred CccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeE
Q 016185 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (394)
Q Consensus 32 h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 110 (394)
-..+|+|.+|++ ++..+|.+-.+. |.||.....+........ ..|...|+.++|+ |..+ .|++++.|..-
T Consensus 9 ~~~pitchAwn~----drt~iAv~~~~~evhiy~~~~~~~w~~~htl--s~Hd~~vtgvdWa--p~sn-rIvtcs~drna 79 (361)
T KOG1523|consen 9 LLEPITCHAWNS----DRTQIAVSPNNHEVHIYSMLGADLWEPAHTL--SEHDKIVTGVDWA--PKSN-RIVTCSHDRNA 79 (361)
T ss_pred ccCceeeeeecC----CCceEEeccCCceEEEEEecCCCCceeceeh--hhhCcceeEEeec--CCCC-ceeEccCCCCc
Confidence 357999999998 788899998887 999997766533332222 2789999999999 8887 89999999999
Q ss_pred EEEECC-CC--eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 111 RVIDVS-NE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 111 ~vwd~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
+||... .+ ++...+..+....+++.|+| .++.|++|+. ...|.||-.+..+
T Consensus 80 yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSg-------------------------ar~isVcy~E~EN 133 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSG-------------------------ARLISVCYYEQEN 133 (361)
T ss_pred cccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccC-------------------------ccEEEEEEEeccc
Confidence 999983 33 44555667889999999999 8899999998 8999999887554
Q ss_pred EE---EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCC-ccccccceeeeec
Q 016185 188 CI---LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP-TKYVQFPVFIASV 263 (394)
Q Consensus 188 ~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 263 (394)
-- +.++ +.+...|+++.|+| ++-+|++|+.|+.++++..--.. +..++.+.... .......+.....
T Consensus 134 dWWVsKhik--kPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~------Vdekpap~pWgsk~PFG~lm~E~~~ 204 (361)
T KOG1523|consen 134 DWWVSKHIK--KPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKG------VDEKPAPTPWGSKMPFGQLMSEASS 204 (361)
T ss_pred ceehhhhhC--CccccceeeeeccC-CcceecccccCcceeEEEEeeec------cccCCCCCCCccCCcHHHHHHhhcc
Confidence 22 1122 15778899999999 99999999999999999865411 11111111111 1111223334446
Q ss_pred CCCceEEEEEe--CcEEEEeecCCeEEEecCCCCC
Q 016185 264 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 296 (394)
Q Consensus 264 ~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~ 296 (394)
..+.+..+.|+ |..|+-.+.|..+.+-|.....
T Consensus 205 ~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 205 SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 67889999998 8999999999999999988764
No 191
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=2.3e-18 Score=139.65 Aligned_cols=279 Identities=15% Similarity=0.154 Sum_probs=187.2
Q ss_pred eeeecCCCceeeeecccc-------cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcC--------
Q 016185 3 RTAIGCEPLVGSLTPSKK-------REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL-------- 66 (394)
Q Consensus 3 ~~a~g~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~-------- 66 (394)
+.|+|..+..+++..-.. ...+....|..|..+|++|.|+| +|++||+|++++ |.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p----~gelLASg~D~g~v~lWk~~~~~~~~~d 103 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP----DGELLASGGDGGEVFLWKQGDVRIFDAD 103 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC----CcCeeeecCCCceEEEEEecCcCCcccc
Confidence 345666666655542211 24556677889999999999999 899999999999 9999866
Q ss_pred C-----CceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCC
Q 016185 67 E-----GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP 141 (394)
Q Consensus 67 ~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 141 (394)
+ .+...... ....|...|+.++|+ |++. ++++++.|+.+++||+..|.....+..|...+..++|.| -+
T Consensus 104 ~e~~~~ke~w~v~k--~lr~h~~diydL~Ws--~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~ 177 (434)
T KOG1009|consen 104 TEADLNKEKWVVKK--VLRGHRDDIYDLAWS--PDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LN 177 (434)
T ss_pred chhhhCccceEEEE--Eecccccchhhhhcc--CCCc-eeeeeeccceEEEEEeccceeEeeccccccccceeecch-hh
Confidence 2 11111111 112688999999999 9999 999999999999999999999999999999999999999 77
Q ss_pred cEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEee-----c---------------cCCCccc
Q 016185 142 SLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFA-----G---------------AGGHRNE 201 (394)
Q Consensus 142 ~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~-----~---------------~~~~~~~ 201 (394)
+++++-+. |...+.+.+...+.++... . .+.-..-
T Consensus 178 qyv~s~s~-------------------------dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 178 QYVASKSS-------------------------DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred hhhhhhcc-------------------------CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 88888776 5544444443222211111 0 0011223
Q ss_pred EEEEEecCCCCeeEEeecc----CCcE-----EEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEE
Q 016185 202 VLSVDFHPSDIYRIASCGM----DNTV-----KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 272 (394)
Q Consensus 202 i~~~~~~~~~~~~l~s~~~----dg~v-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 272 (394)
...++|.| +|.++++... .+.+ ++|+-. ....|+..+.....+...+.
T Consensus 233 FrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk----------------------~l~rP~~~lp~~~k~~lavr 289 (434)
T KOG1009|consen 233 FRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRK----------------------DLKRPAARLPSPKKPALAVR 289 (434)
T ss_pred hhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccc----------------------cccCceeecCCCCcceEEEE
Confidence 45678889 8888887642 2222 222211 12233444444333333333
Q ss_pred Ee-------------------CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEE
Q 016185 273 WL-------------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 333 (394)
Q Consensus 273 ~~-------------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 333 (394)
++ -+.++.......+.+||.++.++ ....-..|-..|+.++|++++ ..++.
T Consensus 290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P--------~~~v~nihy~~iTDiaws~dg--~~l~v 359 (434)
T KOG1009|consen 290 FSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP--------LAVVDNIHYSAITDIAWSDDG--SVLLV 359 (434)
T ss_pred eeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc--------eEEEeeeeeeeecceeecCCC--cEEEE
Confidence 32 12344445567899999987653 223334567789999999999 68999
Q ss_pred EeCCCcEEEEEecCCC
Q 016185 334 GNREGKIFVWELQSSP 349 (394)
Q Consensus 334 ~~~dg~i~iwd~~~~~ 349 (394)
.+.||...+.-+...+
T Consensus 360 SS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 360 SSTDGFCSLVTFEPWE 375 (434)
T ss_pred eccCCceEEEEEcchh
Confidence 9999998888777654
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=4.9e-19 Score=152.39 Aligned_cols=232 Identities=19% Similarity=0.299 Sum_probs=178.4
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeee
Q 016185 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLF 164 (394)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~ 164 (394)
.|+.++|. |||.+++++++ ..+.+||..+|..++++++|.+.|++++|+. ++..+++|+.
T Consensus 14 ci~d~afk--PDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~a--------------- 73 (1081)
T KOG1538|consen 14 CINDIAFK--PDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSA--------------- 73 (1081)
T ss_pred chheeEEC--CCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCC---------------
Confidence 78888888 99995555443 5799999999999999999999999999999 8899999999
Q ss_pred eccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCC
Q 016185 165 IRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 244 (394)
Q Consensus 165 ~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 244 (394)
|..|.+|+..- +-+..+ .|.+.|.|+.|+| -...|++++.. ..-+|......
T Consensus 74 ----------DK~VI~W~~kl-EG~LkY----SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~----------- 125 (1081)
T KOG1538|consen 74 ----------DKSVIIWTSKL-EGILKY----SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKS----------- 125 (1081)
T ss_pred ----------ceeEEEecccc-cceeee----ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhh-----------
Confidence 99999998643 223334 4999999999999 88889998864 46778776621
Q ss_pred CCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEE
Q 016185 245 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 322 (394)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (394)
+.. ......+.+.+|. |++++.|-.+|+|.+-+....+. -.+.+.-+...+|++++|
T Consensus 126 -------------V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek-------~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 126 -------------VSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK-------VKIERPGGSNSPIWSICW 184 (1081)
T ss_pred -------------HHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc-------eEEeCCCCCCCCceEEEe
Confidence 111 1123456777886 99999999999999986543321 145566678889999999
Q ss_pred eecCC---cceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 323 SCDFH---YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 323 ~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
+|+.. ...+++.....++.+|.+........+.+. -...++.+.++|.++..|+.|+.+++|-
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~-----FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALN-----FDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEecceeecccccCC-----CCchhheeccCCcEEEEccCCCceEEEe
Confidence 99743 357888888899999988764211122222 3456789999999999999999999875
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=4e-17 Score=140.82 Aligned_cols=276 Identities=13% Similarity=0.127 Sum_probs=165.3
Q ss_pred EEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEe-ecCCeEEEEECCC-Cee--EEEEEe
Q 016185 52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG-GINGIIRVIDVSN-EKL--HKSFVG 126 (394)
Q Consensus 52 las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~-~~~--~~~~~~ 126 (394)
+++...++ |.+|++.+...+..++... ..+....++++ |+++ +|+++ ..++.|.+|++.. ++. .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~s--pd~~-~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~- 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVIS--PDKR-HLYVGVRPEFRVLSYRIADDGALTFAAESP- 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe---cCCCCccEEEC--CCCC-EEEEEECCCCcEEEEEECCCCceEEeeeec-
Confidence 33334445 9999997543333333221 22344456666 9999 66555 5688999999863 332 22222
Q ss_pred cCCceeEEEEcCCCCcEEEEce-eeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC-Cc---EEEEeeccCCCccc
Q 016185 127 HGDSINEIRTQPLKPSLVVSAS-KVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT-GI---CILIFAGAGGHRNE 201 (394)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~-~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~-~~---~~~~~~~~~~~~~~ 201 (394)
.......++|+| +++++++++ . ++.|.+|++++ +. .+..+. +...
T Consensus 78 ~~~~p~~i~~~~-~g~~l~v~~~~-------------------------~~~v~v~~~~~~g~~~~~~~~~~----~~~~ 127 (330)
T PRK11028 78 LPGSPTHISTDH-QGRFLFSASYN-------------------------ANCVSVSPLDKDGIPVAPIQIIE----GLEG 127 (330)
T ss_pred CCCCceEEEECC-CCCEEEEEEcC-------------------------CCeEEEEEECCCCCCCCceeecc----CCCc
Confidence 233567899999 555555544 4 88999999964 32 222222 3345
Q ss_pred EEEEEecCCCCeeE-EeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEE
Q 016185 202 VLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 278 (394)
Q Consensus 202 i~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 278 (394)
..+++++| +++++ ++...++.|.+||+.+........ .... ... .......+.|+ ++++
T Consensus 128 ~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~---------------~~~~-~~~-~g~~p~~~~~~pdg~~l 189 (330)
T PRK11028 128 CHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQE---------------PAEV-TTV-EGAGPRHMVFHPNQQYA 189 (330)
T ss_pred ccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccC---------------CCce-ecC-CCCCCceEEECCCCCEE
Confidence 67789999 77666 455567999999997622110000 0000 000 11224456665 6788
Q ss_pred EEeec-CCeEEEecCCCCCCCCCCCcceeccccc---C---CCCCeEEEEEeecCCcceEEEEe-CCCcEEEEEecCCCc
Q 016185 279 LSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYP---V---PECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPP 350 (394)
Q Consensus 279 ~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~---~---~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 350 (394)
+++.. ++.|.+|+++.... ..+.+..+. . .......+.++|++ ++++++. .++.|.+|++.....
T Consensus 190 yv~~~~~~~v~v~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg--~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHG-----EIECVQTLDMMPADFSDTRWAADIHITPDG--RHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred EEEecCCCEEEEEEEeCCCC-----CEEEEEEEecCCCcCCCCccceeEEECCCC--CEEEEecCCCCeEEEEEEeCCCC
Confidence 77765 99999999974211 001111111 1 11223468899999 5677664 478999999976432
Q ss_pred --eeeEEeccCCccCCeeEEEeccCCCEEEEecc-CCeEEEEEcC
Q 016185 351 --VLIARLSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAI 392 (394)
Q Consensus 351 --~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 392 (394)
..+..... ......++++|+|++|++++. ++.|.+|++.
T Consensus 263 ~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 263 VLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 12222221 134567999999999998775 8999999875
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=3.6e-20 Score=152.50 Aligned_cols=267 Identities=14% Similarity=0.157 Sum_probs=206.9
Q ss_pred ceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 016185 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI 113 (394)
Q Consensus 35 ~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vw 113 (394)
.-+.+.|+. +|..++.|+..+ +-.+|..++.....+. -.+.|..+.|- .+.+ ++|++ ....+.||
T Consensus 131 GPY~~~ytr----nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~L--Hneq-~~AVA-QK~y~yvY 196 (545)
T KOG1272|consen 131 GPYHLDYTR----NGRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFL--HNEQ-FFAVA-QKKYVYVY 196 (545)
T ss_pred CCeeeeecC----CccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhh--cchH-HHHhh-hhceEEEe
Confidence 346677775 799999999888 9999999998877776 45677888887 5555 55554 45689999
Q ss_pred ECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEee
Q 016185 114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFA 193 (394)
Q Consensus 114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~ 193 (394)
| ..|..+..++.| ..|..+.|.| ..-+|++++. .|.++--|+.+|+.+..+.
T Consensus 197 D-~~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~-------------------------~G~L~Y~DVS~GklVa~~~ 248 (545)
T KOG1272|consen 197 D-NNGTELHCLKRH-IRVARLEFLP-YHFLLVAASE-------------------------AGFLKYQDVSTGKLVASIR 248 (545)
T ss_pred c-CCCcEEeehhhc-Cchhhhcccc-hhheeeeccc-------------------------CCceEEEeechhhhhHHHH
Confidence 9 678888888866 4689999999 7789999998 9999999999999999888
Q ss_pred ccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEE
Q 016185 194 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 273 (394)
Q Consensus 194 ~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 273 (394)
...+.+..++-+| -+..+-+|...|+|.+|.... ..|+..+..|.++|.+|++
T Consensus 249 ---t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s-----------------------kePLvKiLcH~g~V~siAv 301 (545)
T KOG1272|consen 249 ---TGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS-----------------------KEPLVKILCHRGPVSSIAV 301 (545)
T ss_pred ---ccCCccchhhcCC-ccceEEEcCCCceEEecCCCC-----------------------cchHHHHHhcCCCcceEEE
Confidence 5778888999999 778899999999999999998 6788899999999999999
Q ss_pred e--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEE-ecCCCc
Q 016185 274 L--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE-LQSSPP 350 (394)
Q Consensus 274 ~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~ 350 (394)
+ |.|++|++.|..++|||+++..+ +.++.. ..+...+++|..+ +||.+- ...|.||. ...+.+
T Consensus 302 ~~~G~YMaTtG~Dr~~kIWDlR~~~q---------l~t~~t-p~~a~~ls~Sqkg---lLA~~~-G~~v~iw~d~~~~s~ 367 (545)
T KOG1272|consen 302 DRGGRYMATTGLDRKVKIWDLRNFYQ---------LHTYRT-PHPASNLSLSQKG---LLALSY-GDHVQIWKDALKGSG 367 (545)
T ss_pred CCCCcEEeecccccceeEeeeccccc---------cceeec-CCCcccccccccc---ceeeec-CCeeeeehhhhcCCC
Confidence 8 99999999999999999998752 233322 2356678888887 455544 45699994 333221
Q ss_pred eeeEEeccCCccCCeeEEEeccCCCEEEEeccCC
Q 016185 351 VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 384 (394)
Q Consensus 351 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 384 (394)
.....+-.....++|..+.|.|-...|-.|..-|
T Consensus 368 ~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 368 HGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 1111222112336899999999776766665444
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=3.4e-18 Score=156.56 Aligned_cols=307 Identities=13% Similarity=0.136 Sum_probs=198.3
Q ss_pred cceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc----eeEEeeecccCCcccceEEEEEEEcCCC
Q 016185 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----VIAALQSYVDEDKEESFYTVSWACNVDG 97 (394)
Q Consensus 23 ~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (394)
-.+...|..|...|..++.++ +++.+|++|+.|+ |++|+..+-. ..+....+. .....+.++..+ +.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~---~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys--~~~sr~~~vt~~--~~~ 1110 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSS---EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS--PEGSRVEKVTMC--GNG 1110 (1431)
T ss_pred ceEeehhhhccccccceeecC---CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe--ccCCceEEEEec--cCC
Confidence 345667788999999999997 2568999999999 9999987522 112222221 245678888887 778
Q ss_pred CcEEEEeecCCeEEEEECCCC--e-----eEEEEEec-CCc-eeEEEEcCCCCc-EEEEceeeeEEeeccceeeeeeecc
Q 016185 98 IPFLVAGGINGIIRVIDVSNE--K-----LHKSFVGH-GDS-INEIRTQPLKPS-LVVSASKVIIISSLSLICLLLFIRS 167 (394)
Q Consensus 98 ~~~l~s~~~dg~i~vwd~~~~--~-----~~~~~~~~-~~~-v~~~~~~~~~~~-~l~s~~~~i~~~~~~~~~~~~~~~~ 167 (394)
. .+|.++.||.|++.+++.. + ..+....+ .+. |..-+|...... .++.+..
T Consensus 1111 ~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~------------------ 1171 (1431)
T KOG1240|consen 1111 D-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD------------------ 1171 (1431)
T ss_pred C-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe------------------
Confidence 8 8999999999999998752 1 11111112 222 333344443444 6777777
Q ss_pred ceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCC
Q 016185 168 NCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 247 (394)
Q Consensus 168 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 247 (394)
-+.|..||++.......++.. ...+.|++++.+| .+++++.|+..|.+.+||+|-
T Consensus 1172 -------~~~iv~~D~r~~~~~w~lk~~-~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF---------------- 1226 (1431)
T KOG1240|consen 1172 -------LSRIVSWDTRMRHDAWRLKNQ-LRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRF---------------- 1226 (1431)
T ss_pred -------ccceEEecchhhhhHHhhhcC-ccccceeEEEecC-CceEEEEecCCceEEEEEeec----------------
Confidence 899999999987766665532 3457899999999 999999999999999999998
Q ss_pred CCCccccccceeeee-cCCCceEEEEEe---C--cEEEEee--cCCeEEEecCCCCCCCCCCCcc---eecc-cc-----
Q 016185 248 KFPTKYVQFPVFIAS-VHSNYVDCNRWL---G--DFILSKS--VDNEIVLWEPKMKEQSPGEGTA---DILQ-KY----- 310 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~--~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~---~~~~-~~----- 310 (394)
..++..+. .+..+|.-+..+ + ...++++ ..+.|.+|++.++......... ..+. ..
T Consensus 1227 -------~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~ 1299 (1431)
T KOG1240|consen 1227 -------RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDA 1299 (1431)
T ss_pred -------CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccC
Confidence 33344332 233455555554 3 4445444 4778999999988542110000 0010 01
Q ss_pred --cCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCce-------------------------------------
Q 016185 311 --PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV------------------------------------- 351 (394)
Q Consensus 311 --~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------------------- 351 (394)
+.....+.+.-..++ ..+.+|+.|..|+.||....+..
T Consensus 1300 ~kp~~~~~~~~~~~~~~---~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~ 1376 (1431)
T KOG1240|consen 1300 RKPDSLAGISCGVCEKN---GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQ 1376 (1431)
T ss_pred CCCCcccceeeecccCC---ceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhh
Confidence 111112222222222 48999999999999997432100
Q ss_pred ---------eeEEe------ccCCccCCeeEEEeccC-CCEEEEeccCCeEEEEE
Q 016185 352 ---------LIARL------SHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWD 390 (394)
Q Consensus 352 ---------~~~~~------~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd 390 (394)
....+ ....|..+|+++++... ..+|++++.||.|+||.
T Consensus 1377 tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1377 TVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00000 01247788999887754 46899999999999994
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=3.6e-17 Score=131.32 Aligned_cols=238 Identities=14% Similarity=0.161 Sum_probs=172.0
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeee
Q 016185 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLF 164 (394)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~ 164 (394)
.+....|. .+.. .|..|+.|| .++|+................|.-+-|+. .++|..+.
T Consensus 7 ti~~~~~N--qd~~-~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~--------------- 64 (391)
T KOG2110|consen 7 TINFIGFN--QDST-LLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSI--------------- 64 (391)
T ss_pred ceeeeeec--ccee-EEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEec---------------
Confidence 34445554 7787 888888887 57887765443222222333455666765 45554443
Q ss_pred eccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCC
Q 016185 165 IRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 244 (394)
Q Consensus 165 ~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 244 (394)
..-..+++++.+.+..+..+. ...+|.++.++. +.|+++=. ..|+|||+++.+..
T Consensus 65 --------~qpr~Lkv~~~Kk~~~ICe~~----fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklL--------- 119 (391)
T KOG2110|consen 65 --------KQPRKLKVVHFKKKTTICEIF----FPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLL--------- 119 (391)
T ss_pred --------CCCceEEEEEcccCceEEEEe----cCCceEEEEEcc---ceEEEEEc-ccEEEEecccceee---------
Confidence 003469999999998888886 788999999974 34555544 44999999994321
Q ss_pred CCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEee--cCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE
Q 016185 245 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 320 (394)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (394)
..+.....++..+.+++++ +.+++--+ ..|.|.+||+.+.+ .+..+..|++++-++
T Consensus 120 -----------hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~---------~v~~I~aH~~~lAal 179 (391)
T KOG2110|consen 120 -----------HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ---------PVNTINAHKGPLAAL 179 (391)
T ss_pred -----------hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce---------eeeEEEecCCceeEE
Confidence 1122333455567777776 44666433 47899999999776 677888999999999
Q ss_pred EEeecCCcceEEEEeCCCc-EEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 321 KFSCDFHYNAAAIGNREGK-IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+|+++| .+||++++.|+ ||||.+.+++ .+.++....-...|.+++|+|++++|++.|..++|+||.++.
T Consensus 180 afs~~G--~llATASeKGTVIRVf~v~~G~--kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 180 AFSPDG--TLLATASEKGTVIRVFSVPEGQ--KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EECCCC--CEEEEeccCceEEEEEEcCCcc--EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999 79999999997 5899999885 566666434457899999999999999999999999999874
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1e-16 Score=142.40 Aligned_cols=314 Identities=17% Similarity=0.190 Sum_probs=223.4
Q ss_pred EEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC
Q 016185 38 AVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN 117 (394)
Q Consensus 38 ~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 117 (394)
.-.||+ |++++..+..+.|.||...+++++..+. .|..++..+.+.+.+....++++++.+|.|++||...
T Consensus 21 ~avfSn----D~k~l~~~~~~~V~VyS~~Tg~~i~~l~-----~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~ 91 (792)
T KOG1963|consen 21 PAVFSN----DAKFLFLCTGNFVKVYSTATGECITSLE-----DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD 91 (792)
T ss_pred cccccc----CCcEEEEeeCCEEEEEecchHhhhhhcc-----cccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence 345787 7889999988999999999999998777 7888888888886666534888999999999999999
Q ss_pred CeeEEEEEecCCceeEEEEcCC-------------CCcEEEEceeeeE--Eeec-----------------cceeeeeee
Q 016185 118 EKLHKSFVGHGDSINEIRTQPL-------------KPSLVVSASKVII--ISSL-----------------SLICLLLFI 165 (394)
Q Consensus 118 ~~~~~~~~~~~~~v~~~~~~~~-------------~~~~l~s~~~~i~--~~~~-----------------~~~~~~~~~ 165 (394)
+..++++..+ .++..+.+.|. +...+.+.+..+. ..+. -..+....+
T Consensus 92 ~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 92 GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 9998888744 23344333221 1111221111000 0000 123444455
Q ss_pred ccceeeeccCCcEEEEEecCCcEEEE-eeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCC
Q 016185 166 RSNCLRVGQDESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 244 (394)
Q Consensus 166 ~~~~~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 244 (394)
.+++....-+..+.+|+...+..... ......|...+++.+++| ++++++++..||+|.+|.--...
T Consensus 171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~----------- 238 (792)
T KOG1963|consen 171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSS----------- 238 (792)
T ss_pred CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccc-----------
Confidence 56677777788899999887551111 111124777799999999 99999999999999999644310
Q ss_pred CCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEE
Q 016185 245 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 322 (394)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (394)
........+..|...|.+++|+ |.+|++|+..+.+.+|.+.++++ +-++--.++|..+.+
T Consensus 239 --------~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------qfLPRLgs~I~~i~v 300 (792)
T KOG1963|consen 239 --------DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK----------QFLPRLGSPILHIVV 300 (792)
T ss_pred --------cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc----------ccccccCCeeEEEEE
Confidence 0123456788999999999998 89999999999999999998852 223334568999999
Q ss_pred eecCCcceEEEEeCCCcEEEEEecCCCce-eeEEec------cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 323 SCDFHYNAAAIGNREGKIFVWELQSSPPV-LIARLS------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 323 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+|++ .+.+....|+.|.+....+.+.+ .+..+. .....+-.+.++++|.-+.++-.+..|.|.+||+-+
T Consensus 301 S~ds--~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 301 SPDS--DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred cCCC--CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 9999 57888888999999988554211 111111 011245678899999778888889999999999864
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=7.2e-20 Score=161.06 Aligned_cols=236 Identities=21% Similarity=0.379 Sum_probs=182.8
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
+|...|+|+.|. ..|. ++++|+.|..++||..+++.++.+++||.+.|+.++.+. +..++++++.
T Consensus 188 gH~naVyca~fD--rtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~----------- 252 (1113)
T KOG0644|consen 188 GHRNAVYCAIFD--RTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASN----------- 252 (1113)
T ss_pred hhhhheeeeeec--cccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhccc-----------
Confidence 688899999887 8898 999999999999999999999999999999999999998 7789999999
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
|..|++|.+..+.++..+. +|++.|++|+|+| +.+.+.||++++||.+-...
T Consensus 253 --------------D~vIrvWrl~~~~pvsvLr---ghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~------ 304 (1113)
T KOG0644|consen 253 --------------DKVIRVWRLPDGAPVSVLR---GHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPR------ 304 (1113)
T ss_pred --------------CceEEEEecCCCchHHHHh---ccccceeeeccCc-----cccCCCCCceEecccccccc------
Confidence 9999999999999999998 8999999999999 33788999999999983100
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeE
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 318 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 318 (394)
...+.+..+. ....+.++.|. +.-+++++.|+.-..|...... .+...+.
T Consensus 305 ~y~prp~~~~-------------~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~~~~~li 356 (1113)
T KOG0644|consen 305 IYVPRPLKFT-------------EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------WRSNLLI 356 (1113)
T ss_pred ccCCCCCCcc-------------cccceeeeeccccccccccccCCcccccchhhHhh---------------hhccceE
Confidence 0001111100 11334455554 7788999999988888765332 1222233
Q ss_pred EEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCE-EEEeccCCeEEEEEcC
Q 016185 319 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGST-ILSCCEDGAIWRWDAI 392 (394)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~ 392 (394)
.+.++.+-. .+.+++-.+..+.+|++.++. +...+. +|...+..+.++|-... ..+++.||+..|||+-
T Consensus 357 f~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~--l~H~l~--ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 357 FVTRSSDLS-SIVVTARNDHRLCVWNLYTGQ--LLHNLM--GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred EEecccccc-ccceeeeeeeEeeeeecccch--hhhhhc--ccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 333333332 367777788899999999984 455555 88899999999996554 5589999999999984
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.4e-18 Score=144.85 Aligned_cols=231 Identities=15% Similarity=0.153 Sum_probs=169.8
Q ss_pred eEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCc
Q 016185 120 LHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHR 199 (394)
Q Consensus 120 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 199 (394)
..+.+.+|++.|+++.|+. ++.+|++|++ |-.+.|||.-..+.+..+.. +|.
T Consensus 42 lE~eL~GH~GCVN~LeWn~-dG~lL~SGSD-------------------------D~r~ivWd~~~~KllhsI~T--gHt 93 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNA-DGELLASGSD-------------------------DTRLIVWDPFEYKLLHSIST--GHT 93 (758)
T ss_pred hhhhhccccceecceeecC-CCCEEeecCC-------------------------cceEEeecchhcceeeeeec--ccc
Confidence 3467889999999999999 8899999999 99999999998888888885 899
Q ss_pred ccEEEEEecCC-CCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---C
Q 016185 200 NEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---G 275 (394)
Q Consensus 200 ~~i~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 275 (394)
..|.++.|-|. +..++++|..|..|+++|+...+...+ ......+......|...|..++.. +
T Consensus 94 aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~-------------d~~~~~~~~~~~cht~rVKria~~p~~P 160 (758)
T KOG1310|consen 94 ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM-------------DHGMEETTRCWSCHTDRVKRIATAPNGP 160 (758)
T ss_pred cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc-------------ccCccchhhhhhhhhhhhhheecCCCCC
Confidence 99999999993 457889999999999999987332111 111234566777888888888876 5
Q ss_pred cEEEEeecCCeEEEecCCCCCCCCCCC-cceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCC-----
Q 016185 276 DFILSKSVDNEIVLWEPKMKEQSPGEG-TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP----- 349 (394)
Q Consensus 276 ~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----- 349 (394)
..+.+++.||+|+-||++......... ....+..+...--...++.++|... .+|++|+.|-..++||.+...
T Consensus 161 htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s 239 (758)
T KOG1310|consen 161 HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRS 239 (758)
T ss_pred ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCC
Confidence 799999999999999999864322211 2222333333334678899999987 699999999999999943110
Q ss_pred -----------ceeeEEeccCCcc-----------CCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 350 -----------PVLIARLSHAQSK-----------SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 350 -----------~~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
..++..+. ++|. ..++-+.|+|+|.-|+..-....|+++|+..
T Consensus 240 ~~~~~~~pp~~~~cv~yf~-p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 240 DGTMNTCPPKDCRCVRYFS-PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CccccCCCCcccchhheec-CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 01122222 1221 1256688999997666655555899999864
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.4e-17 Score=134.81 Aligned_cols=255 Identities=14% Similarity=0.155 Sum_probs=182.2
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC------CeeEEEEE-ecCCceeEEEEcCCCCcEEEEceeeeEE
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------EKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKVIII 153 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~~i~~ 153 (394)
.|.+.|.++.|+ .+++ +|++|+.|..+++|++.. .+++.... .|...|.|++|.. +...+++|..
T Consensus 54 ~H~GCiNAlqFS--~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~---- 125 (609)
T KOG4227|consen 54 EHTGCINALQFS--HNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGER---- 125 (609)
T ss_pred hhccccceeeec--cCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCC----
Confidence 689999999988 7788 999999999999999864 24554444 3568999999998 7899999999
Q ss_pred eeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccc
Q 016185 154 SSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 233 (394)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 233 (394)
+++|...|+++.+.+..+... ...+.|+.+..+| ..+.|++.+.++.|.+||.+..+
T Consensus 126 ---------------------~~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 126 ---------------------WGTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ---------------------cceeEeeecccceeeeeeccc-CcccceeecccCC-CCceEEEEecCceEEEEeccCCC
Confidence 999999999999999888611 1234999999999 68889999999999999999843
Q ss_pred eeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccc
Q 016185 234 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY 310 (394)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 310 (394)
... ........+.....+.|+ +.+|++.+..+-+.+||.+.......... ....+
T Consensus 183 ~~~--------------------~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~--~~~~L 240 (609)
T KOG4227|consen 183 NPI--------------------SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRS--MFKGL 240 (609)
T ss_pred CCC--------------------ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhh--ccccC
Confidence 211 112222334445566665 77999999999999999997753211000 01112
Q ss_pred cCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCC----ccCCeeEEEeccCCCEEEEeccCCeE
Q 016185 311 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ----SKSPIRQTAMSYDGSTILSCCEDGAI 386 (394)
Q Consensus 311 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i 386 (394)
+.....-..+.|+|+| +.+.+--....-.+||+.+... .+.++.+.. ....+.+++|.-|. -+++|+.+-.|
T Consensus 241 ~~~~~~~M~~~~~~~G--~Q~msiRR~~~P~~~D~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i 316 (609)
T KOG4227|consen 241 PQENTEWMGSLWSPSG--NQFMSIRRGKCPLYFDFISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGI 316 (609)
T ss_pred cccchhhhheeeCCCC--CeehhhhccCCCEEeeeecccc-eeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccce
Confidence 2212233567899999 4666655555567788887542 334443211 12346677887654 49999999999
Q ss_pred EEEEcC
Q 016185 387 WRWDAI 392 (394)
Q Consensus 387 ~iwd~~ 392 (394)
++|.+-
T Consensus 317 ~~WklP 322 (609)
T KOG4227|consen 317 HIWKLP 322 (609)
T ss_pred EEEecC
Confidence 999874
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.7e-17 Score=139.28 Aligned_cols=299 Identities=14% Similarity=0.140 Sum_probs=201.9
Q ss_pred cCCcEEEEEcCCCceeEEeeec-------------------ccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECC
Q 016185 56 GGNRVTVYQCLEGGVIAALQSY-------------------VDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS 116 (394)
Q Consensus 56 ~~d~i~vw~~~~~~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 116 (394)
+-+.|+||++..++.+..+-.- ..-.+...-+.+..+ |||++++++|..-..|++||+.
T Consensus 5 s~NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s--~DGqY~lAtG~YKP~ikvydla 82 (703)
T KOG2321|consen 5 SVNDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVS--PDGQYLLATGTYKPQIKVYDLA 82 (703)
T ss_pred ccCceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEec--CCCcEEEEecccCCceEEEEcc
Confidence 3455888887766544332210 011344444555555 9999889999999999999997
Q ss_pred CCeeEEEEEecCCceeEEEEcCCCC-cEEEEceeeeEEee------------ccceeeeeeeccceeeeccCCcEEEEEe
Q 016185 117 NEKLHKSFVGHGDSINEIRTQPLKP-SLVVSASKVIIISS------------LSLICLLLFIRSNCLRVGQDESVRLWNV 183 (394)
Q Consensus 117 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~d~~i~vwd~ 183 (394)
+..+...-.-....|.-.-.+.+-. ..++-....|.++. .+.--...-+...++.++....|+-+++
T Consensus 83 nLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNL 162 (703)
T KOG2321|consen 83 NLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNL 162 (703)
T ss_pred cceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEc
Confidence 6543322221223333333333211 23333344444443 3333344445567888888889999999
Q ss_pred cCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeec
Q 016185 184 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 263 (394)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (394)
+.|+.+..+. .....++++..++ -..+|++|+.+|.|..||.++...-... .....+..
T Consensus 163 EqGrfL~P~~---~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l-----------------~~~~~v~s 221 (703)
T KOG2321|consen 163 EQGRFLNPFE---TDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTL-----------------DAASSVNS 221 (703)
T ss_pred cccccccccc---cccccceeeeecC-ccceEEecccCceEEEecchhhhhheee-----------------ecccccCC
Confidence 9999999988 5668999999999 8888999999999999999983210000 00111223
Q ss_pred CCC-----ceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC
Q 016185 264 HSN-----YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 336 (394)
Q Consensus 264 ~~~-----~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 336 (394)
|+. .|+++.|+ |-.+++|..+|.+.+||+++.++ .+..-.....+|..+.|.+.+..+.+++..
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--------l~~kdh~~e~pi~~l~~~~~~~q~~v~S~D- 292 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--------LLVKDHGYELPIKKLDWQDTDQQNKVVSMD- 292 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--------eeecccCCccceeeecccccCCCceEEecc-
Confidence 333 39999997 66899999999999999998874 444445566789999998875544555544
Q ss_pred CCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 337 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
...++|||-.++++ ...+. ....++.+|+-|++.++.++-.++.+..|=+
T Consensus 293 k~~~kiWd~~~Gk~--~asiE---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 293 KRILKIWDECTGKP--MASIE---PTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred hHHhhhcccccCCc--eeecc---ccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 56789999999863 34443 2256999999999999999988887766533
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1.3e-15 Score=120.25 Aligned_cols=278 Identities=15% Similarity=0.221 Sum_probs=183.1
Q ss_pred eeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC------Ce
Q 016185 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------GI 109 (394)
Q Consensus 36 v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d------g~ 109 (394)
..+++|+. |...++.|.++|.+||+++.-+.....+ .+.+.+..+..-+ -.+.+.+.|+.+ +.
T Consensus 8 ~lsvs~NQ----D~ScFava~~~Gfriyn~~P~ke~~~r~-----~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNk 76 (346)
T KOG2111|consen 8 TLSVSFNQ----DHSCFAVATDTGFRIYNCDPFKESASRQ-----FIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNK 76 (346)
T ss_pred eeEEEEcc----CCceEEEEecCceEEEecCchhhhhhhc-----cccCchhhhhHhh--hhceEEEecCCCCCCCCCce
Confidence 44589997 6778999999999999987633322222 1222222232221 122233445433 57
Q ss_pred EEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec-CCcE
Q 016185 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ-TGIC 188 (394)
Q Consensus 110 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~-~~~~ 188 (394)
|.|||=...+++.++. ...+|.++.+.+ ..++..- .+.|.||... +-+.
T Consensus 77 viIWDD~k~~~i~el~-f~~~I~~V~l~r---~riVvvl--------------------------~~~I~VytF~~n~k~ 126 (346)
T KOG2111|consen 77 VIIWDDLKERCIIELS-FNSEIKAVKLRR---DRIVVVL--------------------------ENKIYVYTFPDNPKL 126 (346)
T ss_pred EEEEecccCcEEEEEE-eccceeeEEEcC---CeEEEEe--------------------------cCeEEEEEcCCChhh
Confidence 9999966667777776 567899999987 3455544 6789999987 4556
Q ss_pred EEEeeccCCCcccEEEEEecCCCCeeEEe-eccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCc
Q 016185 189 ILIFAGAGGHRNEVLSVDFHPSDIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267 (394)
Q Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (394)
++.+... .......+++-.. +..+|+. |-.-|.|.+-|+...+ ..+...+..|...
T Consensus 127 l~~~et~-~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~---------------------~~~p~~I~AH~s~ 183 (346)
T KOG2111|consen 127 LHVIETR-SNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTK---------------------PNAPSIINAHDSD 183 (346)
T ss_pred eeeeecc-cCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhcC---------------------cCCceEEEcccCc
Confidence 6665521 1223344443332 3444444 3456999999998832 1145688999999
Q ss_pred eEEEEEe--CcEEEEeecCCe-EEEecCCCCCCCCCCCcceecccccC--CCCCeEEEEEeecCCcceEEEEeCCCcEEE
Q 016185 268 VDCNRWL--GDFILSKSVDNE-IVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFV 342 (394)
Q Consensus 268 i~~~~~~--~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 342 (394)
|.|++.+ |..+|+++..|+ ||+||.++++ .+.+++- ....|++++|+|+. .+||++++.|+|+|
T Consensus 184 Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~---------~l~E~RRG~d~A~iy~iaFSp~~--s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 184 IACVALNLQGTLVATASTKGTLIRIFDTEDGT---------LLQELRRGVDRADIYCIAFSPNS--SWLAVSSDKGTLHI 252 (346)
T ss_pred eeEEEEcCCccEEEEeccCcEEEEEEEcCCCc---------EeeeeecCCchheEEEEEeCCCc--cEEEEEcCCCeEEE
Confidence 9999998 999999999997 8999999987 3444432 34579999999999 69999999999999
Q ss_pred EEecCCCceee----------------------EEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 343 WELQSSPPVLI----------------------ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 343 wd~~~~~~~~~----------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
|.++....... .++. -..+...-++|-.+.+.++..+.||.-+-+.
T Consensus 253 F~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~--l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 253 FSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQ--LPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred EEeecCCCCccccccccccccccchhcccceeEEEEE--ccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 99976431111 0111 1124455567766645555566677655443
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=9.6e-18 Score=136.91 Aligned_cols=205 Identities=20% Similarity=0.203 Sum_probs=142.4
Q ss_pred EEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeecccee
Q 016185 91 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCL 170 (394)
Q Consensus 91 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~ 170 (394)
++++++|. .|++|+.||.+|||++.+...+.....|...|.++.|+| ++.+|++-+.
T Consensus 150 vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~--------------------- 206 (398)
T KOG0771|consen 150 VAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGA--------------------- 206 (398)
T ss_pred EEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecC---------------------
Confidence 34448998 999999999999999888888888888999999999999 8899999998
Q ss_pred eeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCC
Q 016185 171 RVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 250 (394)
Q Consensus 171 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 250 (394)
| ..+||++++|..+..... .........+.|.. ++ .. -.+++......
T Consensus 207 ----d-~~~VW~~~~g~~~a~~t~-~~k~~~~~~cRF~~-d~------~~-~~l~laa~~~~------------------ 254 (398)
T KOG0771|consen 207 ----D-SARVWSVNTGAALARKTP-FSKDEMFSSCRFSV-DN------AQ-ETLRLAASQFP------------------ 254 (398)
T ss_pred ----C-ceEEEEeccCchhhhcCC-cccchhhhhceecc-cC------CC-ceEEEEEecCC------------------
Confidence 8 999999999966655431 12223344455554 33 00 12333332220
Q ss_pred ccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcce
Q 016185 251 TKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 330 (394)
Q Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 330 (394)
+..+.. -.+.+|+-.+.- ..++.......|.+++.+++| ++
T Consensus 255 ------------------------~~~v~~----~~~~~w~~~~~l---------~~~~~~~~~~siSsl~VS~dG--kf 295 (398)
T KOG0771|consen 255 ------------------------GGGVRL----CDISLWSGSNFL---------RLRKKIKRFKSISSLAVSDDG--KF 295 (398)
T ss_pred ------------------------CCceeE----EEeeeecccccc---------chhhhhhccCcceeEEEcCCC--cE
Confidence 000000 112233332110 122222234478999999999 79
Q ss_pred EEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 331 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 331 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
++.|+.||.|.|++..+-+ .+.-. ...|...|+.+.|+||.+++++.+.|....|..+.
T Consensus 296 ~AlGT~dGsVai~~~~~lq--~~~~v-k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQ--RLQYV-KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeccCCcEEEEEeceee--eeEee-hhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999999999998764 22222 33788999999999999999999999988887664
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.1e-16 Score=144.78 Aligned_cols=281 Identities=10% Similarity=0.128 Sum_probs=185.6
Q ss_pred eecCCCceeeeecccccccceeeeeccC---ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCC--ceeEEee---
Q 016185 5 AIGCEPLVGSLTPSKKREYRVTNKLQEG---KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQ--- 75 (394)
Q Consensus 5 a~g~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~--~~~~~~~--- 75 (394)
++++....+.+.++... +....|..+ ...|+.+.+-.. .|-.++.+|+.|+ |+||+-... +..+.+.
T Consensus 1080 ~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe--~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~ 1155 (1387)
T KOG1517|consen 1080 AAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINE--QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS 1155 (1387)
T ss_pred EEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecc--cchhheeeeccCceEEEecccccccCCceeEEeec
Confidence 34444445455544432 223333322 456999998753 2568899999999 999985432 2222221
Q ss_pred ---ecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEe-cCCceeEEEEcCCCCcEEEEceeee
Q 016185 76 ---SYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKVI 151 (394)
Q Consensus 76 ---~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~~i 151 (394)
.......+.. ..++|. .... +|++++.-..|+|||.........+.. ....|+++.-+...+++++.|-.
T Consensus 1156 ~Ls~~~~~~r~~~-~v~dWq--Q~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa-- 1229 (1387)
T KOG1517|consen 1156 SLSDQLPGARGTG-LVVDWQ--QQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA-- 1229 (1387)
T ss_pred cccccCccCCCCC-eeeehh--hhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec--
Confidence 1211112222 446776 4444 566666688999999998888877763 45567888776656789999988
Q ss_pred EEeeccceeeeeeeccceeeeccCCcEEEEEecCCc---EEEEeeccCCCccc--EEEEEecCCCCeeEEeeccCCcEEE
Q 016185 152 IISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI---CILIFAGAGGHRNE--VLSVDFHPSDIYRIASCGMDNTVKI 226 (394)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~s~~~dg~v~i 226 (394)
||.|++||.+... .+...+ .|+.. |..+.+.+..-..|++|+.||.|++
T Consensus 1230 -----------------------DGsvRvyD~R~a~~ds~v~~~R---~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1230 -----------------------DGSVRVYDRRMAPPDSLVCVYR---EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred -----------------------CCceEEeecccCCccccceeec---ccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence 9999999998654 345555 68777 9999998833335999999999999
Q ss_pred EEccccceeeccccccCCCCCCCCccccccceeeeecCC---CceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCC
Q 016185 227 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS---NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 301 (394)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~ 301 (394)
||++.... .....+..|- +..+++..+ ...+++|+. +.|+||++...+.....
T Consensus 1284 ~DlR~~~~---------------------e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1284 LDLRMSSK---------------------ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred EecccCcc---------------------cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc
Confidence 99999311 0111122222 246666666 678899888 99999999876532222
Q ss_pred CcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 302 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 302 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
.....+ .-....+.+++|+|.. .++|+|+.|..|.||.....
T Consensus 1342 ~n~~F~---~q~~gs~scL~FHP~~--~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1342 YNPGFM---GQRIGSVSCLAFHPHR--LLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcccc---cCcCCCcceeeecchh--HhhhhccCCceEEEeecCCc
Confidence 111111 1123457899999998 78999999999999987765
No 205
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.3e-16 Score=126.45 Aligned_cols=304 Identities=15% Similarity=0.213 Sum_probs=194.2
Q ss_pred EEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC
Q 016185 38 AVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN 117 (394)
Q Consensus 38 ~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 117 (394)
-+.||| +|+++|+++.-++.|-|..+-+..+.+.. -+.|.-+.|. .|....|.....++.|.+|++..
T Consensus 13 ~c~fSp----~g~yiAs~~~yrlviRd~~tlq~~qlf~c------ldki~yieW~--ads~~ilC~~yk~~~vqvwsl~Q 80 (447)
T KOG4497|consen 13 FCSFSP----CGNYIASLSRYRLVIRDSETLQLHQLFLC------LDKIVYIEWK--ADSCHILCVAYKDPKVQVWSLVQ 80 (447)
T ss_pred ceeECC----CCCeeeeeeeeEEEEeccchhhHHHHHHH------HHHhhheeee--ccceeeeeeeeccceEEEEEeec
Confidence 467999 89999999988888989777665444332 2345568888 77775666778899999999999
Q ss_pred CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCC
Q 016185 118 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGG 197 (394)
Q Consensus 118 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 197 (394)
.+-...+.....++.+++|+|++..+|.+... +-.|.||.+.+.+....-.
T Consensus 81 pew~ckIdeg~agls~~~WSPdgrhiL~tseF-------------------------~lriTVWSL~t~~~~~~~~---- 131 (447)
T KOG4497|consen 81 PEWYCKIDEGQAGLSSISWSPDGRHILLTSEF-------------------------DLRITVWSLNTQKGYLLPH---- 131 (447)
T ss_pred ceeEEEeccCCCcceeeeECCCcceEeeeecc-------------------------eeEEEEEEeccceeEEecc----
Confidence 98888998888999999999966678888888 8888899887765543322
Q ss_pred CcccEEEEEecCCCCeeEEeeccCCcEEEEEccccc---eeecc--------ccccCCCCCCC--CccccccceeeeecC
Q 016185 198 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW---TYVEK--------SFTWTDLPSKF--PTKYVQFPVFIASVH 264 (394)
Q Consensus 198 ~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~ 264 (394)
....+..++|+| ++++.+.++.-...-.+++...+ ...+. ...|.+..... ........+ ...|
T Consensus 132 pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv--~aYe 208 (447)
T KOG4497|consen 132 PKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV--YAYE 208 (447)
T ss_pred cccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee--eeee
Confidence 344567888888 88877666543211111111000 00000 01111100000 000001111 1122
Q ss_pred -CCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCC-----------------------------------------
Q 016185 265 -SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG----------------------------------------- 300 (394)
Q Consensus 265 -~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~----------------------------------------- 300 (394)
.-.+..++|+ +++++.|+.|+.+|+.+--+-+...+
T Consensus 209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~ 288 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHI 288 (447)
T ss_pred eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCc
Confidence 2457778887 78999999999998866433221000
Q ss_pred ----------------CCcceecccccCCCCCeEEEEEeecCCcceEEEEeC--CCcEEEEEecCCCceeeEEeccCCcc
Q 016185 301 ----------------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR--EGKIFVWELQSSPPVLIARLSHAQSK 362 (394)
Q Consensus 301 ----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (394)
....++...++.+...+..++|++|. .++++-.. -+.+-+||++..+. ..+- ...
T Consensus 289 ~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds--~y~aTrnd~~PnalW~Wdlq~l~l---~avL--iQk 361 (447)
T KOG4497|consen 289 WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS--TYAATRNDKYPNALWLWDLQNLKL---HAVL--IQK 361 (447)
T ss_pred cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc--eEEeeecCCCCceEEEEechhhhh---hhhh--hhc
Confidence 00011112233445678889999999 46776543 36789999988642 2222 223
Q ss_pred CCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 363 SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 363 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
.+|....|+|....|+.+.....+++|...
T Consensus 362 ~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 362 HPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred cceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 689999999999999988888889999754
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=3.7e-17 Score=137.46 Aligned_cols=209 Identities=18% Similarity=0.241 Sum_probs=160.7
Q ss_pred ceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec
Q 016185 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (394)
Q Consensus 49 ~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 127 (394)
.+.|+.++.|+ +.|.+ +.++..+.+. .|.+.+.+-.|+ |||. -|+++++||.|++|. ++|-...++...
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~-----AH~~A~~~gRW~--~dGt-gLlt~GEDG~iKiWS-rsGMLRStl~Q~ 144 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSIS-----AHAAAISSGRWS--PDGA-GLLTAGEDGVIKIWS-RSGMLRSTVVQN 144 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhh-----hhhhhhhhcccC--CCCc-eeeeecCCceEEEEe-ccchHHHHHhhc
Confidence 35666666666 88887 6666666666 788899999999 9999 999999999999998 566555555566
Q ss_pred CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEe
Q 016185 128 GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 207 (394)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~ 207 (394)
..+|.|++|.|+..+.+++.+. .+.|=-+.....+-..+ +|.+-|.++.|
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~g~---------------------------h~~IKpL~~n~k~i~Wk---AHDGiiL~~~W 194 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQGG---------------------------HISIKPLAANSKIIRWR---AHDGLVLSLSW 194 (737)
T ss_pred CceeEEEEECCCCCceEEecCC---------------------------eEEEeecccccceeEEe---ccCcEEEEeec
Confidence 7899999999977777777654 56665666566666677 79999999999
Q ss_pred cCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeE
Q 016185 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEI 287 (394)
Q Consensus 208 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i 287 (394)
++ ..+++++|+.|-..++||-.. .++.....|..+|++++|.++.++..+.-.++
T Consensus 195 ~~-~s~lI~sgGED~kfKvWD~~G------------------------~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~ 249 (737)
T KOG1524|consen 195 ST-QSNIIASGGEDFRFKIWDAQG------------------------ANLFTSAAEEYAITSVAFNPEKDYLLWSYNTA 249 (737)
T ss_pred Cc-cccceeecCCceeEEeecccC------------------------cccccCChhccceeeeeeccccceeeeeeeee
Confidence 99 889999999999999999876 34667778999999999995544432323333
Q ss_pred EEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEE
Q 016185 288 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 344 (394)
Q Consensus 288 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd 344 (394)
++= ....+.|..++||+|| ..+++|+..|.+.+=.
T Consensus 250 R~~--------------------~p~~GSifnlsWS~DG--TQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 250 RFS--------------------SPRVGSIFNLSWSADG--TQATCGTSTGQLIVAY 284 (737)
T ss_pred eec--------------------CCCccceEEEEEcCCC--ceeeccccCceEEEee
Confidence 311 2234578999999999 6899999888876544
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.5e-15 Score=121.94 Aligned_cols=289 Identities=17% Similarity=0.205 Sum_probs=182.4
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
.-.+..++|++ .-..+|++..|. |++|+-.. .....++. .....|.+++|. |.+...|+.|+..| |.
T Consensus 98 ~~dlr~~aWhq----H~~~fava~nddvVriy~kss-t~pt~Lks----~sQrnvtclawR--PlsaselavgCr~g-Ic 165 (445)
T KOG2139|consen 98 EIDLRGVAWHQ----HIIAFAVATNDDVVRIYDKSS-TCPTKLKS----VSQRNVTCLAWR--PLSASELAVGCRAG-IC 165 (445)
T ss_pred hcceeeEeech----hhhhhhhhccCcEEEEeccCC-CCCceecc----hhhcceeEEEec--cCCcceeeeeecce-eE
Confidence 34678899998 455677777766 99999555 44445553 456789999999 66554788887665 89
Q ss_pred EEECCCC----ee----------EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCc
Q 016185 112 VIDVSNE----KL----------HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDES 177 (394)
Q Consensus 112 vwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (394)
+|..... +. +....+| .+|++|.|++ ++..+++++. .|..
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~------------------------gsss 219 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASF------------------------GSSS 219 (445)
T ss_pred EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeeccc------------------------Ccce
Confidence 9986421 11 1122345 6899999999 6788888775 2778
Q ss_pred EEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccc
Q 016185 178 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 257 (394)
Q Consensus 178 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (394)
|.|||+.++..+.... ...+.++-+.|+| |+.+|+++..|+..++|+......
T Consensus 220 i~iWdpdtg~~~pL~~---~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt----------------------- 272 (445)
T KOG2139|consen 220 IMIWDPDTGQKIPLIP---KGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWT----------------------- 272 (445)
T ss_pred EEEEcCCCCCcccccc---cCCCceeeEEEcC-CCCEEEEecccceeeeehhcccce-----------------------
Confidence 9999999998776653 3567888999999 999999999999999996655211
Q ss_pred eeeeecCCCceEEEEEe--CcEEE-EeecCCeEEEecCCCCCCCCCCC------cceecccc---------cCCCCCeEE
Q 016185 258 VFIASVHSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEG------TADILQKY---------PVPECDIWF 319 (394)
Q Consensus 258 ~~~~~~~~~~i~~~~~~--~~~l~-~~~~dg~i~~~d~~~~~~~~~~~------~~~~~~~~---------~~~~~~i~~ 319 (394)
......-.+.|....|+ |++|+ +.+.. -++|.+.-..+..... ...++..+ ..-.+++.+
T Consensus 273 ~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~ 350 (445)
T KOG2139|consen 273 KERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQC 350 (445)
T ss_pred ecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccce
Confidence 11122233467777776 55444 33333 2333333222111000 00011111 111356889
Q ss_pred EEEeecCCcceEEEEeCCC--------cEEEEEecCCCceeeEEeccCCccCCeeEEEecc---CCCEEEEeccCCeEEE
Q 016185 320 IKFSCDFHYNAAAIGNREG--------KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY---DGSTILSCCEDGAIWR 388 (394)
Q Consensus 320 ~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~i 388 (394)
++|.|.| .+||+.-..+ .|.+||.+...+.... +...........+.|+| ++.+|..+=..|.+.-
T Consensus 351 lawDpsG--eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels-~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ 427 (445)
T KOG2139|consen 351 LAWDPSG--EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS-YCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQR 427 (445)
T ss_pred eeECCCC--CEEEEEEcCCchhhhhhhhhhhhcccccCceEEE-ecccccCCCCceEEeeecccCCcEEEEEeccCceEe
Confidence 9999999 5788765543 3677887765332222 11111112355577776 5677777777888877
Q ss_pred EEc
Q 016185 389 WDA 391 (394)
Q Consensus 389 wd~ 391 (394)
|++
T Consensus 428 ypl 430 (445)
T KOG2139|consen 428 YPL 430 (445)
T ss_pred eee
Confidence 765
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=3.3e-15 Score=117.95 Aligned_cols=240 Identities=13% Similarity=0.162 Sum_probs=159.8
Q ss_pred EEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCC--ceeEEEEcCCCCcEEE-Ecee-eeEEeeccceeeee
Q 016185 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD--SINEIRTQPLKPSLVV-SASK-VIIISSLSLICLLL 163 (394)
Q Consensus 88 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~-s~~~-~i~~~~~~~~~~~~ 163 (394)
.++|. .|.. .+++|..+| .+||+.+.-+...+.+.+.+ .+.-|-|-- ++|+ .|+. .-+.
T Consensus 10 svs~N--QD~S-cFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky---------- 72 (346)
T KOG2111|consen 10 SVSFN--QDHS-CFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKY---------- 72 (346)
T ss_pred EEEEc--cCCc-eEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCC----------
Confidence 35555 7777 666666555 89999876444333332222 222232321 3333 3332 0000
Q ss_pred eeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccC
Q 016185 164 FIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 243 (394)
Q Consensus 164 ~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 243 (394)
.-..|.|||-...+++.++. ...+|.++.+.+ + .+++. ..+.|++|.+.+..+..
T Consensus 73 ----------~pNkviIWDD~k~~~i~el~----f~~~I~~V~l~r-~--riVvv-l~~~I~VytF~~n~k~l------- 127 (346)
T KOG2111|consen 73 ----------PPNKVIIWDDLKERCIIELS----FNSEIKAVKLRR-D--RIVVV-LENKIYVYTFPDNPKLL------- 127 (346)
T ss_pred ----------CCceEEEEecccCcEEEEEE----eccceeeEEEcC-C--eEEEE-ecCeEEEEEcCCChhhe-------
Confidence 02579999977778888886 889999999986 3 34443 36789999998522110
Q ss_pred CCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEE-eecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE
Q 016185 244 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 320 (394)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (394)
.++ .....+..+.++... ..+|+. |-.-|.|.+-|+...+.. ....+..|.+.|.++
T Consensus 128 ------------~~~-et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-------~p~~I~AH~s~Iacv 187 (346)
T KOG2111|consen 128 ------------HVI-ETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-------APSIINAHDSDIACV 187 (346)
T ss_pred ------------eee-ecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC-------CceEEEcccCceeEE
Confidence 011 111122334444443 223333 345799999999876521 235567899999999
Q ss_pred EEeecCCcceEEEEeCCCc-EEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 321 KFSCDFHYNAAAIGNREGK-IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 321 ~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+.+.+| .++|+++..|+ |||||..+++ ++.++........|.+++|||+..+||++|+-|+|+|+.++.
T Consensus 188 ~Ln~~G--t~vATaStkGTLIRIFdt~~g~--~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 188 ALNLQG--TLVATASTKGTLIRIFDTEDGT--LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEcCCc--cEEEEeccCcEEEEEEEcCCCc--EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999 79999999998 5999999995 566676445567899999999999999999999999999875
No 209
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1.6e-14 Score=124.78 Aligned_cols=277 Identities=11% Similarity=0.087 Sum_probs=159.8
Q ss_pred Cceeeeeccc-ccccceeeeeccCccceeEEEEEeeCCCcceEEEEecC-Cc-EEEEEcCCCceeEEeeecccCCcccce
Q 016185 10 PLVGSLTPSK-KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESF 86 (394)
Q Consensus 10 ~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~-d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v 86 (394)
+..+.+.... ...++....+. +.+....++++| ++++|++++. ++ |.+|++.....+....... .....
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp----d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~~~~p 82 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP----DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---LPGSP 82 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC----CCCEEEEEECCCCcEEEEEECCCCceEEeeeec---CCCCc
Confidence 3444444332 23445555554 345678899999 6787766544 34 9999987432233332221 12233
Q ss_pred EEEEEEEcCCCCcEEEEee-cCCeEEEEECCC-Ce---eEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 87 YTVSWACNVDGIPFLVAGG-INGIIRVIDVSN-EK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 87 ~~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
..+++. |+++ ++++++ .++.|.+|++++ +. .+..+. +......++++|++..++++...
T Consensus 83 ~~i~~~--~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~------------ 146 (330)
T PRK11028 83 THISTD--HQGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLK------------ 146 (330)
T ss_pred eEEEEC--CCCC-EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCC------------
Confidence 445555 9999 666554 589999999964 32 233332 23446778899944444456666
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEE-----eeccCCCcccEEEEEecCCCCeeEEeecc-CCcEEEEEcccccee
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILI-----FAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTY 235 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~ 235 (394)
++.|.+||+++...+.. ... ........++|+| ++++++++.. ++.|.+|++......
T Consensus 147 -------------~~~v~v~d~~~~g~l~~~~~~~~~~--~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 147 -------------EDRIRLFTLSDDGHLVAQEPAEVTT--VEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred -------------CCEEEEEEECCCCcccccCCCceec--CCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 89999999976432211 110 1234467899999 8888877765 899999999742110
Q ss_pred eccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEee-cCCeEEEecCCCCCCCCCCCcceecccccC
Q 016185 236 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPV 312 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 312 (394)
.+........+.. ..+......+.++ +++++++. .++.|.+|++..... ....+.....
T Consensus 211 ~~~~~~~~~~p~~-------------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-----~~~~~~~~~~ 272 (330)
T PRK11028 211 IECVQTLDMMPAD-------------FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS-----VLSFEGHQPT 272 (330)
T ss_pred EEEEEEEecCCCc-------------CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-----eEEEeEEEec
Confidence 1000000000000 0011122345554 77787775 478999999865421 1112222222
Q ss_pred CCCCeEEEEEeecCCcceEEEEe-CCCcEEEEEecC
Q 016185 313 PECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQS 347 (394)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 347 (394)
. .....+.++|+++ +|+++. .+++|.+|++..
T Consensus 273 ~-~~p~~~~~~~dg~--~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 273 E-TQPRGFNIDHSGK--YLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred c-ccCCceEECCCCC--EEEEEEccCCcEEEEEEcC
Confidence 1 2345789999994 666555 489999998864
No 210
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.74 E-value=2.5e-16 Score=125.39 Aligned_cols=251 Identities=13% Similarity=0.213 Sum_probs=184.5
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEc-CCCceeEEeeecccCCcccceEEEEEEEcCCCC
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQC-LEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (394)
.++.+.+.++||.+.|+....-| ..+-+.+.+.|. ++||-- +.++....+..+ ...++.++++. ++..
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~----~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~----mP~~~~~~~y~--~e~~ 81 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIP----KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY----MPSPCSAMEYV--SESR 81 (404)
T ss_pred cchhhhhhhcCchhhhhhheecc----CCCCeEEccccceeeeEEeccccccCchhhhh----CCCCceEeeee--ccce
Confidence 34556677899999999998888 456788899998 999963 355555555532 23345555554 7887
Q ss_pred cEEEEeecCCeEEEEECC----CCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeecc
Q 016185 99 PFLVAGGINGIIRVIDVS----NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQ 174 (394)
Q Consensus 99 ~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
.|+.|-.+|++.-+.+. .....+....|...+..+-|+. ....+++.+.
T Consensus 82 -~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~------------------------- 134 (404)
T KOG1409|consen 82 -RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGK------------------------- 134 (404)
T ss_pred -EEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEecc-------------------------
Confidence 99999999999988764 3355677778999999999998 7788888888
Q ss_pred CCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccc
Q 016185 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 254 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (394)
|..+.---.+.+..+..+. .....+++.+.- . +...|...|.|..-.+....
T Consensus 135 dk~~~~hc~e~~~~lg~Y~----~~~~~t~~~~d~-~--~~fvGd~~gqvt~lr~~~~~--------------------- 186 (404)
T KOG1409|consen 135 DKQFAWHCTESGNRLGGYN----FETPASALQFDA-L--YAFVGDHSGQITMLKLEQNG--------------------- 186 (404)
T ss_pred ccceEEEeeccCCcccceE----eeccCCCCceee-E--EEEecccccceEEEEEeecC---------------------
Confidence 8877655555565544333 222333333332 2 55666677777776665522
Q ss_pred ccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEE
Q 016185 255 QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 332 (394)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 332 (394)
-.++..+.+|.+.+.++.|+ ...++++..|..+.+||+-..+. ......+|...|..+...+-- ..+.
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g--------~~~el~gh~~kV~~l~~~~~t--~~l~ 256 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG--------TAYELQGHNDKVQALSYAQHT--RQLI 256 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc--------eeeeeccchhhhhhhhhhhhh--eeee
Confidence 34678899999999999998 66999999999999999986643 445667777788888777776 6899
Q ss_pred EEeCCCcEEEEEec
Q 016185 333 IGNREGKIFVWELQ 346 (394)
Q Consensus 333 ~~~~dg~i~iwd~~ 346 (394)
+++.||.|.+||++
T Consensus 257 S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 257 SCGEDGGIVVWNMN 270 (404)
T ss_pred eccCCCeEEEEecc
Confidence 99999999999984
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.73 E-value=2.3e-14 Score=123.40 Aligned_cols=306 Identities=15% Similarity=0.137 Sum_probs=180.0
Q ss_pred ccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCC
Q 016185 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (394)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (394)
....+....+......-..++|+| ||++++.++.|+ |.++|+.+++.+.+++. ...-..++++ +||+
T Consensus 23 ~~t~~~~~~i~~~~~~h~~~~~s~----Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------G~~~~~i~~s--~DG~ 90 (369)
T PF02239_consen 23 GATNKVVARIPTGGAPHAGLKFSP----DGRYLYVANRDGTVSVIDLATGKVVATIKV------GGNPRGIAVS--PDGK 90 (369)
T ss_dssp TTT-SEEEEEE-STTEEEEEE-TT-----SSEEEEEETTSEEEEEETTSSSEEEEEE-------SSEEEEEEE----TTT
T ss_pred CCCCeEEEEEcCCCCceeEEEecC----CCCEEEEEcCCCeEEEEECCcccEEEEEec------CCCcceEEEc--CCCC
Confidence 344566677765444445577888 788888888887 99999999999888873 2234556666 9999
Q ss_pred cEEEEe-ecCCeEEEEECCCCeeEEEEEec-------CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeecccee
Q 016185 99 PFLVAG-GINGIIRVIDVSNEKLHKSFVGH-------GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCL 170 (394)
Q Consensus 99 ~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~ 170 (394)
+++++ ...+.+.++|.++.+.++.+... ...+..+..+|....++++--+
T Consensus 91 -~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--------------------- 148 (369)
T PF02239_consen 91 -YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--------------------- 148 (369)
T ss_dssp -EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT---------------------
T ss_pred -EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc---------------------
Confidence 55554 57899999999999999888743 2356778778844445555554
Q ss_pred eeccCCcEEEEEecCCcEE--EEeeccCCCcccEEEEEecCCCCeeEEe-eccCCcEEEEEccccceeeccccccCCCCC
Q 016185 171 RVGQDESVRLWNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 247 (394)
Q Consensus 171 ~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 247 (394)
.+.|.+.|....+.+ ..+. .........|+| ++++++. ...+..|-++|..+.+..........+
T Consensus 149 ----~~~I~vVdy~d~~~~~~~~i~----~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p--- 216 (369)
T PF02239_consen 149 ----TGEIWVVDYSDPKNLKVTTIK----VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP--- 216 (369)
T ss_dssp ----TTEEEEEETTTSSCEEEEEEE------TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB---
T ss_pred ----CCeEEEEEeccccccceeeec----ccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccc---
Confidence 578888887665433 3333 455677899999 8776655 566789999999885432211110000
Q ss_pred CCCccccccceeeeecCCCc--eEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeec
Q 016185 248 KFPTKYVQFPVFIASVHSNY--VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 325 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (394)
...+...+ .|... ++...-.+...++.-....+.+||..+.+ .++++.....+ ..+..+|+
T Consensus 217 ------~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk---------vv~~I~~~G~g-lFi~thP~ 279 (369)
T PF02239_consen 217 ------HPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK---------VVKTIPTQGGG-LFIKTHPD 279 (369)
T ss_dssp ------EETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS---------EEEEEE-SSSS---EE--TT
T ss_pred ------cccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCe---------EEEEEECCCCc-ceeecCCC
Confidence 00111111 13322 22222224444444444566678887766 67777776666 78899999
Q ss_pred CCcceEEEE----eCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEecc--CCeEEEEEcCC
Q 016185 326 FHYNAAAIG----NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE--DGAIWRWDAIP 393 (394)
Q Consensus 326 ~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~ 393 (394)
+ +++++. ...+.|.++|.++. .....+.. +....+..+.|+++|+.+..+.. ++.|.|||..+
T Consensus 280 s--~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i~~-~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 280 S--RYVWVDTFLNPDADTVQVIDKKTL--KVVKTITP-GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp ---SEEEEE-TT-SSHT-EEEEECCGT--EEEE-HHH-HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred C--ccEEeeccCCCCCceEEEEECcCc--ceeEEEec-cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 9 577776 55689999999987 34555541 11134889999999997765544 34799999876
No 212
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.1e-15 Score=123.73 Aligned_cols=252 Identities=14% Similarity=0.191 Sum_probs=181.8
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEE------EecCCceeEEEEcCCCCcEEEEceeeeEEee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF------VGHGDSINEIRTQPLKPSLVVSASKVIIISS 155 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~ 155 (394)
....+..++|...+..+ .+...+.+-.+..+.+....+...+ .....+|..++... ..|++|-.
T Consensus 54 ~~~ris~l~~~~d~~te-vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~------ 123 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETE-VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVS------ 123 (412)
T ss_pred hhhhhhhheeecCCcee-EeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEec------
Confidence 45677788888555554 5555557777888877766554443 34456777776653 35556666
Q ss_pred ccceeeeeeeccceeeeccCCcEEEEEecCCc----EEEEeeccCCCcccEEEEEecCCCCeeEEeeccC--CcEEEEEc
Q 016185 156 LSLICLLLFIRSNCLRVGQDESVRLWNVQTGI----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD--NTVKIWSM 229 (394)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d--g~v~iwd~ 229 (394)
+|.+.+|....+. .+..+. ....+..+.-++.....+++|+.. ..+++||+
T Consensus 124 -------------------sG~l~~~~~k~~d~hss~l~~la----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 124 -------------------SGNLQVRHDKSGDLHSSKLIKLA----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred -------------------CCcEEEEeccCCccccccceeee----cCCceeeeccCCCCCceEecCchhcccceeeeec
Confidence 9999999987443 223333 335666677777566778889999 89999999
Q ss_pred cccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe----CcEEEEeecCCeEEEecCCCCCCCCCCCcce
Q 016185 230 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD 305 (394)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 305 (394)
.+.++.... . +.+...... .-+-+++++.|- ...|++++.-+.+++||.+.++.
T Consensus 181 e~~~qiw~a------K--NvpnD~L~L------rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-------- 238 (412)
T KOG3881|consen 181 EQSKQIWSA------K--NVPNDRLGL------RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-------- 238 (412)
T ss_pred ccceeeeec------c--CCCCccccc------eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc--------
Confidence 985322111 0 001111111 113356677775 45899999999999999998765
Q ss_pred ecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCe
Q 016185 306 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA 385 (394)
Q Consensus 306 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 385 (394)
++..+...+.+++++...|++ +.+++|..-+.+..||++.+. .....+. +..+.|+++..+|.+++||++|-|..
T Consensus 239 PV~~fd~~E~~is~~~l~p~g--n~Iy~gn~~g~l~~FD~r~~k-l~g~~~k--g~tGsirsih~hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 239 PVAQFDFLENPISSTGLTPSG--NFIYTGNTKGQLAKFDLRGGK-LLGCGLK--GITGSIRSIHCHPTHPVLASCGLDRY 313 (412)
T ss_pred ceeEeccccCcceeeeecCCC--cEEEEecccchhheecccCce-eeccccC--CccCCcceEEEcCCCceEEeecccee
Confidence 677778888999999999999 689999999999999999884 2333366 77899999999999999999999999
Q ss_pred EEEEEcCC
Q 016185 386 IWRWDAIP 393 (394)
Q Consensus 386 i~iwd~~~ 393 (394)
|||+|+.+
T Consensus 314 vRIhD~kt 321 (412)
T KOG3881|consen 314 VRIHDIKT 321 (412)
T ss_pred EEEeeccc
Confidence 99999976
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=2.2e-15 Score=118.98 Aligned_cols=235 Identities=11% Similarity=0.157 Sum_probs=174.0
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC---eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccc
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSL 158 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~ 158 (394)
..++|++.+|. +|.. .+|.+..+..|.||..... +..+++..|...|+.++|+| ..+.|++|+.
T Consensus 9 ~~~pitchAwn--~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~--------- 75 (361)
T KOG1523|consen 9 LLEPITCHAWN--SDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSH--------- 75 (361)
T ss_pred ccCceeeeeec--CCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccC---------
Confidence 35689999998 8898 9999999999999987654 46788899999999999999 7889999999
Q ss_pred eeeeeeeccceeeeccCCcEEEEEec-CCc--EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEcccccee
Q 016185 159 ICLLLFIRSNCLRVGQDESVRLWNVQ-TGI--CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY 235 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~vwd~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 235 (394)
|..-+||... .++ +...+. .++...+++.|+| .++.|++|+.-..|.+|-++....-
T Consensus 76 ----------------drnayVw~~~~~~~WkptlvLl---RiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 76 ----------------DRNAYVWTQPSGGTWKPTLVLL---RINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDW 135 (361)
T ss_pred ----------------CCCccccccCCCCeeccceeEE---EeccceeeEeecC-cCceEEeccCccEEEEEEEecccce
Confidence 9999999984 343 233333 4889999999999 9999999999999999988773210
Q ss_pred eccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCC-----CC----CCCCcc
Q 016185 236 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE-----QS----PGEGTA 304 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~-----~~----~~~~~~ 304 (394)
-.....-+.+...|.+++|+ +-++++|+.|+..++|..--.. .. ......
T Consensus 136 -------------------WVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG 196 (361)
T KOG1523|consen 136 -------------------WVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFG 196 (361)
T ss_pred -------------------ehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHH
Confidence 00111223456778899998 4488899999999998643211 10 111233
Q ss_pred eecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccC
Q 016185 305 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 373 (394)
Q Consensus 305 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 373 (394)
+.+.++....+.+..+.|+|+| ..|+-.+.|..+.+-|.....+ .+..+. ...-+..++.|-.+
T Consensus 197 ~lm~E~~~~ggwvh~v~fs~sG--~~lawv~Hds~v~~~da~~p~~-~v~~~~--~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 197 QLMSEASSSGGWVHGVLFSPSG--NRLAWVGHDSTVSFVDAAGPSE-RVQSVA--TAQLPLLSVSWISE 260 (361)
T ss_pred HHHHhhccCCCceeeeEeCCCC--CEeeEecCCCceEEeecCCCch-hccchh--hccCCceeeEeecC
Confidence 4556666667789999999999 6899999999999999877642 222222 11156667766544
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2e-15 Score=122.29 Aligned_cols=271 Identities=12% Similarity=0.163 Sum_probs=196.8
Q ss_pred CccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeec-ccCCcccceEEEEEEEcCCCCcEEEEeecCCe
Q 016185 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSY-VDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (394)
Q Consensus 32 h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 109 (394)
-...|..++|.- ++ ..+.+...+.+. +..+.....+....+... .......+|-.++. .+| .|++|-.+|.
T Consensus 54 ~~~ris~l~~~~-d~-~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg--~Litc~~sG~ 126 (412)
T KOG3881|consen 54 ELDRISSLLFGV-DG-ETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADG--TLITCVSSGN 126 (412)
T ss_pred hhhhhhhheeec-CC-ceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCC--EEEEEecCCc
Confidence 356788899984 32 467777775555 777777666554443100 00123455555554 345 6888999999
Q ss_pred EEEEECCCC----eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccC--CcEEEEEe
Q 016185 110 IRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQD--ESVRLWNV 183 (394)
Q Consensus 110 i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d--~~i~vwd~ 183 (394)
+.+|..+.+ ..+..+..+ ..+..+.-.+....++++|+. . ..+.+||+
T Consensus 127 l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGk-------------------------e~~n~lkiwdl 180 (412)
T KOG3881|consen 127 LQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGK-------------------------ENINELKIWDL 180 (412)
T ss_pred EEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCch-------------------------hcccceeeeec
Confidence 999998743 234444444 457778888877888888998 7 78999999
Q ss_pred cCCcEEEEeeccCC------CcccEEEEEecCCC--CeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccc
Q 016185 184 QTGICILIFAGAGG------HRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 255 (394)
Q Consensus 184 ~~~~~~~~~~~~~~------~~~~i~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (394)
++.+.+..-++... -.-.++++.|-+ . ...|++++.-+.+++||.+.. .
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q----------------------R 237 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ----------------------R 237 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc----------------------C
Confidence 88866555442111 123578899988 6 788999999999999999973 4
Q ss_pred cceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEE
Q 016185 256 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 333 (394)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 333 (394)
.|+..+..-..+++++... ++++++|..-|.+..||++.++. ....+.+-.+.|.++..+|.. .++++
T Consensus 238 RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--------~g~~~kg~tGsirsih~hp~~--~~las 307 (412)
T KOG3881|consen 238 RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--------LGCGLKGITGSIRSIHCHPTH--PVLAS 307 (412)
T ss_pred cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--------eccccCCccCCcceEEEcCCC--ceEEe
Confidence 5788888888888888775 88999999999999999998873 344477888899999999998 69999
Q ss_pred EeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccC
Q 016185 334 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 373 (394)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 373 (394)
++-|..|||+|+.+.+ ++...... +.++.+-+.++
T Consensus 308 ~GLDRyvRIhD~ktrk--ll~kvYvK---s~lt~il~~~~ 342 (412)
T KOG3881|consen 308 CGLDRYVRIHDIKTRK--LLHKVYVK---SRLTFILLRDD 342 (412)
T ss_pred eccceeEEEeecccch--hhhhhhhh---ccccEEEecCC
Confidence 9999999999999853 33332211 45666666544
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=7.5e-17 Score=133.23 Aligned_cols=226 Identities=16% Similarity=0.223 Sum_probs=177.0
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeec
Q 016185 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIR 166 (394)
Q Consensus 87 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~ 166 (394)
+.+.++ .+|+ +|+.|+.-|.|..+|+.++++...+.. ...|.++.|.. +.+++|.+-
T Consensus 133 Y~~~yt--rnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LH-neq~~AVAQ------------------ 189 (545)
T KOG1272|consen 133 YHLDYT--RNGR-HLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLH-NEQFFAVAQ------------------ 189 (545)
T ss_pred eeeeec--CCcc-EEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhc-chHHHHhhh------------------
Confidence 345555 8999 999999999999999999999888874 45789999988 667777776
Q ss_pred cceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCC
Q 016185 167 SNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP 246 (394)
Q Consensus 167 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 246 (394)
...+.|||- .|..+..++ ...+|..+.|.| ..-+|++++..|.++.-|+.+++.
T Consensus 190 --------K~y~yvYD~-~GtElHClk----~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gkl------------ 243 (545)
T KOG1272|consen 190 --------KKYVYVYDN-NGTELHCLK----RHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKL------------ 243 (545)
T ss_pred --------hceEEEecC-CCcEEeehh----hcCchhhhcccc-hhheeeecccCCceEEEeechhhh------------
Confidence 689999994 688888887 567899999999 889999999999999999999553
Q ss_pred CCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEee
Q 016185 247 SKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 324 (394)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 324 (394)
+..+..-.+.+..+.-+ ...+-+|...|+|.+|...+.+ ++.++..|.++|.++++.+
T Consensus 244 -----------Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske---------PLvKiLcH~g~V~siAv~~ 303 (545)
T KOG1272|consen 244 -----------VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE---------PLVKILCHRGPVSSIAVDR 303 (545)
T ss_pred -----------hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc---------hHHHHHhcCCCcceEEECC
Confidence 33333333444444433 4577788999999999998776 6788889999999999999
Q ss_pred cCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 325 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 325 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
+| .+++|.+.|..++|||++... .+..+.. .-+...+++|..| +||.+ .-..|.||.
T Consensus 304 ~G--~YMaTtG~Dr~~kIWDlR~~~--ql~t~~t---p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 304 GG--RYMATTGLDRKVKIWDLRNFY--QLHTYRT---PHPASNLSLSQKG-LLALS-YGDHVQIWK 360 (545)
T ss_pred CC--cEEeecccccceeEeeecccc--ccceeec---CCCcccccccccc-ceeee-cCCeeeeeh
Confidence 99 699999999999999999874 3333331 2457778888664 34433 444788884
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.8e-16 Score=129.30 Aligned_cols=258 Identities=15% Similarity=0.184 Sum_probs=184.9
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEE-ecCCceeEEEEcCCCC-cEEEEceeeeEEeeccc
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKP-SLVVSASKVIIISSLSL 158 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~l~s~~~~i~~~~~~~ 158 (394)
.|.+.|..+.|. ..|. .|++|+.|..|.+||+..++....+. +|...|..-.|.|..+ .-+++++.
T Consensus 140 ~H~GcVntV~FN--~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~--------- 207 (559)
T KOG1334|consen 140 KHKGCVNTVHFN--QRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR--------- 207 (559)
T ss_pred CCCCccceeeec--ccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc---------
Confidence 789999999887 8898 99999999999999999988877775 7888888888888533 56788888
Q ss_pred eeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecc
Q 016185 159 ICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 238 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 238 (394)
||.+++=.+.........+.+..|.++|..++..|.+...|.+++.|+.+.-+|++.....
T Consensus 208 ----------------dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa--- 268 (559)
T KOG1334|consen 208 ----------------DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA--- 268 (559)
T ss_pred ----------------cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc---
Confidence 9999998775443333222223699999999999988899999999999999999983211
Q ss_pred ccccCCCCCCCCccccccceeeeecCCC---ceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceeccccc-
Q 016185 239 SFTWTDLPSKFPTKYVQFPVFIASVHSN---YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP- 311 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~- 311 (394)
..+.....+.. ....++.+ ...+++++.|-.+++||.+........+ .+.++.
T Consensus 269 -----------------~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~---~~~~f~p 328 (559)
T KOG1334|consen 269 -----------------EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG---VLDKFCP 328 (559)
T ss_pred -----------------ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc---hhhhcCC
Confidence 01112222232 34455555 5589999999999999998765432222 122222
Q ss_pred -----CCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCc----------eeeEE-eccCCccC--CeeEEEe-cc
Q 016185 312 -----VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP----------VLIAR-LSHAQSKS--PIRQTAM-SY 372 (394)
Q Consensus 312 -----~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~-~~~~~~~~--~v~~~~~-s~ 372 (394)
...-.|++++|+.++. -|.++..|-.|+++.-.-+.. ..+.. ++ +|.. .|..+-| -|
T Consensus 329 ~hl~~d~~v~ITgl~Ysh~~s--ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK--GHrN~~TVKgVNFfGP 404 (559)
T KOG1334|consen 329 HHLVEDDPVNITGLVYSHDGS--ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK--GHRNSRTVKGVNFFGP 404 (559)
T ss_pred ccccccCcccceeEEecCCcc--ceeeeecccceEEeccccccCCCCCCCcchhhccchhhc--ccccccccceeeeccC
Confidence 2234699999998874 456666677899996543321 12222 44 5543 4666655 48
Q ss_pred CCCEEEEeccCCeEEEEEcCC
Q 016185 373 DGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 373 ~~~~l~s~~~dg~i~iwd~~~ 393 (394)
...|+++|+.=|.|.||+=.+
T Consensus 405 rsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 405 RSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred ccceEEecCccceEEEEecch
Confidence 889999999999999998543
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.7e-15 Score=133.49 Aligned_cols=232 Identities=15% Similarity=0.067 Sum_probs=148.1
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC---CeEEEEECCCCeeEEEEEecCCceeEEEE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (394)
|.+||..... ...+. .+...+...+|+ |+|+ .|+..+.+ ..|++||+.+++... +....+....++|
T Consensus 186 i~i~d~dg~~-~~~lt-----~~~~~v~~p~wS--PDG~-~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~w 255 (429)
T PRK01742 186 VRVADYDGFN-QFIVN-----RSSQPLMSPAWS--PDGS-KLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAF 255 (429)
T ss_pred EEEECCCCCC-ceEec-----cCCCccccceEc--CCCC-EEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeE
Confidence 9999975544 34444 356678888888 9999 77766543 479999998775422 2222233457899
Q ss_pred cCCCCcEEEE-ceeeeEEeeccceeeeeeeccceeeeccCCcEEEE--EecCCcEEEEeeccCCCcccEEEEEecCCCCe
Q 016185 137 QPLKPSLVVS-ASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLW--NVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 213 (394)
Q Consensus 137 ~~~~~~~l~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 213 (394)
+| +++.|+. .+. +|.+.|| |+.+++. ..+. .+...+....|+| +++
T Consensus 256 SP-DG~~La~~~~~-------------------------~g~~~Iy~~d~~~~~~-~~lt---~~~~~~~~~~wSp-DG~ 304 (429)
T PRK01742 256 SP-DGSRLAFASSK-------------------------DGVLNIYVMGANGGTP-SQLT---SGAGNNTEPSWSP-DGQ 304 (429)
T ss_pred CC-CCCEEEEEEec-------------------------CCcEEEEEEECCCCCe-Eeec---cCCCCcCCEEECC-CCC
Confidence 99 5555554 456 7766655 5555554 3344 4666788999999 887
Q ss_pred eEEee-ccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEe
Q 016185 214 RIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW 290 (394)
Q Consensus 214 ~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~ 290 (394)
.|+.. ..+|...+|++..... ....+ .+.. ....|+ |++++..+.++ +.+|
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~~----------------------~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~ 358 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASGG----------------------GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQ 358 (429)
T ss_pred EEEEEECCCCCceEEEEECCCC----------------------CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEE
Confidence 66544 4678889998765211 01111 1221 233444 77888777665 5569
Q ss_pred cCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEe
Q 016185 291 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM 370 (394)
Q Consensus 291 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 370 (394)
|+.+++.. .+. ... ......|+|++ .+++.++.++.+.+|++.........++. .|.+.+...+|
T Consensus 359 Dl~~g~~~-------~lt--~~~--~~~~~~~sPdG--~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--~~~g~~~~p~w 423 (429)
T PRK01742 359 DLTSGSTE-------VLS--STF--LDESPSISPNG--IMIIYSSTQGLGKVLQLVSADGRFKARLP--GSDGQVKFPAW 423 (429)
T ss_pred ECCCCCeE-------Eec--CCC--CCCCceECCCC--CEEEEEEcCCCceEEEEEECCCCceEEcc--CCCCCCCCccc
Confidence 99876421 111 111 12456799999 68888888998988887543334566776 67788899999
Q ss_pred ccC
Q 016185 371 SYD 373 (394)
Q Consensus 371 s~~ 373 (394)
+|-
T Consensus 424 sp~ 426 (429)
T PRK01742 424 SPY 426 (429)
T ss_pred CCC
Confidence 984
No 218
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.71 E-value=3e-15 Score=119.41 Aligned_cols=306 Identities=17% Similarity=0.220 Sum_probs=187.2
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc-----eeEEeeecccC-------CcccceEEEEEEEcCCCCc
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-----VIAALQSYVDE-------DKEESFYTVSWACNVDGIP 99 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~-----~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~ 99 (394)
.+-|.+|.|.. +|++||+|..+| |.+|.-.... ....++.|.++ .-++.|..+.|....+..
T Consensus 25 adiis~vef~~----~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a- 99 (433)
T KOG1354|consen 25 ADIISAVEFDH----YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA- 99 (433)
T ss_pred hcceeeEEeec----ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-
Confidence 45689999997 899999999998 8888744322 22333333221 235678889998544445
Q ss_pred EEEEeecCCeEEEEECCCCee-----------------------------------EEEE-EecCCceeEEEEcCCCCcE
Q 016185 100 FLVAGGINGIIRVIDVSNEKL-----------------------------------HKSF-VGHGDSINEIRTQPLKPSL 143 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~~~ 143 (394)
.++....|.+|++|.+..... .+.+ .+|.--|+++.++. +...
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et 178 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKET 178 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccce
Confidence 666777899999998754311 1111 14666677788877 6666
Q ss_pred EEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCC-----cccEEEEEecCCCCeeEEee
Q 016185 144 VVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGH-----RNEVLSVDFHPSDIYRIASC 218 (394)
Q Consensus 144 l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~s~ 218 (394)
++++. |=.|.+|+++--.....+...+.+ ..-|++..|+|...++|+-.
T Consensus 179 ~lSAD--------------------------dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 179 FLSAD--------------------------DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred Eeecc--------------------------ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence 77766 778888887643322222211122 35689999999888899999
Q ss_pred ccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCC
Q 016185 219 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 296 (394)
Q Consensus 219 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~ 296 (394)
+..|+|++.|++....=...+..+..... .....-+..--..|..+.|+ |+++++-. --+|++||+....
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEeped-------p~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~ 304 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPED-------PSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEA 304 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccC-------CcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccC
Confidence 99999999999962210000000000000 01111222233567788887 78888733 3689999996554
Q ss_pred CCCCCCcceecccccCCCC---------------CeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceee--------
Q 016185 297 QSPGEGTADILQKYPVPEC---------------DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-------- 353 (394)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~---------------~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------- 353 (394)
. ++..++.|.. .-..++|+-++ .++++|+..+.+++|++..+..+..
T Consensus 305 ~--------pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~--~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~ 374 (433)
T KOG1354|consen 305 K--------PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND--SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKN 374 (433)
T ss_pred C--------cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc--ceEecccccceEEEecCCCCcceeecccccccC
Confidence 3 2333333321 22345677666 6999999999999999654421110
Q ss_pred ------EEec---cCC-------------ccCCeeEEEeccCCCEEEEeccCCeEEEE
Q 016185 354 ------ARLS---HAQ-------------SKSPIRQTAMSYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 354 ------~~~~---~~~-------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 389 (394)
..+. ..+ ....+...+|+|..+.+|.+..+ .++||
T Consensus 375 ~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 375 MKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred CcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 0000 001 11234567899999999988655 56665
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=1.2e-14 Score=133.88 Aligned_cols=264 Identities=11% Similarity=0.177 Sum_probs=170.1
Q ss_pred CCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC-------eeEEEEEecCCceeEEEEcCC
Q 016185 67 EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPL 139 (394)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~ 139 (394)
+|..+..+. .|...+..++.+ ++++. ++++|+.||+|++||...- +...++..-...+.++...+
T Consensus 1037 ~G~lVAhL~-----Ehs~~v~k~a~s-~~~~s-~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~- 1108 (1431)
T KOG1240|consen 1037 RGILVAHLH-----EHSSAVIKLAVS-SEHTS-LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG- 1108 (1431)
T ss_pred cceEeehhh-----hccccccceeec-CCCCc-eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-
Confidence 455555555 567777777665 23446 9999999999999998642 22233333456788888887
Q ss_pred CCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE-----EEE-eeccCCCcccEEEEEecCCCCe
Q 016185 140 KPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC-----ILI-FAGAGGHRNEVLSVDFHPSDIY 213 (394)
Q Consensus 140 ~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-----~~~-~~~~~~~~~~i~~~~~~~~~~~ 213 (394)
.++.+|.++. ||.|++.+++..+. .+. .........-+..-++......
T Consensus 1109 ~~~~~Av~t~-------------------------DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1109 NGDQFAVSTK-------------------------DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred CCCeEEEEcC-------------------------CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc
Confidence 6778888888 99999999875211 111 1111112223334444432344
Q ss_pred -eEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEe
Q 016185 214 -RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW 290 (394)
Q Consensus 214 -~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~ 290 (394)
.++.+...+.|..||.++.... -........+.|++++.+ +.+++.|...|.+.+|
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~~~~---------------------w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMRHDA---------------------WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred eeEEEEEeccceEEecchhhhhH---------------------HhhhcCccccceeEEEecCCceEEEEecCCceEEEE
Confidence 7888889999999999983210 111223345678888888 7899999999999999
Q ss_pred cCCCCCCCCCCCcceecccc-cCCCCCeEEEEEeecCC--cceEEEEe-CCCcEEEEEecCCCceeeEEec---------
Q 016185 291 EPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFH--YNAAAIGN-REGKIFVWELQSSPPVLIARLS--------- 357 (394)
Q Consensus 291 d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~--~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~--------- 357 (394)
|++-+. ++.+. ..+..++..+..+|-.+ ...+.+++ ..+.|.+|++.++....+....
T Consensus 1223 DLRF~~---------~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~ 1293 (1431)
T KOG1240|consen 1223 DLRFRV---------PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYA 1293 (1431)
T ss_pred EeecCc---------eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhh
Confidence 999665 23332 23447788888877653 22344444 5788999999987543322211
Q ss_pred --cC----CccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 358 --HA----QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 358 --~~----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
.. .+.-.....++...+..+.+|+.|..|+.||...
T Consensus 1294 ~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1294 LPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 00 1112222344444567899999999999999864
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=1.9e-15 Score=127.31 Aligned_cols=204 Identities=15% Similarity=0.165 Sum_probs=146.5
Q ss_pred CCcEEEEEecCCcEEEEeecc-CCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCC---
Q 016185 175 DESVRLWNVQTGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP--- 250 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--- 250 (394)
.|.|.+.|....+..+.+... .-.+..++++.|-|.+...|+.+-.+|.+.+||...............+.+..+.
T Consensus 194 tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t 273 (636)
T KOG2394|consen 194 TGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT 273 (636)
T ss_pred cCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee
Confidence 889999987653322222210 0134789999999977788889999999999988442211111111111111111
Q ss_pred --ccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecC
Q 016185 251 --TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 326 (394)
Q Consensus 251 --~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 326 (394)
......|+..+..-...|...+|+ |++|++.+.||.++|||..+.+ ++..++.--+...|++|+||+
T Consensus 274 ~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e---------Llg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 274 SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE---------LLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred eeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH---------HHHHHHhhccceEEEEEcCCc
Confidence 011124555666666788888887 8899999999999999999876 455555556679999999999
Q ss_pred CcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEecc----------------------------------
Q 016185 327 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY---------------------------------- 372 (394)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~---------------------------------- 372 (394)
+++++|++|--|.||.+... +.+.+-. +|.+.|+.++|.|
T Consensus 345 --KyIvtGGEDDLVtVwSf~er--RVVARGq--GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S 418 (636)
T KOG2394|consen 345 --KYIVTGGEDDLVTVWSFEER--RVVARGQ--GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS 418 (636)
T ss_pred --cEEEecCCcceEEEEEeccc--eEEEecc--ccccceeeEeecccccccccccccccccccccchhcccccccCCCCC
Confidence 79999999999999999887 4666655 9999999999983
Q ss_pred -CC-------------CEEEEeccCCeEEEEEcCC
Q 016185 373 -DG-------------STILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 373 -~~-------------~~l~s~~~dg~i~iwd~~~ 393 (394)
++ ..+.+.+.|..+.+||+..
T Consensus 419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred cCCCcccccccccceEEEeecccccceEEEEecch
Confidence 01 2577889999999999975
No 221
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=2.8e-15 Score=115.29 Aligned_cols=269 Identities=14% Similarity=0.125 Sum_probs=165.4
Q ss_pred ecCCCceeeeecccccccceeeeec-cCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcc
Q 016185 6 IGCEPLVGSLTPSKKREYRVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE 83 (394)
Q Consensus 6 ~g~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~ 83 (394)
.|.+.+...+. ........-.++ .|...|+.+.--| +..+.+-+.|. +.+|++..+..+..-.
T Consensus 30 sg~~~G~V~~w--~lqt~r~~~~~r~~g~~~it~lq~~p-----~d~l~tqgRd~~L~lw~ia~s~~i~i~S-------- 94 (323)
T KOG0322|consen 30 SGLSVGIVKMW--VLQTERDLPLIRLFGRLFITNLQSIP-----NDSLDTQGRDPLLILWTIAYSAFISIHS-------- 94 (323)
T ss_pred cccccceEEEE--EeecCccchhhhhhccceeeceeecC-----CcchhhcCCCceEEEEEccCcceEEEee--------
Confidence 34444443333 333333344455 5678899999888 46677778887 9999988765433211
Q ss_pred cceEEEEEE---EcCCCCc---EEEEeecCC-eEEEEECCCCeeEEEEE----ecCCceeEEEEcCCCC--cEEEEceee
Q 016185 84 ESFYTVSWA---CNVDGIP---FLVAGGING-IIRVIDVSNEKLHKSFV----GHGDSINEIRTQPLKP--SLVVSASKV 150 (394)
Q Consensus 84 ~~v~~~~~~---~~~~~~~---~l~s~~~dg-~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~--~~l~s~~~~ 150 (394)
-.++++.|+ ..+.++. .++.-++.. .+.+-|......++... +..+.+.+..+....+ -+++.|-.
T Consensus 95 i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyE- 173 (323)
T KOG0322|consen 95 IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYE- 173 (323)
T ss_pred eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEecc-
Confidence 222333333 3333321 122211111 12222221111111111 2344566666543222 24555666
Q ss_pred eEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeec-------cCCCcccEEEEEecCCCCeeEEeeccCCc
Q 016185 151 IIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAG-------AGGHRNEVLSVDFHPSDIYRIASCGMDNT 223 (394)
Q Consensus 151 i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~ 223 (394)
+|.+.+||+.++..+..++. ...|..+|.++.+.+ ..+.=++|+.+..
T Consensus 174 ------------------------sghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dk 228 (323)
T KOG0322|consen 174 ------------------------SGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDK 228 (323)
T ss_pred ------------------------CCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccc
Confidence 99999999998743332221 126899999999998 5556688888899
Q ss_pred EEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceE--EEEEeCcEEEEeecCCeEEEecCCCCCCCCCC
Q 016185 224 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD--CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGE 301 (394)
Q Consensus 224 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 301 (394)
+..|++......+ +.+.. .....-.|. .|..+++.+++++.|++||+|..++..
T Consensus 229 l~~~Sl~~s~gsl------------------q~~~e-~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~----- 284 (323)
T KOG0322|consen 229 LVMYSLNHSTGSL------------------QIRKE-ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN----- 284 (323)
T ss_pred ceeeeeccccCcc------------------cccce-EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-----
Confidence 9999987721100 01111 111112233 344458999999999999999999887
Q ss_pred CcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 302 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 302 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
++..+..|...|++++|+|+. .++|+++.|++|.+|++
T Consensus 285 ----pLAVLkyHsagvn~vAfspd~--~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 ----PLAVLKYHSAGVNAVAFSPDC--ELMAAASKDARISLWKL 322 (323)
T ss_pred ----chhhhhhhhcceeEEEeCCCC--chhhhccCCceEEeeec
Confidence 688888999999999999997 69999999999999986
No 222
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.67 E-value=4.3e-14 Score=110.49 Aligned_cols=268 Identities=14% Similarity=0.116 Sum_probs=182.7
Q ss_pred EEEEEcCCCceeE--EeeecccCCcccceEEEEEEEcCCCCc-EEEEeecCCeEEEEECCCCeeEEEEEecC------Cc
Q 016185 60 VTVYQCLEGGVIA--ALQSYVDEDKEESFYTVSWACNVDGIP-FLVAGGINGIIRVIDVSNEKLHKSFVGHG------DS 130 (394)
Q Consensus 60 i~vw~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~ 130 (394)
+.+|++...+... +++. .....++.+.|+.-+.+.. .++-+..+|.|.++..........+++-. ..
T Consensus 48 l~Lys~~d~~~~~l~~~q~----~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 48 LHLYSLEDMKLSPLDTLQC----TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eEEEeecccccCccceeee----ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 7888887665443 2332 2345667788876654442 56777889999999876554444444321 12
Q ss_pred eeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEE--EeeccCCCcccEEEEEec
Q 016185 131 INEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICIL--IFAGAGGHRNEVLSVDFH 208 (394)
Q Consensus 131 v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~i~~~~~~ 208 (394)
..++.|++ .+..++++.. +|.+.+-+........ .++ +|.-++....|+
T Consensus 124 ~lslD~~~-~~~~i~vs~s-------------------------~G~~~~v~~t~~~le~vq~wk---~He~E~Wta~f~ 174 (339)
T KOG0280|consen 124 ALSLDIST-SGTKIFVSDS-------------------------RGSISGVYETEMVLEKVQTWK---VHEFEAWTAKFS 174 (339)
T ss_pred eeEEEeec-cCceEEEEcC-------------------------CCcEEEEecceeeeeeccccc---ccceeeeeeecc
Confidence 34677887 5556666666 8988866554443333 555 899999999999
Q ss_pred CCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCC
Q 016185 209 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDN 285 (394)
Q Consensus 209 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg 285 (394)
..+.+++++|+.|+.+..||+|.++. ..-...+.|...|.+|.-+ +.++++|+.|.
T Consensus 175 ~~~pnlvytGgDD~~l~~~D~R~p~~---------------------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe 233 (339)
T KOG0280|consen 175 DKEPNLVYTGGDDGSLSCWDIRIPKT---------------------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE 233 (339)
T ss_pred cCCCceEEecCCCceEEEEEecCCcc---------------------eeeecceeeecceEEEecCCCCCceEEEecccc
Confidence 87889999999999999999995321 1122356788889999887 55999999999
Q ss_pred eEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEec-cCCccCC
Q 016185 286 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSP 364 (394)
Q Consensus 286 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~ 364 (394)
.|++||.++..+ ++..-. ..+.|+.+..+|..+..+|+++- -+-.+|-+...+.......++ ...|.+-
T Consensus 234 ~i~~~DtRnm~k--------Pl~~~~-v~GGVWRi~~~p~~~~~lL~~CM-h~G~ki~~~~~~~~e~~~~~~s~~~hdSl 303 (339)
T KOG0280|consen 234 CIRVLDTRNMGK--------PLFKAK-VGGGVWRIKHHPEIFHRLLAACM-HNGAKILDSSDKVLEFQIVLPSDKIHDSL 303 (339)
T ss_pred ceeeeehhcccC--------ccccCc-cccceEEEEecchhhhHHHHHHH-hcCceEEEecccccchheeeeccccccce
Confidence 999999997653 232222 23789999999987644444444 444788888776433222222 4477777
Q ss_pred eeEEEeccCCCEEEEec-cCCeEE-EEEc
Q 016185 365 IRQTAMSYDGSTILSCC-EDGAIW-RWDA 391 (394)
Q Consensus 365 v~~~~~s~~~~~l~s~~-~dg~i~-iwd~ 391 (394)
+..-.|......||+|+ .|..++ +|-.
T Consensus 304 ~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 304 CYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred eeccccccccceeeeeeccccceeeeeee
Confidence 88888866667899876 677755 7754
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=5.4e-15 Score=124.61 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=125.2
Q ss_pred EEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC------------
Q 016185 51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE------------ 118 (394)
Q Consensus 51 ~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~------------ 118 (394)
+|+--+.+.|.+.|....+..+.+. ......+..++++.|. |.+...++.+-.+|.+.+||..-.
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfn-e~r~i~ktsvT~ikWv--pg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFN-EERLINKSSVTCIKWV--PGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhh-hcccccccceEEEEEE--eCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 3333333447777765532221111 1111335789999999 545446788888999999975210
Q ss_pred --e--------------eEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEE
Q 016185 119 --K--------------LHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWN 182 (394)
Q Consensus 119 --~--------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd 182 (394)
. ++..+.--++.|...+|+| ++.+||+.+. ||.++|+|
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSq-------------------------DGfLRvF~ 318 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQ-------------------------DGFLRIFD 318 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEec-------------------------CceEEEee
Confidence 0 1111222345788899999 8899999999 99999999
Q ss_pred ecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeee
Q 016185 183 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 262 (394)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (394)
..+.+.+..++ ..-+...|++|+| |+++|++|+.|.-|.+|.+.. .+.+..-+
T Consensus 319 fdt~eLlg~mk---SYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~e-----------------------rRVVARGq 371 (636)
T KOG2394|consen 319 FDTQELLGVMK---SYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEE-----------------------RRVVARGQ 371 (636)
T ss_pred ccHHHHHHHHH---hhccceEEEEEcC-CccEEEecCCcceEEEEEecc-----------------------ceEEEecc
Confidence 99988887776 4667899999999 999999999999999999998 44577889
Q ss_pred cCCCceEEEEEeC
Q 016185 263 VHSNYVDCNRWLG 275 (394)
Q Consensus 263 ~~~~~i~~~~~~~ 275 (394)
+|..+|..|+|++
T Consensus 372 GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 372 GHKSWVSVVAFDP 384 (636)
T ss_pred ccccceeeEeecc
Confidence 9999999999985
No 224
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=3.5e-15 Score=130.46 Aligned_cols=304 Identities=13% Similarity=0.135 Sum_probs=213.1
Q ss_pred cccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCc-eeEEeeecccCCcccceEEEEEEEcCCC
Q 016185 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDG 97 (394)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (394)
..+.|...-.++. .+++.++..+| .|+-+|.++.-++.+-|+...- +..-+. +. ..-.+-.+.|++.|.-
T Consensus 11 ns~tf~kslsl~v-~~~~~a~si~p----~grdi~lAsr~gl~i~dld~p~~ppr~l~-h~---tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 11 NSPTFGKSLSLKV-DGGFNAVSINP----SGRDIVLASRQGLYIIDLDDPFTPPRWLH-HI---TPWQVADVQWSPHPAK 81 (1081)
T ss_pred CCCccCceeEEEe-cCcccceeecc----ccchhhhhhhcCeEEEeccCCCCCceeee-cc---CcchhcceecccCCCC
Confidence 3344443333432 56789999999 7888999999998888877543 333333 21 1224556889987777
Q ss_pred CcEEEEeecCCeEEEEECCC---CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeecc
Q 016185 98 IPFLVAGGINGIIRVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQ 174 (394)
Q Consensus 98 ~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
.+.+++.+ ...-.+|++.. ......+.+|...|+.+.|+|+....+++++-
T Consensus 82 ~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsv------------------------- 135 (1081)
T KOG0309|consen 82 PYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSV------------------------- 135 (1081)
T ss_pred ceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccc-------------------------
Confidence 74555544 45566899863 34455667899999999999999999999999
Q ss_pred CCcEEEEEecCCc-EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccc
Q 016185 175 DESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 253 (394)
Q Consensus 175 d~~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (394)
|..+..||+++.. .+..+. .-...-..++|+..+++.++ .+....|++||++.+
T Consensus 136 dt~vh~wd~rSp~~p~ys~~---~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~g--------------------- 190 (1081)
T KOG0309|consen 136 DTYVHAWDMRSPHRPFYSTS---SWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKG--------------------- 190 (1081)
T ss_pred cccceeeeccCCCcceeeee---cccccCceeeecccCcchhh-hccCCceEEEeccCC---------------------
Confidence 9999999998754 455544 33455678999985666554 456678999999985
Q ss_pred cccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcce
Q 016185 254 VQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 330 (394)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 330 (394)
..|+..+++|...|..++|. -..+.+.+.|++|+.||...... .-........+|+.-++.|-+.+.+
T Consensus 191 -s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--------e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 191 -STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--------ESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred -CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--------ccceeccccCcceeccccccCceeE
Confidence 34788888899999999987 56888999999999999986642 1122233345677778888776433
Q ss_pred EEEEeCCCcEEEEEecCC--------CceeeEEeccCCccCCeeEEEeccCC----------CEEEEeccCCeEEEEEcC
Q 016185 331 AAIGNREGKIFVWELQSS--------PPVLIARLSHAQSKSPIRQTAMSYDG----------STILSCCEDGAIWRWDAI 392 (394)
Q Consensus 331 l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~i~iwd~~ 392 (394)
+.---.+..+.+++.+.. .+..+.++. ||...|....|-..+ -.|++-+.|..+++|-+.
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeec--CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 333223334444444321 135677777 999999887775422 269999999999999886
Q ss_pred C
Q 016185 393 P 393 (394)
Q Consensus 393 ~ 393 (394)
+
T Consensus 340 ~ 340 (1081)
T KOG0309|consen 340 S 340 (1081)
T ss_pred H
Confidence 4
No 225
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.5e-14 Score=128.74 Aligned_cols=218 Identities=13% Similarity=0.108 Sum_probs=140.0
Q ss_pred eeeccCccceeEEEEEeeCCCcceEEEEecCC---c-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEE
Q 016185 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN---R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (394)
Q Consensus 27 ~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d---~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (394)
+.+..|...+.+.+||| +|+.||..+.+ . |++||+.+++... +..+. .+ ....+|+ |||+ .|+
T Consensus 197 ~~lt~~~~~v~~p~wSP----DG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~--g~---~~~~~wS--PDG~-~La 263 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSP----DGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFR--GH---NGAPAFS--PDGS-RLA 263 (429)
T ss_pred eEeccCCCccccceEcC----CCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCC--Cc---cCceeEC--CCCC-EEE
Confidence 44667888999999999 78888876542 2 9999998775422 22111 12 2246666 9999 666
Q ss_pred Ee-ecCCeEEEE--ECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 103 AG-GINGIIRVI--DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 103 s~-~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
.+ +.+|.+.|| |+.+++ ...+..+...+....|+|++..++++... ++...
T Consensus 264 ~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~-------------------------~g~~~ 317 (429)
T PRK01742 264 FASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDR-------------------------SGSPQ 317 (429)
T ss_pred EEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECC-------------------------CCCce
Confidence 54 568876555 655554 45566677778899999944334445555 78888
Q ss_pred EEEecCCc-EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccce
Q 016185 180 LWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 258 (394)
Q Consensus 180 vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
||+++... ....+. +.. ....|+| +++.|+..+.++ +.+||+.+++..
T Consensus 318 I~~~~~~~~~~~~l~----~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~----------------------- 366 (429)
T PRK01742 318 VYRMSASGGGASLVG----GRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTE----------------------- 366 (429)
T ss_pred EEEEECCCCCeEEec----CCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeE-----------------------
Confidence 99876432 222222 333 4578999 888888877765 556998874321
Q ss_pred eeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCC--CCCCCCCCcceecccccCCCCCeEEEEEeec
Q 016185 259 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM--KEQSPGEGTADILQKYPVPECDIWFIKFSCD 325 (394)
Q Consensus 259 ~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (394)
.....+ ....+.|+ |++++.++.++...+|++.. +. ...++..+...+...+|+|-
T Consensus 367 ~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~---------~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 367 VLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR---------FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC---------ceEEccCCCCCCCCcccCCC
Confidence 000011 11234454 88999999999888877642 22 45566667777778888874
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.4e-13 Score=107.02 Aligned_cols=290 Identities=12% Similarity=0.110 Sum_probs=171.0
Q ss_pred eecCCCceeeeecccccccceeeeec-cCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEE---------e
Q 016185 5 AIGCEPLVGSLTPSKKREYRVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAA---------L 74 (394)
Q Consensus 5 a~g~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~---------~ 74 (394)
|++..+.+++++.... +....|+ ..+..|+|++|-|. .+.-|+.|+..+|.+|.......... .
T Consensus 114 ava~nddvVriy~kss---t~pt~Lks~sQrnvtclawRPl---saselavgCr~gIciW~~s~tln~~r~~~~~s~~~~ 187 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSS---TCPTKLKSVSQRNVTCLAWRPL---SASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHL 187 (445)
T ss_pred hhhccCcEEEEeccCC---CCCceecchhhcceeEEEeccC---CcceeeeeecceeEEEEcCcccccccccccccccch
Confidence 4566666767665444 2222333 34678999999994 46789999999999998753221111 1
Q ss_pred eecccCCcccceEEEEEEEcCCCCcEEEEeec-CCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEE
Q 016185 75 QSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIII 153 (394)
Q Consensus 75 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~ 153 (394)
+....++| .+|+++.|. +||. .+++++. |..|.|||+.++..+.......+.++-+.|+| ++..|..+.-
T Consensus 188 qvl~~pgh-~pVtsmqwn--~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~---- 258 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWN--EDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATC---- 258 (445)
T ss_pred hheeCCCC-ceeeEEEEc--CCCC-EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecc----
Confidence 11222344 789999999 8998 7887765 67899999999877666544556789999999 7777777777
Q ss_pred eeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccc
Q 016185 154 SSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 233 (394)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 233 (394)
|+..++|+....-...... ...+.|...+|+| .|..|+... .|.-++|.+.-..
T Consensus 259 ---------------------davfrlw~e~q~wt~erw~---lgsgrvqtacWsp-cGsfLLf~~-sgsp~lysl~f~~ 312 (445)
T KOG2139|consen 259 ---------------------DAVFRLWQENQSWTKERWI---LGSGRVQTACWSP-CGSFLLFAC-SGSPRLYSLTFDG 312 (445)
T ss_pred ---------------------cceeeeehhcccceeccee---ccCCceeeeeecC-CCCEEEEEE-cCCceEEEEeecC
Confidence 9999999654332222222 2455999999999 766554433 2445566654422
Q ss_pred eeeccccccCCCCCCCCccccccceeeee----cCCCceEEEEEe--CcEEEEeecCC--------eEEEecCCCCCCCC
Q 016185 234 TYVEKSFTWTDLPSKFPTKYVQFPVFIAS----VHSNYVDCNRWL--GDFILSKSVDN--------EIVLWEPKMKEQSP 299 (394)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~--~~~l~~~~~dg--------~i~~~d~~~~~~~~ 299 (394)
+.....- -........ ....+...+. .-.+.+.+++|+ |.++++.-..+ .|.+||.+..-.
T Consensus 313 ~~~~~~~-~~~~k~~ll--iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~-- 387 (445)
T KOG2139|consen 313 EDSVFLR-PQSIKRVLL--IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP-- 387 (445)
T ss_pred CCccccC-cccceeeee--eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc--
Confidence 1111000 000000000 0000000111 124567889998 88998876543 366677664421
Q ss_pred CCCcceec--ccccCCCCCeEEEEEeecCC-cceEEEEeCCCcEEEEEec
Q 016185 300 GEGTADIL--QKYPVPECDIWFIKFSCDFH-YNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 300 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 346 (394)
.+.. ....+. .-..+.|+|..+ ..+|..+=..|.+.-|++.
T Consensus 388 ----vels~cg~i~ge--~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 388 ----VELSYCGMIGGE--YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ----eEEEecccccCC--CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 0011 111111 134566666432 3566677777888777764
No 227
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=8.2e-15 Score=120.02 Aligned_cols=195 Identities=19% Similarity=0.164 Sum_probs=146.6
Q ss_pred eEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEEC
Q 016185 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (394)
Q Consensus 37 ~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~ 115 (394)
.+++|++ +|..+++++.|+ +|||+......+.... .|..+|.++.|+ |||+ +|++-+.| ..+||+.
T Consensus 148 k~vaf~~----~gs~latgg~dg~lRv~~~Ps~~t~l~e~-----~~~~eV~DL~FS--~dgk-~lasig~d-~~~VW~~ 214 (398)
T KOG0771|consen 148 KVVAFNG----DGSKLATGGTDGTLRVWEWPSMLTILEEI-----AHHAEVKDLDFS--PDGK-FLASIGAD-SARVWSV 214 (398)
T ss_pred eEEEEcC----CCCEeeeccccceEEEEecCcchhhhhhH-----hhcCccccceeC--CCCc-EEEEecCC-ceEEEEe
Confidence 6799998 789999999999 9999977776655555 688899999988 9999 99999999 8999999
Q ss_pred CCCeeEEEEEe--cCCceeEEEEcCCCC-----cEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE
Q 016185 116 SNEKLHKSFVG--HGDSINEIRTQPLKP-----SLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC 188 (394)
Q Consensus 116 ~~~~~~~~~~~--~~~~v~~~~~~~~~~-----~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 188 (394)
+++..+..... -......+.|+. ++ .+++.... -+.|+.||+.....
T Consensus 215 ~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~-------------------------~~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 215 NTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFP-------------------------GGGVRLCDISLWSG 268 (398)
T ss_pred ccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCC-------------------------CCceeEEEeeeecc
Confidence 99976665542 233566778877 33 23333333 56677766543221
Q ss_pred ---EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 189 ---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 189 ---~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
++..+ .-.....|++++.++ +|++++.|+.||.|-+++..+.+. .....+.|.
T Consensus 269 ~~~l~~~~-~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~----------------------~~~vk~aH~ 324 (398)
T KOG0771|consen 269 SNFLRLRK-KIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQR----------------------LQYVKEAHL 324 (398)
T ss_pred ccccchhh-hhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeee----------------------eEeehhhhe
Confidence 11111 002346899999999 999999999999999999988432 233556899
Q ss_pred CceEEEEEe--CcEEEEeecCCeEEEecCCC
Q 016185 266 NYVDCNRWL--GDFILSKSVDNEIVLWEPKM 294 (394)
Q Consensus 266 ~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~ 294 (394)
..|+.+.|+ .+++++.+.|....+..+..
T Consensus 325 ~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 325 GFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999998 56888888888888887765
No 228
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=3e-12 Score=101.98 Aligned_cols=317 Identities=11% Similarity=0.138 Sum_probs=191.8
Q ss_pred cceeEEEEEeeCCCcceEEEE-ecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 34 RPLYAVVFNFIDSRYFNVFAT-VGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las-~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
+.|.-+.|.. +..++.. ...+. |.+|++...+--..++ ....++..++|+ |+|+.+|.+...+-.|.
T Consensus 49 dki~yieW~a----ds~~ilC~~yk~~~vqvwsl~Qpew~ckId-----eg~agls~~~WS--PdgrhiL~tseF~lriT 117 (447)
T KOG4497|consen 49 DKIVYIEWKA----DSCHILCVAYKDPKVQVWSLVQPEWYCKID-----EGQAGLSSISWS--PDGRHILLTSEFDLRIT 117 (447)
T ss_pred HHhhheeeec----cceeeeeeeeccceEEEEEeecceeEEEec-----cCCCcceeeeEC--CCcceEeeeecceeEEE
Confidence 5677888986 4444444 45565 9999998887766776 456788889999 99987888889999999
Q ss_pred EEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceee-----e-----EEeeccceeeeeeeccceeeec-cCCcEEE
Q 016185 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKV-----I-----IISSLSLICLLLFIRSNCLRVG-QDESVRL 180 (394)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~-----i-----~~~~~~~~~~~~~~~~~~~~~~-~d~~i~v 180 (394)
||.+.+.+.. -++..+..+..++|+| ++++.+.+++. + +-|.+-.-..+..-+-.=+-=+ .+..+.|
T Consensus 118 VWSL~t~~~~-~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV 195 (447)
T KOG4497|consen 118 VWSLNTQKGY-LLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV 195 (447)
T ss_pred EEEeccceeE-EecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE
Confidence 9999876543 2333344568899999 88888887760 0 1111100000000000000001 2445778
Q ss_pred EEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecc----------------------
Q 016185 181 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK---------------------- 238 (394)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---------------------- 238 (394)
||---.-.+..+. ..-.+..+.|+| .+++|+.|+.|+.+|+.+--+-+...+.
T Consensus 196 wd~~Leykv~aYe----~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ 270 (447)
T KOG4497|consen 196 WDNVLEYKVYAYE----RGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV 270 (447)
T ss_pred ecchhhheeeeee----eccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence 8854333333332 346788999999 9999999999999998665432111100
Q ss_pred -----ccccCCCCCC----------CCcccc------ccceeeeecCCCceEEEEEe--CcEEEEeec--CCeEEEecCC
Q 016185 239 -----SFTWTDLPSK----------FPTKYV------QFPVFIASVHSNYVDCNRWL--GDFILSKSV--DNEIVLWEPK 293 (394)
Q Consensus 239 -----~~~~~~~~~~----------~~~~~~------~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~--dg~i~~~d~~ 293 (394)
...+.+.... ...... .+|........-.+.-++|+ ..++++-.. -..+-+||++
T Consensus 271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq 350 (447)
T KOG4497|consen 271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ 350 (447)
T ss_pred hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech
Confidence 0000000000 000000 01111111223346678888 334444322 3468999999
Q ss_pred CCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccC
Q 016185 294 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 373 (394)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 373 (394)
..+ +...-....+|.+..|.|... .|+.......+++|..... ..+ ..+ +..-.|..+.|..+
T Consensus 351 ~l~----------l~avLiQk~piraf~WdP~~p--rL~vctg~srLY~W~psg~--~~V-~vP--~~GF~i~~l~W~~~ 413 (447)
T KOG4497|consen 351 NLK----------LHAVLIQKHPIRAFEWDPGRP--RLVVCTGKSRLYFWAPSGP--RVV-GVP--KKGFNIQKLQWLQP 413 (447)
T ss_pred hhh----------hhhhhhhccceeEEEeCCCCc--eEEEEcCCceEEEEcCCCc--eEE-ecC--CCCceeeeEEecCC
Confidence 775 333334456899999999984 5666555667999987653 222 233 33367999999999
Q ss_pred CCEEEEeccCCe
Q 016185 374 GSTILSCCEDGA 385 (394)
Q Consensus 374 ~~~l~s~~~dg~ 385 (394)
|..++..+.|..
T Consensus 414 g~~i~l~~kDaf 425 (447)
T KOG4497|consen 414 GEFIVLCGKDAF 425 (447)
T ss_pred CcEEEEEcCCce
Confidence 999999998854
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=6.9e-13 Score=117.85 Aligned_cols=230 Identities=11% Similarity=0.079 Sum_probs=141.3
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee---cCCeEEEEECCCCeeEEEEEecCCceeEEEE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG---INGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (394)
|.++|...... +.+. .+...+...+|+ |||+ .|+..+ .+..|.+|++.+++... +....+.+....|
T Consensus 181 l~~~d~dg~~~-~~lt-----~~~~~~~~p~wS--PDG~-~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~ 250 (429)
T PRK03629 181 LRVSDYDGYNQ-FVVH-----RSPQPLMSPAWS--PDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAF 250 (429)
T ss_pred EEEEcCCCCCC-EEee-----cCCCceeeeEEc--CCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEE
Confidence 88888765443 3333 244567778888 9999 666443 24579999998775432 2223334567899
Q ss_pred cCCCCcEEE-EceeeeEEeeccceeeeeeeccceeeeccCC--cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCe
Q 016185 137 QPLKPSLVV-SASKVIIISSLSLICLLLFIRSNCLRVGQDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 213 (394)
Q Consensus 137 ~~~~~~~l~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 213 (394)
+| ++..|+ +.+. +| .|.+||+.+++..+... +...+....|+| +++
T Consensus 251 SP-DG~~La~~~~~-------------------------~g~~~I~~~d~~tg~~~~lt~----~~~~~~~~~wSP-DG~ 299 (429)
T PRK03629 251 SP-DGSKLAFALSK-------------------------TGSLNLYVMDLASGQIRQVTD----GRSNNTEPTWFP-DSQ 299 (429)
T ss_pred CC-CCCEEEEEEcC-------------------------CCCcEEEEEECCCCCEEEccC----CCCCcCceEECC-CCC
Confidence 99 555444 4444 44 58899998877655433 445678899999 888
Q ss_pred eEEeecc-CCcEEEE--EccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecC---C
Q 016185 214 RIASCGM-DNTVKIW--SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---N 285 (394)
Q Consensus 214 ~l~s~~~-dg~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---g 285 (394)
.|+..+. ++...+| |+.++. ...+..+........|+ |++++..+.+ .
T Consensus 300 ~I~f~s~~~g~~~Iy~~d~~~g~------------------------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 300 NLAYTSDQAGRPQVYKVNINGGA------------------------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred EEEEEeCCCCCceEEEEECCCCC------------------------eEEeecCCCCccCEEECCCCCEEEEEEccCCCc
Confidence 7766654 4555555 544421 11222222333445565 7777665543 3
Q ss_pred eEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCc---EEEEEecCCCceeeEEeccCCcc
Q 016185 286 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK---IFVWELQSSPPVLIARLSHAQSK 362 (394)
Q Consensus 286 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~ 362 (394)
.|.+||+.+++.. .+.. . .......|+||+ .+++.++.++. +.++++... ....+. +|.
T Consensus 356 ~I~~~dl~~g~~~-------~Lt~---~-~~~~~p~~SpDG--~~i~~~s~~~~~~~l~~~~~~G~---~~~~l~--~~~ 417 (429)
T PRK03629 356 HIAKQDLATGGVQ-------VLTD---T-FLDETPSIAPNG--TMVIYSSSQGMGSVLNLVSTDGR---FKARLP--ATD 417 (429)
T ss_pred eEEEEECCCCCeE-------EeCC---C-CCCCCceECCCC--CEEEEEEcCCCceEEEEEECCCC---CeEECc--cCC
Confidence 5888998876421 1211 1 112356799999 57777776654 566676443 345555 666
Q ss_pred CCeeEEEecc
Q 016185 363 SPIRQTAMSY 372 (394)
Q Consensus 363 ~~v~~~~~s~ 372 (394)
+.+...+|+|
T Consensus 418 ~~~~~p~Wsp 427 (429)
T PRK03629 418 GQVKFPAWSP 427 (429)
T ss_pred CCcCCcccCC
Confidence 7888899987
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.5e-13 Score=114.82 Aligned_cols=247 Identities=13% Similarity=0.177 Sum_probs=171.4
Q ss_pred cCccceeEEEEEeeCCCcceEEEEecCCc--EEEEEcCCCceeEEeeecccC----------------------------
Q 016185 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDE---------------------------- 80 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~~~~~~las~~~d~--i~vw~~~~~~~~~~~~~~~~~---------------------------- 80 (394)
+|...-+.|..+| ||+++.+.|.=. |++||+..-... +..+...
T Consensus 49 e~p~ast~ik~s~----DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 49 EMPTASTRIKVSP----DGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred CCccccceeEecC----CCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 5778889999999 788776666544 999998654321 1111100
Q ss_pred ----Ccccce--EEEEEEEc-CCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEE
Q 016185 81 ----DKEESF--YTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIII 153 (394)
Q Consensus 81 ----~~~~~v--~~~~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~ 153 (394)
.+...| .+-.+.++ |... |+.++....|+-++++.|+.+..+....+.++++..++ -..+|++|+.
T Consensus 123 k~G~hy~~RIP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~---- 195 (703)
T KOG2321|consen 123 KYGRHYRTRIPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTE---- 195 (703)
T ss_pred hcCeeeeeecCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEeccc----
Confidence 000000 11111111 2333 45555556788899999999999998889999999999 7789999999
Q ss_pred eeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccC---CCc-----ccEEEEEecCCCCeeEEeeccCCcEE
Q 016185 154 SSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAG---GHR-----NEVLSVDFHPSDIYRIASCGMDNTVK 225 (394)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~-----~~i~~~~~~~~~~~~l~s~~~dg~v~ 225 (394)
+|.|..||.+.......+.... .|. ..|+++.|+. ++-.+++|..+|.+.
T Consensus 196 ---------------------~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~ 253 (703)
T KOG2321|consen 196 ---------------------DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVL 253 (703)
T ss_pred ---------------------CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEE
Confidence 9999999999887666655311 122 2499999997 799999999999999
Q ss_pred EEEccccceeeccccccCCCCCCCCcccccccee-eeecCCCceEEEEEe----CcEEEEeecCCeEEEecCCCCCCCCC
Q 016185 226 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPG 300 (394)
Q Consensus 226 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~----~~~l~~~~~dg~i~~~d~~~~~~~~~ 300 (394)
|||++.. .|+. .-.....+|..+.|. ++.+++ .....++|||-.+++.
T Consensus 254 iyDLRa~-----------------------~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~--- 306 (703)
T KOG2321|consen 254 IYDLRAS-----------------------KPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKP--- 306 (703)
T ss_pred EEEcccC-----------------------CceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCc---
Confidence 9999993 2332 222334457777774 234444 5567899999998873
Q ss_pred CCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 301 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 301 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
..... +...++.+++-|+. -+++++..++.+..|=+..-
T Consensus 307 ------~asiE-pt~~lND~C~~p~s--Gm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 307 ------MASIE-PTSDLNDFCFVPGS--GMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ------eeecc-ccCCcCceeeecCC--ceEEEecCCCcceeEEcccc
Confidence 22222 33458889999998 58999999998888876543
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=1.3e-11 Score=106.53 Aligned_cols=276 Identities=13% Similarity=0.075 Sum_probs=158.2
Q ss_pred ceEEEEe-cCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEe
Q 016185 49 FNVFATV-GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (394)
Q Consensus 49 ~~~las~-~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 126 (394)
+++++.. ..++ |.|.|..+.+.+..+... ..+ .....++|||+ ++++.+.||.|.++|+.+.+.+.+++.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~------~~~-h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTG------GAP-HAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-S------TTE-EEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCC------CCc-eeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEec
Confidence 4555443 3334 999999999988888732 122 22233559999 888889999999999999999999986
Q ss_pred cCCceeEEEEcCCCCcEEE-EceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccC----CCccc
Q 016185 127 HGDSINEIRTQPLKPSLVV-SASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAG----GHRNE 201 (394)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~ 201 (394)
.. ....+++++ ++++++ +... .+.+.++|.++.+.++.+.... ....+
T Consensus 77 G~-~~~~i~~s~-DG~~~~v~n~~-------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~R 129 (369)
T PF02239_consen 77 GG-NPRGIAVSP-DGKYVYVANYE-------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESR 129 (369)
T ss_dssp SS-EEEEEEE---TTTEEEEEEEE-------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---
T ss_pred CC-CcceEEEcC-CCCEEEEEecC-------------------------CCceeEeccccccceeecccccccccccCCC
Confidence 44 467899999 555555 5556 8999999999999988876311 12356
Q ss_pred EEEEEecCCCCe-eEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEE
Q 016185 202 VLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 278 (394)
Q Consensus 202 i~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 278 (394)
+.++..+| ... ++++--..+.|.+.|....+. ................|+ ++++
T Consensus 130 v~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~----------------------~~~~~i~~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 130 VAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKN----------------------LKVTTIKVGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSC----------------------EEEEEEE--TTEEEEEE-TTSSEE
T ss_pred ceeEEecC-CCCEEEEEEccCCeEEEEEeccccc----------------------cceeeecccccccccccCccccee
Confidence 78888888 555 445555558888888777321 111222233455666776 6665
Q ss_pred EE-eecCCeEEEecCCCCCCCCCCCcceeccc-ccCCCCCeEEE-------EEeecCCcceEEEEeCCCcEEEEEecCCC
Q 016185 279 LS-KSVDNEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFI-------KFSCDFHYNAAAIGNREGKIFVWELQSSP 349 (394)
Q Consensus 279 ~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~-------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (394)
+. ...+..|-++|.++++... .+.. ...|..+...+ .|...+.....++.-....+.+||....
T Consensus 187 ~va~~~sn~i~viD~~~~k~v~------~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w- 259 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGKLVA------LIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW- 259 (369)
T ss_dssp EEEEGGGTEEEEEETTTTEEEE------EEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT-
T ss_pred eecccccceeEEEeeccceEEE------EeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC-
Confidence 55 4567899999988775311 1100 11122222221 1222222122222222335556776665
Q ss_pred ceeeEEeccCCccCCeeEEEeccCCCEEEEe----ccCCeEEEEEcCC
Q 016185 350 PVLIARLSHAQSKSPIRQTAMSYDGSTILSC----CEDGAIWRWDAIP 393 (394)
Q Consensus 350 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~ 393 (394)
+.+.+++ ....+ .-+..+|++++|.+. ...+.|.++|.++
T Consensus 260 -kvv~~I~--~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 260 -KVVKTIP--TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp -SEEEEEE---SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred -eEEEEEE--CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 4667776 33344 678889999999988 4558899999875
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.2e-12 Score=116.78 Aligned_cols=231 Identities=13% Similarity=0.050 Sum_probs=139.7
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec---CCeEEEEECCCCeeEEEEEecCCceeEEEE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (394)
|.+||.... ....+. .+...+...+|+ |||+ .|+..+. +..|.+||+.+++.. .+..+.+...+.+|
T Consensus 186 l~i~D~~g~-~~~~lt-----~~~~~v~~p~wS--pDg~-~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~ 255 (433)
T PRK04922 186 LQVADSDGY-NPQTIL-----RSAEPILSPAWS--PDGK-KLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSF 255 (433)
T ss_pred EEEECCCCC-CceEee-----cCCCccccccCC--CCCC-EEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceE
Confidence 888997543 334444 345567778888 9999 7776653 346999999877653 33334445568899
Q ss_pred cCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC--cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCee
Q 016185 137 QPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 214 (394)
Q Consensus 137 ~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (394)
+|++..++++.+. +| .|.+||+.+++... +. .+.......+|+| +++.
T Consensus 256 SpDG~~l~~~~s~-------------------------~g~~~Iy~~d~~~g~~~~-lt---~~~~~~~~~~~sp-DG~~ 305 (433)
T PRK04922 256 SPDGRRLALTLSR-------------------------DGNPEIYVMDLGSRQLTR-LT---NHFGIDTEPTWAP-DGKS 305 (433)
T ss_pred CCCCCEEEEEEeC-------------------------CCCceEEEEECCCCCeEE-Cc---cCCCCccceEECC-CCCE
Confidence 9954445556555 54 59999998877544 33 3444556789999 8877
Q ss_pred EEeec-cCCc--EEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCC---e
Q 016185 215 IASCG-MDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---E 286 (394)
Q Consensus 215 l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg---~ 286 (394)
|+..+ .+|. |.++|+.+++ ...+..+.......+|+ |++++..+.++ .
T Consensus 306 l~f~sd~~g~~~iy~~dl~~g~------------------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~ 361 (433)
T PRK04922 306 IYFTSDRGGRPQIYRVAASGGS------------------------AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYR 361 (433)
T ss_pred EEEEECCCCCceEEEEECCCCC------------------------eEEeecCCCCccCEEECCCCCEEEEEECCCCcee
Confidence 77655 4555 5555655422 11111222233345665 77777654433 6
Q ss_pred EEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC---CCcEEEEEecCCCceeeEEeccCCccC
Q 016185 287 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLSHAQSKS 363 (394)
Q Consensus 287 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (394)
|.+||+.+++. ..+.. ........|+|+++ +++..+. .+.|.++++... ....+. .+.+
T Consensus 362 I~v~d~~~g~~----------~~Lt~-~~~~~~p~~spdG~--~i~~~s~~~g~~~L~~~~~~g~---~~~~l~--~~~g 423 (433)
T PRK04922 362 IAVMDLSTGSV----------RTLTP-GSLDESPSFAPNGS--MVLYATREGGRGVLAAVSTDGR---VRQRLV--SADG 423 (433)
T ss_pred EEEEECCCCCe----------EECCC-CCCCCCceECCCCC--EEEEEEecCCceEEEEEECCCC---ceEEcc--cCCC
Confidence 99999987642 11111 11233568999994 5555443 235777777543 344444 3345
Q ss_pred CeeEEEecc
Q 016185 364 PIRQTAMSY 372 (394)
Q Consensus 364 ~v~~~~~s~ 372 (394)
.+...+|+|
T Consensus 424 ~~~~p~wsp 432 (433)
T PRK04922 424 EVREPAWSP 432 (433)
T ss_pred CCCCCccCC
Confidence 677778876
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.2e-11 Score=105.39 Aligned_cols=294 Identities=16% Similarity=0.196 Sum_probs=184.9
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee-------
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------- 105 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~------- 105 (394)
..+.+..++|+ +|+++|.+..+.+.|++...+..+-... .. .++.+.|+ |.|. +|.+--
T Consensus 34 ~~~~~v~~~S~----~G~lfA~~~~~~v~i~~~~~~~~~lt~~------~~-~~~~L~fS--P~g~-yL~T~e~~~i~~~ 99 (566)
T KOG2315|consen 34 SRPCNVFAYSN----NGRLFAYSDNQVVKVFEIATLKVVLCVE------LK-KTYDLLFS--PKGN-YLLTWEPWAIYGP 99 (566)
T ss_pred CCcceeEEEcC----CCcEEEEEcCCeEEEEEccCCcEEEEec------cc-eeeeeeec--cccc-ccccccccccccC
Confidence 34577888888 7999999988889999988876332222 12 55666666 8898 777631
Q ss_pred ---cCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEE
Q 016185 106 ---INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWN 182 (394)
Q Consensus 106 ---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd 182 (394)
....+.+|+++++.....+..-...-++..|++ +..+.+--. .+.+++|+
T Consensus 100 ~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~-dEsl~arlv--------------------------~nev~f~~ 152 (566)
T KOG2315|consen 100 KNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSI-DESLAARLV--------------------------SNEVQFYD 152 (566)
T ss_pred CCCCCCceeeeeeccceehhheehhhhcCccccccc-chhhhhhhh--------------------------cceEEEEe
Confidence 134578999998655555553222226889998 444433322 56799999
Q ss_pred ecCCcEEEEeeccCCCcccEEEEEecCCC-C-eeEEe-----eccCCcEEEEEccccce-----------eeccccccCC
Q 016185 183 VQTGICILIFAGAGGHRNEVLSVDFHPSD-I-YRIAS-----CGMDNTVKIWSMKEFWT-----------YVEKSFTWTD 244 (394)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~l~s-----~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~ 244 (394)
....+.+..- -|...|+.+.++| . . ..+++ .+.-+.|++|....... .....+.|..
T Consensus 153 ~~~f~~~~~k----l~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~ 227 (566)
T KOG2315|consen 153 LGSFKTIQHK----LSVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNK 227 (566)
T ss_pred cCCccceeee----eeccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEecc
Confidence 8764433332 2678899999998 5 2 23332 34556799998873110 0011222332
Q ss_pred CCCCC-----------Cccccc-c----------ceeeeecCCCceEEEEEe--CcE--EEEeecCCeEEEecCCCCCCC
Q 016185 245 LPSKF-----------PTKYVQ-F----------PVFIASVHSNYVDCNRWL--GDF--ILSKSVDNEIVLWEPKMKEQS 298 (394)
Q Consensus 245 ~~~~~-----------~~~~~~-~----------~~~~~~~~~~~i~~~~~~--~~~--l~~~~~dg~i~~~d~~~~~~~ 298 (394)
....+ .....+ . ....--...++|.++.|+ ++- ++-|-.--.+.+||++..
T Consensus 228 ~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--- 304 (566)
T KOG2315|consen 228 LGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--- 304 (566)
T ss_pred CCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---
Confidence 11110 000000 0 111111236789999998 443 334456778999999854
Q ss_pred CCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC---CCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCC
Q 016185 299 PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS 375 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 375 (394)
.+ +...+++-+++-|+|.+ ++++.++- -|.|.|||+.+. +++..+.. ..-+-+.|+|||+
T Consensus 305 -------~v--~df~egpRN~~~fnp~g--~ii~lAGFGNL~G~mEvwDv~n~--K~i~~~~a----~~tt~~eW~PdGe 367 (566)
T KOG2315|consen 305 -------PV--FDFPEGPRNTAFFNPHG--NIILLAGFGNLPGDMEVWDVPNR--KLIAKFKA----ANTTVFEWSPDGE 367 (566)
T ss_pred -------Ee--EeCCCCCccceEECCCC--CEEEEeecCCCCCceEEEeccch--hhcccccc----CCceEEEEcCCCc
Confidence 23 33445667789999999 46666553 589999999985 45666652 2345589999999
Q ss_pred EEEEecc------CCeEEEEEcC
Q 016185 376 TILSCCE------DGAIWRWDAI 392 (394)
Q Consensus 376 ~l~s~~~------dg~i~iwd~~ 392 (394)
+++++.. |+.++||++.
T Consensus 368 ~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 368 YFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEEEEeccccEEecCCeEEEEec
Confidence 9998864 6889999975
No 234
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4e-12 Score=112.35 Aligned_cols=367 Identities=13% Similarity=0.128 Sum_probs=229.0
Q ss_pred eeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCC--------cceEEEEecCCc-EEEEEcCCCceeEEe
Q 016185 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSR--------YFNVFATVGGNR-VTVYQCLEGGVIAAL 74 (394)
Q Consensus 4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~--------~~~~las~~~d~-i~vw~~~~~~~~~~~ 74 (394)
.|.||......+ +...++....++-|+..|+.+.|.|...+ ..-+||++.-.| |.+||...+..+..+
T Consensus 29 iAygshslV~VV---Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l 105 (1062)
T KOG1912|consen 29 IAYGSHSLVSVV---DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL 105 (1062)
T ss_pred EEEecCceEEEE---ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh
Confidence 344554443222 34567778888999999999999973211 223577777677 999999998887777
Q ss_pred eecccCCcccceEEEEEEEcCCCC-cEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcE-EEEcee---
Q 016185 75 QSYVDEDKEESFYTVSWACNVDGI-PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSL-VVSASK--- 149 (394)
Q Consensus 75 ~~~~~~~~~~~v~~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~--- 149 (394)
+ .+..++..++|.+..+.. .+|++-.....+.+|+..+|+.............|+.+.|.+... .+.++.
T Consensus 106 ~-----~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 106 S-----HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred c-----CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence 7 678889999998765543 577777778899999999999888877655667778877755433 223322
Q ss_pred ----------------eeEEeec--------------------------------------------------------c
Q 016185 150 ----------------VIIISSL--------------------------------------------------------S 157 (394)
Q Consensus 150 ----------------~i~~~~~--------------------------------------------------------~ 157 (394)
.+++-+. -
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch
Confidence 1111100 0
Q ss_pred ----------------ceeee-eeeccceeeeccCCcEEEEEecC----------------CcEEEEeeccCCCcccEEE
Q 016185 158 ----------------LICLL-LFIRSNCLRVGQDESVRLWNVQT----------------GICILIFAGAGGHRNEVLS 204 (394)
Q Consensus 158 ----------------~~~~~-~~~~~~~~~~~~d~~i~vwd~~~----------------~~~~~~~~~~~~~~~~i~~ 204 (394)
++..+ .+..+-++....||.+.+|-.+. ++....+.. ..+-.+..
T Consensus 261 ~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~--m~~~rp~~ 338 (1062)
T KOG1912|consen 261 YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP--MEEFRPVI 338 (1062)
T ss_pred hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee--chhcccce
Confidence 00000 11234577788899998887553 222222221 01122233
Q ss_pred EEecCCCCeeEEeeccCCcEEEEEccccceeeccc---------cccCCCCCCCCccccccceeeeecCCCceEEEEEe-
Q 016185 205 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS---------FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 274 (394)
Q Consensus 205 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 274 (394)
....|.+.+.++.-..+|.+.+|.+++++...... +.+...+...... .-..+.....|+....+....
T Consensus 339 ~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~-~l~~LS~dg~h~sGs~~~~~~p 417 (1062)
T KOG1912|consen 339 GASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKT-SLISLSDDGSHSSGSTCVRMRP 417 (1062)
T ss_pred eecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhc-cccchhhcCCCCCCceeeeccc
Confidence 33445345556666678999999998644322111 1111111000000 000011122344443333321
Q ss_pred -------------------CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEE---
Q 016185 275 -------------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA--- 332 (394)
Q Consensus 275 -------------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~--- 332 (394)
-.+++.|...|+|.++|+.++. ....+..|.+.|.++.|--+. .++-
T Consensus 418 ~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~---------v~~~fsvht~~VkgleW~g~s--slvSfsy 486 (1062)
T KOG1912|consen 418 MPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA---------VAASFSVHTSLVKGLEWLGNS--SLVSFSY 486 (1062)
T ss_pred CcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh---------hhhhhcccccceeeeeeccce--eEEEeee
Confidence 1278899999999999999886 667888899999999987665 2222
Q ss_pred ------EEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 333 ------IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 333 ------~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+|+.-+.+.+-|+++|-.+.++.++ .....+|..+..|..++||+..-.|.-+.+||+++
T Consensus 487 s~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~-~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 487 SHVNSASGGVRNDLVVTDLRTGLSKRFRGLQ-KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred ccccccccceeeeEEEEEcccccccccccCC-CCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 2223356788899998544444333 34568999999999999999999999999999865
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=3.7e-12 Score=113.87 Aligned_cols=214 Identities=12% Similarity=0.055 Sum_probs=136.5
Q ss_pred CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
..|.++|.. +...+.+..|...+.+.+|+| +++.|+..+. ...+..|.+||+.+++
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~----------------------~~g~~~i~~~dl~~g~ 237 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSP-NRQEITYMSY----------------------ANGRPRVYLLDLETGQ 237 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECC-CCCEEEEEEe----------------------cCCCCEEEEEECCCCc
Confidence 478889874 555566777888999999999 6666665543 0014689999998887
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeE-EeeccCCc--EEEEEccccceeeccccccCCCCCCCCccccccceeeeecC
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 264 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (394)
... +. .+...+....|+| +++.| ++.+.++. |.+||+.++. ...+..+
T Consensus 238 ~~~-l~---~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~------------------------~~~Lt~~ 288 (435)
T PRK05137 238 REL-VG---NFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGT------------------------TTRLTDS 288 (435)
T ss_pred EEE-ee---cCCCcccCcEECC-CCCEEEEEEecCCCceEEEEECCCCc------------------------eEEccCC
Confidence 643 33 3566778899999 77655 45566665 6666776632 2233334
Q ss_pred CCceEEEEEe--CcEEEEeec-CC--eEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCC--
Q 016185 265 SNYVDCNRWL--GDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-- 337 (394)
Q Consensus 265 ~~~i~~~~~~--~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-- 337 (394)
........|+ |+.++..+. +| .|.++|+..++ ...+......+....|+|+++ .++....+
T Consensus 289 ~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----------~~~lt~~~~~~~~~~~SpdG~--~ia~~~~~~~ 356 (435)
T PRK05137 289 PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----------PRRISFGGGRYSTPVWSPRGD--LIAFTKQGGG 356 (435)
T ss_pred CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----------eEEeecCCCcccCeEECCCCC--EEEEEEcCCC
Confidence 4445556676 677766553 33 68888877653 122222233455678999994 56655432
Q ss_pred -CcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccC------CeEEEEEcC
Q 016185 338 -GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED------GAIWRWDAI 392 (394)
Q Consensus 338 -g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~ 392 (394)
..|.+||+..+. ...+.. + ..+....|+|||+.|+..+.+ ..|+++|+.
T Consensus 357 ~~~i~~~d~~~~~---~~~lt~-~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 357 QFSIGVMKPDGSG---ERILTS-G--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred ceEEEEEECCCCc---eEeccC-C--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 367888876553 223331 1 246678999999998865543 257777764
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.5e-12 Score=113.37 Aligned_cols=231 Identities=11% Similarity=0.038 Sum_probs=142.7
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec---CCeEEEEECCCCeeEEEEEecCCceeEEEE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (394)
|.++|... ...+.+. .+...+...+|+ |||+ .|+..+. +..|.+||+.+++. ..+..+.+.+...+|
T Consensus 184 l~~~d~dg-~~~~~lt-----~~~~~v~~p~wS--pDG~-~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 184 LAIMDQDG-ANVRYLT-----DGSSLVLTPRFS--PNRQ-EITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRF 253 (435)
T ss_pred EEEECCCC-CCcEEEe-----cCCCCeEeeEEC--CCCC-EEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEE
Confidence 88888644 4444444 356678888888 9999 6666543 46899999988765 345556667788999
Q ss_pred cCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCc--EEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCee
Q 016185 137 QPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDES--VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 214 (394)
Q Consensus 137 ~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (394)
+|++..++++.+. ++. |.+||+.+++... +. .+........|+| +++.
T Consensus 254 SPDG~~la~~~~~-------------------------~g~~~Iy~~d~~~~~~~~-Lt---~~~~~~~~~~~sp-DG~~ 303 (435)
T PRK05137 254 SPDGRKVVMSLSQ-------------------------GGNTDIYTMDLRSGTTTR-LT---DSPAIDTSPSYSP-DGSQ 303 (435)
T ss_pred CCCCCEEEEEEec-------------------------CCCceEEEEECCCCceEE-cc---CCCCccCceeEcC-CCCE
Confidence 9954445556665 555 7777887776544 33 3555667899999 8887
Q ss_pred EEeecc-CC--cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecC---Ce
Q 016185 215 IASCGM-DN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NE 286 (394)
Q Consensus 215 l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---g~ 286 (394)
|+..+. +| .|.++|+.... ...+..+...+....|+ |+.++....+ ..
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~------------------------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~ 359 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSN------------------------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFS 359 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCC------------------------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceE
Confidence 776653 33 57777766522 12222233344555665 7777765543 36
Q ss_pred EEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC-C-----CcEEEEEecCCCceeeEEeccCC
Q 016185 287 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-E-----GKIFVWELQSSPPVLIARLSHAQ 360 (394)
Q Consensus 287 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~ 360 (394)
|.+||+..+.. ..+.. ...+....|+|+++ .|+..+. . ..|+++|+..+.. ..+..
T Consensus 360 i~~~d~~~~~~----------~~lt~-~~~~~~p~~spDG~--~i~~~~~~~~~~~~~~L~~~dl~g~~~---~~l~~-- 421 (435)
T PRK05137 360 IGVMKPDGSGE----------RILTS-GFLVEGPTWAPNGR--VIMFFRQTPGSGGAPKLYTVDLTGRNE---REVPT-- 421 (435)
T ss_pred EEEEECCCCce----------EeccC-CCCCCCCeECCCCC--EEEEEEccCCCCCcceEEEEECCCCce---EEccC--
Confidence 88888765431 11111 12355778999995 5544332 2 2577888766532 33331
Q ss_pred ccCCeeEEEeccC
Q 016185 361 SKSPIRQTAMSYD 373 (394)
Q Consensus 361 ~~~~v~~~~~s~~ 373 (394)
.+.+...+|+|-
T Consensus 422 -~~~~~~p~Wsp~ 433 (435)
T PRK05137 422 -PGDASDPAWSPL 433 (435)
T ss_pred -CCCccCcccCCC
Confidence 234666778763
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.5e-12 Score=114.28 Aligned_cols=217 Identities=13% Similarity=0.113 Sum_probs=131.6
Q ss_pred eccCccceeEEEEEeeCCCcceEEEEecC---Cc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEE-E
Q 016185 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGG---NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV-A 103 (394)
Q Consensus 29 ~~~h~~~v~~i~~sp~~~~~~~~las~~~---d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~-s 103 (394)
+..+...+.+.+||| +|+.||..+. +. +.+|++.+++.. .+..+ .+.....+|+ |||+ .|+ +
T Consensus 194 lt~~~~~~~~p~wSP----DG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~-----~~~~~~~~~S--PDG~-~La~~ 260 (429)
T PRK03629 194 VHRSPQPLMSPAWSP----DGSKLAYVTFESGRSALVIQTLANGAVR-QVASF-----PRHNGAPAFS--PDGS-KLAFA 260 (429)
T ss_pred eecCCCceeeeEEcC----CCCEEEEEEecCCCcEEEEEECCCCCeE-EccCC-----CCCcCCeEEC--CCCC-EEEEE
Confidence 444667899999999 7888876532 22 999999877642 22211 1223345666 9999 555 4
Q ss_pred eecCC--eEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEE
Q 016185 104 GGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLW 181 (394)
Q Consensus 104 ~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw 181 (394)
.+.+| .|.+||+++++..+ +..+...+....|+| +++.|+..+. .++...+|
T Consensus 261 ~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP-DG~~I~f~s~------------------------~~g~~~Iy 314 (429)
T PRK03629 261 LSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP-DSQNLAYTSD------------------------QAGRPQVY 314 (429)
T ss_pred EcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC-CCCEEEEEeC------------------------CCCCceEE
Confidence 45555 58899998876544 443445678899999 5665554443 04444455
Q ss_pred --EecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccC---CcEEEEEccccceeeccccccCCCCCCCCcccccc
Q 016185 182 --NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256 (394)
Q Consensus 182 --d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (394)
|+.+++.. .+. ..........|+| +++.|+..+.+ ..|.+||+.++..
T Consensus 315 ~~d~~~g~~~-~lt---~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~---------------------- 367 (429)
T PRK03629 315 KVNINGGAPQ-RIT---WEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV---------------------- 367 (429)
T ss_pred EEECCCCCeE-Eee---cCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCCe----------------------
Confidence 66555443 333 2344556789999 88877765543 3588888877431
Q ss_pred ceeeeecCCCceEEEEEe--CcEEEEeecCCe---EEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEee
Q 016185 257 PVFIASVHSNYVDCNRWL--GDFILSKSVDNE---IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 324 (394)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~---i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 324 (394)
..+... .......|+ |++++.++.++. +.++++.... ...+..+...+...+|+|
T Consensus 368 --~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~----------~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 368 --QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF----------KARLPATDGQVKFPAWSP 427 (429)
T ss_pred --EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC----------eEECccCCCCcCCcccCC
Confidence 111110 111233444 788888887664 6777775442 344555666677777776
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=9.6e-12 Score=110.72 Aligned_cols=234 Identities=13% Similarity=0.109 Sum_probs=136.7
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec---CCeEEEEECCCCeeEEEEEecCCceeEEEE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (394)
|.++|. ++.....+. .+...+...+|+ |||+ .|+..+. ...|.+||+.+++... +....+.+....|
T Consensus 178 L~~~D~-dG~~~~~l~-----~~~~~v~~p~wS--PDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~ 247 (427)
T PRK02889 178 LQISDA-DGQNAQSAL-----SSPEPIISPAWS--PDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAW 247 (427)
T ss_pred EEEECC-CCCCceEec-----cCCCCcccceEc--CCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 777775 344434443 345667778888 9998 6665543 2459999998886543 3334455678999
Q ss_pred cCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec--CCcEEEEeeccCCCcccEEEEEecCCCCee
Q 016185 137 QPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ--TGICILIFAGAGGHRNEVLSVDFHPSDIYR 214 (394)
Q Consensus 137 ~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (394)
+|++..++++.+. ++...+|.++ .+. ...+. .+........|+| |++.
T Consensus 248 SPDG~~la~~~~~-------------------------~g~~~Iy~~d~~~~~-~~~lt---~~~~~~~~~~wSp-DG~~ 297 (427)
T PRK02889 248 SPDGRTLAVALSR-------------------------DGNSQIYTVNADGSG-LRRLT---QSSGIDTEPFFSP-DGRS 297 (427)
T ss_pred CCCCCEEEEEEcc-------------------------CCCceEEEEECCCCC-cEECC---CCCCCCcCeEEcC-CCCE
Confidence 9954445556677 7877776653 333 34443 3444566788999 8887
Q ss_pred EEeec-cCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCC---eEE
Q 016185 215 IASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIV 288 (394)
Q Consensus 215 l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg---~i~ 288 (394)
|+..+ .+|...+|.+..... ....+..+........|+ |++++..+.++ .|.
T Consensus 298 l~f~s~~~g~~~Iy~~~~~~g----------------------~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 298 IYFTSDRGGAPQIYRMPASGG----------------------AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLY 355 (427)
T ss_pred EEEEecCCCCcEEEEEECCCC----------------------ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEE
Confidence 76554 456777776643110 011111112222334554 78887766554 699
Q ss_pred EecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEe-CCCc--EEEEEecCCCceeeEEeccCCccCCe
Q 016185 289 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGK--IFVWELQSSPPVLIARLSHAQSKSPI 365 (394)
Q Consensus 289 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v 365 (394)
+||+.+++. ..+... .......|+|+++ .|+..+ ..|. +++.++... ....+. .+.+.+
T Consensus 356 v~d~~~g~~----------~~lt~~-~~~~~p~~spdg~--~l~~~~~~~g~~~l~~~~~~g~---~~~~l~--~~~g~~ 417 (427)
T PRK02889 356 VQDLATGQV----------TALTDT-TRDESPSFAPNGR--YILYATQQGGRSVLAAVSSDGR---IKQRLS--VQGGDV 417 (427)
T ss_pred EEECCCCCe----------EEccCC-CCccCceECCCCC--EEEEEEecCCCEEEEEEECCCC---ceEEee--cCCCCC
Confidence 999987642 111111 1235678999995 555544 3433 445555322 334444 344667
Q ss_pred eEEEeccC
Q 016185 366 RQTAMSYD 373 (394)
Q Consensus 366 ~~~~~s~~ 373 (394)
...+|+|-
T Consensus 418 ~~p~wsp~ 425 (427)
T PRK02889 418 REPSWGPF 425 (427)
T ss_pred CCCccCCC
Confidence 77888874
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=9e-10 Score=95.30 Aligned_cols=277 Identities=16% Similarity=0.129 Sum_probs=161.3
Q ss_pred cEEEEEcC-CCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec----CCeEEEEECCCC--e--eEEEEEecCC
Q 016185 59 RVTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----NGIIRVIDVSNE--K--LHKSFVGHGD 129 (394)
Q Consensus 59 ~i~vw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~--~--~~~~~~~~~~ 129 (394)
+|.+|++. +...+..+.... ....-.-++++ |+++ +|.+... +|.|..|++... + .+.+......
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~--~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVA---EGENPSWLAVS--PDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEE---ESSSECCEEE---TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred cEEEEEEcCCCCCceEeeeec---CCCCCceEEEE--eCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 48888882 333333333221 12223346665 8898 7777765 579999988764 2 3344443444
Q ss_pred ceeEEEEcCCCCcEEEEc-eeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC-CcEEEE---eec----c---CC
Q 016185 130 SINEIRTQPLKPSLVVSA-SKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT-GICILI---FAG----A---GG 197 (394)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~-~~~~~~---~~~----~---~~ 197 (394)
....++++| ++.+|+++ -. +|.|.++++.. |..... +.. . +.
T Consensus 88 ~p~~i~~~~-~g~~l~vany~-------------------------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq 141 (345)
T PF10282_consen 88 SPCHIAVDP-DGRFLYVANYG-------------------------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQ 141 (345)
T ss_dssp CEEEEEECT-TSSEEEEEETT-------------------------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTT
T ss_pred CcEEEEEec-CCCEEEEEEcc-------------------------CCeEEEEEccCCcccceeeeecccCCCCCccccc
Confidence 556799999 55555554 45 89999999986 433322 210 0 01
Q ss_pred CcccEEEEEecCCCCeeEEee-ccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeee-cCCCceEEEEEe-
Q 016185 198 HRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL- 274 (394)
Q Consensus 198 ~~~~i~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~- 274 (394)
......++.++| +++++++. -....|.+|++......+. +...+. .....-+.+.|+
T Consensus 142 ~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~-------------------~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 142 EGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLT-------------------PVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp SSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEE-------------------EEEEEECSTTSSEEEEEE-T
T ss_pred ccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEE-------------------EeeccccccCCCCcEEEEcC
Confidence 234578899999 87766664 3356799999987331110 011111 233446677776
Q ss_pred -CcEEE-EeecCCeEEEecCCCCCCCCCCCcceeccccc---CCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecC--
Q 016185 275 -GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-- 347 (394)
Q Consensus 275 -~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-- 347 (394)
+++++ +.-.++.|.+|++..... .....+.+..+. ........++++|+++ .++++...++.|.+|++..
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~-~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGR-FLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSS-EEEEEECTTTEEEEEEECTTT
T ss_pred CcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCC-EEEEEeccCCEEEEEEEecCC
Confidence 55554 445688899998883211 000111111111 1122578899999995 2444455678899999943
Q ss_pred CCceeeEEeccCCccCCeeEEEeccCCCEEEEec-cCCeEEEEEcC
Q 016185 348 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAI 392 (394)
Q Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~ 392 (394)
+....+..+. ........++++|+|++|+++. .++.|.+|++.
T Consensus 279 g~l~~~~~~~--~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 279 GTLTLVQTVP--TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTEEEEEEEE--ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEEEEEe--CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 4444444544 2234589999999999999876 56789999875
No 240
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.3e-11 Score=105.96 Aligned_cols=190 Identities=16% Similarity=0.260 Sum_probs=154.2
Q ss_pred cceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcC-----------------CCCcEEEEeecCCe
Q 016185 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-----------------DGIPFLVAGGINGI 109 (394)
Q Consensus 48 ~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~~~~l~s~~~dg~ 109 (394)
-..++|....|+ +++|+..+++.-..+.... ...+.-.+..|.... .+...++-|...|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 467899998888 9999999888766665322 234445556665432 23447888899999
Q ss_pred EEEEECCCCeeEEEEE--ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 110 IRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 110 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
|.+|++..++....+. .|.+.|.++.++. +...|.+++. |+.+..|+....+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~a-------------------------d~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGA-------------------------DLKVVYILEKEKV 135 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCC-------------------------ceeEEEEecccce
Confidence 9999999999988887 6899999999988 7789999999 9999999999999
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCc
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (394)
.++.++ +.+..+.+++.+| |+..+++++ ++|++||+.+ .+.+..+.+|.+.
T Consensus 136 ~~~~~~---~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~-----------------------kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 136 IIRIWK---EQKPLVSSLCISP-DGKILLTAS--RQIKVLDIET-----------------------KEVVITFTGHGSP 186 (541)
T ss_pred eeeeec---cCCCccceEEEcC-CCCEEEecc--ceEEEEEccC-----------------------ceEEEEecCCCcc
Confidence 999988 7888899999999 899999886 6899999999 5568899999999
Q ss_pred eEEEEEe-------CcEEEEe-ecCCeEEEecCCC
Q 016185 268 VDCNRWL-------GDFILSK-SVDNEIVLWEPKM 294 (394)
Q Consensus 268 i~~~~~~-------~~~l~~~-~~dg~i~~~d~~~ 294 (394)
|.++.|. |.+++++ ..+.-+.+|-.+.
T Consensus 187 v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 187 VRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999994 5666654 3466677787665
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=2.6e-12 Score=100.67 Aligned_cols=116 Identities=28% Similarity=0.443 Sum_probs=89.8
Q ss_pred cccceEEEEEEEcCCCCcEE-EEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 82 KEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
..++|..++|+ |+|+.++ +.|..++.|.+||++ ++.+..+. ...+..+.|+| ++++++.++.
T Consensus 58 ~~~~I~~~~Ws--P~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~----------- 120 (194)
T PF08662_consen 58 KEGPIHDVAWS--PNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGF----------- 120 (194)
T ss_pred CCCceEEEEEC--cCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEc-----------
Confidence 34579999999 8888333 335567899999986 66666664 46788999999 7788888764
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeecc------CCcEEEEEccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM------DNTVKIWSMKE 231 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~------dg~v~iwd~~~ 231 (394)
+...|.|.+||+++.+.+.... |. .++.++|+| +|++|+++.. |..++||+...
T Consensus 121 -----------~n~~G~l~~wd~~~~~~i~~~~----~~-~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 121 -----------GNLNGDLEFWDVRKKKKISTFE----HS-DATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred -----------cCCCcEEEEEECCCCEEeeccc----cC-cEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 1124779999999888887765 43 478999999 9999998864 78899999865
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=2.2e-12 Score=117.43 Aligned_cols=271 Identities=16% Similarity=0.145 Sum_probs=182.7
Q ss_pred cceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecc-cCCc--ccceEEEEEEEcCCCCcEEEEeecCCeE
Q 016185 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV-DEDK--EESFYTVSWACNVDGIPFLVAGGINGII 110 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~~~~l~s~~~dg~i 110 (394)
+++++.++-. ++|.+|..-.|.+||+..+..+..+..+. .+.| ++.+. -.+. +++++..-+.+
T Consensus 8 ~~l~~~~~~~------~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-------l~~~-~~v~~~~~~~v 73 (967)
T KOG0974|consen 8 GPLNLPQLVS------DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-------LLSG-KIVTCAKSDEV 73 (967)
T ss_pred ccccchhhcc------ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccce-------eccc-eEEEEEeecce
Confidence 4555555542 46766666669999999988765554321 1122 00000 0122 45555444444
Q ss_pred EEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEE
Q 016185 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICIL 190 (394)
Q Consensus 111 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~ 190 (394)
..=+.. .+....+. +.|....+.. ....++.... +..+.+||...+....
T Consensus 74 ~~~~~~-~~~~~~~s---~wi~g~~l~~-e~k~i~l~~~-------------------------~ns~~i~d~~~~~~~~ 123 (967)
T KOG0974|consen 74 YVKEAS-NQIIERFS---DWIFGAKLFE-ENKKIALVTS-------------------------RNSLLIRDSKNSSVLS 123 (967)
T ss_pred eecchh-hhhhhhcc---ccccccchhh-hcceEEEEEc-------------------------CceEEEEecccCceeh
Confidence 332221 11122222 2333344444 3455555555 8999999998887776
Q ss_pred EeeccCCCcccE-----EEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 191 IFAGAGGHRNEV-----LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 191 ~~~~~~~~~~~i-----~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
.+. +.... .-+.+++ +.-++++|+.-+.|.+|++... ..|. .+.+|.
T Consensus 124 ~i~----~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d----------------------n~p~-~l~GHe 175 (967)
T KOG0974|consen 124 KIQ----SDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHED----------------------NKPI-RLKGHE 175 (967)
T ss_pred hcC----CCceEEEEeEEEEeccC-cEEEEEeccccccEEEEecccc----------------------CCcc-eecccC
Confidence 665 33222 2233455 7788999999999999998841 1222 688999
Q ss_pred CceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEE
Q 016185 266 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 343 (394)
Q Consensus 266 ~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iw 343 (394)
+.|.++.++ |.++++.+.|.++++|++++.+.. ....-+|...++.++|.|+ .+++++.|.+.++|
T Consensus 176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~--------~~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW 243 (967)
T KOG0974|consen 176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL--------GCTGFGHSARVWACCFLPN----RIITVGEDCTCRVW 243 (967)
T ss_pred CceEEEEEccCCcEEEEEecCcceeeeeccccccc--------CcccccccceeEEEEeccc----eeEEeccceEEEEE
Confidence 999999995 999999999999999999998742 2355678999999999998 59999999999999
Q ss_pred EecCCCceeeEEeccCCcc-CCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 344 ELQSSPPVLIARLSHAQSK-SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+....+ +..+. +|. ..+..++..++...+++++.||.+++||+..
T Consensus 244 ~~~~~~---l~~y~--~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 244 GVNGTQ---LEVYD--EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ecccce---ehhhh--hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 776553 23444 332 5689999999999999999999999999753
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.50 E-value=1.2e-11 Score=97.18 Aligned_cols=256 Identities=14% Similarity=0.152 Sum_probs=162.0
Q ss_pred ccceeEEEEEeeCCCcce-EEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceE-EEEEEEcCCCCcEEEEeecCCe
Q 016185 33 KRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY-TVSWACNVDGIPFLVAGGINGI 109 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~-~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~s~~~dg~ 109 (394)
+..+..+.|.- ...+|. .++-+...+ |.+|.....+....+..... ..-.+. +++..+++.+. -++++..+|.
T Consensus 69 ts~~~dm~w~~-~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--~ki~~~~~lslD~~~~~~-~i~vs~s~G~ 144 (339)
T KOG0280|consen 69 TSTEFDMLWRI-RETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--KKISVVEALSLDISTSGT-KIFVSDSRGS 144 (339)
T ss_pred ccccceeeeee-ccCCccceeeeccccceEEEEeeccceeeeeecccch--hhhhheeeeEEEeeccCc-eEEEEcCCCc
Confidence 45577777874 112344 445555555 88888665554444443321 111222 33444447787 7999999999
Q ss_pred EEEEECCCCee--EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec-CC
Q 016185 110 IRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ-TG 186 (394)
Q Consensus 110 i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~-~~ 186 (394)
+.+-+...... +++.+.|+-+++-.+|+..+++++.+|++ |+.+..||++ .+
T Consensus 145 ~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgD-------------------------D~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 145 ISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD-------------------------DGSLSCWDIRIPK 199 (339)
T ss_pred EEEEecceeeeeecccccccceeeeeeecccCCCceEEecCC-------------------------CceEEEEEecCCc
Confidence 99666555533 44888999999999999888899999999 9999999999 34
Q ss_pred cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCC
Q 016185 187 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 266 (394)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (394)
+.+.. ..+-|...|.+|.-+|..+.++++|+.|..|++||.|+-. +|+..-. -.+
T Consensus 200 ~~i~~--n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----------------------kPl~~~~-v~G 254 (339)
T KOG0280|consen 200 TFIWH--NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----------------------KPLFKAK-VGG 254 (339)
T ss_pred ceeee--cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----------------------CccccCc-ccc
Confidence 44333 2226899999999998788999999999999999999732 2222221 125
Q ss_pred ceEEEEEeC---cEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEe-CCCcEE-
Q 016185 267 YVDCNRWLG---DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIF- 341 (394)
Q Consensus 267 ~i~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~- 341 (394)
.|+.+.+.+ ..++.++.-.-.++-+.+..... .......+..|.+-.+.-.|.... ..+++++ .|+.++
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e----~~~~~~s~~~hdSl~YG~DWd~~~--~~lATCsFYDk~~~~ 328 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE----FQIVLPSDKIHDSLCYGGDWDSKD--SFLATCSFYDKKIRQ 328 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcCceEEEecccccc----hheeeeccccccceeecccccccc--ceeeeeeccccceee
Confidence 677777652 22333444444566666554321 111334455566555555553332 3577654 566655
Q ss_pred EEEecCC
Q 016185 342 VWELQSS 348 (394)
Q Consensus 342 iwd~~~~ 348 (394)
+|-.-++
T Consensus 329 ~Wl~~t~ 335 (339)
T KOG0280|consen 329 LWLHITG 335 (339)
T ss_pred eeeeccC
Confidence 6655444
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.2e-12 Score=113.42 Aligned_cols=161 Identities=15% Similarity=0.089 Sum_probs=105.2
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCC---c-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEE
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGN---R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d---~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 103 (394)
.+..|...+.+.+|+| +|+.|+..+.+ . |.+||+.+++.. .+.. ..+.....+|+ |+|+.++++
T Consensus 198 ~lt~~~~~v~~p~wSp----Dg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~-----~~g~~~~~~~S--pDG~~l~~~ 265 (433)
T PRK04922 198 TILRSAEPILSPAWSP----DGKKLAYVSFERGRSAIYVQDLATGQRE-LVAS-----FRGINGAPSFS--PDGRRLALT 265 (433)
T ss_pred EeecCCCccccccCCC----CCCEEEEEecCCCCcEEEEEECCCCCEE-Eecc-----CCCCccCceEC--CCCCEEEEE
Confidence 4556677899999999 78888876532 2 999999877643 2221 12233345666 999844456
Q ss_pred eecCC--eEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEce-eeeEEeeccceeeeeeeccceeeeccCCc--E
Q 016185 104 GGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KVIIISSLSLICLLLFIRSNCLRVGQDES--V 178 (394)
Q Consensus 104 ~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~~i~~~~~~~~~~~~~~~~~~~~~~~d~~--i 178 (394)
.+.+| .|.+||+.+++. ..+..+.......+|+| ++..++..+ . +|. |
T Consensus 266 ~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp-DG~~l~f~sd~-------------------------~g~~~i 318 (433)
T PRK04922 266 LSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP-DGKSIYFTSDR-------------------------GGRPQI 318 (433)
T ss_pred EeCCCCceEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECC-------------------------CCCceE
Confidence 56655 599999987764 44555555567889999 556555444 3 444 6
Q ss_pred EEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC---cEEEEEcccc
Q 016185 179 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEF 232 (394)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~ 232 (394)
.++|+.+++...... +.......+|+| +++.++..+.++ .|.+||+.++
T Consensus 319 y~~dl~~g~~~~lt~----~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 319 YRVAASGGSAERLTF----QGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred EEEECCCCCeEEeec----CCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCC
Confidence 666766665433322 233455789999 888887654433 6899998774
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=1.7e-12 Score=118.07 Aligned_cols=188 Identities=20% Similarity=0.286 Sum_probs=140.2
Q ss_pred ceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecC
Q 016185 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (394)
Q Consensus 49 ~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (394)
.+.....+.+.+.+||...+.....++.- ...--..++-+-.+++.- ++++|+.-+.|.+|++...+.-..+.+|.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~---er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p~~l~GHe 175 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSD---ERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDNKPIRLKGHE 175 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCC---ceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccCCcceecccC
Confidence 34444445555999998887765555521 111112223333334544 99999999999999987443333688999
Q ss_pred CceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEE-EeeccCCCcccEEEEEe
Q 016185 129 DSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICIL-IFAGAGGHRNEVLSVDF 207 (394)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~i~~~~~ 207 (394)
+.|.++.|+. ++.++++.|+ |.++++|++++.+... ..- +|+.+|..++|
T Consensus 176 G~iF~i~~s~-dg~~i~s~Sd-------------------------DRsiRlW~i~s~~~~~~~~f---gHsaRvw~~~~ 226 (967)
T KOG0974|consen 176 GSIFSIVTSL-DGRYIASVSD-------------------------DRSIRLWPIDSREVLGCTGF---GHSARVWACCF 226 (967)
T ss_pred CceEEEEEcc-CCcEEEEEec-------------------------CcceeeeecccccccCcccc---cccceeEEEEe
Confidence 9999999999 8899999999 9999999999987665 333 79999999999
Q ss_pred cCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCC-ceEEEEEe--CcEEEEeecC
Q 016185 208 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVDCNRWL--GDFILSKSVD 284 (394)
Q Consensus 208 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~--~~~l~~~~~d 284 (394)
.| + .+++++.|.+.++|+....+ +..+..|.. .|+.++.. ....++++.|
T Consensus 227 ~~-n--~i~t~gedctcrvW~~~~~~------------------------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~D 279 (967)
T KOG0974|consen 227 LP-N--RIITVGEDCTCRVWGVNGTQ------------------------LEVYDEHSGKGIWKIAVPIGVIIKVTGGND 279 (967)
T ss_pred cc-c--eeEEeccceEEEEEecccce------------------------ehhhhhhhhcceeEEEEcCCceEEEeeccC
Confidence 98 5 89999999999999766522 335555654 47777776 4588899999
Q ss_pred CeEEEecCCCCC
Q 016185 285 NEIVLWEPKMKE 296 (394)
Q Consensus 285 g~i~~~d~~~~~ 296 (394)
+.+++||+....
T Consensus 280 s~lk~~~l~~r~ 291 (967)
T KOG0974|consen 280 STLKLWDLNGRG 291 (967)
T ss_pred cchhhhhhhccc
Confidence 999999987653
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=2.7e-11 Score=103.99 Aligned_cols=206 Identities=17% Similarity=0.137 Sum_probs=150.6
Q ss_pred cEEEEeecCCeEEEEECCCCeeEEEEEe---cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccC
Q 016185 99 PFLVAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQD 175 (394)
Q Consensus 99 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d 175 (394)
.++|....||.+++||...++....+.. -.+...+..|. |.....-.+.-.......+..+...++-|...
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~------L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG------LSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE------EEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 3899999999999999998887777652 23444555553 22221101100111111122223445556669
Q ss_pred CcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccc
Q 016185 176 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 255 (394)
Q Consensus 176 ~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (394)
|.|.+|++..|+....+.. ..|.+.|.++.++. +-..|.+++.|+.+..|+... .
T Consensus 80 g~v~~ys~~~g~it~~~st-~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~-----------------------~ 134 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLST-DKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE-----------------------K 134 (541)
T ss_pred ccEEEEEecCCeEEEEEec-CCCCCcceeeeccc-ccCceEecCCceeEEEEeccc-----------------------c
Confidence 9999999999998887763 26999999999998 888899999999999999998 3
Q ss_pred cceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeec-----CCc
Q 016185 256 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD-----FHY 328 (394)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~ 328 (394)
..+......+..+.++.++ +..+++++ +.|++||+++.+ .+..|.+|.++|.++.|..+ |.
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke---------vv~~ftgh~s~v~t~~f~~~~~g~~G~- 202 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE---------VVITFTGHGSPVRTLSFTTLIDGIIGK- 202 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce---------EEEEecCCCcceEEEEEEEeccccccc-
Confidence 3466677777778888877 44777665 789999999887 89999999999999999988 43
Q ss_pred ceEEEEeCCCcEEEEEecC
Q 016185 329 NAAAIGNREGKIFVWELQS 347 (394)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~ 347 (394)
.+|.+...+.-+.+|-+..
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 3555566677788888765
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=1e-11 Score=97.35 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=80.3
Q ss_pred CCceEEEEEe--CcEEEE--eecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC---C
Q 016185 265 SNYVDCNRWL--GDFILS--KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---E 337 (394)
Q Consensus 265 ~~~i~~~~~~--~~~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---d 337 (394)
.+.|.+++|+ |+.+++ |..+..|.+||++.. .+..+. ...++.+.|+|+| +++++++. .
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~----------~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~ 124 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK----------KIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLN 124 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCccc----------EeEeec--CCCceEEEECCCC--CEEEEEEccCCC
Confidence 3469999998 565543 446789999999732 344443 4567889999999 57777764 4
Q ss_pred CcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEecc------CCeEEEEEcC
Q 016185 338 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE------DGAIWRWDAI 392 (394)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~ 392 (394)
|.|.+||+++. ..+.... | ..++.++|+|||++|+++.. |..++||++.
T Consensus 125 G~l~~wd~~~~--~~i~~~~---~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 125 GDLEFWDVRKK--KKISTFE---H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cEEEEEECCCC--EEeeccc---c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 67999999965 3455444 2 34789999999999998864 7889999975
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=2.3e-11 Score=97.65 Aligned_cols=252 Identities=14% Similarity=0.209 Sum_probs=159.2
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCe-----eEEEEEecC------------CceeEEEEcCCCC-cEE
Q 016185 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHG------------DSINEIRTQPLKP-SLV 144 (394)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~-~~l 144 (394)
.+-|.++.|. ..|. +|++|..+|.|.++.-.... ....++.|. ..|..+.|.++.+ ..+
T Consensus 25 adiis~vef~--~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFD--HYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEee--cccc-eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 3456667766 8899 99999999999999744322 233444553 3678888987433 233
Q ss_pred EEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE-----------------------------------E
Q 016185 145 VSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC-----------------------------------I 189 (394)
Q Consensus 145 ~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-----------------------------------~ 189 (394)
+.... |.+|++|.+..... .
T Consensus 102 LlstN-------------------------dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~pr 156 (433)
T KOG1354|consen 102 LLSTN-------------------------DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPR 156 (433)
T ss_pred EEecC-------------------------CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeee
Confidence 33344 77777777653211 1
Q ss_pred EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecC-----
Q 016185 190 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH----- 264 (394)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 264 (394)
+.+. .+|.--|++|.++. |...++++ .|-.|.+|++.-..+ ..-+..++.+
T Consensus 157 Rv~a--NaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~--------------------sFnIVDIKP~nmEeL 212 (433)
T KOG1354|consen 157 RVYA--NAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQ--------------------SFNIVDIKPANMEEL 212 (433)
T ss_pred eecc--ccceeEeeeeeecC-ccceEeec-cceeeeeccccccCC--------------------ceeEEEccccCHHHH
Confidence 1111 26788899999998 88877776 578899999876221 1112222222
Q ss_pred CCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCC-----CCcce--ecccccCCCCCeEEEEEeecCCcceEEEE
Q 016185 265 SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPG-----EGTAD--ILQKYPVPECDIWFIKFSCDFHYNAAAIG 334 (394)
Q Consensus 265 ~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~-----~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 334 (394)
..-|++..|+ -+.++-.+..|+|++-|++....... ..+.+ ...-+..--..|..+.|+++| +++++-
T Consensus 213 teVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--ryilsR 290 (433)
T KOG1354|consen 213 TEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--RYILSR 290 (433)
T ss_pred HHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--cEEEEe
Confidence 2346666666 56788889999999999995432100 00000 011111223468899999999 677765
Q ss_pred eCCCcEEEEEecCCCceeeEEeccCCcc------------CCe---eEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 335 NREGKIFVWELQSSPPVLIARLSHAQSK------------SPI---RQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------~~v---~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
.. -+|++||+.... ..+..++ -|. ..| ..++|+-++.++++|+....++++++.
T Consensus 291 Dy-ltvk~wD~nme~-~pv~t~~--vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 291 DY-LTVKLWDLNMEA-KPVETYP--VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred cc-ceeEEEeccccC-CcceEEe--ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 53 689999995432 2333333 111 122 347899899999999999999999954
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=7.2e-11 Score=105.74 Aligned_cols=209 Identities=15% Similarity=0.098 Sum_probs=126.0
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC---CeEEEEECCCCeeEEEEEecCCceeEEEE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (394)
|.++|...+. ...+. .+...+...+|+ |+|+ +|+.+..+ ..|++||+.+++... +..+...+.+++|
T Consensus 172 l~~~d~~g~~-~~~l~-----~~~~~~~~p~~S--pdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~ 241 (417)
T TIGR02800 172 LQVADYDGAN-PQTIT-----RSREPILSPAWS--PDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF 241 (417)
T ss_pred EEEEcCCCCC-CEEee-----cCCCceecccCC--CCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 7888865433 34443 244456677777 9999 77765543 479999998875533 3345566778999
Q ss_pred cCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC--cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCee
Q 016185 137 QPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 214 (394)
Q Consensus 137 ~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (394)
+|++..++++.+. ++ .|.+||+.+++..... .+........|+| +++.
T Consensus 242 spDg~~l~~~~~~-------------------------~~~~~i~~~d~~~~~~~~l~----~~~~~~~~~~~s~-dg~~ 291 (417)
T TIGR02800 242 SPDGSKLAVSLSK-------------------------DGNPDIYVMDLDGKQLTRLT----NGPGIDTEPSWSP-DGKS 291 (417)
T ss_pred CCCCCEEEEEECC-------------------------CCCccEEEEECCCCCEEECC----CCCCCCCCEEECC-CCCE
Confidence 9944445555554 44 5888898877654433 2444455678999 8877
Q ss_pred EEeecc-CC--cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCC---e
Q 016185 215 IASCGM-DN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---E 286 (394)
Q Consensus 215 l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg---~ 286 (394)
|+..+. ++ .|.++|+.+.+ ...+..+........|+ +++++.++.++ .
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~------------------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGE------------------------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred EEEEECCCCCceEEEEECCCCC------------------------EEEeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence 765543 34 46667766522 12223334445556665 77888777765 7
Q ss_pred EEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCC---cEEEEEe
Q 016185 287 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWEL 345 (394)
Q Consensus 287 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg---~i~iwd~ 345 (394)
|.+||+.++.. ..+.. . .......|+|+++ .|+..+.++ .+++.+.
T Consensus 348 i~~~d~~~~~~-------~~l~~---~-~~~~~p~~spdg~--~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 348 IAVMDLDGGGE-------RVLTD---T-GLDESPSFAPNGR--MILYATTRGGRGVLGLVST 396 (417)
T ss_pred EEEEeCCCCCe-------EEccC---C-CCCCCceECCCCC--EEEEEEeCCCcEEEEEEEC
Confidence 89999887531 11111 1 1123457999994 555555443 3444443
No 250
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.7e-11 Score=109.10 Aligned_cols=161 Identities=13% Similarity=0.084 Sum_probs=103.3
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCC---c-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEE
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGN---R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d---~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 103 (394)
.+..+...+.+.+|+| +|+.|+..+.+ . |.+||+.+++... +.. ..+.....+|+ |||+.++++
T Consensus 190 ~l~~~~~~v~~p~wSP----DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~-----~~g~~~~~~~S--PDG~~la~~ 257 (427)
T PRK02889 190 SALSSPEPIISPAWSP----DGTKLAYVSFESKKPVVYVHDLATGRRRV-VAN-----FKGSNSAPAWS--PDGRTLAVA 257 (427)
T ss_pred EeccCCCCcccceEcC----CCCEEEEEEccCCCcEEEEEECCCCCEEE-eec-----CCCCccceEEC--CCCCEEEEE
Confidence 3456778899999999 78888776532 2 9999998886533 221 22334456777 999844456
Q ss_pred eecCCeEEEEEC--CCCeeEEEEEecCCceeEEEEcCCCCcEEE-EceeeeEEeeccceeeeeeeccceeeeccCCcEEE
Q 016185 104 GGINGIIRVIDV--SNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKVIIISSLSLICLLLFIRSNCLRVGQDESVRL 180 (394)
Q Consensus 104 ~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 180 (394)
.+.+|...||.+ ..+. ...+..+........|+| ++..++ +... ++...+
T Consensus 258 ~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~-------------------------~g~~~I 310 (427)
T PRK02889 258 LSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDR-------------------------GGAPQI 310 (427)
T ss_pred EccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcC-CCCEEEEEecC-------------------------CCCcEE
Confidence 777887666654 4333 455555555567789999 555554 4434 566667
Q ss_pred EEec--CCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC---cEEEEEcccc
Q 016185 181 WNVQ--TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEF 232 (394)
Q Consensus 181 wd~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~ 232 (394)
|.+. +++...... .........|+| ++++++..+.++ .|.+||+.++
T Consensus 311 y~~~~~~g~~~~lt~----~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 311 YRMPASGGAAQRVTF----TGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EEEECCCCceEEEec----CCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCC
Confidence 7654 443322221 223344678999 888888766554 6999998874
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=3e-09 Score=86.63 Aligned_cols=280 Identities=13% Similarity=0.067 Sum_probs=171.4
Q ss_pred EEEEec---CCcEEEEEcCCCc-eeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec---CCeEEEEECCC--CeeE
Q 016185 51 VFATVG---GNRVTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSN--EKLH 121 (394)
Q Consensus 51 ~las~~---~d~i~vw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~--~~~~ 121 (394)
++.+.. ..+|.+|++.+.. .+..++.. ...+..+-++|. |+++ +|.++.. +|.|..|.++. |+..
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v---~~~~nptyl~~~--~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt 79 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLLQLV---AELGNPTYLAVN--PDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLT 79 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchhhhc---cccCCCceEEEC--CCCC-EEEEEEecCCcCcEEEEEEcCCCCeEE
Confidence 444544 3459999998432 22232221 345566678887 8898 7887754 47788877764 4432
Q ss_pred E--EEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC-CcE---EEEeecc
Q 016185 122 K--SFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT-GIC---ILIFAGA 195 (394)
Q Consensus 122 ~--~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~-~~~---~~~~~~~ 195 (394)
. .......+-..+++++ ++++++++.. ..|.|.++-++. |.. +..+.
T Consensus 80 ~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY------------------------~~g~v~v~p~~~dG~l~~~v~~~~-- 132 (346)
T COG2706 80 FLNRQTLPGSPPCYVSVDE-DGRFVFVANY------------------------HSGSVSVYPLQADGSLQPVVQVVK-- 132 (346)
T ss_pred EeeccccCCCCCeEEEECC-CCCEEEEEEc------------------------cCceEEEEEcccCCccccceeeee--
Confidence 2 1122233447899999 7777777765 167899998865 332 23332
Q ss_pred CCCccc----------EEEEEecCCCCeeEEeecc-CCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecC
Q 016185 196 GGHRNE----------VLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 264 (394)
Q Consensus 196 ~~~~~~----------i~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (394)
|.+. +....+.| +++++++... -..|.+|++..++......... ..
T Consensus 133 --h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--------------------~~ 189 (346)
T COG2706 133 --HTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--------------------KP 189 (346)
T ss_pred --cCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccccc--------------------CC
Confidence 4444 78899999 8888887753 3469999999754322111100 12
Q ss_pred CCceEEEEEe--CcEEEEee-cCCeEEEecCCCCCCCCCCCcceeccc---cc---CCCCCeEEEEEeecCCcceEEEEe
Q 016185 265 SNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQK---YP---VPECDIWFIKFSCDFHYNAAAIGN 335 (394)
Q Consensus 265 ~~~i~~~~~~--~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~---~~---~~~~~i~~~~~~~~~~~~~l~~~~ 335 (394)
...-+-|.|+ +++..... -+++|.+|....... ..+.++. ++ .......+|.++++| ++|.++.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g-----~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG--rFLYasN 262 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG-----KFEELQTIDTLPEDFTGTNWAAAIHISPDG--RFLYASN 262 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc-----eEEEeeeeccCccccCCCCceeEEEECCCC--CEEEEec
Confidence 2233445554 66655544 489999999887411 1112222 11 123457788999999 4666554
Q ss_pred -CCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccC-CeEEEEEcCC
Q 016185 336 -REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-GAIWRWDAIP 393 (394)
Q Consensus 336 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~ 393 (394)
....|-+|.+.....++...-....+........|++.+++|++++.+ ..|.+|.+..
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 345889998887543322222222444568899999999999999865 4588887653
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=7.6e-09 Score=87.50 Aligned_cols=267 Identities=10% Similarity=0.003 Sum_probs=157.6
Q ss_pred CcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee---------cCCeEEEEECCCCeeEEEEEecC
Q 016185 58 NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG---------INGIIRVIDVSNEKLHKSFVGHG 128 (394)
Q Consensus 58 d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~ 128 (394)
+.|.+.|..+++.+..+..-..+ - .+ ++ |||+.+.++.+ .+..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-----~-~~-~s--pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-----N-PV-VA--SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-----c-ee-EC--CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 45999999999988888743221 1 12 44 99994444555 58899999999999998887422
Q ss_pred C-------ceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCccc
Q 016185 129 D-------SINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNE 201 (394)
Q Consensus 129 ~-------~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 201 (394)
. .-..++++| ++++|+.... ..+..|.+.|+.+++.+..+.. ...
T Consensus 98 ~p~~~~~~~~~~~~ls~-dgk~l~V~n~-----------------------~p~~~V~VvD~~~~kvv~ei~v----p~~ 149 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTP-DNKTLLFYQF-----------------------SPSPAVGVVDLEGKAFVRMMDV----PDC 149 (352)
T ss_pred CchhhccCccceEEECC-CCCEEEEecC-----------------------CCCCEEEEEECCCCcEEEEEeC----CCC
Confidence 2 234788999 6666664442 0178999999999999998873 222
Q ss_pred EEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeec-----CCCceEEEEE-eC
Q 016185 202 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-----HSNYVDCNRW-LG 275 (394)
Q Consensus 202 i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~-~~ 275 (394)
..-...++ +. +..-+.||......+.........+ .++ +.. ...+ .... ++
T Consensus 150 ~~vy~t~e-~~--~~~~~~Dg~~~~v~~d~~g~~~~~~----------------~~v--f~~~~~~v~~rP--~~~~~dg 206 (352)
T TIGR02658 150 YHIFPTAN-DT--FFMHCRDGSLAKVGYGTKGNPKIKP----------------TEV--FHPEDEYLINHP--AYSNKSG 206 (352)
T ss_pred cEEEEecC-Cc--cEEEeecCceEEEEecCCCceEEee----------------eee--ecCCccccccCC--ceEcCCC
Confidence 22222222 22 2233456665555444411100000 000 000 0111 1111 26
Q ss_pred cEEEEeecCCeEEEecCCCCCCCCCCCcceecccc----cCCCCCeEEEEEeecCCcceEEEEe----------CCCcEE
Q 016185 276 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAAAIGN----------REGKIF 341 (394)
Q Consensus 276 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~----------~dg~i~ 341 (394)
.++..... |.|.+.|+...+..... ....+..- ........-++++++++ .+++.. ..+.|.
T Consensus 207 ~~~~vs~e-G~V~~id~~~~~~~~~~-~~~~~~~~~~~~~wrP~g~q~ia~~~dg~--~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 207 RLVWPTYT-GKIFQIDLSSGDAKFLP-AIEAFTEAEKADGWRPGGWQQVAYHRARD--RIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred cEEEEecC-CeEEEEecCCCcceecc-eeeeccccccccccCCCcceeEEEcCCCC--EEEEEecCCccccccCCCCEEE
Confidence 66666554 99999997654321110 00111000 11233444599999995 444421 225799
Q ss_pred EEEecCCCceeeEEeccCCccCCeeEEEeccCCC-EEEEec-cCCeEEEEEcCC
Q 016185 342 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCC-EDGAIWRWDAIP 393 (394)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iwd~~~ 393 (394)
++|..+.+ .+.++... ..+..++++||++ +|++.. .++.|.+.|+.+
T Consensus 283 ViD~~t~k--vi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 283 VVDAKTGK--RLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEECCCCe--EEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 99988874 55555522 5788999999999 888666 678899999864
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=3.2e-12 Score=122.41 Aligned_cols=214 Identities=12% Similarity=0.276 Sum_probs=165.8
Q ss_pred EEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEE
Q 016185 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRL 180 (394)
Q Consensus 101 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 180 (394)
......++...-|..+-+. ..++.+-..|.++.-+| ...+.++|+. ||.+++
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~--~~~k~~v~~v~r~~sHp-~~~~Yltgs~-------------------------dgsv~~ 2234 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGAS--VMIKHPVENVRRMTSHP-SDPYYLTGSQ-------------------------DGSVRM 2234 (2439)
T ss_pred CCcccCCccccceecccce--eEeecccCceeeecCCC-CCceEEecCC-------------------------CceEEE
Confidence 3444445555555533222 22344566788888888 5567788888 999999
Q ss_pred EEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceee
Q 016185 181 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 260 (394)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (394)
|....++.+..++.. .+..|+.+.|+. .|+.+..+..||.+.+|.... ++...
T Consensus 2235 ~~w~~~~~v~~~rt~--g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p------------------------k~~~s 2287 (2439)
T KOG1064|consen 2235 FEWGHGQQVVCFRTA--GNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP------------------------KPYTS 2287 (2439)
T ss_pred EeccCCCeEEEeecc--Ccchhhhhhhcc-cCCceeeeccCCceeecccCC------------------------cceec
Confidence 999999988888853 348999999998 888899999999999999874 35778
Q ss_pred eecCCCceEEEEEeCcEEEEeec---CCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCC
Q 016185 261 ASVHSNYVDCNRWLGDFILSKSV---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 337 (394)
Q Consensus 261 ~~~~~~~i~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 337 (394)
.+.|........|-+..+++++. ++.+.+||..-... ...+. ..|...++++++.|.. .+|++|+.+
T Consensus 2288 ~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~------~s~v~--~~H~~gaT~l~~~P~~--qllisggr~ 2357 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPM------NSLVH--TCHDGGATVLAYAPKH--QLLISGGRK 2357 (2439)
T ss_pred cccCCccccceeeeehhhhccccCCCCCcccchhcccCcc------cceee--eecCCCceEEEEcCcc--eEEEecCCc
Confidence 88899999999998888887764 78899999765431 11233 7788999999999999 599999999
Q ss_pred CcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 338 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
|.|++||++..+ +...++ . ++ ...++++|+..|.|+||++..
T Consensus 2358 G~v~l~D~rqrq--l~h~~~--~---------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQ--LRHTFQ--A---------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred CcEEEeehHHHH--HHHHhh--h---------hh-hhheeeccCcccceEEEEccc
Confidence 999999998763 444444 1 44 567999999999999999864
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=1.5e-10 Score=103.70 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=130.3
Q ss_pred CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
..|.++|.. +...+.+..+...+...+|+| +++.|+.... .+....|++||+.+++
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~----------------------~~~~~~i~v~d~~~g~ 225 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSP-DGQKLAYVSF----------------------ESGKPEIYVQDLATGQ 225 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCC-CCCEEEEEEc----------------------CCCCcEEEEEECCCCC
Confidence 368888875 344455656767788999999 6666665543 0012579999998886
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEE-eeccCC--cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecC
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 264 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (394)
...... +...+.+++|+| +++.|+ +.+.++ .|++||+.+++. ..+..+
T Consensus 226 ~~~~~~----~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~------------------------~~l~~~ 276 (417)
T TIGR02800 226 REKVAS----FPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQL------------------------TRLTNG 276 (417)
T ss_pred EEEeec----CCCCccceEECC-CCCEEEEEECCCCCccEEEEECCCCCE------------------------EECCCC
Confidence 554332 555667799999 776554 555544 588888876321 112222
Q ss_pred CCceEEEEEe--CcEEEEeec-CC--eEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCC-
Q 016185 265 SNYVDCNRWL--GDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG- 338 (394)
Q Consensus 265 ~~~i~~~~~~--~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg- 338 (394)
........|+ ++.|+..+. ++ .|.++|+.+++ ...+..+........|+|++ .+++.++.++
T Consensus 277 ~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----------~~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~ 344 (417)
T TIGR02800 277 PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----------VRRLTFRGGYNASPSWSPDG--DLIAFVHREGG 344 (417)
T ss_pred CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----------EEEeecCCCCccCeEECCCC--CEEEEEEccCC
Confidence 2223334554 666665543 33 57778877553 12222233445678899999 5677766665
Q ss_pred --cEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCC---eEEEEEc
Q 016185 339 --KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG---AIWRWDA 391 (394)
Q Consensus 339 --~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~ 391 (394)
.|.+||+.++.. ..+... .......|+||+++|+..+.++ .+++.+.
T Consensus 345 ~~~i~~~d~~~~~~---~~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 345 GFNIAVMDLDGGGE---RVLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ceEEEEEeCCCCCe---EEccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 788888877542 223211 1234568999999988877654 3555543
No 255
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.9e-11 Score=108.10 Aligned_cols=265 Identities=14% Similarity=0.147 Sum_probs=183.0
Q ss_pred cceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcC--------C-CCcEEEEe
Q 016185 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV--------D-GIPFLVAG 104 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~-~~~~l~s~ 104 (394)
..-.++.|+| +.++|-|+..-|.|-|..+-+.++.+. .|...|..+.|++.| . ...+||++
T Consensus 16 sN~~A~Dw~~-----~GLiAygshslV~VVDs~s~q~iqsie-----~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa 85 (1062)
T KOG1912|consen 16 SNRNAADWSP-----SGLIAYGSHSLVSVVDSRSLQLIQSIE-----LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA 85 (1062)
T ss_pred ccccccccCc-----cceEEEecCceEEEEehhhhhhhhccc-----cCccceeEEEeccCCCchhccCccccceeEEec
Confidence 3467788998 678999998889999998888888887 677899999998532 1 34478888
Q ss_pred ecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCC--CC-cEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEE
Q 016185 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL--KP-SLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLW 181 (394)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw 181 (394)
...|.|.+||...+..+..+..|.+++..++|-+. +. .+|+.-.. ..++.+|
T Consensus 86 D~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~-------------------------ss~lvLw 140 (1062)
T KOG1912|consen 86 DISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG-------------------------SSTLVLW 140 (1062)
T ss_pred cccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC-------------------------CcEEEEE
Confidence 89999999999999888889999999999999752 22 45555555 7899999
Q ss_pred EecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeec--cccccCCCCCCCCcccccccee
Q 016185 182 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE--KSFTWTDLPSKFPTKYVQFPVF 259 (394)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 259 (394)
+..+|+...... .......|+.++|-+.+.+..-+..|.+.+.+.-....... +.++....-..... ......
T Consensus 141 ntdtG~k~Wk~~---ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~--lere~a 215 (1062)
T KOG1912|consen 141 NTDTGEKFWKYD---YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH--LERETA 215 (1062)
T ss_pred EccCCceeeccc---cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh--hhhhhh
Confidence 999999988776 44566777999998888888888888888877654221110 00000000000000 000000
Q ss_pred eeecCCCc-------eEE--EEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCc
Q 016185 260 IASVHSNY-------VDC--NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 328 (394)
Q Consensus 260 ~~~~~~~~-------i~~--~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 328 (394)
.-..+... ..| ++|+ -+.++.......+.++|++-.. .+.......+.+..+.+-|+++.
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~---------~l~vvpier~~akfv~vlP~~~r 286 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC---------CLAVVPIERGGAKFVDVLPDPRR 286 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc---------eeEEEEeccCCcceeEeccCCCc
Confidence 00001000 011 2223 2234444567889999998554 56666777777888899999887
Q ss_pred ceEEEEeCCCcEEEEEecC
Q 016185 329 NAAAIGNREGKIFVWELQS 347 (394)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~ 347 (394)
..|++.-.||.+.+|--+.
T Consensus 287 d~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 287 DALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEEecCCeEEEEEeec
Confidence 8999999999999997665
No 256
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.39 E-value=3.2e-10 Score=95.82 Aligned_cols=281 Identities=13% Similarity=0.088 Sum_probs=181.0
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
.+..-.-++..+.||| .|.+|++....+|.+|.-.....+..+. ...|..+.|+ |+++ +|.+-+..
T Consensus 27 ~~~~~~~p~~~~~~SP----~G~~l~~~~~~~V~~~~g~~~~~l~~~~-------~~~V~~~~fS--P~~k-YL~tw~~~ 92 (561)
T COG5354 27 RFESENWPVAYVSESP----LGTYLFSEHAAGVECWGGPSKAKLVRFR-------HPDVKYLDFS--PNEK-YLVTWSRE 92 (561)
T ss_pred cccccCcchhheeecC----cchheehhhccceEEccccchhheeeee-------cCCceecccC--cccc-eeeeeccC
Confidence 3344567899999999 8999999999999999977766555444 2356667777 9999 99987654
Q ss_pred C---------------eEEEEECCCCeeEEEEEecCCc--ee-EEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccce
Q 016185 108 G---------------IIRVIDVSNEKLHKSFVGHGDS--IN-EIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNC 169 (394)
Q Consensus 108 g---------------~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~ 169 (394)
+ .+.+||..++..+..+..-..+ .+ -+.|+- +..+++--.
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARvv--------------------- 150 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARVV--------------------- 150 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhhc---------------------
Confidence 4 4999999999999999876555 44 677887 444444332
Q ss_pred eeeccCCcEEEEEecCCcE-EEEeeccCCCcccEEEEEecCC-CCeeEEe-----eccCCcEEEEEccccceeecccccc
Q 016185 170 LRVGQDESVRLWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPS-DIYRIAS-----CGMDNTVKIWSMKEFWTYVEKSFTW 242 (394)
Q Consensus 170 ~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~ 242 (394)
...++|+++ ++.. ...+.. -....|....|+|. ++..|+. .+..+.+++|.+.....
T Consensus 151 -----~~sl~i~e~-t~n~~~~p~~~--lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~-------- 214 (561)
T COG5354 151 -----GSSLYIHEI-TDNIEEHPFKN--LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV-------- 214 (561)
T ss_pred -----cCeEEEEec-CCccccCchhh--ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe--------
Confidence 457899997 3332 222221 12367888899983 3333443 45678899998876322
Q ss_pred CCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEee-----------cCCeEEEecCCCCCCCCCCCcceeccc
Q 016185 243 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-----------VDNEIVLWEPKMKEQSPGEGTADILQK 309 (394)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-----------~dg~i~~~d~~~~~~~~~~~~~~~~~~ 309 (394)
+.....-...=..+.|. |++++.-. ....+.++++.... +..
T Consensus 215 ---------------l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~----------i~V 269 (561)
T COG5354 215 ---------------LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS----------IPV 269 (561)
T ss_pred ---------------eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc----------cce
Confidence 11111111111223333 44333211 13567888877432 222
Q ss_pred ccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccC---CeE
Q 016185 310 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED---GAI 386 (394)
Q Consensus 310 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i 386 (394)
.....++|...+|.|.+..--+++|-.+-.+.++|++.+ ....++ ...=+.+.|+|.+++++.++-| |.+
T Consensus 270 ~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~P----e~~rNT~~fsp~~r~il~agF~nl~gni 342 (561)
T COG5354 270 EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFP----EQKRNTIFFSPHERYILFAGFDNLQGNI 342 (561)
T ss_pred eccccccceeeeecccCCceeEEecccccceeecccccc---eEEecC----CcccccccccCcccEEEEecCCccccce
Confidence 224467899999999986444556678899999999876 333333 2345567889988888887654 568
Q ss_pred EEEEcC
Q 016185 387 WRWDAI 392 (394)
Q Consensus 387 ~iwd~~ 392 (394)
-+||..
T Consensus 343 ~i~~~~ 348 (561)
T COG5354 343 EIFDPA 348 (561)
T ss_pred EEeccC
Confidence 888754
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=1.1e-11 Score=118.98 Aligned_cols=196 Identities=12% Similarity=0.159 Sum_probs=149.6
Q ss_pred ccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCC
Q 016185 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (394)
Q Consensus 30 ~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg 108 (394)
+.|-..|.++.=+| ...+.+||+.|+ |++|....++++..++.. +. ..|+.+.|+ ..|. -...+..||
T Consensus 2205 k~~v~~v~r~~sHp----~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~---g~-s~vtr~~f~--~qGn-k~~i~d~dg 2273 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHP----SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA---GN-SRVTRSRFN--HQGN-KFGIVDGDG 2273 (2439)
T ss_pred ecccCceeeecCCC----CCceEEecCCCceEEEEeccCCCeEEEeecc---Cc-chhhhhhhc--ccCC-ceeeeccCC
Confidence 44556788888888 456888888888 999999988887777643 22 667777776 7787 788889999
Q ss_pred eEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE
Q 016185 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC 188 (394)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 188 (394)
.+.+|.+. .++....+.|.....++.|-. ..+++++. ...++.+.+||..-...
T Consensus 2274 ~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~----------------------s~d~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2274 DLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGR----------------------SSDNRNVCLWDTLLPPM 2327 (2439)
T ss_pred ceeecccC-CcceeccccCCccccceeeee---hhhhcccc----------------------CCCCCcccchhcccCcc
Confidence 99999976 677788889999999999975 66776654 12378999999653322
Q ss_pred EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCce
Q 016185 189 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 268 (394)
Q Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 268 (394)
...+. ..|.+.++++++.| ...+|++|+.+|.|++||++..+. +..++.
T Consensus 2328 ~s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql-----------------------~h~~~~----- 2376 (2439)
T KOG1064|consen 2328 NSLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQL-----------------------RHTFQA----- 2376 (2439)
T ss_pred cceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHH-----------------------HHHhhh-----
Confidence 11111 16999999999999 999999999999999999998432 222221
Q ss_pred EEEEEeCcEEEEeecCCeEEEecCCCCC
Q 016185 269 DCNRWLGDFILSKSVDNEIVLWEPKMKE 296 (394)
Q Consensus 269 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 296 (394)
+. ...++++++..|.|+||++....
T Consensus 2377 --~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred --hh-hhheeeccCcccceEEEEccccc
Confidence 11 17799999999999999998764
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.2e-10 Score=102.49 Aligned_cols=289 Identities=12% Similarity=0.078 Sum_probs=185.8
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEee----------ecccCCcccceEEEEEEEcCCCCcEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQ----------SYVDEDKEESFYTVSWACNVDGIPFL 101 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (394)
.....|++|+. ...++|.|+.|+ ++|..+.+...-.... .....+|.+.|..+.|. .+.+ -|
T Consensus 14 nvkL~c~~WNk----e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN--e~~Q-KL 86 (1189)
T KOG2041|consen 14 NVKLHCAEWNK----ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN--ENNQ-KL 86 (1189)
T ss_pred CceEEEEEEcc----cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec--cccc-cc
Confidence 45689999997 688999999999 8888876532211111 11234899999999997 5565 89
Q ss_pred EEeecCCeEEEEECCCCeeEEEEE--ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 102 VAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 102 ~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
-+...+|.|.||-+-.+.-...+. ...+.|.+++|+. ++..+...-. ||.|.
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYe-------------------------DGavI 140 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYE-------------------------DGAVI 140 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEc-------------------------cCCEE
Confidence 999999999999987775433322 3456789999999 7777777777 66666
Q ss_pred EEEecCCcEE-EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccce---eeccccccCCCCCCCCccccc
Q 016185 180 LWNVQTGICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT---YVEKSFTWTDLPSKFPTKYVQ 255 (394)
Q Consensus 180 vwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 255 (394)
|=.++..+.- +.++ ..-...+.|++ |...++.+-.+|.+.+||....-. .....+....
T Consensus 141 VGsvdGNRIwgKeLk-----g~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg----------- 203 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKELK-----GQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG----------- 203 (1189)
T ss_pred EEeeccceecchhcc-----hheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeee-----------
Confidence 6555432211 1111 12234688999 888888888999999999876211 1111111111
Q ss_pred cceeeeecCCCceEEEEEe----------CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeec
Q 016185 256 FPVFIASVHSNYVDCNRWL----------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 325 (394)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~----------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (394)
.+...+..|..+.|. -..++.+-..|.+.+..-.+...+ .+. ...-.+..+.|+++
T Consensus 204 ----~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-------vv~---dtgm~~vgakWnh~ 269 (1189)
T KOG2041|consen 204 ----IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP-------VVV---DTGMKIVGAKWNHN 269 (1189)
T ss_pred ----eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC-------eEE---ecccEeecceecCC
Confidence 111112224444443 237888888888888665544321 111 11245778899999
Q ss_pred CCcceEEEEeCC---------CcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 326 FHYNAAAIGNRE---------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 326 ~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
| ..|+.++.+ +.|.+|..-. ..+..++ .....|++++|-..|-.+|.+ .|+.|++=++++
T Consensus 270 G--~vLAvcG~~~da~~~~d~n~v~Fysp~G---~i~gtlk--vpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 270 G--AVLAVCGNDSDADEPTDSNKVHFYSPYG---HIVGTLK--VPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred C--cEEEEccCcccccCccccceEEEeccch---hheEEEe--cCCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 9 688887754 2455554432 2455666 344789999998777777766 577787777665
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.34 E-value=2.5e-10 Score=91.79 Aligned_cols=243 Identities=9% Similarity=0.122 Sum_probs=171.0
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECC-CCeeEEEEE-ecCCceeEEEEcCCCCcEEEEceeeeEEeeccc
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKVIIISSLSL 158 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~ 158 (394)
++.+.++....- |... -+++.+.|.+++||--. .++.-..+. ....+++++.+.+ +...|+.|-.
T Consensus 22 G~~d~vn~~~l~--~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~--------- 88 (404)
T KOG1409|consen 22 GSQDDVNAAILI--PKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQD--------- 88 (404)
T ss_pred Cchhhhhhheec--cCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEe---------
Confidence 566667766655 5444 69999999999999643 444444443 2346788999998 7788888888
Q ss_pred eeeeeeeccceeeeccCCcEEEEEec----CCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccce
Q 016185 159 ICLLLFIRSNCLRVGQDESVRLWNVQ----TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 234 (394)
.|++.-+.+. ....++.+. .|..++..+-|+. ...++++.+.|..+.---.+.+..
T Consensus 89 ----------------ngtvtefs~sedfnkm~~~r~~~---~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~ 148 (404)
T KOG1409|consen 89 ----------------NGTVTEFALSEDFNKMTFLKDYL---AHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNR 148 (404)
T ss_pred ----------------cceEEEEEhhhhhhhcchhhhhh---hhhcceeeEEecC-CceeEEEeccccceEEEeeccCCc
Confidence 8999888654 233444444 7999999999998 888999999987765544444221
Q ss_pred eeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCC
Q 016185 235 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE 314 (394)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 314 (394)
.. -..+. ..-.++.++=.+...|...|.|.+-.+.... ...+.++.+|.
T Consensus 149 lg---------------------~Y~~~---~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~-------~~~i~~~~~h~ 197 (404)
T KOG1409|consen 149 LG---------------------GYNFE---TPASALQFDALYAFVGDHSGQITMLKLEQNG-------CQLITTFNGHT 197 (404)
T ss_pred cc---------------------ceEee---ccCCCCceeeEEEEecccccceEEEEEeecC-------CceEEEEcCcc
Confidence 00 00000 0111112221145555556666555544332 22678889999
Q ss_pred CCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 315 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 315 ~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
..+.+++|.+.. ..|.+|..|..+.+||+...+. ....+. +|...|..+..-+--+.|.+++.||.|.+||.+
T Consensus 198 ~~~~~l~Wd~~~--~~LfSg~~d~~vi~wdigg~~g-~~~el~--gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 198 GEVTCLKWDPGQ--RLLFSGASDHSVIMWDIGGRKG-TAYELQ--GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cceEEEEEcCCC--cEEEeccccCceEEEeccCCcc-eeeeec--cchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 999999999998 6999999999999999987642 344444 888999999988888999999999999999975
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=1.2e-08 Score=85.89 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=114.2
Q ss_pred cceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCC-eEEEEECCCCeeEEEEEe
Q 016185 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING-IIRVIDVSNEKLHKSFVG 126 (394)
Q Consensus 48 ~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~ 126 (394)
+|+++|..+.++..|.+...+-.++. ++.+.|.-..+. .+++ -++.|..|| .+-|+|..+++. ..+..
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv-------~~~~~VrY~r~~--~~~e-~~vigt~dgD~l~iyd~~~~e~-kr~e~ 399 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV-------GKKGGVRYRRIQ--VDPE-GDVIGTNDGDKLGIYDKDGGEV-KRIEK 399 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc-------CCCCceEEEEEc--cCCc-ceEEeccCCceEEEEecCCceE-EEeeC
Confidence 58999999999988888666654333 355667777777 5555 688888888 899999876654 45555
Q ss_pred cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEE
Q 016185 127 HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 206 (394)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 206 (394)
.-+.|.++..+| ++..++.+.. ...|.+.|+++|+....-+ ...+-|+.++
T Consensus 400 ~lg~I~av~vs~-dGK~~vvaNd-------------------------r~el~vididngnv~~idk---S~~~lItdf~ 450 (668)
T COG4946 400 DLGNIEAVKVSP-DGKKVVVAND-------------------------RFELWVIDIDNGNVRLIDK---SEYGLITDFD 450 (668)
T ss_pred CccceEEEEEcC-CCcEEEEEcC-------------------------ceEEEEEEecCCCeeEecc---cccceeEEEE
Confidence 678899999999 7788888887 8899999999998765544 4667899999
Q ss_pred ecCCCCeeEEeeccCC----cEEEEEccccce
Q 016185 207 FHPSDIYRIASCGMDN----TVKIWSMKEFWT 234 (394)
Q Consensus 207 ~~~~~~~~l~s~~~dg----~v~iwd~~~~~~ 234 (394)
|+| ++++++-+--+| .|+++|+..++.
T Consensus 451 ~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 451 WHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence 999 999998776554 689999988654
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.2e-09 Score=98.09 Aligned_cols=233 Identities=11% Similarity=0.033 Sum_probs=130.9
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC---CeEEEEECCCCeeEEEEEecCCceeEEEE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (394)
|.++|...+.. ..+. .+...+...+|+ |||+ .|+..+.+ ..|.+||+.+++... +....+.+....|
T Consensus 181 l~~~d~~g~~~-~~l~-----~~~~~~~~p~wS--pDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~ 250 (430)
T PRK00178 181 LQRSDYDGARA-VTLL-----QSREPILSPRWS--PDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAW 250 (430)
T ss_pred EEEECCCCCCc-eEEe-----cCCCceeeeeEC--CCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEE
Confidence 77777654443 3343 245567777888 9998 66654432 468999998876533 3333445567899
Q ss_pred cCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC--cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCee
Q 016185 137 QPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 214 (394)
Q Consensus 137 ~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (394)
+|++..++++.+. ++ .|.+||+.+++... +. .+........|+| +++.
T Consensus 251 SpDG~~la~~~~~-------------------------~g~~~Iy~~d~~~~~~~~-lt---~~~~~~~~~~~sp-Dg~~ 300 (430)
T PRK00178 251 SPDGSKLAFVLSK-------------------------DGNPEIYVMDLASRQLSR-VT---NHPAIDTEPFWGK-DGRT 300 (430)
T ss_pred CCCCCEEEEEEcc-------------------------CCCceEEEEECCCCCeEE-cc---cCCCCcCCeEECC-CCCE
Confidence 9944444445554 44 68888998776544 33 3445566788999 7776
Q ss_pred EEeec-cCC--cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeec-CC--e
Q 016185 215 IASCG-MDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DN--E 286 (394)
Q Consensus 215 l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-dg--~ 286 (394)
++..+ .+| .|.++|+.+++. ..+...........|+ |+.++..+. ++ .
T Consensus 301 i~f~s~~~g~~~iy~~d~~~g~~------------------------~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 301 LYFTSDRGGKPQIYKVNVNGGRA------------------------ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred EEEEECCCCCceEEEEECCCCCE------------------------EEeecCCCCccceEECCCCCEEEEEEccCCceE
Confidence 65544 344 466667655321 0111111111223444 667766554 33 5
Q ss_pred EEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCC--cEEEEEecCCCceeeEEeccCCccCC
Q 016185 287 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQSKSP 364 (394)
Q Consensus 287 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (394)
|.+||+.+++. ..+.... ......|+|+++ .++++...++ .|.++++... ....+. .+.+.
T Consensus 357 l~~~dl~tg~~-------~~lt~~~----~~~~p~~spdg~-~i~~~~~~~g~~~l~~~~~~g~---~~~~l~--~~~g~ 419 (430)
T PRK00178 357 VAAQDLQRGSV-------RILTDTS----LDESPSVAPNGT-MLIYATRQQGRGVLMLVSINGR---VRLPLP--TAQGE 419 (430)
T ss_pred EEEEECCCCCE-------EEccCCC----CCCCceECCCCC-EEEEEEecCCceEEEEEECCCC---ceEECc--CCCCC
Confidence 88899887642 1121111 112457999995 2334443344 4566666443 233444 33456
Q ss_pred eeEEEeccC
Q 016185 365 IRQTAMSYD 373 (394)
Q Consensus 365 v~~~~~s~~ 373 (394)
+...+|+|-
T Consensus 420 ~~~p~ws~~ 428 (430)
T PRK00178 420 VREPSWSPY 428 (430)
T ss_pred cCCCccCCC
Confidence 677788763
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=7.1e-08 Score=83.58 Aligned_cols=269 Identities=14% Similarity=0.135 Sum_probs=153.8
Q ss_pred cccccceeeeeccCccceeEEEEEeeCCCcceEEEEecC----Cc-EEEEEcCCC-ceeEEeeecccCCcccceEEEEEE
Q 016185 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG----NR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWA 92 (394)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~----d~-i~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 92 (394)
....+.....+. -.....-++++| ++++|.+... ++ |..|++... ..+..+..... ....-..++
T Consensus 23 ~~g~l~~~~~~~-~~~~Ps~l~~~~----~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~g~~p~~i~-- 93 (345)
T PF10282_consen 23 ETGTLTLVQTVA-EGENPSWLAVSP----DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--GGSSPCHIA-- 93 (345)
T ss_dssp TTTEEEEEEEEE-ESSSECCEEE-T----TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--SSSCEEEEE--
T ss_pred CCCCceEeeeec-CCCCCceEEEEe----CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--CCCCcEEEE--
Confidence 334444444432 234456688888 5677777655 23 888888765 44444443221 122223344
Q ss_pred EcCCCCcEEEEee-cCCeEEEEECCC-CeeEEE--EEec-----------CCceeEEEEcCCCCcEEEEceeeeEEeecc
Q 016185 93 CNVDGIPFLVAGG-INGIIRVIDVSN-EKLHKS--FVGH-----------GDSINEIRTQPLKPSLVVSASKVIIISSLS 157 (394)
Q Consensus 93 ~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~--~~~~-----------~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~ 157 (394)
.+|+++ +|+++. .+|.|.++++.. ++.... ...| .....++.|+| +++++++...
T Consensus 94 ~~~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dl-------- 163 (345)
T PF10282_consen 94 VDPDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDL-------- 163 (345)
T ss_dssp ECTTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEET--------
T ss_pred EecCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEec--------
Confidence 449999 666654 689999999986 443322 1111 23467899999 5565555432
Q ss_pred ceeeeeeeccceeeeccCCcEEEEEecCCc--EE--EEeeccCCCcccEEEEEecCCCCeeE-EeeccCCcEEEEEcccc
Q 016185 158 LICLLLFIRSNCLRVGQDESVRLWNVQTGI--CI--LIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEF 232 (394)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~--~~--~~~~~~~~~~~~i~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~ 232 (394)
....|.+|++.... .. ..+.. ......+.++|+| +++++ ++...++.|.++++...
T Consensus 164 ----------------G~D~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 164 ----------------GADRVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp ----------------TTTEEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETT
T ss_pred ----------------CCCEEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeeccc
Confidence 15589999997655 32 22221 3456788999999 66555 55667889999999831
Q ss_pred ceeeccccccCCCCCCCCccccccceeeee--c-CCCceEEEEEe--CcEEEEee-cCCeEEEecCCCCCCCCCCCccee
Q 016185 233 WTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--V-HSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADI 306 (394)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~~~~~~--~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~ 306 (394)
....... ..+..+. . .......|.++ |++|+++. ..+.|.+|++..... ....
T Consensus 225 ~g~~~~~----------------~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-----~l~~ 283 (345)
T PF10282_consen 225 DGSLTEI----------------QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-----TLTL 283 (345)
T ss_dssp TTEEEEE----------------EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-----TEEE
T ss_pred CCceeEE----------------EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-----ceEE
Confidence 1111000 0011110 0 11245666676 77666554 578899999943211 2224
Q ss_pred cccccCCCCCeEEEEEeecCCcceEEEEe-CCCcEEEEEecCC
Q 016185 307 LQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSS 348 (394)
Q Consensus 307 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 348 (394)
+............++++|+++ +|+++. .++.|.+|++...
T Consensus 284 ~~~~~~~G~~Pr~~~~s~~g~--~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 284 VQTVPTGGKFPRHFAFSPDGR--YLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEEEEESSSSEEEEEE-TTSS--EEEEEETTTTEEEEEEEETT
T ss_pred EEEEeCCCCCccEEEEeCCCC--EEEEEecCCCeEEEEEEeCC
Confidence 444444444578999999994 566554 6789999988643
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.6e-09 Score=96.95 Aligned_cols=232 Identities=14% Similarity=0.061 Sum_probs=127.6
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee-cCC--eEEEEECCCCeeEEEEEecCCceeEEEE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-ING--IIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (394)
+.++|...... +.+. .....+....|+ |||+ .|+..+ .++ .|.+||+.+++... +....+......|
T Consensus 200 l~i~d~dG~~~-~~l~-----~~~~~~~~p~wS--PDG~-~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~w 269 (448)
T PRK04792 200 LMIADYDGYNE-QMLL-----RSPEPLMSPAWS--PDGR-KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRF 269 (448)
T ss_pred EEEEeCCCCCc-eEee-----cCCCcccCceEC--CCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeE
Confidence 66677544433 3333 234566677887 9999 666543 333 58889988776432 3222334457899
Q ss_pred cCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCc--EEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCee
Q 016185 137 QPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDES--VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 214 (394)
Q Consensus 137 ~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (394)
+|++..++++.+. ++. |.++|+.+++... +. .+.......+|+| +++.
T Consensus 270 SPDG~~La~~~~~-------------------------~g~~~Iy~~dl~tg~~~~-lt---~~~~~~~~p~wSp-DG~~ 319 (448)
T PRK04792 270 SPDGKKLALVLSK-------------------------DGQPEIYVVDIATKALTR-IT---RHRAIDTEPSWHP-DGKS 319 (448)
T ss_pred CCCCCEEEEEEeC-------------------------CCCeEEEEEECCCCCeEE-Cc---cCCCCccceEECC-CCCE
Confidence 9954445555555 664 7777887776543 33 3445567789999 7776
Q ss_pred EEeec-cCCc--EEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeec-CC--e
Q 016185 215 IASCG-MDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DN--E 286 (394)
Q Consensus 215 l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-dg--~ 286 (394)
|+..+ .++. |.++|+.+++. ..+...........|+ |++++..+. ++ .
T Consensus 320 I~f~s~~~g~~~Iy~~dl~~g~~------------------------~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 320 LIFTSERGGKPQIYRVNLASGKV------------------------SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred EEEEECCCCCceEEEEECCCCCE------------------------EEEecCCCCCcCeeECCCCCEEEEEEecCCceE
Confidence 65544 3444 55556655321 1111111112233454 666665544 34 4
Q ss_pred EEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCc--EEEEEecCCCceeeEEeccCCccCC
Q 016185 287 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK--IFVWELQSSPPVLIARLSHAQSKSP 364 (394)
Q Consensus 287 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (394)
|.++|+.+++. ..+.... ......|+|+++ .++++...++. +++++.... ....+. .+.+.
T Consensus 376 I~~~dl~~g~~-------~~lt~~~----~d~~ps~spdG~-~I~~~~~~~g~~~l~~~~~~G~---~~~~l~--~~~g~ 438 (448)
T PRK04792 376 IARQDLETGAM-------QVLTSTR----LDESPSVAPNGT-MVIYSTTYQGKQVLAAVSIDGR---FKARLP--AGQGE 438 (448)
T ss_pred EEEEECCCCCe-------EEccCCC----CCCCceECCCCC-EEEEEEecCCceEEEEEECCCC---ceEECc--CCCCC
Confidence 56677776642 1111111 111347999995 23444444444 666676433 344444 33456
Q ss_pred eeEEEecc
Q 016185 365 IRQTAMSY 372 (394)
Q Consensus 365 v~~~~~s~ 372 (394)
+...+|+|
T Consensus 439 ~~~p~Wsp 446 (448)
T PRK04792 439 VKSPAWSP 446 (448)
T ss_pred cCCCccCC
Confidence 77788887
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.33 E-value=1.2e-08 Score=99.98 Aligned_cols=267 Identities=13% Similarity=0.129 Sum_probs=155.0
Q ss_pred eEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCC---------cccceEEEEEEEcCCCCcEEEEeec
Q 016185 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED---------KEESFYTVSWACNVDGIPFLVAGGI 106 (394)
Q Consensus 37 ~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~l~s~~~ 106 (394)
..+++++. +++++++-..++ |.++|.. +..+..+......+ .-..-..+++. +++..+.++-..
T Consensus 571 ~gvavd~~---~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd--~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLL---NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN--AKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECC---CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe--CCCCEEEEEeCC
Confidence 45788762 466777766665 9999964 55444433211000 11123456666 777623444455
Q ss_pred CCeEEEEECCCCeeEEEEEec-----------------CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccce
Q 016185 107 NGIIRVIDVSNEKLHKSFVGH-----------------GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNC 169 (394)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~ 169 (394)
++.|+++|+.++. +.++.+- -..-..++++|+++.++++.+.
T Consensus 645 n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------------------- 703 (1057)
T PLN02919 645 NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------------------- 703 (1057)
T ss_pred CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC--------------------
Confidence 6789999987654 4444221 0123578888866677777766
Q ss_pred eeeccCCcEEEEEecCCcEEEEeecc------CC------CcccEEEEEecCCCCe-eEEeeccCCcEEEEEccccceee
Q 016185 170 LRVGQDESVRLWNVQTGICILIFAGA------GG------HRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYV 236 (394)
Q Consensus 170 ~~~~~d~~i~vwd~~~~~~~~~~~~~------~~------~~~~i~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~ 236 (394)
++.|++||..++... .+... .+ .-.....++++| ++. ++++-+.++.|++||+.++..
T Consensus 704 -----~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~-- 774 (1057)
T PLN02919 704 -----QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGS-- 774 (1057)
T ss_pred -----CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcE--
Confidence 888999998766432 22100 00 112456799999 665 666767789999999887210
Q ss_pred ccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCC
Q 016185 237 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 316 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
....+ ...+. + +....+.+..... ....+. .
T Consensus 775 ----------------------~~~~g-g~~~~-----~--------~~l~~fG~~dG~g---------~~~~l~----~ 805 (1057)
T PLN02919 775 ----------------------RLLAG-GDPTF-----S--------DNLFKFGDHDGVG---------SEVLLQ----H 805 (1057)
T ss_pred ----------------------EEEEe-ccccc-----C--------cccccccCCCCch---------hhhhcc----C
Confidence 00000 00000 0 0001111111000 000111 1
Q ss_pred eEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccC------------CccCCeeEEEeccCCCEEEEeccCC
Q 016185 317 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA------------QSKSPIRQTAMSYDGSTILSCCEDG 384 (394)
Q Consensus 317 i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~s~~~dg 384 (394)
...+++++++ .++++-+.++.|++||..++.. ..+... ..-.....++++++|+++++-+.++
T Consensus 806 P~Gvavd~dG--~LYVADs~N~rIrviD~~tg~v---~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 806 PLGVLCAKDG--QIYVADSYNHKIKKLDPATKRV---TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred CceeeEeCCC--cEEEEECCCCEEEEEECCCCeE---EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 2478899998 5788888899999999987632 222210 1223578899999999999989999
Q ss_pred eEEEEEcCC
Q 016185 385 AIWRWDAIP 393 (394)
Q Consensus 385 ~i~iwd~~~ 393 (394)
.|++||+.+
T Consensus 881 ~Irvid~~~ 889 (1057)
T PLN02919 881 LIRYLDLNK 889 (1057)
T ss_pred EEEEEECCC
Confidence 999999865
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.33 E-value=6.3e-09 Score=91.76 Aligned_cols=284 Identities=13% Similarity=0.072 Sum_probs=158.4
Q ss_pred ceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec
Q 016185 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (394)
Q Consensus 49 ~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 127 (394)
+..++.++.++ +.-+|..+|+.+-..+... .+.. ... .++. .++.++.+|.+..+|..+++.+......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~------~~~~-~p~--v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDE------RLSG-GVG--ADGG-LVFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCC------Cccc-ceE--EcCC-EEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 34555666655 9999999998765544211 1111 111 3455 7888889999999999999888766532
Q ss_pred CCceeE-EEEcCCCCcEEEEcee-eeE---------Eeeccce---------eeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 128 GDSINE-IRTQPLKPSLVVSASK-VII---------ISSLSLI---------CLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 128 ~~~v~~-~~~~~~~~~~l~s~~~-~i~---------~~~~~~~---------~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
. .+.+ .... ++.+++.... .+. +|..... ......++.++++..++.+..+|.++|+
T Consensus 135 ~-~~~~~p~v~--~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 135 S-EVLSPPLVA--NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred c-eeecCCEEE--CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCC
Confidence 2 2211 1111 2233332221 222 2322110 1112234567888889999999999998
Q ss_pred EEEEeeccCCCc-c---cEEEEEecC-CCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeee
Q 016185 188 CILIFAGAGGHR-N---EVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 262 (394)
Q Consensus 188 ~~~~~~~~~~~~-~---~i~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (394)
.+.......... . ....+.-.| -.+..++.++.+|.++.||..+++..-. ..
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~-----------------------~~ 268 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK-----------------------RD 268 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe-----------------------ec
Confidence 765543100000 0 000110011 0234577778899999999988543211 11
Q ss_pred cCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC-CCCCeEEEEEeecCCcceEEEEeCCCcEE
Q 016185 263 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIF 341 (394)
Q Consensus 263 ~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 341 (394)
. .........++.++.++.+|.+..+|..+++. +-+... .......... .+ ..+++++.+|.|+
T Consensus 269 -~-~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~---------~W~~~~~~~~~~ssp~i--~g--~~l~~~~~~G~l~ 333 (377)
T TIGR03300 269 -A-SSYQGPAVDDNRLYVTDADGVVVALDRRSGSE---------LWKNDELKYRQLTAPAV--VG--GYLVVGDFEGYLH 333 (377)
T ss_pred -c-CCccCceEeCCEEEEECCCCeEEEEECCCCcE---------EEccccccCCccccCEE--EC--CEEEEEeCCCEEE
Confidence 0 01122233477888888999999999988762 222211 1111111112 23 4788899999999
Q ss_pred EEEecCCCceeeEEeccCCccCCeeE-EEeccCCCEEEEeccCCeEEEE
Q 016185 342 VWELQSSPPVLIARLSHAQSKSPIRQ-TAMSYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~iw 389 (394)
++|..+++ .+.+++ .+...+.. .++. + ..|+.++.||.|+.|
T Consensus 334 ~~d~~tG~--~~~~~~--~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 334 WLSREDGS--FVARLK--TDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEECCCCC--EEEEEE--cCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 99998885 455555 22222222 2222 3 468888999999876
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.1e-09 Score=93.59 Aligned_cols=301 Identities=10% Similarity=0.080 Sum_probs=176.0
Q ss_pred cccccceeeeeccCccceeEEEEEeeCCCcceEEEEecC----------C-c-EEEEEcCCCceeEEeeecccCCcccce
Q 016185 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG----------N-R-VTVYQCLEGGVIAALQSYVDEDKEESF 86 (394)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~----------d-~-i~vw~~~~~~~~~~~~~~~~~~~~~~v 86 (394)
....|...+.+- |. .|.-+.||| +.++|+|-+. + . ++|||+.+|...+.+..+..+...-+
T Consensus 237 GG~~f~r~~RF~-Hp-~Vq~idfSP----~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP- 309 (698)
T KOG2314|consen 237 GGESFDRIQRFY-HP-GVQFIDFSP----NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWP- 309 (698)
T ss_pred cCccHHHHHhcc-CC-CceeeecCC----ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccc-
Confidence 334444333332 43 478899999 7899999863 2 2 99999999999888886533222222
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeec
Q 016185 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIR 166 (394)
Q Consensus 87 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~ 166 (394)
-..|+ .|++ ++|.-.. ..|.||+..+..++-.-.-.-..|....|+| .+++||-=.....
T Consensus 310 -~frWS--~DdK-y~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~-------------- 369 (698)
T KOG2314|consen 310 -IFRWS--HDDK-YFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETN-------------- 369 (698)
T ss_pred -eEEec--cCCc-eeEEecc-ceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEccccc--------------
Confidence 35677 8898 8876665 5789998765433322222345688899999 6677764332000
Q ss_pred cceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEee----------ccCCcEEEEEccccceee
Q 016185 167 SNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC----------GMDNTVKIWSMKEFWTYV 236 (394)
Q Consensus 167 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~----------~~dg~v~iwd~~~~~~~~ 236 (394)
..-..+.+-.+.+++.++.-. -+.-.=..+.|-. +|.+|+.- +.-..+-|+.++..
T Consensus 370 ------~~parvtL~evPs~~~iRt~n---lfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK---- 435 (698)
T KOG2314|consen 370 ------NIPARVTLMEVPSKREIRTKN---LFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK---- 435 (698)
T ss_pred ------CCcceEEEEecCccceeeecc---ceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeecc----
Confidence 002245566666666555543 2222222344554 55555432 22223455555441
Q ss_pred ccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeec---CCeEEEecCCCCCCCCCCCcceeccccc
Q 016185 237 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV---DNEIVLWEPKMKEQSPGEGTADILQKYP 311 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 311 (394)
..|+..... ...|...+|. |+.+++-+. ..++.+|..++... ...++..+.
T Consensus 436 ------------------dIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~d 491 (698)
T KOG2314|consen 436 ------------------DIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELD 491 (698)
T ss_pred ------------------CCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhc
Confidence 223333332 3456666775 665554433 45688888874221 222444444
Q ss_pred CCCCCeEEEEEeecCCcceEEEE---eCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEecc------
Q 016185 312 VPECDIWFIKFSCDFHYNAAAIG---NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE------ 382 (394)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------ 382 (394)
. ...+.+.|+|.|+ +++.+ +..|.+.++|+.......+. +..| ...+.+.|.|.|+|+++++.
T Consensus 492 k--~~~N~vfwsPkG~--fvvva~l~s~~g~l~F~D~~~a~~k~~~---~~eh-~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 492 K--KFANTVFWSPKGR--FVVVAALVSRRGDLEFYDTDYADLKDTA---SPEH-FAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred c--cccceEEEcCCCc--EEEEEEecccccceEEEecchhhhhhcc---Cccc-cccccceECCCCCEEEEeeehhhhcc
Confidence 3 4567899999995 55543 46789999999853222222 2233 34677999999999999875
Q ss_pred CCeEEEEEcC
Q 016185 383 DGAIWRWDAI 392 (394)
Q Consensus 383 dg~i~iwd~~ 392 (394)
|.--+||+++
T Consensus 564 d~GYri~tfq 573 (698)
T KOG2314|consen 564 DNGYRIFTFQ 573 (698)
T ss_pred ccceEEEEee
Confidence 3445666653
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=7.9e-11 Score=93.40 Aligned_cols=263 Identities=17% Similarity=0.204 Sum_probs=156.6
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc-----eeEEeeecccC-------CcccceEEEEEEEcCCCCc
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-----VIAALQSYVDE-------DKEESFYTVSWACNVDGIP 99 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~-----~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~ 99 (394)
.+.|+++.|.. .|.++|+|..++ |.+|.-.... ....+++|..+ .-++.|..+.|. .+.|+.
T Consensus 26 ad~ItaVefd~----tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~-~~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDE----TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF-DDTGRN 100 (460)
T ss_pred cceeeEEEecc----ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee-cCCCcc
Confidence 56799999997 799999999888 8888754332 12234443221 235678888885 355555
Q ss_pred EEEEeecCCeEEEEECCCCee--E----------------------------------------EEE-EecCCceeEEEE
Q 016185 100 FLVAGGINGIIRVIDVSNEKL--H----------------------------------------KSF-VGHGDSINEIRT 136 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~~--~----------------------------------------~~~-~~~~~~v~~~~~ 136 (394)
.++..+.|.+|++|.+..... + +.+ ..|.--|.++.|
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 777788899999998754310 0 001 134444556666
Q ss_pred cCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCC-----cccEEEEEecCCC
Q 016185 137 QPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGH-----RNEVLSVDFHPSD 211 (394)
Q Consensus 137 ~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~ 211 (394)
+. +...++++. |=.|.+|+++-......+...+.| ..-|++..|+|..
T Consensus 181 Ns-D~et~lSaD--------------------------dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~ 233 (460)
T COG5170 181 NS-DKETLLSAD--------------------------DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM 233 (460)
T ss_pred cC-chheeeecc--------------------------ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH
Confidence 65 445555554 677888887643322222211133 3468899999977
Q ss_pred CeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEE
Q 016185 212 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL 289 (394)
Q Consensus 212 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~ 289 (394)
.+.|.-.+..|.|++-|++....-......+.. ..-+....-+..-...|..+.|+ |+++++- .--++++
T Consensus 234 cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-------~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-dyltvki 305 (460)
T COG5170 234 CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-------TIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-DYLTVKI 305 (460)
T ss_pred cceEEEecCCCcEEehhhhhhhhccCchhhhhh-------ccCcccchhHHHHhhhhcceEEcCCCcEEEEe-ccceEEE
Confidence 888888899999999999962110000000000 00001112223334567778887 6677763 4568999
Q ss_pred ecCCCCCCCCCCCcceecccccCCC------------C---CeEEEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 290 WEPKMKEQSPGEGTADILQKYPVPE------------C---DIWFIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 290 ~d~~~~~~~~~~~~~~~~~~~~~~~------------~---~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
||.+..+. ++.+.+.|. . .-..+.|+-+. ..+.+|+..+..-+|-.
T Consensus 306 wDvnm~k~--------pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~--~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 306 WDVNMAKN--------PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD--KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EecccccC--------CceeechHHHHHHHHHhhhhccceeeeEEEEecCCc--ccccccccccceeeecc
Confidence 99988764 233332221 1 12345666666 57778877776666664
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.31 E-value=2e-09 Score=83.74 Aligned_cols=231 Identities=12% Similarity=0.044 Sum_probs=152.3
Q ss_pred EEEEeecCCeEEEEECCCCee-EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcE
Q 016185 100 FLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESV 178 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (394)
+|+.|+..|...+|...+.+. .+....|...|.-+.=.-+....+..++. |.++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sn-------------------------dht~ 140 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASN-------------------------DHTG 140 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccC-------------------------Ccce
Confidence 899999999999999986543 33334454433322211112234555566 8899
Q ss_pred EEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccce
Q 016185 179 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 258 (394)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (394)
++.+++-+....... ...-.+.++++++ ++.++++.+....|..|.+.......+.
T Consensus 141 k~~~~~~~s~~~~~h---~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~-------------------- 196 (344)
T KOG4532|consen 141 KTMVVSGDSNKFAVH---NQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIEN-------------------- 196 (344)
T ss_pred eEEEEecCcccceee---ccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeee--------------------
Confidence 999886544333222 1112378999999 9999999999999999999884332211
Q ss_pred eeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC
Q 016185 259 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 336 (394)
Q Consensus 259 ~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 336 (394)
.......+.-.+..|+ ...++++..||++.+||++....+. ...-..-+.|.+.+..+.|++.+...+|...-.
T Consensus 197 ~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh 272 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH 272 (344)
T ss_pred eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecC
Confidence 1222334445566776 6699999999999999999775321 112233445888999999999876667777777
Q ss_pred CCcEEEEEecCCCceeeEEec---cCCcc-CCeeEEEeccCCCEEEEeccC
Q 016185 337 EGKIFVWELQSSPPVLIARLS---HAQSK-SPIRQTAMSYDGSTILSCCED 383 (394)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~---~~~~~-~~v~~~~~s~~~~~l~s~~~d 383 (394)
-+.+.+.|+++.....+..+. ...|. ..|..-.|+.++..+.+.+++
T Consensus 273 fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 273 FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred cceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 788999999987543333332 11233 337788888877766665544
No 269
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1e-09 Score=98.51 Aligned_cols=162 Identities=15% Similarity=0.072 Sum_probs=101.8
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCC---c-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEE
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGN---R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d---~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 103 (394)
.+..+...+...+|+| +|+.|+..+.+ . |.+|++.+++... +.. ..+.....+|+ |+|+.++++
T Consensus 193 ~l~~~~~~~~~p~wSp----DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~-----~~g~~~~~~~S--pDG~~la~~ 260 (430)
T PRK00178 193 TLLQSREPILSPRWSP----DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITN-----FEGLNGAPAWS--PDGSKLAFV 260 (430)
T ss_pred EEecCCCceeeeeECC----CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccC-----CCCCcCCeEEC--CCCCEEEEE
Confidence 3445677899999999 78887765532 2 8999998876432 221 12223345666 999834445
Q ss_pred eecCC--eEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC--cEE
Q 016185 104 GGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE--SVR 179 (394)
Q Consensus 104 ~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~--~i~ 179 (394)
...+| .|.+||+.+++.. .+..+........|+|++..++++... ++ .|.
T Consensus 261 ~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~-------------------------~g~~~iy 314 (430)
T PRK00178 261 LSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDR-------------------------GGKPQIY 314 (430)
T ss_pred EccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECC-------------------------CCCceEE
Confidence 55555 6888898877643 455455556778999944444444433 33 577
Q ss_pred EEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccC-C--cEEEEEcccc
Q 016185 180 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-N--TVKIWSMKEF 232 (394)
Q Consensus 180 vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d-g--~v~iwd~~~~ 232 (394)
++|+.+++...... .........|+| +++.++..+.+ + .|.++|+.++
T Consensus 315 ~~d~~~g~~~~lt~----~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 315 KVNVNGGRAERVTF----VGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred EEECCCCCEEEeec----CCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCC
Confidence 77877776443322 122334578999 88777766543 3 4778888774
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.1e-09 Score=90.97 Aligned_cols=275 Identities=10% Similarity=0.086 Sum_probs=168.7
Q ss_pred eeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec---------
Q 016185 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI--------- 106 (394)
Q Consensus 36 v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~--------- 106 (394)
=+-+.||| .|.+|+|--..||.+|--.+-..++.+. | ..|.-+.|+ |+.+ ||+|-+.
T Consensus 213 etyv~wSP----~GTYL~t~Hk~GI~lWGG~~f~r~~RF~------H-p~Vq~idfS--P~Ek-YLVT~s~~p~~~~~~d 278 (698)
T KOG2314|consen 213 ETYVRWSP----KGTYLVTFHKQGIALWGGESFDRIQRFY------H-PGVQFIDFS--PNEK-YLVTYSPEPIIVEEDD 278 (698)
T ss_pred eeeEEecC----CceEEEEEeccceeeecCccHHHHHhcc------C-CCceeeecC--Cccc-eEEEecCCccccCccc
Confidence 35689999 7999999999999999855554444443 2 244556666 8888 8988653
Q ss_pred --CCeEEEEECCCCeeEEEEEecC--Ccee-EEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEE
Q 016185 107 --NGIIRVIDVSNEKLHKSFVGHG--DSIN-EIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLW 181 (394)
Q Consensus 107 --dg~i~vwd~~~~~~~~~~~~~~--~~v~-~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw 181 (394)
...++|||+.+|...+.+.... ..+. -..||. +..++|.-. ..+|.||
T Consensus 279 ~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~--------------------------~~sisIy 331 (698)
T KOG2314|consen 279 NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMT--------------------------GNSISIY 331 (698)
T ss_pred CCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEec--------------------------cceEEEE
Confidence 2579999999999988887532 2222 467898 668887766 4679999
Q ss_pred EecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccC-----CcEEEEEccccceeeccccccCCCCCCCCcccccc
Q 016185 182 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256 (394)
Q Consensus 182 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (394)
+...-.++..-. -.-..|....|+| .+++|+--... ..+.+-.+.+. .
T Consensus 332 Etpsf~lld~Ks---lki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~-----------------------~ 384 (698)
T KOG2314|consen 332 ETPSFMLLDKKS---LKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSK-----------------------R 384 (698)
T ss_pred ecCceeeecccc---cCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCcc-----------------------c
Confidence 876533222111 2456788999999 76666543221 23344444331 1
Q ss_pred ceeeeecCCCceEEEEEe--CcEEEEe----------ecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEee
Q 016185 257 PVFIASVHSNYVDCNRWL--GDFILSK----------SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 324 (394)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~--~~~l~~~----------~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 324 (394)
.++....+.-.=..+.|. |++|..- +.-..+.|+.++.... ++.... -...|...+|-|
T Consensus 385 ~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--------pve~ve-lke~vi~FaWEP 455 (698)
T KOG2314|consen 385 EIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--------PVEVVE-LKESVIAFAWEP 455 (698)
T ss_pred eeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC--------Cceeee-cchheeeeeecc
Confidence 222222222222223332 5555432 2223455666655432 111111 134677889999
Q ss_pred cCCcceEEEEeC--CCcEEEEEecC--CCceeeEEeccCCccCCeeEEEeccCCCEEEEe---ccCCeEEEEEcC
Q 016185 325 DFHYNAAAIGNR--EGKIFVWELQS--SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC---CEDGAIWRWDAI 392 (394)
Q Consensus 325 ~~~~~~l~~~~~--dg~i~iwd~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~---~~dg~i~iwd~~ 392 (394)
.|. ++.+..+. ..++.+|.+.+ ..+.++..+. . ...+.+.|+|.|++++.+ |..|.+..+|+.
T Consensus 456 ~gd-kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 456 HGD-KFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--K--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred CCC-eEEEEEccccccceeEEEeecCCCchhhhhhhc--c--cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 996 23333332 35789998874 3344555555 2 457789999999999876 457889999875
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.2e-10 Score=98.45 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=97.7
Q ss_pred eccCccceeEEEEEeeCCCcceEEEEecC-C-c--EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEe
Q 016185 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGG-N-R--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (394)
Q Consensus 29 ~~~h~~~v~~i~~sp~~~~~~~~las~~~-d-~--i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 104 (394)
+..+...+.+.+|+| +|+.|+..+. + . |.+||+.+++.. .+... .+.....+|+ |||+.++++.
T Consensus 213 l~~~~~~~~~p~wSP----DG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~-----~g~~~~~~wS--PDG~~La~~~ 280 (448)
T PRK04792 213 LLRSPEPLMSPAWSP----DGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSF-----PGINGAPRFS--PDGKKLALVL 280 (448)
T ss_pred eecCCCcccCceECC----CCCEEEEEEecCCCcEEEEEECCCCCeE-EecCC-----CCCcCCeeEC--CCCCEEEEEE
Confidence 344566788999999 7887776543 2 2 899998887642 22211 1122345666 9999444556
Q ss_pred ecCCe--EEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC--cEEE
Q 016185 105 GINGI--IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE--SVRL 180 (394)
Q Consensus 105 ~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~--~i~v 180 (394)
+.+|. |.++|+.+++. ..+..+........|+|++..++++... ++ .|.+
T Consensus 281 ~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~-------------------------~g~~~Iy~ 334 (448)
T PRK04792 281 SKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSER-------------------------GGKPQIYR 334 (448)
T ss_pred eCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECC-------------------------CCCceEEE
Confidence 66665 77788877654 3444455566788999944444444443 34 4666
Q ss_pred EEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeecc-CC--cEEEEEcccc
Q 016185 181 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DN--TVKIWSMKEF 232 (394)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-dg--~v~iwd~~~~ 232 (394)
+|+.+++...... ........+|+| +++.|+..+. ++ .|.++|+.++
T Consensus 335 ~dl~~g~~~~Lt~----~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 335 VNLASGKVSRLTF----EGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred EECCCCCEEEEec----CCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCCC
Confidence 6776666543321 222234578999 7777766544 44 3455676663
No 272
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.26 E-value=1.4e-10 Score=89.58 Aligned_cols=208 Identities=17% Similarity=0.196 Sum_probs=125.0
Q ss_pred cceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee-----cCCeEEEEECCCCeeE
Q 016185 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-----INGIIRVIDVSNEKLH 121 (394)
Q Consensus 48 ~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~-----~dg~i~vwd~~~~~~~ 121 (394)
.++.++++..|+ +.+++.+.-. .+....+..|.+. .+.+.. ..++ .+.++. .-+..+.|+++..+..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~---~~~~~i~~~~~~~-as~~~~--~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~ 172 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDL---ALMSRIPSIHSGS-ASRKIC--RHGN-SILSGGCGNWNAQDNFYANTLDPIKTL 172 (319)
T ss_pred cCCceEecCCCceEEEEechHHH---hhhhhcccccccc-ccccee--eccc-EEecCCcceEeeccceeeecccccccc
Confidence 367799999998 8888865521 1111111111111 112222 3444 444432 2234566666543322
Q ss_pred EEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCccc
Q 016185 122 KSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNE 201 (394)
Q Consensus 122 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 201 (394)
..-......|.+++-+|...+++++|+. ||.+.+||.++......+. ..|+.+
T Consensus 173 ~~~~~~~~~v~~l~~hp~qq~~v~cgt~-------------------------dg~~~l~d~rn~~~p~S~l--~ahk~~ 225 (319)
T KOG4714|consen 173 IPSKKALDAVTALCSHPAQQHLVCCGTD-------------------------DGIVGLWDARNVAMPVSLL--KAHKAE 225 (319)
T ss_pred cccccccccchhhhCCcccccEEEEecC-------------------------CCeEEEEEcccccchHHHH--HHhhhh
Confidence 2212223349999999977788889998 9999999999875433322 379999
Q ss_pred EEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceee---eecCCCceEEEEEeCcEE
Q 016185 202 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI---ASVHSNYVDCNRWLGDFI 278 (394)
Q Consensus 202 i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~l 278 (394)
|..+.|+|.++..|++++.||.+..||..+.- +....+......-+........+.. +......|.++...|..+
T Consensus 226 i~eV~FHpk~p~~Lft~sedGslw~wdas~~~--l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~l 303 (319)
T KOG4714|consen 226 IWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF--LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCL 303 (319)
T ss_pred hhheeccCCCchheeEecCCCcEEEEcCCCce--EEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceE
Confidence 99999999999999999999999999998621 1111111222222222222221221 122223455555559999
Q ss_pred EEeecCCeEEEec
Q 016185 279 LSKSVDNEIVLWE 291 (394)
Q Consensus 279 ~~~~~dg~i~~~d 291 (394)
++|+.-+.|++++
T Consensus 304 Vcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 304 VCGTDAEAIYLTR 316 (319)
T ss_pred EeccccceEEEec
Confidence 9999999998876
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=5.3e-11 Score=101.64 Aligned_cols=291 Identities=10% Similarity=0.065 Sum_probs=180.0
Q ss_pred eeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCc-eeE-EeeecccCCcccceEEEEEEEcCCCCcEEEE
Q 016185 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIA-ALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (394)
Q Consensus 27 ~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 103 (394)
..+.||+..|..++--. +.+-+++++.|+ |++|.++... .+. .--.+....|+.+|..+.|- .+.+ ++++
T Consensus 729 ~nf~GH~~~iRai~Aid----NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL--~~lr-~i~S 801 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAID----NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL--ADLR-SIAS 801 (1034)
T ss_pred ecccCcHHHhHHHHhcc----cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee--eccc-eeee
Confidence 34579999999987654 578899999998 9999987532 111 11123334789999999987 6665 5554
Q ss_pred eecCCeEEEEECCCCeeEEEEEe--cCCceeEEEEcCC-CCcE-EEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 104 GGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPL-KPSL-VVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~-l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
.||.|.+||.--++++..+.. ..+.+..+..-|. +..+ ++.++. ..+|+
T Consensus 802 --cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsa-------------------------eSTVK 854 (1034)
T KOG4190|consen 802 --CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSA-------------------------ESTVK 854 (1034)
T ss_pred --ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccc-------------------------hhhhe
Confidence 478999999887776654431 1122333333332 3333 444466 89999
Q ss_pred EEEecCCcEEEEeecc--CCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccc
Q 016185 180 LWNVQTGICILIFAGA--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 257 (394)
Q Consensus 180 vwd~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (394)
++|.+.++....++.. .+...-+.+++..+ .|+.++.+-.+|.|.+.|.++++.
T Consensus 855 l~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~v----------------------- 910 (1034)
T KOG4190|consen 855 LFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKV----------------------- 910 (1034)
T ss_pred eeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCce-----------------------
Confidence 9999998877766632 34556789999999 999999999999999999999652
Q ss_pred eeeeecCCCceEEE-EEeCcEEEEeecCCeEEE-ecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEe
Q 016185 258 VFIASVHSNYVDCN-RWLGDFILSKSVDNEIVL-WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 335 (394)
Q Consensus 258 ~~~~~~~~~~i~~~-~~~~~~l~~~~~dg~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 335 (394)
+..+..-......+ +.+.+.++....|.++.+ |-...+.. ....+.+..+... ...-| .-++++.
T Consensus 911 INswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgim---------h~q~kpppepahf--lqsvg--pSLV~a~ 977 (1034)
T KOG4190|consen 911 INSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIM---------HLQDKPPPEPAHF--LQSVG--PSLVTAQ 977 (1034)
T ss_pred eccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCee---------eeccCCCCcchhh--hhccC--ceeEEec
Confidence 11111111111111 112556677777888887 77665531 1111111111100 01112 3466666
Q ss_pred CCCcEEEEEecCCC--ceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEE
Q 016185 336 REGKIFVWELQSSP--PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 388 (394)
Q Consensus 336 ~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 388 (394)
..+.+.+|.-.... ...+.++......+..++++--|-..-+..|+..|.|.+
T Consensus 978 ~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 978 NGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 66677777432210 012223333345577888988887777778888888875
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.24 E-value=1.3e-07 Score=91.12 Aligned_cols=261 Identities=16% Similarity=0.159 Sum_probs=156.9
Q ss_pred ceEEEEEEEcCCCCcEEEEeec---C---CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEcee-----eeEE
Q 016185 85 SFYTVSWACNVDGIPFLVAGGI---N---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-----VIII 153 (394)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----~i~~ 153 (394)
.-..++|. .||+ ++|+.+. . ..++||+ ++|+...+-..-.+--.+++|.| .++++|+... .|.+
T Consensus 211 ~~~~ISWR--GDG~-yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 211 GRVRISWR--GDGE-YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred CceEEEEC--CCCc-EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEE
Confidence 34557788 9999 8887764 3 4799999 45665444333333345789999 8888888765 3333
Q ss_pred eec-----------------cceeeeeeeccceeeeccCCcEEEEEecCCcE--EEEeeccCCCcccEEEEEecCCCCee
Q 016185 154 SSL-----------------SLICLLLFIRSNCLRVGQDESVRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYR 214 (394)
Q Consensus 154 ~~~-----------------~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (394)
+.. .+..+.+..++.+++.--...|.+|-..+..- .+.+.- .....+..+.|+|.+...
T Consensus 286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~--~~~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 286 FERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRF--SSSESVNFVKWDPEKPLR 363 (928)
T ss_pred EecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEc--cCCCCCCceEECCCCCCE
Confidence 322 23555566677777777666799999877652 223321 233445669999977778
Q ss_pred EEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCC
Q 016185 215 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 294 (394)
Q Consensus 215 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~ 294 (394)
|...+.+|.+..+++.-. +........ +..-++..-...++++-.++.
T Consensus 364 L~v~t~~g~~~~~~~~~~-------------------------v~~s~~~~~-------~D~g~vaVIDG~~lllTpf~~ 411 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFAWD-------------------------VSRSPGSSP-------NDNGTVAVIDGNKLLLTPFRR 411 (928)
T ss_pred EEEEecCCcEEEEEEEEE-------------------------EEecCCCCc-------cCceEEEEEeCCeEEEecccc
Confidence 888888888888777651 111111110 011112212233566666665
Q ss_pred CCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCce------eeEEec--------cCC
Q 016185 295 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV------LIARLS--------HAQ 360 (394)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~--------~~~ 360 (394)
...++ +-....+.. ..+|..++|++++ ..+++-..||.|.+|........ ....+. ...
T Consensus 412 a~VPP----PMs~~~l~~-~~~v~~vaf~~~~--~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (928)
T PF04762_consen 412 AVVPP----PMSSYELEL-PSPVNDVAFSPSN--SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSEL 484 (928)
T ss_pred cCCCc----hHhceEEcC-CCCcEEEEEeCCC--CeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccc
Confidence 54322 111222232 4679999999998 45899999999999996543211 111111 011
Q ss_pred ccCCeeEEEeccCCCEEEEeccC---CeEEEEEc
Q 016185 361 SKSPIRQTAMSYDGSTILSCCED---GAIWRWDA 391 (394)
Q Consensus 361 ~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~ 391 (394)
....+..++|..+..+++....+ ..+.++++
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 485 PLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred ccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 23567888888877766665554 56777776
No 275
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=9.9e-09 Score=91.16 Aligned_cols=243 Identities=13% Similarity=0.082 Sum_probs=131.0
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCc--EEEEeecCC--eEEEEECCCCeeEEEEEecCCceeEEE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP--FLVAGGING--IIRVIDVSNEKLHKSFVGHGDSINEIR 135 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~ 135 (394)
|.+.|...+.. ..+. ........-.|+ |||+. ++++...+| .|.+.++..++.. .+....+.....+
T Consensus 167 l~~~d~dG~~~-~~lt-----~~~~~~~sP~wS--PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~ 237 (428)
T PRK01029 167 LWSVDYDGQNL-RPLT-----QEHSLSITPTWM--HIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPT 237 (428)
T ss_pred EEEEcCCCCCc-eEcc-----cCCCCcccceEc--cCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceE
Confidence 66677554433 3333 122334445777 99873 223444443 5777788776543 3333444556789
Q ss_pred EcCCCCcEEE-EceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC---cEEEEeeccCCCcccEEEEEecCCC
Q 016185 136 TQPLKPSLVV-SASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG---ICILIFAGAGGHRNEVLSVDFHPSD 211 (394)
Q Consensus 136 ~~~~~~~~l~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~ 211 (394)
|+| +++.|+ +... .|..+-.+..|++..+ +..+... .........+|+| |
T Consensus 238 wSP-DG~~Laf~s~~---------------------~g~~di~~~~~~~~~g~~g~~~~lt~---~~~~~~~~p~wSP-D 291 (428)
T PRK01029 238 FSP-RKKLLAFISDR---------------------YGNPDLFIQSFSLETGAIGKPRRLLN---EAFGTQGNPSFSP-D 291 (428)
T ss_pred ECC-CCCEEEEEECC---------------------CCCcceeEEEeecccCCCCcceEeec---CCCCCcCCeEECC-C
Confidence 999 555554 4332 0011333455776653 3333332 2223446789999 8
Q ss_pred CeeEEeec-cCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecC---C
Q 016185 212 IYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---N 285 (394)
Q Consensus 212 ~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---g 285 (394)
++.|+..+ .+|...+|.+..... ......+..+...+....|+ |+.|+..+.+ .
T Consensus 292 G~~Laf~s~~~g~~~ly~~~~~~~--------------------g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~ 351 (428)
T PRK01029 292 GTRLVFVSNKDGRPRIYIMQIDPE--------------------GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVR 351 (428)
T ss_pred CCEEEEEECCCCCceEEEEECccc--------------------ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCc
Confidence 87666554 567666665432000 00122233333445566676 7777765443 4
Q ss_pred eEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEE-EEeC--CCcEEEEEecCCCceeeEEeccCCcc
Q 016185 286 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA-IGNR--EGKIFVWELQSSPPVLIARLSHAQSK 362 (394)
Q Consensus 286 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (394)
.|.+||+.+++. ..+......+....|+|+++ .|+ ++.. ...|+++|+..++... +. ...
T Consensus 352 ~I~v~dl~~g~~----------~~Lt~~~~~~~~p~wSpDG~--~L~f~~~~~g~~~L~~vdl~~g~~~~---Lt--~~~ 414 (428)
T PRK01029 352 QICVYDLATGRD----------YQLTTSPENKESPSWAIDSL--HLVYSAGNSNESELYLISLITKKTRK---IV--IGS 414 (428)
T ss_pred EEEEEECCCCCe----------EEccCCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCEEE---ee--cCC
Confidence 799999987752 22222223456788999995 444 4333 3568888888775332 22 222
Q ss_pred CCeeEEEeccCC
Q 016185 363 SPIRQTAMSYDG 374 (394)
Q Consensus 363 ~~v~~~~~s~~~ 374 (394)
+.+...+|+|-.
T Consensus 415 g~~~~p~Ws~~~ 426 (428)
T PRK01029 415 GEKRFPSWGAFP 426 (428)
T ss_pred CcccCceecCCC
Confidence 456677888753
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.2e-08 Score=87.51 Aligned_cols=256 Identities=16% Similarity=0.196 Sum_probs=165.4
Q ss_pred ceeEEEEEeeCCCcceEEEEec------C----Cc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEE
Q 016185 35 PLYAVVFNFIDSRYFNVFATVG------G----NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (394)
Q Consensus 35 ~v~~i~~sp~~~~~~~~las~~------~----d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 103 (394)
.++++.||| .|++|.+-- . .. +.+|+..++.....++.- .+.. ++..|+ .|.. |++
T Consensus 75 ~~~~L~fSP----~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k----~Q~~-W~~qfs--~dEs--l~a 141 (566)
T KOG2315|consen 75 KTYDLLFSP----KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKK----MQNG-WVPQFS--IDES--LAA 141 (566)
T ss_pred eeeeeeecc----cccccccccccccccCCCCCCCceeeeeeccceehhheehh----hhcC-cccccc--cchh--hhh
Confidence 788999999 677776532 1 12 889999886554444421 2222 466666 6654 555
Q ss_pred eecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCC-CCcEEEEc-----ee--eeEEeeccc-----------------
Q 016185 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSA-----SK--VIIISSLSL----------------- 158 (394)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~-----~~--~i~~~~~~~----------------- 158 (394)
=-..+.+.+|++.+.+.... +-|...|+.+.++|. ....+++- +. .+++|..+.
T Consensus 142 rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadk 220 (566)
T KOG2315|consen 142 RLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADK 220 (566)
T ss_pred hhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccce
Confidence 55567899999876433222 236778999999994 23344431 11 778887642
Q ss_pred eeeeeeecc--ceeeecc-----------CCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEe--eccCCc
Q 016185 159 ICLLLFIRS--NCLRVGQ-----------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS--CGMDNT 223 (394)
Q Consensus 159 ~~~~~~~~~--~~~~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s--~~~dg~ 223 (394)
+.+.+...+ .++.+.. ..++++.++......-.+. ..++|.++.|+| ++..|++ |..-.+
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~----k~GPVhdv~W~~-s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL----KEGPVHDVTWSP-SGREFAVVYGFMPAK 295 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC----CCCCceEEEECC-CCCEEEEEEecccce
Confidence 333333322 2333221 3467888877444444443 689999999999 8765554 456788
Q ss_pred EEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeec---CCeEEEecCCCCCCC
Q 016185 224 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV---DNEIVLWEPKMKEQS 298 (394)
Q Consensus 224 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~---dg~i~~~d~~~~~~~ 298 (394)
+.+||++.. + .+...+++-.++-|+ |++++.++. -|.+.+||..+.+
T Consensus 296 vtifnlr~~------------------------~--v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K-- 347 (566)
T KOG2315|consen 296 VTIFNLRGK------------------------P--VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK-- 347 (566)
T ss_pred EEEEcCCCC------------------------E--eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh--
Confidence 999999872 2 223344555677776 888887776 5789999999865
Q ss_pred CCCCcceecccccCCCCCeEEEEEeecCCcceEEEEe------CCCcEEEEEecCC
Q 016185 299 PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN------REGKIFVWELQSS 348 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~ 348 (394)
.+.++.... -+-+.|+|||+ ++++++ .|+.++||+....
T Consensus 348 -------~i~~~~a~~--tt~~eW~PdGe--~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 348 -------LIAKFKAAN--TTVFEWSPDGE--YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred -------hccccccCC--ceEEEEcCCCc--EEEEEeccccEEecCCeEEEEecCc
Confidence 455555443 45679999995 666665 3788999998654
No 277
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=8.7e-09 Score=91.50 Aligned_cols=202 Identities=9% Similarity=0.090 Sum_probs=112.7
Q ss_pred eccCccceeEEEEEeeCCCcceE--E-EEecCC-c--EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEE
Q 016185 29 LQEGKRPLYAVVFNFIDSRYFNV--F-ATVGGN-R--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (394)
Q Consensus 29 ~~~h~~~v~~i~~sp~~~~~~~~--l-as~~~d-~--i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (394)
+......+..-+||| ||+. + ++...+ . |.+.++.+++... +.. ..+.....+|+ |||+.+++
T Consensus 180 lt~~~~~~~sP~wSP----DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~-----~~g~~~~p~wS--PDG~~Laf 247 (428)
T PRK01029 180 LTQEHSLSITPTWMH----IGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILA-----LQGNQLMPTFS--PRKKLLAF 247 (428)
T ss_pred cccCCCCcccceEcc----CCCceEEEEEEccCCCceEEEEECCCCCceE-eec-----CCCCccceEEC--CCCCEEEE
Confidence 333455667789999 5543 2 233333 2 8899988776433 321 12223345666 99983444
Q ss_pred EeecCC----eEEEEECCCC---eeEEEEEecCCceeEEEEcCCCCcEEE-EceeeeEEeeccceeeeeeeccceeeecc
Q 016185 103 AGGING----IIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVV-SASKVIIISSLSLICLLLFIRSNCLRVGQ 174 (394)
Q Consensus 103 s~~~dg----~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
+...+| .+.+|++..+ +..+....+.......+|+| ++..|+ +...
T Consensus 248 ~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~------------------------- 301 (428)
T PRK01029 248 ISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNK------------------------- 301 (428)
T ss_pred EECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECC-------------------------
Confidence 443333 3445776643 33333333333456789999 555544 4444
Q ss_pred CCcEEEEE--ecC-CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccC---CcEEEEEccccceeeccccccCCCCCC
Q 016185 175 DESVRLWN--VQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSK 248 (394)
Q Consensus 175 d~~i~vwd--~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~ 248 (394)
+|...+|. +.. +.....+. .+...+....|+| +++.|+..+.+ ..|.+||+.+++.
T Consensus 302 ~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~-------------- 363 (428)
T PRK01029 302 DGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRD-------------- 363 (428)
T ss_pred CCCceEEEEECcccccceEEec---cCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCe--------------
Confidence 56555554 432 23334343 3445677899999 88877765443 4689999887431
Q ss_pred CCccccccceeeeecCCCceEEEEEe--CcEEEEeec---CCeEEEecCCCCC
Q 016185 249 FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV---DNEIVLWEPKMKE 296 (394)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~---dg~i~~~d~~~~~ 296 (394)
..+......+....|+ |+.|+.... ...|.++|+..++
T Consensus 364 ----------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 364 ----------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred ----------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 1111122234556665 666654332 3568888887664
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.19 E-value=1.1e-07 Score=80.64 Aligned_cols=271 Identities=11% Similarity=-0.025 Sum_probs=147.5
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecC-----------CcEEEEEcCCCceeEEeeecccCCcccceEEE
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-----------NRVTVYQCLEGGVIAALQSYVDEDKEESFYTV 89 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~-----------d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~ 89 (394)
...+....+..-..+-- + +|| +++.|+.+.. |.|.+||..+.+.+..+..-..+.........
T Consensus 35 ~~~~v~g~i~~G~~P~~-~-~sp----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~ 108 (352)
T TIGR02658 35 EAGRVLGMTDGGFLPNP-V-VAS----DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPW 108 (352)
T ss_pred CCCEEEEEEEccCCCce-e-ECC----CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccc
Confidence 34555555543333322 4 888 6666666655 33999999999998888743221111122223
Q ss_pred EEEEcCCCCcEEEEee-c-CCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeecc
Q 016185 90 SWACNVDGIPFLVAGG-I-NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRS 167 (394)
Q Consensus 90 ~~~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~ 167 (394)
.+.++|||+ +|+... . ++.|.+.|+.+++.+.++.-.. ...-...++ +. ..+-|.
T Consensus 109 ~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~~~~~------------------- 165 (352)
T TIGR02658 109 MTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FFMHCR------------------- 165 (352)
T ss_pred eEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cEEEee-------------------
Confidence 455569999 666554 3 7999999999999998887522 222222222 22 222222
Q ss_pred ceeeeccCCcEEEEEecC-CcEE-EEeeccCC-----CcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecccc
Q 016185 168 NCLRVGQDESVRLWNVQT-GICI-LIFAGAGG-----HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 168 ~~~~~~~d~~i~vwd~~~-~~~~-~~~~~~~~-----~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 240 (394)
||......+.+ |+.. ........ ...+ .|.+.++.++..... |+|.+.|+...........
T Consensus 166 -------Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 166 -------DGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred -------cCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence 44444433322 2211 00000000 0122 334436666666555 9999999766321111100
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEee----------cCCeEEEecCCCCCCCCCCCcceecc
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS----------VDNEIVLWEPKMKEQSPGEGTADILQ 308 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~----------~dg~i~~~d~~~~~~~~~~~~~~~~~ 308 (394)
. ... .....-...+....-++++ ++.++... ..+.|.++|..+.+ .+.
T Consensus 234 ~--~~~---------~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---------vi~ 293 (352)
T TIGR02658 234 E--AFT---------EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---------RLR 293 (352)
T ss_pred e--ecc---------ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---------EEE
Confidence 0 000 0000001123333346665 66555532 22589999999886 455
Q ss_pred cccCCCCCeEEEEEeecCCcceEEEEe-CCCcEEEEEecCCCceeeEEe
Q 016185 309 KYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPVLIARL 356 (394)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 356 (394)
.+.. ...+..++++|+++. +|++.. .++.|.++|..+++ .+..+
T Consensus 294 ~i~v-G~~~~~iavS~Dgkp-~lyvtn~~s~~VsViD~~t~k--~i~~i 338 (352)
T TIGR02658 294 KIEL-GHEIDSINVSQDAKP-LLYALSTGDKTLYIFDAETGK--ELSSV 338 (352)
T ss_pred EEeC-CCceeeEEECCCCCe-EEEEeCCCCCcEEEEECcCCe--EEeee
Confidence 5443 347889999999953 555444 68889999998884 56655
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.16 E-value=5.2e-10 Score=91.88 Aligned_cols=158 Identities=15% Similarity=0.235 Sum_probs=107.7
Q ss_pred eEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCce-eEEeeecccCCcccceEEEEEEEcCCCCcEEEE---eecCCeEE
Q 016185 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPFLVA---GGINGIIR 111 (394)
Q Consensus 37 ~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s---~~~dg~i~ 111 (394)
..+.++| .++++|.+..++ ..+++...... .+.+....-+... +.+.+. .+.. .+.. .+....+.
T Consensus 66 ~~~~~s~----~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~---~ai~~~--~~~~-sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 66 ALVLTSD----SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP---TAISFI--REDT-SVLVADKAGDVYSFD 135 (390)
T ss_pred cccccCC----CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc---ceeeee--eccc-eEEEEeecCCceeee
Confidence 3344555 688999888776 66777665443 2222222111111 223332 3333 3333 34455666
Q ss_pred EEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEE
Q 016185 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILI 191 (394)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 191 (394)
+|....+ +...+-+|-..+.+++|+| ++.+++++.+ |..|+|-....-..+..
T Consensus 136 i~s~~~~-~~~~~lGhvSml~dVavS~-D~~~IitaDR-------------------------DEkIRvs~ypa~f~Ies 188 (390)
T KOG3914|consen 136 ILSADSG-RCEPILGHVSMLLDVAVSP-DDQFIITADR-------------------------DEKIRVSRYPATFVIES 188 (390)
T ss_pred eeccccc-CcchhhhhhhhhheeeecC-CCCEEEEecC-------------------------CceEEEEecCcccchhh
Confidence 6766553 3445568999999999999 6799999999 99999988776666666
Q ss_pred eeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEcccccee
Q 016185 192 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY 235 (394)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 235 (394)
+.. ||+..|..++.-+ +..|++++.|+++++||+++++..
T Consensus 189 fcl--GH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 189 FCL--GHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hcc--ccHhheeeeeecc--CceeeecCCCCcEEEEecccCCcc
Confidence 553 7999999999985 556999999999999999997653
No 280
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=1.2e-06 Score=71.74 Aligned_cols=285 Identities=15% Similarity=0.117 Sum_probs=165.1
Q ss_pred cCccceeEEEEEeeCCCcceEEEEecCC---c-EEEEEcCCC-ceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee
Q 016185 31 EGKRPLYAVVFNFIDSRYFNVFATVGGN---R-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~~~~~~las~~~d---~-i~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~ 105 (394)
.+.+.++=|+|+| +++.|.++..+ + |.-|.+... ..+..+...... ..+-..+++. ++|+ +|+++.
T Consensus 37 ~~~~nptyl~~~~----~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~--g~~p~yvsvd--~~g~-~vf~An 107 (346)
T COG2706 37 AELGNPTYLAVNP----DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP--GSPPCYVSVD--EDGR-FVFVAN 107 (346)
T ss_pred cccCCCceEEECC----CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC--CCCCeEEEEC--CCCC-EEEEEE
Confidence 4567788899999 67777777654 3 877777653 233333322221 1222445555 9999 777775
Q ss_pred c-CCeEEEEECCC-CeeEE--EEEecCCc----------eeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceee
Q 016185 106 I-NGIIRVIDVSN-EKLHK--SFVGHGDS----------INEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLR 171 (394)
Q Consensus 106 ~-dg~i~vwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~ 171 (394)
. .|.|.++-+++ |.+.. ....|.+. +....+.| ++++|++.+.
T Consensus 108 Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DL---------------------- 164 (346)
T COG2706 108 YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDL---------------------- 164 (346)
T ss_pred ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeec----------------------
Confidence 4 58999999865 43222 22235554 88899999 7777777664
Q ss_pred eccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEee-ccCCcEEEEEccccceeeccccccCCCCCCCC
Q 016185 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 250 (394)
Q Consensus 172 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 250 (394)
..-.|.+|++..|.....-...-......+-|.|+| ++++.... -.+++|-+|.........+..-.....+..+.
T Consensus 165 --G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 165 --GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred --CCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 134699999987765433221112456678899999 88766554 46899999999884222221111111111111
Q ss_pred ccccccceeeeecCCCceEEEEEe--CcEEEEeec-CCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCC
Q 016185 251 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 327 (394)
Q Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (394)
......+|..+ |++|.++.. ...|-+|.+..... ....+.....+...-....|++.+
T Consensus 242 -------------g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g-----~L~~~~~~~teg~~PR~F~i~~~g- 302 (346)
T COG2706 242 -------------GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG-----KLELVGITPTEGQFPRDFNINPSG- 302 (346)
T ss_pred -------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC-----EEEEEEEeccCCcCCccceeCCCC-
Confidence 12233444444 777777643 34677776654321 222333444444446678899999
Q ss_pred cceEEEEeC-CCcEEEEEecCCCceeeEEeccCCccCCeeEEEec
Q 016185 328 YNAAAIGNR-EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 371 (394)
Q Consensus 328 ~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 371 (394)
++|+++.. +..|.+|........+ ..+..........++.|.
T Consensus 303 -~~Liaa~q~sd~i~vf~~d~~TG~L-~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 303 -RFLIAANQKSDNITVFERDKETGRL-TLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred -CEEEEEccCCCcEEEEEEcCCCceE-EecccccCCCCcEEEEEc
Confidence 56666654 4578999887654322 222211222345566654
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.16 E-value=1.8e-07 Score=74.15 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=86.9
Q ss_pred cceEEEEecCCcEEEEEcCCC--ceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEE
Q 016185 48 YFNVFATVGGNRVTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV 125 (394)
Q Consensus 48 ~~~~las~~~d~i~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 125 (394)
+|++||.-.+..|.|-..++. ..+...+... +..-.-.-++|+ ||+. +||.+...|+|+++|+.. ..+..+.
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpk--D~~PQWRkl~WS--pD~t-lLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPK--DPNPQWRKLAWS--PDCT-LLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCC--CCCchheEEEEC--CCCc-EEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 799999988777887776543 2333443222 233344568888 9999 999999999999999864 4444443
Q ss_pred ec-------CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC-----cEEEEee
Q 016185 126 GH-------GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG-----ICILIFA 193 (394)
Q Consensus 126 ~~-------~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~-----~~~~~~~ 193 (394)
.- ...|..+.|.+-.. +.-. ...+++..-+|.++-|-+..+ +....+.
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~----s~~w----------------s~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKK----SAQW----------------SYELLVINYRGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred cccccCCccccceeeeEeecccc----cccc----------------ceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence 21 23455555543110 0000 012222333788877776432 2333333
Q ss_pred ccCCCcccEEEEEecCCCCeeEEeecc
Q 016185 194 GAGGHRNEVLSVDFHPSDIYRIASCGM 220 (394)
Q Consensus 194 ~~~~~~~~i~~~~~~~~~~~~l~s~~~ 220 (394)
-...+...|.++.++| ..++|+.|+.
T Consensus 142 f~~~yp~Gi~~~vy~p-~h~LLlVgG~ 167 (282)
T PF15492_consen 142 FSSHYPHGINSAVYHP-KHRLLLVGGC 167 (282)
T ss_pred ecccCCCceeEEEEcC-CCCEEEEecc
Confidence 2123577999999999 7677777664
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=8.4e-10 Score=97.27 Aligned_cols=239 Identities=13% Similarity=0.231 Sum_probs=156.6
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCe---------------eEEEEEecCCceeEEEEcCCCCcEEEEc
Q 016185 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---------------LHKSFVGHGDSINEIRTQPLKPSLVVSA 147 (394)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 147 (394)
.....+++|. .+.. ++++|+.||.++|..+.+.. .-+++.+|...|.-+.|+. ..+.|.+.
T Consensus 14 nvkL~c~~WN--ke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtS 89 (1189)
T KOG2041|consen 14 NVKLHCAEWN--KESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTS 89 (1189)
T ss_pred CceEEEEEEc--ccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-cccccccc
Confidence 4456788998 6666 99999999999999886532 2356789999999999998 66788888
Q ss_pred eeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEE
Q 016185 148 SKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 227 (394)
Q Consensus 148 ~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iw 227 (394)
.. +|.|.||-+-.|......... ...+-|.+++|+. +|..+.....||.|.+=
T Consensus 90 Dt-------------------------~GlIiVWmlykgsW~EEMiNn-RnKSvV~SmsWn~-dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 90 DT-------------------------SGLIIVWMLYKGSWCEEMINN-RNKSVVVSMSWNL-DGTKICIVYEDGAVIVG 142 (1189)
T ss_pred CC-------------------------CceEEEEeeecccHHHHHhhC-cCccEEEEEEEcC-CCcEEEEEEccCCEEEE
Confidence 88 999999999887644333211 3567789999999 99999999999999887
Q ss_pred EccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCC-CCc-
Q 016185 228 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG-EGT- 303 (394)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~- 303 (394)
.+..... ............+.|+ .+.++.+-..|.+.+||.+..-.... ...
T Consensus 143 svdGNRI------------------------wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~ 198 (1189)
T KOG2041|consen 143 SVDGNRI------------------------WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCE 198 (1189)
T ss_pred eecccee------------------------cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceE
Confidence 7766321 0000111122345555 34566667789999999765421000 000
Q ss_pred ceecccccCCCCCeEEEEEe--------ecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCC
Q 016185 304 ADILQKYPVPECDIWFIKFS--------CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS 375 (394)
Q Consensus 304 ~~~~~~~~~~~~~i~~~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 375 (394)
......+......|-.+.|. |+. ..|+.+...|.+.|-.-.+.....+... + -.+....|+++|.
T Consensus 199 Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr--P~lavcy~nGr~QiMR~eND~~Pvv~dt---g--m~~vgakWnh~G~ 271 (1189)
T KOG2041|consen 199 VNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR--PRLAVCYANGRMQIMRSENDPEPVVVDT---G--MKIVGAKWNHNGA 271 (1189)
T ss_pred EeeeeeecCCCccccceeeccCccccCCCCC--CEEEEEEcCceehhhhhcCCCCCeEEec---c--cEeecceecCCCc
Confidence 00000011111123333332 344 6899999999998875544321122211 2 5788999999999
Q ss_pred EEEEeccC
Q 016185 376 TILSCCED 383 (394)
Q Consensus 376 ~l~s~~~d 383 (394)
.||.++.|
T Consensus 272 vLAvcG~~ 279 (1189)
T KOG2041|consen 272 VLAVCGND 279 (1189)
T ss_pred EEEEccCc
Confidence 99999865
No 283
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.13 E-value=4.2e-09 Score=81.66 Aligned_cols=148 Identities=13% Similarity=0.161 Sum_probs=97.7
Q ss_pred EEEEeecCCeEEEEECCCCe-eEEEEE-ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCc
Q 016185 100 FLVAGGINGIIRVIDVSNEK-LHKSFV-GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDES 177 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (394)
-++++..||.+.+++.+.-. ..+.+. .|.+. .+.+... .++++.++.- ..| ..-+.
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~-~~~~i~s~~~--g~~------------------n~~d~ 160 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICR-HGNSILSGGC--GNW------------------NAQDN 160 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhcccccccc-cccceee-cccEEecCCc--ceE------------------eeccc
Confidence 69999999999999976421 111111 12111 1222222 3344444431 000 01345
Q ss_pred EEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccc
Q 016185 178 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 257 (394)
Q Consensus 178 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (394)
.+.|+++..+.+..-. .....|.+++-+|...+++++|+.||.+-+||.++. ..|
T Consensus 161 ~~a~~~~p~~t~~~~~---~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----------------------~~p 215 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSK---KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----------------------AMP 215 (319)
T ss_pred eeeecccccccccccc---cccccchhhhCCcccccEEEEecCCCeEEEEEcccc----------------------cch
Confidence 6677765443322222 233459999999966778889999999999999993 346
Q ss_pred eeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCC
Q 016185 258 VFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKM 294 (394)
Q Consensus 258 ~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~ 294 (394)
...+..|+..|+.+-|+ ++.|++++.||.+-.||..+
T Consensus 216 ~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 216 VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 77788899999999997 77999999999999999874
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=5.9e-10 Score=98.50 Aligned_cols=224 Identities=20% Similarity=0.361 Sum_probs=153.9
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC-eeEEEEEecCC--ceeEEEEcCCC--CcEEEEceeeeEEeecc
Q 016185 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGD--SINEIRTQPLK--PSLVVSASKVIIISSLS 157 (394)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~--~v~~~~~~~~~--~~~l~s~~~~i~~~~~~ 157 (394)
.+.+..+.+. |.|+ -++.++.-| +.+-|+... .+.+-+. |.. .|....|+|.. ...+++.+
T Consensus 24 ~~~~~a~si~--p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts--------- 89 (1081)
T KOG0309|consen 24 DGGFNAVSIN--PSGR-DIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTS--------- 89 (1081)
T ss_pred cCcccceeec--cccc-hhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecC---------
Confidence 3455556666 8888 677777776 445576543 3333333 332 46678888742 23455555
Q ss_pred ceeeeeeeccceeeeccCCcEEEEEecCC--cEE-EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccce
Q 016185 158 LICLLLFIRSNCLRVGQDESVRLWNVQTG--ICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234 (394)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~vwd~~~~--~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 234 (394)
...-.+|++... +.+ ..+. +|...|+.+.|+|+....+++++.|-.+..||+++.
T Consensus 90 -----------------~qkaiiwnlA~ss~~aIef~lh---ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp-- 147 (1081)
T KOG0309|consen 90 -----------------NQKAIIWNLAKSSSNAIEFVLH---GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP-- 147 (1081)
T ss_pred -----------------cchhhhhhhhcCCccceEEEEe---cCccceeccccCCCCCcceeeccccccceeeeccCC--
Confidence 455668887543 223 2333 899999999999989999999999999999999994
Q ss_pred eeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC
Q 016185 235 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV 312 (394)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 312 (394)
..|+............|.|+ ...+++.+....|++||++.+.. ++..+++
T Consensus 148 --------------------~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~--------pl~s~K~ 199 (1081)
T KOG0309|consen 148 --------------------HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST--------PLCSLKG 199 (1081)
T ss_pred --------------------CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc--------ceEEecc
Confidence 34666666666777788887 33444557788899999998764 5667777
Q ss_pred CCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCC
Q 016185 313 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 374 (394)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 374 (394)
|...++.+.|..-.. ..+.+.+.|++|++||............. ...+|..-++-|-|
T Consensus 200 ~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vt---t~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVT---TNFPIWRGRYLPFG 257 (1081)
T ss_pred cceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceecc---ccCcceeccccccC
Confidence 888888888876654 47889999999999999865322222222 22456666666643
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2.6e-10 Score=97.53 Aligned_cols=205 Identities=14% Similarity=0.221 Sum_probs=140.2
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC-------CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEE
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIII 153 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~ 153 (394)
+|.+.|..++-- .+.+ -+++++.|.+|++|.++. ..+..+++.|+.+|.++.|.. +.+.++++
T Consensus 733 GH~~~iRai~Ai--dNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc------ 802 (1034)
T KOG4190|consen 733 GHQEKIRAIAAI--DNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC------ 802 (1034)
T ss_pred CcHHHhHHHHhc--cccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec------
Confidence 677777666532 2223 689999999999999863 246778889999999999998 66666665
Q ss_pred eeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccC--CCcccEEEEEecCCCCeeEEe-eccCCcEEEEEcc
Q 016185 154 SSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAG--GHRNEVLSVDFHPSDIYRIAS-CGMDNTVKIWSMK 230 (394)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~s-~~~dg~v~iwd~~ 230 (394)
||.|.+||.--++.+....... +..+.|.|+.-- +...++. ++...+|+++|.+
T Consensus 803 ---------------------D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 803 ---------------------DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred ---------------------cCcceeecccccchhHhhhcCcccCCCceeEecccC--cchheeeeccchhhheeeecc
Confidence 7899999988777665433211 122334444321 3344444 4788999999999
Q ss_pred ccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecc
Q 016185 231 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ 308 (394)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 308 (394)
...-..+ ..+....+....+.+++.. |+.++.+-.+|.|.+.|.++++ .+.
T Consensus 860 sce~~~E------------------~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~---------vIN 912 (1034)
T KOG4190|consen 860 SCEWTCE------------------LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK---------VIN 912 (1034)
T ss_pred cccceee------------------EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc---------eec
Confidence 8432111 1122233444567777775 9999999999999999999987 456
Q ss_pred cccCCCCCeEEEEEeecCCcceEEEEeCCCcEEE-EEecCC
Q 016185 309 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV-WELQSS 348 (394)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~ 348 (394)
.++..++....++- |.. ..++....|.++.+ |....+
T Consensus 913 swrpmecdllqlaa-psd--q~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 913 SWRPMECDLLQLAA-PSD--QALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred cCCcccchhhhhcC-chh--HHHHhhcccceeEeeehhcCC
Confidence 66666665555543 444 36777788888888 887666
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.12 E-value=2.8e-07 Score=88.80 Aligned_cols=311 Identities=12% Similarity=0.091 Sum_probs=167.6
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEE----EcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVY----QCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
.+.|.++.|-+ +.+-+..+..+| |.+. +..+.. +.... .-+..|.+++|+ ||+. +|+....+
T Consensus 75 ~~~ivs~~yl~----d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG-----~vd~GI~a~~WS--PD~E-lla~vT~~ 141 (928)
T PF04762_consen 75 NDKIVSFQYLA----DSESLCIALASGDIILVREDPDPDEDE-IEIVG-----SVDSGILAASWS--PDEE-LLALVTGE 141 (928)
T ss_pred CCcEEEEEecc----CCCcEEEEECCceEEEEEccCCCCCce-eEEEE-----EEcCcEEEEEEC--CCcC-EEEEEeCC
Confidence 46799999988 445455555555 6666 333222 22222 346689999999 9999 88888888
Q ss_pred CeEEEEECCCCeeEEEEEecC-----CceeEEEEcCCCCcEEEEcee-----------------eeEEeeccceeeeeee
Q 016185 108 GIIRVIDVSNEKLHKSFVGHG-----DSINEIRTQPLKPSLVVSASK-----------------VIIISSLSLICLLLFI 165 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~~-----------------~i~~~~~~~~~~~~~~ 165 (394)
+++.+.+ .+..++....-+. ..-..+-|=....++=-++++ .+- ++-......+-.
T Consensus 142 ~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 142 GNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG 219 (928)
T ss_pred CEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence 8888765 2333332221110 001111111100000000000 000 112222222233
Q ss_pred ccceeeec-------cCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeecc---CCcEEEEEcccccee
Q 016185 166 RSNCLRVG-------QDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTY 235 (394)
Q Consensus 166 ~~~~~~~~-------~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~ 235 (394)
++.+++.+ .-..++||+-+ |.....-. .-.+--.+++|.| .|+++++... ...|.+|.-...+.
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE---~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrh- 293 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE---PVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRH- 293 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc---cCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEe-
Confidence 33333322 13679999964 65444433 2223335789999 9998888764 34566665444211
Q ss_pred eccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCC
Q 016185 236 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 313 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
.+. ..........|..+.|+ ++.|+....|. |.+|-..+..-. .-+.+...
T Consensus 294 geF-------------------~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWY-------LKqei~~~ 346 (928)
T PF04762_consen 294 GEF-------------------TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWY-------LKQEIRFS 346 (928)
T ss_pred eeE-------------------ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEE-------EEEEEEcc
Confidence 100 00112345568899998 66777765444 999998876421 11222221
Q ss_pred -CCCeEEEEEeecCCcceEEEEeCCCcEEEEEec----CC----------------CceeeEEecc-----------CCc
Q 016185 314 -ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ----SS----------------PPVLIARLSH-----------AQS 361 (394)
Q Consensus 314 -~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~----------------~~~~~~~~~~-----------~~~ 361 (394)
...+..+.|+|... ..|...+.+|.+..+++. .+ ....+..+.. -..
T Consensus 347 ~~~~~~~~~Wdpe~p-~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~ 425 (928)
T PF04762_consen 347 SSESVNFVKWDPEKP-LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL 425 (928)
T ss_pred CCCCCCceEECCCCC-CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence 22344588999765 466666666776655542 11 1111111110 013
Q ss_pred cCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 362 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 362 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
..+|.+++|++++..+|+-..||.|.+|...
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 4789999999999889999999999999853
No 287
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.11 E-value=2.7e-09 Score=96.62 Aligned_cols=181 Identities=13% Similarity=0.162 Sum_probs=135.8
Q ss_pred ceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCC
Q 016185 168 NCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 247 (394)
Q Consensus 168 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 247 (394)
.++-|+-...+..+|+++.+..+... -....|.-+.. +++.+.+|...|+|.+-|.++
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~---v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s---------------- 206 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTN---VSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNS---------------- 206 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeee---ccCCceEEEEe---cCcEEEeecccceEEeecCCc----------------
Confidence 34444447888899999888777665 23334554443 668899999999999999999
Q ss_pred CCCccccccceeeeecCCCceEEEEEeCcEEEEeec---------CCeEEEecCCCCCCCCCCCcceecccccCCCCCeE
Q 016185 248 KFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSV---------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 318 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 318 (394)
-..+..+..|.+.|..+...|+.|++++. |..|+|||++..+. +..+..+..+ .
T Consensus 207 -------~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---------l~PI~~~~~P-~ 269 (1118)
T KOG1275|consen 207 -------FETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---------LSPIQFPYGP-Q 269 (1118)
T ss_pred -------CceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc---------cCCcccccCc-h
Confidence 45688999999999999999999999986 55689999998763 3333333332 5
Q ss_pred EEEEeecCCcceEEEEeCCCcEEEEEecCCC-c-eeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 319 FIKFSCDFHYNAAAIGNREGKIFVWELQSSP-P-VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
.+.|.|.-. ..+++.+..|...+-|..+-. + .-+..+. .....+.++++|++++.||.|..+|.|.+|-
T Consensus 270 flrf~Psl~-t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 270 FLRFHPSLT-TRLAVTSQSGQFQFVDTATLSNPPAGVKMVN--PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhccccc-ceEEEEecccceeeccccccCCCccceeEEc--cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 678888876 578888999999999943321 1 1222222 3345699999999999999999999999996
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.11 E-value=3.4e-07 Score=77.46 Aligned_cols=212 Identities=13% Similarity=0.061 Sum_probs=146.5
Q ss_pred cCCCCcEEEEeecCCeEEEEECCCCeeEEEEE-e-----------cCCceeEEE-EcCCCCcEEEEceeeeEEeecccee
Q 016185 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-G-----------HGDSINEIR-TQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 94 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~-----------~~~~v~~~~-~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
+.||+.+++.. .|.|.+||..+.+.. .+. + ...+..-+. |++.++.+++..|
T Consensus 275 nsDGkrIvFq~--~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS------------ 339 (668)
T COG4946 275 NSDGKRIVFQN--AGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS------------ 339 (668)
T ss_pred CCCCcEEEEec--CCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe------------
Confidence 37898455444 477999998765432 221 1 011122222 5565778888888
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC-cEEEEEccccceeeccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKS 239 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~ 239 (394)
.|...+.+...+-.++. ++...|.-..+.. +++-++.|..|| .+-++|.++++
T Consensus 340 --------------RGkaFi~~~~~~~~iqv-----~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e------ 393 (668)
T COG4946 340 --------------RGKAFIMRPWDGYSIQV-----GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE------ 393 (668)
T ss_pred --------------cCcEEEECCCCCeeEEc-----CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce------
Confidence 58888887766655543 5777788888877 777899999999 99999999843
Q ss_pred cccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCe
Q 016185 240 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI 317 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i 317 (394)
+..+...-+.|.++..+ |++++.+.....|-+.|+.++.. ...-+....-|
T Consensus 394 ------------------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv---------~~idkS~~~lI 446 (668)
T COG4946 394 ------------------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV---------RLIDKSEYGLI 446 (668)
T ss_pred ------------------EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe---------eEeccccccee
Confidence 44555566778888876 78899998899999999999862 11223345678
Q ss_pred EEEEEeecCCcceEEEEeCCC----cEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEe
Q 016185 318 WFIKFSCDFHYNAAAIGNREG----KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 380 (394)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 380 (394)
+.+.|+|++ +++|-+--+| .|+++|+..++ +.... ...+.=.+-+|.||+++|.--
T Consensus 447 tdf~~~~ns--r~iAYafP~gy~tq~Iklydm~~~K---iy~vT--T~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 447 TDFDWHPNS--RWIAYAFPEGYYTQSIKLYDMDGGK---IYDVT--TPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEEEEcCCc--eeEEEecCcceeeeeEEEEecCCCe---EEEec--CCcccccCcccCCCCcEEEEE
Confidence 999999999 6888876655 68999999874 22222 111223345788999988654
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.11 E-value=3.2e-09 Score=87.30 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=104.8
Q ss_pred cCCCCcEEEEeecCCeEEEEECCCCee----EEEEEecCCceeEEEEcCCCCcEEE--EceeeeEEeeccceeeeeeecc
Q 016185 94 NVDGIPFLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVV--SASKVIIISSLSLICLLLFIRS 167 (394)
Q Consensus 94 ~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~--s~~~~i~~~~~~~~~~~~~~~~ 167 (394)
++.++ ++|.+..+....+++...... ...... ...-+++.|..++...++ ..++
T Consensus 71 s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD------------------ 130 (390)
T KOG3914|consen 71 SDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGD------------------ 130 (390)
T ss_pred CCCce-EEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCC------------------
Confidence 36677 888888888877777654332 222221 222344444442323332 2333
Q ss_pred ceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCC
Q 016185 168 NCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 247 (394)
Q Consensus 168 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 247 (394)
...+.+|....+.....+ +|-..++.++++| |+..++++..|..|++-....
T Consensus 131 -------~~~~di~s~~~~~~~~~l----GhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa---------------- 182 (390)
T KOG3914|consen 131 -------VYSFDILSADSGRCEPIL----GHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA---------------- 182 (390)
T ss_pred -------ceeeeeecccccCcchhh----hhhhhhheeeecC-CCCEEEEecCCceEEEEecCc----------------
Confidence 566777776655555444 7999999999999 889999999999999988776
Q ss_pred CCCcccccccee-eeecCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCC
Q 016185 248 KFPTKYVQFPVF-IASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQS 298 (394)
Q Consensus 248 ~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~ 298 (394)
...+. ...+|...|..++.. ++.|++++.|+++++||+.+++..
T Consensus 183 -------~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 183 -------TFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -------ccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcc
Confidence 22233 335699999999987 667899999999999999999853
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.10 E-value=1.2e-07 Score=80.62 Aligned_cols=278 Identities=11% Similarity=0.111 Sum_probs=172.7
Q ss_pred cceeEEEEEeeCCCcceEEEEecC----------------CcEEEEEcCCCceeEEeeecccCCcccceE-EEEEEEcCC
Q 016185 34 RPLYAVVFNFIDSRYFNVFATVGG----------------NRVTVYQCLEGGVIAALQSYVDEDKEESFY-TVSWACNVD 96 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las~~~----------------d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~ 96 (394)
..|.-+.||| .+++|.+=+. +.+.+||+.+|..+..+.....+. ... .+.|+ -+
T Consensus 72 ~~V~~~~fSP----~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~---~~Wp~~k~s--~~ 142 (561)
T COG5354 72 PDVKYLDFSP----NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY---LGWPVLKFS--ID 142 (561)
T ss_pred CCceecccCc----ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc---cccceeeee--ec
Confidence 4688899999 7899988652 247899999999888887543321 122 46676 55
Q ss_pred CCcEEEEeecCCeEEEEECCCCee----EEEEEecCCceeEEEEcCC-CCcEEEEceeeeEEeeccceeeeeeeccceee
Q 016185 97 GIPFLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPL-KPSLVVSASKVIIISSLSLICLLLFIRSNCLR 171 (394)
Q Consensus 97 ~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~ 171 (394)
.+ ++|-- ....+.|+++ ++.. .+.++ ...|....|+|. ++..|+.-.. =.
T Consensus 143 D~-y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tP--------------------Ek 197 (561)
T COG5354 143 DK-YVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTP--------------------EK 197 (561)
T ss_pred ch-hhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEcc--------------------cc
Confidence 65 55433 3457999997 3321 22222 245788889984 2233332110 00
Q ss_pred eccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeec-----------cCCcEEEEEccccceeecccc
Q 016185 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-----------MDNTVKIWSMKEFWTYVEKSF 240 (394)
Q Consensus 172 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~-----------~dg~v~iwd~~~~~~~~~~~~ 240 (394)
.+..+++++|.+..+..+..-. -....=..+.|++ .+++|+.-- ....+.|++++..
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~---lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-------- 265 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKN---LFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-------- 265 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeee---eEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeeccc--------
Confidence 1228899999998666554332 1222234677887 666554321 1245667766641
Q ss_pred ccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEE--EeecCCeEEEecCCCCCCCCCCCcceecccccCCCCC
Q 016185 241 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL--SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 316 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~--~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
.+.....-.++|....|. ++.++ +|-.+-.+.++|++..- .+..++..
T Consensus 266 ----------------~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl------------~~~~Pe~~ 317 (561)
T COG5354 266 ----------------SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL------------RFYFPEQK 317 (561)
T ss_pred ----------------ccceeccccccceeeeecccCCceeEEecccccceeecccccce------------EEecCCcc
Confidence 122222457889999995 44433 44578899999998652 22233334
Q ss_pred eEEEEEeecCCcceEEEEeC---CCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEec------cCCeEE
Q 016185 317 IWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC------EDGAIW 387 (394)
Q Consensus 317 i~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~ 387 (394)
-+.+.|+|.. ++++.++- .|.+.+||....- .....+. + ...+-+.|+||++++.+.. .|..|.
T Consensus 318 rNT~~fsp~~--r~il~agF~nl~gni~i~~~~~rf-~~~~~~~--~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~ 390 (561)
T COG5354 318 RNTIFFSPHE--RYILFAGFDNLQGNIEIFDPAGRF-KVAGAFN--G--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIK 390 (561)
T ss_pred cccccccCcc--cEEEEecCCccccceEEeccCCce-EEEEEee--c--CCceEeeccCCceEEEecCCCcccccCcceE
Confidence 4567899999 56776554 4789999987763 3443554 2 2344578999999888663 478899
Q ss_pred EEEcC
Q 016185 388 RWDAI 392 (394)
Q Consensus 388 iwd~~ 392 (394)
|||+.
T Consensus 391 l~~v~ 395 (561)
T COG5354 391 LWDVY 395 (561)
T ss_pred EEEec
Confidence 99985
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=3.2e-10 Score=91.26 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=123.0
Q ss_pred eeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCC
Q 016185 170 LRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 249 (394)
Q Consensus 170 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 249 (394)
++.|.+..|-+-|+++|.... | ...+.|.++.|.. .++++..|+.+|.|..+|++...+-
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f----~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG-------------- 287 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-F----QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQG-------------- 287 (425)
T ss_pred ecccccceeEEEEeecccccc-c----ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccC--------------
Confidence 566668888999998875433 3 2577899999997 8899999999999999999984210
Q ss_pred CccccccceeeeecCCCceEEEEE---eCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecC
Q 016185 250 PTKYVQFPVFIASVHSNYVDCNRW---LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 326 (394)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 326 (394)
...+ ...-.|...|+++.. ++++|++.+.+|+|++||++.-+. ..-+..+.+|...-..+-+.-+.
T Consensus 288 ----~~~~-a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~~a~l~~~v~~ 356 (425)
T KOG2695|consen 288 ----NGWC-AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNLSAYLPAHVKE 356 (425)
T ss_pred ----CCcc-eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccccccccccccc
Confidence 0112 233458888888654 588999999999999999997652 11377788887665556666555
Q ss_pred CcceEEEEeCCCcEEEEEecCCCceeeEEec--cCCccCCeeEEEecc
Q 016185 327 HYNAAAIGNREGKIFVWELQSSPPVLIARLS--HAQSKSPIRQTAMSY 372 (394)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~v~~~~~s~ 372 (394)
+...+++++.|...|||.++.+. ++.+++ .......+.+++|..
T Consensus 357 eeg~I~s~GdDcytRiWsl~~gh--Ll~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 357 EEGSIFSVGDDCYTRIWSLDSGH--LLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ccceEEEccCeeEEEEEecccCc--eeeccCCCCccccccccceehhc
Confidence 54688999999999999999985 455554 222333455666653
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.09 E-value=3.7e-08 Score=76.93 Aligned_cols=241 Identities=12% Similarity=0.036 Sum_probs=147.4
Q ss_pred eEEEEecCCc-EEEEEcCCCcee-EEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec
Q 016185 50 NVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (394)
Q Consensus 50 ~~las~~~d~-i~vw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 127 (394)
.+||.|+..+ ..+|.+.+.+.. .... .+...|.-+.=. -+....+..++.|.++++.+++-+.....+.-.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd-----~snn~v~~~~r~--cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCD-----VSNNDVTLVKRY--CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeec-----ccccchhhhhhh--cccccceeeccCCcceeEEEEecCcccceeecc
Confidence 4677777766 999999866542 2332 233333222111 112224677788888888887644332222212
Q ss_pred CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC-cEEEEeeccCCCcccEEEEE
Q 016185 128 GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVD 206 (394)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~i~~~~ 206 (394)
.-.+.++++++ ++.++++.++ ...|..|.+... +.+..+.. ...++.-.+..
T Consensus 158 ~~~~ns~~~sn-d~~~~~~Vgd-------------------------s~~Vf~y~id~~sey~~~~~~-a~t~D~gF~~S 210 (344)
T KOG4532|consen 158 NLTQNSLHYSN-DPSWGSSVGD-------------------------SRRVFRYAIDDESEYIENIYE-APTSDHGFYNS 210 (344)
T ss_pred ccceeeeEEcC-CCceEEEecC-------------------------CCcceEEEeCCccceeeeeEe-cccCCCceeee
Confidence 22378999999 8899999888 889999988653 22222221 13444556788
Q ss_pred ecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe----CcEEEEee
Q 016185 207 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKS 282 (394)
Q Consensus 207 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~ 282 (394)
|+. ....++++..||++.|||++...... ......-..|.+.++.+.|+ -++|+..-
T Consensus 211 ~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm------------------~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 211 FSE-NDLQFAVVFQDGTCAIYDVRNMATPM------------------AEISSTRPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred ecc-CcceEEEEecCCcEEEEEecccccch------------------hhhcccCCCCCCceEEEEecCCCcceEEEEec
Confidence 998 88899999999999999999832211 11122334588999999998 24666666
Q ss_pred cCCeEEEecCCCCCCCCCCCcceecccccCCC-CCeEEEEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 283 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 283 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
.-+.+.+.|+++..........+ .++..|. ..|....|+.++. -+.+.+++ .+.-|++.+.
T Consensus 272 hfs~~hv~D~R~~~~~q~I~i~~--d~~~~~~tq~ifgt~f~~~n~--s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 272 HFSRVHVVDTRNYVNHQVIVIPD--DVERKHNTQHIFGTNFNNENE--SNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred CcceEEEEEcccCceeeEEecCc--cccccccccccccccccCCCc--ccccccch-hhheeecccc
Confidence 77899999999886321111100 1122222 3477777887774 33333332 3556666554
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.05 E-value=1.2e-06 Score=71.65 Aligned_cols=260 Identities=17% Similarity=0.133 Sum_probs=158.1
Q ss_pred eeEEEEEeeCCCcceEEEEecCCc--EEEEEcCCCceeEEeeecccCCcccceEE-EEEEEcCCCCcEEEEe-----ecC
Q 016185 36 LYAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYT-VSWACNVDGIPFLVAG-----GIN 107 (394)
Q Consensus 36 v~~i~~sp~~~~~~~~las~~~d~--i~vw~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~s~-----~~d 107 (394)
-..++.+|. .+..++.+-.-+ ..+||..+++.+..+..... .-.+. -.| ++||+ +|++. ...
T Consensus 7 gH~~a~~p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g----RHFyGHg~f--s~dG~-~LytTEnd~~~g~ 76 (305)
T PF07433_consen 7 GHGVAAHPT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG----RHFYGHGVF--SPDGR-LLYTTENDYETGR 76 (305)
T ss_pred ccceeeCCC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC----CEEecCEEE--cCCCC-EEEEeccccCCCc
Confidence 345677772 456666666544 89999999998777663211 11111 344 49999 77775 345
Q ss_pred CeEEEEECC-CCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC
Q 016185 108 GIIRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG 186 (394)
Q Consensus 108 g~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~ 186 (394)
|.|-|||.. +-+.+.++..|.-.-..+.+.|++..+++.-+. | .+--.....++-...++.++...|..+|
T Consensus 77 G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG-I-------~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 77 GVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG-I-------ETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred EEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC-C-------ccCcccCceecChhhcCCceEEEecCCC
Confidence 899999998 567888888887777889999944344444332 1 0000111235566667888889999999
Q ss_pred cEEEEeecc-CCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 187 ICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 187 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
+.+...... .-|+..|.-+++.+ ++..++..-..| .. ..
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg-------~~--------------------------------~~ 188 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQG-------DP--------------------------------GD 188 (305)
T ss_pred ceeeeeecCccccccceeeEEecC-CCcEEEEEecCC-------CC--------------------------------Cc
Confidence 987775421 23677899999998 766444433322 10 00
Q ss_pred CceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 266 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 266 ~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
. ..+++.-..++.+...+..... ...+ ..-+-+|++++++. .+.+|+-.-+.+.+||.
T Consensus 189 ~--------~PLva~~~~g~~~~~~~~p~~~----------~~~l---~~Y~gSIa~~~~g~-~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 189 A--------PPLVALHRRGGALRLLPAPEEQ----------WRRL---NGYIGSIAADRDGR-LIAVTSPRGGRVAVWDA 246 (305)
T ss_pred c--------CCeEEEEcCCCcceeccCChHH----------HHhh---CCceEEEEEeCCCC-EEEEECCCCCEEEEEEC
Confidence 0 1233333444445555554321 1122 23467899999984 24455667788999999
Q ss_pred cCCCceeeEEeccCCccCCeeEEEeccCCCEEEEecc
Q 016185 346 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE 382 (394)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 382 (394)
.+++ .+..... ..+..++-.+++ ++++.+.
T Consensus 247 ~tg~--~~~~~~l----~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 247 ATGR--LLGSVPL----PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CCCC--Eeecccc----CceeeeeecCCc-eEEeCCC
Confidence 9985 3333321 246677777666 6665544
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.01 E-value=8.5e-09 Score=82.14 Aligned_cols=251 Identities=18% Similarity=0.274 Sum_probs=151.3
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC-----eeEEEEEecC------------CceeEEEEcCCCC--cE
Q 016185 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----KLHKSFVGHG------------DSINEIRTQPLKP--SL 143 (394)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~------------~~v~~~~~~~~~~--~~ 143 (394)
.+.|+++.|. ..|. +|++|...|.|.+|.-... +....+++|. ..|..+.|..+.+ .+
T Consensus 26 ad~ItaVefd--~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFD--ETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEec--cccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 4456666665 7788 9999999999999975432 2233455553 3577788865332 34
Q ss_pred EEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc------------------------------------
Q 016185 144 VVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI------------------------------------ 187 (394)
Q Consensus 144 l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~------------------------------------ 187 (394)
|+++. |.+|++|.+....
T Consensus 103 LlstN--------------------------dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd 156 (460)
T COG5170 103 LLSTN--------------------------DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD 156 (460)
T ss_pred EEecC--------------------------CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc
Confidence 44444 5666666553220
Q ss_pred ------EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeee
Q 016185 188 ------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 261 (394)
Q Consensus 188 ------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (394)
+.+.+. ..|.--|.++.++. +...++++ .|-.|.+|++.-... ...+..+
T Consensus 157 ~iiaa~p~rvya--NaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~--------------------sFnIVDi 212 (460)
T COG5170 157 EIIAAKPCRVYA--NAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDG--------------------SFNIVDI 212 (460)
T ss_pred eEEEeccceecc--ccceeEeeeeeecC-chheeeec-cceeeeeccccccCC--------------------ceEEEec
Confidence 001110 25777789999997 77766665 578899999876221 1112223
Q ss_pred ecCC-----CceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCC-----CCcce--ecccccCCCCCeEEEEEeecC
Q 016185 262 SVHS-----NYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPG-----EGTAD--ILQKYPVPECDIWFIKFSCDF 326 (394)
Q Consensus 262 ~~~~-----~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~-----~~~~~--~~~~~~~~~~~i~~~~~~~~~ 326 (394)
+.|. ..|++..|+ ...+.-.+..|.|++-|++....... ..... -..-+..-...|..+.|++++
T Consensus 213 KP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng 292 (460)
T COG5170 213 KPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG 292 (460)
T ss_pred cCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC
Confidence 3332 345666666 44666678899999999985432100 00000 011122234578899999999
Q ss_pred CcceEEEEeCCCcEEEEEecCCCceeeEEec-cCC---------ccCCe---eEEEeccCCCEEEEeccCCeEEEEE
Q 016185 327 HYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQ---------SKSPI---RQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~---------~~~~v---~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
+++++-. =-+|++||++..+ .++.+++ +.. ....| ..+.||-|.+.+.+|+.....-++-
T Consensus 293 --ryIlsRd-yltvkiwDvnm~k-~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 293 --RYILSRD-YLTVKIWDVNMAK-NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred --cEEEEec-cceEEEEeccccc-CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 5676655 4689999998754 3455553 100 01222 2367888888888888877766665
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=1.8e-09 Score=87.03 Aligned_cols=154 Identities=14% Similarity=0.233 Sum_probs=118.1
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccc
Q 016185 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSN 168 (394)
Q Consensus 89 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~ 168 (394)
++|+.+-.|- . ++.+.+..|-+-|++++- .+.|. ..+.|.++.|.. ..+++..|..
T Consensus 217 CawSlni~gy-h-fs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~-s~nLv~~GcR------------------- 272 (425)
T KOG2695|consen 217 CAWSLNIMGY-H-FSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAG-SDNLVFNGCR------------------- 272 (425)
T ss_pred hhhhhcccee-e-ecccccceeEEEEeeccc-ccccc-cchhHHHHHhcc-cCCeeEeccc-------------------
Confidence 4677665564 4 666667778888887763 33444 566788899987 6789999999
Q ss_pred eeeeccCCcEEEEEecCC-----cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccC
Q 016185 169 CLRVGQDESVRLWNVQTG-----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 243 (394)
Q Consensus 169 ~~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 243 (394)
.|.|..+|++.+ .+...+. |...|+++..-..++..|++.+.+|+|++||++..+.
T Consensus 273 ------ngeI~~iDLR~rnqG~~~~a~rly----h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--------- 333 (425)
T KOG2695|consen 273 ------NGEIFVIDLRCRNQGNGWCAQRLY----HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--------- 333 (425)
T ss_pred ------CCcEEEEEeeecccCCCcceEEEE----cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc---------
Confidence 999999999864 4566665 9999999988765778899999999999999998442
Q ss_pred CCCCCCCccccccceeeeecCCCceEEEEEe----CcEEEEeecCCeEEEecCCCCC
Q 016185 244 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKE 296 (394)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~dg~i~~~d~~~~~ 296 (394)
...+...++|-+.-.-+-+. ...+++++.|-..++|.++.+.
T Consensus 334 -----------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 334 -----------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred -----------ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 23467777877655544443 5688889999999999999886
No 296
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.99 E-value=5.5e-07 Score=79.47 Aligned_cols=230 Identities=12% Similarity=0.011 Sum_probs=131.1
Q ss_pred CCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 97 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
+. .+++++.+|.|..+|..+++.+............... ++..++.++. ++
T Consensus 65 ~~-~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~-------------------------~g 115 (377)
T TIGR03300 65 GG-KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTE-------------------------KG 115 (377)
T ss_pred CC-EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcC-------------------------CC
Confidence 44 7888889999999999999988877644322122222 2344555555 99
Q ss_pred cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccc
Q 016185 177 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256 (394)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (394)
.+..+|..+|+.+.... ....+.+.-.. .+..++.++.+|.+..||.++++..-+.... .
T Consensus 116 ~l~ald~~tG~~~W~~~----~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~--------------~ 175 (377)
T TIGR03300 116 EVIALDAEDGKELWRAK----LSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRV--------------T 175 (377)
T ss_pred EEEEEECCCCcEeeeec----cCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccC--------------C
Confidence 99999999999887765 22333221111 2335666778999999999886532221100 0
Q ss_pred ceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCC--CCeEEEEEee--cCCcceEE
Q 016185 257 PVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWFIKFSC--DFHYNAAA 332 (394)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~~~l~ 332 (394)
+........ +....++.++.+..++.+..+|+++++..-... ........ .....+.-+| .+ ..++
T Consensus 176 ~~~~~~~~~----sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~----~~~~~g~~~~~~~~~~~~~p~~~~--~~vy 245 (377)
T TIGR03300 176 PALTLRGSA----SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR----VALPKGRTELERLVDVDGDPVVDG--GQVY 245 (377)
T ss_pred CceeecCCC----CCEEECCEEEEECCCCEEEEEEccCCCEeeeec----cccCCCCCchhhhhccCCccEEEC--CEEE
Confidence 000000001 111225577788888999999998876311000 00000000 0000000011 12 3677
Q ss_pred EEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 333 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+++.+|.++.||..+++. +....... ..... .++..++.++.||.|+.+|..+
T Consensus 246 ~~~~~g~l~a~d~~tG~~--~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGRV--LWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred EEEcCCEEEEEECCCCcE--EEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 788899999999998853 33332111 11122 2466788888899999998754
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.97 E-value=1.3e-06 Score=69.39 Aligned_cols=204 Identities=13% Similarity=0.164 Sum_probs=119.6
Q ss_pred ccceeeeccCCcEEEEEecCC--cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccC
Q 016185 166 RSNCLRVGQDESVRLWNVQTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 243 (394)
Q Consensus 166 ~~~~~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 243 (394)
++.+++.-.|..|.|-..+.. ..+.....++.....-+.++|+| |+.+|+.+...|+|++||+..........
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I~p---- 82 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVIPP---- 82 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEcCc----
Confidence 344444444788877765543 23333332223444567899999 99999999999999999998633211100
Q ss_pred CCCCCCCccccccceeeeecCCCceEEEEEe--------CcEEEEeecCCeEEEecCCCCCCCCCCCcceeccc--ccC-
Q 016185 244 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK--YPV- 312 (394)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~--~~~- 312 (394)
.... ...-...|..+.|. ...|++-..+|.++-|-+..+... ....... +..
T Consensus 83 --~~~~-----------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q----~y~e~hsfsf~~~ 145 (282)
T PF15492_consen 83 --AMSF-----------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ----GYQENHSFSFSSH 145 (282)
T ss_pred --cccc-----------CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC----cceeeEEEEeccc
Confidence 0000 00112345555553 124555577777777765332110 0111122 222
Q ss_pred CCCCeEEEEEeecCCcceEEEEeC-CC----------cEEEEEecCCCceee------------------EEec------
Q 016185 313 PECDIWFIKFSCDFHYNAAAIGNR-EG----------KIFVWELQSSPPVLI------------------ARLS------ 357 (394)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~l~~~~~-dg----------~i~iwd~~~~~~~~~------------------~~~~------ 357 (394)
....|.++.++|.. ++|++|+. .. -+.-|.+-++.|-.. .++.
T Consensus 146 yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 146 YPHGINSAVYHPKH--RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred CCCceeEEEEcCCC--CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence 35689999999998 45655542 21 366777654432111 0000
Q ss_pred -cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 358 -HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 358 -~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
.......|..|..||||+.||+...+|.|.+|++-.
T Consensus 224 ~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 224 RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 012346788899999999999999999999999853
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.96 E-value=1.4e-06 Score=77.35 Aligned_cols=261 Identities=11% Similarity=0.084 Sum_probs=144.4
Q ss_pred EEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCC
Q 016185 51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (394)
Q Consensus 51 ~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 129 (394)
.++.++.++ +.-+|..+|+.+-..+.. ..+.+--.. .++ .++.+..+|.+.-+|.++|+.+..+.....
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~------~~~~ssP~v--~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVA------GEALSRPVV--SDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCC------CceecCCEE--ECC--EEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 344455555 999999999876554421 122111111 133 577788899999999999999888764311
Q ss_pred ceeEEE--EcCC-CCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCC-cc---cE
Q 016185 130 SINEIR--TQPL-KPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGH-RN---EV 202 (394)
Q Consensus 130 ~v~~~~--~~~~-~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~---~i 202 (394)
.+ .+. -+|. ....++.++. ++.+..+|..+|+........... .. ..
T Consensus 192 ~~-~~~~~~sP~v~~~~v~~~~~-------------------------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 192 SL-TLRGESAPATAFGGAIVGGD-------------------------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred cc-cccCCCCCEEECCEEEEEcC-------------------------CCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 11 000 0110 0112333333 899999999988876654310000 00 01
Q ss_pred EEEEecC-CCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEe
Q 016185 203 LSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 281 (394)
Q Consensus 203 ~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 281 (394)
..+...| -.+..++.++.+|.+..+|..+++..-+... .....+...++.++.+
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-------------------------~~~~~~~~~~~~vy~~ 300 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-------------------------GSVNDFAVDGGRIYLV 300 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-------------------------CCccCcEEECCEEEEE
Confidence 1111112 0123466677889999999998653221100 0011223347788888
Q ss_pred ecCCeEEEecCCCCCCCCCCCcceecccccC-CCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCC
Q 016185 282 SVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 360 (394)
Q Consensus 282 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (394)
+.+|.+..+|..+++. +-+... .......... .+ ..++.++.+|.|+..|..+++ .+.+.+.
T Consensus 301 ~~~g~l~ald~~tG~~---------~W~~~~~~~~~~~sp~v-~~---g~l~v~~~~G~l~~ld~~tG~--~~~~~~~-- 363 (394)
T PRK11138 301 DQNDRVYALDTRGGVE---------LWSQSDLLHRLLTAPVL-YN---GYLVVGDSEGYLHWINREDGR--FVAQQKV-- 363 (394)
T ss_pred cCCCeEEEEECCCCcE---------EEcccccCCCcccCCEE-EC---CEEEEEeCCCEEEEEECCCCC--EEEEEEc--
Confidence 8999999999988752 111110 0001111112 13 368889999999999999985 3444331
Q ss_pred ccCCeeE-EEeccCCCEEEEeccCCeEEEEEc
Q 016185 361 SKSPIRQ-TAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 361 ~~~~v~~-~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
....+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 364 ~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 364 DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 1112221 122 2457888899999998764
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.94 E-value=2.8e-08 Score=90.31 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=133.9
Q ss_pred EEEEecC-CcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCC
Q 016185 51 VFATVGG-NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (394)
Q Consensus 51 ~las~~~-d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 129 (394)
.+..|+- +.+..+|+.+.+..+... -....+..+. .+++ ++.+|...|+|.+-|..+.+.++++..|++
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~-----v~a~~v~imR----~Nnr-~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTN-----VSASGVTIMR----YNNR-NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeee-----ccCCceEEEE----ecCc-EEEeecccceEEeecCCcCceeeeeecccc
Confidence 3444444 348888887776554443 2222354443 5577 999999999999999999999999999999
Q ss_pred ceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecC
Q 016185 130 SINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 209 (394)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 209 (394)
.|.++.. .+++|++|+...+...+.. |..|+|||++..+.+..+. -+. ...-+.|+|
T Consensus 219 siSDfDv---~GNlLitCG~S~R~~~l~~----------------D~FvkVYDLRmmral~PI~---~~~-~P~flrf~P 275 (1118)
T KOG1275|consen 219 SISDFDV---QGNLLITCGYSMRRYNLAM----------------DPFVKVYDLRMMRALSPIQ---FPY-GPQFLRFHP 275 (1118)
T ss_pred ceeeeec---cCCeEEEeecccccccccc----------------cchhhhhhhhhhhccCCcc---ccc-Cchhhhhcc
Confidence 9998876 4588999887333322222 8899999999888776665 232 236688888
Q ss_pred CCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeE
Q 016185 210 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI 287 (394)
Q Consensus 210 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i 287 (394)
.-...+++++..|...+.|..+.... ...+.........+..+.++ ++.++.+..+|.|
T Consensus 276 sl~t~~~V~S~sGq~q~vd~~~lsNP-------------------~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 276 SLTTRLAVTSQSGQFQFVDTATLSNP-------------------PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred cccceEEEEecccceeeccccccCCC-------------------ccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 66778999999999999995442110 01122222333446766665 8899999999999
Q ss_pred EEec
Q 016185 288 VLWE 291 (394)
Q Consensus 288 ~~~d 291 (394)
.+|.
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9998
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.91 E-value=1.9e-05 Score=65.22 Aligned_cols=230 Identities=14% Similarity=0.062 Sum_probs=133.5
Q ss_pred EEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECC
Q 016185 38 AVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS 116 (394)
Q Consensus 38 ~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 116 (394)
+++|.+ .++.++.+--.++ |..|+..++... .+.. .. ...+++. .+++. ++.+...+ +.++|+.
T Consensus 4 gp~~d~---~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~------~~-~~G~~~~-~~~g~--l~v~~~~~-~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDP---RDGRLYWVDIPGGRIYRVDPDTGEVE-VIDL------PG-PNGMAFD-RPDGR--LYVADSGG-IAVVDPD 68 (246)
T ss_dssp EEEEET---TTTEEEEEETTTTEEEEEETTTTEEE-EEES------SS-EEEEEEE-CTTSE--EEEEETTC-EEEEETT
T ss_pred ceEEEC---CCCEEEEEEcCCCEEEEEECCCCeEE-EEec------CC-CceEEEE-ccCCE--EEEEEcCc-eEEEecC
Confidence 466776 2577888776666 999998776542 2221 11 3334443 14554 55555544 4555998
Q ss_pred CCeeEEEEEe-----cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEE
Q 016185 117 NEKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILI 191 (394)
Q Consensus 117 ~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 191 (394)
+++....... .....+++++.| ++++.++....- .......|.|..++.. ++....
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~-----------------~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGG-----------------GASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCB-----------------CTTCGGSEEEEEEETT-SEEEEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCC-----------------ccccccccceEEECCC-CeEEEE
Confidence 8865444443 345678999999 677777655300 0000000556667765 454444
Q ss_pred eeccCCCcccEEEEEecCCCCeeE-EeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEE
Q 016185 192 FAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 270 (394)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 270 (394)
.. .-...+.|+|+| +++.| ++-+..+.|..+++........ .......+.........
T Consensus 130 ~~----~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~g~pDG 188 (246)
T PF08450_consen 130 AD----GLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELS----------------NRRVFIDFPGGPGYPDG 188 (246)
T ss_dssp EE----EESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEE----------------EEEEEEE-SSSSCEEEE
T ss_pred ec----CcccccceEECC-cchheeecccccceeEEEecccccccee----------------eeeeEEEcCCCCcCCCc
Confidence 33 455678999999 77654 5677888899999875221000 01112222222234778
Q ss_pred EEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEe-ecCCcceEEE
Q 016185 271 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAI 333 (394)
Q Consensus 271 ~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l~~ 333 (394)
++++ |++.++....+.|.++|.+ ++ .+..+..+...+++++|. ++.. .+++|
T Consensus 189 ~~vD~~G~l~va~~~~~~I~~~~p~-G~---------~~~~i~~p~~~~t~~~fgg~~~~-~L~vT 243 (246)
T PF08450_consen 189 LAVDSDGNLWVADWGGGRIVVFDPD-GK---------LLREIELPVPRPTNCAFGGPDGK-TLYVT 243 (246)
T ss_dssp EEEBTTS-EEEEEETTTEEEEEETT-SC---------EEEEEE-SSSSEEEEEEESTTSS-EEEEE
T ss_pred ceEcCCCCEEEEEcCCCEEEEECCC-cc---------EEEEEcCCCCCEEEEEEECCCCC-EEEEE
Confidence 8887 7777777789999999987 54 455555555578999995 4443 34444
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.90 E-value=1.1e-06 Score=72.25 Aligned_cols=217 Identities=20% Similarity=0.169 Sum_probs=125.9
Q ss_pred CCeEEEEECCCCeeEEEEEecCCceeEEE--EcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec
Q 016185 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIR--TQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ 184 (394)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~ 184 (394)
+|.|..||..+++.+.+..- ........ ..+ ++..+++++. ++.|..||..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~-~~~~v~~~~~-------------------------~~~l~~~d~~ 54 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVP-DGGRVYVASG-------------------------DGNLYALDAK 54 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEE-ETTEEEEEET-------------------------TSEEEEEETT
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEE-eCCEEEEEcC-------------------------CCEEEEEECC
Confidence 68999999999999988864 11111111 121 2344455455 9999999999
Q ss_pred CCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecC
Q 016185 185 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 264 (394)
Q Consensus 185 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (394)
+|+.+..+......... ... .+..++.++.++.+..+|..+++..-... .......
T Consensus 55 tG~~~W~~~~~~~~~~~---~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~------------------~~~~~~~ 110 (238)
T PF13360_consen 55 TGKVLWRFDLPGPISGA---PVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIY------------------LTSSPPA 110 (238)
T ss_dssp TSEEEEEEECSSCGGSG---EEE---ETTEEEEEETTSEEEEEETTTSCEEEEEE------------------E-SSCTC
T ss_pred CCCEEEEeeccccccce---eee---cccccccccceeeeEecccCCcceeeeec------------------ccccccc
Confidence 99998887732111122 122 33445666678899999988865422100 0000001
Q ss_pred -CCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCC----------CeEEEEEeecCCcceEEE
Q 016185 265 -SNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC----------DIWFIKFSCDFHYNAAAI 333 (394)
Q Consensus 265 -~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~~~l~~ 333 (394)
........+.++.++.+..++.|..+|+++++. +........ .+..-....++ .++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~---------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~ 178 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL---------LWKYPVGEPRGSSPISSFSDINGSPVISDG---RVYV 178 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEE---------EEEEESSTT-SS--EEEETTEEEEEECCTT---EEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcE---------EEEeecCCCCCCcceeeecccccceEEECC---EEEE
Confidence 111223344488888888899999999998862 222222111 11122222233 5666
Q ss_pred EeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 334 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
++.++.+.-+|+.+++. +.... ...+..+ ...++..|+.++.++.|..||+++
T Consensus 179 ~~~~g~~~~~d~~tg~~--~w~~~----~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 179 SSGDGRVVAVDLATGEK--LWSKP----ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp ECCTSSEEEEETTTTEE--EEEEC----SS-ECEC-EECCCTEEEEEETTTEEEEEETTT
T ss_pred EcCCCeEEEEECCCCCE--EEEec----CCCccCC-ceeeCCEEEEEeCCCEEEEEECCC
Confidence 67677544449988852 22222 1223321 345677888888999999999876
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.90 E-value=1.2e-06 Score=71.96 Aligned_cols=227 Identities=13% Similarity=0.044 Sum_probs=126.6
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCC
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (394)
|..||..+|+.+-....- +... ....... +++. .+++++.++.|..||..+|+.+.++.. ...+.......
T Consensus 5 l~~~d~~tG~~~W~~~~~--~~~~-~~~~~~~---~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~- 75 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLG--PGIG-GPVATAV---PDGG-RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD- 75 (238)
T ss_dssp EEEEETTTTEEEEEEECS--SSCS-SEEETEE---EETT-EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE-
T ss_pred EEEEECCCCCEEEEEECC--CCCC-CccceEE---EeCC-EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec-
Confidence 788888888876665421 0111 1111122 3455 788888999999999999999888875 22222211222
Q ss_pred CCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEe-eccCCCcccEEEEEecCCCCeeEEee
Q 016185 140 KPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIF-AGAGGHRNEVLSVDFHPSDIYRIASC 218 (394)
Q Consensus 140 ~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~s~ 218 (394)
+ ..++.+.. ++.+..+|..+|+.+... ................. .+..++.+
T Consensus 76 ~-~~v~v~~~-------------------------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 128 (238)
T PF13360_consen 76 G-GRVYVGTS-------------------------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVG 128 (238)
T ss_dssp T-TEEEEEET-------------------------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEE
T ss_pred c-cccccccc-------------------------eeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEE
Confidence 3 34444445 889999999999998884 31100011112222222 35667777
Q ss_pred ccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCe-EEEecCCCCCC
Q 016185 219 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNE-IVLWEPKMKEQ 297 (394)
Q Consensus 219 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~ 297 (394)
..++.|..+|+++++..-......... ..++. ........+.+.+..++.++.++. +.+ |+.+++.
T Consensus 129 ~~~g~l~~~d~~tG~~~w~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~ 195 (238)
T PF13360_consen 129 TSSGKLVALDPKTGKLLWKYPVGEPRG---------SSPIS---SFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEK 195 (238)
T ss_dssp ETCSEEEEEETTTTEEEEEEESSTT-S---------S--EE---EETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEE
T ss_pred eccCcEEEEecCCCcEEEEeecCCCCC---------Cccee---eecccccceEEECCEEEEEcCCCeEEEE-ECCCCCE
Confidence 779999999999965432221100000 00000 000011223333447777777775 555 9988752
Q ss_pred CCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCC
Q 016185 298 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 349 (394)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (394)
+-+.. ......+ ..+.+ ..+++++.++.|..||+.+++
T Consensus 196 ---------~w~~~--~~~~~~~-~~~~~--~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 196 ---------LWSKP--ISGIYSL-PSVDG--GTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ---------EEEEC--SS-ECEC-EECCC--TEEEEEETTTEEEEEETTTTE
T ss_pred ---------EEEec--CCCccCC-ceeeC--CEEEEEeCCCEEEEEECCCCC
Confidence 22212 1112221 34444 467777799999999999985
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.7e-07 Score=84.20 Aligned_cols=190 Identities=16% Similarity=0.204 Sum_probs=132.8
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeee
Q 016185 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLL 163 (394)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~ 163 (394)
..+++++++ ++ .++-|.-+|.|++.+.+ +.+ .+...|... .. ++.++++|+.
T Consensus 40 D~is~~av~----~~-~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~-~Gey~asCS~-------------- 91 (846)
T KOG2066|consen 40 DAISCCAVH----DK-FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------IL-EGEYVASCSD-------------- 91 (846)
T ss_pred hHHHHHHhh----cc-eeeeccccceEEEEecC-Ccc-ccccccccc------cc-CCceEEEecC--------------
Confidence 445555554 55 89999999999999964 444 444445443 33 7899999999
Q ss_pred eeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCC-----CeeEEeeccCCcEEEEEccccceeecc
Q 016185 164 FIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD-----IYRIASCGMDNTVKIWSMKEFWTYVEK 238 (394)
Q Consensus 164 ~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~s~~~dg~v~iwd~~~~~~~~~~ 238 (394)
||.|.|-.+-+.+....+. ...++.+++++| + ...+++|+.-| +.++.-+-...
T Consensus 92 -----------DGkv~I~sl~~~~~~~~~d----f~rpiksial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgn---- 150 (846)
T KOG2066|consen 92 -----------DGKVVIGSLFTDDEITQYD----FKRPIKSIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGN---- 150 (846)
T ss_pred -----------CCcEEEeeccCCccceeEe----cCCcceeEEecc-chhhhhhhheeecCcce-EEEehhhhhcC----
Confidence 9999999999888887775 788999999999 5 56899999998 87776544221
Q ss_pred ccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeE
Q 016185 239 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 318 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 318 (394)
..++ .+..-.++|.++.|.|++++=++.+| |++||+.+.+......... ....++.--.
T Consensus 151 ----------------k~~v-~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~---~~~R~e~fpp 209 (846)
T KOG2066|consen 151 ----------------KDSV-VLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS---QSVRPELFPP 209 (846)
T ss_pred ----------------ccce-eeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCC---CCCCcccCCC
Confidence 1111 45556788999999999999887776 8999999876432221111 0011111223
Q ss_pred EEEEeecCCcceEEEEeCCCcEEEEEecC
Q 016185 319 FIKFSCDFHYNAAAIGNREGKIFVWELQS 347 (394)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 347 (394)
.+.|.++. .|+.|-.| +|+|..++.
T Consensus 210 hl~W~~~~---~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 210 HLHWQDED---RLVIGWGD-SVKICSIKK 234 (846)
T ss_pred ceEecCCC---eEEEecCC-eEEEEEEec
Confidence 56787776 56666544 688888873
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7.3e-08 Score=80.74 Aligned_cols=254 Identities=15% Similarity=0.087 Sum_probs=165.0
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCC--C-eeEEEEEecCCceeEEEEcCCCCcEEEEc-eeeeEEeecc
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--E-KLHKSFVGHGDSINEIRTQPLKPSLVVSA-SKVIIISSLS 157 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~~i~~~~~~ 157 (394)
|...|+.+... ..+ ++.+++.||.++.|.-.. + +.+..+..|...|.+++.+. ++.++.|. ..
T Consensus 8 hrd~i~hv~~t---ka~-fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~-------- 74 (558)
T KOG0882|consen 8 HRDVITHVFPT---KAK-FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDP-------- 74 (558)
T ss_pred ccceeeeEeee---hhh-eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCc--------
Confidence 55566665433 334 999999999999998543 1 34556668888999999888 77888884 44
Q ss_pred ceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCC--eeEEeeccCCcEEEEEcccccee
Q 016185 158 LICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI--YRIASCGMDNTVKIWSMKEFWTY 235 (394)
Q Consensus 158 ~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~ 235 (394)
|..++++|+++-..+..++.. -..+.+. ...+|.+. ..-++.-.+|.+.++|-....
T Consensus 75 -----------------Dhs~KvfDvEn~DminmiKL~-~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~-- 133 (558)
T KOG0882|consen 75 -----------------DHSVKVFDVENFDMINMIKLV-DLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDF-- 133 (558)
T ss_pred -----------------ccceeEEEeeccchhhhcccc-cCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCc--
Confidence 899999999876665444311 1122222 22233121 223334467899999987732
Q ss_pred eccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCC-CCCCC-----CCcceec
Q 016185 236 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK-EQSPG-----EGTADIL 307 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~-~~~~~-----~~~~~~~ 307 (394)
......-..|..+|.++.+. ++.+++....|.|.-|..... +.+.. .....-+
T Consensus 134 -------------------~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL 194 (558)
T KOG0882|consen 134 -------------------CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL 194 (558)
T ss_pred -------------------CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchh
Confidence 22345566799999999997 889999999999999998842 11111 0011122
Q ss_pred ccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEec-----------------c------------
Q 016185 308 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-----------------H------------ 358 (394)
Q Consensus 308 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------~------------ 358 (394)
..+........++.|+|++ ..+.+-+.|..|+++++.+++.. +.+. +
T Consensus 195 y~f~K~Kt~pts~Efsp~g--~qistl~~DrkVR~F~~KtGklv--qeiDE~~t~~~~q~ks~y~l~~VelgRRmavere 270 (558)
T KOG0882|consen 195 YGFPKAKTEPTSFEFSPDG--AQISTLNPDRKVRGFVFKTGKLV--QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERE 270 (558)
T ss_pred hcccccccCccceEEcccc--CcccccCcccEEEEEEeccchhh--hhhhccchhhhhccccccccceeehhhhhhHHhh
Confidence 3334445567899999999 67898899999999999877421 1111 0
Q ss_pred -CCc-cCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 359 -AQS-KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 359 -~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
..| ...-+.+.|...|++|+-++-=| |+|.++.+
T Consensus 271 lek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 271 LEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred HhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 011 12335678888889988776543 66666543
No 305
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.87 E-value=2.3e-06 Score=84.27 Aligned_cols=217 Identities=14% Similarity=0.069 Sum_probs=127.3
Q ss_pred eeEEEEEeeCCCcceEEEEec-CCc-EEEEEcCCCceeEEeeecccC-----Cc-------ccceEEEEEEEcCCCCcEE
Q 016185 36 LYAVVFNFIDSRYFNVFATVG-GNR-VTVYQCLEGGVIAALQSYVDE-----DK-------EESFYTVSWACNVDGIPFL 101 (394)
Q Consensus 36 v~~i~~sp~~~~~~~~las~~-~d~-i~vw~~~~~~~~~~~~~~~~~-----~~-------~~~v~~~~~~~~~~~~~~l 101 (394)
...|++++ +++.|+.+. .+. |+++|..++. +.++...... +. -..-..+++. |++..++
T Consensus 626 P~GIavd~----~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d--p~~g~Ly 698 (1057)
T PLN02919 626 PQGLAYNA----KKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE--PVNEKVY 698 (1057)
T ss_pred CcEEEEeC----CCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe--cCCCeEE
Confidence 57788987 455444443 334 9999976654 3443221000 00 0112356666 8444377
Q ss_pred EEeecCCeEEEEECCCCeeEEEEEec---------------CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeec
Q 016185 102 VAGGINGIIRVIDVSNEKLHKSFVGH---------------GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIR 166 (394)
Q Consensus 102 ~s~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~ 166 (394)
++...++.|++||..++... .+.+. -.....|+++|++..++++-+.
T Consensus 699 Vad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~----------------- 760 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE----------------- 760 (1057)
T ss_pred EEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------
Confidence 77788899999998776432 22211 1234568888844446666666
Q ss_pred cceeeeccCCcEEEEEecCCcEEEEeec----------cC--------CCcccEEEEEecCCCCeeEEeeccCCcEEEEE
Q 016185 167 SNCLRVGQDESVRLWNVQTGICILIFAG----------AG--------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228 (394)
Q Consensus 167 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~----------~~--------~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd 228 (394)
++.|++||+.++........ .. ..-....++++++ +++++++-+.++.|++||
T Consensus 761 --------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD 831 (1057)
T PLN02919 761 --------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLD 831 (1057)
T ss_pred --------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEE
Confidence 88999999887653211100 00 0011346889999 888889989999999999
Q ss_pred ccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCC
Q 016185 229 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 296 (394)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~ 296 (394)
..++........ .... +.. .. .....-.....++++ |+.+++-+.++.|++||+++++
T Consensus 832 ~~tg~v~tiaG~---G~~G-~~d---G~---~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 832 PATKRVTTLAGT---GKAG-FKD---GK---ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCeEEEEecc---CCcC-CCC---Cc---ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 987432111000 0000 000 00 011222345667776 7788888899999999998865
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=1.1e-08 Score=57.19 Aligned_cols=37 Identities=32% Similarity=0.468 Sum_probs=34.4
Q ss_pred eeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 352 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
++..+. +|.++|++++|+|++.+|++++.|+.|++||
T Consensus 3 ~~~~~~--~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFR--GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEE--SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEc--CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 566777 9999999999999999999999999999997
No 307
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.1e-07 Score=74.73 Aligned_cols=79 Identities=9% Similarity=0.166 Sum_probs=68.5
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
.+..-|..++|++...| ++..++.+..|+|.|+++...+..+..+ ..+++++|..++.++++.|-.
T Consensus 191 ~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~----------- 256 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ----------- 256 (463)
T ss_pred ccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEecc-----------
Confidence 56777888888844344 7899999999999999999999999888 789999999988889999998
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
.|.|.|||++..+
T Consensus 257 --------------nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 257 --------------NGMVLVYDMRQPE 269 (463)
T ss_pred --------------CceEEEEEccCCC
Confidence 9999999998654
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1e-06 Score=72.98 Aligned_cols=106 Identities=12% Similarity=0.233 Sum_probs=76.1
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCc
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (394)
..++....+.+|...|..++|||. +..++..++.+. |.|.|+.+...+..+. .+ ..+++++|. -+...
T Consensus 181 ~~fkssq~lp~~g~~IrdlafSp~---~~GLl~~asl~nkiki~dlet~~~vssy~-----a~-~~~wSC~wD--lde~h 249 (463)
T KOG1645|consen 181 HDFKSSQILPGEGSFIRDLAFSPF---NEGLLGLASLGNKIKIMDLETSCVVSSYI-----AY-NQIWSCCWD--LDERH 249 (463)
T ss_pred CCcchhhcccccchhhhhhccCcc---ccceeeeeccCceEEEEecccceeeehee-----cc-CCceeeeec--cCCcc
Confidence 445555667788999999999993 233677777777 9999999887766665 23 688999999 55566
Q ss_pred EEEEeecCCeEEEEECCCCe-eEEEEEe--cCCceeEEEEc
Q 016185 100 FLVAGGINGIIRVIDVSNEK-LHKSFVG--HGDSINEIRTQ 137 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~-~~~~~~~--~~~~v~~~~~~ 137 (394)
++.+|..+|.|.|||++..+ .+..+.+ ...+|..++.-
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~ 290 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPV 290 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeeccc
Confidence 99999999999999997543 2333322 23355555443
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=5e-05 Score=62.70 Aligned_cols=225 Identities=15% Similarity=0.130 Sum_probs=135.7
Q ss_pred EEEEEcC-CCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeecc
Q 016185 89 VSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRS 167 (394)
Q Consensus 89 ~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~ 167 (394)
..|. + ++. ++++--..+.|..|+..+++.. .+.... ...+.+...++.++++ .
T Consensus 5 p~~d--~~~g~-l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~-~------------------- 58 (246)
T PF08450_consen 5 PVWD--PRDGR-LYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVA-D------------------- 58 (246)
T ss_dssp EEEE--TTTTE-EEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEE-E-------------------
T ss_pred eEEE--CCCCE-EEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEE-E-------------------
Confidence 5566 6 555 7777778999999998776543 233222 6677777325455444 4
Q ss_pred ceeeeccCCcEEEEEecCCcEEEEeecc-CC-CcccEEEEEecCCCCeeEEeeccC--------CcEEEEEccccceeec
Q 016185 168 NCLRVGQDESVRLWNVQTGICILIFAGA-GG-HRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVE 237 (394)
Q Consensus 168 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~~l~s~~~d--------g~v~iwd~~~~~~~~~ 237 (394)
.+.+.++|..+++........ .. .....+.+++.| ++++.++.... |.|..++... +
T Consensus 59 -------~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~---- 125 (246)
T PF08450_consen 59 -------SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDG-K---- 125 (246)
T ss_dssp -------TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTS-E----
T ss_pred -------cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCC-e----
Confidence 345566698888655444421 12 456789999999 88877765543 4566666662 1
Q ss_pred cccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEE-EEeecCCeEEEecCCCCCCCCCCCcceecccccCCC
Q 016185 238 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE 314 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 314 (394)
+......-.....++|+ ++.| ++-+..+.|..|++....... ...+.+..+....
T Consensus 126 --------------------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~ 183 (246)
T PF08450_consen 126 --------------------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL--SNRRVFIDFPGGP 183 (246)
T ss_dssp --------------------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE--EEEEEEEE-SSSS
T ss_pred --------------------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccce--eeeeeEEEcCCCC
Confidence 22222223446788887 5555 566778899999986443100 0111222223222
Q ss_pred CCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEec-cCCCEEEEec
Q 016185 315 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILSCC 381 (394)
Q Consensus 315 ~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~ 381 (394)
...-.+++..++ ++.++....+.|.+++.. ++ .+..+... ...+++++|. ++.+.|...+
T Consensus 184 g~pDG~~vD~~G--~l~va~~~~~~I~~~~p~-G~--~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 184 GYPDGLAVDSDG--NLWVADWGGGRIVVFDPD-GK--LLREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp CEEEEEEEBTTS---EEEEEETTTEEEEEETT-SC--EEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred cCCCcceEcCCC--CEEEEEcCCCEEEEECCC-cc--EEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 336788999888 566666778999999987 53 45555522 3479999994 6666665443
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.6e-07 Score=78.71 Aligned_cols=209 Identities=15% Similarity=0.123 Sum_probs=142.9
Q ss_pred cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEE
Q 016185 127 HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 206 (394)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 206 (394)
|...|+.+.-. ..+++.+++. ||.++.|--..-.-+...+....|...|.+++
T Consensus 8 hrd~i~hv~~t--ka~fiiqASl-------------------------DGh~KFWkKs~isGvEfVKhFraHL~~I~sl~ 60 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASL-------------------------DGHKKFWKKSRISGVEFVKHFRAHLGVILSLA 60 (558)
T ss_pred ccceeeeEeee--hhheEEeeec-------------------------chhhhhcCCCCccceeehhhhHHHHHHHHhhh
Confidence 66667666544 4578888888 99999998643233333332337889999999
Q ss_pred ecCCCCeeEEeecc-CCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeC----cEEEEe
Q 016185 207 FHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG----DFILSK 281 (394)
Q Consensus 207 ~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~ 281 (394)
.+. ++.++.|.+. |..++++|+.+.... ....+..-+..+..+.-.| ..-++.
T Consensus 61 ~S~-dg~L~~Sv~d~Dhs~KvfDvEn~Dmi---------------------nmiKL~~lPg~a~wv~skGd~~s~IAVs~ 118 (558)
T KOG0882|consen 61 VSY-DGWLFRSVEDPDHSVKVFDVENFDMI---------------------NMIKLVDLPGFAEWVTSKGDKISLIAVSL 118 (558)
T ss_pred ccc-cceeEeeccCcccceeEEEeeccchh---------------------hhcccccCCCceEEecCCCCeeeeEEeec
Confidence 998 9999999777 999999999883211 0111222222222222223 233444
Q ss_pred ecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCC----CceeeEEec
Q 016185 282 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS----PPVLIARLS 357 (394)
Q Consensus 282 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~ 357 (394)
-.++.+.++|-..... +....-..|..+|..+.+.+.+ ..+.+....|.|.-|..... +......++
T Consensus 119 ~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K 189 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK 189 (558)
T ss_pred ccCCCcEEECCcCCcC-------ccceecccccCceEEEEeeccc--cceeeccccceeEeecCCCcccCcccccccccc
Confidence 5688999999876542 1344456688899999999999 57888888999999998731 101111111
Q ss_pred -------cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 358 -------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 358 -------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
........+++.|+|++..+.+-+.|..|+++++.+
T Consensus 190 ~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 190 HETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred ccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc
Confidence 123456788999999999999999999999999865
No 311
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.76 E-value=5.7e-09 Score=91.06 Aligned_cols=206 Identities=16% Similarity=0.188 Sum_probs=135.4
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCee--EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
...+.|+++.+..+- .+++.|..+|.|.+-.+....- .....+|..+.++++|++-+.+.||.|-+..+.
T Consensus 56 tqy~kcva~~y~~d~-cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrn------- 127 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDR-CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRN------- 127 (783)
T ss_pred CCCceeehhhcCCch-hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcc-------
Confidence 345667777765553 4899999999999988765422 234457888999999999877888887532111
Q ss_pred eeeeeccceeeeccCCcEEEEEecCC--cEE--EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceee
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTG--ICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV 236 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~--~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 236 (394)
|..+.|||+.++ .+. ..+.. +......+++|.. +.+++.+|.....+.++|++...
T Consensus 128 --------------ds~~~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~--- 187 (783)
T KOG1008|consen 128 --------------DSSLKIWDINSLLTVPKESPLFSS--STLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL--- 187 (783)
T ss_pred --------------cCCccceecccccCCCcccccccc--ccccCcccccccc-Ccchhhcccccchhhhhhhhhhh---
Confidence 778999999876 221 11221 1334556899986 88999999999999999999621
Q ss_pred ccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEec-CCCCCCCCCCCcceecccccC
Q 016185 237 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWE-PKMKEQSPGEGTADILQKYPV 312 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d-~~~~~~~~~~~~~~~~~~~~~ 312 (394)
.......+..+..+..+ ++++++-. ||.|.+|| .++-+. ++..+..
T Consensus 188 ---------------------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien--------pl~~i~~ 237 (783)
T KOG1008|consen 188 ---------------------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN--------PLQIILR 237 (783)
T ss_pred ---------------------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhcc--------HHHHHhh
Confidence 11111122233333333 77887755 99999999 443332 2222221
Q ss_pred ----CCCCeEEEEEeecCCcceEEEEe-CCCcEEEEEecC
Q 016185 313 ----PECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQS 347 (394)
Q Consensus 313 ----~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 347 (394)
....+..++|+|-..+ .+++.. ..++|++||+..
T Consensus 238 ~~N~~~~~l~~~aycPtrtg-lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTG-LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCcccceeeEEeccCCcc-hhhhhccCcceEEEecccc
Confidence 2235889999998864 555544 557899999863
No 312
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.76 E-value=2.3e-05 Score=69.59 Aligned_cols=275 Identities=9% Similarity=0.037 Sum_probs=145.0
Q ss_pred EEEEecCCc-EEEEEcCCCceeEEeeecccCC-cccc-eEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec
Q 016185 51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDED-KEES-FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (394)
Q Consensus 51 ~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~-~~~~-v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 127 (394)
.++.++.++ +.-+|..+|+.+-..+...... .... -..+.-.+.-++. .++.++.+|.+.-+|.++|+.+.+....
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGG-KVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECC-EEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 444444554 8899999998765443211000 0000 0000000001244 6778888999999999999988877643
Q ss_pred CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccE-----
Q 016185 128 GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEV----- 202 (394)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i----- 202 (394)
.......... + ..++.+.. ++.+..+|.++|+.+..+.. ....+
T Consensus 150 ~~~~ssP~v~--~-~~v~v~~~-------------------------~g~l~ald~~tG~~~W~~~~---~~~~~~~~~~ 198 (394)
T PRK11138 150 GEALSRPVVS--D-GLVLVHTS-------------------------NGMLQALNESDGAVKWTVNL---DVPSLTLRGE 198 (394)
T ss_pred CceecCCEEE--C-CEEEEECC-------------------------CCEEEEEEccCCCEeeeecC---CCCcccccCC
Confidence 2211111111 2 23334444 89999999999998887752 11000
Q ss_pred EEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeee-ecCCCceEEEEEeCcEEEEe
Q 016185 203 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWLGDFILSK 281 (394)
Q Consensus 203 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~ 281 (394)
.+-... ++ .++.++.+|.+..+|..+++..-+..... + .. ......+ .....+ ...++.++.+
T Consensus 199 ~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~---~---~~---~~~~~~~~~~~~sP----~v~~~~vy~~ 262 (394)
T PRK11138 199 SAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQ---P---TG---ATEIDRLVDVDTTP----VVVGGVVYAL 262 (394)
T ss_pred CCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheecccc---C---CC---ccchhcccccCCCc----EEECCEEEEE
Confidence 111111 23 46667788999999988865322111000 0 00 0000000 000111 1226677777
Q ss_pred ecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCc
Q 016185 282 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS 361 (394)
Q Consensus 282 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (394)
+.+|.+..+|..+++. +-+.... ....+ ...+ ..++.++.+|.+..+|..+++. +-+.....+
T Consensus 263 ~~~g~l~ald~~tG~~---------~W~~~~~--~~~~~--~~~~--~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~ 325 (394)
T PRK11138 263 AYNGNLVALDLRSGQI---------VWKREYG--SVNDF--AVDG--GRIYLVDQNDRVYALDTRGGVE--LWSQSDLLH 325 (394)
T ss_pred EcCCeEEEEECCCCCE---------EEeecCC--CccCc--EEEC--CEEEEEcCCCeEEEEECCCCcE--EEcccccCC
Confidence 8899999999998863 1111111 11111 2233 3677788899999999988852 222210011
Q ss_pred cCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 362 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 362 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
....+... .+.+|+.++.||.|++.|..+
T Consensus 326 -~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 326 -RLLTAPVL--YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred -CcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 11111122 245778888899999888654
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=3.4e-08 Score=55.14 Aligned_cols=39 Identities=33% Similarity=0.714 Sum_probs=35.5
Q ss_pred CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEE
Q 016185 186 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228 (394)
Q Consensus 186 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd 228 (394)
++++..+. +|.+.|++++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~---~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR---GHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE---SSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc---CCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 35677777 8999999999999 899999999999999997
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.1e-06 Score=79.33 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=124.0
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
.+.++|++++ ++.|+-|..++ |++++.... . .+.. .|... +.+|. ++++|+.||.|.
T Consensus 39 ~D~is~~av~------~~~~~~GtH~g~v~~~~~~~~-~-~~~~-----~~s~~--------~~~Ge-y~asCS~DGkv~ 96 (846)
T KOG2066|consen 39 NDAISCCAVH------DKFFALGTHRGAVYLTTCQGN-P-KTNF-----DHSSS--------ILEGE-YVASCSDDGKVV 96 (846)
T ss_pred hhHHHHHHhh------cceeeeccccceEEEEecCCc-c-cccc-----ccccc--------ccCCc-eEEEecCCCcEE
Confidence 5679999998 57899999998 999995443 2 2222 12111 47898 999999999999
Q ss_pred EEECCCCeeEEEEEecCCceeEEEEcCC----CCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC-C
Q 016185 112 VIDVSNEKLHKSFVGHGDSINEIRTQPL----KPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT-G 186 (394)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~-~ 186 (394)
|-.+.+.+...++. ...++.+++++|+ ....+++|+. .| +.++.-+- |
T Consensus 97 I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~-------------------------ag-lvL~er~wlg 149 (846)
T KOG2066|consen 97 IGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGM-------------------------AG-LVLSERNWLG 149 (846)
T ss_pred EeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCc-------------------------ce-EEEehhhhhc
Confidence 99998888777766 4578999999994 2456777776 77 77775431 1
Q ss_pred cE-EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 187 IC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 187 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
.. ...+. ...++|.++.|. +++++-++.+| |++||....+...... .+. ......
T Consensus 150 nk~~v~l~---~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~-----~p~------------~~~R~e 205 (846)
T KOG2066|consen 150 NKDSVVLS---EGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIP-----PPS------------QSVRPE 205 (846)
T ss_pred Cccceeee---cCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccC-----CCC------------CCCCcc
Confidence 11 11233 567899999995 67888888777 9999998854322111 000 000011
Q ss_pred CceEEEEEeCcEEEEeecCCeEEEecCC
Q 016185 266 NYVDCNRWLGDFILSKSVDNEIVLWEPK 293 (394)
Q Consensus 266 ~~i~~~~~~~~~l~~~~~dg~i~~~d~~ 293 (394)
..-..+.|..+.-+.-+...+|++..++
T Consensus 206 ~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 206 LFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred cCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 1123355654444444677788888887
No 315
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=1.9e-05 Score=69.96 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=70.7
Q ss_pred ceEEEEEEEcCCCCcEEEEeec---CCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 85 SFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
....-.|+ |||+..++..+. +..|.++|+.+++...... ..+......|+|++..++++.+.
T Consensus 189 ~~~~p~wS--pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~------------ 253 (419)
T PRK04043 189 LNIFPKWA--NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAP------------ 253 (419)
T ss_pred CeEeEEEC--CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEcc------------
Confidence 44556676 999832443332 4579999998876544433 45556678899955555555554
Q ss_pred eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeec-cCC--cEEEEEcccc
Q 016185 162 LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEF 232 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~-~dg--~v~iwd~~~~ 232 (394)
..+..|.++|+.+++..+ +. .+........|+| |++.|+..+ ..+ .|.+.|+.++
T Consensus 254 -----------~g~~~Iy~~dl~~g~~~~-LT---~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 254 -----------KGQPDIYLYDTNTKTLTQ-IT---NYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred -----------CCCcEEEEEECCCCcEEE-cc---cCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 114568888887776443 33 2333234568999 776555554 334 5666777663
No 316
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=1.8e-05 Score=70.11 Aligned_cols=153 Identities=10% Similarity=-0.007 Sum_probs=92.1
Q ss_pred ceeEEEEEeeCCCcceE-EEEe-cC--Cc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC--
Q 016185 35 PLYAVVFNFIDSRYFNV-FATV-GG--NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-- 107 (394)
Q Consensus 35 ~v~~i~~sp~~~~~~~~-las~-~~--d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d-- 107 (394)
.+..-.|+| +|+. ++.. -. +. |.++|+.+++...... ..+......|+ |||+.++++.+.+
T Consensus 189 ~~~~p~wSp----DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~------~~g~~~~~~~S--PDG~~la~~~~~~g~ 256 (419)
T PRK04043 189 LNIFPKWAN----KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS------SQGMLVVSDVS--KDGSKLLLTMAPKGQ 256 (419)
T ss_pred CeEeEEECC----CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec------CCCcEEeeEEC--CCCCEEEEEEccCCC
Confidence 678899999 6763 4433 33 22 9999998876543332 22334445666 9998455555544
Q ss_pred CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC--cEEEEEecC
Q 016185 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE--SVRLWNVQT 185 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~ 185 (394)
..|.++|+.+++. ..+..+........|+|++..++++... .+ .|.+.|+.+
T Consensus 257 ~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr-------------------------~g~~~Iy~~dl~~ 310 (419)
T PRK04043 257 PDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDR-------------------------LGYPNIFMKKLNS 310 (419)
T ss_pred cEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECC-------------------------CCCceEEEEECCC
Confidence 4677778877654 4444344333456899944444444433 33 677788877
Q ss_pred CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccC---------CcEEEEEcccc
Q 016185 186 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---------NTVKIWSMKEF 232 (394)
Q Consensus 186 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d---------g~v~iwd~~~~ 232 (394)
++..+.... +. ....|+| +++.++..... ..|.+.|+.++
T Consensus 311 g~~~rlt~~--g~----~~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 311 GSVEQVVFH--GK----NNSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCeEeCccC--CC----cCceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 776444321 11 1248999 88777665543 25777777663
No 317
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.59 E-value=4e-05 Score=62.01 Aligned_cols=223 Identities=9% Similarity=0.050 Sum_probs=117.7
Q ss_pred EEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccE
Q 016185 123 SFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEV 202 (394)
Q Consensus 123 ~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i 202 (394)
.+.+-...++.++|+|+.+.+++.... .+.|..++. +|+.++.+.- ...+..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~-------------------------~~~i~els~-~G~vlr~i~l--~g~~D~ 67 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDE-------------------------PGEIYELSL-DGKVLRRIPL--DGFGDY 67 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETT-------------------------TTEEEEEET-T--EEEEEE---SS-SSE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECC-------------------------CCEEEEEcC-CCCEEEEEeC--CCCCCc
Confidence 344455679999999966778888777 888888886 5788887762 224667
Q ss_pred EEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEE
Q 016185 203 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 280 (394)
Q Consensus 203 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 280 (394)
-.|++.. ++.++++--.++.+.++++.......... ......+.....+...+-.++|+ ++.++.
T Consensus 68 EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v 134 (248)
T PF06977_consen 68 EGITYLG-NGRYVLSEERDQRLYIFTIDDDTTSLDRA------------DVQKISLGFPNKGNKGFEGLAYDPKTNRLFV 134 (248)
T ss_dssp EEEEE-S-TTEEEEEETTTTEEEEEEE----TT--EE------------EEEEEE---S---SS--EEEEEETTTTEEEE
T ss_pred eeEEEEC-CCEEEEEEcCCCcEEEEEEeccccccchh------------hceEEecccccCCCcceEEEEEcCCCCEEEE
Confidence 8889886 77777777678999999995521100000 00000111112355668999998 556666
Q ss_pred eecCCeEEEecCCCCC--CCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEecc
Q 016185 281 KSVDNEIVLWEPKMKE--QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 358 (394)
Q Consensus 281 ~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (394)
+-...-..+|.+.... ..........+.........+.++.++|... .+++....+..|..+| .+++......+..
T Consensus 135 ~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~ 212 (248)
T PF06977_consen 135 AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTG-HLLILSDESRLLLELD-RQGRVVSSLSLDR 212 (248)
T ss_dssp EEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTT-EEEEEETTTTEEEEE--TT--EEEEEE-ST
T ss_pred EeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCC-eEEEEECCCCeEEEEC-CCCCEEEEEEeCC
Confidence 6666666666665411 0000000000111222344678999999865 5777888889999999 5554444444442
Q ss_pred CCc-----cCCeeEEEeccCCCEEEEeccCCeEEEE
Q 016185 359 AQS-----KSPIRQTAMSYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 359 ~~~-----~~~v~~~~~s~~~~~l~s~~~dg~i~iw 389 (394)
..| -...-.|+|.++|++.++ ++-+..++|
T Consensus 213 g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 213 GFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp TGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 111 135788999999865554 466666665
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=5.4e-08 Score=88.33 Aligned_cols=164 Identities=14% Similarity=0.170 Sum_probs=115.5
Q ss_pred ccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcE
Q 016185 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (394)
Q Consensus 22 ~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (394)
.|+..+.++.|...-+|++|+- ..+.|+.|+..+ |++|++.+|....... .|..+|+-+.-+ .+|...
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~----~~~hL~vG~~~Geik~~nv~sG~~e~s~n-----cH~SavT~vePs--~dgs~~ 1158 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSG----GTNHLAVGSHAGEIKIFNVSSGSMEESVN-----CHQSAVTLVEPS--VDGSTQ 1158 (1516)
T ss_pred hcccchhhhccccceeeEEeec----CCceEEeeeccceEEEEEccCcccccccc-----cccccccccccc--CCccee
Confidence 4566677888999999999997 578899999888 9999999998777766 677888777644 888844
Q ss_pred EEEeecCC-eEEEEECCC-CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcE
Q 016185 101 LVAGGING-IIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESV 178 (394)
Q Consensus 101 l~s~~~dg-~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (394)
|.+++... ...+|++.+ +...+++. .-.++.|+. ....-+.|.. ....
T Consensus 1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn-~~q~r~~gt~-------------------------~d~a 1208 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSN-SLQFRALGTE-------------------------ADDA 1208 (1516)
T ss_pred eeeccccCchHHHhccccccCcccccc----ccceeehhh-hHHHHHhccc-------------------------ccce
Confidence 44444433 578999864 44555554 346788887 3333344444 5578
Q ss_pred EEEEecCCcEEEEeec-cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEcccc
Q 016185 179 RLWNVQTGICILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 232 (394)
Q Consensus 179 ~vwd~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 232 (394)
.+||+.++..+.++-. ..+.+-.-++..|+| +..+++- || .+||++..
T Consensus 1209 ~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIln---dG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1209 LLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLILN---DG--VLWDVRIP 1257 (1516)
T ss_pred EEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEee---Cc--eeeeeccH
Confidence 9999999887766331 112223337889999 7776653 55 68999984
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=4.7e-05 Score=69.68 Aligned_cols=196 Identities=13% Similarity=0.133 Sum_probs=130.3
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCc-eeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeec
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS-INEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVG 173 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~ 173 (394)
+.+. .++.|+.+|.|.+.+ ..-+.++.++.+... |..+ +.-++.++|++-+.
T Consensus 33 s~~~-~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~E------------------------ 85 (933)
T KOG2114|consen 33 SSTG-SVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGE------------------------ 85 (933)
T ss_pred CCCc-eEEEeeccccEEEec-ccceeeehheecchhhhhHh-hcccCceEEEEEee------------------------
Confidence 6666 899999999998887 455666888887776 4444 34335578887776
Q ss_pred cCC-----cEEEEEecCC------cEE---EEeecc-CCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeecc
Q 016185 174 QDE-----SVRLWNVQTG------ICI---LIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 238 (394)
Q Consensus 174 ~d~-----~i~vwd~~~~------~~~---~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 238 (394)
|+ .++||+++.- +++ +.+... .....++.+++.+. +-..+++|-.+|.|..+.-.-...
T Consensus 86 -d~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RD---- 159 (933)
T KOG2114|consen 86 -DEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRD---- 159 (933)
T ss_pred -cCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhc----
Confidence 43 5899998642 223 111100 12356789999998 888899999999999885433111
Q ss_pred ccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCC
Q 016185 239 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 316 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
..........-..+|+.+.+. +..++-+.....|.+|.+.... .....+..+..+
T Consensus 160 ---------------rgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~ 216 (933)
T KOG2114|consen 160 ---------------RGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGIS 216 (933)
T ss_pred ---------------cccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC--------cceeeeccCCcc
Confidence 011222333345789999996 5553444556789999988432 134556778888
Q ss_pred eEEEEEeecCCcceEEEEeCCCcEEEEEecCCC
Q 016185 317 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 349 (394)
Q Consensus 317 i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (394)
+.|..+++... .+++++. ..+.+|+....+
T Consensus 217 lnCss~~~~t~--qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 217 LNCSSFSDGTY--QFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred ceeeecCCCCc--cEEEecC-ceEEEEcCCCcc
Confidence 99999988773 3555554 459999987654
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.52 E-value=8.7e-05 Score=70.60 Aligned_cols=220 Identities=11% Similarity=0.093 Sum_probs=125.2
Q ss_pred CceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEec
Q 016185 129 DSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 208 (394)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~ 208 (394)
..|.++.|.. +.+.++.+.. +|.|.+-|..+......= .-...|.+++|+
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~-------------------------~G~iilvd~et~~~eivg----~vd~GI~aaswS 118 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITA-------------------------LGDIILVDPETLELEIVG----NVDNGISAASWS 118 (1265)
T ss_pred cceEEEEEec-ccceEEEEec-------------------------CCcEEEEcccccceeeee----eccCceEEEeec
Confidence 4677777777 4444555555 889998888765543322 356889999999
Q ss_pred CCCCeeEEeeccCCcEEEEEccccceeecc-------------ccccCCCCCCCCccccccceeeeec---------CCC
Q 016185 209 PSDIYRIASCGMDNTVKIWSMKEFWTYVEK-------------SFTWTDLPSKFPTKYVQFPVFIASV---------HSN 266 (394)
Q Consensus 209 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 266 (394)
| |...++..+..+++.+-.- +.....+. .+.|......+.............. -.+
T Consensus 119 ~-Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~ 196 (1265)
T KOG1920|consen 119 P-DEELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD 196 (1265)
T ss_pred C-CCcEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc
Confidence 9 9998888887777766432 11111111 1122221111211111111111111 112
Q ss_pred ceEEEEEe--CcEEEEe-----ecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEE---eC
Q 016185 267 YVDCNRWL--GDFILSK-----SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG---NR 336 (394)
Q Consensus 267 ~i~~~~~~--~~~l~~~-----~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~---~~ 336 (394)
.=..|.|- |+++++. .....|++||.+ +.... .-......-.+++|-|.| ..+++- +.
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns---------~se~~~~l~~~LsWkPsg--s~iA~iq~~~s 264 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS---------TSEPVEGLQHSLSWKPSG--SLIAAIQCKTS 264 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc---------ccCcccccccceeecCCC--CeEeeeeecCC
Confidence 22357775 7788873 233899999987 32111 111111223478899988 566664 35
Q ss_pred CCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEE---eccCCeEEEEEcCC
Q 016185 337 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS---CCEDGAIWRWDAIP 393 (394)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s---~~~dg~i~iwd~~~ 393 (394)
|+.|.+|.-+.-+. -...++.+....+|..++|+.++..||+ ......|++|-+.+
T Consensus 265 d~~IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 265 DSDIVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCcEEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 66899998654321 1122222233455999999999999997 55566699997753
No 321
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=0.00027 Score=55.76 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=89.7
Q ss_pred ceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec
Q 016185 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (394)
Q Consensus 49 ~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 127 (394)
..+++.|+..+ +.--|..+|...-+-. -+..|.+-+.. -|+ +++.|...|.+++.+.++|.....+..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i------lg~RiE~sa~v---vgd-fVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI------LGVRIECSAIV---VGD-FVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh------hCceeeeeeEE---ECC-EEEEEEccCcEEEEEecchhheeeeeeh
Confidence 34566666665 6667777776432211 12233333332 355 8999999999999999999888877643
Q ss_pred CCceeEE-EEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEE
Q 016185 128 GDSINEI-RTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 206 (394)
Q Consensus 128 ~~~v~~~-~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 206 (394)
. .|.+- ...+ ++.++..++. |++.+..|.++..++...+ ....-..+-+
T Consensus 93 ~-~vk~~a~~d~-~~glIycgsh-------------------------d~~~yalD~~~~~cVyksk---cgG~~f~sP~ 142 (354)
T KOG4649|consen 93 E-TVKVRAQCDF-DGGLIYCGSH-------------------------DGNFYALDPKTYGCVYKSK---CGGGTFVSPV 142 (354)
T ss_pred h-hhccceEEcC-CCceEEEecC-------------------------CCcEEEecccccceEEecc---cCCceeccce
Confidence 2 33322 2344 6789999999 9999999999998888876 2333333445
Q ss_pred ecCCCCeeEEeeccCCcEEEEEccc
Q 016185 207 FHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 207 ~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
..| ....|+.+...|.+.--....
T Consensus 143 i~~-g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 143 IAP-GDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred ecC-CCceEEEEeccceEEEEccCC
Confidence 555 333345555556555544443
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=8e-08 Score=87.29 Aligned_cols=193 Identities=15% Similarity=0.182 Sum_probs=128.9
Q ss_pred eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCC
Q 016185 119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGH 198 (394)
Q Consensus 119 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 198 (394)
+..++++.|....+|++|+- +.+.|+.|+. .|.|+++++.+|....... +|
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~-------------------------~Geik~~nv~sG~~e~s~n---cH 1142 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSH-------------------------AGEIKIFNVSSGSMEESVN---CH 1142 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeec-------------------------cceEEEEEccCcccccccc---cc
Confidence 34566778888999999998 7789999998 9999999999999988888 89
Q ss_pred cccEEEEEecCCCCeeEEeeccCC--cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--
Q 016185 199 RNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 274 (394)
Q Consensus 199 ~~~i~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 274 (394)
..+|+-+.-+. ++..+++.+.-. -..+|++..- ..+...+ ..-.++.|+
T Consensus 1143 ~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~~s~----------------------~~~~Hsf----~ed~~vkFsn~ 1195 (1516)
T KOG1832|consen 1143 QSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDASST----------------------GGPRHSF----DEDKAVKFSNS 1195 (1516)
T ss_pred ccccccccccC-CcceeeeeccccCchHHHhccccc----------------------cCccccc----cccceeehhhh
Confidence 99999999888 777666655433 4678988771 1111111 123455665
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccc----cCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCc
Q 016185 275 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 350 (394)
Q Consensus 275 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 350 (394)
-+.-+.|..-....+||+++... +.++ .+....-+.+.|+|.. .+++ .|| .+||++..+
T Consensus 1196 ~q~r~~gt~~d~a~~YDvqT~~~---------l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~- 1258 (1516)
T KOG1832|consen 1196 LQFRALGTEADDALLYDVQTCSP---------LQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPE- 1258 (1516)
T ss_pred HHHHHhcccccceEEEecccCcH---------HHHhcCcchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHH-
Confidence 22333444456788999998863 2221 1122233677899988 3433 345 579998763
Q ss_pred eeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 351 VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 351 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
.+..|. .....+ .=.|+|.|.-++.-+. |||+++
T Consensus 1259 -aIh~FD--~ft~~~-~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1259 -AIHRFD--QFTDYG-GGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred -HHhhhh--hheecc-cccccCCCceEEeech-----hhhhHH
Confidence 455554 211111 2358899988887764 788764
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=0.00041 Score=66.30 Aligned_cols=269 Identities=13% Similarity=0.140 Sum_probs=139.8
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEcee--eeEEeeccc
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--VIIISSLSL 158 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--~i~~~~~~~ 158 (394)
...+.|.++.|. .+.. .++.+...|.|.+-|.++.... ....-...|.+++|+| +...++-.+. .+.+-...+
T Consensus 66 ~gd~~i~s~~fl--~d~~-~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 66 DGDDEIVSVQFL--ADTN-SICVITALGDIILVDPETLELE-IVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CCCcceEEEEEe--cccc-eEEEEecCCcEEEEccccccee-eeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccc
Confidence 334567666665 7777 7888888899988887765322 2222356799999999 6665554433 222211111
Q ss_pred -------eeeeeeeccceeeeccCCcEEEEEecCCcE-----EEEeeccC--CCcccEEEEEecCCCCeeEEee-----c
Q 016185 159 -------ICLLLFIRSNCLRVGQDESVRLWNVQTGIC-----ILIFAGAG--GHRNEVLSVDFHPSDIYRIASC-----G 219 (394)
Q Consensus 159 -------~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-----~~~~~~~~--~~~~~i~~~~~~~~~~~~l~s~-----~ 219 (394)
+-.-..+...++.+|-...=.-+.-..|+. +...+..+ .-.+.=++|.|-- ||.++++. .
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESET 219 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccC
Confidence 011111123333333222111111111110 00000000 0112224688987 89888873 2
Q ss_pred cCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEee---cCCeEEEecCCC
Q 016185 220 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS---VDNEIVLWEPKM 294 (394)
Q Consensus 220 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~---~dg~i~~~d~~~ 294 (394)
.-..+++||-.. .... .-......-.+++|- |..+++-. .|+.|.+|..+.
T Consensus 220 ~~RkirV~drEg-~Lns-----------------------~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 220 GTRKIRVYDREG-ALNS-----------------------TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred CceeEEEecccc-hhhc-----------------------ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 337899999873 2100 000011112234443 56666543 466799998665
Q ss_pred CCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEE---EeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEec
Q 016185 295 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI---GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 371 (394)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 371 (394)
.+ +....-.++....++..++|+.++ ..||+ ......|++|-+.+....+...+.... ... +.|+
T Consensus 276 L~------hg~f~l~~p~de~~ve~L~Wns~s--diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~--~~~--~~W~ 343 (1265)
T KOG1920|consen 276 LR------HGEFVLPFPLDEKEVEELAWNSNS--DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ--KAL--LMWD 343 (1265)
T ss_pred cc------ccccccCCcccccchheeeecCCC--CceeeeecccccceEEEEEecCeEEEEEEEEeccc--ccc--cccc
Confidence 43 222334455555568999999999 57776 444455999999887654444444221 112 7787
Q ss_pred cCC-CEEEEeccCCeEEEEEc
Q 016185 372 YDG-STILSCCEDGAIWRWDA 391 (394)
Q Consensus 372 ~~~-~~l~s~~~dg~i~iwd~ 391 (394)
|.. ..|..-..+|...++|+
T Consensus 344 p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 344 PVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CCCceeEEEEecCCcEEEEEE
Confidence 742 23333335666555554
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.47 E-value=0.00014 Score=64.48 Aligned_cols=237 Identities=15% Similarity=0.124 Sum_probs=121.6
Q ss_pred eeccCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 28 ~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
.+....-....+.++| +|++++.++++...||.....+....-+ -....|. +.++ .|+-..+
T Consensus 27 ~lg~~~~~p~~ls~np----ngr~v~V~g~geY~iyt~~~~r~k~~G~----------g~~~vw~--~~n~--yAv~~~~ 88 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNP----NGRFVLVCGDGEYEIYTALAWRNKAFGS----------GLSFVWS--SRNR--YAVLESS 88 (443)
T ss_dssp EEEE-SS--SEEEE-T----TSSEEEEEETTEEEEEETTTTEEEEEEE-----------SEEEE---TSSE--EEEE-TT
T ss_pred cCCCCCcCCeeEEECC----CCCEEEEEcCCEEEEEEccCCcccccCc----------eeEEEEe--cCcc--EEEEECC
Confidence 3334455688999999 7999999887778888844444322221 1235666 6554 6666668
Q ss_pred CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
+.|.|+.--+.+....++.. ..+..+-. +.+|...+ ++.|.+||+.+++
T Consensus 89 ~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~--------------------------~~~i~~yDw~~~~ 137 (443)
T PF04053_consen 89 STIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKS--------------------------SDFICFYDWETGK 137 (443)
T ss_dssp S-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEE--------------------------TTEEEEE-TTT--
T ss_pred CeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEEC--------------------------CCCEEEEEhhHcc
Confidence 88999743333333344422 12333322 56666666 5689999999999
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCc
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (394)
.++.+. .. +|..+.|++ ++.+++..+.+ .+.+++........ .+..........+..-...
T Consensus 138 ~i~~i~----v~-~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~------------~~~~g~e~~f~~~~E~~~~ 198 (443)
T PF04053_consen 138 LIRRID----VS-AVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAA------------IPEEGVEDAFELIHEISER 198 (443)
T ss_dssp EEEEES----S--E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHH------------BTTTB-GGGEEEEEEE-S-
T ss_pred eeeEEe----cC-CCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhccc------------ccccCchhceEEEEEecce
Confidence 999986 33 489999999 88888887754 67777765520000 0000011123344333677
Q ss_pred eEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecC
Q 016185 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 347 (394)
Q Consensus 268 i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 347 (394)
|.+..|.++.++-.... +|+. +..++ ...+..+ ..++.-+.+.+.. +.+.....|+.+..+.+..
T Consensus 199 IkSg~W~~d~fiYtT~~-~lkY--l~~Ge-------~~~i~~l---d~~~yllgy~~~~--~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 199 IKSGCWVEDCFIYTTSN-HLKY--LVNGE-------TGIIAHL---DKPLYLLGYLPKE--NRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -SEEEEETTEEEEE-TT-EEEE--EETTE-------EEEEEE----SS--EEEEEETTT--TEEEEE-TT--EEEEE--H
T ss_pred eEEEEEEcCEEEEEcCC-eEEE--EEcCC-------cceEEEc---CCceEEEEEEccC--CEEEEEECCCCEEEEEECH
Confidence 88899987766655555 6666 33332 1123332 3456667777755 4677777888888777653
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=0.00055 Score=54.13 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=60.4
Q ss_pred ceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec
Q 016185 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (394)
Q Consensus 49 ~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 127 (394)
|++++.|+.++ +++.+.++|++...+... +.|-+-+ ..++++. ++..|+.|+..+..|..+..++.+.+..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~------~~vk~~a-~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL------ETVKVRA-QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh------hhhccce-EEcCCCc-eEEEecCCCcEEEecccccceEEecccC
Confidence 56778888777 999999999877666532 2232222 2347888 9999999999999999998888887754
Q ss_pred CCceeEEEEcCCCCc
Q 016185 128 GDSINEIRTQPLKPS 142 (394)
Q Consensus 128 ~~~v~~~~~~~~~~~ 142 (394)
.+...+-+..|.++.
T Consensus 135 G~~f~sP~i~~g~~s 149 (354)
T KOG4649|consen 135 GGTFVSPVIAPGDGS 149 (354)
T ss_pred CceeccceecCCCce
Confidence 444444455553333
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.40 E-value=0.00059 Score=61.42 Aligned_cols=135 Identities=15% Similarity=0.138 Sum_probs=90.3
Q ss_pred cceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeE-----
Q 016185 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH----- 121 (394)
Q Consensus 48 ~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----- 121 (394)
.+++++.|+.-+ +++|+-..+.. ..++. ....+.+..++++ ++.. ++|.|+..|.|.++.++.+.+.
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~-~~~~~---~~~~~~~~~~~vs--~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEM-RKLKN---EGATGITCVRSVS--SVEY-LVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred CCceEEEecccceEEEEecCchhh-hcccc---cCccceEEEEEec--chhH-hhhhhcCCceEEeehhhccCCCcceee
Confidence 578999999888 99999655543 33331 1233334344444 6666 8999999999999988764321
Q ss_pred EEE-EecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc----EEEEeeccC
Q 016185 122 KSF-VGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI----CILIFAGAG 196 (394)
Q Consensus 122 ~~~-~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~----~~~~~~~~~ 196 (394)
... +.|...|++++|++ ++..+++|.. .|.|..-.+.... ..+.+.
T Consensus 117 t~~d~~~~~rVTal~Ws~-~~~k~ysGD~-------------------------~Gkv~~~~L~s~~~~~~~~q~il--- 167 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSK-NGMKLYSGDS-------------------------QGKVVLTELDSRQAFLSKSQEIL--- 167 (726)
T ss_pred ccccccCCceEEEEEecc-cccEEeecCC-------------------------CceEEEEEechhhhhccccceee---
Confidence 111 23778999999999 8899999998 9999988887621 112222
Q ss_pred CCcccEEEEEecCCCCeeEEeecc
Q 016185 197 GHRNEVLSVDFHPSDIYRIASCGM 220 (394)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~l~s~~~ 220 (394)
.....|..+... .+.+|++...
T Consensus 168 ~~ds~IVQlD~~--q~~LLVStl~ 189 (726)
T KOG3621|consen 168 SEDSEIVQLDYL--QSYLLVSTLT 189 (726)
T ss_pred ccCcceEEeecc--cceehHhhhh
Confidence 245778778776 4555555443
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.40 E-value=0.00051 Score=60.11 Aligned_cols=191 Identities=9% Similarity=-0.070 Sum_probs=93.9
Q ss_pred cceeeeccCCcEEEEEecCCcEEEEeeccC-----CCcccEEEEEecC----CCC---eeEEeeccCCcEEEEEccc-cc
Q 016185 167 SNCLRVGQDESVRLWNVQTGICILIFAGAG-----GHRNEVLSVDFHP----SDI---YRIASCGMDNTVKIWSMKE-FW 233 (394)
Q Consensus 167 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~i~~~~~~~----~~~---~~l~s~~~dg~v~iwd~~~-~~ 233 (394)
+.+++|-++|.+.|.|++....+..-...+ .....|+++.|.. +|+ -.+++|...|.+.+|.+.- ..
T Consensus 98 GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~ 177 (395)
T PF08596_consen 98 GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN 177 (395)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG
T ss_pred cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC
Confidence 445555559999999998777776633211 1345678888862 233 5788999999999998852 11
Q ss_pred eeeccccccCCCCCCCCccccccceeeeecCCCceEEEEE-e----------------------CcEEEEeecCCeEEEe
Q 016185 234 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-L----------------------GDFILSKSVDNEIVLW 290 (394)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~----------------------~~~l~~~~~dg~i~~~ 290 (394)
.... .........+.+.|..+.. + -.-++....+..++++
T Consensus 178 g~f~-----------------v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 178 GRFS-----------------VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp G-EE-----------------EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred CceE-----------------EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 1000 0001111123333333221 0 0124444568889999
Q ss_pred cCCCCCCCCCCCcceecccccCCCCCeEEEEEee---cCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeE
Q 016185 291 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC---DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ 367 (394)
Q Consensus 291 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 367 (394)
...+.+. ..+..........+.+.+ ......|++-..+|.|++|.+..-+......+........+..
T Consensus 241 ~~~~~k~---------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 241 KPPKSKG---------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -TT---E---------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred eCCCCcc---------cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 9887652 222221112223344432 1112578888999999999998865333333322223344556
Q ss_pred EEeccCCCEEEEeccC
Q 016185 368 TAMSYDGSTILSCCED 383 (394)
Q Consensus 368 ~~~s~~~~~l~s~~~d 383 (394)
..++++|..++-.+..
T Consensus 312 ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPS 327 (395)
T ss_dssp -EE-TTS-EEEE-SSS
T ss_pred cEECCCCCEEEEeCcc
Confidence 7788999987766543
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=0.00025 Score=64.19 Aligned_cols=290 Identities=14% Similarity=0.072 Sum_probs=158.6
Q ss_pred EEEecCCc-EEEEEcCCCceeEEeeecccCCcc--------cceE---------------EEEEEEc---CCCCcEEEEe
Q 016185 52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE--------ESFY---------------TVSWACN---VDGIPFLVAG 104 (394)
Q Consensus 52 las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~--------~~v~---------------~~~~~~~---~~~~~~l~s~ 104 (394)
|.||+..+ ++|+-+.+++.+..+..|....-. ..|. ...+++. .||+ +|+.-
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr-~~fin 147 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGR-YLFIN 147 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCcccee-EEEEe
Confidence 55666666 999999999988888766432110 0111 1111111 2566 56555
Q ss_pred e-cCCeEEEEECCCCeeEEEEE-ecCCceeEEEEc--CCCCcEEEEceeeeEEeeccceeeeeeecccee--eeccCCcE
Q 016185 105 G-INGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQ--PLKPSLVVSASKVIIISSLSLICLLLFIRSNCL--RVGQDESV 178 (394)
Q Consensus 105 ~-~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~--~~~~d~~i 178 (394)
. .+.+|..-++...++-+.+. .....+..++|. | ...+++.++... .=..+++..+ ..-..+.+
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p-~t~yv~~~~e~~---------~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP-RTGYVFCNGEFR---------IPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccC-CccEEEeCcccc---------cccCCCCCEeecccceeEEE
Confidence 4 35666666766655544443 123345555554 5 445555555400 0011112111 12235677
Q ss_pred EEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC----cEEEEEccccceeeccccccCCCCCCCCcccc
Q 016185 179 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 254 (394)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (394)
.+.|.++.+....+. -......++++| ++.++++.+.+. ++..-+....
T Consensus 218 SvID~etmeV~~qV~----Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~---------------------- 270 (635)
T PRK02888 218 TAVDAETMEVAWQVM----VDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAER---------------------- 270 (635)
T ss_pred EEEECccceEEEEEE----eCCCcccceECC-CCCEEEEeccCcccCcceeeeccccC----------------------
Confidence 788888777766665 233556788898 777777765322 1222221110
Q ss_pred ccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEE
Q 016185 255 QFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 334 (394)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 334 (394)
.-+..+ ....+..+.-+|++... .++.|.+.|..+.... ....+..++. ......+.++||++ .+++++
T Consensus 271 -d~~vvf--ni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~----~~~v~~yIPV-GKsPHGV~vSPDGk-ylyVan 339 (635)
T PRK02888 271 -DWVVVF--NIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANA----GSALTRYVPV-PKNPHGVNTSPDGK-YFIANG 339 (635)
T ss_pred -ceEEEE--chHHHHHhhhCCCEEEE--CCCEEEEEECCccccC----CcceEEEEEC-CCCccceEECCCCC-EEEEeC
Confidence 000000 00001111112555554 3678999998871000 0002233322 23456899999996 355566
Q ss_pred eCCCcEEEEEecCCCc----------eeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 335 NREGKIFVWELQSSPP----------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 335 ~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
..++++.|+|+.+.+. ....+.+. .......+|+++|....|-.-|..|..||+..
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 6799999999987531 12333331 23455689999999888889999999999864
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.38 E-value=2.7e-05 Score=68.46 Aligned_cols=89 Identities=16% Similarity=0.227 Sum_probs=67.3
Q ss_pred EEEECCCCeeEEE--E-EecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 111 RVIDVSNEKLHKS--F-VGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 111 ~vwd~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
.+|++...+..+. . -.....|.+++++| +...++.|.. ||+|.+||...+.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~-------------------------DgSiiLyD~~~~~ 292 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCE-------------------------DGSIILYDTTRGV 292 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEec-------------------------CCeEEEEEcCCCe
Confidence 4566655433211 1 13667889999999 6778888887 9999999987664
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
.... + ..-..+.++|+| ++..+++|+..|.+.+||+.-
T Consensus 293 t~~~-k----a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 293 TLLA-K----AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred eeee-e----ecccceEEEEcC-CCcEEEEEcCCceEEEEEeec
Confidence 3332 2 445678999999 999999999999999999976
No 330
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.36 E-value=0.00048 Score=56.86 Aligned_cols=219 Identities=12% Similarity=0.094 Sum_probs=123.3
Q ss_pred EEEEEcCCCCcEEEEeecCCe-EEEEECCCCeeEEEEEecCCce--eEEEEcCCCCcEEEEceeeeEEeeccceeeeeee
Q 016185 89 VSWACNVDGIPFLVAGGINGI-IRVIDVSNEKLHKSFVGHGDSI--NEIRTQPLKPSLVVSASKVIIISSLSLICLLLFI 165 (394)
Q Consensus 89 ~~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~ 165 (394)
++.. |.....++.+-.-|. ..+||..+++....+....+.- -.-.|++ ++.+|++.-.
T Consensus 10 ~a~~--p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEn---------------- 70 (305)
T PF07433_consen 10 VAAH--PTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTEN---------------- 70 (305)
T ss_pred eeeC--CCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEecc----------------
Confidence 4444 744447777777665 6789999998877765433221 1367999 6666665432
Q ss_pred ccceeeeccCCcEEEEEec-CCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCC
Q 016185 166 RSNCLRVGQDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 244 (394)
Q Consensus 166 ~~~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 244 (394)
=.....|.|-|||.. .-+.+.++. .|.-....+.+.| |+..|+.+. |-|.-- ..+++.
T Consensus 71 ----d~~~g~G~IgVyd~~~~~~ri~E~~---s~GIGPHel~l~p-DG~tLvVAN--GGI~Th-pd~GR~---------- 129 (305)
T PF07433_consen 71 ----DYETGRGVIGVYDAARGYRRIGEFP---SHGIGPHELLLMP-DGETLVVAN--GGIETH-PDSGRA---------- 129 (305)
T ss_pred ----ccCCCcEEEEEEECcCCcEEEeEec---CCCcChhhEEEcC-CCCEEEEEc--CCCccC-cccCce----------
Confidence 011226899999998 556677776 5666667888999 887777763 222110 000000
Q ss_pred CCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceeccc--c--cCCCCCeEEE
Q 016185 245 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK--Y--PVPECDIWFI 320 (394)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~--~--~~~~~~i~~~ 320 (394)
.|=....+..+.+.|..+++ .+.+ + ..|..+|..+
T Consensus 130 --------------------------------kLNl~tM~psL~~ld~~sG~---------ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 130 --------------------------------KLNLDTMQPSLVYLDARSGA---------LLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred --------------------------------ecChhhcCCceEEEecCCCc---------eeeeeecCccccccceeeE
Confidence 00111223334445555554 2222 2 2255577888
Q ss_pred EEeecCCcceEEEEe-CCCc-------EEEEEecCCCceeeEEec---cCCccCCeeEEEeccCCCEEEEec-cCCeEEE
Q 016185 321 KFSCDFHYNAAAIGN-REGK-------IFVWELQSSPPVLIARLS---HAQSKSPIRQTAMSYDGSTILSCC-EDGAIWR 388 (394)
Q Consensus 321 ~~~~~~~~~~l~~~~-~dg~-------i~iwd~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~i 388 (394)
++.+++ .++.+. ..|. |-+++. ++.......+ ...-.+.+-+|++++++.++++.+ .-+.+.+
T Consensus 169 a~~~~G---~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 169 AVDGDG---TVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred EecCCC---cEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 888887 233332 2221 222222 2211111111 113347899999999998886655 6678999
Q ss_pred EEcCC
Q 016185 389 WDAIP 393 (394)
Q Consensus 389 wd~~~ 393 (394)
||..+
T Consensus 244 ~d~~t 248 (305)
T PF07433_consen 244 WDAAT 248 (305)
T ss_pred EECCC
Confidence 98765
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=3.3e-05 Score=70.59 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=70.9
Q ss_pred eEEEEEeeCCCcceEEEEecC----Cc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 37 YAVVFNFIDSRYFNVFATVGG----NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 37 ~~i~~sp~~~~~~~~las~~~----d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
+-..|+| ...++|.++- ++ |.||- .+|++-..+.. +. .+.+++|. |..- .|+.|-.-|.+.
T Consensus 19 ti~SWHP----sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~---P~---hatSLCWH--pe~~-vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 19 TISSWHP----SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY---PV---HATSLCWH--PEEF-VLAQGWEMGVSD 84 (1416)
T ss_pred cccccCC----CCceeEEEEecCCCCceEEEEe-cCCCCCccccc---ce---ehhhhccC--hHHH-HHhhccccceeE
Confidence 3356888 5667777652 33 88887 67764332221 11 23347776 7766 888999999999
Q ss_pred EEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEcee
Q 016185 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK 149 (394)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 149 (394)
+|...+.+.......|..+|..+.|+| +++.++++..
T Consensus 85 v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~ 121 (1416)
T KOG3617|consen 85 VQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDN 121 (1416)
T ss_pred EEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCC
Confidence 999877666555567999999999999 8899999998
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.33 E-value=0.00059 Score=62.28 Aligned_cols=290 Identities=13% Similarity=0.090 Sum_probs=143.8
Q ss_pred ceEEEEecCCcEEEEEcCCCceeEEeeeccc-CCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec
Q 016185 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVD-EDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (394)
Q Consensus 49 ~~~las~~~d~i~vw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 127 (394)
+.+++....+.+.-.|..+|+.+-....... ......+..-.... .++. .++.++.+|.|.-+|.++++.+..+...
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~-~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPR-KVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCC-eEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 4444443344488899999987655442111 00000110000010 1214 6888889999999999999998887643
Q ss_pred CCc-----ee-EEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCc--
Q 016185 128 GDS-----IN-EIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHR-- 199 (394)
Q Consensus 128 ~~~-----v~-~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-- 199 (394)
... +. ...+. + .+++.++. ...+...+.++.+..+|..+|+.+..+.......
T Consensus 140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~----------------~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~ 200 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--K-KLVIIGSS----------------GAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA 200 (488)
T ss_pred CCcCcceEecCCCEEE--C-CEEEEecc----------------ccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC
Confidence 221 11 11111 1 22333221 0011112236889999999999888775310000
Q ss_pred ---------------ccE-EEEEecCCCCeeEEeeccCC------------------cEEEEEccccceeeccccccCCC
Q 016185 200 ---------------NEV-LSVDFHPSDIYRIASCGMDN------------------TVKIWSMKEFWTYVEKSFTWTDL 245 (394)
Q Consensus 200 ---------------~~i-~~~~~~~~~~~~l~s~~~dg------------------~v~iwd~~~~~~~~~~~~~~~~~ 245 (394)
..+ ...++++ .+..++.++.++ .|.-+|..+++..-........
T Consensus 201 ~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~- 278 (488)
T cd00216 201 FPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHD- 278 (488)
T ss_pred CCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCC-
Confidence 001 1234444 445566666554 6888888886543322110000
Q ss_pred CCCCCccccccceeeeecCCCc-eEEEE-EeCc---EEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE
Q 016185 246 PSKFPTKYVQFPVFIASVHSNY-VDCNR-WLGD---FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 320 (394)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~-~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (394)
...+.....+ +..+. .++. .++.++.+|.+..+|.++++. +-+.... ...+
T Consensus 279 ------------~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~---------~W~~~~~---~~~~ 334 (488)
T cd00216 279 ------------LWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL---------ISARPEV---EQPM 334 (488)
T ss_pred ------------CcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE---------eeEeEee---cccc
Confidence 0000000000 11111 1232 677888899999999999873 2211110 0012
Q ss_pred EEeecCCcceEEE------------------EeCCCcEEEEEecCCCceeeEEeccCCcc------CCe--eEEEeccCC
Q 016185 321 KFSCDFHYNAAAI------------------GNREGKIFVWELQSSPPVLIARLSHAQSK------SPI--RQTAMSYDG 374 (394)
Q Consensus 321 ~~~~~~~~~~l~~------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~v--~~~~~s~~~ 374 (394)
+.+| + .++. ...+|.|.-.|+.+++..-...+. .+. .+. ..+.. .+
T Consensus 335 ~~~~-~---~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~--~~~~~~~~g~~~~~~~~~~--~g 406 (488)
T cd00216 335 AYDP-G---LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREG--TIRDSWNIGFPHWGGSLAT--AG 406 (488)
T ss_pred ccCC-c---eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCC--ccccccccCCcccCcceEe--cC
Confidence 2222 1 1222 224677888888887532222222 111 111 11222 45
Q ss_pred CEEEEeccCCeEEEEEcCC
Q 016185 375 STILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 375 ~~l~s~~~dg~i~iwd~~~ 393 (394)
..|+.++.||.|+.+|.++
T Consensus 407 ~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 407 NLVFAGAADGYFRAFDATT 425 (488)
T ss_pred CeEEEECCCCeEEEEECCC
Confidence 6888889999999998764
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.30 E-value=5.6e-06 Score=73.80 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=88.9
Q ss_pred eEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecC
Q 016185 268 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 347 (394)
Q Consensus 268 i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 347 (394)
.+|++..+++++.|+.-|.+++|+...++. ...+..+....+.....+++. .++|.|+..|.|.++.+..
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~--------~~~~~~~~~~~~~~~~vs~~e--~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEM--------RKLKNEGATGITCVRSVSSVE--YLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhh--------hcccccCccceEEEEEecchh--HhhhhhcCCceEEeehhhc
Confidence 456666699999999999999999887753 222333345566777788887 5899999999999999987
Q ss_pred CCceeeEEec--cCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 348 SPPVLIARLS--HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 348 ~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
..+.....+. +..|...|++++|++++..+.+|...|+|..-.+.
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 6544333333 34578999999999999999999999999877664
No 334
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.29 E-value=0.0018 Score=56.59 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=63.2
Q ss_pred EEEEEeeCCCcceEEEEecCCc-EEE---EEcC-----CCceeEEeeecccCCcccceEEEEEEEc---------CCCCc
Q 016185 38 AVVFNFIDSRYFNVFATVGGNR-VTV---YQCL-----EGGVIAALQSYVDEDKEESFYTVSWACN---------VDGIP 99 (394)
Q Consensus 38 ~i~~sp~~~~~~~~las~~~d~-i~v---w~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~ 99 (394)
.++.+| ++++||.+..++ +.+ |+.. ++.......+.......+.|+++.|-+- +|..
T Consensus 6 ~isls~----~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~- 80 (415)
T PF14655_consen 6 SISLSP----DGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT- 80 (415)
T ss_pred eEEecC----CCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE-
Confidence 456777 799999998888 333 5331 1222233333333233368888877644 4555
Q ss_pred EEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcC
Q 016185 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP 138 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 138 (394)
.++.|..+|.|++|.. +|..+..-.-|..+|..+.+..
T Consensus 81 ~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 81 CIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 9999999999999994 6766655556888898888753
No 335
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.26 E-value=0.0015 Score=55.05 Aligned_cols=237 Identities=13% Similarity=0.054 Sum_probs=127.1
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeecc
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQ 174 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
..++ .|+.|..+| +.+++.........+. +...|..+...| +-+.++.-+
T Consensus 5 ~~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-------------------------- 54 (275)
T PF00780_consen 5 SWGD-RLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-------------------------- 54 (275)
T ss_pred cCCC-EEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc--------------------------
Confidence 3455 899999888 8999983332222222 233499999998 666666666
Q ss_pred CCcEEEEEecCCcEEEEee-----------ccCCCcccEEEEE-ecCCCCeeEEeeccCCcEEEEEccccceeecccccc
Q 016185 175 DESVRLWNVQTGICILIFA-----------GAGGHRNEVLSVD-FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 242 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~-----------~~~~~~~~i~~~~-~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 242 (394)
|+.+.++++..-....... ........+...+ -....+...+......+|.+|.+.......
T Consensus 55 d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f------ 128 (275)
T PF00780_consen 55 DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSF------ 128 (275)
T ss_pred CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccc------
Confidence 8999999987544333100 0001334455555 111133344444455689999887731100
Q ss_pred CCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCccee---cccccCCCCCeEE
Q 016185 243 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI---LQKYPVPECDIWF 319 (394)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~i~~ 319 (394)
......+. -+..+.++.|.++.++.+..+ ...+.|+.++........... .........++..
T Consensus 129 ------------~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 194 (275)
T PF00780_consen 129 ------------SKLLKEIS-LPDPPSSIAFLGNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGI 194 (275)
T ss_pred ------------cceeEEEE-cCCCcEEEEEeCCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEE
Confidence 01222222 347788999998888887744 478889886643111000000 0000111223333
Q ss_pred EEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 320 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 320 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
+.... + .+|++- |..-.+.|.. +++.....+... ..+.++++. ..+|+..+.+ .|.||++.+
T Consensus 195 ~~~~~-~--e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~---~~p~~~~~~--~pyli~~~~~-~iEV~~~~~ 256 (275)
T PF00780_consen 195 FQLSD-N--EFLLCY--DNIGVFVNKN-GEPSRKSTIQWS---SAPQSVAYS--SPYLIAFSSN-SIEVRSLET 256 (275)
T ss_pred EEeCC-c--eEEEEe--cceEEEEcCC-CCcCcccEEEcC---CchhEEEEE--CCEEEEECCC-EEEEEECcC
Confidence 33332 3 355543 3333444443 322222333332 456677774 4588877664 599999875
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00027 Score=64.98 Aligned_cols=190 Identities=11% Similarity=0.094 Sum_probs=110.8
Q ss_pred CCcEEEEEecCCcEEEEeeccCCCccc-EEEEEecCCCCeeEEeeccCCc-----EEEEEccccceeeccccccCCCCCC
Q 016185 175 DESVRLWNVQTGICILIFAGAGGHRNE-VLSVDFHPSDIYRIASCGMDNT-----VKIWSMKEFWTYVEKSFTWTDLPSK 248 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~ 248 (394)
+|.|.+.+- .-+.++.++ .+... |..+.... ..++|++.+.|+. +++|++...+.. +
T Consensus 44 ~G~V~~Ln~-s~~~~~~fq---a~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n------------~ 106 (933)
T KOG2114|consen 44 DGRVVILNS-SFQLIRGFQ---AYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN------------N 106 (933)
T ss_pred cccEEEecc-cceeeehhe---ecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCC------------C
Confidence 999888873 233445566 56666 44444443 5567887776654 899999883210 0
Q ss_pred CCccccccceeeee--cCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEee
Q 016185 249 FPTKYVQFPVFIAS--VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 324 (394)
Q Consensus 249 ~~~~~~~~~~~~~~--~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 324 (394)
.+.-.....+.... ..+.++.+++.+ -+.++.|-.+|.|..+.=+-.+... . ...-......+|+.+++..
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg---s--r~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG---S--RQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc---c--ceeeeccCCCCceeeEEec
Confidence 00000000111111 124556667766 5688999999999998643221100 0 1111122356899999999
Q ss_pred cCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 325 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 325 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
++.. .+.+++ ...|.+|.+.... .....+. .|...+.+..+++...-+++++ +..|.+|+..
T Consensus 182 d~~s-~lFv~T-t~~V~~y~l~gr~-p~~~~ld--~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd 243 (933)
T KOG2114|consen 182 DGKS-VLFVAT-TEQVMLYSLSGRT-PSLKVLD--NNGISLNCSSFSDGTYQFICAG-SEFLYFYDSD 243 (933)
T ss_pred CCce-eEEEEe-cceeEEEEecCCC-cceeeec--cCCccceeeecCCCCccEEEec-CceEEEEcCC
Confidence 9963 233333 4579999998543 2344455 6778899989887655455554 3367777754
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.25 E-value=1.8e-07 Score=81.96 Aligned_cols=192 Identities=15% Similarity=0.196 Sum_probs=128.0
Q ss_pred eeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecC----Cc-EEEEEcCCC--ceeEEeee
Q 016185 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG----NR-VTVYQCLEG--GVIAALQS 76 (394)
Q Consensus 4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~----d~-i~vw~~~~~--~~~~~~~~ 76 (394)
.|+|-..+.+.+.....+...-..+..+|....++++|++. |.+.||+|-+ +. +.|||+.++ .+....+-
T Consensus 73 lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL---Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL---DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhccccCceEEeecCCcccccceecccccccccccccccc---cHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 46777777777776666555545556789999999999985 5678888854 33 999999877 33332221
Q ss_pred cccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCe-eEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEee
Q 016185 77 YVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISS 155 (394)
Q Consensus 77 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~ 155 (394)
.. .......+++|- .+-+ ++.+|.....+.++|++... ....+ .+..+..+...|-.++++++-.
T Consensus 150 s~--~~l~gqns~cwl--rd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~------- 215 (783)
T KOG1008|consen 150 SS--STLDGQNSVCWL--RDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS------- 215 (783)
T ss_pred cc--ccccCccccccc--cCcc-hhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-------
Confidence 11 234455678887 7777 89999999999999987321 11222 2334566777776667887766
Q ss_pred ccceeeeeeeccceeeeccCCcEEEEEe-cCC-cEEEEeec-cCCCcccEEEEEecCCCCeeEEeeccC-CcEEEEEccc
Q 016185 156 LSLICLLLFIRSNCLRVGQDESVRLWNV-QTG-ICILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKE 231 (394)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~d~~i~vwd~-~~~-~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~s~~~d-g~v~iwd~~~ 231 (394)
||.|.+||. ++- .++..+.. .......+..++|.|....++++...| ++|+++|+..
T Consensus 216 -------------------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 216 -------------------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred -------------------cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 899999993 322 22222220 001223489999999666667777654 7899999876
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.25 E-value=7.7e-06 Score=71.76 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=59.8
Q ss_pred CCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 313 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
....+.+++++|+. ..++.|+.||+|.+||...+... +. ...-.++.++|+|+|..+++|+..|.+.+||+.
T Consensus 258 L~s~v~~ca~sp~E--~kLvlGC~DgSiiLyD~~~~~t~----~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCARSPSE--DKLVLGCEDGSIILYDTTRGVTL----LA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEecCccc--ceEEEEecCCeEEEEEcCCCeee----ee--eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 34578999999999 68999999999999999876321 11 222467889999999999999999999999985
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=5.1e-05 Score=69.45 Aligned_cols=108 Identities=9% Similarity=0.151 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcEEEEee----cCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeee
Q 016185 89 VSWACNVDGIPFLVAGG----INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLF 164 (394)
Q Consensus 89 ~~~~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~ 164 (394)
.+|. |... +++.++ ..|.|.||- ++|++.+.... .-.+++++|+| ..-+|+.|-.
T Consensus 21 ~SWH--PseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHp-e~~vLa~gwe--------------- 79 (1416)
T KOG3617|consen 21 SSWH--PSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHP-EEFVLAQGWE--------------- 79 (1416)
T ss_pred cccC--CCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccCh-HHHHHhhccc---------------
Confidence 5566 5565 666664 458899985 67776544331 11256799999 7778888888
Q ss_pred eccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 165 IRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 165 ~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
-|.+.+|...+.+.-.... .|..+|..+.|++ +|..++++..-|.|.+|....
T Consensus 80 ----------~g~~~v~~~~~~e~htv~~---th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 80 ----------MGVSDVQKTNTTETHTVVE---THPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ----------cceeEEEecCCceeeeecc---CCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 9999999987665544444 7999999999999 999999999999999998874
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.20 E-value=0.0022 Score=53.73 Aligned_cols=260 Identities=11% Similarity=0.026 Sum_probs=132.0
Q ss_pred EEEEEeeCCCcceEEEEecC-----------CcEEEEEcCCCceeEEeeeccc-CCc-ccceEEEEEEEcCCCCcEEEEe
Q 016185 38 AVVFNFIDSRYFNVFATVGG-----------NRVTVYQCLEGGVIAALQSYVD-EDK-EESFYTVSWACNVDGIPFLVAG 104 (394)
Q Consensus 38 ~i~~sp~~~~~~~~las~~~-----------d~i~vw~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~l~s~ 104 (394)
.+..+| +++.+++++. |-|.+||..+-....++..... +.. .......+++ .||+ +++..
T Consensus 40 ~~~~sp----dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls--~dgk-~~~V~ 112 (342)
T PF06433_consen 40 NVALSP----DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALS--ADGK-FLYVQ 112 (342)
T ss_dssp EEEE-T----TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE---TTSS-EEEEE
T ss_pred ceeECC----CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEc--cCCc-EEEEE
Confidence 366787 6777776531 2299999998877766553221 000 0111123333 8888 66655
Q ss_pred --ecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEE
Q 016185 105 --GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWN 182 (394)
Q Consensus 105 --~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd 182 (394)
+-...|.|-|+..++.+.++... + |.-..|..+.-+.+-+. ||.+.-..
T Consensus 113 N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~-------------------------DGsl~~v~ 163 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCG-------------------------DGSLLTVT 163 (342)
T ss_dssp EESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEET-------------------------TSCEEEEE
T ss_pred ccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEec-------------------------CCceEEEE
Confidence 34567888898888888777632 1 11122323344555555 99999998
Q ss_pred ec-CCcEEEEeec-cCCCcccEE-EEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee
Q 016185 183 VQ-TGICILIFAG-AGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 259 (394)
Q Consensus 183 ~~-~~~~~~~~~~-~~~~~~~i~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (394)
+. .|+..+.... ......++. .-++.. .+..++--+.+|.|+--|+............... . ...-.
T Consensus 164 Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t--~-------~e~~~ 233 (342)
T PF06433_consen 164 LDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT--D-------AEKAD 233 (342)
T ss_dssp ETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS---H-------HHHHT
T ss_pred ECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccC--c-------ccccc
Confidence 87 4554422211 111222222 223333 3334555678899999888874322211110000 0 00000
Q ss_pred eeecCCCceEEEEEe--CcEEEEeec--------CC--eEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCC
Q 016185 260 IASVHSNYVDCNRWL--GDFILSKSV--------DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 327 (394)
Q Consensus 260 ~~~~~~~~i~~~~~~--~~~l~~~~~--------dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (394)
.+ -++.-.-++++ .+.|++.-. |+ .|-++|+.+.+ .+.+++.. .++.+|..+.+.+
T Consensus 234 ~W--rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k---------rv~Ri~l~-~~~~Si~Vsqd~~ 301 (342)
T PF06433_consen 234 GW--RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK---------RVARIPLE-HPIDSIAVSQDDK 301 (342)
T ss_dssp TE--EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE---------EEEEEEEE-EEESEEEEESSSS
T ss_pred Cc--CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe---------EEEEEeCC-CccceEEEccCCC
Confidence 00 01111123332 222222111 22 36667777766 55555542 3577899999988
Q ss_pred cceEEEEeCCCcEEEEEecCCCceeeEEec
Q 016185 328 YNAAAIGNREGKIFVWELQSSPPVLIARLS 357 (394)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (394)
+.+++....++.|.+||..+++ .+.+++
T Consensus 302 P~L~~~~~~~~~l~v~D~~tGk--~~~~~~ 329 (342)
T PF06433_consen 302 PLLYALSAGDGTLDVYDAATGK--LVRSIE 329 (342)
T ss_dssp -EEEEEETTTTEEEEEETTT----EEEEE-
T ss_pred cEEEEEcCCCCeEEEEeCcCCc--EEeehh
Confidence 5444455678999999999984 666666
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.18 E-value=0.0022 Score=52.11 Aligned_cols=208 Identities=8% Similarity=0.059 Sum_probs=109.9
Q ss_pred CcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec-CCceeEEEEcCCCCcEEEEceeeeEEeeccce
Q 016185 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKVIIISSLSLI 159 (394)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~ 159 (394)
+-...+..++|. |+...+.++....+.|..++. +|+.++++.-. .+....|++.. ++.++++.-.
T Consensus 19 g~~~e~SGLTy~--pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er---------- 84 (248)
T PF06977_consen 19 GILDELSGLTYN--PDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEER---------- 84 (248)
T ss_dssp T--S-EEEEEEE--TTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETT----------
T ss_pred CccCCccccEEc--CCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcC----------
Confidence 445568899998 876647778888899998996 58888887633 34578888876 6666666656
Q ss_pred eeeeeeccceeeeccCCcEEEEEecCCc------EEEEee--ccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 160 CLLLFIRSNCLRVGQDESVRLWNVQTGI------CILIFA--GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 160 ~~~~~~~~~~~~~~~d~~i~vwd~~~~~------~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
++.+.++++.... ....+. ....+...+-.++|+| .++.|+.+-...-..+|.+..
T Consensus 85 ---------------~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 85 ---------------DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp ---------------TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEES
T ss_pred ---------------CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEcc
Confidence 8889888884321 112222 1113556789999999 555555666666677777765
Q ss_pred cceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecc
Q 016185 232 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ 308 (394)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 308 (394)
...... ..................+.++.++ +.+++....+..|..+|.. ++ .+.
T Consensus 149 ~~~~~~------------~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~---------~~~ 206 (248)
T PF06977_consen 149 FPGGFD------------LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GR---------VVS 206 (248)
T ss_dssp TT-SS--------------EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT------------EEE
T ss_pred ccCccc------------eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CC---------EEE
Confidence 110000 0000000011112233446777787 6678888888889889844 32 111
Q ss_pred cccC---------CCCCeEEEEEeecCCcceEEEEeCCCcEEEE
Q 016185 309 KYPV---------PECDIWFIKFSCDFHYNAAAIGNREGKIFVW 343 (394)
Q Consensus 309 ~~~~---------~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iw 343 (394)
.+.. .-.+...|+|.++| .|...++-+..++|
T Consensus 207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G---~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 207 SLSLDRGFHGLSKDIPQPEGIAFDPDG---NLYIVSEPNLFYRF 247 (248)
T ss_dssp EEE-STTGGG-SS---SEEEEEE-TT-----EEEEETTTEEEEE
T ss_pred EEEeCCcccCcccccCCccEEEECCCC---CEEEEcCCceEEEe
Confidence 1111 11346789999988 35555666655554
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.16 E-value=0.0037 Score=53.88 Aligned_cols=225 Identities=12% Similarity=0.100 Sum_probs=127.3
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEE-EEEcCC---CCcEEEEeec---------C-CeEEEEECCCC----eeE
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVS-WACNVD---GIPFLVAGGI---------N-GIIRVIDVSNE----KLH 121 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~---~~~~l~s~~~---------d-g~i~vwd~~~~----~~~ 121 (394)
|++.|..+.+.+..+.-. ..+.+.+++ +.+..+ ...+++.|.. . |.|.++++.+. ..+
T Consensus 4 i~l~d~~~~~~~~~~~l~----~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 4 IRLVDPTTFEVLDSFELE----PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp EEEEETTTSSEEEEEEEE----TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred EEEEeCCCCeEEEEEECC----CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 788888888776655532 233444443 333332 1447887753 2 99999999884 122
Q ss_pred EEE--EecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc-EEEEeeccCCC
Q 016185 122 KSF--VGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI-CILIFAGAGGH 198 (394)
Q Consensus 122 ~~~--~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~ 198 (394)
..+ ....++|++++-.. +. |+.+. .+.|.+|++...+ ....-.. ..
T Consensus 80 ~~i~~~~~~g~V~ai~~~~--~~-lv~~~--------------------------g~~l~v~~l~~~~~l~~~~~~--~~ 128 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSFN--GR-LVVAV--------------------------GNKLYVYDLDNSKTLLKKAFY--DS 128 (321)
T ss_dssp EEEEEEEESS-EEEEEEET--TE-EEEEE--------------------------TTEEEEEEEETTSSEEEEEEE---B
T ss_pred EEEEEEeecCcceEhhhhC--CE-EEEee--------------------------cCEEEEEEccCcccchhhhee--cc
Confidence 222 23578899988663 34 55444 6789999998887 4443331 13
Q ss_pred cccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--Cc
Q 016185 199 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 276 (394)
Q Consensus 199 ~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 276 (394)
...+.++... +++++.|.....+.++.++.... ......-...+..+.++.+- ++
T Consensus 129 ~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~--------------------~l~~va~d~~~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 129 PFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN--------------------KLILVARDYQPRWVTAAEFLVDED 185 (321)
T ss_dssp SSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE---------------------EEEEEEESS-BEEEEEEEE-SSS
T ss_pred eEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC--------------------EEEEEEecCCCccEEEEEEecCCc
Confidence 3466777665 35888998888898886654111 01112223345567787775 56
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCC--cceecccccCCCCCeEEE---EEeec--CCc----ceEEEEeCCCcEEEE
Q 016185 277 FILSKSVDNEIVLWEPKMKEQSPGEG--TADILQKYPVPECDIWFI---KFSCD--FHY----NAAAIGNREGKIFVW 343 (394)
Q Consensus 277 ~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~---~~~~~--~~~----~~l~~~~~dg~i~iw 343 (394)
.++.+..+|.+.++............ .......+... ..|+++ .+.|. ... ..++.++.+|.|...
T Consensus 186 ~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 186 TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 99999999999999887432211111 12222333332 346666 44442 211 247888889998844
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.14 E-value=0.0045 Score=54.09 Aligned_cols=275 Identities=11% Similarity=0.071 Sum_probs=132.7
Q ss_pred cEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEE-Eec----------
Q 016185 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGH---------- 127 (394)
Q Consensus 59 ~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~---------- 127 (394)
.+.|||+.+++...... ....+....|+ |+|+ .++-.. ++.|.+++..+++..+.- .+.
T Consensus 24 ~y~i~d~~~~~~~~l~~------~~~~~~~~~~s--P~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 24 DYYIYDIETGEITPLTP------PPPKLQDAKWS--PDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEETTTTEEEESS-------EETTBSEEEE---SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred eEEEEecCCCceEECcC------Cccccccceee--cCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccce
Confidence 38899998876533333 14456678888 9998 666554 578999998777443321 120
Q ss_pred ------CCceeEEEEcCCCCcEEEEcee------eeEEeeccceeeeee---eccceeeeccCC--cEEEEEecCCcEEE
Q 016185 128 ------GDSINEIRTQPLKPSLVVSASK------VIIISSLSLICLLLF---IRSNCLRVGQDE--SVRLWNVQTGICIL 190 (394)
Q Consensus 128 ------~~~v~~~~~~~~~~~~l~s~~~------~i~~~~~~~~~~~~~---~~~~~~~~~~d~--~i~vwd~~~~~~~~ 190 (394)
-+.-..+-|+| ++..|+.... .+.+.........+. .-..=.+|..+. .+.|+|+.+++...
T Consensus 94 vyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~ 172 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTE 172 (353)
T ss_dssp HHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCE
T ss_pred eccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEE
Confidence 01225688999 6666665543 111111111000000 001112233334 45567887776532
Q ss_pred Ee-e-ccCCCcccEEEEEecCCCCeeEEee--ccC---CcEEEEEccccceeeccccccCCCCCCCCccccccceeeeec
Q 016185 191 IF-A-GAGGHRNEVLSVDFHPSDIYRIASC--GMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 263 (394)
Q Consensus 191 ~~-~-~~~~~~~~i~~~~~~~~~~~~l~s~--~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (394)
.- . ........+..+.|.+ ++..|+.. ..+ ..+.++|..++...... ...
T Consensus 173 ~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~----------------------~e~ 229 (353)
T PF00930_consen 173 LDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL----------------------EET 229 (353)
T ss_dssp E---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE----------------------EEE
T ss_pred eeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEE----------------------Eec
Confidence 11 1 0113466789999998 77633332 222 34666677653321110 111
Q ss_pred CCCce---EEEEE---e-CcEEEEeecCCe--EEEecCCCCCCCCCCCcceecccccCCCCCeEE-EEEeecCCcceEEE
Q 016185 264 HSNYV---DCNRW---L-GDFILSKSVDNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWF-IKFSCDFHYNAAAI 333 (394)
Q Consensus 264 ~~~~i---~~~~~---~-~~~l~~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~~ 333 (394)
....| ....+ . ..++.....+|. |.+++...+. ...+....-.|.. +.++++++ .+.++
T Consensus 230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~----------~~~lT~G~~~V~~i~~~d~~~~-~iyf~ 298 (353)
T PF00930_consen 230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK----------PRQLTSGDWEVTSILGWDEDNN-RIYFT 298 (353)
T ss_dssp SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE----------EEESS-SSS-EEEEEEEECTSS-EEEEE
T ss_pred CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc----------eeccccCceeecccceEcCCCC-EEEEE
Confidence 11111 12222 1 345555556665 4445555442 3344444455644 66777765 45556
Q ss_pred EeCCC--cEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEe
Q 016185 334 GNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 380 (394)
Q Consensus 334 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 380 (394)
+..++ .-.+|.+.-........+... ...-..+.|||++++++-.
T Consensus 299 a~~~~p~~r~lY~v~~~~~~~~~~LT~~--~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 299 ANGDNPGERHLYRVSLDSGGEPKCLTCE--DGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ESSGGTTSBEEEEEETTETTEEEESSTT--SSTTEEEEE-TTSSEEEEE
T ss_pred ecCCCCCceEEEEEEeCCCCCeEeccCC--CCCceEEEECCCCCEEEEE
Confidence 66532 344444433311234455421 1111689999999988744
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.11 E-value=0.0047 Score=53.24 Aligned_cols=232 Identities=12% Similarity=0.140 Sum_probs=127.2
Q ss_pred CeEEEEECCCCeeEEEEEec-CCceeEEE---EcCC---CCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEE
Q 016185 108 GIIRVIDVSNEKLHKSFVGH-GDSINEIR---TQPL---KPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRL 180 (394)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~-~~~v~~~~---~~~~---~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 180 (394)
..|++.|..+.+.+.++.-. ...+.+++ +..+ ...+++.|..... .+.. ....|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~-------------~~~~--~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNY-------------GEDP--EPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE---------------TTSS--S-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccc-------------cccc--cccCcEEEE
Confidence 36888998888777666532 23344443 4331 1467777664000 0000 001289999
Q ss_pred EEecCC----cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccc
Q 016185 181 WNVQTG----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 256 (394)
Q Consensus 181 wd~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (394)
+++... ..+..+.. ....++|++++-. ++.++++. .+.|.+|++...+. .
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~---------------------l 120 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKT---------------------L 120 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSS---------------------E
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh--CCEEEEee--cCEEEEEEccCccc---------------------c
Confidence 999884 22222211 1357889999877 45533333 47899999998330 0
Q ss_pred ceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC
Q 016185 257 PVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 336 (394)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 336 (394)
...........+.++...+++++.|.....+.++..+.... ....+.+ ......++++.|-+++ ..++.+..
T Consensus 121 ~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~-----~l~~va~-d~~~~~v~~~~~l~d~--~~~i~~D~ 192 (321)
T PF03178_consen 121 LKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENN-----KLILVAR-DYQPRWVTAAEFLVDE--DTIIVGDK 192 (321)
T ss_dssp EEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE------EEEEEE-ESS-BEEEEEEEE-SS--SEEEEEET
T ss_pred hhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCC-----EEEEEEe-cCCCccEEEEEEecCC--cEEEEEcC
Confidence 11112223347888888899999999988888875443110 1112222 2234468888888777 48999999
Q ss_pred CCcEEEEEecCCC-----ce-eeEEeccCCccCCeeEE---EeccC--CC------EEEEeccCCeEEE
Q 016185 337 EGKIFVWELQSSP-----PV-LIARLSHAQSKSPIRQT---AMSYD--GS------TILSCCEDGAIWR 388 (394)
Q Consensus 337 dg~i~iwd~~~~~-----~~-~~~~~~~~~~~~~v~~~---~~s~~--~~------~l~s~~~dg~i~i 388 (394)
+|.+.++...... .. .+.....-.....|+++ .+.|. +. .++.++.+|.|.+
T Consensus 193 ~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 193 DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9999999987421 11 11111111223567777 55552 22 4777888998873
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.10 E-value=0.00073 Score=46.40 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=72.0
Q ss_pred eEEEEEE-EcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeee
Q 016185 86 FYTVSWA-CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLF 164 (394)
Q Consensus 86 v~~~~~~-~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~ 164 (394)
|.+++++ ++.+|...|++|+.|..|++|+- .+.+.++.. .+.|.++.-.. . ..++.+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~-~-~~F~Y~l~--------------- 61 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG-G-GRFAYALA--------------- 61 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC-C-CEEEEEec---------------
Confidence 4455554 34667779999999999999983 467777774 45677777765 3 56777777
Q ss_pred eccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCC---CeeEEeeccCCcEE
Q 016185 165 IRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD---IYRIASCGMDNTVK 225 (394)
Q Consensus 165 ~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~s~~~dg~v~ 225 (394)
+|+|-+|+- .+.+..++ .+..+.++++...+ ...|++|-.+|.|-
T Consensus 62 ----------NGTVGvY~~--~~RlWRiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 62 ----------NGTVGVYDR--SQRLWRIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----------CCEEEEEeC--cceeeeec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999999974 44455555 34446677665312 24688888888764
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.09 E-value=0.0079 Score=55.05 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=37.0
Q ss_pred CcEEEEEecCCcEEEEeeccCCCc--------ccE-EEEEecCCCC---eeEEeeccCCcEEEEEccccceee
Q 016185 176 ESVRLWNVQTGICILIFAGAGGHR--------NEV-LSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWTYV 236 (394)
Q Consensus 176 ~~i~vwd~~~~~~~~~~~~~~~~~--------~~i-~~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~ 236 (394)
+.|.-+|..+|+....+... .+. .++ ..+. ..++ ..++.++.+|.+...|.++++..-
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~~~~--~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLADIK--PKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEEecc--ccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 37999999999988877521 111 111 1111 0122 367888899999999999976533
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.99 E-value=0.0019 Score=60.91 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=92.0
Q ss_pred CCcEEEEEecCCcEEEEeeccCCCcc-cEEEEEecC----CCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCC
Q 016185 175 DESVRLWNVQTGICILIFAGAGGHRN-EVLSVDFHP----SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 249 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~~~~~~~~-~i~~~~~~~----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 249 (394)
...|+-.|++.|+.+..+. .+.. +|..++-.. .+...-+.|-.+..+..||.|-....+
T Consensus 503 ~~~ly~mDLe~GKVV~eW~---~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~------------- 566 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWK---VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL------------- 566 (794)
T ss_pred CCceEEEecCCCcEEEEee---cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce-------------
Confidence 6789999999999999998 3443 366554321 123445667778899999999721100
Q ss_pred CccccccceeeeecCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCc
Q 016185 250 PTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 328 (394)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 328 (394)
..... ..........|++-. ..+||+|+.+|.||+||--. .. .-..+++-..+|..|..+.||
T Consensus 567 ----v~~~~-k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g-~~--------AKT~lp~lG~pI~~iDvt~DG-- 630 (794)
T PF08553_consen 567 ----VDSQS-KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLG-KR--------AKTALPGLGDPIIGIDVTADG-- 630 (794)
T ss_pred ----eeccc-cccccCCCceEEEecCCceEEEEeCCCcEEeecccc-hh--------hhhcCCCCCCCeeEEEecCCC--
Confidence 00000 111234456777776 66999999999999999432 21 334566667899999999999
Q ss_pred ceEEEEeCCCcEEEEEe
Q 016185 329 NAAAIGNREGKIFVWEL 345 (394)
Q Consensus 329 ~~l~~~~~dg~i~iwd~ 345 (394)
+++++.+ +..|.+++.
T Consensus 631 kwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 631 KWILATC-KTYLLLIDT 646 (794)
T ss_pred cEEEEee-cceEEEEEE
Confidence 4555544 567777775
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.98 E-value=0.011 Score=52.60 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=80.8
Q ss_pred cEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEE-------ecCCce
Q 016185 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-------GHGDSI 131 (394)
Q Consensus 59 ~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v 131 (394)
.|.||+ ..|+.+..+.- ..+.+-.+.|. .+. .|+.-..||.++++|+. |+....+. -....+
T Consensus 62 ~I~iys-~sG~ll~~i~w-----~~~~iv~~~wt--~~e--~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i 130 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPW-----DSGRIVGMGWT--DDE--ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRI 130 (410)
T ss_pred EEEEEC-CCCCEeEEEEE-----CCCCEEEEEEC--CCC--eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccc
Confidence 388888 56667766652 22688888886 544 57788899999999985 33311111 111112
Q ss_pred eEEEEcCCCCcEEEEceeeeE-Eeecc------------ceeeeeee---ccceeeeccCCcEEEEEecCCcEEEEeecc
Q 016185 132 NEIRTQPLKPSLVVSASKVII-ISSLS------------LICLLLFI---RSNCLRVGQDESVRLWNVQTGICILIFAGA 195 (394)
Q Consensus 132 ~~~~~~~~~~~~l~s~~~~i~-~~~~~------------~~~~~~~~---~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~ 195 (394)
....+.. +|-.+.+.+..+. +.+.. ........ ......-..++.+.+.-. .+..+..+...
T Consensus 131 ~~~~~~~-~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~-~g~~i~~i~~~ 208 (410)
T PF04841_consen 131 FAIWFYK-NGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA-NGETIYIIDEN 208 (410)
T ss_pred cccccCC-CCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe-cCCEEEEEEcc
Confidence 2222222 3444444443221 11110 00000000 001111222333333222 23333322210
Q ss_pred C----CCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 196 G----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 196 ~----~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
. ...+++..++++| ++++++.-..+|.+.+.+..-
T Consensus 209 ~~~~i~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 209 SFKQIDSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred ccccccCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcc
Confidence 0 1236899999999 999999999999998887554
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.011 Score=52.46 Aligned_cols=204 Identities=15% Similarity=0.101 Sum_probs=101.8
Q ss_pred eEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE
Q 016185 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC 188 (394)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 188 (394)
.|.||+. .|+.+.++.-..+.|.++.|+. +..+++.. . ||.+++||+. |+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~e~LvvV~-~-------------------------dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-DEELVVVQ-S-------------------------DGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC-CCeEEEEE-c-------------------------CCEEEEEeCC-Cce
Confidence 5999984 6777887775558899999987 54555444 4 9999999986 443
Q ss_pred EEEeec----cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecC
Q 016185 189 ILIFAG----AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 264 (394)
Q Consensus 189 ~~~~~~----~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (394)
...+.. ..-....+....+.. +|-.+++. ++.+.+. .+........ .....+.. ......+
T Consensus 113 ~fsl~~~i~~~~v~e~~i~~~~~~~-~GivvLt~--~~~~~~v--~n~~~~~~~~-~~~~~p~~---------~~~~~~~ 177 (410)
T PF04841_consen 113 QFSLGEEIEEEKVLECRIFAIWFYK-NGIVVLTG--NNRFYVV--NNIDEPVKLR-RLPEIPGL---------WTKFHWW 177 (410)
T ss_pred eechhhhccccCcccccccccccCC-CCEEEECC--CCeEEEE--eCccccchhh-ccccCCCc---------ccccccc
Confidence 111110 001112222223333 45444443 3444333 3311110000 00000000 0000111
Q ss_pred CCc--eEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEE
Q 016185 265 SNY--VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 342 (394)
Q Consensus 265 ~~~--i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 342 (394)
... +..+.-+....+....++.+.+.+....+ ... ..+++..|++||++ .++|.-..+|.+.+
T Consensus 178 ~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~------------~i~-~~~~i~~iavSpng--~~iAl~t~~g~l~v 242 (410)
T PF04841_consen 178 PSWTVIPLLSSDRVVEILLANGETIYIIDENSFK------------QID-SDGPIIKIAVSPNG--KFIALFTDSGNLWV 242 (410)
T ss_pred cccccceEeecCcceEEEEecCCEEEEEEccccc------------ccc-CCCCeEEEEECCCC--CEEEEEECCCCEEE
Confidence 111 11111123444454556666655433211 111 23579999999999 58888889999988
Q ss_pred EEecCCCceeeEEeccCCccCCeeEEEeccCC
Q 016185 343 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 374 (394)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 374 (394)
....-.+ ....+.. +....+..+.|.-+.
T Consensus 243 ~ssDf~~--~~~e~~~-~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 243 VSSDFSE--KLCEFDT-DSKSPPKQMAWCGND 271 (410)
T ss_pred EECcccc--eeEEeec-CcCCCCcEEEEECCC
Confidence 8765443 3333331 123455677776543
No 350
>PHA02713 hypothetical protein; Provisional
Probab=97.95 E-value=0.0015 Score=60.60 Aligned_cols=178 Identities=13% Similarity=0.102 Sum_probs=91.9
Q ss_pred CcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC-----cEEEEEccccceeeccccccCCCCCCCC
Q 016185 176 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFP 250 (394)
Q Consensus 176 ~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 250 (394)
..+..||..++.... +..+....... +++.. ++.+.+.|+.++ .+..||..+.. |...+
T Consensus 320 ~~v~~Yd~~~n~W~~-~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~--------W~~~~---- 383 (557)
T PHA02713 320 NKVYKINIENKIHVE-LPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK--------WKMLP---- 383 (557)
T ss_pred ceEEEEECCCCeEee-CCCCcchhhce-eEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe--------EEECC----
Confidence 357788887765422 11110111111 23333 678888888764 37778877632 11111
Q ss_pred ccccccceeeeecCCCceEEEEEeCcEEEEeecC-----------------------CeEEEecCCCCCCCCCCCcceec
Q 016185 251 TKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD-----------------------NEIVLWEPKMKEQSPGEGTADIL 307 (394)
Q Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----------------------g~i~~~d~~~~~~~~~~~~~~~~ 307 (394)
.+.........+...+.+.+.|+.+ ..+..||..+.+-. .+
T Consensus 384 ---------~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~-------~v 447 (557)
T PHA02713 384 ---------DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE-------TL 447 (557)
T ss_pred ---------CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe-------ec
Confidence 1111111122333446666777654 24777887766421 11
Q ss_pred ccccCCCCCeEEEEEeecCCcceEEEEeCC------CcEEEEEecC-CCceeeEEeccCCccCCeeEEEeccCCCEEEEe
Q 016185 308 QKYPVPECDIWFIKFSCDFHYNAAAIGNRE------GKIFVWELQS-SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 380 (394)
Q Consensus 308 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 380 (394)
..+.... .......-++ .+.+.|+.+ ..+..||..+ ++...+..++ ........+.+ +++..++|
T Consensus 448 ~~m~~~r--~~~~~~~~~~--~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~--~~r~~~~~~~~--~~~iyv~G 519 (557)
T PHA02713 448 PNFWTGT--IRPGVVSHKD--DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE--SRLSALHTILH--DNTIMMLH 519 (557)
T ss_pred CCCCccc--ccCcEEEECC--EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC--cccccceeEEE--CCEEEEEe
Confidence 2221111 1112233445 466667654 2467899987 6655555555 22233333333 67888999
Q ss_pred ccCC--eEEEEEcCC
Q 016185 381 CEDG--AIWRWDAIP 393 (394)
Q Consensus 381 ~~dg--~i~iwd~~~ 393 (394)
|.|| .+..||..+
T Consensus 520 g~~~~~~~e~yd~~~ 534 (557)
T PHA02713 520 CYESYMLQDTFNVYT 534 (557)
T ss_pred eecceeehhhcCccc
Confidence 9888 677777764
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.93 E-value=0.0012 Score=45.44 Aligned_cols=99 Identities=10% Similarity=0.097 Sum_probs=64.8
Q ss_pred eeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 016185 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (394)
Q Consensus 36 v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd 114 (394)
|+++++...++...+-|+.|++|. |++|+ ..+.+.++. ..+.|..++-. ..+ .++.+..+|+|-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~------e~~~v~~L~~~--~~~--~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT------ETDKVTSLCSL--GGG--RFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe------cccceEEEEEc--CCC--EEEEEecCCEEEEEe
Confidence 788898875543446788888888 99999 335555655 34455555543 343 799999999999998
Q ss_pred CCCCeeEEEEEecCCceeEEEEcCC---CCcEEEEcee
Q 016185 115 VSNEKLHKSFVGHGDSINEIRTQPL---KPSLVVSASK 149 (394)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~ 149 (394)
- ...+..++.. ..+.++.+... +-..|++|-.
T Consensus 70 ~--~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~Gws 104 (111)
T PF14783_consen 70 R--SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWS 104 (111)
T ss_pred C--cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEec
Confidence 4 3445555533 33666665432 2346777766
No 352
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=3.4e-05 Score=59.63 Aligned_cols=105 Identities=10% Similarity=0.154 Sum_probs=68.0
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEE-EEeecCCcceEEEEeCCCcEEEEEecCCCceee
Q 016185 275 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI-KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 353 (394)
Q Consensus 275 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (394)
+..++.|+.+|.|.+|....... ...........|.++ .--.++ .+..++..||.||.|++...+ .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~--------~~d~~~s~~e~i~~~Ip~~~~~--~~~c~~~~dg~ir~~n~~p~k--~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA--------HSDRVCSGEESIDLGIPNGRDS--SLGCVGAQDGRIRACNIKPNK--VL 137 (238)
T ss_pred CceEEeecccceEEEecCCccch--------HHHhhhcccccceecccccccc--ceeEEeccCCceeeeccccCc--ee
Confidence 77899999999999998773211 222222222233222 222222 588999999999999998874 33
Q ss_pred EEeccCCcc-CCeeEEEeccCCCEEEEe--ccCCeEEEEEcCC
Q 016185 354 ARLSHAQSK-SPIRQTAMSYDGSTILSC--CEDGAIWRWDAIP 393 (394)
Q Consensus 354 ~~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~dg~i~iwd~~~ 393 (394)
.... .|. .++..+..+..+++|+++ |.|..++.|++..
T Consensus 138 g~~g--~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 138 GYVG--QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeec--cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3333 444 556666666667777777 7888888888753
No 353
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.82 E-value=0.0085 Score=55.59 Aligned_cols=227 Identities=14% Similarity=0.154 Sum_probs=122.6
Q ss_pred CCcEEEEeecCC------eEEEEECCCCeeEE--EEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccc
Q 016185 97 GIPFLVAGGING------IIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSN 168 (394)
Q Consensus 97 ~~~~l~s~~~dg------~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~ 168 (394)
+. +++.|+.++ .+..+|..+++... .+. ....-.+++.. ++.+.++|+.
T Consensus 285 ~~-l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~------------------- 341 (571)
T KOG4441|consen 285 GK-LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGY------------------- 341 (571)
T ss_pred Ce-EEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccc-------------------
Confidence 44 777777763 57788877663322 222 22223344444 3467777777
Q ss_pred eeeeccC------CcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCc-----EEEEEccccceeec
Q 016185 169 CLRVGQD------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT-----VKIWSMKEFWTYVE 237 (394)
Q Consensus 169 ~~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~~ 237 (394)
| .++..||.+.++-...-. +....... +++.. ++.+.++|+.||. +-.||..+.+-
T Consensus 342 ------~~~~~~l~~ve~YD~~~~~W~~~a~-M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W--- 408 (571)
T KOG4441|consen 342 ------DSGSDRLSSVERYDPRTNQWTPVAP-MNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW--- 408 (571)
T ss_pred ------cCCCcccceEEEecCCCCceeccCC-ccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcc---
Confidence 6 467788888777444221 11111111 22222 7889999999864 56666666321
Q ss_pred cccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCC------eEEEecCCCCCCCCCCCcceeccccc
Q 016185 238 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN------EIVLWEPKMKEQSPGEGTADILQKYP 311 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~ 311 (394)
. .+..+...........+.|.+.++|+.++ ++..||..+..-. .+....
T Consensus 409 -----~-------------~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-------~~~~M~ 463 (571)
T KOG4441|consen 409 -----T-------------PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT-------LIAPMN 463 (571)
T ss_pred -----c-------------ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee-------ecCCcc
Confidence 1 11112112222333444578888888554 4778888877521 111222
Q ss_pred CCCCCeEEEEEeecCCcceEEEEeCCCc-----EEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCe-
Q 016185 312 VPECDIWFIKFSCDFHYNAAAIGNREGK-----IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA- 385 (394)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~- 385 (394)
...... . .-.-++ .+.+.|+.|+. |..||..+.+...+..+. .....+-...+ ++...++|+.||.
T Consensus 464 ~~R~~~-g-~a~~~~--~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~--~~rs~~g~~~~--~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 464 TRRSGF-G-VAVLNG--KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT--SPRSAVGVVVL--GGKLYAVGGFDGNN 535 (571)
T ss_pred cccccc-e-EEEECC--EEEEECCccCCCccceEEEEcCCCCceeEcccCc--cccccccEEEE--CCEEEEEecccCcc
Confidence 111111 1 223344 57888887763 788999888766665454 22233322233 5677788888764
Q ss_pred ----EEEEEcC
Q 016185 386 ----IWRWDAI 392 (394)
Q Consensus 386 ----i~iwd~~ 392 (394)
|..||..
T Consensus 536 ~l~~ve~ydp~ 546 (571)
T KOG4441|consen 536 NLNTVECYDPE 546 (571)
T ss_pred ccceeEEcCCC
Confidence 5566544
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00016 Score=64.08 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=78.7
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCcee-EEEEcCCCCcEEEEceeeeEEeeccceeee
Q 016185 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN-EIRTQPLKPSLVVSASKVIIISSLSLICLL 162 (394)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~ 162 (394)
..+.-+.|+ |.-. ++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.| ++++|+.|-.
T Consensus 21 ~~i~~~ewn--P~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~k------------- 82 (665)
T KOG4640|consen 21 INIKRIEWN--PKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFK------------- 82 (665)
T ss_pred cceEEEEEc--Cccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEec-------------
Confidence 356668888 7777 99999999999999987 778888887777777 999999 7999999999
Q ss_pred eeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecC
Q 016185 163 LFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 209 (394)
Q Consensus 163 ~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 209 (394)
||+|++.|++++..+..+. .....+|.++.|.+
T Consensus 83 ------------dG~I~L~Dve~~~~l~~~~--~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 83 ------------DGTIRLHDVEKGGRLVSFL--FSVETDISKGIWDR 115 (665)
T ss_pred ------------CCeEEEEEccCCCceeccc--cccccchheeeccc
Confidence 9999999999998887732 13567888888875
No 355
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.016 Score=46.89 Aligned_cols=259 Identities=18% Similarity=0.150 Sum_probs=140.0
Q ss_pred eeEEEEEeeCCCcceEEEEecCCc--EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec-----CC
Q 016185 36 LYAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-----NG 108 (394)
Q Consensus 36 v~~i~~sp~~~~~~~~las~~~d~--i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~-----dg 108 (394)
-..|+|+|. ...-++.+-.-+ ..++|....+.+..+...... -.+.- =.|+|||. +|.+.-. .|
T Consensus 70 ~Hgi~~~p~---~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R----HfyGH-Gvfs~dG~-~LYATEndfd~~rG 140 (366)
T COG3490 70 GHGIAFHPA---LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR----HFYGH-GVFSPDGR-LLYATENDFDPNRG 140 (366)
T ss_pred cCCeecCCC---CcceEEEEecCCceEEEECCCCCcCcEEEecccCc----eeecc-cccCCCCc-EEEeecCCCCCCCc
Confidence 345778883 344555555433 889998888776666543221 11111 12559999 7766533 37
Q ss_pred eEEEEECCCC-eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCc
Q 016185 109 IIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI 187 (394)
Q Consensus 109 ~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~ 187 (394)
.|-|||...+ +.+.++..|.-.-..+.|.+ ++..++.+..-|..+. .+....+-..++.-++.+.|..+|+
T Consensus 141 ViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethp-------dfgR~~lNldsMePSlvlld~atG~ 212 (366)
T COG3490 141 VIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHP-------DFGRTELNLDSMEPSLVLLDAATGN 212 (366)
T ss_pred eEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeCCceeccc-------ccCccccchhhcCccEEEEeccccc
Confidence 8999998754 55677788877778899999 6666665543222220 1111233334446677777777777
Q ss_pred EEEEeecc-CCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee-------
Q 016185 188 CILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF------- 259 (394)
Q Consensus 188 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 259 (394)
.+.....+ ..+.-.|..++..+ ++...+.+-..|.- .. .+..........++.
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~-----~d-------------~ppLvg~~~~g~~l~~~~~pee 273 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPR-----ND-------------LPPLVGHFRKGEPLEFLDLPEE 273 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCC-----cc-------------CCcceeeccCCCcCcccCCCHH
Confidence 66543321 12345677777777 66655444333210 00 000000000011111
Q ss_pred eeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC
Q 016185 260 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 336 (394)
Q Consensus 260 ~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 336 (394)
....-.+.|-+|+.+ +-..+++-..+...+||..++.. +..-... ....++-...+ +++.+.
T Consensus 274 ~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v---------v~~a~l~--daaGva~~~~g----f~vssg 338 (366)
T COG3490 274 QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV---------VSEAALP--DAAGVAAAKGG----FAVSSG 338 (366)
T ss_pred HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE---------Eeccccc--ccccceeccCc----eEEecC
Confidence 112233456667765 33444555566788999999862 2222211 12223333333 677777
Q ss_pred CCcEEEEEe
Q 016185 337 EGKIFVWEL 345 (394)
Q Consensus 337 dg~i~iwd~ 345 (394)
+|.+.++.-
T Consensus 339 ~G~~~~~s~ 347 (366)
T COG3490 339 QGRIIFYSR 347 (366)
T ss_pred CceEEeccc
Confidence 898988843
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.73 E-value=0.00013 Score=39.89 Aligned_cols=37 Identities=35% Similarity=0.623 Sum_probs=31.7
Q ss_pred eeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 352 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
....+. .|...|.++.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLK--GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEE--ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344455 6778999999999999999999999999996
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.73 E-value=0.011 Score=52.65 Aligned_cols=221 Identities=11% Similarity=0.072 Sum_probs=107.9
Q ss_pred EEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeecccee
Q 016185 91 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCL 170 (394)
Q Consensus 91 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~ 170 (394)
++++|+|+ +++. +.||...|+.....+... . +.-....|.+ . +.+|+-..
T Consensus 38 ls~npngr-~v~V-~g~geY~iyt~~~~r~k~--~---G~g~~~vw~~-~-n~yAv~~~--------------------- 87 (443)
T PF04053_consen 38 LSHNPNGR-FVLV-CGDGEYEIYTALAWRNKA--F---GSGLSFVWSS-R-NRYAVLES--------------------- 87 (443)
T ss_dssp EEE-TTSS-EEEE-EETTEEEEEETTTTEEEE--E---EE-SEEEE-T-S-SEEEEE-T---------------------
T ss_pred EEECCCCC-EEEE-EcCCEEEEEEccCCcccc--c---CceeEEEEec-C-ccEEEEEC---------------------
Confidence 34449999 6666 667888888854443322 2 2345688887 4 34666665
Q ss_pred eeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCC
Q 016185 171 RVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 250 (394)
Q Consensus 171 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 250 (394)
.+.|.++.--+.+....+. ....+..|- .|.+|...+. +.|.+||+.+.
T Consensus 88 ----~~~I~I~kn~~~~~~k~i~----~~~~~~~If----~G~LL~~~~~-~~i~~yDw~~~------------------ 136 (443)
T PF04053_consen 88 ----SSTIKIYKNFKNEVVKSIK----LPFSVEKIF----GGNLLGVKSS-DFICFYDWETG------------------ 136 (443)
T ss_dssp ----TS-EEEEETTEE-TT---------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT-------------------
T ss_pred ----CCeEEEEEcCccccceEEc----CCcccceEE----cCcEEEEECC-CCEEEEEhhHc------------------
Confidence 7889996322222222333 122333343 2566666654 48999999993
Q ss_pred ccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCC--CCCCCCCcceecccccCCCCCeEEEEEeecC
Q 016185 251 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK--EQSPGEGTADILQKYPVPECDIWFIKFSCDF 326 (394)
Q Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 326 (394)
..+..+... .|..+.|+ +++++..+.+ .+.+++.... ......+....+....--...|.+.+|..+-
T Consensus 137 -----~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~ 208 (443)
T PF04053_consen 137 -----KLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDC 208 (443)
T ss_dssp ------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTE
T ss_pred -----ceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCE
Confidence 345555533 38899998 6677776644 6666655433 0000011111111111113356667776552
Q ss_pred CcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 327 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
++.+... .|+. +..++...+..+. .++.-+...|+.+.+.....|+.|..+.+.
T Consensus 209 ---fiYtT~~--~lkY--l~~Ge~~~i~~ld-----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 209 ---FIYTTSN--HLKY--LVNGETGIIAHLD-----KPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ---EEEE-TT--EEEE--EETTEEEEEEE-S-----S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred ---EEEEcCC--eEEE--EEcCCcceEEEcC-----CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 3444332 6665 5556434444444 467777888877889989999999888764
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.66 E-value=0.023 Score=49.68 Aligned_cols=223 Identities=13% Similarity=0.107 Sum_probs=113.2
Q ss_pred cCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC
Q 016185 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT 185 (394)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~ 185 (394)
..+.+.++|+.+++....... ...+....|+| +++.++-.. ++.|.+++..+
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~--------------------------~~nly~~~~~~ 72 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR--------------------------DNNLYLRDLAT 72 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE--------------------------TTEEEEESSTT
T ss_pred cceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe--------------------------cCceEEEECCC
Confidence 346799999998765443333 56788999999 677777766 67888888776
Q ss_pred CcEEEEeeccC-----CC---------cccEEEEEecCCCCeeEEeecc-CCcEEEEEccccceeeccccccCCCCCCCC
Q 016185 186 GICILIFAGAG-----GH---------RNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 250 (394)
Q Consensus 186 ~~~~~~~~~~~-----~~---------~~~i~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 250 (394)
++..+.-.... |- -+.-..+-|+| |++.|+.... +..|+.+.+........
T Consensus 73 ~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~------------- 138 (353)
T PF00930_consen 73 GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS------------- 138 (353)
T ss_dssp SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE-------------
T ss_pred CCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc-------------
Confidence 64433222100 00 11225688999 7777766544 45566666554110000
Q ss_pred ccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCc
Q 016185 251 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 328 (394)
Q Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 328 (394)
..| .+..+.+- |.-.. .-.+.++|+.+++.. .............-+..+.|.+++..
T Consensus 139 ----~yp---------~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~----~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 139 ----QYP---------EVESIRYPKAGDPNP----RVSLFVVDLASGKTT----ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp ----SS----------EEEEEE--BTTS-------EEEEEEEESSSTCCC----EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred ----cCC---------cccccccCCCCCcCC----ceEEEEEECCCCcEE----EeeeccccCCCccCcccceecCCCcE
Confidence 000 11111111 22111 124667888776531 00111112233456889999999841
Q ss_pred ceEEEEeCC---CcEEEEEecCCCceeeEEeccCCccCCeeEEEec-cCCC-EEEEeccCCeEEEEEc
Q 016185 329 NAAAIGNRE---GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGS-TILSCCEDGAIWRWDA 391 (394)
Q Consensus 329 ~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~-~l~s~~~dg~i~iwd~ 391 (394)
.++...+.+ ..+.++|..++....+..-...+.-..-....|. +++. +|.....||.-+||-+
T Consensus 198 l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred EEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 122223333 2466778877765555444333333333456665 5554 4445557776555443
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.0022 Score=60.50 Aligned_cols=146 Identities=17% Similarity=0.127 Sum_probs=94.7
Q ss_pred CCeeEEe-eccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCc-eEEEEEe-------CcEEEEe
Q 016185 211 DIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY-VDCNRWL-------GDFILSK 281 (394)
Q Consensus 211 ~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~-------~~~l~~~ 281 (394)
+.++|+. ......|+-.|+..++ .+..+..|... |..++.+ +...+.|
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GK-----------------------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflG 548 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGK-----------------------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLG 548 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCc-----------------------EEEEeecCCCcceeEecccccccccCCCceEEE
Confidence 3444443 3456778888888844 45566665544 5555543 3456677
Q ss_pred ecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCc
Q 016185 282 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS 361 (394)
Q Consensus 282 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (394)
-.+..+..||.+-..... .......+ .......|++-+.+| +||+|+.+|.||+||-... .....++ +-
T Consensus 549 ls~n~lfriDpR~~~~k~---v~~~~k~Y-~~~~~Fs~~aTt~~G---~iavgs~~G~IRLyd~~g~--~AKT~lp--~l 617 (794)
T PF08553_consen 549 LSDNSLFRIDPRLSGNKL---VDSQSKQY-SSKNNFSCFATTEDG---YIAVGSNKGDIRLYDRLGK--RAKTALP--GL 617 (794)
T ss_pred ECCCceEEeccCCCCCce---eecccccc-ccCCCceEEEecCCc---eEEEEeCCCcEEeecccch--hhhhcCC--CC
Confidence 888999999998643100 00001111 234456778877777 8999999999999995332 2333444 66
Q ss_pred cCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 362 KSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 362 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
..+|.+|..+.||++|+..+. ..|.+++.
T Consensus 618 G~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 618 GDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 689999999999999887764 45666654
No 360
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00036 Score=61.97 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=74.7
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceE-EEEEEEcCCCCcEEEEeecCCeE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY-TVSWACNVDGIPFLVAGGINGII 110 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~s~~~dg~i 110 (394)
...|.-+.|+| .-.++|.+..++ +.+..+. .+.+-++. -+..++. +++|. |||+ +|+.|-.||+|
T Consensus 20 ~~~i~~~ewnP----~~dLiA~~t~~gelli~R~n-~qRlwtip-----~p~~~v~~sL~W~--~DGk-llaVg~kdG~I 86 (665)
T KOG4640|consen 20 PINIKRIEWNP----KMDLIATRTEKGELLIHRLN-WQRLWTIP-----IPGENVTASLCWR--PDGK-LLAVGFKDGTI 86 (665)
T ss_pred ccceEEEEEcC----ccchhheeccCCcEEEEEec-cceeEecc-----CCCCccceeeeec--CCCC-EEEEEecCCeE
Confidence 45688899999 678999999988 9998877 55556665 3555666 89999 9999 99999999999
Q ss_pred EEEECCCCeeEEEEE-ecCCceeEEEEcC
Q 016185 111 RVIDVSNEKLHKSFV-GHGDSINEIRTQP 138 (394)
Q Consensus 111 ~vwd~~~~~~~~~~~-~~~~~v~~~~~~~ 138 (394)
++-|++++..+..+. .-...|.++-|.+
T Consensus 87 ~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 87 RLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEEccCCCceeccccccccchheeeccc
Confidence 999999987776632 2456788888875
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.59 E-value=0.00023 Score=38.76 Aligned_cols=38 Identities=37% Similarity=0.567 Sum_probs=32.2
Q ss_pred cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEE
Q 016185 187 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 228 (394)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd 228 (394)
+....+. .|...|.++.|.+ ++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLK---GHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEE---ecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 4455555 6888999999999 778999999999999996
No 362
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.59 E-value=0.034 Score=46.88 Aligned_cols=269 Identities=13% Similarity=0.076 Sum_probs=142.7
Q ss_pred cEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee----------cCCeEEEEECCCCeeEEEEEecC
Q 016185 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGHG 128 (394)
Q Consensus 59 ~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~ 128 (394)
++.|+|..+++.+..+..-.. ..+..+ |+++ .++++. ..-.|.+||.++.++...+.-..
T Consensus 18 rv~viD~d~~k~lGmi~~g~~-------~~~~~s--pdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFL-------GNVALS--PDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESS-------EEEEE---TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred eEEEEECCCCcEEEEeecccC-------CceeEC--CCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence 599999999988877763221 124445 9998 666542 34579999999998887665332
Q ss_pred C-c------eeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCccc
Q 016185 129 D-S------INEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNE 201 (394)
Q Consensus 129 ~-~------v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 201 (394)
. . ...++++. ++++++.... +...+|.|-|+..++.+.++.. .+
T Consensus 88 k~R~~~~~~~~~~~ls~-dgk~~~V~N~-----------------------TPa~SVtVVDl~~~kvv~ei~~----PG- 138 (342)
T PF06433_consen 88 KPRAQVVPYKNMFALSA-DGKFLYVQNF-----------------------TPATSVTVVDLAAKKVVGEIDT----PG- 138 (342)
T ss_dssp S-B--BS--GGGEEE-T-TSSEEEEEEE-----------------------SSSEEEEEEETTTTEEEEEEEG----TS-
T ss_pred cchheecccccceEEcc-CCcEEEEEcc-----------------------CCCCeEEEEECCCCceeeeecC----CC-
Confidence 2 1 22345565 4444443322 1256788889888888887762 22
Q ss_pred EEEEEecCCCCeeEEeeccCCcEEEEEccc-cceeeccccccCCCCCCCCccccccceeeeecCCCceE-EEEEe--CcE
Q 016185 202 VLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWL--GDF 277 (394)
Q Consensus 202 i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~~ 277 (394)
+..+ -|..+.-|.+-+.||++.-..+.. ++.. ... ...+....+++. .-.+. +..
T Consensus 139 C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~------------------t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 139 CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKS------------------TKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEE-EEE------------------EEESSTTTS-B-S--EEETTTTE
T ss_pred EEEE--EecCCCceEEEecCCceEEEEECCCCCEe-Eee------------------ccccCCCCcccccccceECCCCe
Confidence 2222 221234577888899999999985 3321 110 001111111111 11111 334
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCcceecc----cccCCCCCeEEEEEeecCCcceEEEEe--------CCCcEEEEEe
Q 016185 278 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQ----KYPVPECDIWFIKFSCDFHYNAAAIGN--------REGKIFVWEL 345 (394)
Q Consensus 278 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~l~~~~--------~dg~i~iwd~ 345 (394)
++-.+.+|.|+--|+......... ....+. .-....+.-.-+++++..+ .|.+-- .|+.=.||-+
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~--rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGK-PWSLLTDAEKADGWRPGGWQLIAYHAASG--RLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEE-EEESS-HHHHHTTEEE-SSS-EEEETTTT--EEEEEEEE--TT-TTS-EEEEEEE
T ss_pred EEEEecCCEEEEEeccCCcccccC-cccccCccccccCcCCcceeeeeeccccC--eEEEEecCCCCCCccCCceEEEEE
Confidence 444567777777776655311000 000000 0000112233456666553 222211 2334445544
Q ss_pred cCCCceeeEEeccCCccCCeeEEEeccCCC-EEEEe-ccCCeEEEEEcCC
Q 016185 346 QSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSC-CEDGAIWRWDAIP 393 (394)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~i~iwd~~~ 393 (394)
.....+.+.+++.. .++.+|+.+.+.+ +|++. ..++.|.+||..+
T Consensus 275 D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 275 DLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp ETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred ECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 44333567766632 4688999998765 66544 5689999999865
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.54 E-value=0.002 Score=56.50 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=83.6
Q ss_pred cEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEE
Q 016185 201 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS 280 (394)
Q Consensus 201 ~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 280 (394)
.|+.+.|.+ +..-|++|...|.|.+|.+...+...... .+. ........+ .|
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~-----~~~-----~~~~~~~~~-~~---------------- 54 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNRE-----QPP-----DLDYNFRRF-SL---------------- 54 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE----------------------------S---G----------------
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccC-----CCc-----ccCcccccc-cc----------------
Confidence 578899998 66668999999999999998843211000 000 000000000 01
Q ss_pred eecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEecc--
Q 016185 281 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH-- 358 (394)
Q Consensus 281 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 358 (394)
.++.-.+-|+.............+..-+....++|++++.|.-| ++|.|.++|.+.|.|++.........+..
T Consensus 55 --~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~ 129 (395)
T PF08596_consen 55 --NNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESF 129 (395)
T ss_dssp --GGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--
T ss_pred --cCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccc
Confidence 11112223333322111111222334444557789999999777 89999999999999997663222222221
Q ss_pred --CCccCCeeEEEecc-----CC---CEEEEeccCCeEEEEEcC
Q 016185 359 --AQSKSPIRQTAMSY-----DG---STILSCCEDGAIWRWDAI 392 (394)
Q Consensus 359 --~~~~~~v~~~~~s~-----~~---~~l~s~~~dg~i~iwd~~ 392 (394)
......|+++.|+- |+ -.|++|...|.+.+|.+.
T Consensus 130 ~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 130 LSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred cccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 12345788888872 33 478889999999999875
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.52 E-value=0.049 Score=46.89 Aligned_cols=168 Identities=13% Similarity=0.060 Sum_probs=85.4
Q ss_pred cceEEEEecC-Cc---EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEE
Q 016185 48 YFNVFATVGG-NR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS 123 (394)
Q Consensus 48 ~~~~las~~~-d~---i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 123 (394)
+|+.|+.+++ ++ +.+.|+.+++..+.... .........++ ++++ .++-...+..|+-.|+++.+....
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg-----~g~~~~g~~~s--~~~~-~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDG-----PGDNTFGGFLS--PDDR-ALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---S-----S-B-TTT-EE---TTSS-EEEEEETTTEEEEEETTT--EEEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccC-----CCCCccceEEe--cCCC-eEEEEECCCeEEEEECCcCcEEEE
Confidence 5655444443 43 88899988876554442 11222234445 7777 555454556888899999887666
Q ss_pred EEecCCceeEEEEcC-CCCcEEEEceeeeEEeeccceee-eeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCccc
Q 016185 124 FVGHGDSINEIRTQP-LKPSLVVSASKVIIISSLSLICL-LLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNE 201 (394)
Q Consensus 124 ~~~~~~~v~~~~~~~-~~~~~l~s~~~~i~~~~~~~~~~-~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 201 (394)
+......+-...|.. .+...++ +... -....... -+..-..+..+.....|.--|+.+|+....+. ....
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~-g~e~---~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~----~~~w 189 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLV-GIEI---SREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE----DTDW 189 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEE-EEEE---EGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE----ESS-
T ss_pred EECCcccccccceeeCCCccEEE-EEEE---eehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe----cCcc
Confidence 666667666677753 2444433 3220 00000000 00011234455557778888999988776665 5677
Q ss_pred EEEEEecCCCCeeEEeecc---CCc-EEEEEccc
Q 016185 202 VLSVDFHPSDIYRIASCGM---DNT-VKIWSMKE 231 (394)
Q Consensus 202 i~~~~~~~~~~~~l~s~~~---dg~-v~iwd~~~ 231 (394)
+.-+.|+|.+..+|+-|-. +.. -|||-+++
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 8889999977777766543 221 36676665
No 365
>PHA02713 hypothetical protein; Provisional
Probab=97.48 E-value=0.023 Score=52.91 Aligned_cols=69 Identities=7% Similarity=-0.022 Sum_probs=39.5
Q ss_pred EEEeCcEEEEeecC------CeEEEecCCC-CCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCC--cEE
Q 016185 271 NRWLGDFILSKSVD------NEIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG--KIF 341 (394)
Q Consensus 271 ~~~~~~~l~~~~~d------g~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--~i~ 341 (394)
+...+++.+.|+.+ ..+..||.++ .+-. .+..++.+......+. -++ .+.++|+.++ .+.
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-------~~~~m~~~r~~~~~~~--~~~--~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-------LITTTESRLSALHTIL--HDN--TIMMLHCYESYMLQD 528 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCee-------EccccCcccccceeEE--ECC--EEEEEeeecceeehh
Confidence 34446766777654 2467899887 4321 2223332222222222 245 5888898888 788
Q ss_pred EEEecCCCc
Q 016185 342 VWELQSSPP 350 (394)
Q Consensus 342 iwd~~~~~~ 350 (394)
.||..+.+.
T Consensus 529 ~yd~~~~~W 537 (557)
T PHA02713 529 TFNVYTYEW 537 (557)
T ss_pred hcCcccccc
Confidence 888887754
No 366
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.35 E-value=0.012 Score=53.75 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=66.6
Q ss_pred CCeEEEEECCC-----CeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEE
Q 016185 107 NGIIRVIDVSN-----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLW 181 (394)
Q Consensus 107 dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vw 181 (394)
++.|.+.|..+ .+.+..+.. ......+.++|++..+++++.. +.+|.|.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVankl-------------------------S~tVSVI 348 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKL-------------------------SPTVTVI 348 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCC-------------------------CCcEEEE
Confidence 35688888776 344555553 3456789999955555666666 8999999
Q ss_pred EecCCcE------------EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 182 NVQTGIC------------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 182 d~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
|+.+.+. ..... -.......+|.+ +++.+.|-..|..|..||+..
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaeve----vGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPE----LGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EChhhhhhhhccCCccceEEEeec----cCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 9987552 23332 233445678898 888888889999999999987
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.30 E-value=0.12 Score=46.45 Aligned_cols=246 Identities=12% Similarity=0.120 Sum_probs=124.0
Q ss_pred ceeEEEEEeeCCCcceEEEEe----cCCc--EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec--
Q 016185 35 PLYAVVFNFIDSRYFNVFATV----GGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-- 106 (394)
Q Consensus 35 ~v~~i~~sp~~~~~~~~las~----~~d~--i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~-- 106 (394)
.+...++|| +|+++|-+ |.+. ++++|+.+|+.+...-. ......+.|. ++++.++.+...
T Consensus 125 ~~~~~~~Sp----dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~------~~~~~~~~W~--~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 125 SLGGFSVSP----DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE------NPKFSSVSWS--DDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEEETT----TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE------EEESEEEEEC--TTSSEEEEEECSTT
T ss_pred EeeeeeECC----CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc------ccccceEEEe--CCCCEEEEEEeCcc
Confidence 344567777 78887755 3333 99999999976543210 1111237887 888844555432
Q ss_pred --------CCeEEEEECCCCee--EEEEEecCCc--eeEEEEcCCCCcEEEE-ceeeeEEeeccceeeeeeeccceeeec
Q 016185 107 --------NGIIRVIDVSNEKL--HKSFVGHGDS--INEIRTQPLKPSLVVS-ASKVIIISSLSLICLLLFIRSNCLRVG 173 (394)
Q Consensus 107 --------dg~i~vwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~l~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~ 173 (394)
...|+.|++.+... ...+...... ...+..++ ++++++. ... +
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~-----------------------~ 248 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSS-----------------------G 248 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEES-----------------------S
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEc-----------------------c
Confidence 23478888876643 2344433333 56788888 5555443 332 1
Q ss_pred cC-CcEEEEEecCC----cEEEEeeccCCCcccEE-EEEecCCCCeeEEeec---cCCcEEEEEccccceeeccccccCC
Q 016185 174 QD-ESVRLWNVQTG----ICILIFAGAGGHRNEVL-SVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTD 244 (394)
Q Consensus 174 ~d-~~i~vwd~~~~----~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~ 244 (394)
.+ ..+.+.++..+ .....+. .....+. .+... ++.+++... .++.|...++.....
T Consensus 249 ~~~s~v~~~d~~~~~~~~~~~~~l~---~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~---------- 313 (414)
T PF02897_consen 249 TSESEVYLLDLDDGGSPDAKPKLLS---PREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP---------- 313 (414)
T ss_dssp SSEEEEEEEECCCTTTSS-SEEEEE---ESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG----------
T ss_pred ccCCeEEEEeccccCCCcCCcEEEe---CCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc----------
Confidence 13 45777888764 2233333 1333333 33333 444444432 346677777766321
Q ss_pred CCCCCCccccccceeeeecCCC--ceEEEEEeCcEEEEee-cCC--eEEEecCC-CCCCCCCCCcceecccccCC-CCCe
Q 016185 245 LPSKFPTKYVQFPVFIASVHSN--YVDCNRWLGDFILSKS-VDN--EIVLWEPK-MKEQSPGEGTADILQKYPVP-ECDI 317 (394)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~l~~~~-~dg--~i~~~d~~-~~~~~~~~~~~~~~~~~~~~-~~~i 317 (394)
......+..+.. .+..+...+++|+... .++ .|+++++. ... ....... .+.|
T Consensus 314 ----------~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~----------~~~~~~p~~g~v 373 (414)
T PF02897_consen 314 ----------AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE----------SREIPLPEAGSV 373 (414)
T ss_dssp ----------GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE----------EEEEESSSSSEE
T ss_pred ----------ccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE----------EeeecCCcceEE
Confidence 001113344444 4666766666555443 343 58889988 332 2222222 2334
Q ss_pred EEEEEeecCCcceEEE-Ee--CCCcEEEEEecCCCcee
Q 016185 318 WFIKFSCDFHYNAAAI-GN--REGKIFVWELQSSPPVL 352 (394)
Q Consensus 318 ~~~~~~~~~~~~~l~~-~~--~dg~i~iwd~~~~~~~~ 352 (394)
..+...++.+ .+.+. .+ .-++++.||+.+++...
T Consensus 374 ~~~~~~~~~~-~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 374 SGVSGDFDSD-ELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEES-TT-S-EEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred eccCCCCCCC-EEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 4554445543 23333 22 23578888888876433
No 368
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.29 E-value=0.15 Score=47.17 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=42.7
Q ss_pred ceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceE-------EEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeE
Q 016185 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFY-------TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH 121 (394)
Q Consensus 49 ~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~-------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 121 (394)
+.++++...+.|.-+|..+|+.+-....-... ...... .+++ .+. .++.++.|+.|.-.|.++++.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~-~~~~~~~~~~~~rg~av----~~~-~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPD-DVIPVMCCDVVNRGVAL----YDG-KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCc-ccccccccccccccceE----ECC-EEEEEcCCCEEEEEECCCCCEE
Confidence 44444444445888899999876555421110 000000 0111 123 5777888999999999999988
Q ss_pred EEEE
Q 016185 122 KSFV 125 (394)
Q Consensus 122 ~~~~ 125 (394)
....
T Consensus 144 W~~~ 147 (527)
T TIGR03075 144 WSKK 147 (527)
T ss_pred eecc
Confidence 7765
No 369
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.27 E-value=0.074 Score=49.55 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=118.6
Q ss_pred cceEEEEecCC------c-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC------CeEEEEE
Q 016185 48 YFNVFATVGGN------R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------GIIRVID 114 (394)
Q Consensus 48 ~~~~las~~~d------~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d------g~i~vwd 114 (394)
.+.+++.||.. . +..||..++....... .. ....-.+++. -+|. +.++|+.| ..+..||
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-m~---~~r~~~~~~~---~~~~-lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-MP---SPRCRVGVAV---LNGK-LYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCC-CC---cccccccEEE---ECCE-EEEEccccCCCcccceEEEec
Confidence 36677777765 2 7889988775332222 11 1222233333 3455 88888888 3466777
Q ss_pred CCCCeeEE--EEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC-----cEEEEEecCCc
Q 016185 115 VSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE-----SVRLWNVQTGI 187 (394)
Q Consensus 115 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~-----~i~vwd~~~~~ 187 (394)
...++-.. .+...........+ ++.+.+.|+. || ++..||..+.+
T Consensus 356 ~~~~~W~~~a~M~~~R~~~~v~~l---~g~iYavGG~-------------------------dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 356 PRTNQWTPVAPMNTKRSDFGVAVL---DGKLYAVGGF-------------------------DGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCCCceeccCCccCccccceeEEE---CCEEEEEecc-------------------------ccccccccEEEecCCCCc
Confidence 76655222 11111111111111 5677777776 64 47778877665
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC------cEEEEEccccceeeccccccCCCCCCCCccccccceeee
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 261 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (394)
....-. ......+......++.+.++|+.++ ++..||..+..- .. +..+
T Consensus 408 W~~va~----m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W--------~~-------------~~~M 462 (571)
T KOG4441|consen 408 WTPVAP----MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW--------TL-------------IAPM 462 (571)
T ss_pred ccccCC----CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce--------ee-------------cCCc
Confidence 433322 1112222222222788888888654 466777776331 11 1111
Q ss_pred ecCCCceEEEEEeCcEEEEeecCCe-----EEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC
Q 016185 262 SVHSNYVDCNRWLGDFILSKSVDNE-----IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 336 (394)
Q Consensus 262 ~~~~~~i~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 336 (394)
..-..........+.+.+.|+.|+. +..||..+.+-. .+........ .......+. ...++|+.
T Consensus 463 ~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~-------~v~~m~~~rs---~~g~~~~~~-~ly~vGG~ 531 (571)
T KOG4441|consen 463 NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT-------MVAPMTSPRS---AVGVVVLGG-KLYAVGGF 531 (571)
T ss_pred ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCcee-------EcccCccccc---cccEEEECC-EEEEEecc
Confidence 1111222233444778888887763 777888876521 2222222221 222222222 57778887
Q ss_pred CC-----cEEEEEecCCCcee
Q 016185 337 EG-----KIFVWELQSSPPVL 352 (394)
Q Consensus 337 dg-----~i~iwd~~~~~~~~ 352 (394)
|| +|..||..+.+...
T Consensus 532 ~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 532 DGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred cCccccceeEEcCCCCCceee
Confidence 75 46677766664433
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.23 E-value=0.099 Score=43.97 Aligned_cols=228 Identities=12% Similarity=0.051 Sum_probs=121.3
Q ss_pred ceeeecCCCceeeeecccccccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeee-c---
Q 016185 2 ARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQS-Y--- 77 (394)
Q Consensus 2 ~~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~-~--- 77 (394)
++..+|++.+. .+... ..+..+.+..+ ..+|..+...| .-+.|+.-++..+.++++..-.....-.. .
T Consensus 8 ~~L~vGt~~Gl-~~~~~-~~~~~~~~i~~--~~~I~ql~vl~----~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 8 DRLLVGTEDGL-YVYDL-SDPSKPTRILK--LSSITQLSVLP----ELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CEEEEEECCCE-EEEEe-cCCccceeEee--cceEEEEEEec----ccCEEEEEcCCccEEEEchhhccccccccccccc
Confidence 45678888873 33322 22233333322 33499999998 45666666665699999876544331100 0
Q ss_pred -----ccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCC-----eeEEEEEecCCceeEEEEcCCCCcEEEEc
Q 016185 78 -----VDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----KLHKSFVGHGDSINEIRTQPLKPSLVVSA 147 (394)
Q Consensus 78 -----~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 147 (394)
..-.....+...+......+...|+.+. ...|.+|.+... +..+.+. -...+.+++|.+ +.++.|
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~ 154 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVG 154 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEE
Confidence 0001122333333112234442444444 458888887653 3445555 346788999985 456666
Q ss_pred eeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccC---------CCcccEEEEEecCCCCeeEEee
Q 016185 148 SKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAG---------GHRNEVLSVDFHPSDIYRIASC 218 (394)
Q Consensus 148 ~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~s~ 218 (394)
. .....+.|+.++.....+.... ....++..+... ++.+|++.
T Consensus 155 ~--------------------------~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~ 206 (275)
T PF00780_consen 155 T--------------------------SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY 206 (275)
T ss_pred e--------------------------CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe
Confidence 5 3457788888766544432100 012234444443 44555542
Q ss_pred ccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCC
Q 016185 219 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 296 (394)
Q Consensus 219 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 296 (394)
|..-.+.|...... . ...+.. .....++.+...+++.... +.|.+|++.+++
T Consensus 207 --~~~g~fv~~~G~~~--------------------r--~~~i~W-~~~p~~~~~~~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 207 --DNIGVFVNKNGEPS--------------------R--KSTIQW-SSAPQSVAYSSPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred --cceEEEEcCCCCcC--------------------c--ccEEEc-CCchhEEEEECCEEEEECC-CEEEEEECcCCc
Confidence 33344444433110 0 112222 3355677777778877665 559999999886
No 371
>PHA03098 kelch-like protein; Provisional
Probab=97.19 E-value=0.049 Score=50.76 Aligned_cols=105 Identities=8% Similarity=0.021 Sum_probs=54.0
Q ss_pred eCcEEEEeecC------CeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCC--------Cc
Q 016185 274 LGDFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE--------GK 339 (394)
Q Consensus 274 ~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------g~ 339 (394)
.+...+.|+.+ ..+..||..+.+-. .+...+..... ..+...++ .+++.|+.+ ..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~-------~~~~~p~~r~~--~~~~~~~~--~iyv~GG~~~~~~~~~~~~ 457 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWS-------KGSPLPISHYG--GCAIYHDG--KIYVIGGISYIDNIKVYNI 457 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeee-------ecCCCCccccC--ceEEEECC--EEEEECCccCCCCCcccce
Confidence 36666666632 45888998776421 11111111111 11223344 466666643 23
Q ss_pred EEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccC-----CeEEEEEcCC
Q 016185 340 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRWDAIP 393 (394)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~ 393 (394)
+.+||..+++...+..+... ......+.+ +++.++.||.+ ..+.+||..+
T Consensus 458 v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 458 VESYNPVTNKWTELSSLNFP--RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEEecCCCCceeeCCCCCcc--cccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 88899888754444333311 111122222 66777777754 4688888764
No 372
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.15 Score=45.05 Aligned_cols=239 Identities=14% Similarity=0.106 Sum_probs=137.0
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccc
Q 016185 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSN 168 (394)
Q Consensus 89 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~ 168 (394)
+... +++....++-.....+...+................-..++.++.+.+.++....
T Consensus 36 v~~~--~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~------------------- 94 (381)
T COG3391 36 VAVN--PDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGD------------------- 94 (381)
T ss_pred eEEc--CccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCC-------------------
Confidence 4444 7775344444333355555544222222122111233567777755557777766
Q ss_pred eeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeecc---CCcEEEEEccccceeeccccccCCC
Q 016185 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTYVEKSFTWTDL 245 (394)
Q Consensus 169 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~ 245 (394)
+..|.+.|..+.+...... -......++++| ++..+..+.. ++++.+.|..+.+.
T Consensus 95 ------~~~v~vid~~~~~~~~~~~----vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~----------- 152 (381)
T COG3391 95 ------SNTVSVIDTATNTVLGSIP----VGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV----------- 152 (381)
T ss_pred ------CCeEEEEcCcccceeeEee----eccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE-----------
Confidence 7999999988777777665 233667899999 6655555444 68888888887432
Q ss_pred CCCCCccccccceeeeecCCCceEEEEEe--CcEEE-EeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEE
Q 016185 246 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 322 (394)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (394)
+.....-..+ ..++++ |..++ +-..++.|.+.|........ ......+. ....-..+.+
T Consensus 153 ------------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~----~~~~P~~i~v 214 (381)
T COG3391 153 ------------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVG----VGTGPAGIAV 214 (381)
T ss_pred ------------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccc----cCCCCceEEE
Confidence 2222221122 556665 66444 44578999999977664211 00000111 1123356889
Q ss_pred eecCCcceEEEEeCC--CcEEEEEecCCCceeeEE-eccCCccCCeeEEEeccCCCEEEEecc-CCeEEEEEcCC
Q 016185 323 SCDFHYNAAAIGNRE--GKIFVWELQSSPPVLIAR-LSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAIP 393 (394)
Q Consensus 323 ~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~ 393 (394)
.|++.. ..++-..+ +.+...|..++. .... +.. +.. ....+..+|+|+.+.+... .+.+.+-|..+
T Consensus 215 ~~~g~~-~yV~~~~~~~~~v~~id~~~~~--v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 215 DPDGNR-VYVANDGSGSNNVLKIDTATGN--VTATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CCCCCE-EEEEeccCCCceEEEEeCCCce--EEEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 999963 23332222 688888888773 2222 221 212 4567899999998888743 46777776543
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.048 Score=48.14 Aligned_cols=139 Identities=13% Similarity=0.138 Sum_probs=86.4
Q ss_pred eeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---------CcEEEEeec
Q 016185 213 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---------GDFILSKSV 283 (394)
Q Consensus 213 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~l~~~~~ 283 (394)
-+|.++.....++-.|+..++ .+..+..+.. |.-+.+. ...-+.|-.
T Consensus 347 lil~~~~~~~~l~klDIE~GK-----------------------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs 402 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGK-----------------------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLS 402 (644)
T ss_pred eEeeCCCCcCcceeeecccce-----------------------eeeEeeccCC-cceeeccCCcchhcccccccEEeec
Confidence 345566666777878888744 3555555555 3333332 123345567
Q ss_pred CCeEEEecCCCCCCCCCCCcceecccccC----CCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccC
Q 016185 284 DNEIVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA 359 (394)
Q Consensus 284 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (394)
|..|.-||.+-.... .+..-++ ....-.|.+-..+| ++++|+.+|.|++||-... .....++
T Consensus 403 ~n~vfriDpRv~~~~-------kl~~~q~kqy~~k~nFsc~aTT~sG---~IvvgS~~GdIRLYdri~~--~AKTAlP-- 468 (644)
T KOG2395|consen 403 DNSVFRIDPRVQGKN-------KLAVVQSKQYSTKNNFSCFATTESG---YIVVGSLKGDIRLYDRIGR--RAKTALP-- 468 (644)
T ss_pred CCceEEecccccCcc-------eeeeeeccccccccccceeeecCCc---eEEEeecCCcEEeehhhhh--hhhhccc--
Confidence 889999999854321 1111111 12234555555666 8999999999999997332 2334455
Q ss_pred CccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 360 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 360 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
+...+|..+..+.+|++|+..+. ..+.+-+
T Consensus 469 gLG~~I~hVdvtadGKwil~Tc~-tyLlLi~ 498 (644)
T KOG2395|consen 469 GLGDAIKHVDVTADGKWILATCK-TYLLLID 498 (644)
T ss_pred ccCCceeeEEeeccCcEEEEecc-cEEEEEE
Confidence 77789999999999999887654 3454444
No 374
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.13 E-value=0.1 Score=42.46 Aligned_cols=118 Identities=16% Similarity=0.089 Sum_probs=70.8
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCC--eEEEEECCCCeeEEEEEecC-CceeEEEEcCCCCcEEEEceeeeEEeeccc
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKVIIISSLSL 158 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~ 158 (394)
|....+.--+.+..+|. ++-+.+.-| .|+.+|+.+++......-.. ---..++... ..+..-.-.
T Consensus 41 Hd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk--------- 108 (264)
T PF05096_consen 41 HDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWK--------- 108 (264)
T ss_dssp --TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESS---------
T ss_pred CCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEec---------
Confidence 44444444444446776 667777666 69999999998776655221 1122344433 233333334
Q ss_pred eeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccce
Q 016185 159 ICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 234 (394)
++...+||..+-+.+..+. ....=..++. ++..|+.......++.+|..+.+.
T Consensus 109 ----------------~~~~f~yd~~tl~~~~~~~----y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 109 ----------------EGTGFVYDPNTLKKIGTFP----YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp ----------------SSEEEEEETTTTEEEEEEE-----SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred ----------------CCeEEEEccccceEEEEEe----cCCcceEEEc---CCCEEEEECCccceEEECCcccce
Confidence 8999999999999888887 4455567773 555666666678899999888544
No 375
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.19 Score=44.45 Aligned_cols=195 Identities=14% Similarity=0.055 Sum_probs=119.5
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEce--eeeEEeeccceeeeeeeccceeee
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS--KVIIISSLSLICLLLFIRSNCLRV 172 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~~i~~~~~~~~~~~~~~~~~~~~~ 172 (394)
+.+....++...++.|.+.|..+.+.......-. ....++++|+++.+.++-. .
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~----------------------- 138 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNG----------------------- 138 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccC-----------------------
Confidence 7777456666667899999988777777665333 5678999995555555555 3
Q ss_pred ccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEe-eccCCcEEEEEccccceeeccccccCCCCCCCCc
Q 016185 173 GQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 251 (394)
Q Consensus 173 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 251 (394)
++.+.+.|..+++...... .-..+ ..++++| ++..++. -..++.|.+.|........ .
T Consensus 139 --~~~vsvid~~t~~~~~~~~---vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~------------- 197 (381)
T COG3391 139 --NNTVSVIDAATNKVTATIP---VGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-G------------- 197 (381)
T ss_pred --CceEEEEeCCCCeEEEEEe---cCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-c-------------
Confidence 6889999998888888755 22234 8999999 7775544 4578999999977632100 0
Q ss_pred cccccceeeeecCCC-ceEEEEEeCcEEEEeecC---CeEEEecCCCCCCCCCCCcceeccc-ccCCCCCeEEEEEeecC
Q 016185 252 KYVQFPVFIASVHSN-YVDCNRWLGDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDF 326 (394)
Q Consensus 252 ~~~~~~~~~~~~~~~-~i~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 326 (394)
.+......... ....+..++.++...... +.+...|..++.. ... ..........+.++|++
T Consensus 198 ----~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v---------~~~~~~~~~~~~~~v~~~p~g 264 (381)
T COG3391 198 ----SVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV---------TATDLPVGSGAPRGVAVDPAG 264 (381)
T ss_pred ----ccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE---------EEeccccccCCCCceeECCCC
Confidence 00000111111 122233336644444333 5888888887642 111 11111134467899999
Q ss_pred CcceEEEE-eCCCcEEEEEecCCC
Q 016185 327 HYNAAAIG-NREGKIFVWELQSSP 349 (394)
Q Consensus 327 ~~~~l~~~-~~dg~i~iwd~~~~~ 349 (394)
. .+.+. ...+.+.+-|..+..
T Consensus 265 ~--~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 265 K--AAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C--EEEEEecCCCeEEEEeCCCCc
Confidence 4 55554 445788888887763
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.05 E-value=0.003 Score=36.14 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=28.4
Q ss_pred cCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 362 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 362 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
...|..++|+|...+||.++.||.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4679999999999999999999999999874
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.14 Score=43.38 Aligned_cols=169 Identities=11% Similarity=-0.010 Sum_probs=94.6
Q ss_pred eEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec-----------CCeEEEEECCCC
Q 016185 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-----------NGIIRVIDVSNE 118 (394)
Q Consensus 50 ~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~-----------dg~i~vwd~~~~ 118 (394)
..|+++ ..++.+++..++..+..+............+..... |+|. +-++... -|.|+.++. .+
T Consensus 78 g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~--pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g 152 (307)
T COG3386 78 GRLIAC-EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD--PDGR-IWFGDMGYFDLGKSEERPTGSLYRVDP-DG 152 (307)
T ss_pred CeEEEE-ccccEEEeccCCceeEEeccccCCCCcCCCCceeEc--CCCC-EEEeCCCccccCccccCCcceEEEEcC-CC
Confidence 334433 455777887666653343322222223444556555 8887 3333222 133444443 46
Q ss_pred eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC--C----cEEEEe
Q 016185 119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT--G----ICILIF 192 (394)
Q Consensus 119 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~--~----~~~~~~ 192 (394)
..++.+..+-..-+.|+|+|++..++++=+. .+.|..|++.. + +.....
T Consensus 153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~-------------------------~~~i~r~~~d~~~g~~~~~~~~~~ 207 (307)
T COG3386 153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTP-------------------------ANRIHRYDLDPATGPIGGRRGFVD 207 (307)
T ss_pred CEEEeecCcEEecCceEECCCCCEEEEEeCC-------------------------CCeEEEEecCcccCccCCcceEEE
Confidence 6666666655666899999955455555555 67888887752 1 111111
Q ss_pred eccCCCcccEEEEEecCCCCeeEEeeccCC-cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEE
Q 016185 193 AGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 271 (394)
Q Consensus 193 ~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 271 (394)
. ....+..-.++... ++++.+++..+| .|..|+... + .+..+......++++
T Consensus 208 ~--~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pdG-~-----------------------l~~~i~lP~~~~t~~ 260 (307)
T COG3386 208 F--DEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPDG-K-----------------------LLGEIKLPVKRPTNP 260 (307)
T ss_pred c--cCCCCCCCceEEeC-CCCEEEecccCCceEEEECCCC-c-----------------------EEEEEECCCCCCccc
Confidence 1 02334555677776 777665555444 899999883 2 244555555677788
Q ss_pred EEeC
Q 016185 272 RWLG 275 (394)
Q Consensus 272 ~~~~ 275 (394)
+|-|
T Consensus 261 ~FgG 264 (307)
T COG3386 261 AFGG 264 (307)
T ss_pred eEeC
Confidence 8864
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.082 Score=50.88 Aligned_cols=100 Identities=13% Similarity=0.243 Sum_probs=72.1
Q ss_pred EEEEeecCCeEEEEECCCC-eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcE
Q 016185 100 FLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESV 178 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (394)
.++.|+..|.+...|+... .+...=..-.++|++++|+. ++.+++.|-. +|.|
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~-------------------------~G~V 154 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLG-------------------------DGHV 154 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccC-------------------------CCcE
Confidence 7888999999998887543 11111122357999999998 8889999888 9999
Q ss_pred EEEEecCCcEEEEeeccCCCcccEEEE---EecCCCCeeEEeeccCCcEEEEEccc
Q 016185 179 RLWNVQTGICILIFAGAGGHRNEVLSV---DFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
.+||+..++..+.+. .|..+.+++ .+.. ++..++++...|. +|.+.-
T Consensus 155 ~v~D~~~~k~l~~i~---e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 155 TVWDMHRAKILKVIT---EHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred EEEEccCCcceeeee---ecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEEEe
Confidence 999999999988887 455544443 3333 4556888877776 666544
No 379
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.089 Score=46.89 Aligned_cols=157 Identities=9% Similarity=0.043 Sum_probs=90.5
Q ss_pred CccceeEEEEEeeCCCcceEEEE---ecCC-c-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec
Q 016185 32 GKRPLYAVVFNFIDSRYFNVFAT---VGGN-R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (394)
Q Consensus 32 h~~~v~~i~~sp~~~~~~~~las---~~~d-~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 106 (394)
-...+..-+|+| ++..++- -... . +.++++.+++....+.. .+.-..-+|+ |||+.++++...
T Consensus 191 ~~~~~~~p~ws~----~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~------~g~~~~P~fs--pDG~~l~f~~~r 258 (425)
T COG0823 191 SGSLILTPAWSP----DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF------NGNNGAPAFS--PDGSKLAFSSSR 258 (425)
T ss_pred cCcceeccccCc----CCCceEEEEEecCCCceEEEEeccCCccceeecc------CCccCCccCC--CCCCEEEEEECC
Confidence 345677788888 4444333 2344 2 89999998876555441 1111224555 999977778888
Q ss_pred CCeE--EEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCc--EEEEE
Q 016185 107 NGII--RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDES--VRLWN 182 (394)
Q Consensus 107 dg~i--~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~--i~vwd 182 (394)
||.. .+.|+..+. ...+....+.-..=.|+|++..++++.+. .|. |.+++
T Consensus 259 dg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr-------------------------~G~p~I~~~~ 312 (425)
T COG0823 259 DGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDR-------------------------GGRPQIYLYD 312 (425)
T ss_pred CCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCC-------------------------CCCcceEEEC
Confidence 8764 555666555 33354333333466799955555555555 554 55556
Q ss_pred ecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeecc-CCc--EEEEEccc
Q 016185 183 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNT--VKIWSMKE 231 (394)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-dg~--v~iwd~~~ 231 (394)
.+.+...+... ....-..-.|+| ++++|+..+. +|. |.+.|+.+
T Consensus 313 ~~g~~~~riT~----~~~~~~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 313 LEGSQVTRLTF----SGGGNSNPVWSP-DGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCCCceeEeec----cCCCCcCccCCC-CCCEEEEEeccCCceeeEEeccCC
Confidence 65554433222 222222778899 8888777664 344 55555544
No 380
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.084 Score=47.06 Aligned_cols=205 Identities=13% Similarity=0.027 Sum_probs=101.8
Q ss_pred eEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccC-CcEEEEEecCCc
Q 016185 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQD-ESVRLWNVQTGI 187 (394)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d-~~i~vwd~~~~~ 187 (394)
.+.+-|.. +...+.+..-...+..-+|+|+...+....-. ... ..+.++|+++++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~-----------------------~~~~~~i~~~~l~~g~ 229 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFE-----------------------LGGCPRIYYLDLNTGK 229 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEe-----------------------cCCCceEEEEeccCCc
Confidence 34444433 54555555455567778899844433333211 002 469999999888
Q ss_pred EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEE--EEEccccceeeccccccCCCCCCCCccccccceeeeecCC
Q 016185 188 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK--IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 265 (394)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~--iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (394)
...... ....-..-+|+|+...++++...||... ++|+..... . .+....+..
T Consensus 230 ~~~i~~----~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~-------------------~Lt~~~gi~ 284 (425)
T COG0823 230 RPVILN----FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--P-------------------RLTNGFGIN 284 (425)
T ss_pred cceeec----cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--e-------------------ecccCCccc
Confidence 766664 3444556789993344555666677654 455555220 0 011111111
Q ss_pred CceEEEEEeCcEEEEee-cCCe--EEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEe-CCCc--
Q 016185 266 NYVDCNRWLGDFILSKS-VDNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGK-- 339 (394)
Q Consensus 266 ~~i~~~~~~~~~l~~~~-~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~-- 339 (394)
. -.++..+|+.++-.+ ..|. |.++|++.... .++......-..-.++|++. +++..+ .+|.
T Consensus 285 ~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----------~riT~~~~~~~~p~~SpdG~--~i~~~~~~~g~~~ 351 (425)
T COG0823 285 T-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----------TRLTFSGGGNSNPVWSPDGD--KIVFESSSGGQWD 351 (425)
T ss_pred c-CccCCCCCCEEEEEeCCCCCcceEEECCCCCce----------eEeeccCCCCcCccCCCCCC--EEEEEeccCCcee
Confidence 1 111222366655444 4444 66666665541 22222111112557899995 444444 3455
Q ss_pred EEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEe
Q 016185 340 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 380 (394)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 380 (394)
|.+.|+.++.. ...+... .....-.|.++++.+...
T Consensus 352 i~~~~~~~~~~--~~~lt~~---~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 352 IDKNDLASGGK--IRILTST---YLNESPSWAPNGRMIMFS 387 (425)
T ss_pred eEEeccCCCCc--EEEcccc---ccCCCCCcCCCCceEEEe
Confidence 66666666542 3333321 222234556666655533
No 381
>PHA03098 kelch-like protein; Provisional
Probab=96.91 E-value=0.12 Score=48.13 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=37.1
Q ss_pred EeCcEEEEeecC--------CeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCC-----Cc
Q 016185 273 WLGDFILSKSVD--------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-----GK 339 (394)
Q Consensus 273 ~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----g~ 339 (394)
..+...+.|+.+ ..+.+||..+.+-.. +.....+......+ ..++ .+++.|+.+ +.
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-------~~~~~~~r~~~~~~--~~~~--~iyv~GG~~~~~~~~~ 504 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE-------LSSLNFPRINASLC--IFNN--KIYVVGGDKYEYYINE 504 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceee-------CCCCCcccccceEE--EECC--EEEEEcCCcCCcccce
Confidence 336666666542 238889988764211 11111111111122 2245 566777654 46
Q ss_pred EEEEEecCCCceeeEE
Q 016185 340 IFVWELQSSPPVLIAR 355 (394)
Q Consensus 340 i~iwd~~~~~~~~~~~ 355 (394)
+.+||..+.+...+..
T Consensus 505 v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 505 IEVYDDKTNTWTLFCK 520 (534)
T ss_pred eEEEeCCCCEEEecCC
Confidence 8889988775444433
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.15 Score=41.85 Aligned_cols=164 Identities=10% Similarity=0.098 Sum_probs=101.1
Q ss_pred cCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCe
Q 016185 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (394)
Q Consensus 31 ~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~ 109 (394)
+-...|.++.|+| +.+.|.+..+.. -.|+=..+|+.+.++.... -...-.+.+. .+|+ ++++--.++.
T Consensus 83 g~~~nvS~LTynp----~~rtLFav~n~p~~iVElt~~GdlirtiPL~g----~~DpE~Ieyi--g~n~-fvi~dER~~~ 151 (316)
T COG3204 83 GETANVSSLTYNP----DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG----FSDPETIEYI--GGNQ-FVIVDERDRA 151 (316)
T ss_pred cccccccceeeCC----CcceEEEecCCCceEEEEecCCceEEEecccc----cCChhHeEEe--cCCE-EEEEehhcce
Confidence 4455699999999 445555555544 5566557888887776322 1122235555 6777 8888888899
Q ss_pred EEEEECCCCeeEEE-----EE----ec-CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 110 IRVIDVSNEKLHKS-----FV----GH-GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 110 i~vwd~~~~~~~~~-----~~----~~-~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
+.++.+.....+.. +. .+ ......++|.|.+..++ .+-. ..-+.
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKE-------------------------r~P~~ 205 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKE-------------------------RNPIG 205 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEc-------------------------cCCcE
Confidence 99888765532211 11 12 45678899999555444 4444 56677
Q ss_pred EEEecCCcEEEEeeccCCC-------cccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 180 LWNVQTGICILIFAGAGGH-------RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 180 vwd~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
||.+..+...........+ -..|.++.|++..+.+|+-+..++.+.-.|...
T Consensus 206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 7766533211111100011 245788999987788888888888888877766
No 383
>PHA02790 Kelch-like protein; Provisional
Probab=96.84 E-value=0.18 Score=46.23 Aligned_cols=174 Identities=11% Similarity=-0.036 Sum_probs=85.2
Q ss_pred cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC--cEEEEEccccceeeccccccCCCCCCCCcccc
Q 016185 177 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 254 (394)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (394)
.+..||..+++....-... ...... +++.. ++.+.+.|+.++ .+..||..+.. |...
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~-~~r~~~-~~v~~--~~~iYviGG~~~~~sve~ydp~~n~--------W~~~--------- 346 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMN-SPRLYA-SGVPA--NNKLYVVGGLPNPTSVERWFHGDAA--------WVNM--------- 346 (480)
T ss_pred eEEEEECCCCEEEECCCCC-chhhcc-eEEEE--CCEEEEECCcCCCCceEEEECCCCe--------EEEC---------
Confidence 5677888776543322110 111111 22222 677788887643 46677765421 1111
Q ss_pred ccceeeeecCCCceEEEEEeCcEEEEeecCC---eEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceE
Q 016185 255 QFPVFIASVHSNYVDCNRWLGDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 331 (394)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 331 (394)
..+.........+...+...+.|+.++ .+..||.++.+-. .+...+.+... ..+...++ .+.
T Consensus 347 ----~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~-------~~~~m~~~r~~--~~~~~~~~--~IY 411 (480)
T PHA02790 347 ----PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ-------FGPSTYYPHYK--SCALVFGR--RLF 411 (480)
T ss_pred ----CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE-------eCCCCCCcccc--ceEEEECC--EEE
Confidence 111111112223344477777777543 4677887765321 11111111111 12223455 455
Q ss_pred EEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccC-----CeEEEEEcCC
Q 016185 332 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRWDAIP 393 (394)
Q Consensus 332 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~ 393 (394)
+.|+ .+.+||..+++...+..+. ........+.+ +++..+.||.+ ..+..||..+
T Consensus 412 v~GG---~~e~ydp~~~~W~~~~~m~--~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 412 LVGR---NAEFYCESSNTWTLIDDPI--YPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EECC---ceEEecCCCCcEeEcCCCC--CCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 6663 5788998887655444443 11122222333 67778888754 3578888764
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.81 E-value=0.31 Score=42.70 Aligned_cols=236 Identities=14% Similarity=0.113 Sum_probs=96.8
Q ss_pred EEEEee-cCCeEEEEECCCC----eeEEEEEe---cC----CceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeecc
Q 016185 100 FLVAGG-INGIIRVIDVSNE----KLHKSFVG---HG----DSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRS 167 (394)
Q Consensus 100 ~l~s~~-~dg~i~vwd~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~ 167 (394)
+|+..+ ..+.|.|.|+.+. +..+.+.. +. ..-..+..-| ++.+++|+=. .
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lG--------------d--- 150 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALG--------------D--- 150 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEE--------------E---
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEecc--------------C---
Confidence 555554 7889999998743 44555542 11 1122333446 6667666432 0
Q ss_pred ceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeec--------------------cCCcEEEE
Q 016185 168 NCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG--------------------MDNTVKIW 227 (394)
Q Consensus 168 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~--------------------~dg~v~iw 227 (394)
.-|..-|.+.+.|-++.+.........+....-+.+-|.| ..+.++|.. ...++.+|
T Consensus 151 --~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vW 227 (461)
T PF05694_consen 151 --ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVW 227 (461)
T ss_dssp --TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEE
T ss_pred --CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEE
Confidence 0011235677777766666666653223334456777788 666666643 34689999
Q ss_pred EccccceeeccccccCCCCCCCCccccccceeeeecCCC--ceEEEEEe-----CcEEEEeecCCeEEEecC-CCCCCCC
Q 016185 228 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWL-----GDFILSKSVDNEIVLWEP-KMKEQSP 299 (394)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~-----~~~l~~~~~dg~i~~~d~-~~~~~~~ 299 (394)
|+.+.+ .++.+..-.. ....|.|. ..-++.+...++|..|-. +.++-..
T Consensus 228 D~~~r~-----------------------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a 284 (461)
T PF05694_consen 228 DWSTRK-----------------------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA 284 (461)
T ss_dssp ETTTTE-----------------------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE
T ss_pred ECCCCc-----------------------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee
Confidence 999943 3333333222 23344443 112232233344443322 2221100
Q ss_pred ------------CCCcceecccccCCCCCeEEEEEeecCCcceEE-EEeCCCcEEEEEecCC-CceeeEEeccCC-----
Q 016185 300 ------------GEGTADILQKYPVPECDIWFIKFSCDFHYNAAA-IGNREGKIFVWELQSS-PPVLIARLSHAQ----- 360 (394)
Q Consensus 300 ------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~-~~~~~~~~~~~~----- 360 (394)
.....+.++.+..-..-|+.|.+|.|.+ +|. +.-.+|.|+.||+... .++++.++...+
T Consensus 285 ~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~ 362 (461)
T PF05694_consen 285 EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR--FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKG 362 (461)
T ss_dssp EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B
T ss_pred eEEEECCCcccCcccccccccccccCCCceEeEEEccCCC--EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccC
Confidence 0000011222222234578999999995 454 4557899999999874 445555443111
Q ss_pred ---------ccCCeeEEEeccCCCEEEEec
Q 016185 361 ---------SKSPIRQTAMSYDGSTILSCC 381 (394)
Q Consensus 361 ---------~~~~v~~~~~s~~~~~l~s~~ 381 (394)
-.+...-+..|.||++|...+
T Consensus 363 ~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 363 DHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --TTS------S----EEE-TTSSEEEEE-
T ss_pred CCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 112346688888999887653
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.81 E-value=0.0038 Score=48.67 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=66.4
Q ss_pred EEEEeecCCeEEEEECCCC-eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcE
Q 016185 100 FLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESV 178 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i 178 (394)
-+++|+.+|.|.+|++... .....+..-...|.++--.-+++.+..++.. ||.|
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~-------------------------dg~i 126 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQ-------------------------DGRI 126 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEecc-------------------------CCce
Confidence 6999999999999998622 1111122222334433333334457777887 9999
Q ss_pred EEEEecCCcEEEEeeccCCCc-ccEEEEEecCCCCeeEEee--ccCCcEEEEEccc
Q 016185 179 RLWNVQTGICILIFAGAGGHR-NEVLSVDFHPSDIYRIASC--GMDNTVKIWSMKE 231 (394)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~s~--~~dg~v~iwd~~~ 231 (394)
+.|++.-++.+.... .|+ .++..+.... .+..+..+ |.|..++.|++..
T Consensus 127 r~~n~~p~k~~g~~g---~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 127 RACNIKPNKVLGYVG---QHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeccccCceeeeec---cccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 999998877766655 465 4555555544 55666666 7777777777766
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.80 E-value=0.31 Score=42.65 Aligned_cols=277 Identities=10% Similarity=0.005 Sum_probs=107.5
Q ss_pred cceEEEEecCCc--EEEEEcCCCce----eEEeeecccCCcccceEEEEEEEcCCCCcEEEEee------cCCeEEEEEC
Q 016185 48 YFNVFATVGGNR--VTVYQCLEGGV----IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDV 115 (394)
Q Consensus 48 ~~~~las~~~d~--i~vw~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~------~dg~i~vwd~ 115 (394)
..++|+..+-+. |.|.|..+... .+.+....-....+-..--....-|+|+ +++++- .-|-+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 456777776543 99999885432 2222210000000111111222338888 777652 2256888887
Q ss_pred CCCeeEEEEEec---CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEe
Q 016185 116 SNEKLHKSFVGH---GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIF 192 (394)
Q Consensus 116 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~ 192 (394)
++.+........ ...-+++-|.| ..+.++|... -.++ .-..-+....+..+.-..++.+||+.+.+.++++
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeW--g~P~---~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i 238 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEW--GAPS---MFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI 238 (461)
T ss_dssp TT--EEEE--SB-TT------EEEET-TTTEEEE-B-----HH---HHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred ccccccceeccCCCCCCCCCCeEEcC-CCCEEEEecc--CChh---hcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence 777777666532 23446788889 7788888764 0000 0000001122333334678999999999999998
Q ss_pred eccCCCcccEEEEEec--CCCCeeEEeeccCCcEEEEEc-cccceeeccccccCCCCCCCCccccccceeeeecCCCceE
Q 016185 193 AGAGGHRNEVLSVDFH--PSDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 269 (394)
Q Consensus 193 ~~~~~~~~~i~~~~~~--~~~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 269 (394)
.... .......+.|. |....-|+.+....+|..|-- ..+.-..++..+....+..... ....+..+..-+.-|+
T Consensus 239 dLg~-~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~--lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 239 DLGE-EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI--LPEMLKPFGAVPPLIT 315 (461)
T ss_dssp ES-T-TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-----GGGGGG-EE-----
T ss_pred ecCC-CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc--ccccccccccCCCceE
Confidence 7421 12335566665 422344555555666666654 3322222221111110000000 0000011111244577
Q ss_pred EEEEe--CcEEEEee-cCCeEEEecCCCCCCCCCCCcceecccc--------c--CCCCCeEEEEEeecCCcceEEEEe
Q 016185 270 CNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKY--------P--VPECDIWFIKFSCDFHYNAAAIGN 335 (394)
Q Consensus 270 ~~~~~--~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~--------~--~~~~~i~~~~~~~~~~~~~l~~~~ 335 (394)
.|..+ .++|..+. ..|.|+.||+.....+...+...+=..+ + .-.+....+..|.||+ ++.+|.|
T Consensus 316 DI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGk-RlYvTnS 393 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGK-RLYVTNS 393 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSS-EEEEE--
T ss_pred eEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCe-EEEEEee
Confidence 77776 66666555 5999999999987643221111100000 0 0112346788999996 4444443
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.017 Score=55.19 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=75.3
Q ss_pred CceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEe
Q 016185 266 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 345 (394)
Q Consensus 266 ~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 345 (394)
..+.+.+.-+..++.|+..|.+...|....-. ....-.....+|++++|+.+| ..++.|-.+|.|.+||+
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~--------~~~~ne~v~~~Vtsvafn~dg--~~l~~G~~~G~V~v~D~ 159 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLG--------PLHQNERVQGPVTSVAFNQDG--SLLLAGLGDGHVTVWDM 159 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccc--------hhhcCCccCCcceeeEecCCC--ceeccccCCCcEEEEEc
Confidence 34444555577889999999999998876421 122223345789999999999 68999999999999999
Q ss_pred cCCCceeeEEeccCCccCCe---eEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 346 QSSPPVLIARLSHAQSKSPI---RQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v---~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
..++ ..+.+. .|..+. ..+.+..++..+.++..-|. +|++
T Consensus 160 ~~~k--~l~~i~--e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 160 HRAK--ILKVIT--EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCc--ceeeee--ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 9975 344444 222333 33444456667888877776 5654
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.69 E-value=0.24 Score=46.32 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=77.1
Q ss_pred cceeEEEEEeeCCCcceEEEEec------CCc---EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEe
Q 016185 34 RPLYAVVFNFIDSRYFNVFATVG------GNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las~~------~d~---i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 104 (394)
..+...+++| +|+.+|... .+. +.+++. .+.. ..+.. ......-.|+ |+|+ .|++.
T Consensus 350 ~~vsspaiSp----dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~------g~~~t~PsWs--pDG~-~lw~v 414 (591)
T PRK13616 350 GNITSAALSR----SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE------GHSLTRPSWS--LDAD-AVWVV 414 (591)
T ss_pred cCcccceECC----CCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec------CCCCCCceEC--CCCC-ceEEE
Confidence 3577888998 677666554 232 555553 2222 23221 1124445666 8877 66665
Q ss_pred ecC------------CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeee
Q 016185 105 GIN------------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRV 172 (394)
Q Consensus 105 ~~d------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~ 172 (394)
... +.+.+.++..++... ...+.|..+.|+| ++..++...
T Consensus 415 ~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~------------------------ 466 (591)
T PRK13616 415 VDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII------------------------ 466 (591)
T ss_pred ecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE------------------------
Confidence 422 233333443333222 2346799999999 666665544
Q ss_pred ccCCcEEE---EEecCCc-EE---EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 173 GQDESVRL---WNVQTGI-CI---LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 173 ~~d~~i~v---wd~~~~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
++.|.+ -....|. .+ ..+. ..-...+.++.|.+ ++.+ +++..++.-.+|.+.-
T Consensus 467 --~g~v~Va~Vvr~~~G~~~l~~~~~l~--~~l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 467 --GGKVYLAVVEQTEDGQYALTNPREVG--PGLGDTAVSLDWRT-GDSL-VVGRSDPEHPVWYVNL 526 (591)
T ss_pred --CCEEEEEEEEeCCCCceeecccEEee--cccCCccccceEec-CCEE-EEEecCCCCceEEEec
Confidence 345554 2222332 01 1121 02333468899998 7774 4555555555555443
No 389
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.66 E-value=0.15 Score=47.71 Aligned_cols=74 Identities=15% Similarity=0.038 Sum_probs=42.2
Q ss_pred CCCeEEEEEeecCCcceEEEEeCCCcEEE---EEecCCCceee--EEeccCCccCCeeEEEeccCCCEEEEeccCCeEEE
Q 016185 314 ECDIWFIKFSCDFHYNAAAIGNREGKIFV---WELQSSPPVLI--ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 388 (394)
Q Consensus 314 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 388 (394)
...|..+.|||||. .++... ++.|++ -....++..+. ..+. ..-...+.++.|.+++.++ ++..++.-.+
T Consensus 447 ~g~Issl~wSpDG~--RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v 521 (591)
T PRK13616 447 PGPISELQLSRDGV--RAAMII-GGKVYLAVVEQTEDGQYALTNPREVG-PGLGDTAVSLDWRTGDSLV-VGRSDPEHPV 521 (591)
T ss_pred CCCcCeEEECCCCC--EEEEEE-CCEEEEEEEEeCCCCceeecccEEee-cccCCccccceEecCCEEE-EEecCCCCce
Confidence 34688999999995 444443 477777 33333431111 1121 1222346889999988855 5555555556
Q ss_pred EEcC
Q 016185 389 WDAI 392 (394)
Q Consensus 389 wd~~ 392 (394)
|.+.
T Consensus 522 ~~v~ 525 (591)
T PRK13616 522 WYVN 525 (591)
T ss_pred EEEe
Confidence 6543
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.076 Score=46.97 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=89.2
Q ss_pred CCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCC-------eeEEeeccCCcEEEEEccccceeeccccccCCCCC
Q 016185 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI-------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 247 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 247 (394)
...++-.|++.|+.+..+. ....|+-+.+.| +. ..-+.|=.|..|.-||+|-....
T Consensus 355 ~~~l~klDIE~GKIVeEWk----~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~------------ 417 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWK----FEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN------------ 417 (644)
T ss_pred cCcceeeecccceeeeEee----ccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcc------------
Confidence 6778889999999999998 334477777777 32 22344556888999999862110
Q ss_pred CCCccccccceeeeecC----CCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEE
Q 016185 248 KFPTKYVQFPVFIASVH----SNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 322 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~~~----~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (394)
.+...++| .....|.+-. ..++++|+.+|.|++||. .+.+ .-..+++-..+|..+..
T Consensus 418 ---------kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~--------AKTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 418 ---------KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRR--------AKTALPGLGDAIKHVDV 479 (644)
T ss_pred ---------eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhh--------hhhcccccCCceeeEEe
Confidence 11122222 1223444444 669999999999999997 3332 34456777889999999
Q ss_pred eecCCcceEEEEeCCCcEEEEEec
Q 016185 323 SCDFHYNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 323 ~~~~~~~~l~~~~~dg~i~iwd~~ 346 (394)
+.+|. ++++. -+..+.+-++.
T Consensus 480 tadGK--wil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 480 TADGK--WILAT-CKTYLLLIDTL 500 (644)
T ss_pred eccCc--EEEEe-cccEEEEEEEe
Confidence 99994 44443 35677777764
No 391
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.52 E-value=0.024 Score=49.00 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=98.9
Q ss_pred CCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCc
Q 016185 197 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 276 (394)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (394)
.....+..+-..| +++.++.-+. .++.++++.+.....++..... +... ..........+.+ |.
T Consensus 218 ~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~ds--pg~~-~~~Vte~l~lL~G-----------g~ 281 (733)
T COG4590 218 VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDS--PGDS-RHQVTEQLYLLSG-----------GF 281 (733)
T ss_pred CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcC--CCch-HHHHHHHHHHHhC-----------ce
Confidence 4556788889999 9988877665 7889999887443222111100 0000 0000000000111 56
Q ss_pred EEEEeecCCeEEEe-cCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEE
Q 016185 277 FILSKSVDNEIVLW-EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 355 (394)
Q Consensus 277 ~l~~~~~dg~i~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (394)
.++.++.||-|.-| |.+.... .+...++.++....++..+ .|+.+.+-+++-+..|++.++.-...+..+..+
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~----p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~ 355 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQ----PHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER 355 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCC----CcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhh
Confidence 77888889988776 5544322 1222344444444444433 344444678888899999988776654433333
Q ss_pred eccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcCC
Q 016185 356 LSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 356 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 393 (394)
.. ..+.-+++||.+.+|++- +.|.++++.+++
T Consensus 356 ~~-----~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~N 387 (733)
T COG4590 356 AY-----QAPQLVAMSPNQAYLLSE-DQGKIRLAQLEN 387 (733)
T ss_pred hh-----cCcceeeeCcccchheee-cCCceEEEEecC
Confidence 33 356678999999999876 457899988764
No 392
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.50 E-value=0.49 Score=41.02 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=50.2
Q ss_pred EcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCe--EEEEECCCCeeEEEEEecCCceeEEEEcCCCC
Q 016185 64 QCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI--IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP 141 (394)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 141 (394)
|..+|..+..+.......|..-.+.-+|. ++|+.+|+++..||. +.+.|+.+++..+--.+.........++|++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft--~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~- 92 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFT--DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD- 92 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B---TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcC--CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-
Confidence 45566655555432211222222233455 899867777776664 6667888877655544322333356667845
Q ss_pred cEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEec
Q 016185 142 SLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 208 (394)
Q Consensus 142 ~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~ 208 (394)
+.++-... ...|+..|+++.+....+. .....+-...|.
T Consensus 93 ~~~~Yv~~-------------------------~~~l~~vdL~T~e~~~vy~---~p~~~~g~gt~v 131 (386)
T PF14583_consen 93 RALYYVKN-------------------------GRSLRRVDLDTLEERVVYE---VPDDWKGYGTWV 131 (386)
T ss_dssp SEEEEEET-------------------------TTEEEEEETTT--EEEEEE-----TTEEEEEEEE
T ss_pred CeEEEEEC-------------------------CCeEEEEECCcCcEEEEEE---CCccccccccee
Confidence 44433333 5688888998887665555 234444334443
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.47 E-value=0.014 Score=33.39 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=29.4
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 120 (394)
....|..++|+ |... +||.+..+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~--P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWC--PTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEEC--CCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 44568889999 8888 9999999999999998 4443
No 394
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.46 E-value=0.28 Score=46.12 Aligned_cols=172 Identities=7% Similarity=0.094 Sum_probs=93.4
Q ss_pred CeeEEeeccCCcEEEEEccccceeecc--ccccCCCCCCCCccccccceeeeecCCCceEEEEEe----CcEEEEeecCC
Q 016185 212 IYRIASCGMDNTVKIWSMKEFWTYVEK--SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDN 285 (394)
Q Consensus 212 ~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~dg 285 (394)
.++++.+. .+.|.+|+++........ .......+...... ........ -+..|.-|... .+.|+.+..||
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~--D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG 124 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTP--DRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDG 124 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccc--cccccCCC-CCceeeEEEecccCCeeEEEEEecCC
Confidence 44555544 789999999874332210 01111111100000 00011111 23335555443 55889999999
Q ss_pred eEEEecCCCCC----CC---CC----CCcceecccccCCCCCeEEEEEe--ecCCcceEEEEeCCCcEEEEEecCCCcee
Q 016185 286 EIVLWEPKMKE----QS---PG----EGTADILQKYPVPECDIWFIKFS--CDFHYNAAAIGNREGKIFVWELQSSPPVL 352 (394)
Q Consensus 286 ~i~~~d~~~~~----~~---~~----~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (394)
.|.+|.++.-. .. .. ....++...+. -....+.++++ ... +++|+++....|.||-+.....+.
T Consensus 125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~--rlIAVSsNs~~VTVFaf~l~~~r~ 201 (717)
T PF08728_consen 125 DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS--RLIAVSSNSQEVTVFAFALVDERF 201 (717)
T ss_pred eEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc--eEEEEecCCceEEEEEEecccccc
Confidence 99999663211 00 00 00111111122 23478999998 444 789999988889888776531111
Q ss_pred eEEeccCCccCCeeEEEeccCC---C---EEEEeccCCeEEEEEc
Q 016185 353 IARLSHAQSKSPIRQTAMSYDG---S---TILSCCEDGAIWRWDA 391 (394)
Q Consensus 353 ~~~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~iwd~ 391 (394)
.. .+...+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 202 ~~-~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 YH-VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cc-ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11 1111345678889987643 2 7888999999999887
No 395
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.44 E-value=0.96 Score=43.66 Aligned_cols=106 Identities=11% Similarity=0.138 Sum_probs=71.1
Q ss_pred EEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCce
Q 016185 272 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 351 (394)
Q Consensus 272 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (394)
.|.|+++|. -...|++|+..+.+ .++.-..+..++..+...-.+ ..+++|.--+++.+...+..+..
T Consensus 837 ~fngkllA~--In~~vrLye~t~~~---------eLr~e~~~~~~~~aL~l~v~g--deI~VgDlm~Sitll~y~~~eg~ 903 (1096)
T KOG1897|consen 837 EFNGKLLAG--INQSVRLYEWTTER---------ELRIECNISNPIIALDLQVKG--DEIAVGDLMRSITLLQYKGDEGN 903 (1096)
T ss_pred hhCCeEEEe--cCcEEEEEEccccc---------eehhhhcccCCeEEEEEEecC--cEEEEeeccceEEEEEEeccCCc
Confidence 344666654 56789999988775 455556667788899999888 68999998888887776665422
Q ss_pred eeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 352 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
+..+...-+....+++.+-.+. ..+.+..+|.+++-...
T Consensus 904 -f~evArD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 904 -FEEVARDYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred -eEEeehhhCccceeeEEEecCc-eEEeecccccEEEEEec
Confidence 2222222445678888877554 45556677777765543
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.43 E-value=0.14 Score=47.47 Aligned_cols=116 Identities=14% Similarity=0.200 Sum_probs=69.8
Q ss_pred ceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEE
Q 016185 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (394)
Q Consensus 24 ~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (394)
.....+...-....-+.-|. .++..+.-+... +.|||...+.. ..-+.+ ...+.|..+.|...|+|+ .++
T Consensus 20 ~~t~~~~T~i~~~~li~gss----~~k~a~V~~~~~~LtIWD~~~~~l-E~~~~f---~~~~~I~dLDWtst~d~q-siL 90 (631)
T PF12234_consen 20 LLTSTFETGISNPSLISGSS----IKKIAVVDSSRSELTIWDTRSGVL-EYEESF---SEDDPIRDLDWTSTPDGQ-SIL 90 (631)
T ss_pred EEEEEEecCCCCcceEeecc----cCcEEEEECCCCEEEEEEcCCcEE-EEeeee---cCCCceeeceeeecCCCC-EEE
Confidence 33344433333444444443 233333333333 99999887763 222222 357899999999999999 777
Q ss_pred EeecCCeEEEEECC-----CC----eeEEEE--EecC-CceeEEEEcCCCCcEEEEcee
Q 016185 103 AGGINGIIRVIDVS-----NE----KLHKSF--VGHG-DSINEIRTQPLKPSLVVSASK 149 (394)
Q Consensus 103 s~~~dg~i~vwd~~-----~~----~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~ 149 (394)
+.+..+.|.++.-. .. ..++.+ ..|+ .+|.+..|.+ ++.+++.++.
T Consensus 91 aVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sGN 148 (631)
T PF12234_consen 91 AVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSGN 148 (631)
T ss_pred EEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeCC
Confidence 77778888888531 11 233333 3444 5899999998 6666655544
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.39 E-value=1 Score=43.48 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=114.6
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCC-CCcEEEEee----------cCCeEEEEECCCCeeEEEEEec-
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH- 127 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~- 127 (394)
++++|.++.+.+...+ +........+.++.|. .| +. +++.|. ..|.|.|+...+.+.++....+
T Consensus 752 l~vlD~nTf~vl~~he-f~~~E~~~Si~s~~~~--~d~~t-~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHE-FERNETALSIISCKFT--DDPNT-YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred EEEecCCceeEEeecc-ccccceeeeeeeeeec--CCCce-EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence 7778876666544433 1111222233333344 55 44 777774 3588889888774444443322
Q ss_pred -CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEE
Q 016185 128 -GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 206 (394)
Q Consensus 128 -~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 206 (394)
.+.+.++.-. ++.++|.- ...|++|++.+++.++.-. .+..++..+.
T Consensus 828 v~Gav~aL~~f--ngkllA~I---------------------------n~~vrLye~t~~~eLr~e~---~~~~~~~aL~ 875 (1096)
T KOG1897|consen 828 VKGAVYALVEF--NGKLLAGI---------------------------NQSVRLYEWTTERELRIEC---NISNPIIALD 875 (1096)
T ss_pred eccceeehhhh--CCeEEEec---------------------------CcEEEEEEccccceehhhh---cccCCeEEEE
Confidence 3455555433 44555554 4589999998886666555 6888899998
Q ss_pred ecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe-CcEEEEeecCC
Q 016185 207 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDN 285 (394)
Q Consensus 207 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg 285 (394)
..- .++.++.|..=+.+.+...+..+. ......-..++.+++++.+- ++.++-+..+|
T Consensus 876 l~v-~gdeI~VgDlm~Sitll~y~~~eg--------------------~f~evArD~~p~Wmtaveil~~d~ylgae~~g 934 (1096)
T KOG1897|consen 876 LQV-KGDEIAVGDLMRSITLLQYKGDEG--------------------NFEEVARDYNPNWMTAVEILDDDTYLGAENSG 934 (1096)
T ss_pred EEe-cCcEEEEeeccceEEEEEEeccCC--------------------ceEEeehhhCccceeeEEEecCceEEeecccc
Confidence 887 888999999888888877766321 11223345678888888875 77777778888
Q ss_pred eEEEecCCCC
Q 016185 286 EIVLWEPKMK 295 (394)
Q Consensus 286 ~i~~~d~~~~ 295 (394)
.+.+....+.
T Consensus 935 Nlf~v~~d~~ 944 (1096)
T KOG1897|consen 935 NLFTVRKDSD 944 (1096)
T ss_pred cEEEEEecCC
Confidence 8888766543
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.34 E-value=0.39 Score=38.08 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=63.8
Q ss_pred eeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEE--ecCCc-----EEEEeeccCCCcc-cE
Q 016185 131 INEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWN--VQTGI-----CILIFAGAGGHRN-EV 202 (394)
Q Consensus 131 v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd--~~~~~-----~~~~~~~~~~~~~-~i 202 (394)
-+.++|+.+...+.++-+. +-.|.-|| ..+|. .+..++..+.... ..
T Consensus 160 sNgl~Wd~d~K~fY~iDsl-------------------------n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~P 214 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSL-------------------------NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEP 214 (310)
T ss_pred CccccccccCcEEEEEccC-------------------------ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCC
Confidence 3578888755556666666 77787777 44443 2333321111111 12
Q ss_pred EEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCc
Q 016185 203 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 276 (394)
Q Consensus 203 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (394)
-.++++. +|++.+++-..++|...|+.+++ .+..+......|+|++|-|.
T Consensus 215 DGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK-----------------------~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 215 DGMTIDT-EGNLYVATFNGGTVQKVDPTTGK-----------------------ILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CcceEcc-CCcEEEEEecCcEEEEECCCCCc-----------------------EEEEEEcCCCceEEEEecCC
Confidence 2455566 88989999899999999999954 46667777889999999854
No 399
>PHA02790 Kelch-like protein; Provisional
Probab=96.24 E-value=0.69 Score=42.44 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=26.9
Q ss_pred CcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC---cEEEEEccc
Q 016185 176 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKE 231 (394)
Q Consensus 176 ~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~ 231 (394)
..+..||..+++-...-. +...... .+++.. ++.+.+.|+.++ .+..||.++
T Consensus 331 ~sve~ydp~~n~W~~~~~-l~~~r~~-~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPS-LLKPRCN-PAVASI--NNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CceEEEECCCCeEEECCC-CCCCCcc-cEEEEE--CCEEEEecCcCCCCccEEEEeCCC
Confidence 457888876654332211 1011111 122222 678788887654 366777766
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.04 E-value=0.78 Score=38.80 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=73.8
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICL 161 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~ 161 (394)
....+..+.-. ++|+ +++++..-..+.-||.....-...-+.-...|..|.|.| ++.+.+.+ .
T Consensus 143 ~~gs~~~~~r~--~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~------------ 205 (302)
T PF14870_consen 143 TSGSINDITRS--SDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-R------------ 205 (302)
T ss_dssp ----EEEEEE---TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-T------------
T ss_pred CcceeEeEEEC--CCCc-EEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-C------------
Confidence 34566666555 9998 888887776777888543323333333567899999999 55655544 4
Q ss_pred eeeeccceeeeccCCcEEEEEe-cCCcEEEE-eeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccc
Q 016185 162 LLFIRSNCLRVGQDESVRLWNV-QTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS 239 (394)
Q Consensus 162 ~~~~~~~~~~~~~d~~i~vwd~-~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 239 (394)
.|.|+.=+. ...+.-.. +.......-.+..++|.+ ++...++|+ .|.+ +.....++.-.
T Consensus 206 -------------Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGktW~--- 266 (302)
T PF14870_consen 206 -------------GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGKTWQ--- 266 (302)
T ss_dssp -------------TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTSS-E---
T ss_pred -------------CcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCccce---
Confidence 777777662 11211111 111111233489999998 777666655 4433 33333332110
Q ss_pred cccCCCCCCCCccccccceeeeecCCCceEEEEEe-CcEEEEeecCCeEEEe
Q 016185 240 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLW 290 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~ 290 (394)
.......-+..+..|.|. ++.-+..+.+|.|.-|
T Consensus 267 -----------------~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 267 -----------------KDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -----------------E-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred -----------------ECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 011111223446666665 5566666788887655
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.74 Score=37.96 Aligned_cols=171 Identities=9% Similarity=0.038 Sum_probs=103.2
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEec-CCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
....+.++.|+ |+.+ .|++......-.|+=-.+|+.++++.-. -.....+.+.. ++.+.++--+
T Consensus 84 ~~~nvS~LTyn--p~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER----------- 148 (316)
T COG3204 84 ETANVSSLTYN--PDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDER----------- 148 (316)
T ss_pred ccccccceeeC--CCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehh-----------
Confidence 44558888888 8888 6666666666566655788998887621 22345677776 6667667666
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeec-------cCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAG-------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 233 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 233 (394)
++.+.++.+........+.. ....+.....++|+| ....|+.+-...-+.||.+....
T Consensus 149 --------------~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 149 --------------DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred --------------cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCC
Confidence 88888887765533222221 111256788999999 66667777777778888877522
Q ss_pred eeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe---CcEEEEeecCCeEEEecCCCC
Q 016185 234 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMK 295 (394)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~~~d~~~~ 295 (394)
....... ...+.......-..|.++.|+ +.+++-+..++.+.-.|....
T Consensus 214 ~~l~~~~-------------~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 214 SSLSVHA-------------SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccccc-------------ccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 1111000 000111111112345666676 567777777777777776644
No 402
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.85 E-value=1.3 Score=39.85 Aligned_cols=256 Identities=11% Similarity=0.079 Sum_probs=121.7
Q ss_pred EEEEcCCCCcEEEEeecCC----eEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeee
Q 016185 90 SWACNVDGIPFLVAGGING----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFI 165 (394)
Q Consensus 90 ~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~ 165 (394)
.+.++|+|+.++++-+..| .++++|+.+++.+...-.. .....+.|.+++..++++... .
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~---------------~ 191 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFD---------------E 191 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECS---------------T
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeC---------------c
Confidence 6777899994444444444 4999999999776543211 112349999955555565543 0
Q ss_pred ccceeeeccCCcEEEEEecCCcE--EEEeeccCCCccc-EEEEEecCCCCeeEEeecc---C-CcEEEEEccccceeecc
Q 016185 166 RSNCLRVGQDESVRLWNVQTGIC--ILIFAGAGGHRNE-VLSVDFHPSDIYRIASCGM---D-NTVKIWSMKEFWTYVEK 238 (394)
Q Consensus 166 ~~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~-i~~~~~~~~~~~~l~s~~~---d-g~v~iwd~~~~~~~~~~ 238 (394)
....-..+....|+.|.+.+... ...+.. ..... ...+..++ ++++++.... + ..+.+.|+.....
T Consensus 192 ~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~--~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~---- 264 (414)
T PF02897_consen 192 DQRTSDSGYPRQVYRHKLGTPQSEDELVFEE--PDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGS---- 264 (414)
T ss_dssp TTSS-CCGCCEEEEEEETTS-GGG-EEEEC---TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTT----
T ss_pred ccccccCCCCcEEEEEECCCChHhCeeEEee--cCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCC----
Confidence 00000011123477788766542 344442 12222 66788888 7776654332 2 4577777776200
Q ss_pred ccccCCCCCCCCccccccceeeeecCC-CceEEEEEeCcEEEEee----cCCeEEEecCCCCCCCCCCCcceecccccCC
Q 016185 239 SFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWLGDFILSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVP 313 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
.......+.... +....+...++.+..-+ ..+.|...++...... .....+..+
T Consensus 265 ---------------~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------~~~~~l~~~ 323 (414)
T PF02897_consen 265 ---------------PDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPA------EWWTVLIPE 323 (414)
T ss_dssp ---------------SS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGG------GEEEEEE--
T ss_pred ---------------CcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccc------cceeEEcCC
Confidence 001122222222 33334444455333322 2456777777765410 011123333
Q ss_pred CCCeEEEEEeecCCcceEEEEeCCC--cEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEE-Ee-c--cCCeEE
Q 016185 314 ECDIWFIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL-SC-C--EDGAIW 387 (394)
Q Consensus 314 ~~~i~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~-~--~dg~i~ 387 (394)
...+.-..+...+. .+++....++ .|+++++..+ .....+.... .+.|..+...+++..+. +. | .-+.++
T Consensus 324 ~~~~~l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~~~--~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y 399 (414)
T PF02897_consen 324 DEDVSLEDVSLFKD-YLVLSYRENGSSRLRVYDLDDG--KESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVY 399 (414)
T ss_dssp SSSEEEEEEEEETT-EEEEEEEETTEEEEEEEETT-T--EEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEE
T ss_pred CCceeEEEEEEECC-EEEEEEEECCccEEEEEECCCC--cEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEE
Confidence 33333334444443 3555555555 4778888722 2333333212 24466666666655433 22 2 335677
Q ss_pred EEEcCC
Q 016185 388 RWDAIP 393 (394)
Q Consensus 388 iwd~~~ 393 (394)
.||+.+
T Consensus 400 ~~d~~t 405 (414)
T PF02897_consen 400 RYDLAT 405 (414)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 777754
No 403
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.60 E-value=0.88 Score=42.98 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=89.2
Q ss_pred ceEEEEecCCcEEEEEcCCCceeEE----eeecccC-------------CcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 49 FNVFATVGGNRVTVYQCLEGGVIAA----LQSYVDE-------------DKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 49 ~~~las~~~d~i~vw~~~~~~~~~~----~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
.+++..+....|.||++..-..... +.....+ .....|+.+....- .+...|+.+..||.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~l-g~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDL-GGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEeccc-CCeeEEEEEecCCeEE
Confidence 4577777777799999865333211 0100000 01223444444322 3344899999999999
Q ss_pred EEECCCC--------------------eeEEEEEecCCceeEEEEc--CCCCcEEEEceeeeEEeeccceeeeeeeccce
Q 016185 112 VIDVSNE--------------------KLHKSFVGHGDSINEIRTQ--PLKPSLVVSASKVIIISSLSLICLLLFIRSNC 169 (394)
Q Consensus 112 vwd~~~~--------------------~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~ 169 (394)
+|.+++- ++...+. -...++.++++ . ..+++|.++.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsN-------------------- 185 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSN-------------------- 185 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecC--------------------
Confidence 9975310 0111222 23467788887 5 5677777777
Q ss_pred eeeccCCcEEEEEecCCc-EEEEeeccCCCcccEEEEEecCCC----C-eeEEeeccCCcEEEEEc
Q 016185 170 LRVGQDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSD----I-YRIASCGMDNTVKIWSM 229 (394)
Q Consensus 170 ~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~----~-~~l~s~~~dg~v~iwd~ 229 (394)
...|.||-..... ....-. ...+...|.+|.|.+.+ | ..+++++-.|.+.+|++
T Consensus 186 -----s~~VTVFaf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 186 -----SQEVTVFAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -----CceEEEEEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7778887654321 111100 01366789999998732 2 27888999999999888
No 404
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.53 E-value=0.067 Score=29.67 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=25.8
Q ss_pred CCeeEEEeccCC---CEEEEeccCCeEEEEEcCC
Q 016185 363 SPIRQTAMSYDG---STILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 363 ~~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~ 393 (394)
+.|.++.|||+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 4888888889999999984
No 405
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.43 E-value=1 Score=35.78 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=54.2
Q ss_pred EEEEEe---CcEEEEeecCCeEEEec--CCCCCCCCCCCcceecccccCCC-CCeEEEEEeecCCcceEEEEeCCCcEEE
Q 016185 269 DCNRWL---GDFILSKSVDNEIVLWE--PKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFV 342 (394)
Q Consensus 269 ~~~~~~---~~~l~~~~~dg~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~i 342 (394)
..++|+ ..+.+.-+.+-.|.-|| ..++........... ++.+..+ ..--.+++..+| ++.++.-..++|..
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dl-rk~~~~e~~~PDGm~ID~eG--~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDL-RKSQPFESLEPDGMTIDTEG--NLYVATFNGGTVQK 237 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEe-ccCCCcCCCCCCcceEccCC--cEEEEEecCcEEEE
Confidence 356676 33555666677787777 555543222211111 1111111 111234444455 67777777899999
Q ss_pred EEecCCCceeeEEeccCCccCCeeEEEec
Q 016185 343 WELQSSPPVLIARLSHAQSKSPIRQTAMS 371 (394)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s 371 (394)
.|..+++ .+.++. -....|++++|-
T Consensus 238 ~dp~tGK--~L~eik--lPt~qitsccFg 262 (310)
T KOG4499|consen 238 VDPTTGK--ILLEIK--LPTPQITSCCFG 262 (310)
T ss_pred ECCCCCc--EEEEEE--cCCCceEEEEec
Confidence 9999995 455555 225689999996
No 406
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.42 E-value=0.08 Score=29.37 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=26.5
Q ss_pred CceeEEEEcCCCC--cEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecC
Q 016185 129 DSINEIRTQPLKP--SLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQT 185 (394)
Q Consensus 129 ~~v~~~~~~~~~~--~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~ 185 (394)
+.|.+++|+|... .+|+-.-. .+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~-------------------------~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEH-------------------------QGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEcc-------------------------CCeEEEEEccc
Confidence 3688999998555 68888777 89999999985
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.39 E-value=0.94 Score=42.32 Aligned_cols=106 Identities=9% Similarity=0.198 Sum_probs=66.7
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEec-----CCC
Q 016185 275 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-----SSP 349 (394)
Q Consensus 275 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~~~ 349 (394)
++..++-+....+.|||.+.+.. +.-..+ .....|..+.|...+.+..+.+.+..+.|.+|--. ...
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~l-------E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVL-------EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEE-------EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 45555555566899999987742 122222 34567889988765544567777778888887542 221
Q ss_pred --ceeeEEeccCCcc-CCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 350 --PVLIARLSHAQSK-SPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 350 --~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
...+.++....|. .+|.+..|.++|.+++.+| ..+.|+|
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 1334444422333 5799999999997776554 3577765
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.38 E-value=0.91 Score=41.27 Aligned_cols=120 Identities=11% Similarity=0.148 Sum_probs=72.8
Q ss_pred CCCceEEEEEe------CcEEEEeecCCeEEEecCCCCCCCCCCCc----ceecccccCCCCCeEEEEEeecCCcceEEE
Q 016185 264 HSNYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEGT----ADILQKYPVPECDIWFIKFSCDFHYNAAAI 333 (394)
Q Consensus 264 ~~~~i~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 333 (394)
.-..|..+.|. -..+++......|.+|.+........... -+.-..++.. -..+.|+|.. ..|++
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvL---pQGCVWHPk~--~iL~V 129 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVL---PQGCVWHPKK--AILTV 129 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccC---CCcccccCCC--ceEEE
Confidence 34567888886 11455557788999999873321111111 1111112211 1246799998 57777
Q ss_pred EeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEecc-CCeEEEEEc
Q 016185 334 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDA 391 (394)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~ 391 (394)
-.....=.++++.....+....+. ..+.|.+.+|.+||++|+.+-. .=.-+|||-
T Consensus 130 LT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 130 LTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 666555567788776544545554 2378999999999998886633 334788874
No 409
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.32 E-value=0.0034 Score=58.54 Aligned_cols=171 Identities=14% Similarity=0.170 Sum_probs=97.6
Q ss_pred eccCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcC--CCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeec
Q 016185 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (394)
Q Consensus 29 ~~~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~ 106 (394)
+++..+.|-.++|-..+.+.+..+ .+...||++. .|+....+..+........+.-+.|++-.-.+.++..+-.
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~~~----vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGRRL----VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HhcCCCCcccccccccCChHHHHH----hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 467778888888865332223211 1227788875 5655444443333334445566777743333348888889
Q ss_pred CCeEEEEECCCCeeEEEEEecCCceeEEEE-----------cCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccC
Q 016185 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRT-----------QPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQD 175 (394)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d 175 (394)
++.+++.++.+... ..+++|...+..++| +| |+..++.+.. |
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~-------------------------d 256 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAIS-------------------------D 256 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeec-------------------------C
Confidence 99999988765432 344457776666654 56 5666666666 8
Q ss_pred CcEEEEEec-----CCcEEEEeeccCCCc-ccEEEEEecCCCC---------eeEEeec-cCCcEEEEEccccce
Q 016185 176 ESVRLWNVQ-----TGICILIFAGAGGHR-NEVLSVDFHPSDI---------YRIASCG-MDNTVKIWSMKEFWT 234 (394)
Q Consensus 176 ~~i~vwd~~-----~~~~~~~~~~~~~~~-~~i~~~~~~~~~~---------~~l~s~~-~dg~v~iwd~~~~~~ 234 (394)
|.++.|.+. ..+++...+ .|. .+-.|..++. .. .++++++ .+..+++|.-...+.
T Consensus 257 G~v~f~Qiyi~g~~~~rclhewk---phd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 257 GSVGFYQIYITGKIVHRCLHEWK---PHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred CccceeeeeeeccccHhhhhccC---CCCCCCceeeeecc-ccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 888887653 223444444 454 3333433443 11 2334433 456688888766443
No 410
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=2.7 Score=39.53 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=38.6
Q ss_pred CCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
--.|+|++. +|+.+..+. ....++-.+.|+. ...|++...+|++++|++-.
T Consensus 63 ~~~I~If~~-sG~lL~~~~---w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRIL---WKHGELIGMGWSD--DEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHH---hcCCCeeeecccC--CceEEEEeccceEEEeecch
Confidence 457889987 577666655 3344888999994 45577888999999999876
No 411
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.20 E-value=0.33 Score=42.90 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=66.6
Q ss_pred cccceeeeeccCccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCC---
Q 016185 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--- 96 (394)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 96 (394)
.+......|......+.+|..+| ++++.|+...-+ |.++|+.++..++.++++.+. .+.|....+
T Consensus 295 ~~l~~r~~l~D~~R~~~~i~~sP----~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-------qc~wi~~~~~~~ 363 (415)
T PF14655_consen 295 APLPMRFGLPDSKREGESICLSP----SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-------QCGWIEVPEEGD 363 (415)
T ss_pred cccceEEeeccCCceEEEEEECC----CCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-------eEEEEEeecccc
Confidence 34556666777788899999999 677777765545 999999999999888877542 122221111
Q ss_pred ---------------CCcEEEEeecCCeEEEEECCCCeeEEEEEe
Q 016185 97 ---------------GIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (394)
Q Consensus 97 ---------------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 126 (394)
...+++-+-.-|.|.||.++++..+..+..
T Consensus 364 ~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 364 RDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 122344556789999999999988877764
No 412
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.83 E-value=3.4 Score=38.46 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=38.2
Q ss_pred cEEEEEecCCcEEEEeeccCCCc-------ccEEEEEecCCCC---eeEEeeccCCcEEEEEcccccee
Q 016185 177 SVRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWTY 235 (394)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~ 235 (394)
+|.-.|+++|+....++.. .|. ....-+.+.. ++ ..++.+.++|.+.+.|-++++..
T Consensus 272 s~vAld~~TG~~~W~~Q~~-~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTT-PHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCC-CCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 6778899999988877742 121 1111122222 44 47889999999999999997653
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.33 Score=47.38 Aligned_cols=113 Identities=14% Similarity=0.041 Sum_probs=72.4
Q ss_pred EEEEEcCCCCcEEEEeec-CCeEEEEECCCCee-----EEEEEe------cCCceeEEEEcCCCCcEEEEceeeeEEeec
Q 016185 89 VSWACNVDGIPFLVAGGI-NGIIRVIDVSNEKL-----HKSFVG------HGDSINEIRTQPLKPSLVVSASKVIIISSL 156 (394)
Q Consensus 89 ~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~-----~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~ 156 (394)
+.+...+|+....+.-+. +-.|..||+++-.. .+-+.. ......++.|+|.-....+.+..
T Consensus 104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~------- 176 (1405)
T KOG3630|consen 104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS------- 176 (1405)
T ss_pred eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc-------
Confidence 344444777623333333 33688899875321 111221 22345678898855555566666
Q ss_pred cceeeeeeeccceeeeccCCcEEEEEecCCc-EEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 157 SLICLLLFIRSNCLRVGQDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
|+.|++..+..-. ....+ ......++++|+| .|..++.|-..|++.-|...-
T Consensus 177 ------------------dlsl~V~~~~~~~~~v~s~----p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 177 ------------------DLSLRVKSTKQLAQNVTSF----PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred ------------------ccchhhhhhhhhhhhhccc----CcccceeeEEecc-ccceeeEecCCCeEEEeeccc
Confidence 9999998775332 22223 2567889999999 999999999999999887655
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.45 Score=46.53 Aligned_cols=153 Identities=12% Similarity=0.028 Sum_probs=91.6
Q ss_pred ccEEEEEecCCCCeeE--EeeccCCcEEEEEccccceeeccccccCCCCCCCCcccccccee---eeecCCCceEEEEEe
Q 016185 200 NEVLSVDFHPSDIYRI--ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF---IASVHSNYVDCNRWL 274 (394)
Q Consensus 200 ~~i~~~~~~~~~~~~l--~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~ 274 (394)
-+|..+...+ |.... +..+.+-.|..||++......... ..++. ..........++.|.
T Consensus 101 ~pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~---------------~~pl~~s~ts~ek~vf~~~~~wn 164 (1405)
T KOG3630|consen 101 IPIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYET---------------TVPLKNSATSFEKPVFQLKNVWN 164 (1405)
T ss_pred ccceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhh---------------ccccccccchhcccccccccccc
Confidence 3455566666 54433 333445579999999843221111 01111 112223445566776
Q ss_pred ---CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCce
Q 016185 275 ---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 351 (394)
Q Consensus 275 ---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (394)
....+....|+.|++..+..... .+..++ -....++++|+|.| ..++.|-..|++.-|...-....
T Consensus 165 P~vp~n~av~l~dlsl~V~~~~~~~~--------~v~s~p-~t~~~Tav~WSprG--KQl~iG~nnGt~vQy~P~leik~ 233 (1405)
T KOG3630|consen 165 PLVPLNSAVDLSDLSLRVKSTKQLAQ--------NVTSFP-VTNSQTAVLWSPRG--KQLFIGRNNGTEVQYEPSLEIKS 233 (1405)
T ss_pred CCccchhhhhccccchhhhhhhhhhh--------hhcccC-cccceeeEEecccc--ceeeEecCCCeEEEeecccceee
Confidence 55677778899999988765432 222222 23468899999999 68999999999998876544211
Q ss_pred eeEEeccCCccCCeeEEEeccCCCEEEEe
Q 016185 352 LIARLSHAQSKSPIRQTAMSYDGSTILSC 380 (394)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 380 (394)
.+...+... ...|.+++|-....+|++-
T Consensus 234 ~ip~Pp~~e-~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 234 EIPEPPVEE-NYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred cccCCCcCC-CcceeEEEEecceeEEEEe
Confidence 122222111 4689999998877777753
No 415
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=1.7 Score=34.04 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=20.9
Q ss_pred cceEEEEecCCc---EEEEEcCCCceeEEee
Q 016185 48 YFNVFATVGGNR---VTVYQCLEGGVIAALQ 75 (394)
Q Consensus 48 ~~~~las~~~d~---i~vw~~~~~~~~~~~~ 75 (394)
+|.++.+.+.-+ |++||+.+|+.+.+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~ 85 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEK 85 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEee
Confidence 478888877633 9999999888765544
No 416
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.62 E-value=2.5 Score=36.01 Aligned_cols=228 Identities=11% Similarity=0.006 Sum_probs=114.8
Q ss_pred ceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEe-
Q 016185 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG- 126 (394)
Q Consensus 49 ~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~- 126 (394)
+.++.+--.++ |.-|+..+++. ..+. ....+.+.... ..+. .|+++.. -+.+++.+++..+..+..
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~-~~~~------~p~~~~~~~~~--d~~g-~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKK-RVFP------SPGGFSSGALI--DAGG-RLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCce-EEEE------CCCCcccceee--cCCC-eEEEEcc--ccEEEeccCCceeEEeccc
Confidence 34555544455 88888776643 2332 11222333332 3333 4555443 355667665554333321
Q ss_pred ----cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec-CCcEEEEeeccCCCccc
Q 016185 127 ----HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ-TGICILIFAGAGGHRNE 201 (394)
Q Consensus 127 ----~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~ 201 (394)
.....+.+...| ++.+.++.... +. ...-..-.-| .+|-+. .+...+.+. .+-..
T Consensus 105 ~~~~~~~r~ND~~v~p-dG~~wfgt~~~-------------~~-~~~~~~~~~G--~lyr~~p~g~~~~l~~---~~~~~ 164 (307)
T COG3386 105 EDGLPLNRPNDGVVDP-DGRIWFGDMGY-------------FD-LGKSEERPTG--SLYRVDPDGGVVRLLD---DDLTI 164 (307)
T ss_pred cCCCCcCCCCceeEcC-CCCEEEeCCCc-------------cc-cCccccCCcc--eEEEEcCCCCEEEeec---CcEEe
Confidence 123456777777 44444432210 00 0000000123 455544 566666655 45566
Q ss_pred EEEEEecCCCCeeEEee-ccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEE
Q 016185 202 VLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 278 (394)
Q Consensus 202 i~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 278 (394)
-+.|+|+| |++.|+.+ +..+.|.-|++....... . ...........+.....++.+ |.+.
T Consensus 165 ~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~---------------~-~~~~~~~~~~~~G~PDG~~vDadG~lw 227 (307)
T COG3386 165 PNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPI---------------G-GRRGFVDFDEEPGLPDGMAVDADGNLW 227 (307)
T ss_pred cCceEECC-CCCEEEEEeCCCCeEEEEecCcccCcc---------------C-CcceEEEccCCCCCCCceEEeCCCCEE
Confidence 68999999 77555554 555888888886310000 0 001122222344555566666 5555
Q ss_pred EEeecCC-eEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEe
Q 016185 279 LSKSVDN-EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 335 (394)
Q Consensus 279 ~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 335 (394)
+++..+| .|.+|+.. ++ .+..+..+...+++++|--.....+++++.
T Consensus 228 ~~a~~~g~~v~~~~pd-G~---------l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-GK---------LLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EecccCCceEEEECCC-Cc---------EEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 4555554 89999988 54 566666665566777776532213444443
No 417
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.38 E-value=3.6 Score=36.72 Aligned_cols=163 Identities=9% Similarity=0.030 Sum_probs=88.1
Q ss_pred eEEEEEeeC--CCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEE-cC-CCCcEEEEeecCCeEE
Q 016185 37 YAVVFNFID--SRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC-NV-DGIPFLVAGGINGIIR 111 (394)
Q Consensus 37 ~~i~~sp~~--~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~l~s~~~dg~i~ 111 (394)
.|++..+.+ ....+.++.|+..| ++||++..++.... .......-+.+|..+.... .+ .....||. ---..+.
T Consensus 23 ~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~ 100 (418)
T PF14727_consen 23 GSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLS 100 (418)
T ss_pred ceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEE
Confidence 455554422 12356899999888 99999865542110 1111113566777776642 11 12213444 4445677
Q ss_pred EEECCC--Ce-------eEEEEEecCC--ceeEEEEcCC----CCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 112 VIDVSN--EK-------LHKSFVGHGD--SINEIRTQPL----KPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 112 vwd~~~--~~-------~~~~~~~~~~--~v~~~~~~~~----~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
||.+.. +. .+..+..|.- ....++.-|- +..++..-+- ||
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~-------------------------DG 155 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSM-------------------------DG 155 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEec-------------------------Cc
Confidence 777621 11 1222223321 1222222111 1345555555 99
Q ss_pred cEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 177 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
.+.+++-+.-.....+. ..--.-.+++.+ ..+.|++++.+..+.-|....
T Consensus 156 ~L~~feqe~~~f~~~lp----~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 156 SLSFFEQESFAFSRFLP----DFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred eEEEEeCCcEEEEEEcC----CCCCCcCeEEee-cCCEEEEecCceeEEEecHHH
Confidence 99999976544444443 122223467777 777899999999999998766
No 418
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.27 E-value=4.2 Score=37.09 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=46.5
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~v 112 (394)
..+|.++.+.- .| .+-.|..+++..||..+++.++.... .....|+.+... ..|+ |..|+.+| |.+
T Consensus 164 d~~V~aLv~D~----~g-~lWvgT~dGL~~fd~~~gkalql~s~----~~dk~I~al~~d--~qg~--LWVGTdqG-v~~ 229 (671)
T COG3292 164 DTPVVALVFDA----NG-RLWVGTPDGLSYFDAGRGKALQLASP----PLDKAINALIAD--VQGR--LWVGTDQG-VYL 229 (671)
T ss_pred Cccceeeeeec----cC-cEEEecCCcceEEccccceEEEcCCC----cchhhHHHHHHH--hcCc--EEEEeccc-eEE
Confidence 46788888886 44 45567788899999888876655442 122556555544 4564 88888777 556
Q ss_pred EECCC
Q 016185 113 IDVSN 117 (394)
Q Consensus 113 wd~~~ 117 (394)
.+.+.
T Consensus 230 ~e~~G 234 (671)
T COG3292 230 QEAEG 234 (671)
T ss_pred Echhh
Confidence 55443
No 419
>PRK10115 protease 2; Provisional
Probab=94.24 E-value=5.6 Score=38.46 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=44.5
Q ss_pred cceeEEEEEeeCCCcceEEEEecC----Cc--EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecC
Q 016185 34 RPLYAVVFNFIDSRYFNVFATVGG----NR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (394)
Q Consensus 34 ~~v~~i~~sp~~~~~~~~las~~~----d~--i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~d 107 (394)
-.+..+.+|| ++++||.+.+ +. +++.|+.+|..+...- ...-..++|. +|++.++++...+
T Consensus 127 ~~l~~~~~Sp----dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------~~~~~~~~w~--~D~~~~~y~~~~~ 193 (686)
T PRK10115 127 YTLGGMAITP----DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------DNVEPSFVWA--NDSWTFYYVRKHP 193 (686)
T ss_pred EEEeEEEECC----CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------cCcceEEEEe--eCCCEEEEEEecC
Confidence 3467788888 6888777643 22 8888988775322211 1111458887 7887455554322
Q ss_pred -----CeEEEEECCCC
Q 016185 108 -----GIIRVIDVSNE 118 (394)
Q Consensus 108 -----g~i~vwd~~~~ 118 (394)
..|..+++.++
T Consensus 194 ~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 194 VTLLPYQVWRHTIGTP 209 (686)
T ss_pred CCCCCCEEEEEECCCC
Confidence 46888888877
No 420
>PLN02153 epithiospecifier protein
Probab=94.21 E-value=3.5 Score=35.97 Aligned_cols=12 Identities=17% Similarity=0.545 Sum_probs=8.8
Q ss_pred CeEEEecCCCCC
Q 016185 285 NEIVLWEPKMKE 296 (394)
Q Consensus 285 g~i~~~d~~~~~ 296 (394)
..+.+||..+.+
T Consensus 217 ~~v~~yd~~~~~ 228 (341)
T PLN02153 217 NAVQFFDPASGK 228 (341)
T ss_pred CceEEEEcCCCc
Confidence 458888888764
No 421
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=2.2 Score=33.43 Aligned_cols=106 Identities=17% Similarity=0.056 Sum_probs=61.1
Q ss_pred CCCcEEEEeecC--CeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeec
Q 016185 96 DGIPFLVAGGIN--GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVG 173 (394)
Q Consensus 96 ~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~ 173 (394)
+|. ++.+.+.- ..|++||+.+++.+.+-.-....+..--...-+..+..-.-.
T Consensus 55 ~g~-i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~------------------------ 109 (262)
T COG3823 55 DGH-ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK------------------------ 109 (262)
T ss_pred CCE-EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec------------------------
Confidence 444 66666543 469999999988776554221111110000001112222222
Q ss_pred cCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccce
Q 016185 174 QDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 234 (394)
Q Consensus 174 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 234 (394)
+|.-..+|.++-+.+..+. .++.=..++.. +..|+.+....+++.-|..+...
T Consensus 110 -egvaf~~d~~t~~~lg~~~----y~GeGWgLt~d---~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 110 -EGVAFKYDADTLEELGRFS----YEGEGWGLTSD---DKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred -cceeEEEChHHhhhhcccc----cCCcceeeecC---CcceEeeCCceEEEecCHHHhhh
Confidence 8889999998888877775 55566677654 33366655566788777777443
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.12 E-value=0.44 Score=38.33 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=51.8
Q ss_pred ceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcc-eeccccc----CCCCCeEEEEEeecCCcceEEEEeCCCcEE
Q 016185 267 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA-DILQKYP----VPECDIWFIKFSCDFHYNAAAIGNREGKIF 341 (394)
Q Consensus 267 ~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~----~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 341 (394)
.+..+...++++++.+.+|.+++||+.+.+........ ..+.... .....|..+.++.+|. -+++- .+|..+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~l-sng~~y 90 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTL-SNGDSY 90 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEE-eCCCEE
Confidence 34445556889999999999999999988653222111 1111100 3456788899998884 34443 357889
Q ss_pred EEEecCCC
Q 016185 342 VWELQSSP 349 (394)
Q Consensus 342 iwd~~~~~ 349 (394)
.|+..-+.
T Consensus 91 ~y~~~L~~ 98 (219)
T PF07569_consen 91 SYSPDLGC 98 (219)
T ss_pred Eeccccce
Confidence 99877653
No 423
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.10 E-value=0.0058 Score=53.16 Aligned_cols=145 Identities=13% Similarity=0.177 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccc
Q 016185 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSN 168 (394)
Q Consensus 89 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~ 168 (394)
..|. +++. -++.++.+..+..|| +.++...... ..+....++|..+....++.+-.
T Consensus 40 ~~w~--~e~~-nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek------------------- 95 (615)
T KOG2247|consen 40 HRWR--PEGH-NLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEK------------------- 95 (615)
T ss_pred eeEe--cCCC-ceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhc-------------------
Confidence 4555 7777 588888888999999 4444443333 34556778888855566667777
Q ss_pred eeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCC
Q 016185 169 CLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 248 (394)
Q Consensus 169 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 248 (394)
.+.+.+||+.+....+ +.....+.... +.|++ ....++.+...|.+++++..+
T Consensus 96 ------~~piylwd~n~eytqq-LE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgt----------------- 148 (615)
T KOG2247|consen 96 ------TGPIYLWDVNSEYTQQ-LESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGT----------------- 148 (615)
T ss_pred ------CCCeeechhhhhhHHH-HhccCcchHHH--Hhhcc-CCccccccccccceEEEeccc-----------------
Confidence 8999999997643222 21111233333 78888 888889999999999999988
Q ss_pred CCccccccceeeeecCCCceEEEEEe-CcEEEEeecCCeEEEe
Q 016185 249 FPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLW 290 (394)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~ 290 (394)
...+.....|...+.++++. .++.+.++.|..+.+-
T Consensus 149 ------sR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 149 ------SRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred ------hhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 22333444488889999987 7777777766554443
No 424
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.95 E-value=3.1 Score=34.45 Aligned_cols=149 Identities=17% Similarity=0.096 Sum_probs=79.0
Q ss_pred ceeEEEEEeeCCCcceEEEEec--CCc--EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeE
Q 016185 35 PLYAVVFNFIDSRYFNVFATVG--GNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (394)
Q Consensus 35 ~v~~i~~sp~~~~~~~~las~~--~d~--i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i 110 (394)
.+.+.++++ +++.+|... .++ +.++. .+.....+. ....+..-+|. +++. +.+....+...
T Consensus 25 ~~~s~AvS~----dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~------~g~~l~~PS~d--~~g~-~W~v~~~~~~~ 89 (253)
T PF10647_consen 25 DVTSPAVSP----DGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL------TGGSLTRPSWD--PDGW-VWTVDDGSGGV 89 (253)
T ss_pred cccceEECC----CCCeEEEEEEcCCCCEEEEEc--CCCcceeec------cCCcccccccc--CCCC-EEEEEcCCCce
Confidence 688999999 677666655 444 55554 333333322 11244455666 8877 55554555556
Q ss_pred EEEE-CCCCeeE-EEEEe--cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec--
Q 016185 111 RVID-VSNEKLH-KSFVG--HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ-- 184 (394)
Q Consensus 111 ~vwd-~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~-- 184 (394)
+++. ..+++.. ..+.. -...|..+.++| ++..++.-.. .+.++.|.+--+.
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~----------------------~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVE----------------------DGGGGRVYVAGVVRD 146 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEe----------------------cCCCCeEEEEEEEeC
Confidence 6663 3333222 22221 112899999999 5554443331 0114566665543
Q ss_pred -CC---cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC
Q 016185 185 -TG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 222 (394)
Q Consensus 185 -~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg 222 (394)
.+ .....+.........+..+.|.+ +..+++.+...+
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~V~~~~~~ 187 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLVVLGRSAG 187 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecC-CCEEEEEeCCCC
Confidence 22 01111111112356889999998 777666665443
No 425
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=5.9 Score=37.42 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=28.3
Q ss_pred CCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCC
Q 016185 314 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 349 (394)
Q Consensus 314 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 349 (394)
...+..+..||+. .+|+--..+|.|.+-+.+..+
T Consensus 216 ~~~~~ki~VS~n~--~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 216 NSSVVKISVSPNR--RFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred CceEEEEEEcCCc--ceEEEEecCCcEEEEecchhh
Confidence 4567788999998 689999999999998887764
No 426
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.69 E-value=3.4 Score=34.00 Aligned_cols=167 Identities=10% Similarity=-0.025 Sum_probs=96.3
Q ss_pred cceeeeeccCc--cceeEEEEEeeCCCcceEEEEecCCc---EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCC
Q 016185 23 YRVTNKLQEGK--RPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (394)
Q Consensus 23 ~~~~~~~~~h~--~~v~~i~~sp~~~~~~~~las~~~d~---i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (394)
++..+.+. |. .-.-.+.|.. ++.++-+.+.-+ |+.+|+.+++.+....-. .....+. ++.. ++
T Consensus 33 ~~vv~~yp-Hd~~aFTQGL~~~~----~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEG---it~~---~d 100 (264)
T PF05096_consen 33 YEVVETYP-HDPTAFTQGLEFLD----DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEG---ITIL---GD 100 (264)
T ss_dssp EEEEEEEE---TT-EEEEEEEEE----TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEE---EEEE---TT
T ss_pred eEEEEECC-CCCcccCccEEecC----CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-cccccee---EEEE---CC
Confidence 45555543 43 3355688865 688888887654 999999999876655421 1122222 2222 23
Q ss_pred CcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCc
Q 016185 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDES 177 (394)
Q Consensus 98 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~ 177 (394)
+ +..-.-.++...+||..+.+.+.++.- .+.=+.++.. +..++.|-+ ...
T Consensus 101 ~-l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~d--g~~Li~SDG--------------------------S~~ 150 (264)
T PF05096_consen 101 K-LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTSD--GKRLIMSDG--------------------------SSR 150 (264)
T ss_dssp E-EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEEC--SSCEEEE-S--------------------------SSE
T ss_pred E-EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEcC--CCEEEEECC--------------------------ccc
Confidence 3 455556789999999999999888874 3455677732 444555543 667
Q ss_pred EEEEEecCCcEEEEeeccCC--CcccEEEEEecCCCCeeEEeeccCCcEEEEEccccc
Q 016185 178 VRLWNVQTGICILIFAGAGG--HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 233 (394)
Q Consensus 178 i~vwd~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 233 (394)
+.++|..+.+....+..... .-..++-+.+. ++...+-.-....|...|..+++
T Consensus 151 L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 151 LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp EEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-B
T ss_pred eEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCe
Confidence 88888877766666553211 11245566666 56666666666667777777754
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.69 E-value=7.5 Score=37.94 Aligned_cols=122 Identities=10% Similarity=0.023 Sum_probs=67.9
Q ss_pred EEEEeecCCeEEEEECCCCeeEEEEEecCCc--------eeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceee
Q 016185 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDS--------INEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLR 171 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~ 171 (394)
.|+.++.++.|.-.|..+++.+.++...... ...+.+.. ...--.. . .....-....+.++.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~-~p~~~~~--~-------~~~~~p~~~~~rV~~ 265 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYD-APAAAAG--P-------AAPAAPADCARRIIL 265 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEec-CCccccc--c-------cccccccccCCEEEE
Confidence 6777888899999999999998887643211 11122211 0000000 0 000000122346667
Q ss_pred eccCCcEEEEEecCCcEEEEeeccCCCcccE-------------EEEEecC--CCCeeEEeecc----------CCcEEE
Q 016185 172 VGQDESVRLWNVQTGICILIFAGAGGHRNEV-------------LSVDFHP--SDIYRIASCGM----------DNTVKI 226 (394)
Q Consensus 172 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~~l~s~~~----------dg~v~i 226 (394)
++.|+.+.-.|.++|+....+. ..+.| ..+.-.| .++ .+++|+. +|.|+-
T Consensus 266 ~T~Dg~LiALDA~TGk~~W~fg----~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 266 PTSDARLIALDADTGKLCEDFG----NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred ecCCCeEEEEECCCCCEEEEec----CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEE
Confidence 7779999999999999887764 21111 0111111 033 4555532 688999
Q ss_pred EEccccceee
Q 016185 227 WSMKEFWTYV 236 (394)
Q Consensus 227 wd~~~~~~~~ 236 (394)
+|.++++..-
T Consensus 341 ~Da~TGkl~W 350 (764)
T TIGR03074 341 FDVNTGALVW 350 (764)
T ss_pred EECCCCcEee
Confidence 9999976533
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.58 E-value=4.5 Score=35.09 Aligned_cols=78 Identities=21% Similarity=0.147 Sum_probs=47.4
Q ss_pred ccccCCCCCeEEEEEeecCC-----cceEEEEeCCCcEEEEEecCCCce-eeEEeccCCccCCeeEEEeccCCCEEEEec
Q 016185 308 QKYPVPECDIWFIKFSCDFH-----YNAAAIGNREGKIFVWELQSSPPV-LIARLSHAQSKSPIRQTAMSYDGSTILSCC 381 (394)
Q Consensus 308 ~~~~~~~~~i~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 381 (394)
..+..| ..+..+.|..... ..++++.-..+.|....+...... ....+ ......++..+++.|||.+.++.+
T Consensus 247 ~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~r~~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 247 FAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF-LGGFGGRPRDVAQGPDGALYVSDD 324 (331)
T ss_dssp EEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE-CTTSSS-EEEEEEETTSEEEEEE-
T ss_pred eeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc-cccCCCCceEEEEcCCCeEEEEEC
Confidence 334444 4566777775432 246666666778888888755321 11221 224445899999999999999988
Q ss_pred cCCeEE
Q 016185 382 EDGAIW 387 (394)
Q Consensus 382 ~dg~i~ 387 (394)
.+|.|+
T Consensus 325 ~~G~iy 330 (331)
T PF07995_consen 325 SDGKIY 330 (331)
T ss_dssp TTTTEE
T ss_pred CCCeEe
Confidence 899875
No 429
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.55 E-value=0.0093 Score=51.94 Aligned_cols=142 Identities=19% Similarity=0.237 Sum_probs=91.1
Q ss_pred eeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 016185 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (394)
Q Consensus 36 v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd 114 (394)
-....|-| .+.-++.++.+. +..|| +.++..-... ..+....++|. .++...++.+-..+.+.+||
T Consensus 37 pi~~~w~~----e~~nlavaca~tiv~~YD-~agq~~le~n------~tg~aldm~wD--kegdvlavlAek~~piylwd 103 (615)
T KOG2247|consen 37 PIIHRWRP----EGHNLAVACANTIVIYYD-KAGQVILELN------PTGKALDMAWD--KEGDVLAVLAEKTGPIYLWD 103 (615)
T ss_pred cceeeEec----CCCceehhhhhhHHHhhh-hhcceecccC------CchhHhhhhhc--cccchhhhhhhcCCCeeech
Confidence 34455666 333366666666 88899 4444433332 23444557777 57775677778889999999
Q ss_pred CCCCeeEEEEE-ecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEee
Q 016185 115 VSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFA 193 (394)
Q Consensus 115 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~ 193 (394)
+.+... .++. +....-.-+.|++ +...++.+.. .|.+.+++..+.+.+....
T Consensus 104 ~n~eyt-qqLE~gg~~s~sll~wsK-g~~el~ig~~-------------------------~gn~viynhgtsR~iiv~G 156 (615)
T KOG2247|consen 104 VNSEYT-QQLESGGTSSKSLLAWSK-GTPELVIGNN-------------------------AGNIVIYNHGTSRRIIVMG 156 (615)
T ss_pred hhhhhH-HHHhccCcchHHHHhhcc-CCcccccccc-------------------------ccceEEEeccchhhhhhhc
Confidence 875422 2221 1111122277888 7777788777 9999999987766655543
Q ss_pred ccCCCcccEEEEEecCCCCeeEEeeccCC
Q 016185 194 GAGGHRNEVLSVDFHPSDIYRIASCGMDN 222 (394)
Q Consensus 194 ~~~~~~~~i~~~~~~~~~~~~l~s~~~dg 222 (394)
.|..+++++++.+ .+. .+.++.|.
T Consensus 157 ---kh~RRgtq~av~l-Ed~-vil~dcd~ 180 (615)
T KOG2247|consen 157 ---KHQRRGTQIAVTL-EDY-VILCDCDN 180 (615)
T ss_pred ---ccccceeEEEecc-cce-eeecCcHH
Confidence 4999999999998 544 45555443
No 430
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=3.2 Score=41.71 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=50.3
Q ss_pred CCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCC------ce-----------eeEEec-c-CCccCCeeEEEecc
Q 016185 312 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP------PV-----------LIARLS-H-AQSKSPIRQTAMSY 372 (394)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~-----------~~~~~~-~-~~~~~~v~~~~~s~ 372 (394)
.....|+++....+| + +..++.||.|+-.-..... .. .+..+. . ..+..+|..+....
T Consensus 176 ~dg~~V~~I~~t~nG--R-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENG--R-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCC--c-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 345568888877787 4 4455556644322222110 00 000111 1 25667999999998
Q ss_pred CCCEEEEeccCCeEEEEEcCC
Q 016185 373 DGSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 373 ~~~~l~s~~~dg~i~iwd~~~ 393 (394)
....|.+-+..|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999875
No 431
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.34 E-value=4.3 Score=36.46 Aligned_cols=137 Identities=10% Similarity=0.023 Sum_probs=79.6
Q ss_pred CCcEEEEEecCCcEEEEeeccCCCcccEEEEEecCC------CCeeEEeeccCCcEEEEEccccceeeccccccCCCCCC
Q 016185 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 248 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 248 (394)
...++-.|++.|+.+..+. .|..- -+.|.|. ....-+.|-.+..|.-.|.+-....+.
T Consensus 489 ~~kLykmDIErGkvveeW~---~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~----------- 552 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWD---LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK----------- 552 (776)
T ss_pred cccceeeecccceeeeEee---cCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee-----------
Confidence 6678888999999999887 34433 5677761 112234454566677777776211000
Q ss_pred CCccccccceeeeecCCCceEE-EEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCC
Q 016185 249 FPTKYVQFPVFIASVHSNYVDC-NRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 327 (394)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (394)
......... .....+ +.-...+++.++..|.|++||.-... .-..+++-...|..+..+.+|.
T Consensus 553 ------v~esKdY~t-Kn~Fss~~tTesGyIa~as~kGDirLyDRig~r---------AKtalP~lG~aIk~idvta~Gk 616 (776)
T COG5167 553 ------VVESKDYKT-KNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---------AKTALPGLGDAIKHIDVTANGK 616 (776)
T ss_pred ------eeeehhccc-cccccccccccCceEEEecCCCceeeehhhcch---------hhhcCcccccceeeeEeecCCc
Confidence 000000001 111111 11226799999999999999965433 2334556667788999999995
Q ss_pred cceEEEEeCCCcEEEEEec
Q 016185 328 YNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~ 346 (394)
++++.+ ...+.+-|+.
T Consensus 617 --~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 617 --HILATC-KNYLLLTDVP 632 (776)
T ss_pred --EEEEee-cceEEEEecc
Confidence 444444 3466676664
No 432
>PLN02193 nitrile-specifier protein
Probab=93.31 E-value=6.5 Score=36.11 Aligned_cols=63 Identities=6% Similarity=0.045 Sum_probs=33.5
Q ss_pred ceEEEEeCC----CcEEEEEecCCCceeeEEecc-CCccCCeeEEEeccCCCEEEEeccC--------------CeEEEE
Q 016185 329 NAAAIGNRE----GKIFVWELQSSPPVLIARLSH-AQSKSPIRQTAMSYDGSTILSCCED--------------GAIWRW 389 (394)
Q Consensus 329 ~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~iw 389 (394)
.+++.++.+ ..+.+||+.+.+...+..+.. +.......++.+ ++++++.|+.+ ..+.++
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCccceeccEEEE
Confidence 456666654 468999998875443332210 011111222222 56777777753 147777
Q ss_pred EcCC
Q 016185 390 DAIP 393 (394)
Q Consensus 390 d~~~ 393 (394)
|+.+
T Consensus 408 D~~t 411 (470)
T PLN02193 408 DTET 411 (470)
T ss_pred EcCc
Confidence 7754
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.24 E-value=0.015 Score=54.49 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=65.5
Q ss_pred cccceEEEEEEEcCCCCcEEEEeecCCeEEEEECC--CCeeEEEEEe-----cCCceeEEEEcCC--CCcEEEEceeeeE
Q 016185 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFVG-----HGDSINEIRTQPL--KPSLVVSASKVII 152 (394)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~--~~~~l~s~~~~i~ 152 (394)
..+.+-.+.|... +.. .+. -.-|.+.|||+. .|+....+.- ....+.-+.|.|- +..++..+-+
T Consensus 131 f~G~v~dl~fah~-~~p-k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~--- 203 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHT-KCP-KGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK--- 203 (1283)
T ss_pred CCCCccccccccc-CCh-HHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC---
Confidence 3455555665421 111 222 334778899876 4544333332 2233444555542 3344445555
Q ss_pred EeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEE-----------ecCCCCeeEEeeccC
Q 016185 153 ISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVD-----------FHPSDIYRIASCGMD 221 (394)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~l~s~~~d 221 (394)
++.|++..+.+... ..++ +|...+..++ .+| ||..|++++.|
T Consensus 204 ----------------------~~~i~lL~~~ra~~-~l~r---sHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~d 256 (1283)
T KOG1916|consen 204 ----------------------GGEIRLLNINRALR-SLFR---SHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISD 256 (1283)
T ss_pred ----------------------CCceeEeeechHHH-HHHH---hcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecC
Confidence 78888877654332 2233 4655554443 477 88999999999
Q ss_pred CcEEEEEccc
Q 016185 222 NTVKIWSMKE 231 (394)
Q Consensus 222 g~v~iwd~~~ 231 (394)
|.++.|.+.-
T Consensus 257 G~v~f~Qiyi 266 (1283)
T KOG1916|consen 257 GSVGFYQIYI 266 (1283)
T ss_pred Cccceeeeee
Confidence 9999888765
No 434
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.21 E-value=3.4 Score=32.64 Aligned_cols=115 Identities=13% Similarity=0.174 Sum_probs=61.0
Q ss_pred CCcEEEEEecC--CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCC------cEEEE-Eccccceee-ccccccCC
Q 016185 175 DESVRLWNVQT--GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIW-SMKEFWTYV-EKSFTWTD 244 (394)
Q Consensus 175 d~~i~vwd~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg------~v~iw-d~~~~~~~~-~~~~~~~~ 244 (394)
...|.+|++.+ .+....+. .-+.|..+.++. .|++++|--.+. .+|+| +++..+... ......-+
T Consensus 37 g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG 111 (215)
T PF14761_consen 37 GCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAG 111 (215)
T ss_pred CCEEEEEEcccCCCceeEEEc----chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcc
Confidence 67899999883 34566665 458899999999 899999875432 45665 444321100 00001111
Q ss_pred C---CCCCCccccccceeeeec--CCCceEEEEEeCcEEEEeecCCeEEEecCCCCC
Q 016185 245 L---PSKFPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 296 (394)
Q Consensus 245 ~---~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 296 (394)
. +........+..+..+.. ++..|.|....|++++. .++.+.+|.+....
T Consensus 112 ~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 112 HRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKYQT 166 (215)
T ss_pred cccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEEEE
Confidence 1 111111111122222222 23334444444777764 46788898877553
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.07 E-value=5.9 Score=38.25 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=52.8
Q ss_pred CCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecC----------CCceeeE-Eec------cCCccCCeeEEEeccC--
Q 016185 313 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS----------SPPVLIA-RLS------HAQSKSPIRQTAMSYD-- 373 (394)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~-~~~------~~~~~~~v~~~~~s~~-- 373 (394)
..-.|..+.++|+| .+++..|..| |.|-.+.. ++..... .+. ...+...|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~g--~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 83 PLFEVHQISLNPTG--SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred CceeEEEEEECCCC--CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 34478899999999 5788777655 55544432 1111111 111 1234568899999996
Q ss_pred -CCEEEEeccCCeEEEEEcCC
Q 016185 374 -GSTILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 374 -~~~l~s~~~dg~i~iwd~~~ 393 (394)
+..|+.-..|+.+|+||+..
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCeEEEEecCCEEEEEecCC
Confidence 58899999999999999864
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.84 E-value=0.89 Score=36.58 Aligned_cols=68 Identities=18% Similarity=0.399 Sum_probs=47.5
Q ss_pred EeecCCcceEEEEeCCCcEEEEEecCCCceeeE-Ee---ccC------CccCCeeEEEeccCCCEEEEeccCCeEEEEEc
Q 016185 322 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RL---SHA------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 391 (394)
Q Consensus 322 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~---~~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 391 (394)
+...+ .++++-+.+|.+++||+.+.+..... .+ -.. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 18 l~~~~--~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG--SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCC--CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 44556 57999999999999999987531111 00 111 3456788999998888777765 578898886
Q ss_pred C
Q 016185 392 I 392 (394)
Q Consensus 392 ~ 392 (394)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 4
No 437
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.80 E-value=6.2 Score=34.50 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=23.4
Q ss_pred cEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCC
Q 016185 339 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 384 (394)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 384 (394)
.+.+||..+.+...+..++.. .-...+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~----~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQG----LAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCC----ceeeEEEEcCCEEEEEeccCC
Confidence 467899887755444444311 111223334677888887653
No 438
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.72 E-value=2.8 Score=30.29 Aligned_cols=104 Identities=7% Similarity=0.009 Sum_probs=62.0
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCe--------eEEEEEecCCceeEEEEcC----CCCcEEEEceeeeEEeeccceeee
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNEK--------LHKSFVGHGDSINEIRTQP----LKPSLVVSASKVIIISSLSLICLL 162 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~~~i~~~~~~~~~~~ 162 (394)
.... .|+++..-|.|.|.+..... .++.+. -...|++++--+ ++...|+.|+
T Consensus 8 G~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-------------- 71 (136)
T PF14781_consen 8 GVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-------------- 71 (136)
T ss_pred CCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec--------------
Confidence 4444 78888888999999876432 223333 334556554322 1344566655
Q ss_pred eeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecC---CCCeeEEeeccCCcEEEEEccc
Q 016185 163 LFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP---SDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 163 ~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
...+..||+.....+..- .-.+.|+++.+-. .... ++..+.+..|.-||...
T Consensus 72 ------------~t~llaYDV~~N~d~Fyk----e~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 72 ------------QTSLLAYDVENNSDLFYK----EVPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEG 126 (136)
T ss_pred ------------cceEEEEEcccCchhhhh----hCccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCC
Confidence 788999999877654332 2456777777632 1234 44444466777777655
No 439
>PLN02153 epithiospecifier protein
Probab=92.65 E-value=6.5 Score=34.32 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=27.9
Q ss_pred CcEEEEEecCCCceeeEEec-cCCccCCeeEEEeccCCCEEEEeccC--------------CeEEEEEcCC
Q 016185 338 GKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCED--------------GAIWRWDAIP 393 (394)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~iwd~~~ 393 (394)
..+.+||..+.+...+.... .+........+.+ ++++++.|+.. ..++.+|+.+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 46888998887544333211 0011111222222 56777777742 2577787754
No 440
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.50 E-value=5.7 Score=33.32 Aligned_cols=213 Identities=13% Similarity=0.143 Sum_probs=114.6
Q ss_pred ceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEec------CCcE-EEEeeccCC--Ccc
Q 016185 130 SINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQ------TGIC-ILIFAGAGG--HRN 200 (394)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~------~~~~-~~~~~~~~~--~~~ 200 (394)
.-+.|+++| .+.+.++... .+...+||.. ..+. +-.+....+ ...
T Consensus 24 N~WGia~~p-~~~~WVadng-------------------------T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~ 77 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTG-------------------------TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEG 77 (336)
T ss_pred ccceeEecC-CCCEEEecCC-------------------------cceEEeecCCcccccCCccceEEEecCCCCCCCCC
Confidence 346899999 6677777766 8899999986 1222 222221111 234
Q ss_pred cEEEEEecCCCC------------eeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeee-cCCCc
Q 016185 201 EVLSVDFHPSDI------------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNY 267 (394)
Q Consensus 201 ~i~~~~~~~~~~------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 267 (394)
..+.+.|+. .. ..++.+++||+|.-|...-....+ ......+. .....
T Consensus 78 ~PTGiVfN~-~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~------------------~~~~~~~d~s~~ga 138 (336)
T TIGR03118 78 TPTGQVFNG-SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRM------------------TRAEIVVDASQQGN 138 (336)
T ss_pred CccEEEEeC-CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccc------------------cccEEEEccCCCcc
Confidence 677888875 22 236778899999999864421100 00011111 11122
Q ss_pred e-EEEEEe----CcEEEEe-ecCCeEEEecCCCCCCCCCCCcceecccccCCCC--------CeEEEEEeecCC-cceEE
Q 016185 268 V-DCNRWL----GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC--------DIWFIKFSCDFH-YNAAA 332 (394)
Q Consensus 268 i-~~~~~~----~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~-~~~l~ 332 (394)
| ..+++- +++|..+ -..++|.+||-.-..........+. .++..-. .-..+.|..... .+.=+
T Consensus 139 vYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP--~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v 216 (336)
T TIGR03118 139 VYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP--ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEV 216 (336)
T ss_pred eeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC--CCCCCCCCcceEEECCeEEEEEEecCCcccccc
Confidence 2 233332 3444443 4578999998654321100000000 0010000 011122221110 01222
Q ss_pred EEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEecc------CCCEEEEeccCCeEEEEEcC
Q 016185 333 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY------DGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iwd~~ 392 (394)
.|..-|.|-+||.... +++++...+.-.....|+..| .+.+|+---.||+|..||..
T Consensus 217 ~G~G~G~VdvFd~~G~---l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 217 AGAGLGYVNVFTLNGQ---LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred cCCCcceEEEEcCCCc---EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence 3344578999998764 777787667777888898876 46777776789999999965
No 441
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.30 E-value=6.4 Score=33.45 Aligned_cols=158 Identities=9% Similarity=0.046 Sum_probs=74.2
Q ss_pred CCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe-C
Q 016185 197 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-G 275 (394)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 275 (394)
.-...+..+.-++ ++.+++++..-....-||.-... =..........|.+|.|. .
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~-----------------------w~~~~r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTT-----------------------WQPHNRNSSRRIQSMGFSPD 197 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS------------------------EEEE--SSS-EEEEEE-TT
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCcc-----------------------ceEEccCccceehhceecCC
Confidence 3456788888888 99988888766666677765410 011122245678888887 3
Q ss_pred cEEEEeecCCeEEEecC-CCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeE
Q 016185 276 DFILSKSVDNEIVLWEP-KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 354 (394)
Q Consensus 276 ~~l~~~~~dg~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (394)
..+......|.|+.=+. ...+. ..+.+.........+..++|.++. ...++|+ .|.+ +...+.++ .-.+
T Consensus 198 ~~lw~~~~Gg~~~~s~~~~~~~~-----w~~~~~~~~~~~~~~ld~a~~~~~--~~wa~gg-~G~l-~~S~DgGk-tW~~ 267 (302)
T PF14870_consen 198 GNLWMLARGGQIQFSDDPDDGET-----WSEPIIPIKTNGYGILDLAYRPPN--EIWAVGG-SGTL-LVSTDGGK-TWQK 267 (302)
T ss_dssp S-EEEEETTTEEEEEE-TTEEEE-----E---B-TTSS--S-EEEEEESSSS---EEEEES-TT-E-EEESSTTS-S-EE
T ss_pred CCEEEEeCCcEEEEccCCCCccc-----cccccCCcccCceeeEEEEecCCC--CEEEEeC-CccE-EEeCCCCc-cceE
Confidence 34434458888888762 21110 000112222333457889999887 4555555 5544 33334442 2222
Q ss_pred EeccCCccCCeeEEEeccCCCEEEEeccCCeEEEE
Q 016185 355 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 355 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 389 (394)
.-....-...+..+.|.++.+-++.| .+|.|--|
T Consensus 268 ~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 268 DRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp -GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 21111233568888888665555544 78877655
No 442
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.20 E-value=1.1 Score=24.58 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=27.4
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEE
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (394)
|+++.++++...++.|.++|..+++.+..+... ..-..+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 466634445556889999999998888887753 22344444
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.76 E-value=8.8 Score=33.90 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=76.3
Q ss_pred ccEEEEEecCCCCeeEEeec-----------cCC-cEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCc
Q 016185 200 NEVLSVDFHPSDIYRIASCG-----------MDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 267 (394)
Q Consensus 200 ~~i~~~~~~~~~~~~l~s~~-----------~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (394)
.....++|.+ +++++++-. ..+ .|.+++-.++... ......+......
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~-------------------~d~~~vfa~~l~~ 73 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK-------------------YDKSNVFAEELSM 73 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC-------------------cceeEEeecCCCC
Confidence 4456789998 888766642 123 6666654431100 0011122222334
Q ss_pred eEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccC----CCCCeEEEEEeecCCcceEEEEeC------
Q 016185 268 VDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCDFHYNAAAIGNR------ 336 (394)
Q Consensus 268 i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~~~~~------ 336 (394)
...+++. +. ++++......++.|......... .....+..+.. +......++|.|++. .++..++.
T Consensus 74 p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 74 VTGLAVAVGG-VYVATPPDILFLRDKDGDDKADG-EREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVT 150 (367)
T ss_pred ccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCC-ccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceec
Confidence 4667765 33 44445444444445543221110 01112233332 234477899999984 34444421
Q ss_pred ------------CCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccC
Q 016185 337 ------------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 383 (394)
Q Consensus 337 ------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 383 (394)
.|.|.-++...++ ...+. .++ .....++|+|+|+++++-..+
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~---~e~~a-~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGK---LRVVA-HGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCe---EEEEe-cCc-CCCccceECCCCCEEEEccCC
Confidence 1344445544432 22222 133 345689999999888765433
No 444
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.70 E-value=8.7 Score=33.72 Aligned_cols=193 Identities=12% Similarity=0.152 Sum_probs=100.8
Q ss_pred CCcEEEEEecCCcEEEEeeccCCCcccEEEEEecC----CCCe-eEEeec-cC---CcEEEEEccccceeeccccccCCC
Q 016185 175 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP----SDIY-RIASCG-MD---NTVKIWSMKEFWTYVEKSFTWTDL 245 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~-~l~s~~-~d---g~v~iwd~~~~~~~~~~~~~~~~~ 245 (394)
++-+.+||+. |+.++.+.. +.++.+.... .... -|+.++ .+ .+|++|.+......+.....
T Consensus 77 ~~GL~VYdL~-Gk~lq~~~~-----Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~---- 146 (381)
T PF02333_consen 77 KGGLYVYDLD-GKELQSLPV-----GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD---- 146 (381)
T ss_dssp TTEEEEEETT-S-EEEEE-S-----S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB----
T ss_pred CCCEEEEcCC-CcEEEeecC-----CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC----
Confidence 8899999994 666766642 2333333221 0222 133443 32 46999988641111100000
Q ss_pred CCCCCccccccceeeeecCCCceEEEEEe-----Cc-EEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEE
Q 016185 246 PSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 319 (394)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 319 (394)
...++ ......+..+++. |. +++....+|.+..|.+..... .....+.++++.... .+..
T Consensus 147 --------~~~p~---~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~--g~v~~~lVR~f~~~s-Q~EG 212 (381)
T PF02333_consen 147 --------PAAPI---ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGD--GKVSATLVREFKVGS-QPEG 212 (381)
T ss_dssp --------TTC-E---E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TT--SSEEEEEEEEEE-SS--EEE
T ss_pred --------CCccc---ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCC--CcEeeEEEEEecCCC-cceE
Confidence 00011 1112235555552 33 677778899998888764321 111334677776644 6777
Q ss_pred EEEeecCCcceEEEEeCCCcEEEEEecCCC---ceeeEEeccCCccCCeeEEEecc--CC--CEEEEeccCCeEEEEEcC
Q 016185 320 IKFSCDFHYNAAAIGNREGKIFVWELQSSP---PVLIARLSHAQSKSPIRQTAMSY--DG--STILSCCEDGAIWRWDAI 392 (394)
Q Consensus 320 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~~s~--~~--~~l~s~~~dg~i~iwd~~ 392 (394)
+...... ..|+.+-++.-|.-|+.+... ...+...........|-.|++-. ++ -+|+|.-.+++..||+.+
T Consensus 213 CVVDDe~--g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 213 CVVDDET--GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEEETTT--TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred EEEeccc--CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 7777666 589999999888888876432 22333333233456788888753 33 345555578899999976
Q ss_pred C
Q 016185 393 P 393 (394)
Q Consensus 393 ~ 393 (394)
.
T Consensus 291 ~ 291 (381)
T PF02333_consen 291 G 291 (381)
T ss_dssp T
T ss_pred C
Confidence 4
No 445
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.67 E-value=6.3 Score=33.09 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=49.6
Q ss_pred cEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee------cCCeEEEEECCCCeeEEEEEe-----c
Q 016185 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLHKSFVG-----H 127 (394)
Q Consensus 59 ~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~-----~ 127 (394)
+|++||....+-...-. .-.+.|..+.|. .+.+ +++.|. ....+..||+.+... ..+.+ -
T Consensus 17 ~lC~yd~~~~qW~~~g~-----~i~G~V~~l~~~--~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~i 87 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGN-----GISGTVTDLQWA--SNNQ-LLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSI 87 (281)
T ss_pred EEEEEECCCCEeecCCC-----CceEEEEEEEEe--cCCE-EEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccC
Confidence 39999976655432222 367789999997 5555 777764 355688899876543 23332 2
Q ss_pred CCceeEEEEcCCCCcEEE
Q 016185 128 GDSINEIRTQPLKPSLVV 145 (394)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~ 145 (394)
.++|..+.+...+...+.
T Consensus 88 pgpv~a~~~~~~d~~~~~ 105 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFW 105 (281)
T ss_pred CCcEEEEEeeccCCceEE
Confidence 367888888654554444
No 446
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.55 E-value=4.8 Score=35.62 Aligned_cols=143 Identities=10% Similarity=0.015 Sum_probs=83.2
Q ss_pred CCcEEEEEecCC--cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcc
Q 016185 175 DESVRLWNVQTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 252 (394)
Q Consensus 175 d~~i~vwd~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (394)
.|.+.=|-+... ...-.+.. ...++|.++.|++ |.+.+++--.+.+|.+++....+..
T Consensus 42 SggatgvvvkgpndDVpiSfdm--~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~----------------- 101 (657)
T KOG2377|consen 42 SGGATGVVVKGPNDDVPISFDM--DDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQ----------------- 101 (657)
T ss_pred cCCeeEEEEeCCCCCCCceeee--cCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchh-----------------
Confidence 455555655422 12222221 3567999999999 9999999999999999998442110
Q ss_pred ccccceeeeecCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceE
Q 016185 253 YVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 331 (394)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 331 (394)
.......+.....|....|. ..-++... +.-+.+|.....+. .++..+.+...|.-..|+++..--+|
T Consensus 102 --l~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pekr--------slRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 102 --LEYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPEKR--------SLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred --hHHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchhhh--------hhhhhhhcccCccEEEEccccceEee
Confidence 01111223334457777886 33344333 33356666554432 34555666777888889998853333
Q ss_pred EEEeCCCcEEEEEecCC
Q 016185 332 AIGNREGKIFVWELQSS 348 (394)
Q Consensus 332 ~~~~~dg~i~iwd~~~~ 348 (394)
+++-..+.+.=+.++++
T Consensus 171 ~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 171 STTVLENVLNPFHFRAG 187 (657)
T ss_pred eccccccccccEEEeec
Confidence 44434555555555544
No 447
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=6.3 Score=39.74 Aligned_cols=73 Identities=15% Similarity=0.006 Sum_probs=42.5
Q ss_pred eecCCCceEEEEEe-CcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCc
Q 016185 261 ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 339 (394)
Q Consensus 261 ~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 339 (394)
+..+...+.+..+. ..-.+.+..-+.+-+|+..... ....+...... .+.++ ..++++..||.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-----~~~~~--~~~v~~h~Dgs 257 (993)
T KOG1983|consen 194 LSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---------VQSAYLPNGQL-----ESRDG--SHFVSYHTDGS 257 (993)
T ss_pred ccccccccceeeeecCCCcceeeeeeeeeehhccccc---------chhhccccccc-----CccCC--ceEEEEEecCC
Confidence 33444555555554 3344445556666666655432 12222221111 15566 68999999999
Q ss_pred EEEEEecCCC
Q 016185 340 IFVWELQSSP 349 (394)
Q Consensus 340 i~iwd~~~~~ 349 (394)
+.+||...+.
T Consensus 258 ~~fWd~s~g~ 267 (993)
T KOG1983|consen 258 YAFWDVSSGK 267 (993)
T ss_pred EEeeecCCCc
Confidence 9999999864
No 448
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.39 E-value=7.4 Score=32.28 Aligned_cols=162 Identities=12% Similarity=0.099 Sum_probs=91.2
Q ss_pred CcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCc-EEEEEccccceeeccccccCCCCCCCCccccccceeeeecC
Q 016185 186 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 264 (394)
Q Consensus 186 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (394)
|+.+.... -...-..++++|....-++.+-.-|+ ..++|....+...... ...-..+.+|
T Consensus 58 Gk~v~~~~----lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~---------------s~~~RHfyGH 118 (366)
T COG3490 58 GKIVFATA----LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV---------------SQEGRHFYGH 118 (366)
T ss_pred Cceeeeee----cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe---------------cccCceeecc
Confidence 44444443 33444578888855565666655554 5677877743211100 0111233344
Q ss_pred CCceEEEEEeCcEEEEeec-----CCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeC---
Q 016185 265 SNYVDCNRWLGDFILSKSV-----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR--- 336 (394)
Q Consensus 265 ~~~i~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--- 336 (394)
.- ..-+|.+|...-. -|.|-+||.+..- +.+.++..|.-.--.+.+.+|++ .++.+..
T Consensus 119 Gv----fs~dG~~LYATEndfd~~rGViGvYd~r~~f--------qrvgE~~t~GiGpHev~lm~DGr--tlvvanGGIe 184 (366)
T COG3490 119 GV----FSPDGRLLYATENDFDPNRGVIGVYDAREGF--------QRVGEFSTHGIGPHEVTLMADGR--TLVVANGGIE 184 (366)
T ss_pred cc----cCCCCcEEEeecCCCCCCCceEEEEeccccc--------ceecccccCCcCcceeEEecCCc--EEEEeCCcee
Confidence 32 1112667766543 3679999998543 25667777776667889999994 5555432
Q ss_pred ---------------CCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEe
Q 016185 337 ---------------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 380 (394)
Q Consensus 337 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 380 (394)
.-++.+.|..+++.....+++...+.-.|..++..+||..++.+
T Consensus 185 thpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 185 THPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred cccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 22344555445533223333323455678889999998877755
No 449
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.38 E-value=15 Score=35.91 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=45.1
Q ss_pred eEEEEecCCc-EEEEEcCCCceeEEeeecccCCcc---cceEEEEEEEc--------------CCCCcEEEEeecCCeEE
Q 016185 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE---ESFYTVSWACN--------------VDGIPFLVAGGINGIIR 111 (394)
Q Consensus 50 ~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~--------------~~~~~~l~s~~~dg~i~ 111 (394)
..+..++.++ |.-.|..+|+.+-.+......... .....+++.-. ..+. .++.++.|+.+.
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~Li 273 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARLI 273 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeEE
Confidence 4455555544 888999999876655432111000 00111222111 1334 788888999999
Q ss_pred EEECCCCeeEEEEE
Q 016185 112 VIDVSNEKLHKSFV 125 (394)
Q Consensus 112 vwd~~~~~~~~~~~ 125 (394)
-.|.++|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg 287 (764)
T TIGR03074 274 ALDADTGKLCEDFG 287 (764)
T ss_pred EEECCCCCEEEEec
Confidence 99999999988775
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.33 E-value=4.2 Score=29.40 Aligned_cols=106 Identities=8% Similarity=0.194 Sum_probs=60.5
Q ss_pred cEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEee---cCCcceEEEEeCCCcEEEEEecCCCcee
Q 016185 276 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC---DFHYNAAAIGNREGKIFVWELQSSPPVL 352 (394)
Q Consensus 276 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (394)
..|+.++.-|+|.|++.......... ....++.+. -...|++++-.+ +.....|+.|+. ..|..||+.......
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGR-QDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLF 87 (136)
T ss_pred eeEEEEecCCEEEEECCCcccccccc-ccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhh
Confidence 36788888999999998765432111 011122222 234566665444 444467777775 569999999886444
Q ss_pred eEEeccCCccCCeeEEEecc----CCCEEEEeccCCeEEEEE
Q 016185 353 IARLSHAQSKSPIRQTAMSY----DGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 353 ~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~dg~i~iwd 390 (394)
.+.++ ..|+++.+-. +..++++| .+..|.-||
T Consensus 88 yke~~-----DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd 123 (136)
T PF14781_consen 88 YKEVP-----DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFD 123 (136)
T ss_pred hhhCc-----cceeEEEEEecCCCCCcEEEEC-ceEEEEEeC
Confidence 44443 5677776642 23444444 344444443
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.30 E-value=3.3 Score=41.57 Aligned_cols=157 Identities=8% Similarity=0.026 Sum_probs=84.8
Q ss_pred ecCCeEEEEECCCCeeEEEEEecCCceeEEEEc-C-------CCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCC
Q 016185 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQ-P-------LKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDE 176 (394)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~-------~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 176 (394)
+.|+.+.+|+.+++.....+.+-...|..+..- | .=..+|+.+. --
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT--------------------------~~ 149 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT--------------------------PV 149 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc--------------------------cc
Confidence 457899999999987778887776777776642 2 1123344443 33
Q ss_pred cEEEEEecCCc----E---E--EEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEcccc--ceeeccccccCCC
Q 016185 177 SVRLWNVQTGI----C---I--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF--WTYVEKSFTWTDL 245 (394)
Q Consensus 177 ~i~vwd~~~~~----~---~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~ 245 (394)
.|.++-+.-.+ . . ..+. .....|+++.... +|+.|++|- || .+|.+.-. .........-.-.
T Consensus 150 ei~ilgV~~~~~~~~~~~f~~~~~i~---~dg~~V~~I~~t~-nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 150 EIVILGVSFDEFTGELSIFNTSFKIS---VDGVSVNCITYTE-NGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred eEEEEEEEeccccCcccccccceeee---cCCceEEEEEecc-CCcEEEeec-CC--CEEEEEEeccCchhhcccccccC
Confidence 44444332111 0 0 1122 2356788888665 888666654 55 55554321 1000000000000
Q ss_pred CCCCCccccccceeee-ecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCC
Q 016185 246 PSKFPTKYVQFPVFIA-SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK 295 (394)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~ 295 (394)
........ -..+..+ ..+.++|..+..+ -+.+.+-+..|+|.+||+...
T Consensus 223 t~s~ls~l-vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 223 TKSVLSSL-VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred chhHHHHh-hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 00000000 0012222 3667889999998 457888889999999999874
No 452
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.26 E-value=15 Score=35.62 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=55.2
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCC----------CceeEEee------ecccCCcccceEEEEEEEcC-
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE----------GGVIAALQ------SYVDEDKEESFYTVSWACNV- 95 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~----------~~~~~~~~------~~~~~~~~~~v~~~~~~~~~- 95 (394)
.-.|..|.+|| +|.++|-.|..+|.|-.+.. |+.....+ .+....+...|..+.|.+..
T Consensus 84 ~f~v~~i~~n~----~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNP----TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred ceeEEEEEECC----CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 45789999999 89999999998866665532 11111111 11222445678888898443
Q ss_pred CCCcEEEEeecCCeEEEEECCCC
Q 016185 96 DGIPFLVAGGINGIIRVIDVSNE 118 (394)
Q Consensus 96 ~~~~~l~s~~~dg~i~vwd~~~~ 118 (394)
++. .|+.-..|+++++||+...
T Consensus 160 ~~~-~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 160 SDS-HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCC-eEEEEecCCEEEEEecCCC
Confidence 245 8999999999999999754
No 453
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.20 E-value=7.9 Score=32.27 Aligned_cols=159 Identities=9% Similarity=0.055 Sum_probs=96.3
Q ss_pred cCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEE
Q 016185 127 HGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 206 (394)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 206 (394)
-.+-+.++.++. ++...+.. +.-++|.|+.+......+..+ ...+.-.++.
T Consensus 85 ~~~l~~Dv~vse---~yvyvad~-------------------------ssGL~IvDIS~P~sP~~~~~l-nt~gyaygv~ 135 (370)
T COG5276 85 ARDLFADVRVSE---EYVYVADW-------------------------SSGLRIVDISTPDSPTLIGFL-NTDGYAYGVY 135 (370)
T ss_pred hhhhhheeEecc---cEEEEEcC-------------------------CCceEEEeccCCCCcceeccc-cCCceEEEEE
Confidence 345567788875 45666666 788999999876654443311 1223344454
Q ss_pred ecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCe
Q 016185 207 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNE 286 (394)
Q Consensus 207 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~ 286 (394)
. .|++...+..|.-+.+.|+.+.... ............-..++.+|++-..+..|+-
T Consensus 136 v---sGn~aYVadlddgfLivdvsdpssP--------------------~lagrya~~~~d~~~v~ISGn~AYvA~~d~G 192 (370)
T COG5276 136 V---SGNYAYVADLDDGFLIVDVSDPSSP--------------------QLAGRYALPGGDTHDVAISGNYAYVAWRDGG 192 (370)
T ss_pred e---cCCEEEEeeccCcEEEEECCCCCCc--------------------eeeeeeccCCCCceeEEEecCeEEEEEeCCC
Confidence 4 5778888887777889999884320 1111223333344677888999999999999
Q ss_pred EEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCC
Q 016185 287 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 348 (394)
Q Consensus 287 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 348 (394)
+.+-|+.....+. .+.+... ...+..+..+++. .+++... +| +.+-|....
T Consensus 193 L~ivDVSnp~sPv------li~~~n~-g~g~~sv~vsdnr--~y~vvy~-eg-vlivd~s~~ 243 (370)
T COG5276 193 LTIVDVSNPHSPV------LIGSYNT-GPGTYSVSVSDNR--AYLVVYD-EG-VLIVDVSGP 243 (370)
T ss_pred eEEEEccCCCCCe------EEEEEec-CCceEEEEecCCe--eEEEEcc-cc-eEEEecCCC
Confidence 9999998875321 2222221 2256666666665 3343333 33 556666544
No 454
>PRK10115 protease 2; Provisional
Probab=91.18 E-value=15 Score=35.58 Aligned_cols=114 Identities=8% Similarity=-0.036 Sum_probs=59.7
Q ss_pred EEEcCCCCcEEEEe-ec----CCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeee
Q 016185 91 WACNVDGIPFLVAG-GI----NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFI 165 (394)
Q Consensus 91 ~~~~~~~~~~l~s~-~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~ 165 (394)
+.++|+|+ +|+.+ .. .-.|++-|+.+++.+...-.... ..++|.+++..++++....
T Consensus 132 ~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~--------------- 193 (686)
T PRK10115 132 MAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHP--------------- 193 (686)
T ss_pred EEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecC---------------
Confidence 44459999 55543 33 33588999988764322221222 4599999555555554420
Q ss_pred ccceeeeccCCcEEEEEecCC--cEEEEeeccCCCcccEE-EEEecCCCCeeEEeec---cCCcEEEEEccc
Q 016185 166 RSNCLRVGQDESVRLWNVQTG--ICILIFAGAGGHRNEVL-SVDFHPSDIYRIASCG---MDNTVKIWSMKE 231 (394)
Q Consensus 166 ~~~~~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~s~~---~dg~v~iwd~~~ 231 (394)
. ......|..+++.++ +....+. ....... .+..+. ++.+++..+ .++.+.+++...
T Consensus 194 -~----~~~~~~v~~h~lgt~~~~d~lv~~---e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 194 -V----TLLPYQVWRHTIGTPASQDELVYE---EKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred -C----CCCCCEEEEEECCCChhHCeEEEe---eCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcC
Confidence 0 001246788888877 3344444 1222222 233333 555444433 245788888543
No 455
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.08 E-value=13 Score=34.41 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=66.7
Q ss_pred cceEEEEEEEcC-CCCcEEEEeecCCeEEEEECCC-----CeeEEEEEec-CC--c--eeEEEEcCCCCcEEEEceeeeE
Q 016185 84 ESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSN-----EKLHKSFVGH-GD--S--INEIRTQPLKPSLVVSASKVII 152 (394)
Q Consensus 84 ~~v~~~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~-~~--~--v~~~~~~~~~~~~l~s~~~~i~ 152 (394)
+.|+.++|++-- .+.+.|++..-...|.||.+.. ++.+..-..+ .. + -..+-|+| ...+|+.-..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~--- 132 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA--- 132 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec---
Confidence 467889998321 1222455556667899999862 2222221111 11 1 13567999 5566665554
Q ss_pred EeeccceeeeeeeccceeeeccCCcEEEEEecCCc--EEEEeeccCCCcccEEEEEecCCCCeeEEee-ccCCcEEEEEc
Q 016185 153 ISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGI--CILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSM 229 (394)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~-~~dg~v~iwd~ 229 (394)
...-.+++++... ....++ ..+.|.|.+|.+ ||+.|+.+ +..=.-++||-
T Consensus 133 ----------------------~dvSV~~sV~~d~srVkaDi~----~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 133 ----------------------RDVSVLPSVHCDSSRVKADIK----TSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ----------------------CceeEeeeeeeCCceEEEecc----CCceEEEEEecC-cCCEEEEEeCCeEEEEEecC
Confidence 3343455665332 233343 678899999999 77666554 44445567775
Q ss_pred cc
Q 016185 230 KE 231 (394)
Q Consensus 230 ~~ 231 (394)
..
T Consensus 186 ~q 187 (671)
T PF15390_consen 186 AQ 187 (671)
T ss_pred ch
Confidence 44
No 456
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=8.7 Score=32.03 Aligned_cols=278 Identities=10% Similarity=0.050 Sum_probs=146.5
Q ss_pred ccceeEEEEEeeCCCcceEEEEecC-CcEEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGG-NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~-d~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
.+.+..+.|+. ++...+.. .+++|.|+.+-.....+.... ..+-- -.|. -.|+ +...+..|.-+.
T Consensus 86 ~~l~~Dv~vse------~yvyvad~ssGL~IvDIS~P~sP~~~~~ln---t~gya--ygv~--vsGn-~aYVadlddgfL 151 (370)
T COG5276 86 RDLFADVRVSE------EYVYVADWSSGLRIVDISTPDSPTLIGFLN---TDGYA--YGVY--VSGN-YAYVADLDDGFL 151 (370)
T ss_pred hhhhheeEecc------cEEEEEcCCCceEEEeccCCCCcceecccc---CCceE--EEEE--ecCC-EEEEeeccCcEE
Confidence 34566677774 44444444 459999998766544433221 11222 3334 3477 888888666677
Q ss_pred EEECCCC---eeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcE
Q 016185 112 VIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC 188 (394)
Q Consensus 112 vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 188 (394)
+.|+.+. .....+......-..++.+- ++...+.. |+-+.+-|+.....
T Consensus 152 ivdvsdpssP~lagrya~~~~d~~~v~ISG---n~AYvA~~-------------------------d~GL~ivDVSnp~s 203 (370)
T COG5276 152 IVDVSDPSSPQLAGRYALPGGDTHDVAISG---NYAYVAWR-------------------------DGGLTIVDVSNPHS 203 (370)
T ss_pred EEECCCCCCceeeeeeccCCCCceeEEEec---CeEEEEEe-------------------------CCCeEEEEccCCCC
Confidence 8888754 23334443344445666653 45555555 89999999976543
Q ss_pred EEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeee--cCCC
Q 016185 189 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VHSN 266 (394)
Q Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 266 (394)
...+... .....+.++..++ +..+++.. +.-+.+-|....+.. .+.-.. ....
T Consensus 204 Pvli~~~-n~g~g~~sv~vsd-nr~y~vvy--~egvlivd~s~~ssp---------------------~~~gsyet~~p~ 258 (370)
T COG5276 204 PVLIGSY-NTGPGTYSVSVSD-NRAYLVVY--DEGVLIVDVSGPSSP---------------------TVFGSYETSNPV 258 (370)
T ss_pred CeEEEEE-ecCCceEEEEecC-CeeEEEEc--ccceEEEecCCCCCc---------------------eEeeccccCCcc
Confidence 3322210 1233778888876 55544443 344777777773210 011111 1122
Q ss_pred ceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEec
Q 016185 267 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 346 (394)
Q Consensus 267 ~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 346 (394)
.++.+..++++...+..+.-+.+-|+.+...+. ....+......-..++.+ + .++..+..+ ...+-+..
T Consensus 259 ~~s~v~Vs~~~~Yvadga~gl~~idisnp~spf------l~ss~~t~g~~a~gi~ay--~--~y~yiadkn-~g~vV~~s 327 (370)
T COG5276 259 SISTVPVSGEYAYVADGAKGLPIIDISNPPSPF------LSSSLDTAGYQAAGIRAY--G--NYNYIADKN-TGAVVDAS 327 (370)
T ss_pred cccceecccceeeeeccccCceeEeccCCCCCc------hhccccCCCccccceEEe--c--CeeEeccCC-ceEEEeCC
Confidence 233445568888777777777777777653211 222222222122223222 2 234444433 44455554
Q ss_pred CCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 347 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
..+ ...... +....+.+.+.+-+.+.+.+...++.+.||+..
T Consensus 328 ~~s--~m~~~~--g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 328 PPS--MMDKRP--GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred Chh--hccccc--CcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 432 111111 222233344444456688899999999999864
No 457
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.87 E-value=12 Score=33.85 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=87.1
Q ss_pred CCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeecc
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQ 174 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
.+...++..|+....++-.|++.|+.+.....|... -+.|.|...-.-.+ ..+-++|-+
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt-------------------~eqtlvGlS 535 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMT-------------------DEQTLVGLS 535 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcC-------------------ccceEEeec
Confidence 445535556777788888999999999999887664 57777732100000 112233333
Q ss_pred CCcEEEEEecC-CcEEEEee--ccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCc
Q 016185 175 DESVRLWNVQT-GICILIFA--GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 251 (394)
Q Consensus 175 d~~i~vwd~~~-~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 251 (394)
+..|.-.|.+. |..+.... .. .......+..-. ...+++.++..|-|++||--.
T Consensus 536 ~~svFrIDPR~~gNKi~v~esKdY-~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig-------------------- 592 (776)
T COG5167 536 DYSVFRIDPRARGNKIKVVESKDY-KTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIG-------------------- 592 (776)
T ss_pred ccceEEecccccCCceeeeeehhc-cccccccccccc--cCceEEEecCCCceeeehhhc--------------------
Confidence 77777777664 32222222 10 012222333322 445799999999999999655
Q ss_pred cccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCC
Q 016185 252 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM 294 (394)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~ 294 (394)
......+.+-...|..+... |+++++.+ ...+.+-|++-
T Consensus 593 ---~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 593 ---KRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVPI 633 (776)
T ss_pred ---chhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEeccc
Confidence 11223344455566666654 77766655 34566666653
No 458
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.47 E-value=2 Score=33.87 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=37.6
Q ss_pred eEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEe
Q 016185 330 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 380 (394)
Q Consensus 330 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 380 (394)
.|..+...+.|.+|++.........++..- +.|..+.++..|+||++-
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEE
Confidence 344446667899999996666777777632 789999999999999985
No 459
>PRK13684 Ycf48-like protein; Provisional
Probab=89.35 E-value=14 Score=32.18 Aligned_cols=155 Identities=10% Similarity=0.027 Sum_probs=78.0
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEE-EECCCCeeEEEEE-ecCCceeEEEEcCCCCcEEEEceeeeEEeecccee
Q 016185 83 EESFYTVSWACNVDGIPFLVAGGINGIIRV-IDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKVIIISSLSLIC 160 (394)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~ 160 (394)
...++.+.+. +++. +++++. .|.+.. ++ ..++.-..+. .-...++++.+.+ ++..++.+.
T Consensus 172 ~g~~~~i~~~--~~g~-~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg~------------ 233 (334)
T PRK13684 172 AGVVRNLRRS--PDGK-YVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLAR------------ 233 (334)
T ss_pred cceEEEEEEC--CCCe-EEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEec------------
Confidence 4567777765 7776 555544 555443 22 1222222222 2345788999998 566666654
Q ss_pred eeeeeccceeeeccCCcEEEEEecCCcEEEEeecc-CCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccc
Q 016185 161 LLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS 239 (394)
Q Consensus 161 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 239 (394)
.|.+.+=..+.|..-...... ......+.++.+.| ++..++ ++.+|.+.. ....++.
T Consensus 234 --------------~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~G~t----- 291 (334)
T PRK13684 234 --------------GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDGGKT----- 291 (334)
T ss_pred --------------CCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCCCCC-----
Confidence 565543233344332222210 01224578899988 666544 455675543 3333221
Q ss_pred cccCCCCCCCCccccccceeeeecCCCceEEEEEe-CcEEEEeecCCeEEEecC
Q 016185 240 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEP 292 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~~~d~ 292 (394)
|.. +.....-+.....+.+. ++..+..+..|.|..|+-
T Consensus 292 --W~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 292 --WEK-------------DPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred --CeE-------------CCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 110 00001112245555554 555666778888887764
No 460
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.35 E-value=13 Score=32.04 Aligned_cols=99 Identities=8% Similarity=0.021 Sum_probs=47.1
Q ss_pred eCcEEEEeec-----CCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCC----cEEEEE
Q 016185 274 LGDFILSKSV-----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG----KIFVWE 344 (394)
Q Consensus 274 ~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg----~i~iwd 344 (394)
.+.+.+.|+. ...+..||+.+.+-. .+..++.. ......+...++ .+.+.|+.++ .+..||
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~-------~~~~~p~~-~r~~~~~~~~~~--~iYv~GG~~~~~~~~~~~yd 192 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWF-------ELPDFPGE-PRVQPVCVKLQN--ELYVFGGGSNIAYTDGYKYS 192 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCee-------ECCCCCCC-CCCcceEEEECC--EEEEEcCCCCccccceEEEe
Confidence 3566666654 246888898866421 11112111 111122334455 5677777654 356888
Q ss_pred ecCCCceeeEEeccCCccC---CeeEEEeccCCCEEEEeccC
Q 016185 345 LQSSPPVLIARLSHAQSKS---PIRQTAMSYDGSTILSCCED 383 (394)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~d 383 (394)
..+.+...+..+....... ....+.. .++++++.|+.+
T Consensus 193 ~~~~~W~~~~~~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~ 233 (323)
T TIGR03548 193 PKKNQWQKVADPTTDSEPISLLGAASIKI-NESLLLCIGGFN 233 (323)
T ss_pred cCCCeeEECCCCCCCCCceeccceeEEEE-CCCEEEEECCcC
Confidence 8876543332221000000 1111222 356788888866
No 461
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.11 E-value=24 Score=34.69 Aligned_cols=118 Identities=9% Similarity=0.053 Sum_probs=65.6
Q ss_pred CCcEEEEEccccceeeccccccCCCCCCCC-cccccccee--eeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCC
Q 016185 221 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFP-TKYVQFPVF--IASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK 295 (394)
Q Consensus 221 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~ 295 (394)
...|.-|.++.....+...+.......... ......... .-......|.++... +..++..-.||+|.++|..+.
T Consensus 212 ~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~ 291 (753)
T PF11635_consen 212 SSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTM 291 (753)
T ss_pred CcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcc
Confidence 457999999886544443333322111111 000011111 111223457777665 778999999999999999887
Q ss_pred CCCCCC----Ccceeccc-------ccCCCCCeEEEEEeecCCcceEEEEeCCCcEE
Q 016185 296 EQSPGE----GTADILQK-------YPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 341 (394)
Q Consensus 296 ~~~~~~----~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 341 (394)
+..... .....+.. ++. ..++..++|||.+ ..++.-..+|.+.
T Consensus 292 ~~~~~~~~~~~~~~~v~s~~~~Gf~fp~-~~~~~~vafSPt~--c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 292 KELNETRTNGEPPNTVTSLFQAGFHFPC-IQPPLHVAFSPTM--CSLVQIDEDGKTK 345 (753)
T ss_pred hhhcccccccCCcccccccccccccccc-CCCCceEEECccc--ceEEEEecCCCce
Confidence 543333 11111111 111 1245578899999 5677777788765
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.11 E-value=14 Score=33.60 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=49.3
Q ss_pred CeEEEEEeecCCcceEEEEeCCCcEEEEE---------ecCCCceeeEEec-------cCCccCCeeEEEeccCC---CE
Q 016185 316 DIWFIKFSCDFHYNAAAIGNREGKIFVWE---------LQSSPPVLIARLS-------HAQSKSPIRQTAMSYDG---ST 376 (394)
Q Consensus 316 ~i~~~~~~~~~~~~~l~~~~~dg~i~iwd---------~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~---~~ 376 (394)
.|..+..++.| ..++..+.+|.+.++= +..+++....+.. .....-.+..++|+|+. ..
T Consensus 105 eV~~vl~s~~G--S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTG--SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCC--ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 56778888888 5788888888665443 1233332222211 01122346678999975 67
Q ss_pred EEEeccCCeEEEEEcCC
Q 016185 377 ILSCCEDGAIWRWDAIP 393 (394)
Q Consensus 377 l~s~~~dg~i~iwd~~~ 393 (394)
|..-+.|..||+||+..
T Consensus 183 L~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEEecCcEEEEEecCC
Confidence 88888899999999875
No 463
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.02 E-value=25 Score=34.72 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.2
Q ss_pred cccEEEEEecCCCCeeEEeeccCCcEEEEEcc
Q 016185 199 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 230 (394)
Q Consensus 199 ~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 230 (394)
..+...++|+|.+...|+.....|...+|++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~ 176 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIK 176 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEec
Confidence 45778999999888899999999999999993
No 464
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.79 E-value=13 Score=31.26 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=129.9
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEECC------CC-eeEEEEEe-----cCCceeEEEEcCCCCcEEEEceeeeEEe
Q 016185 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVS------NE-KLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKVIIIS 154 (394)
Q Consensus 87 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~~i~~~ 154 (394)
+.++++ |.+. +-++....+...+||.. .. .++-++.. .....+.+.|+. ...+.+++..
T Consensus 26 WGia~~--p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g----- 96 (336)
T TIGR03118 26 WGLSYR--PGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEG----- 96 (336)
T ss_pred ceeEec--CCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCC-----
Confidence 345555 8887 66777777899999986 11 22334432 134578888887 4556666543
Q ss_pred eccceeeeeeeccceeeeccCCcEEEEEecCCcE-----EEEeeccCCCcccE-EEEEecCC-CCeeE-EeeccCCcEEE
Q 016185 155 SLSLICLLLFIRSNCLRVGQDESVRLWNVQTGIC-----ILIFAGAGGHRNEV-LSVDFHPS-DIYRI-ASCGMDNTVKI 226 (394)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~i-~~~~~~~~-~~~~l-~s~~~dg~v~i 226 (394)
......++.+++||+|.-|....+.. ...+.. .....| ..+++... .+++| ++--..++|.+
T Consensus 97 --------~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~--s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDV 166 (336)
T TIGR03118 97 --------ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA--SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDV 166 (336)
T ss_pred --------cccceeEEEEeCCceEEeecCcCCcccccccEEEEcc--CCCcceeeeeEEeecCCCceEEEeccCCCceEE
Confidence 11234578888899999998543322 112220 122333 34555431 23444 44456789999
Q ss_pred EEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCCCCCCCCCcc
Q 016185 227 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA 304 (394)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 304 (394)
||-.-.+......+.....+..+.. .-+..+.+ .-.|+-..-+ +..=+.+..-|.|-+||+...
T Consensus 167 Fd~~f~~~~~~g~F~DP~iPagyAP----FnIqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--------- 232 (336)
T TIGR03118 167 FKGSFRPPPLPGSFIDPALPAGYAP----FNVQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--------- 232 (336)
T ss_pred ecCccccccCCCCccCCCCCCCCCC----cceEEECC-eEEEEEEecCCcccccccCCCcceEEEEcCCCc---------
Confidence 9866533222222221211211110 11111110 0001000001 222334445678999998754
Q ss_pred eeccccc--CCCCCeEEEEEeecCC----cceEEEEeCCCcEEEEEecCCCceeeEEecc-CC---ccCCeeEEEecc
Q 016185 305 DILQKYP--VPECDIWFIKFSCDFH----YNAAAIGNREGKIFVWELQSSPPVLIARLSH-AQ---SKSPIRQTAMSY 372 (394)
Q Consensus 305 ~~~~~~~--~~~~~i~~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~---~~~~v~~~~~s~ 372 (394)
.++++. +.-..-+.|+..|..- ..+|+---.||+|..||..+++ .+-.+.. .+ -...+..|.|..
T Consensus 233 -l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~--~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 233 -LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA--QLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred -EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc--eeeeecCCCCCeEEecCeEEeeeCC
Confidence 444442 2334567788776421 2456666679999999998874 4444441 11 113456778764
No 465
>PLN02193 nitrile-specifier protein
Probab=88.69 E-value=19 Score=33.06 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=16.2
Q ss_pred EeCcEEEEeecC----CeEEEecCCCCC
Q 016185 273 WLGDFILSKSVD----NEIVLWEPKMKE 296 (394)
Q Consensus 273 ~~~~~l~~~~~d----g~i~~~d~~~~~ 296 (394)
+.+++++.++.+ ..+.+||+.+.+
T Consensus 327 ~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 327 VQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred ECCcEEEEECCCCCccCceEEEECCCCE
Confidence 346666666654 458899988764
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.37 E-value=18 Score=32.29 Aligned_cols=142 Identities=8% Similarity=0.038 Sum_probs=87.2
Q ss_pred EEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--CcEEEE
Q 016185 203 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 280 (394)
Q Consensus 203 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 280 (394)
+.+-|+ |.+..+.+...|.+.-|-...... ..|+..-....++|.++.|+ .+.++.
T Consensus 26 ngvFfD--DaNkqlfavrSggatgvvvkgpnd--------------------DVpiSfdm~d~G~I~SIkFSlDnkilAV 83 (657)
T KOG2377|consen 26 NGVFFD--DANKQLFAVRSGGATGVVVKGPND--------------------DVPISFDMDDKGEIKSIKFSLDNKILAV 83 (657)
T ss_pred cceeec--cCcceEEEEecCCeeEEEEeCCCC--------------------CCCceeeecCCCceeEEEeccCcceEEE
Confidence 445555 344444444556677776655221 33444444566799999998 668888
Q ss_pred eecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCC
Q 016185 281 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 360 (394)
Q Consensus 281 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (394)
--.+..|.+++....+. ......+.+.....|....|+.+. -+|.-+..| +.+|.+.... ..++..+ .
T Consensus 84 QR~~~~v~f~nf~~d~~-----~l~~~~~ck~k~~~IlGF~W~~s~---e~A~i~~~G-~e~y~v~pek-rslRlVk--s 151 (657)
T KOG2377|consen 84 QRTSKTVDFCNFIPDNS-----QLEYTQECKTKNANILGFCWTSST---EIAFITDQG-IEFYQVLPEK-RSLRLVK--S 151 (657)
T ss_pred EecCceEEEEecCCCch-----hhHHHHHhccCcceeEEEEEecCe---eEEEEecCC-eEEEEEchhh-hhhhhhh--h
Confidence 88899999999854431 111223334445568888888775 456555444 7788776543 2333334 5
Q ss_pred ccCCeeEEEeccCCCEEE
Q 016185 361 SKSPIRQTAMSYDGSTIL 378 (394)
Q Consensus 361 ~~~~v~~~~~s~~~~~l~ 378 (394)
|...|+=..|.++.+.+.
T Consensus 152 ~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 152 HNLNVNWYMYCPETAVIL 169 (657)
T ss_pred cccCccEEEEccccceEe
Confidence 667788888888876544
No 467
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.26 E-value=14 Score=30.71 Aligned_cols=160 Identities=11% Similarity=0.017 Sum_probs=82.1
Q ss_pred ceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCCcccEEEEEecC
Q 016185 130 SINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 209 (394)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 209 (394)
.+.+.++++++..+.+.... ++.-.+|-...+....... ....+..-.|++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~-------------------------~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~ 75 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG-------------------------DGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDP 75 (253)
T ss_pred cccceEECCCCCeEEEEEEc-------------------------CCCCEEEEEcCCCcceeec----cCCccccccccC
Confidence 67889999944444444422 3334444444444433332 223778889999
Q ss_pred CCCeeEEeeccCCcEEEEE-ccccceeeccccccCCCCCCCCccccccceeeeecCC-CceEEEEEe--CcEEEEee---
Q 016185 210 SDIYRIASCGMDNTVKIWS-MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKS--- 282 (394)
Q Consensus 210 ~~~~~l~s~~~dg~v~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~~~~--- 282 (394)
++...+....+...+++. ...+. ..++..-.... ..|..+.++ |..++...
T Consensus 76 -~g~~W~v~~~~~~~~~~~~~~~g~---------------------~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~ 133 (253)
T PF10647_consen 76 -DGWVWTVDDGSGGVRVVRDSASGT---------------------GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDG 133 (253)
T ss_pred -CCCEEEEEcCCCceEEEEecCCCc---------------------ceeEEecccccCCceEEEEECCCCcEEEEEEecC
Confidence 777666666666666664 22211 01111111111 178888887 65554443
Q ss_pred cCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEe-CCCcEEE
Q 016185 283 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFV 342 (394)
Q Consensus 283 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i 342 (394)
.++.|.+--+........................+..+.|.++. .+++.+. .++.+..
T Consensus 134 ~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~--~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 134 GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS--TLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC--EEEEEeCCCCCceeE
Confidence 45777776554332210011111222222334578999999999 3444444 3443444
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.94 E-value=18 Score=31.82 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=100.6
Q ss_pred EEEEeeCCCcceEEEEecCC-cEEEEEcCCCceeEEeeecccCCcccceEEEEEE--EcCCCCcE-EEEee-cC---CeE
Q 016185 39 VVFNFIDSRYFNVFATVGGN-RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA--CNVDGIPF-LVAGG-IN---GII 110 (394)
Q Consensus 39 i~~sp~~~~~~~~las~~~d-~i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~-l~s~~-~d---g~i 110 (394)
|=.+|.+.. ..+++....+ ++.+||+ .|+.++.+.. +.++.+.+. +.-.|+.. |+.++ .+ ..|
T Consensus 59 IWvnp~dp~-kSlIigTdK~~GL~VYdL-~Gk~lq~~~~-------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l 129 (381)
T PF02333_consen 59 IWVNPADPA-KSLIIGTDKKGGLYVYDL-DGKELQSLPV-------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSL 129 (381)
T ss_dssp EE--SS-GG-G-EEEEEETTTEEEEEET-TS-EEEEE-S-------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EE
T ss_pred EecCCCCcc-cceEEEEeCCCCEEEEcC-CCcEEEeecC-------CCcceeeeecceecCCceEEEEEEecCcCCCCeE
Confidence 445664433 3444444444 4999996 5555555541 233333332 22234422 33333 32 479
Q ss_pred EEEECCCC-eeEEEEEe-------cCCceeEEEE--cCCCCc-EEEEceeeeEEeeccceeeeeeeccceeeeccCCcEE
Q 016185 111 RVIDVSNE-KLHKSFVG-------HGDSINEIRT--QPLKPS-LVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVR 179 (394)
Q Consensus 111 ~vwd~~~~-~~~~~~~~-------~~~~v~~~~~--~~~~~~-~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 179 (394)
++|.+... ..+..+.. ....++.+|+ ++.++. +++...+ +|.+.
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k-------------------------~G~~~ 184 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGK-------------------------DGRVE 184 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEET-------------------------TSEEE
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecC-------------------------CceEE
Confidence 99977531 22333321 1234566665 333333 4445556 88888
Q ss_pred EEEec---CC----cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCcc
Q 016185 180 LWNVQ---TG----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 252 (394)
Q Consensus 180 vwd~~---~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (394)
.|.+. .+ +.++.|. -...+..+..+. ....|+.+-.+.-|.-|+.+......
T Consensus 185 Qy~L~~~~~g~v~~~lVR~f~----~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~---------------- 243 (381)
T PF02333_consen 185 QYELTDDGDGKVSATLVREFK----VGSQPEGCVVDD-ETGRLYVGEEDVGIWRYDAEPEGGND---------------- 243 (381)
T ss_dssp EEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEET-TTTEEEEEETTTEEEEEESSCCC-S-----------------
T ss_pred EEEEEeCCCCcEeeEEEEEec----CCCcceEEEEec-ccCCEEEecCccEEEEEecCCCCCCc----------------
Confidence 88775 22 3566776 455788888887 66678888888777777766411100
Q ss_pred ccccceeeee--cCCCceEEEEEe----C-c-EEEEeecCCeEEEecCCCC
Q 016185 253 YVQFPVFIAS--VHSNYVDCNRWL----G-D-FILSKSVDNEIVLWEPKMK 295 (394)
Q Consensus 253 ~~~~~~~~~~--~~~~~i~~~~~~----~-~-~l~~~~~dg~i~~~d~~~~ 295 (394)
...+.... .....|..|+.- + . ++++.-.+++..+|+.+..
T Consensus 244 --~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 244 --RTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ---EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred --ceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 11121111 123456666663 2 2 4555556889999998754
No 469
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.73 E-value=32 Score=34.36 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEee-----------cCCeEEEEECC-CCeeEEEEEec
Q 016185 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-----------INGIIRVIDVS-NEKLHKSFVGH 127 (394)
Q Consensus 60 i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~-----------~dg~i~vwd~~-~~~~~~~~~~~ 127 (394)
|++.|..++..+..+..... ...-.+..+.|+-+.... ++++|. .+|.++.|++- .++.+.-+..-
T Consensus 855 I~~~d~~s~~~~~~~~l~~n-e~a~~v~~~~fs~~~~~~-~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQN-EAAFSVCAVDFSSSEYQP-FVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred EEEEcCCCCceEEEEeecCC-cchhheeeeeeccCCCce-EEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Q ss_pred CCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCCcEEEEeeccCCC-cccEEEEE
Q 016185 128 GDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTGICILIFAGAGGH-RNEVLSVD 206 (394)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~i~~~~ 206 (394)
.-+-.-.+..|..+.+|+..+. .+++||+...+.++.... .+ ...|+.++
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG~---------------------------~l~~YdlG~K~lLRk~e~--k~~p~~Is~iq 983 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVGR---------------------------FLRLYDLGKKKLLRKCEL--KFIPNRISSIQ 983 (1205)
T ss_pred CCCccceEEeccCCEEEEeccc---------------------------EEEEeeCChHHHHhhhhh--ccCceEEEEEe
Q ss_pred ecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe-CcEEEEeecCC
Q 016185 207 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDN 285 (394)
Q Consensus 207 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg 285 (394)
+ .+..+++|...-.+.++..+.... +.-+..-..-+..|+++.+- -+.++.+..-|
T Consensus 984 t---~~~RI~VgD~qeSV~~~~y~~~~n--------------------~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfG 1040 (1205)
T KOG1898|consen 984 T---YGARIVVGDIQESVHFVRYRREDN--------------------QLIVFADDPVPRHVTALELLDYDTVAGADRFG 1040 (1205)
T ss_pred e---cceEEEEeeccceEEEEEEecCCC--------------------eEEEEeCCCccceeeEEEEecCCceeeccccC
Q ss_pred eEEEecC
Q 016185 286 EIVLWEP 292 (394)
Q Consensus 286 ~i~~~d~ 292 (394)
.+.+..+
T Consensus 1041 Ni~~vR~ 1047 (1205)
T KOG1898|consen 1041 NIAVVRI 1047 (1205)
T ss_pred cEEEEEC
No 470
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.48 E-value=8.9 Score=32.21 Aligned_cols=103 Identities=10% Similarity=0.110 Sum_probs=60.8
Q ss_pred CCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeec-cCCcEEEEEecC
Q 016185 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVG-QDESVRLWNVQT 185 (394)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~-~d~~i~vwd~~~ 185 (394)
-..|++||..+.+-..--.+-.+.|+++.|.. +.++++.|.. -..+ ....+..||..+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~f--------------------t~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNF--------------------TLNGTNSSNLATYDFKN 73 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEee--------------------EECCCCceeEEEEecCC
Confidence 45699999877665544444567899999985 5566766652 1222 366788999876
Q ss_pred CcEEEEeec-c-CCCcccEEEEEecCCCCe-eEEeec-cCC--cEEEEEccc
Q 016185 186 GICILIFAG-A-GGHRNEVLSVDFHPSDIY-RIASCG-MDN--TVKIWSMKE 231 (394)
Q Consensus 186 ~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~-~l~s~~-~dg--~v~iwd~~~ 231 (394)
.... .+.. . ..-.++|..+.+...+.. ..+.|. .+| .|..||=.+
T Consensus 74 ~~w~-~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 74 QTWS-SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred Ceee-ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 6432 2221 0 013478888888553444 343443 233 455555443
No 471
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.46 E-value=21 Score=31.93 Aligned_cols=153 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred ccceeEEEEEeeCCCcceEEEEecCCc-EEEEEcCCCceeEEeeecccCCcccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 016185 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (394)
Q Consensus 33 ~~~v~~i~~sp~~~~~~~~las~~~d~-i~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~~~dg~i~ 111 (394)
.+....+..++ ++.+++.+..+. ++-|| ........+.. .....+..+.+. +++. +++++...+.+.
T Consensus 238 ~Gsf~~v~~~~----dG~~~~vg~~G~~~~s~d-~G~~~W~~~~~----~~~~~l~~v~~~--~dg~-l~l~g~~G~l~~ 305 (398)
T PLN00033 238 TGTFSTVNRSP----DGDYVAVSSRGNFYLTWE-PGQPYWQPHNR----ASARRIQNMGWR--ADGG-LWLLTRGGGLYV 305 (398)
T ss_pred ccceeeEEEcC----CCCEEEEECCccEEEecC-CCCcceEEecC----CCccceeeeeEc--CCCC-EEEEeCCceEEE
Q ss_pred EEECCCCeeEEEEEecCCc-----eeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEecCC
Q 016185 112 VIDVSNEKLHKSFVGHGDS-----INEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNVQTG 186 (394)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~ 186 (394)
--|-........+..-... +.++.|.+ ++..+++|. .|.+... ...|
T Consensus 306 S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G~--------------------------~G~v~~s-~D~G 357 (398)
T PLN00033 306 SKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAGG--------------------------SGILLRS-TDGG 357 (398)
T ss_pred ecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEEEC--------------------------CCcEEEe-CCCC
Q ss_pred cEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEE
Q 016185 187 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 227 (394)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iw 227 (394)
+.-........-....+.+.|. +.+.....+.+|.|.-|
T Consensus 358 ~tW~~~~~~~~~~~~ly~v~f~--~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 358 KSWKRDKGADNIAANLYSVKFF--DDKKGFVLGNDGVLLRY 396 (398)
T ss_pred cceeEccccCCCCcceeEEEEc--CCCceEEEeCCcEEEEe
No 472
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.45 E-value=1.8 Score=38.12 Aligned_cols=166 Identities=10% Similarity=0.057 Sum_probs=90.2
Q ss_pred eccCccceeEEEEEeeCCCcceEEEEecCCcEEEEEcCCCce-eEEeeecccCCcccceE-EEEEEEcCCCCcEEEEeec
Q 016185 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV-IAALQSYVDEDKEESFY-TVSWACNVDGIPFLVAGGI 106 (394)
Q Consensus 29 ~~~h~~~v~~i~~sp~~~~~~~~las~~~d~i~vw~~~~~~~-~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~s~~~ 106 (394)
+..-...|..+-..| +|+.+..-+...+.|+++.+... .+.+....+.+....|. .+..- ..|. -|+.++.
T Consensus 216 L~~~~~~v~qllL~P----dg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL--~Gg~-SLLv~~~ 288 (733)
T COG4590 216 LSVPFSDVSQLLLTP----DGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL--SGGF-SLLVVHE 288 (733)
T ss_pred cCCCccchHhhEECC----CCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH--hCce-eEEEEcC
Confidence 334455677777888 78888887777788888766442 11111110000001111 11111 3444 6888889
Q ss_pred CCeEEEE-ECCCC-ee----EEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEE
Q 016185 107 NGIIRVI-DVSNE-KL----HKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRL 180 (394)
Q Consensus 107 dg~i~vw-d~~~~-~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 180 (394)
||.|.-| |+..+ .+ ++.++-...++..+.=. .+.+-+++-+. .|++.+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~-------------------------~G~L~~ 342 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYR-------------------------NGTLQS 342 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcC-------------------------CCceee
Confidence 9998877 44332 21 11111111222222211 13345556666 888888
Q ss_pred EEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccc
Q 016185 181 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 233 (394)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 233 (394)
+.-...+.+..-. --..+.-++++| ++.++++- ..|.++++.+++..
T Consensus 343 f~st~~~~lL~~~----~~~~~~~~~~Sp-~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 343 FYSTSEKLLLFER----AYQAPQLVAMSP-NQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred eecccCcceehhh----hhcCcceeeeCc-ccchheee-cCCceEEEEecCCC
Confidence 7654444332222 233567789999 88877764 46789999998843
No 473
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.32 E-value=18 Score=31.20 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=15.6
Q ss_pred EEeCcEEEEeecCC----eEEEecCCCCC
Q 016185 272 RWLGDFILSKSVDN----EIVLWEPKMKE 296 (394)
Q Consensus 272 ~~~~~~l~~~~~dg----~i~~~d~~~~~ 296 (394)
...+++.+.|+.++ .+..||.++.+
T Consensus 169 ~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 169 KLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EECCEEEEEcCCCCccccceEEEecCCCe
Confidence 33466777776653 35678887654
No 474
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.28 E-value=21 Score=31.74 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=21.4
Q ss_pred EEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccC
Q 016185 340 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 383 (394)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 383 (394)
+.+||..+.+...+..++.. .....++ .-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av--~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSV--SWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEE--EeCCEEEEEcCCC
Confidence 56789887765444444411 1122223 3356777777753
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.18 E-value=3.2 Score=22.70 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.6
Q ss_pred CCcEEEEEecCCcEEEEee
Q 016185 175 DESVRLWNVQTGICILIFA 193 (394)
Q Consensus 175 d~~i~vwd~~~~~~~~~~~ 193 (394)
++.|.++|..+++.+..+.
T Consensus 13 ~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCEEEEEECCCCeEEEEEE
Confidence 8899999998888888776
No 476
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.81 E-value=17 Score=30.17 Aligned_cols=225 Identities=16% Similarity=0.097 Sum_probs=118.2
Q ss_pred EcCCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEceeeeEEeeccceeeeeeeccceeee
Q 016185 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRV 172 (394)
Q Consensus 93 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~ 172 (394)
+.+||. .-+++...|.|--.|..+++....--+....-..+..-| ++..-++-+.
T Consensus 69 papdG~-VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~----------------------- 123 (353)
T COG4257 69 PAPDGA-VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTG----------------------- 123 (353)
T ss_pred cCCCCc-eEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCc-----------------------
Confidence 348887 777888788888888888876554444444556677777 4455544332
Q ss_pred ccCCcEEEEEecCCcEEEEeec-cCCCcccEEEEEecCCCCeeEEeecc---------CCcEEEEEccccceeecccccc
Q 016185 173 GQDESVRLWNVQTGICILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGM---------DNTVKIWSMKEFWTYVEKSFTW 242 (394)
Q Consensus 173 ~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~ 242 (394)
. .|.-.|.++.+... +.. .+.-........|++ .+++-+++.. .+.|++|+...+.
T Consensus 124 --~-aI~R~dpkt~evt~-f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~--------- 189 (353)
T COG4257 124 --L-AIGRLDPKTLEVTR-FPLPLEHADANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAPQGG--------- 189 (353)
T ss_pred --c-eeEEecCcccceEE-eecccccCCCcccceeeCC-CccEEEeeccccceecCcccCceeeeccCCCC---------
Confidence 2 45555554444322 221 112345677888998 8887777752 1344555444311
Q ss_pred CCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecCCCCCCCCCCCcceecccccCCCCCeEEEEE
Q 016185 243 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 322 (394)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (394)
.-.=.|+..+|..-++.-.+..|-..|...+.. +.+..-.........+--
T Consensus 190 ----------------------gpyGi~atpdGsvwyaslagnaiaridp~~~~a-------ev~p~P~~~~~gsRriws 240 (353)
T COG4257 190 ----------------------GPYGICATPDGSVWYASLAGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWS 240 (353)
T ss_pred ----------------------CCcceEECCCCcEEEEeccccceEEcccccCCc-------ceecCCCccccccccccc
Confidence 111122222355555555566666666655521 111111111222333444
Q ss_pred eecCCcceEEEEeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 323 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 323 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
+|.+ +.-++-...+.+..||-.... -....+. +....-.++.....++...+=-..|.|.-+|
T Consensus 241 dpig--~~wittwg~g~l~rfdPs~~s-W~eypLP--gs~arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 241 DPIG--RAWITTWGTGSLHRFDPSVTS-WIEYPLP--GSKARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred CccC--cEEEeccCCceeeEeCccccc-ceeeeCC--CCCCCcceeeeccCCcEEeeccccCceeecC
Confidence 5555 566666667778888776553 1223333 4444555555555555544433444444444
No 477
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.51 E-value=9.7 Score=35.84 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=38.7
Q ss_pred ceEEEEeCCCcEEEEEecC---CCceeeEEecc-------------------CCccCCeeEEEecc----CCCEEEEecc
Q 016185 329 NAAAIGNREGKIFVWELQS---SPPVLIARLSH-------------------AQSKSPIRQTAMSY----DGSTILSCCE 382 (394)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~-------------------~~~~~~v~~~~~s~----~~~~l~s~~~ 382 (394)
..++.+..||.+....... ........... ......+..++++. +..+|++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 5788888999998888775 11111111110 00123456667766 6789999999
Q ss_pred CCeEEEEEcCC
Q 016185 383 DGAIWRWDAIP 393 (394)
Q Consensus 383 dg~i~iwd~~~ 393 (394)
|+.+|+||+.+
T Consensus 239 D~~LRiW~l~t 249 (547)
T PF11715_consen 239 DHTLRIWSLET 249 (547)
T ss_dssp TSEEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 99999999976
No 478
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=86.39 E-value=2 Score=22.04 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=19.7
Q ss_pred cceeeeccCCcEEEEEecCCcEEEEe
Q 016185 167 SNCLRVGQDESVRLWNVQTGICILIF 192 (394)
Q Consensus 167 ~~~~~~~~d~~i~vwd~~~~~~~~~~ 192 (394)
+.+++++.+|.+..+|.++|+....+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 34555666999999999998877653
No 479
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.97 E-value=26 Score=31.52 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=79.7
Q ss_pred eeeecCCCceeeeecccccccceeeeec--cCccceeEEEEEee-CCCcceEEEEecCCcEEEEEcCC--Cc-------e
Q 016185 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQ--EGKRPLYAVVFNFI-DSRYFNVFATVGGNRVTVYQCLE--GG-------V 70 (394)
Q Consensus 3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~i~~sp~-~~~~~~~las~~~d~i~vw~~~~--~~-------~ 70 (394)
...+|.-.+..++.......++....+- .-..+|..|+.-+. .+.....||.-.-.++.||.+.. |. .
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~ 118 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQ 118 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEE
Confidence 3456766666666666666666544442 33678988887642 11234577877777788888732 11 2
Q ss_pred eEEeeecccCCcccceEEEEEEEc--CCCCcEEEEeecCCeEEEEECCCCeeEEEEEecCCceeEEEEcCCCCcEEEEce
Q 016185 71 IAALQSYVDEDKEESFYTVSWACN--VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148 (394)
Q Consensus 71 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 148 (394)
+..+..|. -....+.+++-+- ..|+.++..-+.||.+.+++-+.-...+.+.. ---...+.|.+ ....|++++
T Consensus 119 L~~~yeh~---l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~-~tDsfvt~s 193 (418)
T PF14727_consen 119 LELIYEHS---LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCP-RTDSFVTAS 193 (418)
T ss_pred EEEEEEEe---cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEee-cCCEEEEec
Confidence 22333221 1222333333211 23356899999999999999655444444443 22234566777 445555555
Q ss_pred e
Q 016185 149 K 149 (394)
Q Consensus 149 ~ 149 (394)
.
T Consensus 194 s 194 (418)
T PF14727_consen 194 S 194 (418)
T ss_pred C
Confidence 4
No 480
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.14 E-value=22 Score=30.10 Aligned_cols=198 Identities=7% Similarity=-0.044 Sum_probs=92.0
Q ss_pred CcEEEEEecCCcEEEEeeccC---CCcccEEEEEecCCC-----CeeEEeeccCCcEEEEEccccceeeccccccCCCCC
Q 016185 176 ESVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSD-----IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 247 (394)
Q Consensus 176 ~~i~vwd~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~-----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 247 (394)
-.|.+||+.+++.++.+.-.. ...+.+..+.+...+ +...++=+..+.|.++|+.+++..--........+.
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 478899999999888776321 124677888887622 233445455578999999996532221111111111
Q ss_pred CCCccccccceeeeecCCCceEEEEEe-----CcEEEEeecCCeEEEecCCCCCCCCCCCc--c---eecccccCCCCCe
Q 016185 248 KFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGT--A---DILQKYPVPECDI 317 (394)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~---~~~~~~~~~~~~i 317 (394)
...... ... .+. ....+..++.+ ++.|.-....+. ++|.+.+......... . ..++.+-......
T Consensus 114 ~~~~~i-~g~--~~~-~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s 188 (287)
T PF03022_consen 114 AGPFTI-GGE--SFQ-WPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQS 188 (287)
T ss_dssp SEEEEE-TTE--EEE-ETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SE
T ss_pred ccceec-cCc--eEe-cCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCC
Confidence 000000 000 111 11225555553 233443322211 1222221110000000 0 0111111111345
Q ss_pred EEEEEeecCCcceEEEEeCCCcEEEEEecCCCc-eeeEEeccCCc-cCCeeEEEecc--CCCEEEEe
Q 016185 318 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-VLIARLSHAQS-KSPIRQTAMSY--DGSTILSC 380 (394)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~-~~~v~~~~~s~--~~~~l~s~ 380 (394)
..++++++| .++++--..+.|..|+..+.-. .....+..... -..+.++.+.+ +|.+.+.+
T Consensus 189 ~g~~~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMAIDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEEEETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEEECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 577888887 6788888899999999886210 11222221122 46788999998 77766554
No 481
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=83.67 E-value=13 Score=35.88 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=53.0
Q ss_pred CCCeEEEEEe----ecCCcceEEEEeCCCcEE-EEEecC---CCceeeEEeccCCccCCeeEEEeccCCCEEEEeccCCe
Q 016185 314 ECDIWFIKFS----CDFHYNAAAIGNREGKIF-VWELQS---SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA 385 (394)
Q Consensus 314 ~~~i~~~~~~----~~~~~~~l~~~~~dg~i~-iwd~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 385 (394)
....+.++.. .++.+..+..|+++|+|. +-.... .....+.+++...+..+|..|..++....|.+|+..|.
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV 486 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGV 486 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcE
Confidence 3445566665 567678899999999874 444433 11125666664455589999999999889999999887
Q ss_pred EEE
Q 016185 386 IWR 388 (394)
Q Consensus 386 i~i 388 (394)
++|
T Consensus 487 ~qv 489 (737)
T KOG3611|consen 487 VQV 489 (737)
T ss_pred EEe
Confidence 765
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.95 E-value=36 Score=30.79 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.6
Q ss_pred CCeeEEEeccCCCEEEEeccCCeEEEEEcC
Q 016185 363 SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 363 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 392 (394)
..|.+++..+..+.|++.+.+|.|.+|++.
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 348899999888999999999999999985
No 483
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.86 E-value=38 Score=31.00 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=21.3
Q ss_pred ccEEEEEecCCCCeeEEeeccCCcEEEEE
Q 016185 200 NEVLSVDFHPSDIYRIASCGMDNTVKIWS 228 (394)
Q Consensus 200 ~~i~~~~~~~~~~~~l~s~~~dg~v~iwd 228 (394)
-.|..+..++ .|..++-.+.+|.+.++=
T Consensus 104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 104 FEVYQVLLSP-TGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEEecC-CCceEEEecCCeeEEEEc
Confidence 3577788888 888888888888766654
No 484
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.52 E-value=6.4 Score=21.14 Aligned_cols=28 Identities=21% Similarity=0.059 Sum_probs=18.1
Q ss_pred CCeEEEEEeecCCcceEEEEeCC--CcEEEE
Q 016185 315 CDIWFIKFSCDFHYNAAAIGNRE--GKIFVW 343 (394)
Q Consensus 315 ~~i~~~~~~~~~~~~~l~~~~~d--g~i~iw 343 (394)
.......|+||++ .++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk-~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGK-YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSS-EEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCC-EEEEEecCCCCCCcCEE
Confidence 3566789999996 355555556 666665
No 485
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=80.86 E-value=42 Score=32.97 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=78.7
Q ss_pred ecCCeEEEEECCCCeeEEEEEecCCceeEEEE-cCCCCcEEEEceeeeEEeeccceeeeeeeccceeeeccCCcEEEEEe
Q 016185 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRT-QPLKPSLVVSASKVIIISSLSLICLLLFIRSNCLRVGQDESVRLWNV 183 (394)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~i~vwd~ 183 (394)
..|+.+.+||..++...+.+..-...|..++. -| ..+.+++.-. +++..+....+.++-+
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrP-kantFvs~i~------------------hlL~vAT~~e~~ilgv 159 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRP-KANTFVSRIS------------------HLLFVATEKEVMILGV 159 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEecc-CCcccHHhhh------------------hhhhhhhhheeeEEEE
Confidence 45788999999977665555544445555553 34 4444333221 1111111333444332
Q ss_pred c----CCcEEEEeec-c--CCCcccEEEEEecCCCCeeEEeeccCCcEEEEEccccceeeccccccCCCC---CCCCcc-
Q 016185 184 Q----TGICILIFAG-A--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP---SKFPTK- 252 (394)
Q Consensus 184 ~----~~~~~~~~~~-~--~~~~~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~- 252 (394)
. +++. ..+.. + .-..-.|.|+.-+. +|+.+++|..| +.+|.+.-.... .|-... ......
T Consensus 160 s~d~~T~El-s~fnTgl~vsvqGinV~civs~e-~GrIFf~g~~d--~nvyEl~Y~~sd-----~wfnskcskiclTkS~ 230 (1263)
T COG5308 160 SKDTKTGEL-SLFNTGLVVSVQGINVRCIVSEE-DGRIFFGGEND--PNVYELVYKSSD-----SWFNSKCSKICLTKSI 230 (1263)
T ss_pred Eecccccee-EEEecceEEeccCceeEEEEecc-CCcEEEecCCC--CCeEEEEEeccc-----hhhhhhhhccCCcHHH
Confidence 2 2221 11110 0 01235678888887 89988888877 778877541100 000000 000000
Q ss_pred -ccccc-eeeeecCCCceEEEEEe--CcEEEEeecCCeEEEecCCCC
Q 016185 253 -YVQFP-VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK 295 (394)
Q Consensus 253 -~~~~~-~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~~~d~~~~ 295 (394)
..-.| ......|...|..++.+ ...+.+-.....|+-|.+...
T Consensus 231 l~sllPs~~~~~ipgetI~Ql~vDqsRg~ly~Lr~kS~Vray~itkn 277 (1263)
T COG5308 231 LSSLLPSFFSFGIPGETIKQLAVDQSRGLLYVLRKKSAVRAYSITKN 277 (1263)
T ss_pred HHhhcccccccCCcccchhheeecccccceeeecccceeeeEeeecc
Confidence 00001 11223455667777776 335666666667777766544
No 486
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=80.79 E-value=5.3 Score=19.71 Aligned_cols=26 Identities=0% Similarity=0.042 Sum_probs=21.5
Q ss_pred CceEEEEEeCcEEEEeecCCeEEEec
Q 016185 266 NYVDCNRWLGDFILSKSVDNEIVLWE 291 (394)
Q Consensus 266 ~~i~~~~~~~~~l~~~~~dg~i~~~d 291 (394)
..|.+++..+++++.+..-+.+|+|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 35778888888999999999999884
No 487
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.60 E-value=25 Score=33.15 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=25.4
Q ss_pred CCcEEEEeecCCeEEEEECCCCeeEEEEEe
Q 016185 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (394)
Q Consensus 97 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 126 (394)
++.+|++.+.|+.+|+||+.+++++.+..-
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 334999999999999999999999777643
No 488
>PRK13684 Ycf48-like protein; Provisional
Probab=79.70 E-value=41 Score=29.31 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=75.5
Q ss_pred cccEEEEEecCCCCeeEEeeccCCcEEE-EEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEe--C
Q 016185 199 RNEVLSVDFHPSDIYRIASCGMDNTVKI-WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G 275 (394)
Q Consensus 199 ~~~i~~~~~~~~~~~~l~s~~~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 275 (394)
...+.++.+.| ++.+++++ ..|.+.. +|-.. +. | .+ ....-...+.++.+. +
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~gg-~t-------W-------------~~--~~~~~~~~l~~i~~~~~g 226 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPGQ-TA-------W-------------TP--HQRNSSRRLQSMGFQPDG 226 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCCCC-Ce-------E-------------EE--eeCCCcccceeeeEcCCC
Confidence 45788999998 77666554 4554443 22111 00 0 00 111223456666665 4
Q ss_pred cEEEEeecCCeEEEecCCCCCCCCCCCcceecccc-cCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeE
Q 016185 276 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 354 (394)
Q Consensus 276 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (394)
+.+++ +..|.+++=....++. -+.+... ......+..+.+.+++ . ++.++.+|.+.. ....++ .-.
T Consensus 227 ~~~~v-g~~G~~~~~s~d~G~s------W~~~~~~~~~~~~~l~~v~~~~~~--~-~~~~G~~G~v~~-S~d~G~--tW~ 293 (334)
T PRK13684 227 NLWML-ARGGQIRFNDPDDLES------WSKPIIPEITNGYGYLDLAYRTPG--E-IWAGGGNGTLLV-SKDGGK--TWE 293 (334)
T ss_pred CEEEE-ecCCEEEEccCCCCCc------cccccCCccccccceeeEEEcCCC--C-EEEEcCCCeEEE-eCCCCC--CCe
Confidence 44444 5567665423333321 0001100 1122356788888876 3 455556776653 333332 111
Q ss_pred Eecc-CCccCCeeEEEeccCCCEEEEeccCCeEEEEE
Q 016185 355 RLSH-AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 390 (394)
Q Consensus 355 ~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 390 (394)
.... ..-......+.|..+++.+++ +..|.|--|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 294 KDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred ECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 2210 122245777888777666664 4678887665
No 489
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=79.48 E-value=9.1 Score=25.39 Aligned_cols=31 Identities=16% Similarity=0.040 Sum_probs=25.3
Q ss_pred CCeeEEEeccCCCEEEEec-cCCeEEEEEcCC
Q 016185 363 SPIRQTAMSYDGSTILSCC-EDGAIWRWDAIP 393 (394)
Q Consensus 363 ~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~ 393 (394)
...+.|.++|++++|..++ ..+.|++|+...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4577899999999887765 568899998865
No 490
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=79.28 E-value=5.3 Score=21.46 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=20.9
Q ss_pred eeeeccCCcEEEEEecCCcEEEEee
Q 016185 169 CLRVGQDESVRLWNVQTGICILIFA 193 (394)
Q Consensus 169 ~~~~~~d~~i~vwd~~~~~~~~~~~ 193 (394)
++++..+|.|.-.|.++|+.+..+.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 4445569999999999999998887
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=79.13 E-value=6.1 Score=19.50 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=18.5
Q ss_pred CeeEEEeccCCCEEEEeccCCeEEEE
Q 016185 364 PIRQTAMSYDGSTILSCCEDGAIWRW 389 (394)
Q Consensus 364 ~v~~~~~s~~~~~l~s~~~dg~i~iw 389 (394)
....++++++|+.+++=+....|+++
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 35677787788777777777777664
No 492
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=78.81 E-value=8.1 Score=20.73 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.3
Q ss_pred EEEEeecCCeEEEEECCCCeeEEEEEe
Q 016185 100 FLVAGGINGIIRVIDVSNEKLHKSFVG 126 (394)
Q Consensus 100 ~l~s~~~dg~i~vwd~~~~~~~~~~~~ 126 (394)
.++.+..+|.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466679999999999999999988873
No 493
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.11 E-value=77 Score=31.59 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.1
Q ss_pred CCCCcEEEEeecCCeEEEEECCCC
Q 016185 95 VDGIPFLVAGGINGIIRVIDVSNE 118 (394)
Q Consensus 95 ~~~~~~l~s~~~dg~i~vwd~~~~ 118 (394)
.-|+ .|..|+.+|.+.+|.+.+.
T Consensus 24 ~~~~-~l~vGt~~G~L~lY~i~~~ 46 (877)
T KOG2063|consen 24 AYGN-HLYVGTRDGDLYLYSIYER 46 (877)
T ss_pred HhCC-EEEEEcCCCcEEEEecccc
Confidence 3466 8999999999999998654
No 494
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.65 E-value=30 Score=26.64 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=24.8
Q ss_pred CCeeEEEeccCC------CEEEEeccCCeEEEEEcC
Q 016185 363 SPIRQTAMSYDG------STILSCCEDGAIWRWDAI 392 (394)
Q Consensus 363 ~~v~~~~~s~~~------~~l~s~~~dg~i~iwd~~ 392 (394)
..+.+++|||.| -+||+.+.+|.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999953 478899999999999743
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=77.48 E-value=52 Score=29.25 Aligned_cols=42 Identities=10% Similarity=-0.187 Sum_probs=20.5
Q ss_pred CcEEEEEecCCcEEEEeeccCCCcccEEEEEecCCCCeeEEeecc
Q 016185 176 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 220 (394)
Q Consensus 176 ~~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~ 220 (394)
..+.+||..+.+-...-... .....-.++... ++++++.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p-~~~~~~~a~v~~--~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESP-FLGTAGSAVVIK--GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCC-CCCCCcceEEEE--CCEEEEEeee
Confidence 45889998776654321110 001112233333 5566666664
No 496
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.35 E-value=10 Score=25.38 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred EeCCCcEEEEEecCCCceeeEEeccCCccCCeeEEEeccCCCEEEEe--ccCCeEEEE
Q 016185 334 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC--CEDGAIWRW 389 (394)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iw 389 (394)
+..+|.+.-||..+++...+..=- ...+.+++++|+.+|+.+ +.-...+.|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L-----~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGL-----YFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEE-----SSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCC-----CccCeEEEcCCCCEEEEEeccCceEEEEE
No 497
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=75.41 E-value=55 Score=28.49 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=29.7
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEECCCCee---EEEEE----ecCCceeEEEEcC
Q 016185 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL---HKSFV----GHGDSINEIRTQP 138 (394)
Q Consensus 87 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~----~~~~~v~~~~~~~ 138 (394)
..++|. |+|+ +++ +...|.|++++ .++.. +..+. ........++++|
T Consensus 5 ~~~a~~--pdG~-l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 5 RSMAFL--PDGR-LLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp EEEEEE--TTSC-EEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred eEEEEe--CCCc-EEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence 456777 9987 544 56699999999 44443 22221 2345678899998
No 498
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=75.21 E-value=64 Score=29.20 Aligned_cols=31 Identities=13% Similarity=0.420 Sum_probs=25.0
Q ss_pred ccEEEEEecCCCCeeEEeeccCCcEEEEEccc
Q 016185 200 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 231 (394)
Q Consensus 200 ~~i~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 231 (394)
..|.+++..+ ..+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDP-SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence 3499999998 778999999999999999975
No 499
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=74.01 E-value=59 Score=28.22 Aligned_cols=107 Identities=12% Similarity=0.013 Sum_probs=57.9
Q ss_pred EEEEe--CcEEEEeecC------CeEEEecCCCCCCCCCCCcceecc------cccCCCCCeEEEEEeecCCcceEEEEe
Q 016185 270 CNRWL--GDFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQ------KYPVPECDIWFIKFSCDFHYNAAAIGN 335 (394)
Q Consensus 270 ~~~~~--~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~l~~~~ 335 (394)
+|++. +.++++.-.+ ..|..++.. ++..........+. .-...+....+++++|+++ .|+++.
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~--~l~~~~ 165 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR--TLFAAM 165 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC--EEEEEE
Confidence 44442 6677776666 788888877 43211110011110 1223456789999999994 444443
Q ss_pred C-----CC---------cEEEEEecCCC---ceeeEEeccCC-----ccCCeeEEEeccCCCEEEE
Q 016185 336 R-----EG---------KIFVWELQSSP---PVLIARLSHAQ-----SKSPIRQTAMSYDGSTILS 379 (394)
Q Consensus 336 ~-----dg---------~i~iwd~~~~~---~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s 379 (394)
+ |+ .++++...... +.....+.... ....|+.+.+-+++++|+-
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 22 15565554321 11222222112 4577899999999987773
No 500
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=73.59 E-value=18 Score=34.93 Aligned_cols=149 Identities=10% Similarity=-0.005 Sum_probs=83.3
Q ss_pred eeEEeeccCCcEEEEEccccceeeccccccCCCCCCCCccccccceeeeecCCCceEEEEEeCcEEEEeecCCeEEEecC
Q 016185 213 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP 292 (394)
Q Consensus 213 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~~~d~ 292 (394)
..+..|+.++.+.++.-..... . .........-...+.++.+....+..|..||++-.|--
T Consensus 548 PTic~gtq~ssisissss~~s~-k------------------e~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~r 608 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSI-K------------------EVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGR 608 (925)
T ss_pred CcccccCccceeEEeeccCCcc-c------------------ceeccCCCCchhhhhhhhccccccccCccCCccccccC
Confidence 3577788888888887662110 0 00011111223445566666555666666777666543
Q ss_pred CCCCCCCCCCcceecccccCCCCCeEEEEEeecCCcceEEEEeCCCcEEEEEecCCCceeeEEec-cCCccCCeeEEEec
Q 016185 293 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMS 371 (394)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~s 371 (394)
..... . ..++-..+.....++...++..+ ++-++.+|.|.++...+.. ....+. +..|...|+.+...
T Consensus 609 ap~gS--w--d~ep~~~~~~g~lPvrsla~~ed-----~~was~gG~V~vi~~tt~~--~~~~leahqee~~~Vthm~~~ 677 (925)
T KOG3522|consen 609 APSGS--W--DGEPNISIPTGSLPVRSLAFQED-----FVWASEGGCVHVIPSTTFI--RSWDLEAHQEEAHSVTHMLYL 677 (925)
T ss_pred CCCCC--C--CCCCccccccCCccccchhhhhc-----eeeeecCCceEEEechhcc--ccchhHHHHhhcceEEEEEee
Confidence 32211 0 00011222333446667777654 4567778999999998763 223333 44666789999998
Q ss_pred cCCCEEEEeccCCeEEEEEcC
Q 016185 372 YDGSTILSCCEDGAIWRWDAI 392 (394)
Q Consensus 372 ~~~~~l~s~~~dg~i~iwd~~ 392 (394)
-.+-+++.++.| .++.++.+
T Consensus 678 ~~gVwvafasG~-~~rlfhte 697 (925)
T KOG3522|consen 678 DNGVWVAFASGD-EERLFHTE 697 (925)
T ss_pred CCceEEEEcCCC-EEEEeccc
Confidence 887777777665 44444443
Done!